// PathVisio,
// a tool for data visualization and analysis using Biological Pathways
// Copyright 2006-2011 BiGCaT Bioinformatics
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
package org.ebi.arrayexpress;

import junit.framework.TestCase;
import atlas.model.Factor;
import atlas.model.GeneSet;

public class TestAtlas extends TestCase {

	String[] genes = new String[] {
		"ENSG00000001631",
		"ENSG00000003987",
		"ENSG00000003400",
		"ENSG00000001032",
		"ENSG00000002544",
	};

	String[] exps = new String[] {
		"E-GEOD-5099",
		"E-MEXP-149",
		"E-GEOD-4290",
		"E-GEOD-4667",
		"E-GEOD-3202",
		"E-TABM-276",
	};

	public void testGeneSet() {
		try {
			GeneSet gsObj = new GeneSet(genes, "Homo sapiens");
			for(Factor f : gsObj.getFactors()) {
				System.err.println(f);
			}
		} catch(Exception e) {
			e.printStackTrace();
			fail(e.getMessage());
		}
	}
}