/** @source ontoisobsolete ** ** Test ontology term is obsolete ** ** @author Copyright (C) 2010 Jon Ison / EMBOSS ** @version 1 First version ** @modified July 2010 Jon Ison First version ** @@ ** ** This program is free software; you can redistribute it and/or ** modify it under the terms of the GNU General Public License ** as published by the Free Software Foundation; either version 2 ** of the License, or (at your option) any later version. ** ** This program is distributed in the hope that it will be useful, ** but WITHOUT ANY WARRANTY; without even the implied warranty of ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ** GNU General Public License for more details. ** ** You should have received a copy of the GNU General Public License ** along with this program; if not, write to the Free Software ** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. ********************************************************************/ /* ==================================================================== */ /* ========================== include files =========================== */ /* ==================================================================== */ #include "emboss.h" /* Inclusion of system and local header files goes here */ /* ==================================================================== */ /* ============================ constants ============================= */ /* ==================================================================== */ /* #define and enum statements go here */ /* ==================================================================== */ /* ======================== global variables ========================== */ /* ==================================================================== */ /* Global variables definitions go here */ /* ==================================================================== */ /* ============================== data ================================ */ /* ==================================================================== */ /* Definition of datatypes go here */ /* ==================================================================== */ /* ==================== function prototypes =========================== */ /* ==================================================================== */ /* Function prototypes for public (external) functions go here */ /* @prog ontoisobsolete ******************************************************* ** ** Test whether ontology term is obsolete ** ******************************************************************************/ int main(int argc, char **argv) { /* Variable declarations */ AjPFile outf = NULL; AjPObo obo = NULL; /* ACD processing */ embInit("ontoisobsolete", argc, argv); obo = ajAcdGetObo("oboterms"); outf = ajAcdGetOutfile("outfile"); if(ajOboIsObsolete(obo)) ajFmtPrintF(outf, "Obsolete\n"); else ajFmtPrintF(outf, "%S:%S OK\n", ajOboGetDb(obo), ajOboGetId(obo)); /* Memory clean-up and exit */ ajOboDel(&obo); ajFileClose(&outf); embExit(); return 0; } /* ==================================================================== */ /* ============================ functions ============================= */ /* ==================================================================== */