// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.cytoscape.visualmapping; import cytoscape.visual.mappings.PassThroughMapping; import java.awt.Color; import java.util.Map; public class GpmlColorMapper extends PassThroughMapping { public GpmlColorMapper(Color defaultColor) { super(defaultColor); } public GpmlColorMapper(Color defaultColor, byte mapType) { super(defaultColor, mapType); } public GpmlColorMapper(Color defaultColor, String attrName) { super(defaultColor, attrName); } public Object calculateRangeValue(Map attrBundle) { if (attrBundle == null || getControllingAttributeName() == null) return null; Object value = attrBundle.get(getControllingAttributeName()); if (value != null) { String colStr = value.toString(); Color c = Color.decode(colStr); return c; } return null; } }