// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.core.gpmldiff; import java.io.File; import java.io.PrintStream; import org.pathvisio.core.model.PathwayElement; /** Naive implementation of Outputter. */ class BasicOutputter extends DiffOutputter { PrintStream output = null; BasicOutputter(File f) { //TODO: open file } BasicOutputter() { output = System.out; } public void flush() { } public void insert(PathwayElement newElt) { output.println ("insert: " + PwyElt.summary(newElt)); } public void delete(PathwayElement oldElt) { output.println ("delete: " + PwyElt.summary(oldElt)); } PathwayElement curOldElt = null; PathwayElement curNewElt = null; public void modifyStart (PathwayElement oldElt, PathwayElement newElt) { curOldElt = oldElt; curNewElt = newElt; } public void modifyEnd () { curOldElt = null; curNewElt = null; } public void modifyAttr(String attr, String oldVal, String newVal) { assert (curOldElt != null); assert (curNewElt != null); output.println ("modify: " + PwyElt.summary(curNewElt) + "[" + attr + ": '" + oldVal + "' -> '" + newVal + "']"); } }