ontogetobsolete displays on-screen for a named ontology all term statement(s) that are obsolete. The information may be written to an output file in various formats.
Ontologies from the EMBOSS data directory are used.
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The default behaviour is to report the entire OBO term statement from the ontology. Optionally, then only the the term id, name and namespace, or just the term id will be reported.
The output file by default is in OBO plain text format as used by the ontologies in the EMBOSS data directory and explained at http://www.geneontology.org/GO.format.obo-1_2.shtml.
Optionally, the output can be in HTML, OBO-XML or JSON format.
OBO-format ontologies must be installed in the EMBOSS data directory and indexed. This is done automatically for typical installations.
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