wossoperation
Function
Description
wossoperation searches the annotation of applications in ACD files, using terms from the EDAM ontology. There are various options for controlling how the search is performed and what is given in the output file. Optionally, the output will be wrapped in HTML tags ready for inclusion in a Web page.
Algorithm
The first search is of the EDAM ontology operation namespace, using the
term names and their synonynms. All child terms are automatically
included in the set of matches inless the -nosubclasses
qualifier is used.
The -sensitive qualifier also searches the definition strings.
The set of EDAM terms are then compared to relations in the ACD file,
where the application definition requires EDAM operation annotation.
Usage
Command line arguments
Input file format
wossoperation reads the brief descriptions and the program groups from
the ACD files. (ACD files control the parameters that the programs
expect - don't worry about them unless you are writing EMBOSS
programs).
Output file format
The results are written out as a simple list of program names and
short descriptions.
Data files
Notes
None.
References
None.
Warnings
None.
Diagnostic Error Messages
None.
Exit status
It always exits with status 0.
Known bugs
None.
Author(s)
History
Target users
Comments