showorf
Function
Description
showorf writes an input nucleotide sequence and its protein
translation to an output file in a clear format that is suitable for
publication. The translation can be done in any frame or combination
of frames using an (optionally) specified genetic code.
Usage
Command line arguments
Input file format
showorf reads a single nucleotide sequence.
Output file format
As a sequence with high GC content (from Pseudomonas aeruginosa) X13776
has several overlapping open reading frames.
The true ORFs are 1..109 (amiB partial) 135..1292 (amiC) 1289..1879 (amiR)
1925..end (amiS partial)
Data files
Showorf uses a genetic code table to translate the sequence.
Notes
None.
References
None.
Warnings
None.
Diagnostic Error Messages
None.
Exit status
It exits with a status of 0.
It always exits with status 0.
Known bugs
None.
Author(s)
History
Target users
Comments