ontoget

Function

Description

ontoget displays on-screen for a named ontology whether term statement(s) with the supplied IDs are obsolete or not. The information may be written to an output file in various formats.

Ontologies from the EMBOSS data directory are used.

Usage

Command line arguments


Input file format

Output file format

A single line per term is is given, including the term id, namespace and name, and whether it is obsolete or not.

Data files

OBO-format ontologies must be installed in the EMBOSS data directory and indexed. This is done automatically for typical installations.

Notes

References

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It exits with a status of 0.

Known bugs

None.

Author(s)

This application was modified by

History

Target users

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