CFLAGS = -O

DESTDIR = ../bin/
SRCDIR =  ./

.c.o: ; cc -c $(CFLAGS) $*.c

CFILES = $(SRCDIR)IG-to-tbl.c $(SRCDIR)tbl-to-IG.c \
         $(SRCDIR)sd.c $(SRCDIR)calc-IC.c $(SRCDIR)extract-records.c \
         $(SRCDIR)extract-cluster-loci.c $(SRCDIR)print-cluster.c

all:     IG-to-tbl tbl-to-IG sd calc-IC extract-records cluster pima \
         extract-cluster-loci print-cluster
clean:
install:

IG-to-tbl:
	cc $(CFLAGS) $(SRCDIR)IG-to-tbl.c -o $(DESTDIR)IG-to-tbl
tbl-to-IG:
	cc $(CFLAGS) $(SRCDIR)tbl-to-IG.c -o $(DESTDIR)tbl-to-IG
sd:
	cc $(CFLAGS) $(SRCDIR)sd.c -o $(DESTDIR)sd -lm
calc-IC:
	cc $(CFLAGS) $(SRCDIR)calc-IC.c -o $(DESTDIR)calc-IC -lm
extract-records:
	cc $(CFLAGS) $(SRCDIR)extract-records.c -o $(DESTDIR)extract-records
extract-cluster-loci:
	cc $(CFLAGS) $(SRCDIR)extract-cluster-loci.c -o $(DESTDIR)extract-cluster-loci
print-cluster:
	cc $(CFLAGS) $(SRCDIR)print-cluster.c -o $(DESTDIR)print-cluster

cluster: ALWAYS_MAKE
	(cd cluster; make)
pima: ALWAYS_MAKE
	(cd pima; make)

ALWAYS_MAKE:


depend: 
	cc -M ${COPTS} ${CFILES} | \
	sed -e ':loop' \
	    -e 's/\.\.\/[^ /]*\/\.\./../' \
	    -e 't loop' | \
	grep -v /usr/include | \
	awk ' { if ($$1 != prev) { print rec; rec = $$0; prev = $$1; } \
		else { if (length(rec $$2) > 78) { print rec; rec = $$0; } \
		       else rec = rec " " $$2 } } \
	      END { print rec } ' > makedep
	echo '/^# DO NOT DELETE THIS LINE/+1,$$d' >eddep
	echo '$$r makedep' >>eddep
	echo 'w' >>eddep
	cp Makefile Makefile.bak
	ex - Makefile < eddep
	rm eddep makedep


# DO NOT DELETE THIS LINE - make depend uses it