ID MirageN1b_CB repbase; DNA; CBR; 1126 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE MirageN1b_CB is a nonautonomous DNA transposon that belongs to DE the Mirage superfamily. XX KW Mirage; DNA transposon; Transposable Element; Nonautonomous; KW nonautonomous DNA transposon; Mirage superfamily; MirageN1b_CB; KW MirageN1a_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1126 RA Kapitonov V.V. and Jurka J.; RT "MirageN1_CB, a family of nonautonomous Mirage transposons in the RT Caenorhabditis briggsae genome."; RL Repbase Reports 4(6), 188-188 (2004). XX DR [1] (Consensus) XX CC MirageN1b_CB is a subfamily of MirageN1_CB nonautonomous DNA CC transposons that belongs to the Mirage superfamily detected CC previously in the C. elegans genome. These elements are CC characterized by 15-bp terminal inverted repeats and 2-bp CC target site duplications, they are over 97%identical to the CC MirageN1b_CB consensus sequence. This consensus sequence is CC 87% identical to the MirageN1a_CB consensus sequence CC representing the MirageN1a_CB subfamily.MirageN1b_CB and CC MirageN1a_CB are nonautonomous transposons whose autonomous CC counterparts were relatives of Mirage1_CB. XX SQ Sequence 1126 BP; 342 A; 221 C; 221 G; 340 T; 2 other; cacaggtgat tcgtgattga ccaattacag atgaagagct ataaacgacc caattactca 60 cctaccgcaa actagtgctt ctacaattga acattcacga gcacattgcg tatcttacta 120 actgacccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt ttttcctttt 180 tcgaagttct ttcacctatt ttggttattt ttcatcgttt ttttttcagt ttccttcgca 240 atttttgtcc gtaaattatt atttaaccta caagagcata ctagaatact gtctcagcca 300 gtattttgct ttttatttgc agaaaaattg aaaaaatggc caggagacaa atgtcggaag 360 ctagaagtcg aaattttggt ttattcagga grtagcactg ctactgtact ttcaaaaggt 420 aagaagcgtt cagaaagtcc gaatttcaaa tccaattttt acagggagcc aggaaattct 480 caattttctg gtacgtccac tgagtactcc ggaaaagaaa cgactgagaa agaggaagga 540 agaaaaactg gaacggtggg tagatttgaa aaaaaatctg agaaaaaact ttagatttca 600 gtcggaagtg tcaaattcgc tgatttcgag aaaatttcca gccgataact tctgtcagag 660 gtatagtaca aaaattagtg ggagcttaaa atttcgawaa atcatttcag tttgctaacc 720 gagattctac agcgtcttct cctcccccac ttggaccgtc atcgaaaaag acaaaagctg 780 acagaagtag aagcttcgac gccgttccag ccaatacgat gacagcggaa gagaataata 840 taacttttaa ttaattgttt tttcgttttt ccttgttttt tctgtgcaat aaacaatttt 900 tagcagctgc tagcttccag attcgaaaaa atatatgcca attattgctc tcgcgacaag 960 ccaattgtag gagatttgct cgcgataggc ggaatattgg tcgtttgcgg tggcgctttc 1020 gcgattggtc tgtaaatggc ctgcggcagg catgttccga tgtacccatg gcgattttcc 1080 gcgaacaata tttcacctat tatagacgct gcgcgaatca cctgtg 1126 // ID MARINER36_CB repbase; DNA; CBR; 1619 BP. XX AC . XX DT 09-JUL-2004 (Rel. 1, Created) DT 09-JUL-2004 (Rel. 1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA; mariner/Tc1 superfamily; Cb000358; MARINER36_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1619 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1619 RA Pavlicek A. and Jurka J.; RT "MARINER36_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are 99% identical to the consensus. CC MARINER36_CB contains 48bp-long imperfect TIRs and is flanked CC by TA target duplications. Similar to TC1, TC1_DM, TC1_XL, and CC MARINER15_CB. The central part shares similarity to mariner CC transposases. XX SQ Sequence 1619 BP; 462 A; 363 C; 330 G; 464 T; 0 other; cagtaccggt caaaaggttg taaacgcaag gttttttgag cataactact ttttgagagc 60 agatatcgag ccaaaatttt caccagatat ttctgtaaag gtttgccaaa tcgtggccaa 120 gtttcataca aaaatttgaa aaaataacgt ttttttagag aaaaaattga attttcgaaa 180 aaaaaatcaa attttgacct aaatttttca aaaaagcata atttccgaaa accactttta 240 ttcaacacaa aacatataaa aaataacaaa ttgaatctaa tattttgttg caaagccacg 300 agagtcaatg acagcctgac atctgcgctg catggagtcg agcaaattgt cgattactgt 360 ctgtgggatc ttcttccatt cctcttccag ttgttggtac ttttcgtcca catttttggc 420 ttttttccct gccaatcttc tctccagctc atcccataga ttctcgatcg gattgaggtc 480 cggggactgg cttggccaat ccataacgcg aactctgcgg ctggagaacc aatcctaaaa 540 tcgaaaatat tttgagacat cagaatcttt tgtaccttga cgaatttgga agtgtgtttc 600 ggatcgttat cctgttggaa aacgatccca cgacccatgg ctttgtaatg tggcagcatt 660 ttggattcta ggatatcctt gtagacgtag cgatccatga tagttgtgat gcgatgaatc 720 ggtccgatgc cttttccgga aaagacaccc cagaccatac agctgcctcc accgtgcttg 780 acggttggta attggtatct gggatcatac cgagagccaa ctggacgccg catccattga 840 atcccgtcgc ttccgaaaag catgaacttg ctttcgtccg accacaaaac ctggttccaa 900 tcttgacgag tccaattgag gtgttgcttc gcccaggcaa ctctggcttt tctgttcttc 960 tccgaaatga acggcttctt aactggacgt cttcccatga ttccagctgc tctcaaacga 1020 cgtttgacgg tcgaggtcga tggggaaacc ggactaatca aaaatacctc ccgtccaatc 1080 gcaggcgcag tcaatcttgg attgcttctg gagacgcggg caatgttgat atcatccaga 1140 tgagaagtga cacgtgggcg gccgatatga tactttactg gtttacatcc gtggctcttc 1200 cagcgcttca gaaatctaga aatgcatggt tttcctacgt caaactgaga agctagatct 1260 ccaagagatg ctccattttg gtgtccccga aaaatggctt tttgctcctc aacggtcaag 1320 ttacgctttt tcccagctct tggcatacct gaaaactaaa agctactaaa aaaacattga 1380 aaacattgat aaattttgaa aaaaaatagg tctgaaaaaa agggcgaaaa acccgatttt 1440 ttcgaaaaac tgaaaaatct gcagaatcgc gtcagcgtgt ttgcgtacaa ctcgctgacc 1500 gtagtcatac cttttgactt gcccctgtag ttaccagaaa aaaaatcacg gaatttggtt 1560 gggtattcgt tgagttatgc tcgaaaaacc ctgcgtttac aaccttttga ccggtactg 1619 // ID TCB2 repbase; DNA; CBR; 1612 BP. XX AC . XX DT 15-SEP-2004 (Rel. 9.08, Created) DT 15-SEP-2004 (Rel. 9.08, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000463; DNA; KW TCB2; mariner/Tc1 superfamily; transposase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Prasad S.S., Harris J.L., Baillie L.D. and Rose M.A.; RT "The Genome Sequence of Caenorhabditis briggsae: Evolutionarily RT conserved regions in Caenorhabditis transposable elements deduced RT by sequence comparison."; RL Genome 34(1), 6-12 (1991). XX RN [2] RP 1-1612 RA Pavlicek A. and Jurka J.; RT "TCB2 - a family of autonomous mariner/Tc1-like transposons."; RL Direct Submission to Repbase Update (AUG-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 99-100% identical to the consensus. CC TCB2 contains 28bp-long TIRs and is flanked by TA target CC duplications. CC Positions 526-1345 encode a 273aa transposase. Related to TCB1, CC MARINER36_CB, TC1_DM, TC1_XL, and TC1_FR2 CC TCB2_ORF: 526-1345 (273 aa) CC MDRNIVRVSREDPQRSSTDIQMVVKTPNEVTPSLRTVRRRLQDAGLHGRRPAKKPSISKKNRIARVAWAR CC AHLHWGRQDWANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSIGPL CC RRITSIMDRFVYEDILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNP CC IEHLWEHVERQLRGVRASNANQKFDQLQDVWQAIPMSVIDTLLDSMPRRCQTVIDAKGFPTKY. XX SQ Sequence 1612 BP; 435 A; 348 C; 367 G; 462 T; 0 other; cagtactggc caaaaaggta ttcgcaaacg gttttttgag agtaactttg ctgaaactta 60 agggatcgat ctgaaaattt tactgtgcat gtcgtacacg gtgacgacaa attgcgtaca 120 aggaaattgc atcattttca gaaatttttt gtttttttca attttttcaa ttttttcgtt 180 ttttcacttt tttcatattt ttatattttt ggatattatg gtttctaaga atgttggttt 240 tggctcctat gtatttaaaa ctgtttacag acatggccag acccctcgga aaaaaaaaac 300 atctctcagg acatccgtaa agccatcgtc atcggcttca gaagtggatg ttccaaggac 360 ctcttggcgc agcagttcaa tgttactaaa cgtgccatcg agaagatctt gaagcagttt 420 cgggatgagg taatattcaa aaatagtata gttatggaaa aaaatgttta gggagccttg 480 gtggagcgaa aatcgcctgg aagaccgcgt atcacgtcga agaacatgga tcggaacatc 540 gtccgagttt caagagagga tccccagagg agttctacgg acattcagat ggtcgtgaag 600 actccaaatg aagtcacacc atccctgaga accgtcagaa gacgtcttca agatgctgga 660 ctccatggac gacggccagc taagaaacca tcgatcagca agaagaacag aatcgcccgc 720 gtagcatggg ccagagctca tctccactgg ggacgtcagg attgggctaa tcacgtgttc 780 agcgacgaat ccaagttcaa tctgttcggt actgacggta tcaagtggat tcgccgtccg 840 gttggatgtc ggttcgatcc cagctaccag ctccaaaccg tcaagcatgg aggtggatcg 900 gtgatggtct ggggctgctt ctctgggact tcaatcggcc cgctgagaag aattacaagc 960 atcatggatc gctttgtgta tgaagacatc ttggagaaca caatgagacc ctgggcaagg 1020 tctactgtgg gccgggcgtt cgttttccaa caggataacg acccgaagca cacctcgaag 1080 cacatcaagg agtggttccg acgccgccac gtggatcttc tggactggcc aagtcaatct 1140 ccggacttga atccgatcga acacctctgg gagcatgtcg agagacagct tagaggggtt 1200 cgtgcctcga atgccaacca gaagttcgac caactccaag atgtctggca ggccatcccg 1260 atgtctgtca tcgacaccct tctcgactcg atgccaagaa gatgtcaaac ggtaatcgac 1320 gccaaaggct tcccaacgaa gtactaaagc tattttattc attttctatt attatttttc 1380 gtttaccggt ctatcctaga tctcagaagt caaagttcca tttaccggtt ttttgcaatt 1440 ttcatgaatt tttcgatttt ttttcaattt tttgaaattt tgactattct tgttgttgaa 1500 tcagtttctt ttaccgtttt aaactttgtc ttaaaatatc agattgatcc gggaagtttc 1560 agaaaagtta tgctcgaaaa actatttgcg aatacctttt tggccagtac tg 1612 // ID MARINER13_CB repbase; DNA; CBR; 1303 BP. XX AC . XX DT 13-MAY-2004 (Rel. 1, Created) DT 13-MAY-2004 (Rel. 1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA; mariner/Tc1 superfamily; Cb000107; MARINER13_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1303 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1303 RA Pavlicek A. and Jurka J.; RT "MARINER13_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (APR-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are 99% identical to the consensus. CC The central region harbors similarity to mariner transposases, CC however, no elements seems to contain an intact ORF. CC Distantly similar to BMMAR3 from Bombyx mori. MARINER13_CB CC contains perfect 26bp-long TIRs and is flanked by TA target CC duplications. XX SQ Sequence 1303 BP; 324 A; 299 C; 312 G; 368 T; 0 other; cagggtccgc caaaattacg tgtgcaagtg tagatgacgt tatctccaga agtagatgcg 60 agattaagac gaaatttaac agatagttta tttcaacgct tgaaatcata attcaacaaa 120 aattattcga ttctacctcc tttggcagcg accacggcac gaagtcgtcg agggaaggca 180 tcaatggtgg cacgcaggta ttcgacggat aatttgtccc attcctcaga caacgacttc 240 ttcagggcct cgatatttgc atgaggtctt gcgcagacct tattctgcag aactccccat 300 acggagtagt cgagcgggtt cagatcaggc gacgaagccg gccattcgtc ctttggtatg 360 aaggcgggga agtggtcctt gcaccactgt tgagccattt ttgcggtatg agcaggcgct 420 ccatcttgct ggaagatgta tttcttctga ccgaagtggt tttgagccca cggtagcaca 480 tgcttctcca gaatctcctc aacgtagtat ttttggttga ttttcacgcc tttatcaacg 540 aaaacaagcg gacacttccc atcatagcaa accgctccga aaaccatgat gctcgcagga 600 tgagaggctc gatggattgt tttaccacgc tcagctgctt gttgaatatt tgtggccagc 660 actcggtggt tttggctatt aaattcagcc tcgacactga agagtttctc gtccgagaag 720 atggtgataa gatgatcctt tttgcgcgtg ccagcgagaa ggcgcttcgc tttgatgagc 780 cgtttctcct tattggcttg ggatagaata gcagcttttg ttgctcgata agaggtcatc 840 ttcagctctt ttctgacaat tctcctcatt gatgtatagg agatatccat gtcatctgac 900 atctttttca tggaacgatg agcatttcgc ctgactttct cccggacggc cttgactttc 960 gctggagttc ttacagtcct cggtcttcct cttcccgtac ggtccttgag gtggccaagc 1020 tggttgaaac gacggatggt cgcgaaaacc gtgtttcggt gcactccgag tcgtttagaa 1080 atgtctcctg tgcttaaacc tcgcttgtaa aagtcgacga tcagagtacg atgaggactt 1140 gccgctgtca tttacctaaa acataaccga ttgggatgaa acttggcaaa ctaataaata 1200 atgaaataat taataaaaat tttaaaaaat tgcgcaccaa aagtgcgtca gtgcgcagcg 1260 ccatggcgtc aaagttgtgc acacgtaatt ttggcggacc ctg 1303 // ID Mirage1_CB repbase; DNA; CBR; 5748 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 21-MAY-2011 (Rel. 10.08, Last updated, Version 3) XX DE Mirage1_CB is a DNA transposon that belongs to the Mirage DE superfamily. XX KW EnSpm; DNA transposon; Transposable Element; transposase; KW Mirage superfamily; 2-bp TSDs; Mirage1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-5748 RA Kapitonov V.V. and Jurka J.; RT "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis RT briggsae genome."; RL Repbase Reports 4(6), 186-186 (2004). XX DR [1] (Consensus) XX CC Mirage1_CB is an autonomous DNA transposon that belongs to the CC Mirage superfamily detected previously in the C. elegans CC genome. The consensus sequences was reconstructed from several CC 99% identical copies. It contains 15-bp terminal inverted CC repeats and it encodes the 1039-aa Mirage1_CBp transposase. CC This transposon is characterized by 2-bp target site CC duplications. CC MirageN1a_CB and MirageN1b_CB are nonautonomous transposons whose CC autonomous counterparts were relatives of Mirage1_CB. XX FH Key Location/Qualifiers FT CDS join(420..482,536..685,858..917,1046..1294, FT 1338..1514,1518..1562,1605..1868,1904..2320, FT 2364..3101,3295..3558,3607..3744,3788..4030, FT 4083..4277,4366..4476) FT /product="Mirage1_CBp" FT /note="transposase" FT /translation="MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVK FT EMATLEDTSNVDFEMELEDMDKDEDTDEDDGGQTEFERLLTSQEDTFAEEA FT RKLNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRKQLKEGKNIVHNL FT NSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSSE FT MQKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGITYDCKIT FT TCCADQPAKRSFFGMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNLTV FT LDSKNGENGFSSKSSKVVEVIAPYNTPIDILHNTGEGLFDRIRKAIPLFPE FT IFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIENLRNGSDKTHVG FT DCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSNTQ FT APTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLLST FT FSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFRFLLHT FT SLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKENIP FT IESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTCFRFVAAVVTTS FT LVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVE FT GSLSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPSTSS FT SSRLFVDENQRKHARGTDYTRGNLYTATVNQKWSPIGFAATQLYDMETGSA FT FDRETCERNIEKMIKNDRDIDYMEWLNLASKCREEGKDLLEKFSLGMATQT FT ALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEELELPSRKTFRL FT SDILTENVVCNWTSTQFDAHTKRLALHVWDAVVDNADELLVCYGSSQKENK FT YVPVNPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVRA FT RYNAKFGKSQSEQAAIWLHDELMKGEASELKS" XX SQ Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other; cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga 60 ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc 120 tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt 180 tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat 240 ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca 300 aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta 360 gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca 420 tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa 480 gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca 540 ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga 600 agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac 660 ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg 720 gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat 780 ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt 840 agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg 900 aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta 960 acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg 1020 actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt 1080 ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat 1140 ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt 1200 tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc 1260 aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat 1320 caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta 1380 gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc 1440 catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca 1500 ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc 1560 cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct 1620 ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac 1680 tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg 1740 attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg 1800 caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta 1860 ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc 1920 agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc 1980 cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga 2040 aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa 2100 ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat 2160 gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag 2220 taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt 2280 ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt 2340 atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt 2400 ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat 2460 gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc 2520 attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa 2580 gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt 2640 ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag 2700 atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt 2760 atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg 2820 tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga 2880 cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga 2940 tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa 3000 tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag 3060 aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta 3120 gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta 3180 agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca 3240 atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg 3300 cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca 3360 agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa 3420 catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa 3480 tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt 3540 gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat 3600 ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg 3660 ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg 3720 ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc 3780 ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt 3840 agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga 3900 attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt 3960 atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg 4020 ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc 4080 aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat 4140 atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg 4200 ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca 4260 agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt 4320 ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc 4380 cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat 4440 gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta 4500 ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca 4560 tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa 4620 tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta 4680 accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt 4740 aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt 4800 cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt 4860 accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt 4920 cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta 4980 cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca 5040 gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat 5100 tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca 5160 ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat 5220 attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg 5280 agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg 5340 gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg 5400 aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg 5460 aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt 5520 tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa 5580 gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt 5640 tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac 5700 gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg 5748 // ID MARINER47B_CB repbase; DNA; CBR; 1082 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000028; Cb000211; DNA; MARINER47B_CB; MARINER47_CB; KW mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 219-1076 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1082 RA Pavlicek A. and Jurka J.; RT "MARINER47_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (NOV-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are ~85-95% identical to the consensus. CC Contains ~14bp-long imperfect TIRs and is flanked by TNA target CC duplications from the C|TNA|G target motif. MARINER47B_CB is CC a subfamily of MARINER47_CB. XX SQ Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other; caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt 60 taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa 120 aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc 180 ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg 240 tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat 300 tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg 360 attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga 420 taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct 480 ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca 540 agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga 600 actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt 660 gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt 720 tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat 780 ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa 840 gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt 900 aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca 960 tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc 1020 gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct 1080 tg 1082 // ID GYPSY6-I_CB repbase; DNA; CBR; 4218 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW LTR Retrotransposon; Transposable Element; 5bp TSDs; Cb000288; KW GYPSY6-I_CB; GYPSY6-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-4218 RA Pavlicek A. and Jurka J.; RT "GYPSY6_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 235-235 (2004). XX DR [1] (Consensus) XX CC The internal part contains one large putative ORF and thus the CC family CC was probably autonomous. Flanked by 5bp target duplications. CC Related CC to GYPSY5-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, and GYPSY3-I_AG. LTRs CC are CC listed as GYPSY6-LTR_CB. CC GYPSY6-I_CB_ORF: 22-4126 (1368 aa) CC TGDQAKAMADLTQQIASLISVFGQLVPSQATTSTNGSQLVESISTRIPNFIYEPDEDLTFDSWYNRYGDV CC ITKDGSTLTDEAKARLVLSKLNTKEYSHFANRILPETPNSLKFEDLFPKLKETFKSTSSIFRKRQEFLRT CC EYDGSSIEEYTGLVLRRFTSSEFKTMTDDQTCCMVWINGLRDNSYSDIRTKALQIMEAKPTCTLLELEKE CC IKRLLDVRADSKSVCSAAKQNEINAIHQKASSRDKSQKPPPSPCFKCGGKHWARDCQKQVKCTLCQKDGH CC IAKFCRTKKRDANVQKGNFSKVKSVIVGSATNSQRNRIYRVVTINGMKIQMQLDTGADVTLIRTKDWNRL CC GRPSLLAPTIQVKSANHQPIAVKGSFQCQFNLNGTSATGIAHVAETGTLLGTDWISKDKKLWNILNPSQI CC SAVHSDAGSACNYLDITRNRLKAELNNEFSDVFKPELGRCTKTKASLLLKPDAKPVFRKARSVPFAALPT CC VSEELDRLQQAGVISPVDHSEWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFVTLNGG CC KYFSQIDLAEAYFQIELDEQAKKMLCINTHKGLFSYNRLAFGVKSAPGSFQQIMDSMITGLEGTAAYLDD CC IIISGSTIEEHNQRLMALMKRINDYGFRIRLEKCTFLMERITFLGFIIDKDGRRPDPEKIAAVQQMPPPT CC NDGQVRSFLGFIQFYGSFVKELFRLRPPLDALTKKDAKFLWTSQCQNSFDRVKQILQSDLLLTHFDPKLP CC IIVAADASQYGIGAVISHRFPDGSEKAIYHISKALTAPQRNYSQIEKEAFGLIKAVTKFHKFLYGRHFTL CC KTDHKPLLSIFGDKKGIPLYSANRLQRWAIILLNYDFTIEYVNTNHFGQADALSRLISDQIQQKECEDRI CC VAQVESEVITNLVSACERLPVTANMIRAASKKDPLLNQVYKYVVSGLWPKIIDKSSQISFFHHRRDQLSI CC VADCIMFNDRIVIPSTLKARVLKMIHRAHPGIVRMKQLARSLVYWPSIDKDIENMVRSCDQCAAVAKNPI CC RNTLCSWPIPTAPWQRVHADYAGPLDGTYYLVVVDAFSKWPEVFPTTSITTTATINILRKVFSQFGDPQT CC LVTDNGTQFTSSGFENFCKDRGITHSRSPPFHPQSNGQAERFVDTLKRSLGKLKGEENADTALYVFLQSY CC RSTPCTSSPNGSTPAENFIGRKIRTFLDQLRPKDQLPNSHDTEMEKQFNKQHGARSRSYQVGEKVYVKDY CC RNINTATWIPGTIQKRIGQTMYHVAVNDTVWTRHTNQLRRRDAPIQFDVPLDTMDPIDVTPTATQLPSSS CC THTTPSPVNTPAKPKTPPPKQYRKSTRIINQPPRLVMKPNQKSYH. XX SQ Sequence 4218 BP; 1269 A; 1099 C; 876 G; 974 T; 0 other; actggcgatc aggcaaaggc aatggctgat ctcactcaac aaatcgcctc cttgatatca 60 gtcttcggac agctcgtccc atctcaagcg accacgtcaa ccaatggaag tcagctcgtg 120 gaatcgattt caactcggat tccaaacttc atatacgagc ctgatgagga tctgacattt 180 gacagttggt acaacagata tggagacgtc atcaccaagg acggatcaac tctcaccgat 240 gaggccaaag caaggttagt tttatctaaa ctcaacacaa aagagtattc tcactttgca 300 aatcgtatcc tcccggaaac tccaaactcc ctaaagttcg aggacctctt tccgaagctc 360 aaggagacat tcaagtcgac ctcatcgatc ttccggaagc gtcaggagtt cctacgcaca 420 gaatacgatg gctcatcgat cgaagagtac actgggctcg tgttgcgacg gttcacgtca 480 tcagaattca agacgatgac ggacgatcaa acatgctgca tggtctggat aaatggatta 540 agagacaaca gctactcgga catccgtaca aaagcacttc agatcatgga agcaaagcct 600 acatgtacac tgctcgagtt ggaaaaggaa atcaagcgtc tactagatgt gagagccgat 660 tccaagagtg tgtgcagcgc tgcaaagcag aacgagatca atgccattca tcaaaaagca 720 tcaagtcggg ataaatcaca gaagccacca ccttcacctt gtttcaaatg cggaggcaaa 780 cactgggcca gagactgtca gaagcaggtc aaatgcactt tgtgtcaaaa agacggacat 840 attgccaagt tttgcagaac caaaaaacgg gatgcaaatg tacaaaaagg caacttcagc 900 aaagtcaaat cagtcatcgt gggatcggct accaattcgc aacgcaaccg tatctaccgt 960 gtcgtgacca tcaacggaat gaagattcag atgcagttag acacgggagc tgatgtcaca 1020 ctgataagaa ctaaagattg gaatcgattg ggtcgcccat ctctactggc acccactatc 1080 caagtcaagt cggctaatca tcaaccaata gccgtcaaag gatcattcca atgtcaattc 1140 aatctgaatg gaacatcagc aacaggaatc gctcatgttg ctgaaactgg aactcttctg 1200 ggaaccgact ggatctcaaa ggataagaag ctctggaaca ttctcaaccc aagtcaaatc 1260 agcgcagttc attccgatgc tggatcagca tgcaactacc tggacatcac tcggaacaga 1320 ctgaaagctg agttgaacaa cgaattttca gatgtgttta aaccagaact aggacgatgc 1380 accaaaacca aggcatcgct cctactcaaa ccagatgcca aaccagtgtt ccgtaaagct 1440 agatcggtcc cattcgccgc attgcccact gtgtcagagg aactagatcg tctacagcaa 1500 gcaggcgtca tctctccagt ggatcattcc gaatgggcag caccaattgt actagtcaaa 1560 aagaagaatg gatcgctaag gatgtgcgca gatttctcta cgggtctcaa tgatgccatc 1620 caactgcatc agcatccact cccaaccgcc gacgacatct tcgtcactct aaacggtggg 1680 aagtattttt cacagattga tcttgccgaa gcttattttc agattgaact ggatgagcaa 1740 gccaagaaga tgctatgcat aaacactcac aaaggattgt tcagctacaa tcgactggct 1800 tttggagtca agtcagctcc tggatccttc caacaaatca tggattcgat gatcactggt 1860 ctcgaaggga cagctgctta ccttgatgac atcatcatct cgggctcaac aattgaagag 1920 cacaaccaaa gattgatggc actgatgaag cgaatcaatg attatgggtt ccggatccga 1980 ctggaaaagt gcacattctt gatggaaaga atcacatttc tgggattcat catagacaaa 2040 gatggaagac gtccagatcc tgaaaagatc gctgccgttc agcaaatgcc accacctacc 2100 aacgacggcc aagtccgttc gtttctcgga ttcattcaat tctatggatc gtttgtcaag 2160 gagttgttca ggctccgccc accactggat gctctcacca agaaggatgc caaattcctc 2220 tggacgtctc aatgtcaaaa ttcattcgac cgtgtcaagc agattctcca atcggacttg 2280 ttgctcacac actttgatcc gaagcttccg atcatcgtcg ctgccgatgc ctcgcaatac 2340 ggtatcggag cagtaatctc acacagattt ccagatggct ccgagaaggc tatctaccat 2400 atcagcaaag ctctaacagc tccacagcgg aactacagtc agattgagaa agaagctttc 2460 ggactcatca aggctgtcac gaagttccac aaattccttt atggccgcca cttcactctg 2520 aagaccgacc acaagccatt gctgtcaata tttggagata aaaaaggtat acccctttac 2580 agtgcaaacc gtctccagcg ttgggctatc attctgctca actacgactt caccatcgag 2640 tacgtcaaca ccaatcactt tggacaagct gatgctctgt caagattgat ctcggaccaa 2700 atccagcaaa aagaatgtga agatcgtatc gttgctcaag tcgaatcaga agtcatcaca 2760 aatctggtat ctgcctgcga gcgactacct gtgactgcaa acatgatccg agctgcctct 2820 aagaaggatc cacttctcaa tcaagtatat aagtatgttg tatcaggttt gtggcccaaa 2880 atcattgata aaagctcaca aatctctttt ttccaccacc gacgagacca actgtcaatc 2940 gtggccgact gcatcatgtt caacgacagg atcgtcattc ccagcactct caaggcaagg 3000 gttctcaaaa tgattcaccg ggctcatcct ggaatcgtga ggatgaagca gttggcacga 3060 tctctggtat actggccatc catcgataag gacatcgaga acatggtcag gagttgtgat 3120 cagtgtgcag cagtcgctaa gaatccaata aggaacactc tatgttcttg gccaatccca 3180 accgctccct ggcaaagggt acacgctgac tatgctggac cactggatgg aacgtactat 3240 ttggtcgtgg tagacgcatt ctccaaatgg cctgaagtct tcccaaccac atccatcaca 3300 actacagcta caataaatat tctgagaaaa gtgttttcac aattcggaga tccgcaaacg 3360 ctggtaaccg acaacggaac tcagttcact tcatcgggtt tcgagaactt ctgcaaggat 3420 cgaggaatca cacattcacg atcaccacca ttccatccac agtcaaatgg tcaagcagaa 3480 cgtttcgtgg acactctcaa acggagctta ggcaagttaa aaggggagga aaacgcagat 3540 actgccttat atgtatttct gcagagctac cgctcaactc cttgcacctc cagccctaat 3600 ggctctacac cagctgagaa cttcattggt cgcaaaatcc gaacatttct ggatcaacta 3660 cgcccgaaag accaacttcc caactcgcat gatactgaga tggagaagca gttcaacaag 3720 caacatggtg cacgatcaag aagctaccaa gttggagaaa aggtttatgt taaagactac 3780 cgtaacataa atactgccac ttggattcca ggtactatcc agaagcgcat tggacaaact 3840 atgtaccacg tcgcagtcaa cgacaccgtc tggacccgac acaccaacca gctccgacga 3900 cgtgacgctc caatccaatt cgacgtgcca ctggacacga tggatccaat cgatgtgaca 3960 cctacggcta ctcaacttcc gagcagctcc acacatacca cgccatctcc agtgaacact 4020 ccagctaagc cgaagactcc accgcccaag caataccgga agtctactcg gattatcaac 4080 caacctccac gtttggtcat gaagcctaat caaaagtctt atcattgatt tttgttccct 4140 ttatttctag attaagtttg tagtctatcc cccacttaat catcctttcc cttctccttg 4200 ttccatctta aaaaggga 4218 // ID MARINER4_CB repbase; DNA; CBR; 1250 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Cb000007; DNA; KW MARINER4_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1250 RA Pavlicek A. and Jurka J.; RT "MARINER4_CB - an active family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(4), 115-115 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are >99% identical to the consensus, CC many have an intact reading frames (pos. 165-1179) encoding CC transposase. CC MARINER4_CB contains 28bp-long TIRs and is flanked by TA target CC site CC duplications. Similar to MAR_CE. CC MARINER4_CB_ORF: 165-1179 (338 aa) CC MFVPTAIHIRHVLIYLFLSHTTMKDSETFLKNVYNTHAPHYNTIRNWFHRFEKDDFSLDEKDRSGRPREL CC DLDKLKHALQSDPFQSSRELAVTFGVHHSTVLEGLKSLGMRKLFGRFIPHHLTQANLDRRVDDSITLLTL CC HAGDRWLDRLITGDEKWVFYDNHHRKSQWVGEGESPQDVPKPDLHPKKVMLSVWWGVDGPIYWELLPEGK CC TITGDLYTTQLRNLKKAVDRSALKDKKVYYQHDNARPHVSKQVKQELMGYGWNVLPHPPYSPDLAPSDYW CC LFGDMTRAFEGRSFNSRGAVEAALKQYFASRPAGFYRNGIHKLRERWRHVVDNDGQYN. XX SQ Sequence 1250 BP; 345 A; 303 C; 270 G; 332 T; 0 other; ttaggttggc gggaaagtct ttgtcactct gtttgtttaa tcactgttct cgtatatgga 60 ggctgtgtat gatatcgact ctagtgaata acaaggtgat aagaaccttc catataaaca 120 agtccccatc tccttccctg ctcctcatct gtaattgaaa cgatatgttt gttcccactg 180 ctattcacat cagacatgtt ttgatttacc tcttcctatc tcacaccacg atgaaggatt 240 cggaaacttt cttgaagaat gtgtacaaca cacatgcccc tcactacaat actattcgca 300 attggttcca tcgtttcgaa aaagatgact tctcgctcga tgaaaaggat cgctctggga 360 gaccccgtga gttggatttg gacaagctga agcacgcatt gcaatcggat ccatttcaat 420 ctagccgtga actagctgtc acattcggag ttcaccatag cacagtcctt gaaggtttga 480 agtctcttgg aatgagaaaa ctttttggtc gattcatacc tcatcacctg actcaagcca 540 accttgaccg ccgagtcgac gattcgatta ctcttctcac tctccacgcg ggcgatcgat 600 ggctggaccg gctaataacc ggagatgaga agtgggtctt ctacgataat caccacagga 660 aatcccagtg ggttggagaa ggagagagcc cacaggatgt ccccaaaccc gaccttcatc 720 cgaaaaaagt tatgctctct gtgtggtggg gagtggacgg ccccatctac tgggaacttc 780 tgcccgaggg caaaacaata actggagacc tctacactac tcaactacga aacctcaaga 840 aagcagtcga ccgttcggcc ctgaaagaca agaaagtgta ctatcaacat gataacgctc 900 gcccacatgt ttcgaaacaa gtgaagcagg agctgatggg atatggatgg aatgttctcc 960 ctcacccccc gtattctcct gatcttgctc cttccgacta ttggttattt ggcgatatga 1020 cacgtgcctt cgaaggaaga agcttcaatt cccgtggagc ggtcgaagcg gcactcaaac 1080 aatactttgc ctcacgcccg gctggattct accgcaatgg aatccataaa ttgagggaac 1140 gttggagaca tgttgttgat aatgatggac aatataatta attattcggt tattttttct 1200 ttgagaaata aactattgaa aaagtgacaa agactttccc gccaacctaa 1250 // ID DNA2-15B_CB repbase; DNA; CBR; 1552 BP. XX AC . XX DT 02-MAY-2006 (Rel. 11.04, Created) DT 02-MAY-2006 (Rel. 11.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; DNA; Cb000275; DNA2-15B_CB; DNA2-15_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1174 RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1552 RA Pavlicek A. and Jurka J.; RT "DNA2-15B_CB - a subfamily of nonautonomous DNA transposons."; RL Direct Submission to Repbase Update (02-MAY-2006). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl genome CC annotation. Copies are 96% identical to the consensus. CC DNA2-15B_CB contains 34bp-long imperfect TIRs and is flanked by CC AT target duplications. Central part is similar to DNA2-7_CB. CC Subfamily of DNA2-15_CB. XX SQ Sequence 1552 BP; 518 A; 259 C; 264 G; 511 T; 0 other; ataagaagta gcgattttca aaatttttaa ttctcgaagg aataaacaaa aatggtccaa 60 atttctgtaa ttcgtcacag aaaatactaa actactgata aatgtcataa tcgatgtgtt 120 tttgtccaga aatactttat ttcaacgcaa tcatgaaaaa tatggtttta attacattat 180 ttctgttgat tttcaatttt gcgaaaagtt acgtgatgca cagaaattga aggcttcgaa 240 ttctgggaat ttggaaattt tacgtgattc acagaaattg aacgtttcaa tttctgggat 300 ttttcacaga actcgaacgg ttcgagttct gggattttgg aaattcacgt gattcacaga 360 actcgaagct ttcaatttct gggattctgg aaaagcatgg gggggtaggg attcaagaag 420 ggtcgtgata aagcaaaatg aatattagga aactatcgtt ggacttgttg ttttccataa 480 aacggatcct tcgagcttga agataattgt tttccatggg agctctatgt tggctgaaaa 540 actagttgaa aattctgaat cgtattggaa gggttgaagt aaaaaaacat ttttattcga 600 aacttactat tgtcacatac agtactttag gatgaaattg gttgagatgg tggaaaaatg 660 ttgttcaaaa gctataaaag attccacttg gtgttttgaa aaactggcaa cactgatttt 720 taatgattta ccgtcgaaga aaactgaaaa actgaacgtc gaagaaaact cagttttctt 780 cgacggaaaa tcaataaaaa tccgtgttgc caatttttca aaactttttc aaattttcaa 840 aacatcacgt ggaatctttt atagcttatg aacaaaaatt ttccactatc tcgatcaatt 900 tcatttaaaa gtactgtatg tgacaaaggt aagttttaag ctttgtattt atatttttac 960 ttcaaccctt ccaatgcgac tcagaatttt caactagttt ttcagccaac agagagctca 1020 catcgaaaaa ttatcttcaa gctcgaagga tccgttttat ggaaaacaac aagtccaacg 1080 atagtttcct aatattcatt ttgctttatc acgacccttc ttgaatccct accccccccc 1140 ccatgctttt ccagaatccc agaaattgaa agcttcgagt tctgtgaatc acgtgaattt 1200 ccaaaatccc agaactcgaa ccgttcgagt tctgtgaaaa atcccagaaa ttgaaacgtt 1260 caatttctgt gaatcacgta aaatttccaa attcccagaa ttcgaagcct tcaatttctg 1320 tgcatcaagt gttctttttt atcaccgaat aaatatatat ttgtgtatcg aaaaaattct 1380 attgcaagta caggaaatac tactcgaaaa ggctttatcg ttttttatgt aaatttgaac 1440 atttttttcg ctccgcaaag aaaatgcgaa attactgaaa cttcacagaa attttggaaa 1500 tcgaagtgat ttgggatgaa aattgaaaat tttgaaaatc gctccttctt at 1552 // ID Mirage1_CB repbase; DNA; CBR; 5748 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Mirage1_CB is a DNA transposon that belongs to the Mirage DE superfamily. XX KW Mirage; DNA transposon; Transposable Element; 2-bp TSDs; KW Mirage superfamily; Mirage1_CB; transposase. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-5748 RA Kapitonov V.V. and Jurka J.; RT "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis RT briggsae genome."; RL Repbase Reports 4(6), 186-186 (2004). XX DR [1] (Consensus) XX CC Mirage1_CB is an autonomous DNA transposon that belongs to the CC Mirage superfamily detected previously in the C. elegans CC genome. The consensus sequences was reconstructed from several CC 99% identical copies. It contains 15-bp terminal inverted CC repeats and it encodes the 1039-aa Mirage1_CBp transposase CC (pos. 420-4479; 13 exons). This transposon is characterized CC by 2-bp target site duplications. MirageN1a_CB and MirageN1b_CB CC are nonautonomous transposons whose autonomous counterparts were CC relatives of Mirage1_CB. XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="Mirage1_CBp" FT /translation="MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVK FT EMATLEDTSNVDFEMELEDMDKDEDTDEDDGGQTEFERLLTSQEDTFAEEA FT RKLCNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRKQLKEGKNIVHN FT LNSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSS FT EMQKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGTITYDCK FT ITTCCADQPAKRSFFGMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNL FT TVLDSKNGENGFSSKSSKVVEVIAPYNTPIDILHNTGEGLFDRIRKAIPLF FT PEIFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIENLRNGSDKTH FT VGDCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSN FT TQAPTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLL FT STFSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFRFLL FT HTSLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKEN FT IPIESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTCFRFVAAVVT FT TSLVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGL FT VEGSLSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPST FT SSSSRLFVDENQRKHARGTDYTRGNLYTATVNQKWSPIGFAATQLYDMETG FT SAFDRETCERNIEKMIKNDRDIDYMEWLNLASKCREEGKDLLEKFSLGMAT FT QTALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEELELPSRKTF FT RLSDILTENVVCNWTSTQFDAHTKRLALHVWDAVDNADELLVCYGSSQKEN FT KYVPVNPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVR FT ARYNAKFGKSQSEQAAIWLHDELMKGEASELKS" XX SQ Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other; cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga 60 ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc 120 tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt 180 tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat 240 ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca 300 aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta 360 gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca 420 tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa 480 gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca 540 ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga 600 agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac 660 ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg 720 gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat 780 ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt 840 agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg 900 aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta 960 acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg 1020 actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt 1080 ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat 1140 ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt 1200 tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc 1260 aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat 1320 caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta 1380 gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc 1440 catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca 1500 ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc 1560 cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct 1620 ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac 1680 tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg 1740 attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg 1800 caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta 1860 ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc 1920 agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc 1980 cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga 2040 aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa 2100 ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat 2160 gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag 2220 taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt 2280 ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt 2340 atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt 2400 ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat 2460 gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc 2520 attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa 2580 gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt 2640 ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag 2700 atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt 2760 atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg 2820 tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga 2880 cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga 2940 tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa 3000 tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag 3060 aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta 3120 gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta 3180 agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca 3240 atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg 3300 cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca 3360 agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa 3420 catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa 3480 tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt 3540 gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat 3600 ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg 3660 ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg 3720 ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc 3780 ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt 3840 agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga 3900 attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt 3960 atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg 4020 ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc 4080 aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat 4140 atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg 4200 ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca 4260 agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt 4320 ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc 4380 cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat 4440 gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta 4500 ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca 4560 tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa 4620 tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta 4680 accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt 4740 aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt 4800 cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt 4860 accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt 4920 cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta 4980 cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca 5040 gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat 5100 tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca 5160 ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat 5220 attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg 5280 agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg 5340 gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg 5400 aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg 5460 aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt 5520 tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa 5580 gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt 5640 tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac 5700 gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg 5748 // ID LINE2C_CB repbase; DNA; CBR; 3234 BP. XX AC . XX DT 08-JUL-2004 (Rel. 1, Created) DT 08-JUL-2004 (Rel. 1, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LINE retrotransposons - a DE consensus. XX KW LINE; Cb000207; LINE2C_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-3234 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-3234 RA Pavlicek A. and Jurka J.; RT "LINE2C_CB - a family of LINE retrotransposons."; RL Direct Submission to Repbase Update (JUN-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are 98% identical to the consensus. CC Distantly similar to LINE2A_CE and LINE2E_CE. No functional ORF CC detected. XX SQ Sequence 3234 BP; 940 A; 530 C; 964 G; 797 T; 3 other; taataatata tttatttgca atgcatgggg gaaatcgata gataatttgg caagaaatgg 60 gacctgtaca aataaaagaa gtaaaatgac cagacggacc gacnagagtc ctgtaggtca 120 agtgggaggg atcagaatat cataaggaat cgctcctact cgcttagcaa acgccaccgg 180 actgagctta gaatttatca ccttacatac acggttccac atagacaagt ttctgtgaag 240 gaagcagtca aagtattgac cgttgatttt gaacaaatac ggggctctgt tagaatggct 300 gggaagaatg taggacgaca tagagggaaa atggtatgag tttataacaa ttttgtgata 360 ggtacgaaga actagaaggg tgcggcgatg aagggtggtt agcatagaga actgggatag 420 gcgatcggtg tatgaattga agggcatatt acatctctgg aagacttttc tggtgaaata 480 acgaagagga gattctagtt tattggcaag tgtggcattg gatggatcga aaagttcaca 540 accgtattcg aggaccggtc taatgtaggt gtcgaagaga cggaaatata aacaagggtt 600 tttcgattgg aacgttttca gtatttggcg ggacttgagt ttagcagagt aggcaataag 660 attgatgtgt ttgtcgaatt gaagttgatc atcaactagt atacctaggt ccttgaatga 720 gcgatgcgga gtaatggggg atcccttaat aaagtaaact gtcttaggat tgcgtttacc 780 ataatgcata acggccgtct tattttcggc tagtttgagt ctccagatgt cacaccagtg 840 ctcgacgatt tcgatacttc tctgcatatc caatgggtcg gaaccggtta tttttaggtc 900 gtcggcgaac gccgtgacat gaacattggg aggaaagagg ccgagtaagt cgttaatgta 960 gatcagaaac aaaaaggggc cagtgacact tccttggggg actccggatt tgacaacaat 1020 ctcgctggtt gacattaggc cattaacctt gacgttggat gagcggttgc tgagaaagga 1080 ctcgaaccaa acgcagcatc gttcatcaat acctattcgc ctcattttca gcagcaagag 1140 attgtgtggg acagtgtcga atgccttgcg aaaatcaaag taaataacat ctacgaattg 1200 ttgcttattt gctaaggttt tctgtattct ggaagtggac tcaaggacgg ctagaacaca 1260 ggatcgctta ctgacgaatc cgtactgatt cggagaaata ctcggaccga taacacgctt 1320 tagctcttca aggactaatc tttcgaagag tctggaaagt gcatgagtga gcgttatggg 1380 tctgtagtta ttagcgtcat atttggatcc cttcttgaat attgggctaa caaccgagtg 1440 cttccagatc tcaggaaatt tggcggagga gaaggattct tggaagatga gcgaaagagg 1500 gatggttatc gcatcactgc actttttgat tacaaggaag ttgataaaat ccggggagaa 1560 accgactttt gagggtagag aaccgatgtg ctttgcaata tttagaggag aaaaatcagg 1620 acagacggca aagggagcga tagcagggag ggcggagaaa ggagggcttg ggggcgagaa 1680 ggcctcttgg aagacggaag aaaattcgtt ggctagttca gaagcgtctg aggataaggt 1740 gccattaacc aggagagaaa tgggacagtg cgggggacgg agtctagatt taacgaaatg 1800 gaagagttct ttggggttct tgttgttgat aatagaaagc tcctcccttg cacgcgccct 1860 cttaactcga ttgagctgtc gccgaacaag cagtttgagc tggggtctag ggagggacgg 1920 gttgcgacgt tggatgaacc tgaaaacctt gggttttcta tgcgagaagg ttggacgacg 1980 agcacggacg gttggagtgt agaggactac gagctcgttg aaaatggcgg agaaatgagc 2040 aagtttcgaa tcaaccgtgg agaagaaaga tagctgcctg ggccagttgt aagagcagag 2100 atgatccaaa agacgcttga cgtcacattt tatatagtct agacgttttg acgaggtagt 2160 gttgaggatg ggtgaaggag gagaaatact aggtaggatt gtttcgaaga ggacagagga 2220 atggtcagag agcaggaagg gtggaagatt cacggttttc gagatgtgtt gcggcttgtt 2280 acaaaatact aggtctaaga agttttcagc accgcaatga ctggttctgg ttgggaagtc 2340 tactatctga gtcagatcgg atagtgacat caggctttcc aggccagcag gcaaatcatt 2400 aggcagaagg ttatcagaag accagtttat ctgcgggtaa ttgaaatcac cgagaaggaa 2460 attgaagcga taactgttgc tgagcagtaa agatagattg tgaaaaagta catcggattg 2520 ggctggtgag gtggacggag gacggtatac taagacgaat cggcaactta tctgaagcag 2580 atcgacagtg ataatttcgc agtggtgtag ggggtaaaac tgggagctga gactatcagc 2640 ctctaccagc tgtatgtctt tgcgggcgaa naccgcgacg ccacctccct tgcctttagg 2700 gttaggggac cgtctgtcga agcgaagaca atgaagggtc gaagatgagg agagagagtc 2760 agggacggat ggggagagaa aggattcagt aacaaaatga aggtcgatct ggttgtctag 2820 catgtcagag tgaagtactt ggaggcgttc tgcagatgct atagatctga cattggagag 2880 tttgcaggag agatttatca cagctgattt gactgcggaa gcaggtaaag ggttcgtttt 2940 agggaggggt ttcaagggaa agggggacaa aactggggcg gcgatatgac acggggagat 3000 atcggagacg ggacgaggtg ccacggttgg acagacaata acatttgaat ggacatttat 3060 acttttaaac agacgttgag acatgcatgt ggtatcatga tggtagatgt ccgagcgggt 3120 ccggtggcna atttcctatg cagaagagga gggagcggct ccctgtgcag gggctttggg 3180 aaggggtctg gggtttgagc tctcaacaat agtaaggtct ctaacaaaat attt 3234 // ID MirageN1a_CB repbase; DNA; CBR; 1114 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 09-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE MirageN1a_CB is a nonautonomous DNA transposon that belongs to DE the Mirage superfamily. XX KW Mirage; DNA transposon; Transposable Element; Nonautonomous; KW nonautonomous DNA transposon; Mirage superfamily; MirageN1b_CB; KW MirageN1a_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-1114 RA Kapitonov V.V. and Jurka J.; RT "MirageN1_CB, a family of nonautonomous Mirage transposons in the RT Caenorhabditis briggsae genome."; RL Repbase Reports 4(6), 187-187 (2004). XX DR [1] (Consensus) XX CC MirageN1a_CB is a subfamily of MirageN1_CB nonautonomous DNA CC transposons that belongs to the Mirage superfamily detected CC previously in the C. elegans genome. These elements are CC characterized by 15-bp terminal inverted repeats and 2-bp CC target site duplications, they are over 97%identical to the CC MirageN1a_CB consensus sequence. This consensus sequence is CC 87% identical to the MirageN1b_CB consensus sequence CC representing the MirageN1b_CB subfamily.MirageN1a_CB and CC MirageN1b_CB are nonautonomous transposons whose autonomous CC counterparts were relatives of Mirage1_CB. XX SQ Sequence 1114 BP; 350 A; 210 C; 224 G; 330 T; 0 other; cacaggtgat tcgtgattga ccaattacag aagaagggct ataatcgacc caattactta 60 tctaccgcga acgagaggtt ctacaattga ccattcgcga gcaaaatgcg tatcttacta 120 actggcccta taaaaggtcc acaattgacc aatcgcgaaa aaattcttgt tttttatttt 180 ccgaacttct ttttcctatt ttggatactt tacttctttt ttcgccgttt tcttcgcaat 240 ttttgtccgg aatctattaa ttaacatata atactatact agaatactgt ataaccaaga 300 atgtatcgtt ttgtttgcag aaaaatagag aaaatggccg gaagacaaaa gtcggaagca 360 agaagccgaa atttcgaaaa actctggaag aagcattgct tctgtacttt caaaaggtaa 420 gaagcgtcca gaaagtccga atttttaatc taatttttac agggtgccag aaaatctcaa 480 ttttcctgta tgtcgactgg gcactccgga aaaatgcaac tgagaatgag gaaggaaaaa 540 gttctggaac agtgggtaaa tttgaaaacg aatatcagag aaaaaagttg atttcagacg 600 gaagtgttaa gttcgcggat ttcgaaaaaa tttccagtcg ataacttgtg tcagaggtat 660 agtacaaaaa gaattgggag cttaaaatct agataattca tttcagttac ttcgaaacaa 720 caatcaacat catcttctgc tcatcgtcat cgactgaggc aaaaatggac aaaacgagaa 780 gctccgatgc cgtttcagcc agttcgacaa cagcggaaga gaataatata acttttaatt 840 aattgttttt tcgcttttca ttgttttttc tgtgtaataa acaattttta gcagctgcta 900 gcttccagat tcgaaacaat atatgccaat tattgctctc gcgacaagcc aattgtagga 960 gatttgctcg cgatagggcg aatattggtc gtttgcggtg gcgcgttcgc gattggtctg 1020 taaatggcct gcggcaggca tgttccgatg tacccatggc gactttccgc gaacaatatt 1080 tcacctatta tagacgctgc gcgaatcacc tgtg 1114 // ID LINE2B_CB repbase; DNA; CBR; 2571 BP. XX AC . XX DT 13-MAY-2004 (Rel. 9.04, Created) DT 13-MAY-2004 (Rel. 9.04, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LINE retrotransposons - a DE consensus. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; CR-1; KW Cb000177; LINE; LINE2B_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2571 RA Pavlicek A. and Jurka J.; RT "LINE2B_CB - a family of young autonomous LINE RT retrotransposons."; RL Repbase Reports 4(4), 110-110 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC Distantly similar to LINE2C_CE, LINE2B_CE, and LINE2D_CE. CC LINE2B_CB contains a single open reading frames with endonuclease CC and RT domains. CC LINE2B_CB_ORF: 654-2397 (581 aa) CC MVSDEFRILSAPHCRAARALIKSRIRSSPKVPPLSANGCLITSEHEKSTLFTKTFSSNYNHLTSSASITP CC AISHQHLPFSGSDLEIFDPWIIEKLLRKLPPRCGYSPHSANYFIIKKCATTLALPLSIIFSDSLSTSHVP CC DSWKHAVVVPIPKKGSPSSPENYRPISLTDPFARIFERLVCDRIKWEFLHQFSSLQHGFLSNRSCTTSLV CC QSFSNYKATLLKYNTLDVVFFDFRKAFDQVHHQLLIQKLASFGVPKSYVAWFSSFLSGRTFSVKIYDFIG CC PPSSVIPSGVPQGSVSGPLLFLIFINDLLLELEQIPSLHLAAFADDIKLYSHDPIALQTGINMVVNWATA CC NHLPLAHSKTALLRLGSHNSSHPLNIAGVTLTPSSSVRDLGLITDSSLKFSAHINKITSLALLRSKQLLK CC SFRSKSPEFYIHLFKCYVLPILEYCSVVYSPPPSSRLALKLESPLRFFSKCIFQRCNIQYSSYSDRLSIL CC NMFSIRHRRLKAQLILLYKFLNGSAYFPNLNAHVKYSSSPRRPMNLIIVQPYSSDYFSXIVPLWNAITSQ CC VTRFLLPSEFESLISSSITRY. XX SQ Sequence 2571 BP; 594 A; 780 C; 317 G; 873 T; 7 other; cctccctcat tgctcatcta gataagttcc tccctcttga ttcctccatt cttntgnntg 60 attttatttt ccccagttta tcttggaatc cccttaacca taatcatcag tttgnntctt 120 ttctcacttc tagaggtctt caccaacatg tctgtttccc aactcgggtc tccgatacct 180 cagctaaaat tctggacctt gtaatctcct ctgatgatct tcctctttct aacgtcgccg 240 tcgagcctcc actgcttaac tctgaccact ttgccgtcaa gttccacatt cttcctacca 300 ctctcactcc tctatctcca tccatatctc gccctcgttt atggttcaag aaatgcaatt 360 tgcgctccct caactccgat ctcgccacca tcgactggga cctctcattt agtantttgc 420 cttctccttc cgaaaaattc actaaattta ttgatattct ttccacactt attcgtaatc 480 atactcctct gcttcctcca cccaaatcca aacccttttc tctaccattt cgaaagctta 540 aacgggcaag gcacctctac tccaagcttc ttaaaactcc aactacggct cccaggaaaa 600 ttctccatgt tcgaactcgt atcaaatctc tcactcgaac aatcaataag aaaatggtaa 660 gtgacgaatt ccgaatcctc tcagccccac actgtcgtgc tgcccgcgcc ctcatcaaaa 720 gtagaattag atcttcacct aaagtcccac ctctttctgc taatggctgt cttataacct 780 ctgaacacga aaaatccacc cttttcacca aaacattctc ttctaattat aatcatctca 840 cttcatccgc atccatcact cccgcaataa gtcatcagca tcttcctttt tctggctctg 900 accttgaaat cttcgatccc tggataattg agaagcttct tcgcaaactc ccgcctcgtt 960 gtggctattc tccccattcg gccaattact ttatcattaa aaaatgcgcc accactctag 1020 cattaccttt atcgattatc ttctctgact cactctccac gtcacatgta cccgactctt 1080 ggaaacacgc agtagtcgtt cccataccaa aaaagggttc tccttcatcg cccgaaaact 1140 atcgccccat ttcgcttact gacccattcg ctcgaatttt cgaacgattg gtatgtgatc 1200 gcatcaaatg ggaattcctc catcaattca gtagtcttca acatggtttt ctctccaaca 1260 gatcctgcac cacctctcta gttcaatctt tttcgaatta taaagctact cttttgaaat 1320 acaatacact agacgtcgtc tttttcgatt tccgcaaagc cttcgaccag gtacatcatc 1380 aacttctcat ccagaaactt gctagctttg gagtccctaa atcttacgta gcttggttct 1440 cctcgtttct ctctggtcga acgttctctg tcaaaatcta tgattttatt ggaccccctt 1500 cctctgtcat tccctctggt gttcctcaag gatcagtctc cggtccctta ctatttctca 1560 tattcatcaa tgatctgctc ttagaacttg aacaaatccc ctctcttcac cttgccgcct 1620 ttgctgatga tatcaaattg tattctcatg acccaatcgc ccttcaaact ggtatcaaca 1680 tggttgtaaa ttgggctacc gccaaccatc tccctcttgc ccactctaaa actgcccttc 1740 ttcgcctagg ttcccataat tcttcccatc ctctcaatat tgcgggtgtc acacttactc 1800 cctcctcctc cgtccgggac ttgggactca ttactgattc ctctctcaaa ttctctgctc 1860 acatcaacaa aatcacatct ttagctcttc tccgttccaa acaactctta aagtcattta 1920 gatctaagtc tccagaattc tacattcatc ttttcaaatg ttatgttctc ccgattcttg 1980 aatattgttc tgtagtttat tcccctccgc cttcttctcg ccttgctcta aaactagaat 2040 ctcccttaag atttttctct aagtgtattt tccagcgttg taatatccag tacagttcct 2100 attctgatcg tctctctatc ctcaatatgt tctccattcg acatcgtagg ctaaaagctc 2160 aactaattct tctctataaa tttttaaatg gctctgccta ctttcctaac ctaaatgcac 2220 atgtcaaata ctcctcctcc cctcgtcgcc ctatgaactt aattattgtt cagccctact 2280 cctctgacta tttttctnca attgttcccc tgtggaacgc catcacttcc caagttaccc 2340 gatttctcct accttccgag tttgaatcct taatttcttc cagtattacc cgttattgat 2400 atatttgctc cctatttttc tttttctacc ggttacatct ttcctgtgtc aaatatctaa 2460 attatcccgt ttcccctccc ctactcagat cggcctcgtg aggggcattt tttctgagtc 2520 tttcatgtcc tgccctctaa tgttttatta cacctgatca ataaacaaat t 2571 // ID Mirage1_CB repbase; DNA; CBR; 5748 BP. XX AC . XX DT 09-JUL-2004 (Rel. 9.06, Created) DT 19-JUL-2005 (Rel. 10.08, Last updated, Version 2) XX DE Mirage1_CB is a DNA transposon that belongs to the Mirage DE superfamily. XX KW Mirage; DNA transposon; Transposable Element; transposase; KW Mirage superfamily; 2-bp TSDs; Mirage1_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-5748 RA Kapitonov V.V. and Jurka J.; RT "Mirage1_CB, an autonomous DNA transposon from the Caenorhabditis RT briggsae genome."; RL Repbase Reports 4(6), 186-186 (2004). XX DR [1] (Consensus) XX CC Mirage1_CB is an autonomous DNA transposon that belongs to the CC Mirage superfamily detected previously in the C. elegans CC genome. The consensus sequences was reconstructed from several CC 99% identical copies. It contains 15-bp terminal inverted CC repeats and it encodes the 1039-aa Mirage1_CBp transposase. CC This transposon is characterized by 2-bp target site CC duplications. CC MirageN1a_CB and MirageN1b_CB are nonautonomous transposons whose CC autonomous counterparts were relatives of Mirage1_CB. XX FH Key Location/Qualifiers FT CDS join(420..482,536..685,858..917,1046..1294, FT 1338..1514,1518..1562,1605..1868,1904..2320, FT 2364..3101,3295..3558,3607..3744,3788..4030, FT 4083..4277,4366..4476) FT /product="Mirage1_CBp" FT /note="transposase" FT /translation="MPRTTHKEVRPFHGMGSNDTSSQERRVGEDDVPYAVK FT EMATLEDTSNVDFEMELEDMDKDEDTDEDDGGQTEFERLLTSQEDTFAEEA FT RKLNKCVDSATATFVRIGSRSQLKELVELYIDKIMEIRKQLKEGKNIVHNL FT NSPFFSKYWKAELQNHLNLSTVISIDGIQISGNKKKLWPVSLVLVDLPSSE FT MQKSCNLILEGAVECSENPSTLLWNAIFGKIRSDVEAHTGRVGITYDCKIT FT TCCADQPAKRSFFGMKGHSSSMSCFYCLSEETLYKRGGVSRKEQRYGNLTV FT LDSKNGENGFSSKSSKVVEVIAPYNTPIDILHNTGEGLFDRIRKAIPLFPE FT IFPPDTKFIRKSDLFVIDPSSFARDIRRVYLHSNYENIENLRNGSDKTHVG FT DCKITVQNFRFQHLRLTLALTALVSDSMKPKARLVLIALGFLTNKMYSNTQ FT APTLFDIQLSAAAAWYLAEANKEYITMKTHELLYHLADVNKLFGNTGLLST FT FSFESFYQFSLCGYSTSITRFFLQNACTKFVHYFHFINPQPFNKFRFLLHT FT SLRREIVRRSKPLGTESLKRFLSLTPDLGSSHVTWDGRIRDVQKIDKENIP FT IESVLYSTMYLPLGSLISEYSSPQTNNDIVFASCKGRKTCFRFVAAVVTTS FT LVGALVEPIEAVSEDRKLMDLRKIRNSLSNADFYYYSEMVNQLINYEGLVE FT GSLSGRREVIPVDSILGVACYAMHYLTPNRSSRPAPYRLPLTTRTSPSTSS FT SSRLFVDENQRKHARGTDYTRGNLYTATVNQKWSPIGFAATQLYDMETGSA FT FDRETCERNIEKMIKNDRDIDYMEWLNLASKCREEGKDLLEKFSLGMATQT FT ALSNARNRRAPRETKTVSNLVGNIEKRGFSLDSAKCFDEELELPSRKTFRL FT SDILTENVVCNWTSTQFDAHTKRLALHVWDAVVDNADELLVCYGSSQKENK FT YVPVNPSIFTKMSGKITNQYVIKSAHTQTTSSRVLVKRTAKTEKPKNRVRA FT RYNAKFGKSQSEQAAIWLHDELMKGEASELKS" XX SQ Sequence 5748 BP; 1790 A; 1076 C; 1146 G; 1735 T; 1 other; cacaggtgat tcgcgacttg tctatcacga agctttatcc ataccgcatt tgatttcaga 60 ccaatcgcga aaacacagag ttcataatag acctatcgcg aacgccttcg cgataggtcc 120 tataatagac ctataataga cctataatag acctatcgcg aaaaccgcct gccggtgtgt 180 tttttatttc tttaaattct ttctggttct attttatatt tttctgattt ttattgaaat 240 ttttaagtgt attattttat ggtgagtgag ttaactactt ttttattgct ggaaaatgca 300 aatttctatt caattttcat cgagaaaatt gaatatcgat aactagtaca gtaagatgta 360 gctctagtgg tgaaactata aagataatgt gtgaaggata aactttatca gattaaatca 420 tgcctcgtac gacacataag gaagttcgac catttcatgg aatgggaagc aatgatacaa 480 gtaagattaa ttgttgtcca tcatcattgc atcattgtac aacgaacttt caggcagtca 540 ggaaagaagg gttggtgaag atgatgttcc gtatgcagtc aaagagatgg caacactcga 600 agatacttcc aatgtagatt ttgaaatgga attagaagat atggataagg atgaggacac 660 ggatgaggat gacggggggc agacaggtat tatgctagaa cttagagatt cactgtcctg 720 gtttagattt gaacagaatg atagaagaag tttcgacgcc cgtattgttg ttcgtaacat 780 ctaattgtat cagtagattg tcgaatagag gtaaatgata ggaaacttat gaaaacaagt 840 agtttttttc gcattcagaa ttcgaacgac ttttaactag tcaagaggat acttttgcgg 900 aagaggcgcg gaaattatgg tatcattaca aaagtaattt ttcatgccac aactactgta 960 acgcatgtgg tgagggactt ttgtcttcgc acgagaaatg gtaacggata tgtataagtg 1020 actgagcatt tctccctttt acagtaataa atgcgtcgac agtgctactg caacgttcgt 1080 ccgtattggt agcagatccc aattaaaaga attggtggaa ctatatattg ataagatcat 1140 ggaaatcagg aaacaactga aagaagggaa aaatatcgtt cataatttga atagcccctt 1200 tttctctaaa tattggaaag cagaacttca gaatcacttg aatctttcca ctgttatttc 1260 aattgatgga attcagattt cgggtaacaa aaagtagtaa tttttcactt aacctcggat 1320 caataatgca gttcaggaaa ttatggcctg ttagccttgt tttggtggat ttgccgtcta 1380 gcgagatgca gaaatcgtgc aacctgattc tagaaggagc agtcgaatgt agtgaaaatc 1440 catcaacttt actgtggaat gctatatttg gaaagatccg ttctgatgta gaagctcaca 1500 ctggcagagt tggaawcatt acttacgatt gcaaaatcac tacgtgttgt gcagatcagc 1560 cggtgcacta atatctccta gtttatcaat catcagtttt ttaggcgaaa agatccttct 1620 ttggtatgaa aggacattca tctagtatgt cttgtttcta ctgtctgagc gaagaaacac 1680 tgtacaagcg gggtggtgta agccgaaaag aacaacgata cggaaatctg actgtgttgg 1740 attccaaaaa cggagaaaat ggattctcat cgaaaagttc taaagttgta gaggtcattg 1800 caccttacaa tactccgatt gacattttgc acaataccgg agaaggactt tttgatcgta 1860 ttcggaaagg tatacactaa taatattcca gtatagtact gtagcgatac ctctatttcc 1920 agaaatcttt cctccagata caaaatttat ccgaaagtca gacttattcg tcattgatcc 1980 cagctcattc gcgcgtgata ttcgtcgagt atacttgcat tccaattacg agaacattga 2040 aaaccttcgc aacggctcag ataaaactca tgtaggagac tgcaaaatta cagtacaaaa 2100 ttttcgtttt cagcacctcc gtctcacgct tgctctgaca gccctagtat cagattcaat 2160 gaaaccaaag gctagactag ttctaatagc cttaggattt ctgacaaata agatgtacag 2220 taatacgcaa gctccaacat tgttcgatat tcagctgtcg gccgctgcag cttggtattt 2280 ggcggaagct aataaggagt atatcacaat gaaaacccac gtaagcagat agtggtattt 2340 atgaagtatt aagttgcatt caggaacttt tgtatcatct agcagatgtg aacaaacttt 2400 ttggaaacac cgggttatta tctacattca gctttgagag cttctatcag ttttcattat 2460 gtggttacag tacttccatc acacgtttct tccttcaaaa tgcatgcaca aagttcgtcc 2520 attattttca ttttatcaat cctcaaccct ttaataagtt taggttcctc ctacatacaa 2580 gtttgagaag agaaatcgtc aggcgttcga aacctctggg aaccgagtct ctcaaacgtt 2640 ttttatcgtt aacaccggat ttgggaagta gccatgtgac atgggatggg agaatccgag 2700 atgtgcaaaa gattgataaa gaaaacattc cgattgaatc ggttttgtat tctaccatgt 2760 atttgcctct tggatcttta atttccgagt atagctcccc tcaaacaaac aacgatattg 2820 tttttgcgag ctgtaaggga cgtaagacgt gttttcgatt tgttgcagca gtggttacga 2880 cgagccttgt aggagcgtta gtggagccga tcgaggctgt ttctgaagat cgaaaactga 2940 tggatttacg gaaaattcgc aattccttat caaacgcaga tttttattac tactcggaaa 3000 tggttaatca gttgataaat tatgaaggac tagtcgaggg ttctctttct gggcgccgag 3060 aagttattcc tgtagactcg attctaggtg tcgcttgtta tgttagtact gaatcttcta 3120 gtatttttgt gcaggccaac ggcgcctaca ttcataattg aaaagatgaa ttttaattta 3180 agctaagttg aatttttact ctcgattgtt atatatgaca tttttctccg ttaattttca 3240 atgaacttct caatcggaaa aaatatcgaa tggggataga ttttaaattt ttaggcaatg 3300 cattatctaa cacccaatag atcatcaaga ccagctcctt accggctccc tttgactaca 3360 agaacaagcc catctacatc ttcttcttct cgattgtttg ttgatgagaa tcagaggaaa 3420 catgctcgtg gaactgacta cactcgtgga aacttgtata cagccacagt gaaccagaaa 3480 tggtccccaa taggattcgc agctacacag ttgtatgata tggagaccgg aagtgcattt 3540 gaccgggaaa catgtgaagt gagcaattct gtagaactat taaaataaca taacctctat 3600 ttttagcgca acatcgaaaa aatgatcaag aatgacagag acatcgacta catggagtgg 3660 ctcaatttgg caagcaaatg tcgagaagaa gggaaagatc ttcttgaaaa gttctcgctg 3720 ggaatggcca ctcagacggc actggtaatt cgaaacagca gttcaaaaca aaatcttgtc 3780 ttttaagagc aatgccagaa atcgtcgtgc cccccgagaa acgaaaacag tatccaattt 3840 agttggaaat atcgaaaaaa gaggcttctc cttggattca gcaaaatgct tcgacgaaga 3900 attagaatta ccgagtcgaa aaacatttcg attgtcggat attctcacag aaaatgtagt 3960 atgcaattgg acttcaactc aatttgacgc tcatacgaaa cgcttggctc ttcacgtctg 4020 ggatgcagtc agtttgaaat tagaaccttg cagtaatact aacgatcaga ttgctcttgc 4080 aggttgataa tgccgacgag cttttggttt gctatgggtc ttctcaaaag gaaaacaaat 4140 atgttcctgt caacccttcg attttcacga aaatgagcgg taagattact aatcaatacg 4200 ttatcaagtc agcgcatact cagactacat catcgcgggt tttggtcaaa cgaacagcca 4260 agaccgaaaa acccaagtaa tttcctatct tcaatcttca ctcgagaata aattgtgagt 4320 ttgtccaagt tttcagctaa aatacctcat ctacctatat tcagaaatag agtgagagcc 4380 cgatacaacg cgaaatttgg aaaatcccaa agtgagcaag cagcgatttg gctacatgat 4440 gaactaatga agggagaggc atcagaattg aaatcgtgag tttttaaatt caaaaaatta 4500 ccactcttcc gctcagtcgc acttcaaaaa atggagaaat cgtaaagaaa aatcgaggca 4560 tcgccatttt catccaaaat aacctcacgt tggtttcatc ctagaagact ccgcgaccaa 4620 tagtgcgggc ttctgaaaat ttaagcggag agtacctata tattcggcaa ttgcacacta 4680 accgcgtttc ttcggtgata taaatcgatt tctcgtccca aaatcttaaa ttccatccgt 4740 aattagcaga aatttgtgct cagaattcga tttcatccgt tttaaacatg gctccgtttt 4800 cttctcgatt ataatactct tatataatga cggtgtttcc tgaaaattcg tgcggcgagt 4860 accttgaatt ctaataaaat taactaaccg ttcaatccaa caattctgat catagtgagt 4920 cgcgaatagt cgtaacagag tgcattggct gacttttgtt aacaaataaa atgagatgta 4980 cgcaaatgcg cgtcacggtg tcggcagact gggcagtcga gtcgtcgacc gtacctcgca 5040 gttgccaaaa cgtaggaaaa ttgaaaataa gtccgtcgct tattagaaat agttccgaat 5100 tcatcaaaga gaaaaagaga caaaaaacga tatgtttcta acaacaaaac aaaaagccca 5160 ataaacacat taaggaaaaa cgaattatgg gtcatcggct gacgaaaaac taatttcaat 5220 attttcgttc tattgtttct tccaattttt cttttcagac atcccctgaa cttcaattcg 5280 agcaatgtta gtggcgaaga cgctcccaac ttcagcggaa tcccaattac gacggatctg 5340 gagacgatgt cgacgacagc attgatattg aaggctgcta atgtattttg gagtttaagg 5400 aagttttctt ttcccatcac attgttaaat tgttctttat ttgttgcttt tttgttattg 5460 aataaacatc gttattattc taattcctta tttcgcatcg aatatttttt ttttaatatt 5520 tgcgataggt ctattatgga tagagttttc gcgataggtc tattgtaggt ttcggaacaa 5580 gcctattatg agtaaaatcg tcctcaattg gtctacaata ggtctattgc agaagtttgt 5640 tcgcgatagg cctattattg gtctataata ggcttcgtgc catgtaccca aatcacctac 5700 gcgcgaacca tttttcacct ataatagatc ttgcgcgaat cacctgtg 5748 // ID MARINER47B_CB repbase; DNA; CBR; 1082 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 21-SEP-2005 (Rel. 9.11, Last updated, Version 2) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000028; Cb000211; DNA; MARINER47B_CB; MARINER47_CB; KW mariner/Tc1 superfamily; MARINER52_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 219-1076 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1082 RA Pavlicek A. and Jurka J.; RT "MARINER47_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Direct Submission to Repbase Update (NOV-2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensemble CC genome annotation. Copies are ~85-95% identical to the consensus. CC Contains ~14bp-long imperfect TIRs and is flanked by TNA target CC duplications from the C|TNA|G target motif. MARINER47B_CB is CC a subfamily of MARINER47_CB. XX SQ Sequence 1082 BP; 332 A; 186 C; 196 G; 368 T; 0 other; caagggaagg ttttttagac aacggttgag aatttgctca aaatttgcat acttatagtt 60 taagacatgc tctatacgat gacgaaaaaa tttttagccc gttctcactc ccaggccgaa 120 aaactttgtc tgaaaatttg ggccgatttc ggtgcgctgg ggatttcggc ttccccttcc 180 ctcctctacc aattccgcgt gagaggaaaa tatcggttgt gtggtgttgt ggtaagaggg 240 tgactcatta ggattgacta tgctggttcg acccccactg tggtaaaact ttttttgcat 300 tttttgaaac taatttttga ttccaagttt gcccccctag gcactatatg acactttttg 360 attaatttca aaagttttca aagaaaaaaa gatttcatga gagtttgagg aaaaaataga 420 taatggtctt ttcgaccggt tcttacatcc tcgtatcgtt aaaaacgaaa atttcagtct 480 ctgaaagttg ctcaattttg ctctttttga ggtggagtac tgtcaaatcg atcacataca 540 agattcgaac ctatttctat aggtttcagt taagttcaag cgatatttca gaaattagga 600 actgtcaaag ttctaacaac aatcagattt tggagatttt ttgagcccaa agacaacatt 660 gggctgaaaa aatttgtcag aatgctattt ttatcgtttc tgaataattg gaacgttttt 720 tcgcactttt caaaaaattt tcaaaaaatc attttcaaag tgtggggacc ccatggtgat 780 ttttttcaaa atttttcaaa aaaaattttt ttttgaaaat gtttaaaagt tactttagaa 840 gatagaaaaa tgtccaaaaa tgagtttcgc actcaagcaa atcctgaaaa actaattttt 900 aacctcgaaa aatgcatgtt tttggccaaa atttagtact aaaagcactt tcagaggcca 960 tatttcggct ccttttgaga acgggctaaa aatttttttg gattcggatt cagcatgttc 1020 gaaagtacct ttgtacaaat tttgagcaaa ttctcaaccg ttgtctgaaa aaccttccct 1080 tg 1082 // ID GYPSY5-I_CB repbase; DNA; CBR; 4189 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of LTR retrotransposons - a DE consensus. XX KW LTR Retrotransposon; Transposable Element; 5bp TSDs; Cb000288; KW GYPSY5-I_CB; GYPSY5-LTR_CB; Gypsy clade; LTR. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 7-1266 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-4189 RA Pavlicek A. and Jurka J.; RT "GYPSY5_CB - a family of autonomous LTR retrotransposons."; RL Repbase Reports 4(9), 233-233 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. The internal part contains two putative ORFs CC and thus the family was probably autonomous. Flanked by 5bp CC target CC duplications. Related to GYPSY6-I_CB, GYPSY1-I_CB, GYPSY21-I_AG, CC and CC GYPSY18-I_AG. LTRs are listed as GYPSY5-LTR_CB. CC GYPSY5-I_CB_ORF: 37-2320 (761 aa) CC MADLTQQLASLITAFGQFVQNPASSPTSVPSNVSTRTSQLVESISTRIPNFSYDPDEEKTFDGWWNRYED CC IITKDGSSLTEDAKVRFVLSKLDSKEYYHFSNRVLPATPNSLKFTDLISKLSDTFKSTSSIFRKRQEFLR CC MEYDGSSIEEYTVLVLRRFTSSEFKKMTDDQTCCMVWINGLRDSSYIDIRTKALQIMESKPTTTLLELEK CC EIKRLLDIREDSKSVCRVQQPAEVNAINRKSSTDKSQKSQKPPPSPCFKCSGNHWARECQKKVTCLNCQK CC SGHIAKFCRTKVKGNECPKGKIKSVIIGSATNSQVNRIYRTVIINGKKLKMQMDTGADITMISIKDWKLL CC GRPELQSPTIQVKSANHQPIAVKGFFKCHFKLNGTSASGMAHVAETGTLLGTDWISKDPHFWRMLNANQV CC SKVSSDVGSACDYLDNMREGLKAELNKQFSDVFKPELGRCTKTKASLVLKPNAQPVFRKARPVPFAAVST CC VSEEIERLQKAGVISPVDHSDWAAPIVLVKKKNGSLRMCADFSTGLNDAIQLHQHPLPTADDIFATLNGG CC KYFSQIDLAEAYFQLKLDEQAKSMLCINTHKGLFRYNRLAFGVKSAPGSFQQVMDSMITGLDGTAAYLDD CC IIISGSTIEEHNKRLMALMKRINDYGFRIRLEKCTFLMERITFLGFVIDANGRRPDPEKIAAIDQMPPPT CC NDSQVRSFLGFIQFYGSLSRSCSSFVHHWMPLQRRMSNSNGLLNVNFHSTASSRFFVPICC CC GYPSY5-I_CB_ORF: 3154-4141 (329 aa) CC MNVLLFLKIQQKNTLCSWPIPTAPWQRVHCDYAGPVNGRYYLVIVDAFSKWPEVIPTTSITSTATINILR CC RIFAQFGDPETLVTDNGTQFTSSQFQSFCKDRGISHLRSPPFHPQSNGQAERFVDTLKRGLGKLKGEENT CC DTALYVFLQNYRSTPCSSSPDGSTPAENFIGRKIRTFLDQLLPNDQLLVSHDTEMEKQFNKQHGARRRSF CC IADEKVYVKNFSSINTTTWIPGIIQRHIGRTLYRVLVKDTVWIRHANQLRRRDNPIYIDVPLNLMDQIDV CC TPTPAPALTSSTAPPSPVPTPPTPMPRKSTRITRQPQRLVVQPSQKSYN. XX SQ Sequence 4189 BP; 1253 A; 1035 C; 872 G; 1029 T; 0 other; tggcgatcag gcaaaactag cggtcaggca aaggctatgg cagacctgac tcaacaactg 60 gcttccctca tcacagcttt tggacaattc gtacaaaatc cagcatcatc tcctacctct 120 gtgccatcaa atgtgtcgac tagaacgagt cagttggtgg aatctatttc gactcgaatt 180 ccgaatttct cgtacgatcc ggatgaagag aagacatttg atggatggtg gaatcgatat 240 gaagatatca tcaccaaaga tggctcttct ctcacagaag atgccaaagt caggttcgtt 300 ctatcaaaac tagattccaa agagtactac catttttcaa atcgagtact gccggcaact 360 cccaactccc tcaaattcac tgatctgatt tcaaagcttt ccgacacgtt caagtcgact 420 tcttcaatat ttcggaagcg tcaggaattt ttgagaatgg agtacgatgg atcatcgatt 480 gaagagtaca cagtcctggt actccgccgg ttcacatctt cagaattcaa gaagatgacc 540 gatgatcaaa catgttgcat ggtgtggata aatggattga gggatagcag ctacatcgat 600 attcgaacca aagcacttca aataatggaa tcgaagccta ctactacact tcttgagctg 660 gaaaaagaaa tcaagagact cctggacatc cgagaagatt ccaaaagtgt gtgcagagtt 720 caacagccag cagaggtcaa cgccatcaat cgaaaatcaa gcacggacaa atcacagaaa 780 tctcagaagc ctccaccgtc accatgcttc aaatgttctg gaaatcattg ggctagagaa 840 tgccagaaaa aggtcacatg tcttaattgt caaaagagcg gtcacatagc taaattttgc 900 agaaccaaag taaaaggcaa tgagtgtcca aaaggcaaaa ttaaatcggt cataattggt 960 tcagcaacca actcacaagt caaccgtatc tacaggacag tcattatcaa tggaaaaaag 1020 ctgaagatgc agatggatac aggtgctgat atcacgatga tcagtataaa agattggaag 1080 ctgttgggcc gtccagaact tcagtcacca acaattcaag tgaaatctgc aaaccatcaa 1140 ccgattgccg tcaaaggatt tttcaagtgt catttcaagc tgaatggtac atctgcatcg 1200 ggaatggctc atgtggcgga gaccggaact cttctgggaa ccgattggat ctccaaggat 1260 ccacattttt ggcgaatgct aaacgcaaac caagtcagca aagtttcttc cgatgttggc 1320 tcagcatgcg actacctgga caacatgcgc gaaggactta aagctgagtt gaataaacaa 1380 ttttcagatg tcttcaaacc agaacttggt cgttgtacga agacaaaagc atctctggta 1440 ctaaaaccga atgctcaacc agtattccgg aaagcccgtc cagttccatt tgccgccgtt 1500 tccactgttt ccgaagaaat tgaacgacta caaaaagctg gtgtcatttc accggtggac 1560 cactccgatt gggccgcacc aatcgtactt gtcaagaaga agaacggatc gctacggatg 1620 tgtgcagact tctcaacggg tctcaacgac gccatccaac ttcaccagca tcctcttcca 1680 actgccgacg atatcttcgc cacactaaac ggtgggaagt atttttcaca gattgatctc 1740 gccgaggctt attttcagct taagctcgac gagcaagcca agagcatgct gtgcatcaac 1800 acacacaagg gattgttccg ctataatcgg ctagcattcg gagtcaagtc ggctccagga 1860 tcgttccagc aagtgatgga ttctatgatc acgggtctcg atggcacggc agcatacctt 1920 gatgatatca tcatctcggg ttctaccatt gaagaacaca acaagaggct aatggcattg 1980 atgaagcgga tcaatgacta cggattccgg atcagactgg aaaagtgcac attcttgatg 2040 gaaaggatca catttttggg attcgtcatc gatgcaaatg gtagaagacc ggatccggag 2100 aagatagcag ccattgatca gatgccacca ccaacaaatg acagccaagt ccgatcattc 2160 ttaggattca ttcagttcta cggatctttg tctcggagtt gttcaagctt cgtccaccat 2220 tggatgccct tacaaagaag gatgtcaaat tccaatggac tcctcaatgt caattttcat 2280 tcgaccgcgt caagcagatt cttcgttccg atttgctgtt aacacattat gatccgaacc 2340 ttccgatcat cgtctctgcc gatgcctctc aatacggtat tggtgctgta atctctcata 2400 gatttccaga tggttccgag aaggcaatct accatatcag caaagctctc acagcaccac 2460 aacggaacta cagtcagatt gagaaagaag cttttggtct catcacggct gtcaccaagt 2520 tccacaaatt catctatggc cgtcacttca cactcaagac ggaccacaag ccattactat 2580 cgatttttgg agacaaaaaa ggtatacccc tttatagtgc taaccgtctc cagcgttggg 2640 cgatcatcct gctcaactac gacttctcga tcgaatacgt caacactcat gattttggcc 2700 aagcggatgc tctgtcaaga ctgatctccg aacaaatcca acagacggaa tgtgaggatc 2760 gtgtgattgc tcaagtggaa tcggaagtct tgacaaatct ggttacaaca tgtgatcaat 2820 tgcctgtgac tgctaaaatg attcgagcat cgtccaagaa ggatcctctg ctgaatcaag 2880 tataccagta cactatctca ggttcgtggc ccaaaatctc tgataaaact tcacaattat 2940 ctcttttcca caaccgacgt gatcaactct ccatcgtgtc cgaatgtttg atgttcaatg 3000 gtcgaatcgt gataccacat gctctgagat cccgagtcct caaaatgata catcgtgctc 3060 acccaggaat tgtgaggatg aaacaattgg caagatcact agtctattgg ccagccattg 3120 ataaggatat cgagaaaatg gtacgtagtt gtgatgaatg tgcttctgtt tctaaaaatc 3180 caacaaaaaa atactttgtg ctcctggccg attccaacag ctccatggca acgcgttcac 3240 tgcgactatg ccggaccagt taatggacgc tactacttgg taatcgtgga cgcattttcc 3300 aaatggccgg aagtcatccc aaccacatcc ataacatcca cagctactat caacatattg 3360 agacgaattt ttgcacaatt tggagatccg gagacactgg tgaccgacaa cggcacacaa 3420 ttcacgtcat ctcaatttca aagcttctgc aaagatcgag gaatcagtca cctgcgatca 3480 ccaccgttcc atcctcagtc aaatggacaa gcagaaagat ttgtggatac cctgaaaagg 3540 ggattaggca agttgaaggg ggaggaaaac acagatactg ccttatatgt gttcctccag 3600 aactaccgtt ccactccttg ctcatccagc ccagatggct ccacacctgc tgagaacttc 3660 attggtcgga agatccgcac ctttttggat caattgcttc ccaacgacca acttctcgtc 3720 tcgcatgaca cagagatgga gaagcagttc aacaaacagc atggtgcccg gcgacgcagt 3780 tttatagccg atgaaaaggt ttatgttaaa aacttcagta gcataaatac taccacttgg 3840 attccaggaa tcattcaaag acacattgga cgaacgttgt atcgagtgct cgtcaaggat 3900 actgtatgga tcagacacgc caatcaactc cgtcgacgcg acaacccaat ctacatagac 3960 gtgccactga acctgatgga tcaaattgat gtgacaccaa cacccgctcc agctctaacc 4020 agttccaccg ctccaccatc tccagtaccg actcccccca ctccgatgcc acggaagtct 4080 acccgcatca ccaggcaacc tcaacgactg gtcgtgcagc cgagtcagaa atcgtataat 4140 taatttctgt acctctattc atctttctct tccaacttaa aaagggagg 4189 // ID MARINER44_CB repbase; DNA; CBR; 2649 BP. XX AC . XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE Caenorhabditis briggsae family of DNA transposons - a consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; transposase; KW mariner/Tc1 superfamily; DNA; Cb000520; MARINER44_CB. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 105-2226 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-2649 RA Pavlicek A. and Jurka J.; RT "MARINER44_CB - a family of autonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(9), 240-240 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. Copies are 98% identical to the consensus. CC MARINER44_CB contains 151bp-long TIRs and is flanked by TA CC target duplications. The internal part encodes a 501aa-long CC protein similar to bacterial mariner-like transposases. One CC similar CC sequence is found in C. elegans, no similar elements is found in CC other CC eukaryotic genomes. Nonautonomous elements listed as CC MARINER44B_CB. CC MARINER44_CB_ORF: 659-2162 (501 aa) CC MFQTELRHMRIGQSLCDIDTSIFPKTPTQKHTRNSGEEIMRNVSSSVGIIQEKLGSDCRFTMFSNTAKAT CC AEMCGLSRKTVIRLTPERDLPQKKLLVTMGKKERCRRYASQLDFVKRVRIVAKIHSLWKEGRDVTVSDLW CC TFAKDELKFQRGRSVFLYVLRGLGFVYRQKEFNPIVSERPDIVHKRMLYLQLKKEWDSKNALYGSFDETW CC AHNGMVRRLAWMHANQGMYKKSKLMDLLSSQPGPSKGRERGKRVIIAAVITQLGVLKGSELLLVSGLREE CC DQKQDYHADMDGNNFEIYYRKMIPLFAAEAAKLGRPAVLLCDNAPYHNAPLRKPPTSTSSRADITSFLTE CC HGVKFFPKQTKEILYDLARIFIESNGGREAFTVYKFDEYAKSHGVTVLRLPQYHCFFNPVELLWAQLKQH CC LRKIGKPEDSVELVIFRYFFPEIVFHLGEKPCQGVPRVFSSNFGRQTVSSHSKIGDRPSRDDGRRRYDGL CC RRGVRLELRRR. XX SQ Sequence 2649 BP; 822 A; 546 C; 585 G; 696 T; 0 other; ttgtcggaat aaaaaaagtg ggactcggtg tttgcgtact ttgatttccg cttccccccg 60 ccgacgctcc gcccactgct tttgcaagtg cggcgttgtg ttttgcaatt gtgcggcgcc 120 acttcgggtt tattgtaatt aatgaggttt tcatttaaaa aaaacaattt atctcacaat 180 ttatagagaa aacattgaaa aaagcaacaa tgagctacaa ccggggcatt tcaaaggaaa 240 caatcttaaa aagaggtagt tatatctgga aaaatgtggg tagaaagggg gaaaaaatga 300 ttaggaagct atgttgaaag gaatacaaga ttttctgaag atgttgctca acgacagttg 360 tggactcgga gtgttggagc ccaagtaact ccaattagcc acgataagaa agtacaaaca 420 tttccgacca ctcgtgacat cagtcttcaa gctaaacctt cggacattcc tggcttcttt 480 catctgaaaa acacagcgac tgatcctacc tcaaccagca atgcaagcac ccagagtagt 540 acaattatcc gtaacaagac aacctcttct cagtgtgttt tacctcccgc caacagattc 600 aagtatctga ctgaggtata aagatcttat caacctagaa tagtaagcag tagggtgcat 660 gtttcagact gaattgaggc acatgagaat cggacaatcg ttatgtgaca tagacacttc 720 catctttcca aaaaccccca cacaaaaaca cactaggaac tctggagaag aaatcatgag 780 aaatgtgtca tcgtctgtcg gcataattca agaaaaattg ggcagtgact gtcgttttac 840 aatgttctcc aacactgcaa aggcaacagc tgaaatgtgt ggtctgagca gaaaaacagt 900 aatccgcctg actcccgaac gagacctacc gcaaaagaag cttcttgtta caatggggaa 960 aaaagaacgg tgcaggagat atgcttctca attggatttc gtcaaaagag ttcgaattgt 1020 agcaaaaatc cactctcttt ggaaagaagg tcgcgatgtt acagtatccg atctatggac 1080 atttgcgaag gatgagctca aatttcagag agggagatca gtgtttttgt atgtacttcg 1140 tggacttgga tttgtgtatc gccaaaagga attcaaccca atcgtgtcag agcgaccaga 1200 tattgtacac aaaagaatgc tgtatctcca gttgaagaaa gagtgggatt ccaaaaacgc 1260 tctatatgga tccttcgatg aaacgtgggc acacaacggc atggtgaggc gtcttgcctg 1320 gatgcatgca aatcagggga tgtacaaaaa gtcgaagttg atggatcttc tatcatccca 1380 gccaggtccg agtaagggaa gagagagagg aaagagggtc atcatcgctg ctgtcatcac 1440 acagctagga gttctcaaag gatccgagct tcttcttgtt tccggattga gagaagaaga 1500 tcagaagcaa gattatcatg ccgatatgga tggtaataac tttgagatct actaccgaaa 1560 gatgatcccg ctttttgcgg ctgaagctgc aaaacttgga agacccgcag tgttgttgtg 1620 tgataatgct ccgtatcaca atgctccact ccgcaagcct ccgacgagca cttcttcccg 1680 agctgacatc acatcttttc tcacggagca tggtgtaaag ttcttcccaa agcagacgaa 1740 ggagatcctc tacgatttgg ctcgaatctt cattgaatcc aacgggggtc gcgaggcatt 1800 cacggtctac aaattcgacg agtatgccaa gtctcatggg gttactgttt taagactccc 1860 acaatatcac tgttttttta atccagtgga attactgtgg gcgcaattga aacagcacct 1920 cagaaagatt ggcaaaccgg aagattcagt agaactagta atttttagat atttttttcc 1980 agaaattgtt ttccatttag gtgagaagcc gtgccaaggc gttcctcgag tcttttccag 2040 caacttcggc cgacaaactg tttcttcaca ctcaaaaatt ggagacagac cttcgagaga 2100 tgatggaaga agaagatatg acggattacg acgaggtgtt cgacttgaac tacgacgtcg 2160 atgaagctgg caatctctac aacatccgaa tcgatagtga tgacgaagac gcgatggtgg 2220 acgaggaaat cgaaaccatt tgcccaacag attgctccgt tagctctgat gacgacttca 2280 acgttttcag tgatactgaa gactatgact ttctagaata atgcaaatta gtattattgt 2340 tagccttttc cggttttttt tttcattttt ccagtgaatt ttatagtaat cgtttacctg 2400 taataaatta ttgagttttg agacaacaag aagtaaaaaa aatcattttc tctaaaaaat 2460 tgtgacataa attgcaattt ttctatgaaa atctcgttaa aacctcatta attacaataa 2520 acccgaagtg gcgccgcaca attgcaaaac acaacgccgc acttgcaaaa gcagtgggcg 2580 gagcgtcggc ggggggaagc ggaaatcaaa gtacgcaaac accgagtccc acttttttta 2640 ttccgacaa 2649 // ID MARINER52_CB repbase; DNA; CBR; 1085 BP. XX AC . XX DT 07-DEC-2004 (Rel. 9.11, Created) DT 07-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Caenorhabditis briggsae family of repetitive elements - a DE consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; 3bp TSD; KW Cb000028; DNA; MARINER52_CB; mariner/Tc1 superfamily. XX OS Caenorhabditis briggsae OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; OC Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 7-867 RA Stein D.L., Bao Z., Blasiar D., Blumenthal T., Brent R.M., RA Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A. et al.; RT "The Genome Sequence of Caenorhabditis briggsae: A Platform for RT Comparative Genomics."; RL PLoS Biol 1(2), 166-192 (2003). XX RN [2] RP 1-1085 RA Pavlicek A. and Jurka J.; RT "MARINER52_CB - a family of nonautonomous mariner/Tc1-like RT transposons."; RL Repbase Reports 4(11), 301-301 (2004). XX DR [2] (Consensus) XX CC The consensus sequence was reconstructed from the Ensembl CC genome annotation. MARINER52_CB contains ~175bp-long imperfect CC TIRs CC and is flanked by 3bp target duplications TNA. C|TNA|G insertion CC motif. XX SQ Sequence 1085 BP; 368 A; 196 C; 186 G; 335 T; 0 other; caagggaagg tttttcagac aacggttgag aatttgctca aaatttgtac aaaggtactt 60 tcgaacatgc tgaatccgaa tccaaaaaaa tttttagccc gttctcaaaa ggagccgaaa 120 tatggcctct gaaagtgctt ttagtactaa attttggcca aaaacatgca tttttcgagg 180 ttaaaaatta gtttttcagg atttgcttga gtgcgaaact catttttgga catttttcta 240 tcttctaaag taacttttaa acattttcaa aaaaaaattt ttttttgaaa aattttgaaa 300 aaaatcacca tggggtcccc cacactttga aaatgatttt ttgaaaattt tttgaaaagt 360 gcgaaaaaac gttccaatta ttcagaaacg ataaaaatag cattctgaca aattttttca 420 gcccaatgtt gtctttgggc tcaaaaaatc tccaaaatct gattgttgtt agaactttga 480 cagttcctaa tttctgaaat atcgcttgaa cttaactgaa acctatagaa ataggttcga 540 atcttgtatg tgatcgattt gacagtactc cacctcaaaa agagcaaaat tgagcaactt 600 tcagagactg aaattttcgt ttttaacgat acgaggatgt aagaaccggt cgaaaagacc 660 attatctatt ttttcctcaa actctcatga aatctttttt ttttttgaaa acttttgaaa 720 ttaatcaaaa agtgtcatat agtgcctagg ggggcaaact tggaatcaaa aattagtttc 780 aaaaaatgca aaaaaagttt taccacagtg ggggtcgaac cagcatagtc aatcctaatg 840 agtcaccctc ttaccacaac accacacaac cgatattttc ctctcacgcg gaattggtag 900 aggagggaag gggaagccga aatccccagc gcaccgaaat cggcccaaat tttcagacaa 960 agtttttcgg cctgggagtg agaacgggct aaaaattttt tcgtcatcgt atagagcatg 1020 tcttaaacta taagtatgca aattttgagc aaattctcaa ccgttgtcta aaaaaccttc 1080 ccttg 1085 //