application: ensembltest [
  documentation: "Demonstration of the Ensembl API to be."
  groups: "Test"
  embassy: "myemboss"
    relations: "EDAM:0000220 topic File handling"
    relations: "EDAM:0000336 operation File debugging"
]

section: input [
  information: "Input section"
  type: "page"
]

endsection: input

section: required [
  information: "Required section"
  type: "page"
]

endsection: required

section: additional [
  information: "Additional section"
  type: "page"
]

  boolean: large [
    default: "N"
    help: "Set this to 'Y' to download large test data sets."
    information: "Process large data sets"
  ]

endsection: additional

section: output [
  information: "Output section"
  type: "page"
]

  outfile: outfile  [
    standard: "Y"
    knowntype: "ensembltest output"
  ]

  seqoutall: outseq [
    standard: "Y"
    extension: "seq"
    type: "nucleotide"
  ]

  integer: maxnum [
    information: "Maximum number of genes to process or -1 for all."
    default: "25"
    standard: "$(large)"
  ]

  seqoutall: exonsoutseq [
    information: "Output file for Ensembl Exons"
    name: "exons"
    extension: "fa"
    features: "N"
    standard: "$(large)"
    type: "nucleotide"
  ]

  seqoutall: transcriptsoutseq [
    information: "Output file for Ensembl Transcripts"
    name: "transcripts"
    extension: "fa"
    features: "N"
    standard: "$(large)"
    type: "nucleotide"
  ]

  seqoutall: translationsoutseq [
    information: "Output file for Ensembl Translations"
    name: "translations"
    extension: "fa"
    features: "N"
    standard: "$(large)"
    type: "nucleotide"
  ]

endsection: output