################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software
## License Agreement" and the "Illumina Source Code License Agreement",
## and certain third party copyright/licenses, and any user of this
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file Report.mk
##
## brief Partial makefile to report the completion of the run.
##
## Email notification and optional RAMM report.
##
## author Come Raczy
##
################################################################################

RAMM:=${TOOLS_DIR}/gatherDiagnosticData.sh
RAMM_PARAMS:=$(RAMM_REPORT_TYPE) .

RR:=${TOOLS_DIR}/runReport.pl
RR_PARAMS:= "${CURDIR}" "$(EMAIL_SERVER)" "$(EMAIL_DOMAIN)" "$(WEB_DIR_ROOT)" \
 --strip "$(NUM_LEADING_DIRS_TO_STRIP)" $(EMAIL_LIST)

postrun.done: $(DATASET_TARGETS) Flowcell_Summary_$(FLOWCELL).htm $(RUN_REPORT)
	( $(LOG_INFO) Gerald analysis finished successfully. ); $(POST_RUN_COMMAND)

.PRECIOUS: $(RUN_REPORT)

$(RUN_REPORT): $(DATASET_TARGETS) Flowcell_Summary_$(FLOWCELL).htm Flowcell_$(SCORE_XML) Flowcell_$(RESCORE_XML)
	$(CMDPREFIX) $(RR) $(RR_PARAMS) && $(TOUCH_TARGET)
ifneq ($(RAMM_REPORT_TYPE),)
	$(CMDPREFIX) $(RAMM) $(RAMM_PARAMS)
endif