== TODO & BUGS ==

HIGH PRIORITY

* Test with Sjoerd's modifications

* BUG: Labels too big (don't scale with zoom factor?)

* Patch tool using Dgpml input, with adjustable fuzz factor

* Make similarity function more flexible. There must be a minimum
  similarity. Can two different object types match? Should there be a
  priority score per Attribute?

* BUG: Line matching wrong when comparing Ach_synth.gpml version 2 and
  3. Need to score based on movement distance.

* Yellow color not very visible, maybe use different color?

* Better hinting: CenterX, CenterY changed should be Position changed.


LOW PRIORITY

* Pathway.equals

* add timing code

* Test with lot's of Biopax content (or maybe just ignore biopax content?)

* Test script, that takes any two similar pathways, compares them,
  creates a diff and then pathches both ways and see if you get the
  same thing back. Should run as an agent on wikipathways
  automatically.

== Milestones ==

Original estimates are between parenthesis, followed by current estimate

 * XML diff utility 
   start : (May 28) may 28
   status: COMPLETED

 * SVG generation
   start : (Jun 18) Jun 18
   status: COMPLETED

 * Patch Utility
   start: (not planned) Jul 11
   status: IN PROGRESS
 
 * Integration into wikipathways.org.
   start : (Jul 2) Jul 30
   status : NOT STARTED

 * User testing and performance optimization
   start : (Jul 23) Aug 7
   status : NOT STARTED

 * Integration into PathVisio (1 week)
   start : (if time allows)
   status : NOT STARTED