ID Murbi_MT repbase; DNA; DCOT; 524 BP. XX AC . XX DT 30-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE A putative non-autonomous DNA transposon from Medicago DE truncatula. XX KW DNA transposon; Transposable Element; Nonautonomous; LTR; KW retroposon; repeat; Interspersed; Murbi_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-524 RA Shankar R., Jurka J.; RT "Murbi_MT: A harbinger type putative non-autonomous DNA RT transposon from Barrel Medic."; RL Repbase Reports 6(11), 582-582 (2006). XX DR [1] (Consensus) XX CC The sequence is very well conserved in the Medicago genome as CC well as exists in multiple copies. Flanked on both the termini by CC conserved 8-9 bp TSDs. XX SQ Sequence 524 BP; 147 A; 106 C; 130 G; 141 T; 0 other; gggttgggaa taggccaggc cggcctacag gggcctatgg cctggcctgt ttaagcctgg 60 cctggcctgg cctgtttatt aaaaaggcta ggcttaggct ttttaaaaag cctatttaag 120 taaataggcc aggcttaggc tatcaaaaaa gcctatgaag cctaataggc cggcctgttt 180 atgcatgtta ggcttcatag tggacttttt aaataggctt taaagcttta tagtgaaata 240 ggcttttaag gccttatagt agtgatagac aagtcttaca ctgaaatagg ctttgaggcc 300 tattaagcct atttaaaagt agataaaatg gaatgtttag tgactttaat agtaagtagg 360 cctgtaaata ggctttcagg ccaggccaga cttttaaata ggccaggcca ggccaaaaaa 420 ataggcctat gaaaggccat aggccaggct caggcctgca aattttttcg taggccaggc 480 tcaggcctat caaagcctgg cctggcctgg cctattccca accc 524 // ID GYVIT1_LTR repbase; DNA; DCOT; 1902 BP. XX AC AM448663; XX DT 25-APR-2007 (Rel. 12.04, Created) DT 25-APR-2007 (Rel. 12.04, Last updated, Version 1) XX DE Gypsy-type LTR retrotransposon - long terminal repeat (LTR). XX KW Gypsy; LTR Retrotransposon; Transposable Element; GYVIT1_LTR. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-1902 RA Jurka J.; RT "GYVIT1: Gypsy-type element from Vitis vinifera."; RL Repbase Reports 7(4), 141-141 (2007). XX DR EMBL/GenBank/DDBJ; AM448663; Positions 12875 10974. XX CC LTRs are 96% identical to each other and show no similarity to CC other Gypsy LTRs known to date. XX SQ Sequence 1902 BP; 554 A; 356 C; 383 G; 592 T; 17 other; tgattactac tcaaaaagtg ctatttgata gcctttaatt aatccttttt aacacttttg 60 agtagtagtt taggcctttt aactcaattg acatgttaag gatcctttaa agcaattttg 120 atcactttgt gtaagttttg gtgtttttgt tagtattttg atcaccaaag caagtcaaga 180 atgaggagag ctatgaggaa tcttgggcaa agttgagaat tcaattgcca agagtgaatc 240 cggattgcaa ggagaaaaag caaagaggat cagtcatgga gcatattctt gatgacagtc 300 gtagcagcca cttttggagc actttctgaa gtccaaatga tgcaagctat ataccatttc 360 aaagctcagg aagtcaacaa tccaatgctt caaacggtgc gcgatttgga gttgaaacga 420 agaagttgca gccattacaa gccagtcact ctgaagtgct gcggaatcaa ccttttgttg 480 cgagaatttc gcaacacttt tgtacagtaa ggtgtttctc cttctgacga tgcacgaacc 540 atgccgcgag agggaagcta gaaacttcaa gatggaagcc aactttgcag cctggtgaag 600 atagctcggt cttgcgaaat aatttcgcag ccctcttggg tgtctgcgaa atttcgcaga 660 caccactttt ctcctgcgaa atggctcctg aagcctcccg aagcttgcta ccgacattgg 720 gagatatttt ccattagatt tttgttgtct aaatcccaaa atactccttg taaaccacca 780 attacatgat tccttagttt ttaagttagt aaaaagacca aatatctttg taagaattag 840 ttttatatta gtttgatata aatacctctc gggagcctgt tctcagaaag gagttccttc 900 tgtaaccttt tggtaagcaa gtaaagtatt ttctttctac tgccttacct tctcactttg 960 tattttcatt ttatttctaa gttatgaatt ctctgaggag ttttccccag agaatgagta 1020 actaaacctc caattccttg gagctaaggt tgccggggaa ggttccaagt gcaaaaatgc 1080 aaaactctgt ggttttagct aataatgaag aggaagtgaa atcctttagt gatttcaatg 1140 gtttttttta gttaacttaa aaaacacttt ggagtcacct aggccaacac ttggtaaggc 1200 aagtgatttc caaccgtgga aatgcactag tttacccctt gcgagcctct ggtaggtgac 1260 ttcaaggtag gattttctgg aattaccaac acttrgtaag cttttggact cctaggagac 1320 atccattagt tatctcttgc gagtttgtga agggrartcc aaggttaaag atcaccttga 1380 atggtaagtg ctcgtgagag gcatgaacca ttgcaagttg tatcagtgag agaattaaag 1440 tgaaatctaa ttgaaggagt ctctgtacat caccggttag agrattgact ataagttgaa 1500 tctctaatgc gaggaaatga accatytgac cggagctatg tcttttgcat gaggaaccac 1560 cycagtgaac ctaaatctcc aaggaatgct tttcttccta aattattcca aacttctgtt 1620 aagattagtt agtttaagtc tmaaccttta ccaatcaaas tttgtgtttt ayttcttaar 1680 ctaaccgtga aatgaaacaa raccaattca cttggaattg gtatccttga ttgcttgywm 1740 atcattccya gtgaacgatc cttagagcca ctatactata gtagctttgt atttgctacc 1800 ctagtgtatg gtgttatagg tataaattty gttgatcact tcctcaatca aggagcwcca 1860 gctgaacaca aatcagctga gacaccaatt gggcatgagt ca 1902 // ID GYPMET_I repbase; DNA; DCOT; 7285 BP. XX AC AC161863; XX DT 09-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Internal region of GYPMET retroposon, from Medicago truncatula. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; KW Interspersed repeat; LTR retroposon; Medicago; GYPMET_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-7285 RA Shankar R., Jurka J.; RT "GYPMET: LTR retroposon from Medicago truncatula."; RL Repbase Reports 6(11), 559-559 (2006). XX DR EMBL/GenBank/DDBJ; AC161863; Positions 65555 72839. XX CC The internal region sequence resembles Copia type, while the LTR CC sequence shows closest resemblance to Gypsy. Contains conserved CC integrase domain. XX FH Key Location/Qualifiers FT CDS 2015..2992 FT /product="GYPMET_I_1p" FT /translation="MPSSVLDNEIPHSLLFPKDPLYSVPLRVFGSACFVHD FT LSPGRDKLSPRAVKCVFWGYSRVQKGYRCYCPSTHRFYVYADVTFFEDTPF FT FTTPSTSDSTSHSTSQVLPIPLFEPFVPTQRLPQSLTRPGFRRYGATYERR FT HVTIPESAPTDFDNIVQETTPTISDDSSSILILSPNVDPPDPIIDLPIALR FT KDNRSTSNPHPIYNFLSYHRLSPLHHAFVSAISTVSIPKTVKEALSHLGWR FT QAMIDEMNTLESSSTWKLVPIPHGKSKVGCRWVFAIKVGPDGHVDRLIARL FT VAKGYTQIYNSCKNGICSCFLINGFYEPLAFVST" XX SQ Sequence 7285 BP; 2061 A; 1401 C; 1455 G; 2368 T; 0 other; aaagcctacc gacactattg tatcacactt tttattatta actaaatttt gaaattaaat 60 gttgattatt ctctatttat tatggttgat ttagtttcct tattttgttt tcatgagatt 120 ctctcgtgta tattgttgga aattccgcct taattgcggt ccgcccctag tcgcctaaat 180 tgtgaccttt ggttagcctt aattgcagcc tccaacacct tcattgtgtt ggctttgagg 240 gggtggaatt agtcccacat tgggtagata ctactcttga taagagttta taaagaggag 300 gcactcctca ccttacaagc cggttttgta aggatgagtt aggccccaaa tttcaacata 360 tataacttgc atacatcatt gtgaattatt caagttattc attctaaatt attcagattg 420 gtaccagagc tctctggtca ggtaccttcc actgttttgg tttagggttt cagccggcga 480 cccagtgttt agattggtac cagagctctc tggtcaggta ccttccgctg ttttggttta 540 gggtttcagc cggcgaccca gtgttgtttt taaacacagt cagagtgact gccaccggtg 600 acacgcgcca taccattgtg accgggacac tccgatctgc cttcattaga agtttctccg 660 tcataaggtt ccgcatgcgc cgccacgcga cgcctccgta tacggcgcgt gtgtgtcacg 720 tgccgccctc tgaacgcctg tttgcggcgg cgcttgtttc agtagactcg ttttttgttc 780 ctgattctgt tgggacacct tccagctttt gggtctcacg tttgaggcgc gtttcagtga 840 ttttttgctt cagctgtgtc tgttcttgag gttcttttcc tcttgctgca actgttcaga 900 aggtcttttt cattcattgt gcatatctgc acatttatca gtattgttga actgaacggt 960 ttacggtttg ctttttccgt tgtttgtatt tgatggctgc ccaaaaggtt tcaacttcgg 1020 ttacattggc tcatttcagt aattctacaa tctgcttatc tcattctatg ggatcacgga 1080 ttttagattc gggtgcttct gatcatgtag ttggtaatcc gtcacttatt tatgatttgt 1140 cacctcctaa aatatctcac aacattactc ttgctaatgg ttctaaggca caagttactg 1200 gtattaagct tcacccctgc catctctacc cttgcattat gtgttatttg tacctggctg 1260 ccctttcaat ttgatttcaa tcagtaggct tactcgttct ctcaattgtt ttataacatt 1320 tacatctctc tttataaaag accaaagtac aggaaatcaa attggagcag gctctgaatg 1380 acaaggtctc tgttaccttg aatcaccttc accaactgta tgcaatgttt atgcatctcc 1440 agatatcatt catcatcgtt tgggtcatcc aagtctagat aagttaaaag tgttggttcc 1500 ataactctca catttaaagt ctcttgattg tgagtcgtgt caacttggca aacatgttcg 1560 gacatctttt catagcagtg tcaataaaag atctaagcat gccttcgata ttgtgcattt 1620 tgatatttgg ggtcctagtc gcatgccttc taatttagga tacaggtatt atgttacttt 1680 catcgatgat ttctcgcgat gtacttggat aaccttattg aaggatagtt cagaatagtc 1740 tagtgcattt aagacttttt gtttagagat aaagactcag ttggggaaaa caatcaaagt 1800 tttgagaagt gacaatgcca aagaatactt ttctacacaa tttaactcct ttttgatttc 1860 tcatggtatc acacatcagt ctagttgtcc acacacaccg caacaaaatg gtgtcgctga 1920 gcggaaacat cttcatctag tagatgcagc tcgaacctta ttgatcaatg ctcatgcacc 1980 tttaaaattt tggggtgacg cggttctcaa ctgcatgcca tcatcggtct tggataatga 2040 gattcctcat tctctcttgt ttcctaagga ccccttgtat tctgtcccac ttcgagtttt 2100 tggctctgct tgttttgttc atgatctttc tcctggtcgt gataaattgt ctccacgggc 2160 tgtcaagtgt gtgttttggg ggtactccag agttcaaaaa gggtaccggt gttattgtcc 2220 atctacacat cgtttttatg tttatgcaga tgttactttc tttgaggata cacctttctt 2280 taccacacca agtacatcag attctacttc tcattctact tctcaggtgc taccaattcc 2340 tctatttgaa ccatttgttc ctactcagag acttccacag tcactgactc gtcctgggtt 2400 tcgtcgctat ggtgctactt atgaacgtcg gcatgtcaca attccagaaa gtgctcctac 2460 agattttgac aatattgtcc aagagactac ccctactatt tctgatgatt caagttctat 2520 tctaatcctt tcacccaatg ttgatccacc tgatcctata attgacttac ctattgctct 2580 tcgtaaagat aatcggtcta cttctaatcc tcatcctatt tataattttt tgagttatca 2640 tcgtctgtct ccattgcatc atgcttttgt gtctgctata tctactgtct ctattcctaa 2700 gaccgtcaag gaagcattat ctcatctagg atggaggcaa gcaatgattg atgaaatgaa 2760 tacattggag tctagtagta catggaagct tgttccaatt ccacatggga aatctaaagt 2820 tggttgtcga tgggtctttg ctattaaagt aggccctgat ggacatgtgg atcgtttgat 2880 agcccgatta gtagcaaaag gatacactca aatttataac agttgcaaaa atggcatttg 2940 ttcgtgtttt cttatcaatg gcttctatga accattggcc tttgtatcaa cttgatatta 3000 aaaagctttc ttgcatggtg acttggaaga ggagatttat atggagcaac cgcctggctt 3060 tattgctcag gggagtacga tcttgttttc aagttacaaa aatcattgta tggtctaaaa 3120 caatcacctc gagcttggtt tggaaaattc agcaaggtta ttcaatagtt tggcatgatt 3180 cgtagtgaaa cagatcattc tgtattcttt aaacgttcat ctttgaaccc agtcatttat 3240 cttgtagtat atgtagatga cattgttatc actggcaatg atcaagaagg cattaaagac 3300 ctaaagcaac gtttattcag ccactttcaa acaaaagatt taggtcgatt gtgttatttt 3360 cttgggattg aagtagcttg gtcccaagta ggcattgtta tttctcagag aaaatacgtt 3420 ttcgatatct tggaagaaac atggatgctt aattgtaaac cagatgatac tcatgtggac 3480 cccaatgtga agcttttacg gaaccaagga gatttgtatc ctaacccaag aagatacagg 3540 aggtaagttg ggaggctaaa ttatctcaat atgactagag catatatttc gtttgttttt 3600 agtgttgagt caatttttta tctcaccttg tgatagccat tggaatgctg tggttcggat 3660 cttgcggtat attaaagggt cgcctgaaaa aggacttgtt tattcagaca gaggccatac 3720 caatattgtt ggatattcag atgcaaattg ggcaggtgat gtgaatgata gaagatccac 3780 ttcgttattg tgttctaatg ggaggaaact taatttcatg gaaaagtaaa aagcaaactg 3840 ttgttgcaag gtcaagtaca gaggcggagt atcgtgctat ggcacttgct acttgtgaac 3900 tttaagtgtg ataatcagtc ggagttgtat cttacgtcaa atccaatttt tcatgagagg 3960 acaaaacaca gaagttgatt gtcgatttat cagagagaag ataatttccg gcatcattaa 4020 aacctcttca gtgagctcca atgattagct agccgatatc tttaccaaac ctctacgggg 4080 acctcagatt gattacatat gtaacaagct ggatgtatat gctccagctt gagggggagt 4140 gttgattatt ctctatttat tatggttgat ttagtttcct tattttgttt tcatgagaga 4200 ttctctcttg tatataagct tgcatacatc attgtgaatt attcaagtta ttcattctaa 4260 attattcaaa ttaaagagtc ccacatcgaa cgagagatgg cctcacaaag tgtttatagg 4320 tgggggcaat cctcacctca caagccggtt ttgtggagtt gtgttaggcc caaccacgat 4380 ttcaaagatg gtatcagagc ctcttcatca agatccattg ggccacctgc tgtcaggttt 4440 ccgctatcgg gccacccatc attcatttcc acgctctaga tgttcagtcc tgggcgtgag 4500 aaggtgtttt aaagagtctc acatcggaca ggaaatggcc tgacaaagtg tttataagtg 4560 gggacaatcc tcacatcaca agccggtttt gtggggttgt gttaggccca accacgattt 4620 ctaagattaa acaatcacac gaatacttaa tataaagaaa caagaccagg tcaataaata 4680 tatcataaat ggtacctgaa tagatagtca agaacaaata tttccacaat cctgcaaccc 4740 aactctgtga caatgctttc ataatcctct tcagtaggtg tgtttacctt cataggttta 4800 taccctatac caacaacgat attaattagg gatggaacat caccaaccaa cccaaaccta 4860 tttttctcaa ttctgacaaa cttagccgta gtattgtcag catttattga ttgataacca 4920 ttgtataata tctccattag caaaggagat gtcacagcac catctacaaa gaagtgcttc 4980 accaaggctt ccataattac atcttgtttt tcccaaaaca tttggtcctt tgaaatttgg 5040 ccactttctt ctatgaaagt acagaatctg caaatattga aaaatcatat tagttaatta 5100 gcaaacaaaa aatttgaggg agtgtgacga ccgttttttt tttgttgaat aacaaaacat 5160 gggtttcaaa atttcatttc tcataaatta agagtataac atttaaattc acaacattta 5220 tacaacatag actcctacaa aagcatcaaa tacaaactta gactcctgca acgtttgtac 5280 aacatttgta ctgttgaaac tgatttactt agctatatca gtcataggat ttgttcctat 5340 catgtagtaa attattccta tttgttaggg agtgctaatg gaattgactt agtgtttcca 5400 caattcacat ttaagttagt gtagtcattt tatttagttg ttttcatctc ttcgtaaggc 5460 tatattaaag ccacctcttt tgcacttgaa taataaggct atattaaagc cgcctctttt 5520 gcacttgaag aatagtgata aattcccttc tgttttactc tgacatgtac atcatgatat 5580 gcacataaaa aataaaaaaa cacttagatt ttcttatatc taatatttag cttgccaaca 5640 tatattctta aaacttacaa gttgaaatcc attaggaaaa tcataactta atcacacaat 5700 tcgtcatttt ctaggtccca tgactacata cttataaact tcatctgaat aacactgcac 5760 aagttcacta ggatcaataa aattagtaag agctcaagga taaccatcta atagtaagat 5820 cacgcacaat ttgatatgcc ctgggaagaa ccattgacac atgtgtataa gagaaggggt 5880 aaaatgggaa gcaaagaaga aaaaggggaa catgtaaaac cgttagtgaa tgggagcaaa 5940 aggaatgatg agctgttgat ttgagtaact aaatgggcac tcacagaatt tacaattcac 6000 ctttcttgtt cctccttcaa tagaaacaac atattgccat gttgaagccg ttacaaaagg 6060 ttgtgtgaaa aacagagtta aggaaggaaa attcgaaaaa agagttatgg gttatggagg 6120 agaaaacaaa aacgggttta ggtgagggaa gagagtgaac gacggcgaga actttgccgg 6180 aaaagggaac acggccgtcg ttcgtgaaac agtggcatgg ccgtcgttct tggttaaggt 6240 tgtttcaaaa caccgtggag ggagaaaggc aacgacaccg gccgtttcga agctgagaat 6300 ggatgaatga agaaagggaa cacggtggcc gtttttggtt agggtttttt tcgtgaaggt 6360 gggatgggaa gagaaagaat gaaaaaacca ggtcataact atatataggg aaccaggttt 6420 ttaatttgga cccaacccgg ttcgtaaagc ccaatttcaa ttttgccagc cgaactcatt 6480 tttcattacg ttccttcctg tacaggaact cgatcctaac cacaaaacac acaaaattga 6540 cccagaacaa gtacggagca cgccggtgag gctgtggcat gtaggatcgt ccgatcctac 6600 gacccggcac tcatttttta ctaccttgtt tgtgtcaatt atttggtatt cagagatcaa 6660 cctggggaga gaatgctgat ctgtttggtt tatacacaca tgaggtgaaa agggaaggag 6720 cagggttgga ggtgttaaga gagtatgttg atctgtttcg agaggtatca gaattgcctg 6780 agtatgttaa tctgtttcga gaggtatcag aattgcctcc acgcaacccg tatgatcatg 6840 ctattgaaat caaggaggcg actcgaattc ccaacatccg accctacaga taccggcaca 6900 gtcagaagga agcaattgat gcttttgcta cagacatgtt aatatcagga ctcgtcaggc 6960 ccacggtaag tcgatatgct agccctttaa ttcatgttaa gaaaagacat ggtagttggt 7020 ggttttgtac tgattatagg gctcttaata agattactac aaataaattt ccaattctgg 7080 tgattgatga gttgtgggga gcggtaaaat ttttaagatt ggatttgaaa ttagggtatc 7140 atcagattca aacgaaagag ggtgatattc acaagactga attttgaact catgaaggac 7200 attctgaata tctcgtaatg caccgcccac gtttcaagct ttgatgaatg atatttttaa 7260 gcctttccaa agaatatttt ttttg 7285 // ID TOPIE1_LE_LTR repbase; DNA; DCOT; 1065 BP. XX AC AF220603; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Lycopersicon esculentum retrotransposon TOPIE1_LE_LTR, long DE terminal repeat. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW retrotransposon; TOPIE1_LE_LTR. XX OS Solanum lycopersicum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-1065 RA Lavelle T.D., Oldroyd E.G., Dalhbeck D., Staskawicz J.B., RA Michelmore W.R.; RT "Direct submission."; RL Direct Submission to Genbank (04-JAN-2000). XX DR Genbank; AF220603; Positions 53616 54680. XX SQ Sequence 1065 BP; 322 A; 228 C; 132 G; 383 T; 0 other; tgatattcta cacgacctaa taatttactg attttaactt tccacctaag tgtgaaacag 60 gttgactaat gtgttccagc aaagcagtta agatagtaag taaaagcaca ttatttttac 120 gtggaaagac ctagctcaaa aggtgtaaaa accacgacct gtacccttac aagatttaac 180 tccaacttca ctaaatcaat tacgagcctc cacaaaagat agattacaaa ctttgcaacc 240 taccttaact tcaagttatg aatttgaatt acaactcttg taatcctagg aactaactct 300 aattctaacc ttcaacacaa acctcccaag gtatgtgttc ctaacacttc gaattatcac 360 aaccctaaga caatactcct agttcagttt ataactcact gaactaagat tacatcaaga 420 ctcattcaca aagaaaaact cctaacacat aaactctgta aaggattaga ttcttcgatg 480 tgttccttca gttcgctggt agcacttacg aagtgaattt ctcaatcgct tttttactca 540 gtaagtgcac aagtattctg aacgacttcg cttctattta agcacattta tcatagagtt 600 attgttcact tcaaactcct tattgacttg tactctcttg acttagagtt ttacttcaag 660 taagactcct tctttaattt aaacttctaa cttttttaga cttcttcttc aaattacatt 720 cgttgattct tttgtattgt agtcgaactc taacacttca attcagcagt aacttgaaga 780 gttctatttt aagtgagact ttttcttcaa ttaaaattgt ttgtctcttt agtctccttc 840 ttcaaatcaa actcatcaat tctttctctt caattcatca gatgtttatt tccgtggggt 900 ttctgacgaa gttaacatta tccattcttt tatttctgca cttttgtctt tattcatttt 960 agaagctttc tcgaattcaa cagctcgtga cagtgcacct ttgtaccatg ttgactgacg 1020 tgtttcttct ttctttgtca atcatcaaaa ctgcataaat tccaa 1065 // ID SHALINE4_MT repbase; DNA; DCOT; 2282 BP. XX AC . XX DT 21-DEC-2006 (Rel. 11.12, Created) DT 09-JAN-2007 (Rel. 11.12, Last updated, Version 1) XX DE A putative non-autonomous LINE from Medicago truncatula. XX KW L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; KW LINE; repeat; Interspersed; Poly-A tail; SHALINE4_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-2282 RA Shankar R., Jurka J.; RT "SHALINE4_MT: A LTR element from barrel medic."; RL Direct Submission to Repbase Update (21-DEC-2006). XX DR [1] (Consensus) XX CC The LINE contains intact 3' end while truncated 5' end. A ORF is CC present coding for non-LTR reverse transcriptase. XX FH Key Location/Qualifiers FT CDS 310..1179 FT /product="SHALINE4_MT_1p" FT /translation="MAYTCLWPCVSDTISSAVAQSVPSATTQTVSGTTKSF FT LAALAGQNVIDDRPLPTPCIKGDALSIKICQDEYHKGXEDCKNALRGRLTL FT NKGDKPYSARDLSTKIGKLWKTTAAWKMVPLGKGYYDFHFDSADDLRKIWA FT AGTVNLKPGLLRFSQWTKDFKYHSQKQTHASLWIRLVELPQEYWRERTLKE FT IASAVGTPIDIDGPTRNRTFGHYARILVDIDLSKRAYDEILVEREGFAFKV FT EVQYERRPLFCHHCYSIGHNVTTCRWLHPQPPKDKNDRGKQIGCRGSSP" XX SQ Sequence 2282 BP; 595 A; 439 C; 510 G; 727 T; 11 other; shanmtgaag tttttcagtt gagaatttct acgctctgtt gctagggttt cccctaacat 60 gagtgccgtt tccacaaatc cttgctagtt tttcaattct acacgacata catagaaatc 120 cttcttatag acacgatgag cttgtacaat tgtcaaattt gaagctttac gtgattggtc 180 cctaaaggta caatgtcctt gcttgctaat tcatttttgt taatcaccca ccgtttgact 240 ttttgaatta gcccacctat tttgtaattg aatttgtcca attgctgaat caatcggtgg 300 atacatgtga tggcatacac gtgcctttgg ccgtgtgtgt ccgacaccat atcttcagca 360 gttgcgcaat cagtgccttc agcaactacg caaacagttt caggaacaac taagtcattt 420 ttagcagctt tagcgggtca gaatgtgatt gatgatagac ctctccctac tccatgcatt 480 aaaggggatg ctttgagcat caaaatttgt caggacgaat atcataaagg aktggaagat 540 tgcaagaatg cgttaagggg tcgattgact cttaacaaag gggacaaacc ttattctgca 600 cgtgatttaa gtactaaaat aggaaagctt tggaagacaa cggcagcatg gaaaatggtg 660 cctcttggca agggttatta tgactttcac tttgactcgg cggatgattt acgtaaaatt 720 tgggcagcag gcacagtaaa cctcaagccg ggtttgttac gattttctca atggaccaaa 780 gacttyaaat atcattctca gaaacagact catgcatcac tttggattcg tttggttgag 840 ttaccgcaag agtattggcg ggagagaact ttgaaggaaa ttgcaagtgc ggttggcact 900 cctattgata ttgatggacc gacaagaaat cgtacttttg gacattatgc aagaatttta 960 gtggacattg atttatcaaa gagagcatat gatgaaattc ttgttgaaag ggaaggtttt 1020 gctttcaagg tggaagtcca atatgagcgg agaccgttat tttgccatca ttgttactcc 1080 attggacata atgtcactac ttgtcgttgg ttacatccgc aaccaccaaa ggacaagaat 1140 gatcgtggga aacaaatcgg ttgccgaggc agctccccct aaaccatcta cagaacaatg 1200 atgtgggtgc ttccccttcg ttgttgctac cacaactcta cataggctat ttcgtcaaac 1260 tctttcagtt ttccactwca taatgttttt gacaaaattt ctcctgaaga gttgccacgt 1320 ctaygccagt gttagaggtt gtttcccctg ttgcgcacga tgacgtgcat tctgagggag 1380 tggagcagtt gcatcagaca tcgcgggagg tgttggagaa ccccacggtg gatgatgtta 1440 ctgttacgct ttctgatgat gtggaacaca atcattcgag cccrcgggag ctggtggaga 1500 gtcccaaggg ttcccatgag mgtgtaacac attcatcccc tgttgagcat tttgaggtgc 1560 atgaggtgtc tgtagaattt cagttcagac gaatacagtt gttgagcatg ttgacgtgca 1620 ttctggttca tgcggttctt tggtttcacc tgtggttatt gagcaacctc ttgttgataa 1680 tgttagcatg cccacgacaa aggaacaaga ggttgttakt ttacaacaac aagaggttca 1740 tcctagcaag aatattcagc atggtttaga tttgtgggaa agagttcgtg aatatgatga 1800 aagatcagct gaagaagact tcacgccggt tcttacaagg aagcagaaac agaaacttaa 1860 agtacaacaa gtcttggcaa agcagccttc taaaacccgt gctcggggtg atactcatcc 1920 gactgctcaa tgaattttct ctattggaat gttagaggcc tgttgattac tgtttggctt 1980 gcatctcttc ctgatgagtt gaatattgat ttctttagga tagatgtggt ttacctaatt 2040 acagatttcc ttaatctgtt ttttggttgt tttttttctg tttatttttc ttttctgttt 2100 tcttttgagg gttttggcct agtcccccct cctttgtaat tatttttccc cctttttttt 2160 aataaatttt tagagtttgg cggcatagga tggaggtttc tcggggtgcc aacctagttg 2220 ggatgtcgat gttgcctctt gatgtctgtc ctctctcctt gcttataaaa aaaaaaaata 2280 tt 2282 // ID PSAT19 repbase; DNA; DCOT; 659 BP. XX AC AF155749; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Pisum sativum dispersed repetitive DNA, PSAT19. XX KW Repetitive sequence; dispersed; PSAT19. XX OS Pisum sativum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Fabeae; Pisum. XX RN [1] RP 1-659 RA Neumann P., Nouzova M., Macas J.; RT "Molecular and cytogenetic analysis of repetitive DNA in pea RT (pisum sativum L.)."; RL Genome 44(4), 716-728 (2001). XX DR Genbank; AF155749; Positions 1 659. XX SQ Sequence 659 BP; 197 A; 116 C; 166 G; 180 T; 0 other; tcgaagcaga agaagatgat gttgaaggga ttcctaataa gattacccga cttcttgagc 60 acgaagagaa gatcattcag ccgcaccttg agaatctgga aacagtcaac ttggggtctg 120 aagattgtgt tcggatagtg aagattgggg cactccttga agagtctgtt aagaaggggt 180 tgatcagttt gctacgagaa tattccgata tctttgcttg gtcgtatgaa gacatgccgg 240 gtctagatac agatattgtg caacatttcc tgcctttgaa gcctgagtgc gtgcctgtga 300 agcagaagct cagaagaact catccagata tggcagtgaa gatcaaagag gaggttcaga 360 agcaaattga tgcggggttt ctggtgactt ccacatatcc tcaatgggtg gccaatattg 420 tgcctgtgcc taagaaagac ggaaaagtcc gtatgtgtgt tgattataga gatttgaata 480 aagctagtcc gaaagatgat tttcctctac cacacactga tatgttggta gataatacag 540 ctaaattcaa agttttctcg tttatggacg gattttccgg atataatcaa attaagatgg 600 cacccgagga tatggagaag acaacattca tcacaccttg gggaacattc tgttatcga 659 // ID Ogre-LE1_I repbase; DNA; DCOT; 12262 BP. XX AC AC171735; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 13-APR-2007 (Rel. 12.03, Last updated, Version 2) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-LE1; Ogre-LE1_I. XX OS Solanum lycopersicum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-12262 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC171735; Positions 64613 76874. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 5739..5901: putative intron. CC Note: ORF2+3 (gag-pol) disrupted by mutations generating several CC stop codons and the frameshift. XX FH Key Location/Qualifiers FT CDS 782..2086 FT /product="Ogre-LE1_ORF1" FT /translation="MTHPHFPNTQMVVKVNPILKTWWKDIQKNRELEANEL FT LGGLTALISVESDRHLIKALLKFWDTERLVFKFRDFELTPTIKEVGGFMGL FT AYKELEIIVPHKPSPRSFLKQMGMCHNPNLLCLKEGWISLEFLYSRFGDEE FT GHQNFHREFACSSAKWERYRLNAFAVVLLGSLVFPREGGKIHTGLCYVVRM FT LARGGKTLVPMILAEILRALTACTKGKRYFEGCNFLLQLWAVEHFYQRANK FT VDIVRWTMGNKIINHPLRMKHFISPVGTEDWFTYLKERSAVEIQWKYYWLK FT PRRAIIRGNELYFIELIGLNGVQPYAPLRVLRQFGQIQMIPLRSHMSHYGY FT DFGSELPQVNTILRRWKNVITIDVQEHRPFCTPEYYVWLLEDAEHRDLSEG FT GLPGFGDEKERRWARNLLNTDYDITLEMKKQIVPNIGEQHD" FT CDS join(2500..3882,3886..5538,5807..7351,7355..7789, FT 7825..9366) FT /product="Ogre-LE1_ORF2+3" FT /note="gag-pol." FT /translation="MVDDNSTTERVEACEGGQLHSNLILRLERKISQLEEE FT VANMRDLAKLSISLGTQFGENIDNPPNQTATPDNPPIHISPPEPIRPNAFP FT PPHAQNTQFPFHHYYQHTKPTVPETTPNTNIPHTFENNNPNPIYVETAPLT FT HDLHESESHQKDILIKTLTERLDNLTNRVQHVEGNKKLGGLGYEDLCMHPD FT VELPEGYKLPKFETFNGIGDPKAHLRMYCDKLVGVGRDERILMKLFMRSLT FT GEALSWYIEQDSRKWIKWVDMATDFMNRFGFNIENAPDWFYIQNLKKKPSE FT SFREYAIRWRSEAARARPPMEESQMKDYFIRAQELQYYDRMMLVAEKSFAE FT IIKLGERIEEGIKNGTIINLEALQATNKALQSGGMTESRKKTGSVMMAHGT FT RTPLRHKTTNPPPSPYPHTPYLHTPYPQHPSAPPPISPQPMPIYYQNAPPQ FT YLHASYPVYNVQPTHFTPPPTQTPNYRNRPSYERRPTKTYTPLAEPIAQLY FT ERLKQAGYVSPIPALPVDVRAKWYDPNKVCAYHSGMKGHTTEVCRALKDKV FT QMLIDTKTIQLKDPTPNVANNPLPNHQVNMVEAGDVWDWEESIWAVETEEA FT MPTTAQAPLIVQGLAPFEVEVAAPRPPFAVYKASSPTQCDTHAVPWDYNKR FT ETNVEETDVATGVTRSERIYTSENLVQGSSSKSKAPIVELEDQSIWKKVKA FT KEYSVIEQLSKTPSQISILELLQSSETHRDALLKILGEAYVPSNITHGEVS FT QMVGQVFEAYKISFHKDELPIEGTTHNKALYISVQYQDKVINKALVDAGSG FT LNICPLSTLTRLGVDSAKIQTWKMNVRAFDGSQRGTIGEITLDMLIGPVTF FT PIAFQILDIPSSYNLLLGRPWIHMAGAVPSTLHQCLKFEWDYEEVVVHGEK FT GHPVYTIEGRENMDGEMYHTVELVGNIELQPWFSQKIIDMMAWFGFELGKG FT LGAKLQGIVEPIQPVRHSTTFGLGYKYTTEEWLDWRPPRDGYYYPLKKPIP FT PLYQSFFPSMYCFQMRTYEIFKSLSIKFFSPFFCLVFNFYYFFFLTSKIHY FT KNVESEIVAYNETAQLNLNDLEEVEDNEVPEELIKRVEEFEEKPNPNLVET FT EVVNLGNAEVIQETRVSIHMTKEDKKEYTEFLIENKDIFAWSYADMTGLST FT AIVAHRLPTDPACPPVKQKLRKYKPEMSLKIKEEVSKQLDVGILQVTEYPT FT WLANVVPVPKKDGKVRVCVDYRDLNKASPKDNFPLPNIHILIDNCAKHETQ FT SFVDCFAGYHQIEMHKDDAEKTAFITPWGVYNYKVMPFGLKNAGATYMRAM FT TTLFHDMIHKEIEVYVDDVIIKSKESLNHLEDLRKFFARLRKYNLKLNPAK FT CVFGVPAGKLLGFIVSRRGIELDPSKIKAIRDLPPPKSKKEVMSFLGRLNY FT ISRFIAQSTVICEPIFKLLKKDAAVKWTSECQQAFDKIKDYLSNPPVLVPP FT ESGRPLLLYILVLDNAFSCILGQHDETGRKEQAIYYMSKKFTSCEARYSLL FT ERTCCALTWVAKLRHYLSSHTTYLISRMDPLKYIFQKPMPTGKLAKWQILL FT SEFDIVYVTQKAVKTQALADHMAENPVDDDYRPLKTYFPDEEVAFVGEDIS FT EEYDGWRMFFDGAKNLNGCGIGAVLISPTGQHYPVSAKLRFLCSKIWPNTK FT PAYEMIIIGDSDLLIHQVRGDWATKNRKLLPYLECVRRLCKRFVKTEFRHV FT PRVQNEFADALATLSSMIRHPDHNYIDPIHIHIHEQPAYCFHVEEEPDGKP FT WYDDIRRYLKSGEYTEDATSVQKRTIRRLATQFFLSGEILYRRTPDLGLLK FT CVEAREARRLVEEIHAGTCGPHMNGFTLAKKILRSGYYWLTMETDCIRYAQ FT KCHQCQTHADMIRVPPNELHVTSSPWPFAAWGMDVIGPIEPTASNGHRFIL FT VAIDYFTKWVEATSHKSVTKKVVDDFVKNNIICRFGIPESIITDNGTNLNS FT DLMRSMCEKFKISHRNSTAYRPQMNGAVEAANKNIKRILRKMIDNHKHWQE FT KLPFALLGYRTTIRTSTGATPYFLVYGTEAVIPAEVEIPSLRIIQEAKLSD FT ADWIRGRAENLALIDGRRINAICHGQLYQNRMARAFNKKVKPRHFSPGQLV FT LKRIFPNQDEAKGKFSPNWQGPYIVSRVLTGGALILAEMDGEVWPKPINSD FT SVKKYYV" XX SQ Sequence 12262 BP; 3670 A; 2686 C; 2464 G; 3442 T; 0 other; gaatggcgac tctgctgggg atgttaggtt cttaccatta cgtgttaact gcttatttat 60 gtggggttta ttttatttat taggtgctta ccatgttttg ttgccctatt tattatctca 120 tcttcatgtt cctccctttc ccttttcctt aattgtttat tatcatgttt cacctcttcc 180 ctctcccctt atttgtttac atgtttaatc tcgtatcctc ttgttttatt tgcgtagttt 240 tcatgtctac tttcctttat ttatgcttat ttatttattg tttataaact gtctatatgt 300 taccgttttc caatttaaat gctaaatgtt tactgcttta ataaattggc atcccgctca 360 tacttccccc caattgggac cctcttcctt ttttattttg ttctcgtgat gttgtgcctt 420 tgcacctctc acaactactc caatcttata caaataccca ttatagagag tcggcatatg 480 cgtggacgta gtggatagtt ttactaccgc gaagccacga gcctctcgca tagaatccct 540 ttcaagtccg tgtcaagcca actcttagaa gtcctggtta agtcatacat gctgcataag 600 acctaggagg tttgaccctt ggtgtcaatc catgtaatta gtagccacct tctcgtctga 660 agggccccaa aacccttaga caaattgcat atttatgtgt caacgtgatc ataataatta 720 aatcaagcca acattgccaa aatggagttt agaagttgtt tgttactttg tttgcagagt 780 catgactcac cctcactttc caaacacgca aatggtggtc aaagttaatc ccattttgaa 840 gacttggtgg aaagatatac aaaaaaatcg agagttagaa gcaaatgaat tgttaggcgg 900 cctcactgct ttgatctccg tagagtcaga tcgtcactta atcaaggcat tgttgaaatt 960 ctgggacact gagaggttag tcttcaagtt cagggatttc gagctaactc caacaataaa 1020 agaagttgga ggattcatgg gtctcgcata caaagagttg gaaataattg ttccacacaa 1080 gccaagtcca agatcttttt tgaagcaaat gggcatgtgt cataatccaa atctactttg 1140 tctgaaagaa ggttggattt ctttagagtt cttatattca cgctttgggg atgaggaagg 1200 tcatcaaaac tttcatagag aatttgcttg ctcttctgca aaatgggaaa ggtatcgtct 1260 taatgcattc gctgtcgtcc tattaggctc attggttttt cctagagaag gaggaaagat 1320 acacaccggc ttatgttatg tggttcgtat gttggctcga ggtgggaaaa ccttggtccc 1380 tatgatactc gcagaaattc taagagcttt gactgcatgc accaaaggca aaagatactt 1440 tgaagggtgt aactttctgc tgcaactttg ggccgtcgaa catttctacc aaagagctaa 1500 taaagtagac atcgtcagat ggactatggg gaacaaaatt atcaaccatc ccctaaggat 1560 gaaacatttt atctcccctg tgggaacaga ggactggttc acatacctaa aggagcggtc 1620 agccgttgaa atccaatgga agtattattg gttgaagcca cgacgtgcca tcataagagg 1680 aaatgaactt tacttcattg agcttatcgg tttgaacggt gtgcaaccct acgcaccact 1740 tcgagtcctt cgacaattcg gacagatcca aatgatacct ctacgatccc acatgagcca 1800 ctatggatat gactttgggt cagaattacc gcaagtgaac accatactac gaagatggaa 1860 gaatgtgata actatcgatg ttcaagagca ccgacccttc tgcacacctg aatattatgt 1920 atggctttta gaagatgcag agcatagaga tttaagcgaa ggaggtcttc ctggttttgg 1980 cgatgaaaaa gagagaagat gggctcgcaa cctcctcaac actgattatg acattaccct 2040 agaaatgaag aagcagattg tgcctaacat tggagagcaa catgattaaa gcttttaatt 2100 attatttatt tctctttact ccccatatgt tatccctagc cctttagtta tctttagatt 2160 gatgtaataa acagaaatta tttcaataat cgaaagttgt tctattatct aactctaaac 2220 tccaaattgg caaataaggc ttgaattaat tattatgcat cacttatgtg tcgcttaggc 2280 ctacctctgg ctcaacgagg ttccttgcat ttagggcgtt tatttcaaaa caacgtgttg 2340 atattgtgat attatcttaa cccctaactc ttttcttttg attctattgt tttcacattt 2400 cctaaggttg atctgtcctt catcctggca catacacgat caaaagggac ccccccttct 2460 ccttcttctc aaagagcaag ctcaaacgac aaaggaaaaa tggttgacga caacagcacc 2520 actgaaaggg tagaagcttg tgagggagga caacttcata gtaatcttat cctaagactc 2580 gagcgcaaga tttcgcaatt ggaagaagag gtagccaaca tgcgtgattt ggccaagttg 2640 tctatctctc ttggaaccca atttggagaa aacatagaca atcctcctaa tcaaacagcc 2700 acgccagaca atcctccaat ccatatatcc ccacctgaac ccattcgtcc aaatgccttt 2760 ccaccacccc acgcccaaaa tacccaattt ccatttcacc actattacca acataccaaa 2820 ccaactgtcc cagaaacaac cccaaacaca aatatcccac atacttttga aaacaacaat 2880 cccaatccca tatacgttga aactgcccct ctgactcatg acctccatga gtcagagtcc 2940 catcagaaag acatcttaat aaaaaccctg actgagagat tagacaactt gaccaacagg 3000 gtacaacacg tggaaggaaa caaaaagttg ggaggattgg gctatgaaga tctgtgcatg 3060 catcctgatg tggaactgcc cgaaggatac aagcttccga agtttgagac gttcaatggc 3120 attggggatc ccaaagccca cctacgaatg tattgcgaca aacttgtagg ggtgggaaga 3180 gatgagagga tactcatgaa gttgttcatg aggagtctta ctggggaggc cctatcatgg 3240 tacattgagc aagactcgcg gaaatggata aaatgggttg atatggcaac tgacttcatg 3300 aataggtttg gtttcaatat tgaaaatgcg cctgattggt tttacattca gaacctaaag 3360 aagaaaccga gtgaatcctt cagagaatat gccataagat ggaggtctga ggcggctagg 3420 gccagacccc ctatggaaga atctcaaatg aaagactatt tcatccgtgc ccaagaacta 3480 caatactatg accgaatgat gctggtggct gaaaagagtt tcgctgaaat catcaaacta 3540 ggcgaaagaa ttgaagaagg cataaagaat gggactatca tcaacttgga ggctttacaa 3600 gcaaccaaca aggctctgca atctggtgga atgacagaga gtcgaaagaa aacaggttct 3660 gtaatgatgg ctcatggaac taggacccct ttgaggcaca agacaacaaa cccaccacca 3720 tccccatacc ctcacacccc ataccttcac accccatacc ctcaacatcc ctcagctcca 3780 ccccctatat ctccccaacc catgccaata tattaccaaa atgctcctcc tcaatatttg 3840 catgcctcat atcctgtcta taatgttcaa ccaacacact tctaaactcc accacccact 3900 caaacaccaa attaccgaaa cagaccttcc tatgaaagaa gacctacaaa aacctatacc 3960 cctttggctg aacccatagc acaactttat gagagactga aacaagctgg gtacgtctct 4020 ccaattcctg cattacctgt ggacgttcgc gcgaaatggt acgaccctaa caaggtctgc 4080 gcctaccatt ctgggatgaa gggccacacc accgaagttt gcagagccct taaggataag 4140 gttcaaatgt tgattgatac aaagaccatc caactgaagg atcctacacc gaatgttgcg 4200 aataatcctc tccctaacca tcaagtcaac atggtggaag ctggtgatgt ctgggattgg 4260 gaagaatcta tctgggccgt cgaaacagag gaagccatgc ctaccactgc ccaggcacca 4320 ctaatagtgc aaggactcgc cccatttgaa gtagaagttg ctgcacccag accaccattc 4380 gctgtctata aggcatcctc cccaacacaa tgtgacacac atgctgtacc ttgggattac 4440 aacaaaagag aaacaaatgt ggaagagaca gatgttgcaa caggggtcac cagatctgaa 4500 agaatttaca cttctgaaaa tttggttcag ggaagctcta gcaaatccaa agcgccaatc 4560 gtagagctcg aggatcaaag tatttggaaa aaggttaaag ctaaagaata ctctgtcatt 4620 gagcagctga gtaaaacccc ttcccaaata tcaattctgg agttactaca atcttccgaa 4680 actcatcgag atgcccttct gaagatcctt ggtgaagctt atgtcccgtc taacatcact 4740 catggagagg tatcccaaat ggtggggcag gtctttgagg cttacaaaat atcttttcac 4800 aaagatgaac tgccaatcga aggaacaact cacaataaag ctttgtacat ttcggttcag 4860 tatcaggata aggtgataaa caaagcatta gttgatgcag gttcaggttt aaacatttgc 4920 cctctgagca cactgacgag gctgggtgtg gatagtgcaa aaattcagac atggaagatg 4980 aatgtgaggg catttgacgg ctctcagaga ggcactattg gggagataac cttggacatg 5040 ctcattggtc ctgtcacttt ccccatagct ttccaaattt tggacatccc ttcatcgtac 5100 aacttattat tgggtcgtcc atggattcat atggctggag cggttccatc tactcttcac 5160 caatgcctga agtttgaatg ggattacgaa gaggttgtgg tccatgggga aaaagggcat 5220 cctgtataca cgattgaagg aagagagaat atggatggcg aaatgtacca tacagtggag 5280 cttgttggta atattgagtt gcaaccttgg ttcagccaaa aaatcataga tatgatggcc 5340 tggttcggtt tcgagcttgg gaaaggtttg ggggctaaat tacaagggat agtcgaacct 5400 atacagcctg ttcgacattc caccactttt ggtttgggtt ataaatacac caccgaagaa 5460 tggctcgatt ggcgaccacc tagagatggg tactactatc cattgaagaa acccataccg 5520 ccattgtatc aatcattttg atcagcaggt ttcatgggag acaatattga tgagatctca 5580 gacgacttga aggggttatc gctaaccaaa gaagaaggga aagtttgcaa cgtcgtgatc 5640 aacgaggagg agaaaggggg ccctagtgga agcaaagagg caaagatcag cgtcagcaac 5700 tggacctcga ctccatccag acctcgtcga gcatctgggt agctttggaa gatgtttttc 5760 tatcaaattt taattcaaat aaaggagttt ttaataaacg ttttaattcc cgtccatgta 5820 ttgctttcaa atgaggactt atgaaatttt caaatcttta tcaataaagt tcttttcccc 5880 atttttttgt cttgtattta atttttacta tttttttttt ctcaccagca aaattcatta 5940 taaaaatgtc gaatctgaga ttgtggcata caatgagact gctcagctta accttaatga 6000 cttagaagaa gtcgaagaca atgaggttcc cgaggagtta atcaaaaggg ttgaggaatt 6060 cgaggaaaaa cccaatccaa atttggtaga gacagaagtg gtgaatttgg gaaatgcaga 6120 ggtgatacaa gaaacccgag taagcatcca tatgacaaaa gaagacaaga aagagtatac 6180 cgagtttctc atagagaata aggatatttt cgcgtggtcc tacgcagaca tgacagggct 6240 aagtactgca atcgtagccc atcgactacc cactgatcca gcatgtcctc cggtaaaaca 6300 gaagctgaga aaatacaagc ccgagatgag tttgaaaatc aaagaagaag tatcaaagca 6360 attagatgtt gggatactcc aagtgacaga atacccaact tggcttgcaa atgtcgttcc 6420 agtgcccaag aaagacggca aggtcagagt ttgcgtggat taccgagatc tcaataaagc 6480 tagccctaaa gataactttc cattaccaaa catacacata ctgattgata attgtgctaa 6540 gcacgaaact cagtcatttg tggattgctt tgccggctat catcaaattg agatgcacaa 6600 agacgacgct gagaaaaccg ctttcatcac gccgtggggc gtctataact acaaggtgat 6660 gccttttgga ctaaagaacg ctggagctac gtacatgaga gcgatgacta ctttgtttca 6720 cgacatgatc cataaggaaa ttgaggttta tgtggatgat gtcatcatca aatcaaagga 6780 aagtttaaat catttggagg atttacggaa attctttgcc aggctacgca agtacaatct 6840 gaaactgaat ccggcaaaat gtgtcttcgg tgtgcctgct ggaaagcttt taggtttcat 6900 tgtcagtcgt cgaggtatag aattggaccc gtcaaagatc aaagccattc gtgatcttcc 6960 cccaccaaag agcaagaagg aggtaatgag tttcttgggg cgacttaact acatcagtcg 7020 tttcattgct cagtctactg tcatctgtga acctatcttc aagctgttaa aaaaggatgc 7080 tgcagtgaaa tggacaagtg aatgtcaaca ggcatttgac aagatcaaag actatctatc 7140 caatcctcct gtattggtgc caccagagtc aggtagacca ttacttttgt atattttagt 7200 attggataat gctttcagtt gcatcttggg acaacacgat gaaacaggga ggaaggagca 7260 agcaatatat tatatgagca agaagttcac gtcgtgcgaa gcccgatact ctctattaga 7320 gcgtacctgt tgtgctctaa catgggttgc ctaaaagcta cgacattacc tctcatcgca 7380 taccacttat ctgatttcaa ggatggatcc tttgaagtat atctttcaaa agcctatgcc 7440 cacaggtaaa ctggcaaaat ggcagatact gttgagtgag tttgacatag tgtatgtcac 7500 gcaaaaagca gtgaaaacac aggcactagc agaccatatg gcagagaatc ccgtggacga 7560 tgattacaga ccgctgaaga cctacttccc agatgaagag gtggcgtttg tgggagagga 7620 catttctgaa gaatatgatg gatggagaat gttttttgat ggagctaaaa atctgaatgg 7680 atgcggcatt ggggctgttt tgatctcacc caccgggcaa cattatccag tatcagcaaa 7740 actcagattc ctttgctcaa aaatatggcc gaatacgaag cctgcatact aggtctccga 7800 cgggcgatcg acttggatgt ctaggaaatg ataataatag gggattcaga cctattgatc 7860 catcaggttc gaggtgattg ggcaacaaaa aatcgaaagt tgttaccata tttggagtgc 7920 gtgcgcaggc tatgtaaaag gtttgtcaaa acagaattta gacatgtacc aagggtccaa 7980 aatgaatttg cagacgcctt agccactctg tcttctatga ttcgacaccc tgatcacaat 8040 tacatcgatc ctattcacat tcatatacat gaacaaccag cttattgttt ccatgttgag 8100 gaagagcctg atggaaagcc ctggtatgat gacattagaa gatatttgaa gagtggtgaa 8160 tacacagaag atgcaacaag tgtacaaaag cgtacaattc gaaggttagc aacccaattc 8220 ttcttaagtg gggaaatact ctatagaaga actcccgatt tgggactgct aaaatgcgtt 8280 gaagcaagag aggctcgcag gctggtcgaa gagatacatg caggcacctg tggtcctcac 8340 atgaacggtt ttacattagc aaagaagatt ctgagatcag gatattattg gctaactatg 8400 gagacagact gcattcgcta cgcccagaaa tgccatcaat gtcagactca cgcagatatg 8460 attcgagtac ctcccaacga actccatgtc actagttcac cttggccgtt cgcagcatgg 8520 ggcatggatg tcattggtcc aatcgagcca acagcatcca acgggcacag attcattctt 8580 gttgcaattg actatttcac caagtgggtt gaggccacct cccataaatc agtgacaaag 8640 aaagttgtgg atgactttgt caaaaacaac attatttgta ggtttggaat tcctgagtca 8700 atcatcaccg ataacggcac caacctaaac agtgacctga tgagatcaat gtgtgagaag 8760 ttcaagatca gtcatcgaaa ctctacagca tacaggccac agatgaatgg ggctgttgag 8820 gcggcaaaca aaaacatcaa aaggatattg cgcaagatga tcgataatca caaacactgg 8880 caggaaaagt tacctttcgc attgctgggg tatcgtacca caatcagaac ttccacaggg 8940 gccacacctt acttcttagt atacggcacc gaagctgtga tacccgccga agttgagata 9000 ccttccctaa ggatcatcca agaagcaaag ttgagtgatg ctgattggat acgaggtcgg 9060 gcagagaatt tggcattaat agatggaaga agaattaacg ccatttgtca tggtcagctc 9120 tatcagaata gaatggccag agctttcaac aagaaggtta aacccagaca tttctcacct 9180 gggcaactgg ttttgaagcg gatttttcca aatcaagacg aggcaaaggg taaattttca 9240 ccaaattggc aaggtccata catagtctct cgagtactga caggcggagc cctcatactt 9300 gcagaaatgg atggagaagt ttggccaaaa cctatcaatt cagattctgt gaaaaagtat 9360 tacgtctaga gattgattca tgctcttttg taatttggaa ctacgtcaga cctgattccc 9420 atttaagagg ggatacgtag gcgctcctat ggggttcggt cttattataa ataaaacttt 9480 catttctccc ttttctactg ataactgggg cagaattttt gagaggatct caaaaattcc 9540 atcaagactt ctcctggcac atcttcatac tggggcagaa attttgagta aactcaaaat 9600 ttcaccaaaa gtttcttctc aacaagcagt cagcttacaa cgaagattaa atgatagctc 9660 cacttttgag tcagacgttg taaagtctca acctatgcca tggtcaaaga ttcgacatca 9720 gcttttatta aatgataatt tcaaaatctt tgaaagtttt gtttttatta ttattatttt 9780 ttctctcctt ttcccttttt ttttatgaaa aaaaaaaaca aacgctcgaa gaggtgtgga 9840 tggcaagcca aaggagcacg ctgcgccaaa tcacggatac agatcaacct tcccccgttt 9900 aaactaacta tttttctttg aatgtagaaa atacaggtac atatacaaag gcaactgcaa 9960 caatcaacat cacaacattt gagcccgaca tatgacactc gatccttcca ataaggcgga 10020 cgcccaagct actgtatgcc ctcaagcaac tactgtgctg acaaattaca ttatgcccga 10080 tattgcatca tttcgcacct acgcttgata tcaccctatg ctcaaagaac tacatcatta 10140 tgttatgccc gagaatgccg aaatgcatca tttcatgtgc ttgacatcgc atgatcccga 10200 agaaacacat tattgcacgt gctcgatata tcatatgccc gaggaaatac atcatcgcat 10260 atgcccaata ttgacttatg ctcgaagaac cgcattattg catgcgctcg atattttatg 10320 tgcccgaaga aatgcatcat tgcatgtgct cgatatttca tgtgcccgag gaaacacatc 10380 atcgcatatg cccaatattg acttacgctc gaagaattgc attattgcat gcgctcgata 10440 ttttatgtgc ccgaagaaat gcaccattac atatgctcga tactgcatgt gcccgaagtt 10500 tgcataagct caagattgca tcgtgctcga agtttacatg tgcccgaatc aaatcaagtc 10560 ataagtatca acagacgtca aaaacagata cgctctcttt actcattagt tatattccaa 10620 aggcgtcatc ctccaaaggc gtcatctttc atggcctgcg gacttcatgt catgacctga 10680 ggacttattt tatgcatatc atgttcctaa ggcgtcatag tctaaaggca tcatcctcat 10740 ggcctgcgga catcatatca tggcctaagg gtttaatttc tgtctatcat gatccgacgg 10800 tgtcatagtc taaaggcgtc attttcatgg cctacagaca acatttttca tgacctgagg 10860 atacaccctg catatcatgg ccctagacat catagcctaa gacgtcattt tttcacgatc 10920 ttaaggcaaa cattcatggt caacatggga attgcatcat gtttacattt accgtttatt 10980 ttgatgtgta tgttctaatt actctacata ggttatatta caagttacag atgtgcagat 11040 tacagacaaa gtcgcctttt gaacggctgt tcacttgttt acaagcgacc ctccgacaaa 11100 ttcctggcta ctcgcaccat catttcactc ttcatctatc attcaggcta ccatgaagat 11160 atcttcagat tcaattcgcc actgtgacct actgtctctt catctaggct cgtccgcctt 11220 acaatgcgac atctaggttc gtccgcctta caatgtgaca tctaggttcg tccgccttac 11280 aatgtgacat ctaggtttgt ccgccttaca atgtgacatc taggctcgtc cgccttacaa 11340 taggatattt aggctcgtcc gcctcaaaac gacatttagg tttgtccatc ttatagaaca 11400 tttaggtcgt ctatcttaaa gggacattta ggcttgtccg cctcatagga catttaggtc 11460 cgtccgctta taagatattt tgttcgcttt ataaaacatt taggctgtct gccttaaaac 11520 gacacttagg ctcgtccgcc ttaaaatgac gtttagattc tccatataac tagatatttt 11580 cgtctattaa tatatcttta tagtgtcaaa tctattggag tttgacatca ttcttcagag 11640 atgggttcaa tttttcaaga agttacagac aatcaaggct tgcagtacgt ctcaaacaga 11700 tacgcctttt atcacctctt gtctatttaa tagaactcat attttattat tattggtcat 11760 actttattta tttataagct aacattttat ctagaatttg cagatatgat cgatcgcctt 11820 tgatcacaat tatatcgcta tcctctatca attcttcgcc tttcatactc cgaacccttg 11880 ttcagatgtt gataacccca ctctatcatg ctcttcacgc ttctctgtca tactctttta 11940 gcctctcaat ctctctcttc tcgttactct aatcttatcc attcaagccg atatcgtgcc 12000 ttccaaatac cttaccactc tttcaacttt taagagtttc atttgctctt gaatctagaa 12060 ctacacacga cctgattctc gtataaccag agatatgtag gcgacttaaa accaaagtct 12120 cggtcgtacc cttttttttt caactctact tcgcttcaat tgatccgctg acatctgtcg 12180 tcggtcggac aaaatcggct actaagtcaa cgttggttgc ctgacaattc attcttcatt 12240 ctcaatcaac caaggggcag ct 12262 // ID Ogre-PT2_I repbase; DNA; DCOT; 12216 BP. XX AC AC182676; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-PT2; Ogre-PT2_I. XX OS Populus trichocarpa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus. XX RN [1] RP 1-12216 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC182676; Positions 39382 51597. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 6319..6556: putative intron. CC Note: Coding regions are disrupted by mutations generating stop CC codons at 1709..1711, 3761..3763, 7704..7706, and 9576..9578. XX SQ Sequence 12216 BP; 3912 A; 2169 C; 2952 G; 3183 T; 0 other; gaatggcgac tccactgggg accttgtgga ctaagctttg tttttgtctg atttgtgttc 60 gtgtgtttat tgttaatata cctttccttt tgttacctgc ttatacgctt taaatatttt 120 tacacatatt gttcatgcat ttatagaact gtctcataca tcttatagaa ctgtcacatg 180 catcacatac tttgattatt gagagtacac acaaacttta agttaagtgg gggactagca 240 gcttacctta cgactgttag tcaaggttta agtttgtgta aaccccaact cttcgctgag 300 tgcttagact ggtaatagtt ggtacatgtg accatctcat tgcctacaag cccccatatt 360 gcctccacga gggcaatcac tgggacagca agagaccctt tttagagact gaatagccaa 420 cctaccctcg tcaaacacaa aagatttaga accaggctat agggtgtatg cccccacaaa 480 atacattttt gcataacata acctaaacca taaagtattt ggttttcagg tcattttgaa 540 acgataagat ggccatcatt accaaattta ctactgtgga atatgggcag aattctgaat 600 tgtcacaact atagagggag attgttctag atatgatgca aggaagcttc cagtagtcaa 660 agacctgaat tgtgtagtat atgagatgaa gagaatattg ggccatagtc agaatattga 720 tgaggcggca ttttttggga agtatgggcg attattggaa attgcaaaga taggagtatt 780 gaatccagca attaaagctt tgattaactt ttgggatccc gattacagat gcttttcctt 840 tggaaatgtg gatttgtgtc ccactataga ggaatatgga atgttgatgg agtttcccaa 900 acacctgcac caagtttatt ttcctttgag aaatgacaag gtgattcctg agttgtcgaa 960 attattgaag attccacatc tgagcagatt tttggagaag aatggcagcg gtttaaagtg 1020 gaaatttttg gaggttgaac tagaaaagaa aaaggagcaa tacgccttag tgttagaaag 1080 agacaggtta atcgctctgg ggatctatgg tctcgtgtta tttccaagct taaaaggggt 1140 tataagtcta gaagctgctg ctgcattcgt ggaatatgaa aatactcatg tcaaccctac 1200 aactgccata ttagctgaga ccttgctgac cctcaaccat tttagaaaaa cagggaaagg 1260 cgcagtaaga tgttgtactc agttattata catctggatg gtaagccatg ttgaaaccaa 1320 gaagccgatc tttaataatt tttggtggtt taaccaaaaa cccttgaaga tagtagagga 1380 agaagaattg ggaatcctag gtgatcaggg ttggatgaaa aaactccaag agttacctag 1440 tagcaacttt agttggaagg ccccttgggt taaatcagtt gatgtcatag taagttgtgg 1500 acaaaaatgc tgggtacctt taattgggat cacaggttat gtcagctacg ctccggctct 1560 ggtgataaga caattaggtg gcatacaaca catcccaaga actgtgggac ttgctgaatt 1620 ttccggattt ttcaaggatc aatccgcgcg agaagttctt gaaaccatca aacaagattg 1680 gagccagttg actctaattc aaaaggagtg agaaagtttg agagacccta gctcaagtga 1740 aggatatgaa aagtggagga atttgaccct gattgccact ccgaaaaagc catgttctga 1800 agatgggcct tcacgaattg aagaacggtc cttgaaaaga aaaaaagtca gtaatgaaga 1860 agaccttatg gagcaaatag aaaggctaca aatagaattg ggaaagagta agggagataa 1920 agcagcatta gaaaggatga tgatggaagg agataaaagc agagtgtttc taaacgaaca 1980 gctcgaatcc aaagatgcaa aaatagggat gttggagctg caattgagca aaggaaaggc 2040 cgtaatagaa gagtctgaga aagaaagagg aagactgatt ttggatttga tgcaaagcag 2100 ctctgagttg gaagcattga aagccgactt cgatggctat caagagaatg ttgagtacaa 2160 tcaggacaaa ttcttgcatg ttaaagcaga gttgttagac cgaattgaga agcatgatga 2220 gttaaacaag aaatatatga tgatagaaag tcggctggct gaattacaag agttcgaaag 2280 aaagggaaat gaagaagagg ttgtgaaggc agatttggca gctaagaaaa ttgaaattag 2340 aatattgaag gtgaagtttg acaaagaacg agaaaaggtg aaacagttga ccaacaggtt 2400 ggaagtttca gaaaaacata aagaacagat cgacaccaac aacaatacct tgaatcggaa 2460 caacatggtg cttatagaga agatggccaa ggtagatgag caaatggatg aagctgccat 2520 tcacgcacga attattagag ccaatgctcg aagggtggga agggacatct ttcgttatcg 2580 acaaagcttg gctgagacag atgccttttt agagaaaatt gagaatcgag gcctcgcgtt 2640 cctaccagtg gctagagata tggatgaaga ggaagattga tgtatttctc tttttattat 2700 tttgtaccct ctcttcaaga gatgtattag ccaatattaa tgaaaagagg ctttgaccca 2760 tcttttataa atataagcct accaaagcag cagcttgagc acaactactc ctgataagga 2820 acgtgacaaa aagagtccat gcccattaca caagaggaat gttggccatc gatcgttttt 2880 ttttttaaaa aaaacaagtt tctaagagta ttcatgcatt gtttctttat catacattca 2940 tttacatttt tccatgcgtc ccagaccgtg aaacataggt cccacatcca aaatccacaa 3000 cacccggtct cgagcgagaa tggagaacga agaaagagct cacatagagt cacattatca 3060 gaccgagttg gagtctgtaa agaatgaagt ttctcggcta accgacttac ttgagcagct 3120 tctaagggct aagaatgggg agggaacatc agcacgacag cttgaaggag cgccagcagt 3180 tcacattcct caagcatctc aaaaccaggg ggcaaactcg gccaatgaac aacagtttgt 3240 gcctattact cctatcctac cacctcatac tccagtcact gttgacctaa caacggaggg 3300 agtcccggat aataggtctc ccagtttgat agaccaagac aagctatttg ctctggaaga 3360 aagattaagg gcagttgagg gtaatgactg gtttgaccct atgcgagcag ccgaagtatg 3420 tttggtacca aacatcgtgg taccaaaaga ttttcgaata ccagagttca ttaagtatac 3480 cgggttggaa tgcccaaaca ctcaccttcg atcctactgc aacaaaatgg cggaagtaat 3540 ccgtgatgat aaaatgttaa tctatttctt tcaagatagc ctagcaggat ccgctttaag 3600 ctggtacatg aggttagaca gcatcaggat caagagctgg agagacttgg tggaggcttt 3660 cctcaaacag tacaagttta acatggaaat cgctcctgat cgaacaagtc taatggcaat 3720 ggagaaaaga agccaggagt cagtaagggc ttatgcgcaa tgatggaggg atgaggcaat 3780 gcatgtccaa ccccctttga tagaaacgga gatggtgagc ttgtttgcca ataccttcaa 3840 agcaccttat tatgagcacc taatgggtag ctcctctcaa catttctatg atgcggtacg 3900 catagctgag aggatagaac aagggattaa agctgggcga atagcgatgc cagtggaaaa 3960 gaagggtttt attggaagaa agagagaagg cgatgttaac aatttggaag acgggtataa 4020 gggtaagaaa gtagattccc acaatccaca agtacctacc tctcaattct cacgcataaa 4080 ctttaaccaa tctttttccc ctaatcgaac aaataaccaa tcaaactacc aaaatcacta 4140 ccaaagaccc catacgagat acccttcaga acaactacca ccgctaccca tgcctttgaa 4200 ggacatgtac gccaaactgt tgagcattgg gcatatagct cctatcccta cactaccatt 4260 acaaccacca ttcccaattt ggtacaagcc cgagttaact tgtgagtacc atgcgggtaa 4320 tcctgggcat gggattgaaa cctgttacgc tttcaagaaa agattgctgg agcttattaa 4380 gataggatgg gtatcctttg aagacaagcc caatgttaat tcaaacccgt tgcctaaaca 4440 tgcctcaagt agtagtggaa taggcatgat agaagttgga aatcaatgca aggtgttgaa 4500 ggtgtctatg gaaaagatgt actacctgtt agtacgatca ggatttctag aggcaaatat 4560 ggaaggccat tcggagggag gtagctattg tgagttccat ggaagagatg gacattatat 4620 tgaggattgc atcgagtttt gcgaaaagat tgcaaaaatg tttaaaatgg ggcaattgag 4680 aattgaaccc atggagaacg ggggtgaggt gagtatgatg gaaggtcaaa tggagatgac 4740 aggagtatgc agggtccaac aaacagctaa tggtccccca aggctaatct tggttaaacc 4800 atcctacaca aaagggaatc acaatgccat gccttataat tatggttatg cctccaacgt 4860 tcaagctcct cttcctttgt tccagactga gataagtggt ttgaccagga gtggtcgttg 4920 ctttacttcc gaggagttga ggaaggaaaa gggtaaagaa gtggtagatc ttgacaaagc 4980 gctagaagtt aataagccag taacagaaga ggagtcgaat gaattcctga agttgatcaa 5040 gcatagtgaa tattgcatag tagatcaact aaagaagact ccagctagga tctcccttat 5100 gtccctgata ctcagctctg agccgcatcg aaacgccttg cagaaggtat tgaataaggc 5160 atatgtaccc caagacattg aacataaaac catggagcat ctagtgggaa ggatccatgc 5220 aactaattac ctgtacttca cggctgatga gcttgatgct gaaggtaccg gacataacaa 5280 gcccttatac attacggtta gatgtaagga ctgcctcata ggaaaagtac tcattgataa 5340 tggctcggcc cttaacgtgt tgccaaagca catgctagaa gaaatgccga tcgatgaatc 5400 ccatataaag ccaagtacta tgatggccag agcgtatgat ggctcaccta ggccaataat 5460 tgggacttta gaagtggagc tatatgtggg accacaaatg ttcctagtaa cacttcaagt 5520 tatggatatc cacccttcct atagtatgtt gttaggaaga ccttggattc atgcagcggg 5580 ggcagtagct tcgtcattgc accaatgcct gaagtatatc atgaatggga tgttggtaac 5640 tgtcaaggcc gaggagacag tatccatgat aaagaatgta gctgtgcctt ttatcgaagc 5700 gggtgattgc aagggtaaca atatccatgc ctttgagatt gtgaacaccg actgggtgcc 5760 agagaacaca gtgctaagaa ggccaaggat ctcagaagca gcaaggatgg caagtctatg 5820 ctttttgaac cgcgggatcc catttcagta taactttatt atcaggatac cagaaggggt 5880 caatctggca aggatgaaaa gtgctgctca aaaatttggg ttagggtacc aacctaacca 5940 aaaggattat cggtgggctg ctggttggag aagggcaaga aggatggcta gaattaaagg 6000 aagagagcct gatgaagaaa agctagaaat ccctcccctt tgcgtgtcat tcccaaaagc 6060 tgcatacata atgcaacatg ataaagaagc cgaaagcctt gatcaagagc tgtcaaacat 6120 gagcataaat accttggggg aaaacaaggt ggaagaagat gacatgaaga cagtagcaag 6180 aaagggagat gaagcactcc cacaactgac ggtctacacc atagaagagg tctccgccaa 6240 gacctttgtg cgcaagttgg ctcaagacga gaagtttcag aattgggtga cccaagaagc 6300 tccagtggtt ttcaaaatgt aaaccaattt tgtttgtctt aacatgcttt tgtcattgct 6360 ttgtttggtt ttcttttgtc attgctttgt ttggttttca tttatttttg ctagtcgaca 6420 atcaaggctc aattgttggt tagactttat gtttgtcatg gagcccactt tttctttaaa 6480 taaattgtga gatcatgcac tttccacaaa ttgctttctt ttttatgcat ttacaccaaa 6540 cacttcccgc tttcaggaat cctgaaagcg gatctccaac aacatcacat atatttagca 6600 tcaagaataa atggccaaac ttgaacgagc atgtgatagc tatggaagaa gaagaatggg 6660 atgaaagcaa tattagtgaa ttcaccaggc tagtagaaca acaggaacaa acttggaagc 6720 ctatcgccga ggaactcgaa accatcaatg tgggtagtga tcagctcaag aaagagttga 6780 aaataggtac cttagttact tctgaacaaa ggacaaaaat gatcgccctg ttacaagaat 6840 atgcagatgt ctttgcttgg tcttatgaag atatgcccgg tttggacaca aatattgtag 6900 tacacaagat accgttggaa gaaggttgta aaccagtcaa acagaagctg aggagggccc 6960 acccggatgt ctggatcaag gttaaggtag aactcgagaa acaatgggat gctggctttc 7020 tagaagtagt tagatatcca caatgggtat ctaacattgt tgtggtgcct aagaaggagg 7080 ggaagattag agtgtgcgtg gattttcgga atttgaataa agctagcccc aaggatgatt 7140 ttcctctacc acacatagat gttttggtgg acaacgcggc ccggagttcc acatattcct 7200 ttatggatgg tttttcagga tacaaccaga taaaaatggc tccggaagat aagacgaaaa 7260 caacttttgt cacaccgtgg gggacattct gctataaggt catgccattt ggattgaaga 7320 atgcaggagt aacctatcaa agagcaatgg tgactttgtt ccacgacatg atgcacaagg 7380 aaattgaggt gtatgtagac gacatgattg ccaagtctaa aagaggagag gatcatgtcg 7440 aagttttgag gaagttgttt gagagattga ggaagtatga attaaggctc aatcctgcaa 7500 aatgttcatt tggagttaaa tcgggtaagc tgttaggatt tgtggtaagt gatagaggta 7560 tagaggtgga tccagataaa gtaagggcca tccaagctat gtcatcccct aagacggaga 7620 aggaagtaag aggattcttg ggaaggataa actacattgc tcggttcata gctcagttaa 7680 caacgacgtg tgaaccaata ttctgactac taaggaaaaa gaatcctgga acctggaatg 7740 aggagtgtga ggaggcattc aataaaatca agcattattt gcaaaatcca cctttactgg 7800 tccctccggt atcgggaaaa cctctagtat tgtatctaac agtgactgaa gcagctatgg 7860 gatgtgtatt gggtcagcat gatgaaaccg gaaggaagga aagagctatt tattacttaa 7920 gtaagaaatt cactgaatgt gagtctagat acacggagat agaaaggctt tgttgtgcgt 7980 tggtgtgggc agcaaagagg ttgcggcatt atatgttata ctataccact tggttgattt 8040 caaaagtgga tcctctgagg tacatttgta acaagccatt tctctcaagt cgaattgcaa 8100 ggtggcaagt gctattagca gaatatgaca tagtgtacat gacaaggaaa gccgtaaaag 8160 gaagtgcaat cgcggaccat ctggctgata atgctgttga agattacgaa cctttggatt 8220 ttgactttcc tgatgaagat atattgtcaa tagagaaaga agaagagaat acagattggt 8280 ggacgatgtt ttttgacggt gcagtgaacg tatatggtaa cggggccggt gcggtaataa 8340 tctctcctga taagaaacag tatccagttt cggttaaact acatttcgag tgcaccaaca 8400 atacagctga gtatgaagct tgtatccttg gtctagaagc gacattagag ctgaagataa 8460 agaagttaga tgtgtacgga gattcaatgt tgattatctg tcaggttaag ggggaatggc 8520 agaccaaaga ggaaaagttg aggtcgtacc aggaatacct gtccatgcta gcgaaggaat 8580 ttgaagaaat tagattcacc catctgggaa gagaggggaa ccattttgca gatgctttgg 8640 ccacgctagc tgctatgact accattgatc tcaagtgcaa ggtacaaccg gtacacattg 8700 acattagaaa tgacccagct cactgttgct tagttgaagg agagatagac ggacagcctt 8760 ggtattatga tatcaagaac cttgtgcaaa atcaggaata tccggtggga gcctccaaaa 8820 cggataagaa aaccttgaga aggttggcta cagacttcta tttagatgga gagattctgt 8880 acaaaagatc atttgatgga accttgctaa ggtgtttgaa tgaggcagat gctagaaagg 8940 cattacggga ggtccatgag gggatttgct caacccatgc tagcgggcat atgatagcaa 9000 ggaaaatcca aagggctggt tatttttgga tgacactaga gaaagactgt atcgactatg 9060 tcaggaaatg tcataaatgt caagtttaca gtgacaaggt caatatgcca ccagctcctc 9120 tgtttaatct aatatctcct tggccatttg caatgtgggg aattgatgta attggtccgg 9180 ttaacccaaa agctagcaat gggcatagat tcatcctggt ggctattgac tacttcacca 9240 aatgggtgga agctaattcg tatgcccatg taacacagaa ggtagtgaag aggttcatag 9300 aaaaggatct gatttgtcga tatggtcctc cggaaaagat agtgaccgat aatgcacaga 9360 atttcaatgg caaaatgata gtggagttgt gtaccaagtg gaagatcaag cattcaaact 9420 cttcgccata ccgaccaaag atgaatggcg cagtagaagc cgccaacaag aacatcaaga 9480 agattattca gaaaatggta gtcacatata gagattggca tgagatgttg tcattcgctc 9540 ttcacgcata ccgcactaca gttaggacct cgacatgaac cactccatat tctttggtgt 9600 acggtatgga agcagtgatg cctttggaag tagaaatccc gtcgttaaga gtattgatag 9660 actccgaatt agaagaggcc gagtgggcca aagtgagata tgagcaactg aacctgatca 9720 gtgaaaagag gatggccgca atatgtcatc accaactgta ccagaaacgg atggccaagg 9780 catatgataa gaaggttaga ccgcggttgt ttcaagaagg ggatctagta ttgaagaaaa 9840 tattgtcgct acctggagac gatcaaagca aatgggcacc gaattacgaa ggtccttaca 9900 tagtaaagaa ggcattctca ggaggagcac tgaagttggc tagaatggat ggagaagacc 9960 tagctcgacc tgtgaattct gactctgtaa aaagatatta tgcttgatgt aggctcctaa 10020 atcaataaag caaagtttgg ccattgactt ctttctcttt tgcattgatc tcacaacagt 10080 catttttgca ttaatcccaa cagtgcatgt cttgtgttat ctcatttaaa aagtttagca 10140 tcggctgaac gaatttcttc tctctataaa agcctagact agaatcacac ccctacactg 10200 ggggcaataa gagatatttt catgtacgaa agcctataga ttttaaaaac caagctaaaa 10260 catttgacaa aagcatgaca aagaggcaat gacaagtcat acattttgga aaaaggacta 10320 tttgaagaaa gtgagagatt tcttctccaa gaatatgatc ggaggcaaca cgagagatga 10380 atccagcata cgacttcaaa agcaagctca tgttaagagg gaatctcatg aactcgaaga 10440 agatgatggg gcctatgttt caaaaccagg tacgaatgca tgcatggcat ctaatcataa 10500 atcattgcat atatgttttt tttggatcgt cacaggagga gaccttaata cattccaaca 10560 aaattggaga cgaagaaaaa atcattgagt tgattctaga acaacaagaa gagaagataa 10620 taatgttcaa accctgccat caggaagagc gacatcgagc aatcggtaaa agggaatcgc 10680 tagaagggat tccaggttaa cagatttaca agatagattt ttttggtttt tgattaaagg 10740 agatcgccag aaaggatctc attatttcag cttcaaataa aaggaatcgc cagatggaat 10800 tccaagttga tggagatcgc cataagggat ctcatacttc gctatttgga ggtcgccaga 10860 tgggacctcg tattacctgt tgaaaaaagg aatcgccaga tgggattcca agttaattaa 10920 aggagatcgc cagaagggat ctcgtgtttc attatttgga ggtcgccaga tgggaccttg 10980 ttttttcatt gaataaaagg aatcgccaga tgggattcca agttgactaa aggagatcgc 11040 cagaagggat ctcgtgtttc gctatttgga ggtcgccaga tgggacctcg tattacctgt 11100 tggaaaaaaa aagaggaatc accagatggg attccaagtt gattaaagga gatcgccaga 11160 agggatctcg tgtttcatta tttggaggtc gccagatggg acctcgtttt tcatgaataa 11220 aaggaatcgc cagatgggat tccaagttga ttaaaggaga tcgccagaag ggatctcgtg 11280 tttcactatt tggaggtcgc cagatgggac ctcggttttc atgaataaaa ggaatcgccg 11340 gatgggattc caagttgatt taaggagatc gccagaaggg atctcgtgtt tcattatttg 11400 gaggtcgcca gatgggacct cgtttttcat tgaataaaag gaatcgccag atgggattcc 11460 aagttgacta aaggagatcg ccagaaggga tctcgtgttt cgctatttgg aggtcgccag 11520 atgggacctc atattacctg ttgagataaa aggaatcgcc agatgggatt ccaagttgac 11580 taaaggagat cgtcagaagg gatctcgtgt tttgatattt ggaggtcgcc agatgggacc 11640 tcgtttttca tttgaataaa aggaatcgcc agatggggtt ctaagttgac taaaggagat 11700 cgccagaagg gatctcgtat ttcgctattt ggaggtcgcc acatgggacc tcatatttcg 11760 tttgaatagg aatcgccaga tgggattcca ggtcgattaa aggagatcgc cagaagggat 11820 ctcgtatttc gctattggga ggtcgtcaga agggacctca tatttcaaca ttggttacaa 11880 ggaatcgcca gatgggattc taagattttt tgttaaagga gatcgttaga agggatctcg 11940 tatttcaata ttggttaaaa gggaattgcc agacgggatt ccaagttgag taagcaataa 12000 ttatagattt tggtttagag agatcgtcag aagggatctc aagatgataa attttgatca 12060 tagtttttga agttaaggag gattgctgta aaagacaagt ttcaggtcaa tcaagcttca 12120 accagatcag ttttgggagt tccgtttagg gtttatcttt ataaaactta ctgcgcaaaa 12180 cctctgctcc gtaagcatta taaagagggg gcatct 12216 // ID Ogre-MT4_I repbase; DNA; DCOT; 12091 BP. XX AC AC145061; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 13-APR-2007 (Rel. 12.03, Last updated, Version 2) XX DE Autonomous LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-MT4; Ogre-MT4_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-12091 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC145061; Positions 78938 91028. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC In Medicago truncatula, there are distinct subfamilies of CC Ogres differing in their LTR sequences. CC Additional annotations: 6054..6356: putative intron. XX FH Key Location/Qualifiers FT CDS 701..2110 FT /product="Ogre-MT4_ORF1" FT /translation="MRNLRQYSFRRPDLLSLRKLGKKVVCMDDFYKQHGNL FT MGVVKTDIDEGLLNAFVQFYDPGYHCFTFQDYQILPTLEEYSCWINLPVLD FT KVPFSGLEEIPKHSTIAAALHLETDEVKAHLITKGKLLGFSTDFLYERTTF FT FDKMGVAYAFNSILALLIYGLVLFPSLDNFVDIKAIQIFLSRNPVPTLLGD FT TYLSIHRRTQAGRGTILCCAQLLYRWITSHLPRTPRFTTNPENLLWSKRLM FT SLTPTEVVWYDRVYDKGTIIDSCGKFANVPLLGIEGGISYNPTLARRQFGY FT PMEGKPLSIYLENVYYLNVDDSKGTKEQVVRAWHTIRRRDKSQLGRKTGAV FT HESYTQWVIDRAVQIGMPYKISRFVSAITPAPPLPMTFDTEKEYQERLVEA FT EREVQKWKGEYQKKDQEYEAVMALLEQEAYDSHKKDVIIAQLKKSIREKDA FT ALDQIPGRKKKRMDLFDGPHSDFEE" FT CDS join(2590..6054,6358..9819) FT /product="Ogre-MT4_ORF2" FT /note="gag-pol." FT /translation="MLAAEQENAQLREELVNLKGEMERMALMMETMMAERE FT QAAISNSTPVVVVTAAPEGPPQPSPTTTTTIGLTQPLITDFSSGNMATMGN FT SGFRPLGPQGPFATPQYSMPSGYPWGMPIATNGVFGPGATEMPFAQGQQTS FT AHFQMSQPIPQATMTQAGPTVHVGPQHEEQIYHSDSIMGDDKAIDWEERFG FT ALEKKMSNMRGKEAVVQSIYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNH FT LTMYISKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLKGVTTFEQLAEAFM FT QQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQIRPPLDERELS FT DLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAVSGSSSGGS FT SGVSSSGNKKFGNGYPKRNAQEVGMVAHGGPQPVYSNHPFVANITPQMTAP FT QNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPYYPQQPYQQRPYNPPQQ FT QPRPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPR FT WYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNP FT LPTHGPAVNMIQDDQEEARILSVGDIKTPLVPIHVKMCKATLFNHNHEACD FT ICLMDPRGCIQVQNDMQGLLNRRELVVTREPESKDVCVVTPVFRARRPLVI FT NPNSTKPVGTPLVICVPRPTPTTAQKAVPYKYEGTILEPGSETTSPVVVDN FT IAENSRILRSGRIFPTVGPKSVSVPVDEPVKERNAGKGKAGEQAKEFDFED FT ADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQAFV FT DYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSL FT SNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVD FT LPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSR FT GKLITVSGESAFLISNLSAFSVIGGSSSDGPSFQGFSAEESVGKIETCMAS FT LKDARRVIQEGKTGGWGQLVELPENKRKEGIGFLNSKPGMFDPTRGSFHSA FT GFIHDSPETNAILDDAPGGVTPVFVTPGGACCNWIAVDIPSVTPRSKLNIS FT ESVEHSDPMLSPNFEVPVYEAVAEEDEEIPNEIKWMLEQERKTIQPHQEEI FT EIINLGTEEDKKEIKIGALLDVSVKKRVIELIREYVDIFAWSYKDMPGLDP FT DVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQ FT WLANIVPVPKKDGKVRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVF FT SFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGM FT TKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNK FT CTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNY FT ISRFISHMTATCGPIFKLLRKDQGVEWNDDCQKAFDQIKEYLLEPPILVPP FT VDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHAIYYLSKKFTDCESRYSVL FT EKTCCALTWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQML FT LSEYDIEYRTQKAVKGSILAEHLAHQPIEDYQSIKFDFPDEEVMYLKAKDC FT DEPVFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFD FT CTNNIAEYEACIMGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLI FT PYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTVPVIN FT VQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQTQKYPPGASNKDKKTLRRLS FT SRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAK FT KILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSM FT WGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNN FT LISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEA FT ANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEA FT VLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQS FT RMKQAFDKGVHPREFKEGDLVLKCIKSFQPDPRGKWTPNYEGPYVVKRAFS FT GGALILTNMDGEELPRPVNSDAVKKYFV" XX SQ Sequence 12091 BP; 3454 A; 2599 C; 2606 G; 3432 T; 0 other; gaaatggcga cttcactggg gacttagatc ctacgcgggt taaacccacc ttactttttt 60 tattttgtgc tttattattt gtttatgctt tgtaaatatt ttgcttacat gtttacttta 120 ttacgtgagt ggtgagataa gctctacacc cgagcttgag ggaaacttaa gataggacgg 180 tggtataatc atagttccat gccaagagta ctcttcggta ttggcacatg tgataacccc 240 actcaacgga gggatcttgg aagtatatgt tgtcaacgtg agtactcatg tttggcatgc 300 tattttcaag tgacctttga agttgaggac ctttagtcac ctttaaccca tcttggcctt 360 ttaggaacgt agtgcggtgg ctaatcgaga gtactcttga attagttgat acgcgatact 420 acacccaaac gagactttcc gacgaatata attggaatgg gagtactccc gttacccgat 480 aaatattcgg aagtggttaa agactttggg aacttggtag aacccttgtt acaagtgcaa 540 tctaaaaacc ttagtcctta ccaaatgacg ttgttaccct ttgactccaa catatgaatt 600 taacttcatc atgcatacat gcatccatcc ataaatattt tttccattca tcattttttt 660 ttgaaggact tataaaagct ttgttgtaaa cattgtagat atgaggaacc ttaggcagta 720 tagtttcagg aggccagatc tcttgagttt gaggaagcta gggaagaaag tggtttgtat 780 ggacgatttc tacaagcaac atggaaattt gatgggtgtt gttaagacag atatcgacga 840 agggcttctc aacgcttttg ttcagttcta tgacccgggc taccattgct ttacttttca 900 agattaccag attctcccca ccttggagga gtactcttgt tggattaatc taccagtgtt 960 ggacaaagta cctttcagtg gcctcgagga aatccccaag cactcaacca ttgccgcagc 1020 tctccatctt gaaacggacg aagtgaaagc acatctcatc actaagggaa aacttttggg 1080 tttctccacc gattttcttt acgaaaggac cacattcttt gacaaaatgg gggttgccta 1140 tgcctttaac tccatccttg ccttgcttat ttatggcctc gtactcttcc ctagcctcga 1200 caactttgtg gacattaaag ccattcaaat tttcttgtca aggaaccctg tccctacctt 1260 attaggtgat acttacctct ccatccatag gcgcacccag gctggtcgtg gaactatcct 1320 ttgttgtgca caattgctat atcgatggat cacctcgcac ttaccccgaa ctcctcgctt 1380 caccaccaat ccagaaaacc ttctttggtc aaaaagactc atgtccctga ctccaaccga 1440 ggtagtgtgg tacgatcggg tttatgacaa aggaactatt attgacagtt gtgggaaatt 1500 tgccaatgta ccacttcttg gtatagaagg aggaattagc tacaatccta cgcttgccag 1560 acgtcagttc ggatatccca tggaagggaa gccgctcagc atctatctag agaatgtgta 1620 ttacctcaac gtagatgaca gtaaaggcac gaaagagcag gttgtgcgag cttggcacac 1680 cattcgtaga agagacaaga gccagttagg gaggaagaca ggagccgttc atgaatcata 1740 tactcagtgg gtgatagata gagctgttca aattgggatg ccttacaaga tatcaagatt 1800 tgtatctgca atcactccag caccacccct acctatgacc tttgacaccg agaaggaata 1860 ccaagagcgt ttagttgagg cggaacgtga agtacaaaag tggaaagggg agtatcagaa 1920 aaaggatcag gaatatgagg ctgtgatggc cctactagag caagaagcct atgatagcca 1980 caagaaagat gtgataatcg cccagctgaa aaagagtatc agagagaaag atgccgcgct 2040 tgatcaaatt cccgggcgga agaagaagcg tatggatctc tttgatgggc cgcattctga 2100 ttttgaggag tagctcggtt cagaggcttg agagtctttc agtttgtttt gatgtttttt 2160 gtgtagttac ggagtctatc ccttggcttt gttgttagaa agggaattat ctcgttttat 2220 tttgaaagtt tttcccttgg ctttgttgtt agaaagggaa ttatcttgtt tttctttgaa 2280 agtttatccc ttggctttgt tgttagaagg ggaattatct tgtaatcaac tttgtttttt 2340 tatgatttgt ttaggttggt atgtttacaa aactgctttt ataggtcctt caataaaaat 2400 aaaaaaaaaa tatataaaaa tcgcatattt tggcatatag catatcatgc atcatattgc 2460 attcataaaa agtatcaaaa tccaagtctc atactctcct catttctgcc tcagaaaagc 2520 aaagtggccc ggcgtattca gtacaaaccc gctcgcattc acaacactcg agctcatatc 2580 aagaaaagga tgttagcggc agaacaggaa aacgctcagc tcagagagga actggttaac 2640 ctcaaggggg agatggaaag aatggcactt atgatggaaa ctatgatggc tgagagagag 2700 caagcagcaa tctccaattc aactcctgtt gtggttgtca cagctgcacc tgagggtcct 2760 ccgcaaccat ctccgactac tactacaact atcggcctca cccagcctct gataactgat 2820 ttttcttctg gtaatatggc aactatgggc aactcaggct tccgtcctct tggcccccag 2880 ggtccctttg ctactcctca atattccatg ccttcaggct acccttgggg catgccgatt 2940 gcaactaacg gggtttttgg tccaggcgct actgaaatgc ctttcgcaca gggtcaacag 3000 acttcggcac atttccagat gagtcaaccg attcctcaag ctaccatgac tcaagcaggt 3060 cctactgtgc atgttgggcc acaacatgaa gaacagattt atcactccga cagtataatg 3120 ggggatgaca aagcaatcga ttgggaagaa aggttcggtg ctctagagaa gaagatgagt 3180 aatatgcggg gaaaggaagc agtcgtccaa agcatatatg acctttgctt ggtaccagat 3240 gtaaacatac ctccaaagtt caagatgcct gtatttgaga agtatcaagg ggacacatgt 3300 ccacaaaatc atctaactat gtatattagc aagatgatag cttacaagaa taatgttccc 3360 ttactcattc actgcttcca ggatagtttg actggtccgg cacatacctg gttcatggga 3420 ttgaaaggag tcactacttt tgaacagttg gctgaggcct tcatgcaaca gtacaaatat 3480 aatacctatc tggcgccaag tcgcaaggag ttgcagtcct taacccagaa agataaagaa 3540 tcgttcaaag aatacgcaca acgcttcatt caaaaagctg ctcagattcg tcctcccttg 3600 gatgagaggg aactttcaga tttgttctat gaaaccctga gcccttgtta ttcagaaaag 3660 atgattgtct gtgcatcaca gaagttcact gacttggtgg aaacaggaat gcgtatcgag 3720 gagtgggctc gtaagggagc agctgtttcg ggaagttctt caggtggttc ttcaggagtt 3780 tcgtccagtg gtaataagaa atttgggaat ggttacccaa agaggaatgc tcaagaggtt 3840 ggcatggtgg ctcatggagg acctcagccc gtgtactcta atcacccctt tgttgccaac 3900 atcaccccac aaatgaccgc accccagaac ccaaactatc aatcacccag acctcaagga 3960 cctgcaccat actacccccc attataccaa ccactataca acctacaaca actctctcaa 4020 caaccctact atcctcaaca accataccaa caaaggccat ataacccccc acaacaacaa 4080 ccccgtcctc aagctcccta caaccagcaa aatcaaaaac aacaatttga ccccttgcca 4140 atgacctatg gagcattgct cccttcttta cttgcacaga atctggtcca aactatacca 4200 cctcctcgca ttccggaccc tctcccacgc tggtaccgtc cggaccttca ttgtatttac 4260 catcaagggg caccaggcca cgatgtggag cgttgttttg ctcttaagaa agaggttcag 4320 aaattgataa atagtaaaga gttaaccttc accgaccctg atgctgtagc tcagaacaat 4380 cctctgccta ctcatgggcc tgctgttaat atgattcaag acgatcagga agaggctcgc 4440 attctctctg taggtgatat caagactcct ctggtaccga tacatgtgaa aatgtgtaaa 4500 gcaactctct tcaaccacaa tcatgaagct tgtgacatat gtttgatgga tcctcgtgga 4560 tgtatacaag tccagaatga tatgcagggt ctcctaaata gaagggaact tgtggttaca 4620 agggaacccg agagcaagga cgtctgtgtt gtcactccgg tattcagagc caggaggcca 4680 ctggtgataa accctaacag tacaaagccc gttggtactc ccttggtaat ctgtgtgcct 4740 aggcccacgc ctactactgc tcagaaagct gtaccctata agtatgaagg cacgattctt 4800 gagcccggaa gtgagacaac ttcacctgtt gttgtggata atatcgcaga gaatagccgg 4860 attttgagga gtggccgcat ctttcctacg gtgggtccga agagtgttag tgttccggtc 4920 gatgagccag taaaagagcg aaacgccggt aaaggtaaag ctggggagca ggccaaagag 4980 tttgactttg aggatgccga tgaagtcttg aagctgatca agaagagtga atacagggtg 5040 gtggaccagc tgttacaaac tcctgcgaag atttccatca tggccctgtt atcaagttct 5100 ggtgctcatc gggatgccct gaggaaagta ctagaccagg catttgtgga ttatgatgta 5160 actctgggtc aattcgaaag cattgtgggg aatgtgaccg cgtgtaacag tctgactttc 5220 agtgatgaag atctcccggc ggaggggaat aagcataatc aagcattact catctctgta 5280 ctttgcagaa cagattcgtt atccaacgtc ttgatagata ccggctctgc acttaatgtg 5340 atgcccaagt caactctcga ccaattggcg tactccgagg ctcctttgag acttagcaag 5400 gtgacagtga gggccttcga tggaactagg agatcggtgt atggtgaggt agatttgcca 5460 atttcggtcg gcccacatga atttcaggtt actttccaag tcatggaaat ccaggcttct 5520 ttcagctgtt tgctcggcag accatggatt catgacgctg gggctgtgac atctactctc 5580 catcagaaat tgaagtttgt aagtcgtgga aagttgatca ctgtgagtgg cgagtcggcc 5640 tttttaatca gcaatttgtc tgctttctct gttatcggtg gtagtagttc ggacgggcca 5700 tcattccaag ggttctctgc cgaagaaagt gtcggtaaga tcgagacttg tatggcttcg 5760 ttgaaggatg cccggagagt aattcaggaa ggcaaaaccg gaggctgggg tcagctagtg 5820 gagttgccag aaaacaagcg taaagaggga attggtttcc ttaacagtaa gcctgggatg 5880 ttcgacccta ccagaggttc tttccacagt gctggtttca ttcatgattc gccagagacc 5940 aatgcaattt tagatgatgc acctggagga gtgacaccgg tctttgtgac gcctggagga 6000 gcttgctgca actggattgc tgttgacatt ccttctgtga caccccgctc taagtaatgt 6060 gtttgtcttg tcttttgttg tttttttgtt tttaagaaaa ctcctttcgt tctgcccaag 6120 gcgaaagtga aatcatgtag ggctttgttt tgcttctagt acttttatta caaataaaaa 6180 tcgtcgtttc tatcacggct tttattactt ttattttttt ttgttgcttt ttatggaaaa 6240 aatggtaata caaaaatcca aaaaaaaatc attctctttt tttttttttt ctcttttaaa 6300 tttcaaaacc aaaggtctgc atttactcat taaaatcaat catgaatcat gtgcagactg 6360 aacataagtg aatccgttga acacagtgac cccatgcttt ctcccaactt tgaggtcccg 6420 gtttacgagg ctgtggcaga ggaggatgaa gagatcccga atgagatcaa atggatgttg 6480 gaacaagaaa ggaagacaat tcaacctcat caggaggaga tagaaatcat caatctgggt 6540 actgaggaag acaagaaaga aatcaagatt ggggcattgt tggatgtatc tgtcaagaaa 6600 agagtaattg agcttatcag agaatatgtt gatatattcg catggtcata caaagacatg 6660 ccgggtctag accctgatgt cgttgaacac agactacctt tgaagcctga gtgtcctccg 6720 gtaaagcaga aattgagaag atctcatcct gatatggccc tcaagatcaa agaggaagtg 6780 cgaaagcaga ttgatgcagg tttcctagtc acatcagagt atcctcaatg gttggccaac 6840 atagtgcctg ttccaaagaa agatggcaaa gtcagaatgt gtgttgatta tcgggacttg 6900 aacaaggcta gtccgaagga taattttcct ttacctcaca ttgatgtatt ggttgataat 6960 actgctaagt gcaaggtttt ctccttcatg gacggtttct ccggctacaa tcagatcagg 7020 atggctcctg aggatagaga aaagacgtct ttcatcacgc cctggggtgc tttctgctat 7080 gtggtgatgc catttggttt gataaatgct ggtgccactt accaaagggg tatgaccaaa 7140 atctttcatg atatgattca caaagaaatt gaggtctacg tagatgatat gattgttaag 7200 tctggcacag aagaagaaca tgttgagtat ttgttgaaga tgtttcagcg gttgagaaag 7260 tacaagctcc ggttgaatcc taacaaatgt actttcggtg tcagatctgg taaactccta 7320 ggctttatcg tcagtcaaaa gggtattgaa gttgatcccg acaaggtcag agccatcaga 7380 gaaatgcctg ttccaaagac agagaagcaa gtcagaggtt ttcttggtag actcaattat 7440 atctccagat ttatctctca catgactgcc acatgtggac caattttcaa gttactccgc 7500 aaggatcaag gggtggagtg gaatgatgat tgtcagaagg cttttgatca aatcaaagaa 7560 tatctgttag aacctccaat tcttgttcct ccagttgacg gaagaccttt gatcatgtat 7620 ttaactgtac tggaagattc catgggctgt gttttgggtc aacaagatga aaccggaaag 7680 aaagagcacg ctatctacta tttgagtaag aagttcactg attgtgagtc ccgatattct 7740 gtacttgaga aaacttgttg tgctttaact tgggctgcca agcgtctccg tcattatatg 7800 attaatcata caacttggtt gatatccaag atggatccta tcaagtacat atttgagaag 7860 ccagctttaa ctggaaggat tgctcgctgg cagatgttat tgtccgagta tgatatcgag 7920 tatcgcactc agaaagcagt caaaggtagc atcttggcag aacatttggc tcatcaacca 7980 atcgaagact atcaatcaat caaattcgac ttcccagatg aagaggttat gtatctaaaa 8040 gcaaaagatt gtgacgaacc agtgttcggt gaaggtcctg atcctgaatc cgaatggggt 8100 ttgatatttg atggagctgt taatgtctat ggaagtggaa ttggtgcggt cctcattacc 8160 cctaagggta ctcacatccc ttttactgcg aggttacgtt ttgattgcac aaacaacatc 8220 gcagagtacg aagcttgcat catgggtatc gaggaagcca tcgatttgag gatcaagaaa 8280 attgtcattt atggagattc cgctcttgtg attaaccaga tcaaaggaga atgggaaact 8340 cgccatcctg gtttgattcc ctacagagat tatgcgagac gattgctgac tttcttcaac 8400 aaagtagagt tacatcatgt gccccgcgat gagaatcaaa tggcagatgc tttagctact 8460 ctatcctcaa tgatcaatgt gaatggtcac aatactgtgc cagtaatcaa tgtccaattt 8520 ctcgaccgac ctgcttatgt gtttgtagct gaagcaattg atgatgacaa gccatggtat 8580 catgatatcc aagttttcct tcaaactcaa aagtacccac ctggggcatc caacaaggac 8640 aagaaaacat tgagaagatt gtcaagccgt ttcttcctta acgaagacgt tttgtataaa 8700 aggaactttg atggggtcct acttagatgt gtggataagc atgaagcaga aaaattgatg 8760 tgcgagattc atgaaggctc tttcggaact cactcatgtg ggcacgccat ggcgaagaag 8820 atattgagag ctgggtacta ctggataaca atgcacgctg attgctacaa tcatgccaag 8880 agatgccaca aatgtcaaat ctatgctgac aagattcata taccaccatc tatgctcaat 8940 gtcatctctt ccccgtggcc cttctctatg tggggcattg acatgattgg tcggattgaa 9000 ccaaaggctt ccaatgggca tcgcttcata ttagtggcta tcgattattt caccaagtgg 9060 gttgaagcag catcttatgc caatgtgacc aagcaggtag tggtcagatt tatcaagaac 9120 aacctcatca gccgctacgg tgttcccaac agaatcatca cagacaatgg cacaaatctg 9180 aataacaaca tgatgaaaga gttgtgcgat gacttcaaga ttcaacatca caattcttct 9240 ccttacagac cacagatgaa tggggcagtt gaagctgcaa acaagaacat caagaagatc 9300 atacagaaga tggtagttac ttataaggac tggcatgaaa tgttacccta cgctttgtat 9360 ggataccgta cctcagtgcg aacctcgaca ggggcaaccc ctttctcttt ggtatatggt 9420 atggaggctg tactacctgt agaggttgag attccttctt taagagtctt gatggaagct 9480 gaattgtctg aagctgaatg gtgccagagc aggtacgacc agttgaattt gattgaggaa 9540 aaacgtatgg ctgctttgtg tcatggacag ttatatcagt caaggatgaa acaagcattt 9600 gataaaggag tccatccccg cgaattcaag gaaggagatc ttgtgctcaa atgtatcaaa 9660 tcctttcaac cagatcctag gggcaaatgg acgccaaact atgaaggtcc ctatgtggtg 9720 aagagagctt tctctggtgg tgctttaatt cttacaaata tggatggaga ggagttacct 9780 cgtcctgtga attctgatgc agtcaagaaa tactttgtct aaatatataa aagaacagct 9840 cggtaggtcg aaaacctgaa agggcggctt aaaccaaaaa tgagcgtctc ggtggatcga 9900 aaacccgaaa gggcggtcca ggcaaaaatt agagacagaa aaaaaaaaaa aaaaaaagaa 9960 gggaaattat cctgatagat cgaaaacccg caagggcgat ctatgcaaaa attaaggatc 10020 gagacaagta actgcatcag atgaaacatc actcgcccga gacaccttga ctgtcagaag 10080 ttctctaatg ttgaagcatc caaactgtgg aattcaaagt ggttaagaag tatagcggtc 10140 attgtgttca atgtacctat cccatataat taccatattc caactctttg taatctgtgg 10200 tgccatgcct ttagccggtc accatttcta ttaaatcaat ttgagcatgt gcccctttgt 10260 tggaattctt gtttattcta tgtgcaaaaa aatctttctt tcgtttttag tattagtatt 10320 tgaaacaaaa ttttgaaaaa aacttttcta aagattttat gttttctttc taaaaaaaaa 10380 aaaaaaaaaa aaaaaaaaaa aaaacaacaa aaaaaatgac aaacatatta tctttaaaaa 10440 catgtatcac ataagtatgt gtcaacagtt ggtccgaaac aagcaggttc aacaaagaag 10500 aaatagtcat tgcaaaaaaa aagagcgccc tggtggatcg aaaacccgaa agggcgatct 10560 aggtaaaaat taggggcata caaaaagaga aaaagaaaaa tgtctccccg gtggattgaa 10620 aatccgaaag gacgatccag gcaaaagtta gggatttcaa atataaatac aaaaagcaat 10680 gactattcag acaagacagt acggtgttgc attgatgaaa tggcgacttc taccacagtt 10740 tgtgaagact tacctcagca gtatgtttaa gggctgtacc ctaacaatgt ttgattcatt 10800 ccccgtgact ttatccccat tgaaggcttt gagtgttcgt acagtgatgc cgggccattc 10860 tcctcgtaga cctgcccagt cctgtctcaa caatcttacc attacaccat catatgagtc 10920 tcatacatat tcattcattc atgcatacat agcacgcata taaacaccat ccatacatag 10980 tttctttttt tacccaatat tttgcttcat tatcctcaaa atgggtctaa actcaggtat 11040 gttataaaac caatcgtgtt tcaaagtggc aggtctcgcc agtaaccagt ctatacagtt 11100 gccccatcgt cttcagacaa tttcattttt cccctcaggt gtatctttgt caagttaatc 11160 cccactcata tcaagcttta caatgtcttt actttagcca ctcgtcggcc catcatgtct 11220 ttactttcgc cactcgtcgg ccaatcatgt ctttaatttc gccactcgtc ggcccatcat 11280 gtctttaatt tcgccactca tcggcccgtc atgtctttac tttagccact cgtcggcccg 11340 tcttgtcttt actttagcca ctcgtcggcc cgtcatgtct ttactttagc cgctcgtcgg 11400 cctgtcttgt ctttacctta gccactcgtc ggcccgtcat gtctttacgt tcgccactcg 11460 tcggccaatc atgtctttac tttcgccact cgtcagcaat caatcatgtc tttactttcg 11520 ccactcgtcg gccaatcatg tctttacttt cgccactcgt cggcaatcaa tcatgtcttt 11580 actttcgcca ctcgtcggca attaatcatg tctttacatt cgccactcgt cggcaatcaa 11640 tcatgtcttt actttcgcca ctcgtcggcc aatcatgtct ttactttcgc cactcgtcgg 11700 caatcaatca tgtctttact ttcgccactc gtcggcaatt aatcatgtct ttacattcgc 11760 cactcgtcgg caatcaatca tgtctttact ttcgccactc gtcggccaat catgtcttta 11820 ctttcgcctt gaaacattgt catttatact tacctatcat ttctttcccc agtgatacct 11880 atccatttgg ctcccagtca gcctctgcat catcgttacc ttcatactta catcatattc 11940 agtcgtatta tcacattcat cagcattaca tctctggcgt ttcaaatggt ccaaaattgg 12000 cgtttttata tatttaagtc tctccgaccc tttggtttaa aaagttctct tttaaaacct 12060 ttgtgacgaa gaaacttaaa taggggcatc t 12091 // ID EGLN1_SM repbase; DNA; DCOT; 405 BP. XX AC AB016142; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Solanum melongena LINE retrotransposon EGLN1_SM, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; endonuclease; KW LINE; long interspersed nuclear element; EGLN1_SM. XX OS Solanum melongena OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum. XX RN [1] RP 1-405 RA Noma K., Ohtsubo E., Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016142; Positions 1 405. XX SQ Sequence 405 BP; 162 A; 53 C; 76 G; 114 T; 0 other; ctggaatgca agaggtctaa ataagatata taaataaaag aaacttaaag ttgtagtttg 60 ataaagtaag ccttgttggg attatagaaa ctagagttaa ggagtacaac agaaagaata 120 taataagagc aataacactt agatgggaga tacttcataa ctatgattca gcactcaatg 180 gtagattatg ccttatatag gatgggaatg aatataaggt ggcaaaaata aaaaataccc 240 acagttacta tactgtttga tcactgatag agttaaagat caataacaat tacttactat 300 tatatatgaa ttcaacatta ttgagctgtg tataaatttg tagcgggaac tgaatgaact 360 aacacacaaa attgatcaac cttggctcgt cctcggggac ttcaa 405 // ID U_LTR_MT repbase; DNA; DCOT; 2966 BP. XX AC . XX DT 13-JUN-2006 (Rel. 11.06, Created) DT 13-JUN-2006 (Rel. 11.06, Last updated, Version 1) XX DE Putative long terminal repeat from Medicago truncatula - DE consensus. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; KW U_LTR_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-2966 RA Jurka J.; RT "U_LTR_MT: Putative long terminal repeat from an unclassified RT retroelement present in barrel medic genome."; RL Repbase Reports 6(6), 359-359 (2006). XX DR [1] (Consensus) XX CC The consensus is on average ~89% identical to individual CC sequences. Many incomplete copies are present in the genome. Open CC to re-classification pending data. XX SQ Sequence 2966 BP; 1155 A; 683 C; 325 G; 797 T; 6 other; tgtaacgccc tatttctatt aaagtgataa aacacgcgaa taatataaat attcaagaaa 60 tagacgccac gtcatcaaca aaaaccaaat caacatgcat atataaaaat tctcaacagt 120 cgcagcggat ataaaccata cacctcaaaa gtatacatgt catgatatca aaatacatca 180 tcataaaaat tctccaaatc ccgacaaatg ggtaaatctc cacaacataa ataaatccag 240 aataaacaat ctagaataat cataagacag acatcctaga tcagagccta ccctaagact 300 ctaaggaaac gataacggag atagctcccg atatccaagc aactcaccaa aagcaactaa 360 tcctgcactt cgtctaccca tccatacaga caggtaggtg gtcaaaacca ctaggggggt 420 aagctttaca tcaatcataa tcaacataaa caatttgaac ataaatgaat caaatcaagt 480 atcaattaat taaacataag caattaattt ccatatacac attcatrcaa caattccaaa 540 tatcacaatt aagcattcat caaacacact tatcatcaac attcatcatt cacatgcaac 600 aaataagact catgccaata tgatatgcgc ctaatcccaa cacatatatg catgtggtac 660 caaataacat caaggtcgtc acccatgatg caacaaaaac atcatatgta agatttcaca 720 cccgtcttac attatcaccg atgtaaaaga gtacacctcc ttttacaatt ctcatcaaga 780 ctcaacatga ctatgatgca tggacataca agcaaagact cgayaatgca aaatcacctc 840 ataaatatat caacaacaat rtaaaggwtm acctccaatt atattgatca acctcaacaa 900 caattgcatt atcaagtatt tacgtccaca caatcaatca agtcataatt caattaagag 960 tcatcaycaa attatcatca taatatatca acatcaattg atatatatac attaatcaac 1020 atcaactata taatatagtt caaccactcc aaatatttct cacattccaa gtaaagagaa 1080 aatacaacac cttatgataa acatcatatt caacacctaa caattcattc acatatcttc 1140 atttaatcat ataaagctag tcacgaaaga tttataaggt aattggcttt aaagaatcgt 1200 tttcgacaaa gtccgtatca agtggcaaaa cggccaacat tgataatttt caaaacaagg 1260 taacttattc aagtttgaaa actcacaaat caatcttaat caatcatgta gtcatgagct 1320 taagccactt acgaactatt aaacattagt tcaaagatta gcctaagttc gtatgagaaa 1380 accccaagtt cacatattcc acaatcccac ccgaaaatca agtttgacat gattaagaca 1440 tttaaccaac tttacaagcc ttgcctaagt ccacatggac tgtagaccaa acttgtaatc 1500 ccttttagtt cacaaaagtt catttccgac aaaatccgaa attatcaaaa gttcaagttt 1560 caacccaatt agaaaatccc aagtttgaat gagtaaatca tgttccagta ggtttaggag 1620 tacaaacaga gattaaacaa gttgaaagaa gtgttttaca aagctcggat tggcccccta 1680 aagcccggaa cgaaaatcaa aagttgctga aactgggctt gttcgcttaa gcgaccaggt 1740 tccataagct tacagtagct gttcgcttgc tgttcgctta ccggttcgct taagcgaccg 1800 agttccagaa cctactgtga ttgttcgctt acgcgttcgc ttaagcgaac agtcatcagt 1860 tctgcagaaa aactttcggg tttcaaccct ttttcaccca aaattcccaa ttttgatctc 1920 ccaatgccca aatatgtttc caaagtttgt ttacaggtct tagcacttaa aagggctctc 1980 aagaacacat caaacatgaa aacaaatgtc atttaaacat aattcaccaa atcaacccat 2040 tttcacaaaa ccaacaacaa caacttattt cacatcacaa actcatgatt tatgaacacc 2100 caagctatga atcatcaaca acaatatctc ttaacaacaa caacatcaat taaacatgat 2160 tctcatcaca aatcaacaac aacatagcac aattcaacaa ttagagcaca attcacaata 2220 tatcattttc acatactatg aacatgcaat ttcaccaaca acaattcaat tatcaccaat 2280 ttcatgtact caaacatatc atcataacaa gagcacgaat ttcaacaact aagagcaaaa 2340 taatcactta ttcaattaag cacttaagca tacaattagg gaaaaattac aactaagtga 2400 ttatgattga aatctaaccc ccttacctca ataagcaata atcctagcaa aagcttcaat 2460 ttagctccta gaatctctat cacctcttgg gtcttcaagc tttctccctt ctaacccttt 2520 tcctcttctc ttgaactttc tctctctacc tctctcaaaa ttcttatgaa atgaaatgaa 2580 aacctatttt tctctaaaga caagagttta tataggctcc tctcaaatgg gcttaaccct 2640 aatgccttag tgggcttaac tcactcattc actaattcta aaatgtttct actcacttaa 2700 cggtaaaata ataacaacga tcacttaccg gctcacaact aattaccaca ctagtaactt 2760 agtaaaataa tggttctcac ttgaaacact aaaaataatc ctcaccatga atttactaaa 2820 ttacccttac tcacaaaatg actaaattac ccttctaaca cgaaaaccca taaaaatgca 2880 cccaatgata aataatcaca cacaagcaca tataaacaca tattaaaaca attaaaaata 2940 attctagcga aaatcgggct gttaca 2966 // ID Ogre-PT1_I repbase; DNA; DCOT; 13364 BP. XX AC AC149300; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 13-APR-2007 (Rel. 12.03, Last updated, Version 2) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-PT1; Ogre-PT1_I. XX OS Populus trichocarpa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus. XX RN [1] RP 1-13364 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC149300; Positions 17121 3758. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations:.6202..6439: putative intron. CC Note: ORF2+3 (gag-pol) is disrupted by two mutations generating CC stop codons at 7596..7598 and 8922..8924. XX FH Key Location/Qualifiers FT CDS 574..2550 FT /product="Ogre-PT1_ORF1" FT /translation="MAVNREVTTVEYGLESESLHMTEGDCPRLDDSGIPLL FT KDVRCVINDAIRLLPLTKYLADETEFTKIYGRILHLLNVPVLPLAIKALIH FT FWDPDYRCFTFRDVDMVPTLEEYGVLTEFPEDIHKVYFHQRIEDTIEELAK FT LLGIQQMSLYREKSDSGGLRWKRLEELLITKKSNPCAKLEVYRILALGIFG FT LILCPSTAGIISVEAANLFVEYEKTKINPSAAILAETFLSLNHCKKSGKGF FT MRCCVPLLFIWMVSHIESETPIFRNFWWFDQRPLELFVSNEWNFFSEDDWR FT VKLQGIPRSNFNWRAPWMRNVTYLMGCGKKPWVPLIGVTGYISYAPALVAR FT QFGGIQSIPRTVDLAQFIGVYKGATMEMLESIRQDWKSLVLVKKETGLRNP FT TVSEKYPEWRNGGVSYMAEVSESVGIRRKRVNCEEELRKQVKSLQAELKAK FT EEQRVSLERQLAKEKGVRKIAEEERDSVGQDLIKAKADLETQKIINQDMTY FT YMAKAKHWEELAIKTQAILKMRRADIVKFKDQLGKAEALTKIQEERKTELN FT SHKAEAEALRSKLDKEKLKTVQLIGNQKMLKQHNQTLDDANNFLSRNNLIH FT TERIRELQDQIDRAAAEAHLLRVEARQVGGDIMKYRRSTDNTDLFLKAIAT FT RGSVFSPVID" FT CDS join(2843..6202,6441..7595,7599..8921,8925..9584) FT /product="Ogre-PT1_ORF2+3" FT /translation="NIGPQPKRIHNTRSRKKMENEERNQLEIQHQRELESL FT KEDVARLTSLLEQALRPRAGEGTSSQQTFTPQPPPPFIPPSEPQHAAHFVP FT TQSAHPMRVPHSVLIEEEPQRNKIIEENGHEKLAALEERMKAIEGNSLYDP FT VKAVEMCLVPNVVIPRKFRVPEFVKYTGTQCPITHLKAYCNKMAEVVYDEK FT LLIHFFQDSLSDAALAWYMRLDNTKIKGWKDLVKAFIRQYKFNMDIAPDRS FT SLQAMEKGNKESVREYAQRWRESAAQVNPPLSEREMTGLFSNTFKAPYFEY FT LVGSAAQNFSDLVVIAERIEQAVRTGRIVDPTEKRGFIGKRKETEVHNVER FT ESRGKNTYQDIYSFKSITPTPSISNIKFSSPTNTQNNPISNQTNNAYRPRR FT NFPIDQVQLPPLPMSLTEMHQRLLGIGQVAPVPLEPLQPPFPFWYKPDQKC FT EYHAGAVGHHIDGCVAFKRKILQLIKAGWISFDESPNVNSNPLPNHASGGG FT GVNSLEIGRGSTTTLRVTMDRLYGMLRQTDYLKTPVKIQAVRSANEYCKYH FT QQLGHDIDSCEEFHLEVENIMTLGMLRLMKLKEDELVGTMTGCNQKVEVCR FT YIPTEKGPPRMILAKPMNTVSGSYNAQPYNYGYSFHSTNPAPVFHAEIGGL FT TRSGRCFTPEELENHRKAKGKDMVELTKTDEVNKPVSDEEANEFLKLMKHS FT EYSVVDQLKKTPARISLLSLMLSSELHRNALQKVLNEAYVPQDITQDSIEH FT LVGRIQATNYLYFTDDELDHEGTGHNKPLHITVKCKDCVIAKVLIDNGSAL FT NVLPRHVLDKMPVDASHMKPSTMTARAYDGSPRPIIGSIDVELIIGPQPFQ FT VTLQVMDIHPSYSILLGRPWIHAARAVASSLHQRVKFIINGNLVTVRAEET FT LSMIKNVSIPYIETEESKDGNLHAFEVVNAEWVPENTVRRKPEISEAAKMA FT AKYFLKHELPFQYDHTTGMPERVNVIKMKCADQRFGLGFKPGKADFKRAAE FT IRRKKRIARIERREPDEDRIEIPPIHVTFPRSAYVIKTEDYEGGLRKEFNS FT VTINYLEKVGEQDLKEEDSTHEQLPQLTIGVLEDGSSEFVRKLAEGEDLAN FT WEIHEVPIVFKKKSESGSSYTSQTHCTVDNWLNFDETIIAMDEEEFGEEDI FT HEFTRLGEQSDRTWKPAKEELELIDMGTEHNKRELKIGKLISAGVRSELVA FT LLREYVDVFAWSYADMPGLDTDIVVHKLPLIEGCKPIKQKLRRTRPDILIK FT VKEEITKQWDAGFLEVVDYSQWVSNIVVVPKKDNKIRVCVDFRDLNRASPK FT DNFPLPHIDVLVDNAAKSSTYSFMDGFSGYNQIKMAEQDKKKTTFVTPWGT FT YCYRVMPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKDEGNHI FT PALKKLFERLRKYQLKLNPAKCTFGVKSGKLLGFVVSNNGIEVDPDKVKAI FT QAMSAPKTEKEVRSFLGRLNYIARFISQLTVTCEPIFRLLKKNPGVWDEDC FT QEAFDKIKQYLQKPPLLVPPVPRKPLILYLTVTESAMGYVLGQHDESGRKE FT QAIYYLSKKFTECESRYSMIEKLCCGLVWSAKRLRQYMLYYTTWLISKIDP FT LKYIFEKPYMSNRLARWQVLLAEYDIIYKTRKSVKGSAIADHLADNAVEDY FT EPLNFDFPDEDVLVIESDWWTMYFDGAVNVSGNGAGAVIISPEGKQYPISI FT KLQFSCTNNTAEYEACIHGLEAALELKIRKLGVYGDSMLIICQTKGEWQTK FT DEKLKPYQEYLSKLAENFKEIEFNHLGRDKNQFADALATLASMATIDCGIR FT VHPIGIDIRSSPTHCCLVEEEVDGSPWYTDIKRFIQYREYPSEVSKTDKKT FT LRRMVMEYFIDGEILYKRSFDGTLLRCLDRSEANKALCEVHEGICTTHANG FT HMMARQIQRAGYFWLTMEKDCIFVRKCHKCQVYSDKINAPPVPLFNMVSPW FT PFAMWGIDVIGPINPKASNGHRFILVAIDYFTKWVEACSYAHVTQKVVKRF FT IERDLICRYGLPERIVTDNAKNFNGKMIVELCTKWKIKHSNSSPYRPKMNG FT AVEAANKNIKKIVQKMVVTYKDWQEWLPYALHAYRTAIRTSTGATPYSLVY FT GMEAVMPLEVEIPSLRVLMESELEEAKWAEKGQIRYDQ" XX SQ Sequence 13364 BP; 4459 A; 2376 C; 2821 G; 3708 T; 0 other; gaatggcgac tccactgggg acctaagact aagctttgtc tttatttgtt aaaattgcta 60 caaatgcttg ttgtgttgtt tggttttttt ttttattatt attattttat tattttattt 120 tatttattgt tacagcttta gcatccatat ttattcatgt catcatacat atatcggata 180 tggatttatg ccttcacaca ccacgcattt cataataaat atctgctata tcgactttat 240 gttaagtggg agagtagcgg taccccaatg gctttagcct gggtaagact cgtgaaacca 300 tccaactttc gcttgattgt ttactcgata gtggttggta tgcctaaact gatatcattc 360 agggcctcta tcttcacgct acttgtaagc ctcacatcaa cctttcgagg aagatcactg 420 agcatgcgag agacctttca aagactagtt agcaacctac cctgagcatt taatgactag 480 aacttaccct ttaggttgtt ccctatgtaa gtttcactaa ggcaagctta acatatatca 540 ttttcattac aggattattt tttgggtgac ataatggcag ttaatcgaga agtcaccact 600 gttgagtatg ggcttgaatc tgaatcattg catatgactg agggagactg ccctagactg 660 gatgacagtg ggataccgct gctaaaagat gtgagatgtg taataaatga tgccattcgt 720 ttgcttccac tcaccaaata cttggctgat gagacagaat ttactaagat atatgggaga 780 attttgcatc ttctaaatgt tccagtactg ccattagcca taaaagccct gattcatttc 840 tgggatccgg attatcgatg ttttacattt agggatgtcg atatggttcc tacccttgaa 900 gaatacggtg ttttgacaga atttcctgag gatatacata aggtgtactt tcatcaaagg 960 attgaggata ctatagagga gcttgctaag ctattgggaa tccagcaaat gagcttatat 1020 agagagaaaa gtgattctgg gggtttgaga tggaaacgac tagaggagtt gttgattact 1080 aaaaagtcta atccatgtgc taaattagag gtatacagaa tattggcttt gggaatattt 1140 gggttgattt tgtgtccttc aactgctgga attatcagtg tagaggcggc caatttgttt 1200 gttgagtatg agaagaccaa aattaatcct tctgctgcga tcttggctga aacttttttg 1260 tccctcaatc attgcaaaaa gtccgggaaa ggttttatga gatgttgtgt tccattattg 1320 ttcatttgga tggtaagtca catagaatcc gagacaccaa tattccggaa tttttggtgg 1380 tttgatcaaa ggccactcga gttatttgta tcaaatgaat ggaatttttt ttctgaagat 1440 gactggaggg taaaactaca aggaattcca cgaagcaatt ttaattggag agctccttgg 1500 atgagaaatg taacgtattt aatgggttgt gggaagaagc cttgggtacc tttgattgga 1560 gtgactggat atattagcta tgcgcctgct ttagttgcaa gacagtttgg gggcatacaa 1620 agcatcccaa gaacggttga tttagctcaa tttattggag tatacaaagg agctaccatg 1680 gagatgttgg agagcattag gcaggattgg aaatctttgg tactggtgaa aaaggagacc 1740 ggattaagga atcctacagt tagtgaaaag tatcccgaat ggcgtaatgg aggagtctct 1800 tatatggcag aagtttctga atctgtgggc attcgaagga aaagagtaaa ctgtgaagaa 1860 gaattaagaa aacaagtaaa atcgttacaa gctgagctta aagcaaagga agaacagaga 1920 gtgtctttag agcggcagct agccaaagaa aagggtgtaa ggaaaatagc tgaagaagaa 1980 agggactctg tgggtcaaga cttgataaag gcaaaggctg acttggaaac acaaaaaata 2040 attaatcagg acatgacgta ttatatggca aaagctaagc attgggaaga gttagctatc 2100 aagacacaag ctatattgaa aatgcgtcgg gcggacattg ttaagtttaa agaccaattg 2160 ggaaaagctg aggctttaac taaaattcag gaagagcgaa aaacagagtt gaacagtcat 2220 aaggctgaag cagaagcatt gagatctaag ctggacaaag aaaaattaaa gaccgtacaa 2280 cttataggaa accaaaaaat gttaaagcaa cataatcaaa cattggatga tgccaataac 2340 tttttgtcta gaaacaactt gattcatact gagaggataa gggaactaca agatcagatt 2400 gatcgagcag ctgcagaagc ccatttatta cgagtggaag ctcgtcaagt gggaggagat 2460 ataatgaaat atcgaagaag tacggataat accgatcttt ttttaaaagc aatagctact 2520 agaggcagtg ttttttctcc tgtaatagat tagattaatt tttcattgta agcttctgaa 2580 tgagtaataa aagggtttga gacccacatt tttcaatgca aaaatatatg tatatgacgg 2640 aaagcccaaa tgtcaaaaag ctaagcagat ctcttctcgg catcacaaca atgatatcaa 2700 gttcaagctc aacccacata tctaaagaat gacggccata tgtcaccaac aaagagcaaa 2760 tctatatcca atatgttgca ttcacattca tgcatctcat acatttgctt atagattgtc 2820 atattctgca tataacaggt gaaatatagg tccccaaccg aaacgtatcc ataacactcg 2880 ttcacggaag aaaatggaaa atgaagagag aaatcagtta gaaattcaac accaaagaga 2940 gttggaaagc ctgaaagagg atgtagcaag gcttaccagc ctgcttgaac aggctttgag 3000 gcctagagct ggagaaggga catcttctca acaaacattt acacctcagc ctccgcctcc 3060 atttattccg ccatctgaac ctcagcatgc tgctcatttc gtacctactc aatcagcaca 3120 tccaatgagg gtcccccatt ctgtgttgat agaggaagaa cctcaaagga acaagataat 3180 agaggaaaat ggtcatgaaa aactagctgc tttagaagaa agaatgaagg caatagaagg 3240 gaatagtttg tatgatccgg tgaaggccgt tgaaatgtgt ctagtgccta acgtggttat 3300 tcccagaaaa ttcagagttc cagaatttgt taaatatact ggaactcaat gcccaatcac 3360 ccatcttaaa gcatattgta ataagatggc tgaagtagtc tatgatgaga agttattgat 3420 ccattttttt caagacagtt taagtgatgc ggctcttgct tggtatatgc gtttggataa 3480 taccaagatt aaaggatgga aggatttggt taaagctttt attagacagt ataagttcaa 3540 catggatatt gccccagata gatcaagtct gcaagccatg gaaaaaggca ataaggagtc 3600 tgtaagagaa tatgcacaaa ggtggcgcga atcagccgcg caagtaaatc ctccattgtc 3660 ggaaagggag atgactggtt tattttccaa cactttcaaa gccccgtact ttgaatactt 3720 ggtaggtagt gctgcacaaa atttctctga tttggttgtc atagctgaaa ggatcgaaca 3780 agctgttcgg acgggtagga tcgtggatcc tactgaaaaa agaggtttta ttggaaaaag 3840 gaaagaaacg gaagttcaca atgttgaaag ggaaagtaga gggaagaaca cttaccaaga 3900 catttacagc ttcaaaagta ttacacctac cccctctata tccaatataa aattctcttc 3960 acctacaaac acccaaaata acccgataag caaccaaacc aataatgcct accgcccaag 4020 aagaaatttt ccaatagatc aagtgcaact tccaccatta cccatgtctc ttactgaaat 4080 gcaccaaaga ttgcttggta ttggccaggt agcacctgtt cccttagaac ctttacaacc 4140 accatttcct ttttggtata aacccgatca aaaatgtgaa taccatgctg gtgctgttgg 4200 tcatcatatt gatggatgtg tcgcattcaa aagaaaaatc cttcagctca tcaaagctgg 4260 gtggatttct tttgatgaat ctccaaatgt gaattctaac cctctaccaa atcatgcttc 4320 tggaggtggg ggagttaata gcttggagat aggaagggga agtacaacaa ctttaagggt 4380 gactatggat agattgtatg ggatgttgag gcaaacagat tatctaaaga caccagtcaa 4440 aatacaagct gtaaggagtg cgaatgaata ttgtaaatat catcagcagc ttgggcatga 4500 tattgactcg tgcgaggagt ttcatttgga ggtagaaaat ataatgacgt tgggaatgtt 4560 aagattgatg aaactcaaag aagatgagtt agtaggaaca atgactggtt gtaaccagaa 4620 agtggaagtt tgtagatata taccaaccga aaagggtcca ccaagaatga tcctagccaa 4680 gcctatgaat actgttagcg gaagctataa tgcccaaccc tataattatg gttattcctt 4740 tcacagcaca aatcctgccc ctgttttcca tgctgaaata ggaggactca ctcggagtgg 4800 gagatgtttt actcctgaag agttggaaaa ccatagaaaa gccaaaggaa aggatatggt 4860 ggaattgaca aagacagatg aggttaacaa gccagtaagt gatgaagagg ctaatgaatt 4920 cctgaaattg atgaagcata gcgaatatag tgtggttgat cagctaaaga aaacacccgc 4980 taggatttct ttgttgtcat taatgttgag ttcagaattg cataggaacg cacttcagaa 5040 ggttcttaat gaagcatatg ttcctcagga tatcacacaa gactccatag aacatttggt 5100 gggtaggata caagccacca attacctcta ttttaccgat gatgagctgg atcatgaagg 5160 gaccggtcat aataaaccat tgcatatcac ggtaaaatgc aaggattgtg tgattgctaa 5220 ggtgcttata gataatggtt ctgctctcaa tgtattgccg agacatgtac ttgataaaat 5280 gccagttgat gcctctcaca tgaagccaag taccatgact gctagggcat atgatgggtc 5340 acctagacca atcattggga gtattgatgt tgaactaatc attggcccac aaccattcca 5400 agtcacatta caagtaatgg acattcatcc atcatatagc attttactgg ggagaccttg 5460 gatccatgca gcccgagctg tcgcatcttc tttacatcaa cgggtcaagt ttatcatcaa 5520 tgggaatttg gtgactgtga gagctgagga aactttgtca atgataaaaa atgtgtcgat 5580 cccttacata gaaactgaag aaagtaagga tggaaatctg catgcattcg aagttgtaaa 5640 tgctgaatgg gtaccagaaa atacggtacg aagaaagcca gaaatttccg aagcagcaaa 5700 aatggctgct aaatacttct taaagcatga actgccattt caatatgacc acactaccgg 5760 aatgcctgag agggttaatg tgataaaaat gaagtgtgcg gatcaaaggt ttggcttagg 5820 gtttaagcct gggaaagcag atttcaaaag agcagctgaa attagaagaa aaaaaagaat 5880 agcccggatt gaaaggagag aaccagatga agatcgaata gagatcccac caatccatgt 5940 aacatttcca agatccgcat atgtgataaa aactgaggat tatgaggggg gactaagaaa 6000 agaattcaat agtgttacta ttaattatct tgaaaaagtt ggtgaacaag atttaaagga 6060 agaggatagt actcatgaac aattgcccca gctgactatt ggcgttttgg aagatggctc 6120 atcagaattc gtgagaaaac tggctgaggg agaagattta gcaaattggg aaattcatga 6180 agtcccaatt gttttcaaaa agtaatgttt gtttgcttgt tcgttgtttt cattatttgt 6240 attgtttgaa taattgtgcc ttgccaaatc atcatgcttc aagagattgg caataaggtt 6300 ttgtggttga gcccttctat cctttaaatt tcaatgagat catgcaaatt ttctttcaat 6360 cgtgtttttc tttttctctg ttcatttatt tactttccca taaccataca ctcacaatcg 6420 aaacactttc cgctttcagg aaatctgaaa gcggatcgtc gtatacctca caaactcatt 6480 gcactgtgga taattggctt aactttgatg aaactataat tgccatggat gaagaagagt 6540 ttggggagga agatatccat gagttcacaa ggttagggga acaatctgat cgcacatgga 6600 agcctgcaaa agaagaacta gaactgatag atatgggcac cgaacataat aaaagagagt 6660 tgaaaatagg gaagctaatc tctgctggcg taagaagtga attggtcgct cttttacgag 6720 aatatgttga tgtgtttgcc tggtcatacg ctgatatgcc tggtctggat actgatattg 6780 tggtacataa actacctttg atagaaggat gtaagccgat taagcaaaag ttgaggagga 6840 caaggccaga tatactaatc aaagtgaagg aggagataac aaaacagtgg gatgctggat 6900 tcttggaagt agttgattat tctcaatggg tgtccaatat tgtagtagta cccaagaaag 6960 acaacaaaat cagggtatgt gtggattttc gagatttgaa tagggcaagc ccgaaggata 7020 attttccttt accccacata gatgtactgg tggataatgc tgctaagagt tctacttact 7080 cttttatgga tggtttctct gggtataatc agattaaaat ggccgagcaa gacaagaaga 7140 aaacaacatt tgttaccccg tggggaacgt attgctatag agttatgcca ttcggactca 7200 aaaatgctgg agcaacttat caaagagcaa tggtgacact atttcatgat atgatgcata 7260 aagaaattga agtctatgtg gatgatatga tcgctaagtc taaagatgag ggaaaccata 7320 tcccagctct aaagaaatta tttgaaaggc tgagaaaata tcaattaaag ttgaaccctg 7380 caaaatgcac atttggagtg aagtctggga agttattggg attcgtggta agcaataatg 7440 gtatagaggt agaccctgat aaagtgaagg ccatacaagc tatgtcagct cctaagactg 7500 agaaagaagt tcgaagcttt ttggggcgtt taaattacat tgctcgattt atttcacaac 7560 ttacagtcac ttgtgaacca atctttcgat tactttgaaa gaaaaaccct ggagtatggg 7620 atgaagactg tcaagaagcc tttgataaga tcaaacaata tctgcagaaa ccacctctat 7680 tggtgccacc tgtgcctagg aagcctctca ttttgtattt aacagtgact gaatcagcaa 7740 tgggctatgt gcttggccaa catgatgagt ctgggagaaa ggagcaagcc atctactacc 7800 ttagtaagaa attcactgag tgtgaatctc gttacagtat gattgagaag ctgtgttgtg 7860 gtttggtatg gagtgcaaaa aggctccgac agtatatgtt atactatacc acttggttaa 7920 tttcaaagat agatcctcta aaatatattt ttgaaaaacc atacatgtca aataggctgg 7980 ccagatggca agtgttgttg gctgaatacg atatcatcta caaaacaaga aaatctgtga 8040 aaggaagtgc aatcgcagat catttagctg ataacgccgt tgaagactat gagccgttaa 8100 attttgactt ccctgatgaa gatgtgctgg taatagaaag tgattggtgg accatgtact 8160 ttgatggtgc ggtgaatgtg tctggtaatg gagctggtgc tgtaataatt tctccagaag 8220 gaaaacaata tcccatttcc attaagctac agtttagttg cacaaacaac acagctgaat 8280 atgaggcttg cattcatgga ttagaagctg cattggaact gaagataagg aaattagggg 8340 tatatggaga ctctatgttg ataatttgcc agacgaaggg ggaatggcag acgaaagatg 8400 agaaattgaa accatatcaa gaatatctct ccaaattggc tgaaaacttt aaagagatag 8460 agttcaatca tttaggaagg gataagaatc agtttgcgga tgccttagca accttggcct 8520 ccatggccac aatcgattgt ggtatcagag tacatcctat aggcattgat atcagaagtt 8580 ctcctactca ttgttgttta gtagaagaag aagtagatgg cagtccttgg tatacagata 8640 taaaaagatt catccaatat cgagaatatc cttctgaagt ttcaaaaaca gataagaaga 8700 ctctgagaag aatggtaatg gagtacttta tagatggaga aatcttatac aaaaggtcat 8760 ttgatgggac tttattaaga tgtctggaca gatcagaagc caataaagcc ttgtgtgaag 8820 tgcatgaagg aatttgcacc acccatgcaa atgggcatat gatggcaaga caaatacaaa 8880 gagctgggta tttttggttg accatggaaa aggattgtat ataatttgtc cgaaaatgtc 8940 ataaatgtca ggtgtatagt gacaaaatca atgcaccccc agtgccctta ttcaatatgg 9000 tgtcaccttg gccattcgcg atgtggggaa ttgatgtgat tgggcctatt aatccaaaag 9060 ccagcaatgg tcatcggttt atcttggtcg caattgatta ttttacaaag tgggtagagg 9120 cctgctcata tgctcatgtg actcagaagg tggtcaagcg attcattgag agagatctaa 9180 tttgtaggta tggtttgcca gaaaggatag taaccgataa cgccaagaac ttcaatggga 9240 agatgatcgt ggaattatgc actaaatgga aaatcaagca ttccaattca tccccttaca 9300 gaccaaaaat gaatggtgct gttgaagctg ctaacaagaa cataaagaag attgtccaga 9360 aaatggtggt cacatataaa gattggcagg aatggcttcc ttatgctcta catgcctatc 9420 gaacagcaat aaggacgtca acgggggcta caccttattc attagtttac ggaatggagg 9480 cagtgatgcc cttggaagta gagattcctt ctctaagggt cctcatggaa tctgagctag 9540 aagaggctaa atgggctgag aaggggcaga tccgatacga ccagtgagaa gagattagct 9600 gcaatttgtc accaccaact gtatcaaaac aggatagcaa gagcatatga cagaaaagtt 9660 cgaccaagag agtttaaaga aggagatctt gtattgagaa aaatcctatt actacctagt 9720 gagaatcata gcaagtgggc acccaattat gaaggtccct atgtagtaaa gaaggcattc 9780 tctggaggag cattgatatt gacaggaatg gatggagaag atttgagtag gccagtgaat 9840 tccgatgccg tgaagaaata ttatccatga ttgtataagt tctcatcaaa tcaataaaag 9900 ttttgccaag aaattcactt tgcatatctt ttctatctct cataaatgtt tattgatatc 9960 aaagaatcag taaatacact cttgaagcct tgcatgatct catagattca attcattact 10020 tttaccaaaa tcagtttccc tatttgagtt tcaaaaaatt tgatctggca ttttgatttc 10080 aaaaataatt tgatgtttat tcaaaaatga tatttttgac attctacttg tagaatgaca 10140 agtgaatcaa gcaactcctt catagaggtg accaaaatct aaaaagaaaa agaaaaaaga 10200 aatgaataaa tacccttacc ccatgactct tgaataatgt gtttttaaat gtatgaataa 10260 cggtatgtag tgaacttgtt gctcataact catgaaatgc atctttgcaa agactaaacc 10320 atcatactag atgaggtcaa agtttattga tcatagctgc ttgcgcttga aatgaggaaa 10380 ggccatcttt gttattcctt tcacgttctg aaataagtac atcccttgcg atcccttttt 10440 gagcctgaat aatttttctt tcataaaaac atcccgacta agatcacacc ctacactggg 10500 gcaagtgaaa tttcaatgat caagaaagat gataaagccg tgagaaagcc gaaaggcaaa 10560 agagcccaag aaactcaaat gctagggggc atgaccaaat cacaagaaaa agtgataacc 10620 aagataaagt gagtatgctc tagcgaagca atgaaagaga aaaacagaaa aagggcaagt 10680 aaaataagag cggcaaaaga aaagatgaat gacgtcaaga gtcaaactgt tgactgtgat 10740 cttcagtctt tgaaaccctg aaaacactct ttgagcctta tgaatccttt tctttcatag 10800 ccaaaaacca cagcctatgt tacgtgcctg tagaagtcct ttctaatcaa gcaagcaagc 10860 aatctagaac aataaataat gctctcaaaa tgcaaagaat attttttcat aagattcatg 10920 atatcaagaa taaactactc attattattc atgctgataa aaataaatgt tcaaaaaaaa 10980 aaagacaagt tttttctcat acaaaacctc gagctttttc tcgagccctt cacttcgaaa 11040 caaaaggtca tctcataaca tattttcacc gaagacctca ttgccaaaca caagagcaaa 11100 taatctcttt ttcaagaaag aaaataacca aggagttgca agatttcaaa aacaaattgt 11160 tttagactcg catcgaaata atttttgttt tcaaaatgca agatcaagat ttcaagattc 11220 attctagacc catacttctt caccaaactg aaaaggagag aaatgagaga atggtctctt 11280 aaaaccatta tttgtctaag tcgctgacag ggcacacttg ggggcaatga ccagtacaag 11340 ggggcaatat tgtgcttaag aaaaatctat atgttctaaa aaaaaaaagg gaacatttcc 11400 tacaacaaga caagggggca ttatggttta cgaaagacag tttgatcctt tcatcaagtg 11460 acaccaaata tttttatcag tgagacgagg agtaatgaat gatcccctca aactatttga 11520 cgagacagaa aatctctagc aagcaagtgg gtcatgatgg gcaccaccaa ggctgagttg 11580 tgcaaacaaa tctggaaaaa gtcttatatg ggctaactcg agtgggctaa aaagccaagc 11640 gacaaagatg actcaaatca gatagcaaga tctcaccaac caagcaacga gaagactaag 11700 aagaaattgg gggcctatat ttcaaatcag gtaaagatgc atgcatatca tttaaacttt 11760 gagacattgg acaatgagtt ttgcaaattt tattagagaa aattctaacg gaatccatca 11820 agcggaaggc caacttgaaa tggcgaacat tgaaattgct tttgaaaaat tttcactttt 11880 gagaattctt caatctgggc aggtcgccca tgagaattag gccacctgaa aaatcttttt 11940 atttttccac cacctttcag tttccactcc tgaggtagtg cattttctat cctacctcat 12000 tttgagttct tttcgagcac accttcgagc cctcgtctta tttcttttcg agcgcgcctt 12060 tgagccctcg accatcaaag gtagtgcatt tcctatccta cctcaattca agcgcgcctt 12120 cgagccctcg tcttatttct tttcgagcgt gccttcgagc cctcgaccat caaaggtagt 12180 gcatttccta tcctaccttc ttttgagtgc gccttcaagc cctcatttcc ttcgagcttc 12240 catctattaa ataatgcgcc ttcgagccct atcatgtctt attaaaaaaa aaaaaaaaat 12300 tcatattttt ccactgggca ggtaacccat tacaatatac catctgggca ggtaacccat 12360 tacaatgtga ccatctgggt aggtaaccca ttacaatata ccatctgggc aggtaaccca 12420 ttacaatgtg accatctggg taggtaaccc attacaatat accaactggg caggtaaccc 12480 attacaatgt gaccaactgg gtaggtaacc cattacaata taccatctgg gcaggtaacc 12540 cattacaatg tgaccatctg ggtaggtaac ccattacaat ataccatctg ggcaggtaaa 12600 ccattacaat gtgaccaact gggtaggtaa cccattacaa tataccatct gggcaggtaa 12660 cccattacaa tgtgaccatc tgggtaggta acccattaca atataccttc tgggcaggta 12720 acccattaca atgtgaccaa ctgggcaggt aacccattac aatataccat ctgggcaggt 12780 aacccattac aatgtgacca actgggtagg taacccatta caatatacca tctgggcagg 12840 taacccatta caatgtgacc atctgggccg gtaacccatt acaatatacc aactgggcag 12900 gtaacccatt acaatgtgac caactgggta ggtaacccat tacaatatac catctgggca 12960 ggtaacccat tacaatgtga ccatctgggc cggtaaccca ttacaatata ccatcataaa 13020 aaaaaaaaaa tcctcgtatt tttcaatcat tgggtaggtc gcctggaaca attagaccac 13080 tcgcgaaatt cttcgcgttt cttttatcat tgggcaggtt gcccaaaaca atttgatcca 13140 tttcaaaaaa aaaaaaaaaa aaaaacaaca acaacaacaa aaaatgggtc gtcttccaaa 13200 taacttgttc tctctgtaaa agtcatatgt caatctactg ttttcaaagt tttcaagact 13260 tttttttgta tctacttttc tttataaatt tactacacaa agctaaggaa aaatgaaaat 13320 tttcaatatc tttgtattgt aaatattata aagagggggc aact 13364 // ID M2_VM repbase; DNA; DCOT; 757 BP. XX AC AJ391759; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Vicia melanops repetitive DNA sequence, M2_VM. XX KW Repetitive sequence; M2_VM. XX OS Vicia melanops OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Fabeae; Vicia. XX RN [1] RP 1-757 RA Nouzova M., Neumann P., Navratilova A., Galbraith D., Macas J.; RT "Microarray-based survey of repetitive genomic sequences in Vicia RT spp."; RL Plant Mol. Biol 45(2), 229-244 (2001). XX DR Genbank; AJ391759; Positions 1 757. XX SQ Sequence 757 BP; 202 A; 166 C; 156 G; 233 T; 0 other; tcgaacgctt tctggcaatc ttctgtccat acaacccctt gattctttcg gagaagtttg 60 aagatcggcc cacaagtagc agtcatttga gagatgaatc tggagatgta gttcaatcgt 120 ccaagaaaac ccctcacttg cttttctgtt tttggtgcag gcatttcttg aatagccttg 180 actttgtcag ggtctacttc aaaacctctt tggctgacaa tgaatcctag gagttttcct 240 gatctcaccc caaaagtgca cttgttagga ttcaagcgaa gttgatatat ccttagtcgt 300 tgaaataact tcaaaaggta ttcaacatgt tcctcttctg tgctggactt ggctatcatg 360 tcgtccacat acacttcaat ctctttatgc atcatgtcat gaaagagagt agtcatcgct 420 ctttgataag tcgcgcttgc gttctttaat ccaaacgaca ttactttgta gcaaaaggtg 480 ccccacggtg tgatgaaaga tgttttctcc atgtcttcgg gagccatctt aatctgatta 540 taaccggaga aaccatccat gaaggagaaa acattgaact tagcggtgtt atcaaccaag 600 gtgtcaatat gcggtaaggg aaaataatcc tttggactcg ctttgtttaa gtcatggtag 660 tcaacacaca ttcggacctt tccatctttc tttggaacag gcactatgtt ggctaaccac 720 tgacggtatt cggaagtgac gaggaaacct gcatcga 757 // ID Ogre-MT3_I repbase; DNA; DCOT; 11878 BP. XX AC AC151524; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE Autonomous LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-MT3; Ogre-MT3_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-11878 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC151524; Positions 78558 90435. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC In Medicago truncatula, there are distinct subfamilies of CC Ogres differing in their LTR sequences. CC Additional annotations: 6026..6311: putative intron. XX SQ Sequence 11878 BP; 3393 A; 2357 C; 2629 G; 3499 T; 0 other; gaaatggcga cttcactggg gacttaaatt ctacgcgggt taaacccacc ttatttttat 60 tttattttgt gctgtactat ttgtttatgc tttgtgcata tttgcttgca taccttgtta 120 cgtgagtggt gagataagtc ctacacccgg gcttgagtga agcataagat aggacggagt 180 acgatcatag tgccatacca ggagcggtcc tgcgatatgt gtacacgtga tgtaactcca 240 ctcaacatag gtctttcaaa agtaataata tgtcgtcatg agcagtcgtg attggcgtta 300 ttatttttga agtccgctaa acgttgagga cctttagatc acccttaacc catcttggct 360 ttttttttag gacgtagtgc ggtggctaaa ccaagagcag tcttgacttt ggtcgacacg 420 cgatactaca ctcaaactag acttacttat ggatgttatt ggactaggag cggtcctata 480 caccgatatg ttcataaggg aagttgtaat ttgggaactt ggtagaaccc gtgatacagg 540 tacaatttga aaccatagtc cttaccaaat ggcgttgtca ccttttgact ccaacattgt 600 ggacttaacc tcattatgta ttctatgtac ttcagcataa gcatgcatcc atgcattcat 660 tcataaatgt attttttttc atccattaaa ttgtcgaagg acttagacaa gcattttttg 720 taaatattgt agatggattc taagacgagg agtattaaga agtacacttt caagaaaccg 780 gatttgacaa ggctaaggga gttagcatct catgtgacta atccaagaga ttttcgagaa 840 cgtcatggga gattacttga cctcctcaaa gtgaaggtcg aagatggaat tttagagact 900 ttggtgcagt tttacgaccc aatttgtcac tgcttcacgt ttcccgacta ccagttggtc 960 cccactcttg aagaatattc cttttgggtt ggcttaccag tatccgaggg agaacctttc 1020 aacggccttg aacccagccc caaaaatgca actattgcag aagcccttca cctcaaacct 1080 tctgacttgg ttcatcctca cttcaccatt aaaaacaacc tccaaggctt aaccgccaag 1140 ttcctctacc aaaaagcctc cgactttgtg aaagccaaaa agaccaatgc ctttgaatct 1200 attttcacct tactcatata cggccttttc ttgtttccca acatggacaa ctttgtcgac 1260 ctcaacgcaa ttaagatttt tctagccaag aacccagttc ccactttact tgcaaacact 1320 taccattcta ttcaccacag aaatatccga gagggtggac tgattgtttg ttgtgcaccc 1380 ctgctataca gatggtatgc ttcacattta actaagtctg tcttctccaa agagaactcc 1440 gggaaagctt cttggtctga gaggatcatg cctctcactc cagctgacat tgtgtgggtc 1500 catgcgggta ctaacaccgc aggaattatt ggcagttgtg gagagtttga aaatgtgccc 1560 cttatcggta cgtgtggagg aattacttac aaccctactc ttgctatgcg tcagtacgga 1620 taccctatga aggggagacc tgacagtctt tctctgtcca atgagtttta tcttaacaaa 1680 aatgatcata caaatttgag gatgcggttt gtgcaagctt ggcactctat tcgtaagttt 1740 gatggaatcc aattgggaag aaaacagagc tttgcacatg aatcgtatac acagtgggtg 1800 attgatagag ctacagcttt tggtatgcct tataccttgc caagattctt atcttcgacc 1860 gttccagaaa tacctttacc tctactccca caaaccaagg aagagtacca agagcgttta 1920 gccgaagcgg aacgtgagat acatatgtgg aaaagggagt gtcagaagaa ggataaggat 1980 tatgagactg taatgggctt gctggagcaa gaagcctatg atagccgaca gaaagatgtg 2040 ataatcgcca agctgaatga aagaatcaag gagaaggatg ccgcccttga tcgaattccc 2100 gggcgaaaga agaagcgtat ggatctcttt gatggtccac attctgattt tgaggattag 2160 tccgcttcag gagcttgaga gtctcagttt gtttttcatg tctttttctt agtttttctt 2220 tatgtatttt ggagtctatc ccttgactca gtttgttaaa agggaattat ttgtgtttta 2280 ctttaaagtc tatctcttgg ctttgttgtt agaaagggaa ttatcttgtg atcaactttg 2340 ttttttagtg aattgtttag gttgatatgt ttacaaaatt gcttctatag gtccttcgat 2400 aaaaaaaata tatatataaa aattgcatat tctggcatat agcatatcat gcatcatatt 2460 gcattcataa aaagtgtcaa agccaagtct catactttcc tcatttctgc ctcaggagaa 2520 aagcaaaggt ggcccggcgt attcagtaca aacctacccg tgttcatcat acccgagcat 2580 acatcaagaa gaaaatggca gctgctgaac aaacgaacaa tgatcttagg gaggaggtta 2640 gtagcctcaa agaaggtatg gaaaagataa ctgcaatgat gatggacatg atggccgcac 2700 aggcacaagc ctctcaagca aaaattgttc agactgttca gggagatgtt gaagtctctc 2760 agcctgcggg ttctactgca actattagta ctacacagcc cttggtgaat cagttttcct 2820 ctggtgatat gacaaatatg tatagttcag ggtttcgtcc tactggctct cttggttctt 2880 ctattcctcc tcagtatcat atgccgccag gctatccgtg gggcatgcca ctcgcaaata 2940 atgaaggtgt tcgtcataat gcaccagaaa tgcagttccc ttttggacat caacaaacac 3000 cgttttatca gtccggccag ccttttcctc aggccactat gacctatgct ggacccctcg 3060 ttcatgctgg tcatcaagaa gtagaacagg tttatcactc taatagtgtg gctggtgatg 3120 atagggtagg aaacttggaa gaaaggtttg aggcggtgca caaagagtta aagactatcc 3180 gtggtaaaga aatgttcagt cagaatgtga atgacctctg cttggttcca gatgtggtga 3240 tacctcataa gtttaaaatg ccgatctttg aaaagtacac aggggatact tgccctgaga 3300 tgcacttagt cacatatgtc aggaagatgg tagctcacaa gaataatgag cctctgctta 3360 ttcactgttt ccaggacagt ttgactggtc ccgcacacac atggtatatg aatttgaagg 3420 gcatcacaac ctttgaggaa ttggccaatg ctttcatcca acagtacaag tataactctt 3480 atctggcacc taaccggaaa gaactgcaat ctatgactca gggtgataag gaatctttca 3540 aggaatacgc tcaacgcttc attcaaaagt ctgctcaaat ccgtccgcct ctggatgaaa 3600 gagaagtgtc cgatctattc tatgagactc tgagcccttt ctactcagag aagatgcttg 3660 gttgtgcctc acaaaagttt actgatatgg tagatatggg tgtgcgcatt gaagattggg 3720 tccgtaaggg acgtgtgagt aaagatggtg cttcttcagg tggttcatct aatggtaata 3780 ggaagttcgg aaatgggtcc tcaaagaaga acgctcaaga ggttggtatg gtggcccatg 3840 gcggatccca gcctatatac cctagctacc cgtatgttgc taacattcca ccacctaccc 3900 taactccaca aaatccaaac tatcaactac aaaggcctca agcaccccat ccatattatc 3960 caccactata tcaaccacaa ccttatcaac cccaaccgtt ttatcaacaa ccatactatc 4020 ccccaccacc tcaacaacaa cagcctcgcc ctcgagctca acaacaacat actcgccctc 4080 aaagaaacca atttccccct atccccatga catatgaagc cttgttacct tccttgcttg 4140 cccgaggtct tgttcagacc ctaccacctc ctcgtgtgca gaacccttta cccccttggt 4200 tccgtgctga tcgaaattgt gccttccatc aaggggcacc aggacacgac attgaacact 4260 gttaccccct taaagaggca gttcaaaagt tgattcacaa caaagattta tccttcactg 4320 acccgaaccc tgctgctcca gaccatcctc tgccacccca tgggcctact gttaacatgg 4380 ttgaagatta tcaagaaggg ggtcttgtca ctcgctctca ggatatcaaa actccgttgg 4440 ttccattaca tgtgaagatg tgtgaggcag ctatgtttag ccataatcat aatagttgtg 4500 aggtatgttc tgtggatccc cgcggttgcg cgcaagttca agatgatgtg caagggctaa 4560 tggatcggga agagctggtt gtcacaaggg aagagaagag tgtctgtgtt gtaatccctg 4620 tgttcaagga tagtgcgaaa ccaattgatg gtgttactcc ggtgttcaag gacagttcca 4680 agccagctgt cgctcctctg gtaatttgtg tgccgagacc caagccgttt ttctctcaaa 4740 acgccatgcc gtataattat gaacctacaa gcatagagaa tggtaaagaa atatcctgga 4800 gtccctcaac ttccgtgagt aacattgcag agaatagtca aattctgaga agtggacgca 4860 tccttccggc agttgtgcaa gcaaagaaga aagctccggt gatagagtca gtgccaatac 4920 cagatcctag caagggtaag agtatggttc aacctggtga aactgataat gatgagattt 4980 tgaagctgat caagaaaagt gattataaga tagtggatca gttattgcag actccatcaa 5040 agatttctat catgtcacta ttgacaagct ctgatgctca tagggatgca ttgatgaaag 5100 tgttgaatca agcctacgta gaccatgatg tgactttggg tcaatttggg agcattgttg 5160 gaaatgtgac ggcatgcaac aatctgagtt tcagtgatga agacctccca gtggagggga 5220 agaaccataa tatggccttg catatctctg ttatgtgcaa aacagattct ttgtccaatg 5280 tcttgataga taccggttct tccctcaatg tgatggcaaa gacgaccttt gataaattga 5340 catattcaga tggattcatt aggcctagtt gtgtatcagt aagggcattt gatggatcca 5400 ggaagacggt atggggagaa gtagatttac ctatcactgt tgggccccaa gagtttaaag 5460 ttacattcca gataatggat attcaagctt cctacagctg tttacttggt agaccgtgga 5520 ttcatgaagc cggggcagta acatccaccc ttcatcaaaa gttaaagttt gtgagtcgtg 5580 gaaaacttgt tacagtaagt ggggaatcag cttttttggt tagccatttg tcgtcttttt 5640 ccttcattgg tggtgaaagt ccggatggaa cgtcattcca agggctttcg gtcgaaagcg 5700 gtactacaag aggtgaaaca tgcatggcct ctctaaagga tgctcagaga gtaattcaag 5760 aaggaaaagc agaaggttgg gggaagttag tacagttgcc tgagaacaag cgcaaggaag 5820 gtctgggttt ctccagcaat aatcaagtga tgttcgaccc aactagaggt acttttcaca 5880 gtgctggatt cattaatgcg ccacctgaaa ctaatgcaat cttggaagat caatcagaag 5940 aggtggcacc tgactttgtg actccgggtg gaaactgctg caattggatt gctgttgaca 6000 tcccttctgc gatacctctt tctaagtaat gtgtttgtct tttttgttgc ttttttaaga 6060 aaactccttt cgtcctaccc cagacgaagg tgaaatcttg tagggtttgt ttttgctttg 6120 agtttatttt cagtattaat gaaaattgtc gtttctgtca cggccgttat tttattttag 6180 tgctttttct ggaaaaatgg taatacaaaa aaccaaaaaa cttgttctct ttttctttta 6240 aaaaaaaaat atcaatttca aaggtctgca ttcactcttt tgctaaaaaa tcaatcatga 6300 atcatatgca gactgaacat acatgagccc gttgaacata gtgaccctat gctgccttcc 6360 aactttgagt tcccagttta cgaagcttgg gtagaagagg atgaagagat tcccgatgag 6420 ctccgatgga tgttagagca agaaagaaaa gcctttcagc ctcacaagga agaaatagag 6480 ttaatcaacc tgggcactga ggatgataaa aaagaaatta agattggagc gtcgttggag 6540 gcgtctgtca agaaaaagat aattgagctt ctcagagagt atgatgatat atttgcatgg 6600 tcctacaaag acatgccggg gttagaccat gatgttgtgg aacaccgttt gcctttgaag 6660 cccgagtgtc ctccagtcaa gcagaagtta agaagatctc atccagatat ggctctcaag 6720 atcaaagagg aagtgcgaaa gcaaattgat gcaggtttct tgattacctc tgaatatcct 6780 caatggttgg ccaacatagt gcccgttcca aagaaagatg gtaaggtcag aatgtgtgtt 6840 gactatcggg atttgaacaa agctagtccg aaggatgatt tccctttacc tcacattgat 6900 gtattggttg atagtactgc tagatgcaag gtattctcct tcatggatgg attctccggg 6960 tataaccaga tcaagatggc tccagaagat agagaaaaga cgtcgttcat cacgccttgg 7020 ggcgcgttct gctacttagt aatgccgttt gggttgataa atgctggtgc cacttaccag 7080 agaggcatga ctaaaatatt ccatgatatg atacataaag agattgaagt gtatgtggat 7140 gacatgatcg tcaaatcagg cactgaagaa gaacatgttg agtatttgtc gaagatgttt 7200 caacggttga gaaagtacaa actccgtttg aatcctaaca agtgtacctt cggtgttaga 7260 tccggcaagc tcttgggttt tattgtcagc cagaagggta ttgaagtgga tcccgacaaa 7320 gtcaaagcta tcagggaaat gcctgctcca aagacagaga aacaagttag aggttttcta 7380 ggaagactga actacatctc cagattcatc tctcatatga ctgccacatg tgggccgata 7440 ttcaagttac tccgtaaaga tcaagggatt gtttggacgg aagattgcca gaaagctttt 7500 gacagcatca aagggtattt gttagaacct ccgattcttg tccctccggt cgaagggagg 7560 cctttgatca tgtatttgac tgtgttagaa gattctatgg gctgtgtgtt gggtcaacaa 7620 gacgagactg gaaagaaaga gcacaccatt tactacttga gtaagaagtt tactgattgt 7680 gagtcccgat attctatgct tgagaaaacc tgttgcgctt tggcatgggc tgctaagcgt 7740 cttcgtcact atatggttaa tcacactact tggttgatat ccaaaatgga tccgatcaag 7800 tacatttttg agaagccggc tttaacagga agaattgctc gttggcagat gttattgtcc 7860 gagtatgaca ttgtctaccg cactcagaaa gccatcaaag gtagtattct tgctgaccat 7920 ttagctcatc aaccaattga agattatcag cctatcaagt ttgatttccc agatgaagag 7980 atcatgtatt tgaagatgaa agattgtgac gaaccattgt ttggtgaagg tcctgatcca 8040 gactctaagt ggggtttgat atttgatggg gccgttaatg tctatggtaa tggaataggg 8100 gcggttatcc ttactccaaa gggtactcac attcctttca ctgcaagact ccggtttgat 8160 tgcacgaaca acattgcaga atatgaagct tgcatcatgg gtattgaaga agccattgac 8220 ttgaggatca aaaatattga catatatgga gattcagctc ttgtgattaa ccagatcaaa 8280 ggaaaatggg aaactcacca tgatggtttg gtaccttaca gagactatgc aagacgtttg 8340 ttgactttct tcaacaaggt ggaactgcac cacattcctc gggatgagaa tcaaatggca 8400 gatgccctag ctactttatc ttcaatgatc aaagtgaatc atggcaatga cgtgccgctg 8460 atcagtgtca aattccttga taggcctgct tatgtgtttg cagccgaagc agttttcgat 8520 gataagccgt ggtttcatga tattaaggtg tttcttcaaa ctcaagagta ccctcctggg 8580 gcatcccgta aagataagag aactttaaga agattgtctg gtaacttctt tctaagtgga 8640 gatgttttgt acaaaaggaa ctttgattca gttttgctcc gatgtgtgga ccgacgagaa 8700 gcagatttat taatgcatga gatacatgaa ggctcatttg ggacccattc tagtggatat 8760 tcaatggcta agaaagcatt gagggcaggc tactactgga taacaatgca tgctgattgc 8820 catcactatg ccaagaaatg tcacaagtgc cagatttatg cagataagat tcatgtacca 8880 ccgtctatgc tcaacgttat ctcgtctccg tggccgttct ctatgtgggg cattgatatg 8940 attggtcgga tcgaaccaaa agcttccaat ggacatcgtt tcatactagt ggccattgac 9000 tacttcacca agtgggttga agcggcttct tatgccaatg tgaccaagca ggtggtggtc 9060 cggtttatca agaacaatat catatgtcgc tatggtgtcc ctaacaagat tatcacggat 9120 aatggtacga atttgaacaa taagatgatg aaggaattat gtgatgattt caagattgag 9180 catcataact cttctcctta tagaccccag atgaatggtg cggtcgaagc tgcaaacaag 9240 aatatcaaga aaattgtgca gaagatggtg gtcacctata aggactggca tgagatgtta 9300 ccctatgctt tgtatggtta ccgtacttca gtgcgtactt caacaggggc aacccctttt 9360 tccttggtgt atggtacgga agcgatactt cctgtagaag ttgaaatccc gtctttgaga 9420 gtcttgatgg aagctgagtt gtcagaggct gaatggtatc agaataggta cgatcagttg 9480 aatttgattg aggagaagcg catggctgct ttgtgtcacg gacaactata tcagacaagg 9540 atgaaacaag catttgataa gaaggttcgt ccccgtgaat ttaaagaagg agacctagta 9600 gtcaagagta tcaagtcttt tcaaccagac cctaggggca agtggacacc taattacgaa 9660 ggtccctatg tagtgaagag agctttctct ggtggtgctt taattcttac aaccatggat 9720 ggagaggatt tacctcgtcc tgtgaattct gatgcagtca agaaatactt tgtctaaatg 9780 tttataaaag aacagctcgg taggttgaaa acccgaaagg gcggcctaaa ccaaaaatga 9840 gcgtctcggt ggactgaaaa cccgaaaggg cggtccaggc aaaaattaga gacaaaaaaa 9900 aaaaaaaaaa aaaaaaatat atatatatat atatatcctg atagattgaa aacccgcaag 9960 ggcgatctat gcaaaattta aggattatga caagtaactg catcagatga agcatcactc 10020 acttggggca cctaagccgt caaaagatct tcgatattga agcaatcgaa atagtggaat 10080 ccaaagttgg taggaagtat gatggttatt gtgttcaatg taccttcccc atattaatta 10140 ccatgttcca aactttgtga tctgtggtgc catacctttg gttggttacc atttatttta 10200 aatcaatttg agcccgtgcc ttttatttga agttcctatt tattctatgt gcaagttctc 10260 ttccattttt actgttaata cttgaggtaa aaactttgaa aattcctttt aaaaaaaatc 10320 tttatgtttt cttttggaaa aagcaaaatt gacaaacatt ttatctttaa ttcacgtatc 10380 gtagaaacat gtgtcaatgt tcgattcaaa agcacgggta tggtcattgc taaaaaaata 10440 taaaaaaaaa aaaaaaaaaa aaaaaaagaa aaaaaatgaa ctcgctaagt tgaaaacccg 10500 aaagggcggc ttaggcaaaa aagagcatcc cggtggattg aaaacccgaa agggcagtcc 10560 aggcaaaagt tagggatttc aaagtatacc aaaggaaaag caatgactat ttgaagcatg 10620 agcttgtgaa agtactccag ttcaatccag aaatggcgac ttcgtctagt ggtctgacta 10680 ttggttcatt gccccatcag tgttttgctt aaagggttgt gccctgatga agattaccgg 10740 gttgtttgta ctatggtacc gggccatttc cgttctggac ctgcccaatc acccctcaaa 10800 aatcttgcca ttgtattgtc atatgtgtct catacatatt cattcattca tgcatagata 10860 gcacgcatac aaatatcatt catgtatggt tgcattatta ccaggtgtct tatttcagtg 10920 tgtcccgtaa aaagtatctt ccccaatgtg tttaattcaa ggttgtcacc agttaaagct 10980 tatttcaagt ggcaggtccc tccgagcaat ctttgtgtca attcagttta gctccccagt 11040 aacttttgta agctatcctc gtactggtag cagttgactt ttattatgtt ggtcgttacc 11100 cgagttgagg taactgacgg tatttatttt tcgtatgttg gtcgttatcc gagttgaggt 11160 aactgacggt atttattttt cgtatgttgg tcgttacccg tgttgaggta actgacggta 11220 tttcctttcc ttttcgtaag ttggtcgtta tccgaattga ggtaactgac ggtttttcct 11280 tttcttatcg tatgttggtc gttacccgag ttggggtaac tgacggtatt tccttttcat 11340 aagttggtcg ttatccgagt tgaggtaact gacggtattt atttttcgta tttcggtcgt 11400 tacccgtgtt gaggtaactg acggtatttc cttttcataa gttggtcgtt atccgagttg 11460 aggtaactga cggtatttat ttttcgtatt tcggtcgtta cccgtgttga ggtaactgac 11520 ggtatttcct ttttgtaagt tggtcgttac ccgtgttgag gtaatcgaca gtattttctt 11580 ccgtatgtcg gtctttacct tagtaagggt aatagacaat ttttctctcc gcataatggt 11640 aaatggtttt cctccccaat aatatttatc tgtatgtccc ccagtcagta ggtgttcact 11700 atccttgcat tcgtaagtgc atcgtaagta ttcatattat tacagtcatg agcatggcat 11760 tcttagcatt tcaattggtc aaaattagcg tacttaatat ttaagtctct cccacccatg 11820 gattctaaag ttgatatttg taaatccctg tgacggagaa acttaaatag gggcatct 11878 // ID CALYPSHAN_I_MT repbase; DNA; DCOT; 11739 BP. XX AC CT573400; XX DT 25-JAN-2007 (Rel. 12.01, Created) DT 25-JAN-2007 (Rel. 12.01, Last updated, Version 1) XX DE Internal region sequence of LTR retroposon, CALYPSHAN_MT, from DE Medicago truncatula. XX KW Gypsy; LTR Retrotransposon; Transposable Element; LTR; retroposon; KW ORF; Interspersed; aspertyl peptidase; CALYPSHAN_I_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-11739 RA Shankar R., Jurka J.; RT "CALYPSHAN_MT: LTR retroposon from barrel medic."; RL Repbase Reports 7(1), 3-3 (2007). XX DR EMBL/GenBank/DDBJ; CT573400; Positions 58822 70560. XX CC The internal region shows characteristic features of a Gypsy-like CC LTR retroposon with arrangement of domains in a pattern of CC gag-protease-RT polymerase-RNAse-Integrase. CC Two ORFs are present. In general the element is present in the CC genome with high copy number but most of them are incomplete or CC interrupted with just ~10 intact copies. The copy number, size of CC internal region and LTRs indicate that this element can belong to CC CALYPSO group of Gypsy-like retroposons. XX FH Key Location/Qualifiers FT CDS 6344..9814 FT /product="GYPSHAN2_I_MT_2p" FT /translation="MCRLNISEPVEHSNPMLPPNFEVPVYEAMIEEDEEIP FT DEIKWMLEQERKTIQPHQEEIEIINLGTEEDKKEIKIGALLETSVKERVIE FT LLREYADIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSNPEMALK FT IKEEVRKQIDAGFLVTSEYPQWLANIVLVPKKDGKVRMCVDYRDLNKASPK FT DNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGA FT FCYLVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHV FT EYLLKMFQRLRKYKLRLNPNKCTFSVRSGKLLGFIVSQKGIEVDPDKVRAI FT REMPAPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDD FT CQKAFDRIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKK FT EHAIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMD FT PIKYIFEKPALTGRIARWQMLLSEYDIMYRTQKAIKGSILADHLAHQPVED FT YQPIKFDFPDEEVMYLKAKDCDEPVFGEGPDPESEWGLIFDGAVNVYGSGI FT GAVLITPKGTHIPLTARIRFDCTNNIAEYEACIMGIEEAIDLRIKKIVIYG FT DSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMAD FT ALATLSSMIKVNGHNTVPVINVQFLDRPAYVFAAEAVEDDKPWYHDIQVFL FT QTQKYPPGISNKDKKTLRKLSSRFFLNGDVLYKRNFDGVLLRCVNEHEAEE FT LMHEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYA FT DKIHIPPSMLNVVSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKW FT VEAASYANVTKQVVVKFIKNNIISRYGVPNRIITDNGTNLNNNMMKELCDD FT FKIQHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPYALYGY FT RTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSRYD FT QLNLIEEKRMAALCHGQLYQSRMKQAFDKRVHPREFKEGDLVVKCIKSFQP FT DPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVNSDAVKKYFV" FT CDS join(2437..3369,3373..6051) FT /product="GYPSHAN2_I_MT_1p" FT /translation="MHHTAFIKGVKTKSHTLLISASERSKVARRIQYKPAR FT IHNTRAHIKKRMLAAEQENAQLREELVNLKGEMERMSIIMETLMAEREQAA FT ISDSAPVVVVTAAPDGLPRPTPTTATAIGLTQPLMTDFSSGNMATMGNSGF FT RPIGPHGQFSTPQYSMPLGYPWGMPLTASGGFRPSATEMPFAHGQQTSPPF FT QTDQLFPHAAMTQAGPSVHVEPQQEEQVYHSDSVMGDDKAVNWEERFGALE FT KEMSNMRGKEAVVQSIYDLCLVPDVDIPPKFKVPVFEKYQGDSCLQNHLTM FT YITKMIAYKNNVPLLIHCFDSLTGPAHTWFMGLKGITTFEQLADAFMQQYK FT YKTYLAPSRKELQSLTQKDKESFKEYAQRFIQKASQIRPPLDERELSEMFY FT ETLSPCYSEKMIVCASQKFTDLVETGIRIEEWTRKGVGASGSSAGSSSSGN FT KKFGNGYPKRNAQEVGMVAHGGSQPVYPNQSYVANITPQMTAPQNPNYQPP FT RPQGPSLYYPPLYQQPYNPQQLSQPPYYPQQPYYPQQPYQQRPHYPPQQQP FT RPQAPYNQQNQKQQFDPIPMTYGALLPSLLAQNRVHTLPPPRIPDPLPRWY FT RPELHCVFHQGAAGHDVERCYALKKEVQKLLDSKELTFADPDHVAQNNPLP FT PHGPAVNMIQDCQEDACIIYARDIKTPLVPIHVKMCEMALFSHDHEACHVC FT SVNPRGCMQVQEDVQGLLDKKELVVTKEIKSKSVCVVTPVFRDRRPLVINP FT NSAKPAVTPLVICVPKPAPPSSQKAVPYKYEGTILEPGNETTSSSVVDNIA FT DSSRILRSGRVLPAVVQKSTGVSVEETVKERNTGKGRVREHPKEVDYEDAD FT EILKLIKRSEYRVVDQLLQTPAKISILSLLSSSGAHRDALKKVLDQAFVDY FT DVTLGQFESIVGNVTACNSLSFSDEDLPAEGKKHNQALLISVLCRTDSLSN FT VLIDTGSALNVMPKSTLDQLTYSEALLRPSKVTVRAFDGTRRAVYGEIDLP FT ISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSHGK FT LITVSGESAFLISNLSAFSVIGGSSSDGSSFQGFSAEGSVSKIGTCMASLK FT DAQRVIQEGKTEGCGQLVELPENKRKEGIGFLNSRSGMFDPTEGSFRSAGF FT IHDSPGINALTDDTPEGVAPVFVTPGGTCCNWIAVDIPSVIPLSK" XX SQ Sequence 11739 BP; 3404 A; 2508 C; 2528 G; 3299 T; 0 other; gaaatggcga cttcactggg gatttagatc ctacgcgggt taaacccacc ttactttctt 60 tattttgtgc tttattattt gtttatactt tgtaaatatt ttgcttacat gattacttta 120 ttacgtgagt ggtgagataa gctctacacc cgagcttgag ggaaacttaa gataggacgg 180 tggtataatc atagttccat gccaagagta ctcttcggta ttggcacatg tgataacccc 240 actcaacgga gggatcttgg aagtatatgt tgtcaacgtg agtactcatg tttggcatgc 300 tattttcaag taacctttga agttgaggac ctttagtcac ctttaaccca tcttggcctt 360 ttaggaacgt agtgcggtgg ctaatcgaga gtactcttga attagttgat acgcgatact 420 acacccaaac gagactttcc gacgaatata attggaatgg gagtactccc gtcacccgat 480 aaatattcgg aagtggttaa agactttggg aacttggtag aacccttgtt acaagtgcaa 540 tctaaaaacc ttagtcctca ccaaatggcg ttgttaccct ttgactccaa catatgaatt 600 taaactcatc atgcatacat gcatccatcc ataaatattt ttttccattc atcatttttt 660 tgaaggactt ataaaagctt tgttgtaaac attgtagata tgaggaacct taggcagtat 720 agtttcagga agccagatct cttgagtttg aggaagctag ggaagaaagt ggtttgtacg 780 gacgatttct acaagcaaca tggaaatttg atgggtgttg ttaagacaga tatcgacgaa 840 gggcttctca acgcttttgt tcagttctat gacccgggct accattgctt tacttttcaa 900 gattaccaga tcctccccac cttggaggag tactcttgtt ggattaatct accagtgttg 960 gacaaagtac ctttcagtgg cctcgaggaa attcccaagc actcaaccat tgccgcagcc 1020 ctctatctcg aaacggacga agtgaaagca catctcatca ctaagggaaa acttttgggt 1080 ttctccaccg atttccttta cgaaaggacc acattctttg acaaaatggg ggttgcctat 1140 gcttttaact ccatccttgc cttgcttatt tatggcctcg tactcttccc tagcctcgac 1200 aactttgtgg acattaaggc cattcaaatt ttcttgtcaa ggaaccccgt tcctacctta 1260 ttaggtgata cttatctctc catccatagg cgtacccagg ctggtcgtgg aactatcctt 1320 tgttgtgcac aattgctata tcgatggatc acctcgcact taccccgaac tcctcgcttc 1380 accaccaatc cagaaaacct tctttggtca aaaagactca tgtccctgac tccaaccgag 1440 gtagtgtggt acgatcgggt ttatgacaaa ggaactatta ttgacagttg tgggaaattt 1500 gccaatgtac cacttcttgg tatagaagga ggaattagct acaatcctac gcttgccaga 1560 cgtcagttcg gatatcccat ggaagggaag ccgctcagca tctatctaga gaatgtgtat 1620 tacctcaaca tagatgacag taaaggcatg aaagagcagg ttgtgcgagc ttggcacacc 1680 attcgtagaa gagacaagag ccagttagga aggaagacag gagccgttca tgaatcatat 1740 actcagtggg tgatagatag agctgttcaa attgggatgc cttacaagat atcaagattt 1800 gtatctgcaa tcactccagc accaccccta cctatgacct ttgacaccga gaaggaatac 1860 caagagcgtt tagttgaggc ggaacgtgaa atacataagt ggaaagggga gtatcagaaa 1920 aaggatcagg agtatgaggc tgtgatggcc ctactagagc aagaagccta tgatagccac 1980 aagaaagatg tgataatcgc ccagctgaaa aagagtatca gagagaaaga tgccgcgctt 2040 gatcaaattc ccgggcggaa gaagaagcgc atggatctct ttgatgggcc gcattctgat 2100 tttgaggagt agctcggttc agaggcttga gagtctttca gtttgttttt gatgtttttg 2160 tgtagttacg gagtctatcc cttggctttg ttgttagaaa gggaattatc tcgttttatt 2220 ttgaaagtct atcccttggc tttgttgtta gaaagggaat tatcttgttt tactttgaaa 2280 gtttatccct tggctttgtt gttagaaagg gaattatctt gtaatcaact ttgtttttaa 2340 tgttttgttt aggttgatat gtttacaaaa ttgcttttat aggtcctttg ataaaatata 2400 aaaaaatctg cacatttttt ttgcatatag catatcatgc atcatactgc attcataaaa 2460 ggcgtcaaaa ccaagtctca tactctcctc atttctgcct cagagagaag caaagtggcc 2520 cggcgtattc agtacaagcc cgctcgcatt cacaacactc gagcccatat caagaagagg 2580 atgttagcgg cagaacagga aaacgctcag cttagagagg agctggttaa cctcaaggga 2640 gagatggaaa gaatgtcaat tataatggaa actttgatgg ctgaaagaga gcaagcagca 2700 atctccgact cagctcctgt tgtggttgtc acagctgcac ctgatggtct cccgcgacca 2760 actcctacta ctgctacagc tatcggcctc acccagcctt tgatgactga tttttcttct 2820 ggtaatatgg caactatggg taactcaggc ttccgtccta ttggccccca tggtcaattt 2880 tccactcctc agtattccat gcctctaggg tacccatggg gcatgccact tacagccagt 2940 gggggttttc gtccaagtgc tactgaaatg cctttcgctc atggtcaaca gacttcacca 3000 ccttttcaga cggaccagct atttcctcat gctgctatga ctcaagcagg acccagtgtg 3060 catgttgagc cacaacagga agaacaggtc tatcattctg acagtgtaat gggggacgac 3120 aaggcagtta actgggaaga gagattcggt gctttggaaa aagagatgag taacatgcgc 3180 ggtaaagagg ctgttgttca gagtatatac gatctttgct tggtaccaga tgtggatata 3240 ccccccaaat tcaaggtgcc ggtgtttgag aagtatcaag gggactcgtg tctacaaaat 3300 catctaacta tgtatattac gaagatgata gcttacaaaa acaatgtacc gttgctcatt 3360 cactgcttct aggacagttt gaccggtcct gcacacactt ggtttatggg tttgaagggc 3420 attactacgt tcgaacagtt ggctgacgct ttcatgcaac aatacaaata caaaacatat 3480 ctggcgccta gtcgcaaaga gttgcaatcc ttgacccaga aggataaaga gtcattcaaa 3540 gagtatgcac aacgcttcat ccaaaaggcc tcccagattc gtccgccctt ggacgagaga 3600 gaattatccg agatgttcta tgagactttg agcccttgtt attcagaaaa aatgattgtc 3660 tgtgcatcac agaagttcac tgatctggta gagacaggga tacgtatcga ggagtggact 3720 cgtaagggag ttggtgcttc aggaagttct gcaggaagtt catctagtgg taacaagaag 3780 tttggtaatg gttacccaaa gaggaatgct caagaagtcg gcatggtggc ccatggcggt 3840 tctcaaccag tgtacccaaa ccagtcttat gttgccaaca tcaccccaca aatgaccgct 3900 cctcagaacc caaactatca accaccaaga cctcaagggc cttcattata ttatccccca 3960 ctatatcaac aaccatataa cccacaacaa ctctctcaac caccctacta tcctcaacaa 4020 ccctactacc ctcaacaacc ataccaacaa aggccacact acccaccaca acaacaaccc 4080 cgtcctcaag ctccctacaa ccagcaaaat caaaaacaac aatttgaccc cataccaatg 4140 acttatggag cattattgcc ttccttgctc gcgcaaaacc gagttcacac attaccacct 4200 cctcgcattc cagatcctct cccacgctgg taccgccctg aacttcattg tgtttttcat 4260 caaggggcag cgggtcacga tgtggaacgc tgttatgccc tcaagaaaga ggtccaaaaa 4320 ttgctcgata gcaaagagtt gactttcgcc gaccctgatc atgttgccca gaacaatcct 4380 ctgccgcctc atgggcctgc tgttaatatg attcaggact gtcaagaaga tgcttgcatt 4440 atctacgcac gcgacatcaa gacccctttg gtaccgatac atgtgaaaat gtgcgagatg 4500 gctctcttca gtcacgatca tgaagcttgt catgtatgtt cggtgaatcc tcgtgggtgc 4560 atgcaagtcc aagaggatgt gcaagggctc ctagataaaa aggaacttgt ggttacaaag 4620 gaaatcaaga gcaaaagtgt ttgtgttgtc accccagtat tcagagatag gaggccactt 4680 gtgataaacc ctaacagtgc aaaacccgct gtcactcctt tggtaatctg tgtgcctaag 4740 cctgcacctc cttcctctca gaaagccgtg ccttacaagt acgagggcac aattttagaa 4800 cctggaaatg aaacgacatc atcctctgtt gtggacaaca ttgccgatag tagtcggatt 4860 ttaagaagcg gccgcgttct tcctgctgtg gttcagaaga gcactggtgt ttcggttgag 4920 gaaacagtaa aggagcggaa cacaggtaaa ggtagagtta gagagcatcc caaagaggtc 4980 gactatgagg atgctgatga aatcctaaag ctgatcaaga gaagtgaata cagggttgtg 5040 gaccaattgt tacaaacccc tgcgaagatt tccattttgt ctctgttatc aagctctggt 5100 gctcatcgag atgccctgaa gaaagttctc gaccaagctt ttgtggatta tgatgtgaca 5160 ttgggccagt ttgaaagtat tgtgggaaat gtgactgcat gtaacagcct gagtttcagt 5220 gatgaagacc tcccggcgga ggggaaaaag cacaatcaag ctttactcat ttccgtactt 5280 tgcagaacag actccctatc caatgttctg attgacaccg gctctgctct taatgtgatg 5340 cccaaatcaa ccttggatca actgacgtat tccgaggctc tcttgaggcc aagtaaggtg 5400 acggtgaggg catttgacgg gaccagaaga gcagtatatg gtgagataga tttgcccatc 5460 tcagtcggcc cccatgagtt tcaggttact tttcaggtca tggaaatcca ggcatctttc 5520 agctgtttac ttggcagacc atggattcat gacgctgggg cagtaacatc cactctccac 5580 cagaagctga agtttgtaag tcatggaaag ctcattactg tgagtggcga gtcagccttt 5640 ttgatcagca atttgtccgc tttctctgtc attggtggta gtagttcaga tgggtcgtca 5700 ttccaagggt tctctgctga aggaagcgta agtaagattg ggacttgtat ggcttcgttg 5760 aaggacgcac agagggtaat ccaggagggc aaaaccgaag gatgtggtca gctagtggag 5820 ttaccggaaa acaagcgcaa ggaagggatt ggttttctta acagtaggtc tgggatgttt 5880 gaccctaccg aaggctcttt tcgcagtgcc ggattcatcc atgattcgcc agggatcaat 5940 gcacttactg atgatacacc ggaaggagtg gcacctgttt ttgtgacacc aggaggaact 6000 tgctgcaact ggattgccgt agacattcct tctgtgatac ccctttctaa gtaatatgtt 6060 tgtcttgtct tttgtttttt acttttaaag aaaactcctt tcgtttttgc ccaagacgaa 6120 agtgaaatca tgtagggctt tgtctttgct tacagtattt tttattatga atgaaaatcg 6180 ccgtttctgt cacggcattt atttattttt tttttatata tatattctgt gcattttctg 6240 aaaaaaatgg taatagaaaa atccgaaaaa atcattctct tttttctttt aaaattttca 6300 aaatcaaagg tctgcattta ctcattaaaa tcaatcatga atcatgtgca gactgaacat 6360 aagcgagccc gttgaacaca gtaaccccat gcttcctccc aactttgaag tcccggttta 6420 cgaggctatg atagaggagg atgaggagat tcctgatgag attaaatgga tgttggaaca 6480 agaaagaaag acaattcagc ctcatcagga agagatagaa atcatcaatc tgggtactga 6540 ggaagacaag aaagaaatta agatcggggc attgttggag acatctgtta aggaaagagt 6600 aattgagctt ctcagagaat atgctgatat atttgcatgg tcatacaagg acatgccggg 6660 tctagaccct gatgtcgtgg aacacagatt gcctttgaag cctgaatgtc ctccggtaaa 6720 gcagaaattg agaagatcta atcccgagat ggccctcaag atcaaagagg aagtacgcaa 6780 gcagattgat gcaggtttcc tggtcacgtc agagtatcct cagtggttag ccaacatagt 6840 gctcgttcca aagaaagatg gcaaagttag aatgtgtgtc gattaccggg atttgaacaa 6900 ggctagtccg aaggataatt tccctttacc tcacattgat gtattggttg ataacactgc 6960 taaatgcaag gtattctcct tcatggacgg tttttccggg tataatcaga taaagatggc 7020 tccagaagat agagaaaaga cgtccttcat cacgccttgg ggtgcttttt gttatttggt 7080 gatgccattt gggttgataa acgctggtgc cacttaccag agaggcatga ccaaaatatt 7140 ccatgacatg attcacaaag aaattgaagt ctacgtagat gatatgattg tcaagtctgg 7200 cacagaagaa gaacatgttg agtatttgtt gaagatgttt cagcggttga gaaagtacaa 7260 actccggttg aatcctaaca aatgtacctt cagtgtcaga tctggtaaac tcctaggctt 7320 tatcgtcagt caaaagggta ttgaagttga tcccgacaag gtcagagcca tcagagaaat 7380 gcctgctcca aagacagaga aacaagtcag aggttttctt ggtagactga attatatctc 7440 cagatttatc tctcacatga ctgccacatg tggaccaatt ttcaagttac tccgcaagga 7500 tcaaggggtg aagtggaatg atgattgtca gaaagctttt gaccgaatca aagaatatct 7560 gttagaacct ccgattcttg ttcctccagt tgacggaaga cctttgatca tgtatctaac 7620 agtactggaa gattccatgg gctgtgtgtt aggtcaacaa gatgaaaccg gaaagaaaga 7680 gcatgctatc tactatttga gtaagaagtt cactgattgt gagtctcgat attctgtact 7740 tgagaaaact tgttgtgctt tggcctgggc cgccaagcgt ctccgtcatt atatgattaa 7800 tcatacaact tggttgatat ccaagatgga tccaatcaag tacatatttg agaagccagc 7860 tttaactgga aggatcgctc gctggcaaat gttattgtcc gagtatgata tcatgtatcg 7920 cacccagaaa gcaatcaaag gcagcatctt ggcagaccat ttggcccatc aaccggttga 7980 agactaccaa ccaatcaagt ttgacttccc agatgaagag gtcatgtatc taaaagcgaa 8040 agattgtgat gaaccagtgt tcggtgaagg tcctgatcct gaatccgaat ggggtttgat 8100 atttgatgga gccgttaatg tctatggtag tggaattggt gcagttctca ttacccctaa 8160 gggtactcac atccctctta ctgcaaggat tcgatttgat tgtacaaata acattgcaga 8220 atacgaagct tgcatcatgg gtatcgaaga agccatcgac ttgaggatca agaaaattgt 8280 catctatgga gattcagctc tcgtgattaa ccagatcaaa ggagaatggg aaactcgcca 8340 tcctggtttg attccctaca gagattatgc aagacgattg ctgactttct tcaacaaagt 8400 agagttacac catgtgcccc gtgatgagaa tcaaatggcg gatgctttag ctactctatc 8460 ctcaatgatc aaagtgaatg gtcacaatac tgtgccggta atcaatgttc aattcctcga 8520 tcggcctgct tatgtgtttg cagctgaagc agttgaggat gacaaaccat ggtatcatga 8580 tatccaagtc ttccttcaga ctcaaaaata cccgcctggg atatccaaca aagacaagaa 8640 gaccttgaga aagttgtcaa gccgtttctt cctcaacgga gatgttttgt ataagagaaa 8700 ctttgatggg gtcctactca gatgtgtgaa tgagcatgaa gcagaagagt tgatgcatga 8760 gatacatgaa ggctctttcg gaactcactc atgtgggcac gccatggcaa agaagatatt 8820 gagggctggg tattactgga taacaatgca tgcggattgc tacaaccatg ccaagagatg 8880 tcacaaatgt cagatctatg ctgacaagat tcatatacca ccatctatgc tcaatgtcgt 8940 ctcttccccg tggcctttct ctatgtgggg cattgacatg attggtcgga ttgaaccaaa 9000 agcctccaat gggcatcgct tcatactagt ggccatcgat tatttcacca agtgggttga 9060 agcagcatct tatgccaatg tgaccaagca ggtagtggtc aaatttatca agaacaacat 9120 catcagccgc tacggtgttc ccaacagaat catcacagac aatggcacaa atttgaataa 9180 caatatgatg aaagagttgt gcgatgactt caagattcaa catcacaatt cttctcccta 9240 caggccacag atgaatgggg cagttgaagc tgcaaacaag aacatcaaga agatcataca 9300 gaagatggta gttacttaca aggactggca tgaaatgtta ccttatgctt tgtatggata 9360 tcgtacctca gtgcgaacct caacaggggc aacccctttc tctttggtat atggtatgga 9420 ggctgtacta ccagtagaag tggagattcc ttctttaaga gtcttgatgg aagctgaatt 9480 gtctgaagca gaatggtgcc agagtaggta cgaccagttg aatttgattg aggagaaacg 9540 catggccgct ttgtgtcatg gacagctata tcagtcaagg atgaaacaag ctttcgataa 9600 aagagtccat cctcgtgaat tcaaggaagg agatcttgtg gtcaaatgta tcaaatcctt 9660 ccaacccgat cctaggggca aatggacgcc aaactatgaa ggtccctacg tggtgaagag 9720 ggctttctct ggtggtgctt taattcttac aaatatggat ggagaggagt tacctcgtcc 9780 tgtgaattct gatgcagtca agaaatactt tgtctaaata tatataaagg aacagctcgg 9840 taggtcgaaa acccgaaagg gcggcttaaa ccaaaaatga gcgtcttggt ggatcgaaaa 9900 cccgaaaggg cgatccaggc aaaaattaga gacaaaaaaa aaaataaaaa aaaaaaaaaa 9960 aaaaaatcct gatagatcga aaacccgcaa gggtgaccta tgcaaaaact aaggatcaag 10020 acaagtaact gcatcagatg aagcatcacc cgcccgagac accctggttg tcataagttc 10080 tctaatatcg aagcatccaa gccgtggaat tcaaagtcgt taagaagcat agcggttatt 10140 gtgttcaatg tacctatctc atataattac catattccaa tttttgtaat ctgtggtgcc 10200 atgcctttgg ccggttacca tttctattaa atcaatttga gcttgtgcct ctttgttgga 10260 attcttgttt attctatgtg caaaaaaaat ctttcttcca tttttagtac taatacttga 10320 agcaaaaact tgaaaatctt tctaaaattt tttatgtgtt aaaaaaaaaa aagagacaaa 10380 aaaaagacaa acatattatc ttaaaaaaaa catgtatcat ataagtatgt gtcaacagtc 10440 ggttcgaaac gagcaggttc aataaagaag aaatagtcat tgcaaaaaaa aaaaaaaaaa 10500 aaaaaaaaag agcgccctag tggatcgaaa atccgaaagg atgatccagg caaaagttag 10560 ggatttcaaa aaaaatatat atacaaaaag gcaatgacta ttcaagcatg gaaatacggt 10620 gttgcattgg tgaaatggcg acttctaccc cggtctgtga gagctgtacc ccaacgatgg 10680 ttgattcatt ccccgtgact ttgtccccaa tgaaggtttc gagtgttcgt ccagtgatgc 10740 cgggccattc tccttgtaga cctgcccagt cctgcctcaa caatcttacc attatgtcgt 10800 catatgagtc tcatacatac tcattcattc atgcatacat agcacgcata taagtatcat 10860 tcatacatag ttgcattttt accctatgac ttattgcaat atccttagat atcaccccca 10920 gcatgtctaa ctccaaaatg tcatcaaatc aaacatgtgg caggtctcac cggtaatcag 10980 tctatacaat ttcccttggt cttcagacaa gttccttgtt cccctcaact ttatctttat 11040 caagtcactc ccttgatacc aaactttaca atgtcttcac ttttaccgtg tgtttgctat 11100 cccacaatgt tagcaaatcc tatcggtcca tcatgtcttt actttcgcca ctcgtcggca 11160 atcaatcatg tttttacttt cgtcactcgt cggcaattaa tcatgtcttt acattcgcca 11220 ctcgtcggca atcaatcatg tttttacttt cgccacttgt cggctaaatc atgtctttac 11280 tttcggccga tcatgttttt actttcgcca cttgtcggct aaatcatgtc tttactttcg 11340 ccactcgtcg gccaatcatg tctttacttt cgtcactcgt cggcaatcaa tcatgtcttt 11400 acattcgcca ctcgtcggca atcaaccatg tttttacttt cgccactcgt cggccaatca 11460 tgtctttact ttcgccttga aacaatgtca tttatactta cccatcattt ctttccccag 11520 tgatccctat ccatttgtct cccagtcagt ctctgcatca tcttttacct tcatacttac 11580 atcatattta gtcgtattgt cacattcatc agcatcacac ttctgacgtt tcaaatggtc 11640 caaaattggc gtttttatat atttaagtct ctccgaccct ttggtttaaa aagttctctt 11700 ttaaaacctt tgtgatgaag aaacttaaat aggggcatc 11739 // ID AFROSINE repbase; DNA; DCOT; 160 BP. XX AC . XX DT 19-DEC-2003 (Rel. 8.11, Created) DT 20-JUL-2005 (Rel. 8.11, Last updated, Version 2) XX DE SINE elements from African endemic mammals - a consensus DE sequence. XX KW SINE; Non-LTR Retrotransposon; Transposable Element; AFROSINE. XX OS Proboscidea OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Lamiales; Martyniaceae. XX RN [1] RA Nikaido M., Nishihara H., Hukumoto Y., Okada N.; RT "Ancient SINEs from African Endemic Mammals."; RL Mol. Biol. Evol 20(4), 522-527 (2003). XX RN [2] RA Nikaido M., Nishihara H., Hukumoto Y., Okada N.; RT "Direct Submission to GenBank."; RL Direct Submission to Genbank (08-NOV-2002)Masato Nikaido, Tokyo RL Institute of Technology, Graduated school of Bioscience of RL Biotechnology; 4259 Nagatsuta-cho Midori-ku, Yokohama, Kanagawa RL 2268501, Japan (E-mail:mnikaido@bio.titech.ac.jp, RL Tel:81459245742, Fax:81459245835). XX RN [3] RA Kohany O., Jurka J.; RT "AFROSINE consensus."; RL Direct Submission to Repbase Update (30-NOV-2003). XX DR [3] (Consensus) XX CC Average similarity to consensus 92%. XX SQ Sequence 160 BP; 41 A; 38 C; 42 G; 38 T; 1 other; tgctaaccaa aaggtcggca gttcgaaacc accagctgct ccaygggaga aagatgtggc 60 agtctgcttc cgtaaagatt tacagccttg gaaaccctat ggggcagttc tactctgtcc 120 tatagggtca ctatgagtcg gaattgactc catggcagtg 160 // ID Copia3-VV_LTR repbase; DNA; DCOT; 192 BP. XX AC AM448401; XX DT 16-AUG-2007 (Rel. 12.08, Created) DT 16-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia3-VV_LTR; KW Interspersed repeat; LG_I. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-192 RA Xu Z., Wang H.; RT "LTR_FINDER: an efficient tool for the prediction of full-length RT LTR retrotransposons."; RL Nucleic Acids Res 35(Web Server issue), W265-W268 (2007). XX RN [2] RP 1-192 RA Kohany O., Jurka J.; RT "LTR retrotransposons from grapevine."; RL Repbase Reports 7(8), 680-680 (2007). XX DR Genbank; AM448401; Positions 30716 30525. XX SQ Sequence 192 BP; 64 A; 18 C; 35 G; 73 T; 2 other; tgccaaagtt aggactttaa tttaggaata aaaaaaggag agatcattta ggatatttcc 60 ttatgattta gtttcctaat tttaggagag aattaagcta gattgatttt ttcttattca 120 gtcatttgtg tatatatatg tgtatggtgt gtaccgatwa awatatcaat aaaggagttc 180 agaaattctt ca 192 // ID TDC1 repbase; DNA; DCOT; 5251 BP. XX AC AB001569; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 16-AUG-2005 (Rel. 3.07, Last updated, Version 2) XX DE DNA transposon TDC1. XX KW DNA transposon; Transposable Element; TDC1. XX OS Daucus carota OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; OC Daucinae; Daucus. XX RN [1] RP 1-5251 RA Ozeki Y., Davies E., Takeda J.; RT "Somatic variation during long-term subculturing of plant cells RT caused by insertion of a transposable element in a phenylalanine RT ammonia-lyase (PAL) gene."; RL Mol Gen Genet 254(4), 407-416 (1997). XX DR GenBank; AB001569; Positions 5254 10504. XX SQ Sequence 5251 BP; 1662 A; 838 C; 1046 G; 1705 T; 0 other; cactacaaga aaacgcgaat ctgccaacca aatttaccaa cggaatcgtt ttggttgcag 60 tttcccaacg gaatgctgac tgattagtag gcaggccacg gtcaaacact caacaacgga 120 ataccaaccg ttccccaacc aataattaac aacggaagat tccgttggga aatgttggcg 180 ccaaaatcac ccgctgctcg gcaatgacag aattacttac gaattgccaa cgaaaatttt 240 agcaacggaa taccaacgga gtttttacgg attaccaacg gatattctgt tggtaatgtg 300 gtagtacatt cgtcattaat tcatttggta attccgttgc taatcggtca gtaaatgggg 360 gtgactttta caaaatagag gcgttggtaa ttcgttggta ttttagatcg gtcacctttt 420 cttaccgttg ggaatcggtt ggtaaaatag atcggtcaac tcgatatccg ttggtaaacc 480 gttggtatct tgaacatatt taatacattg gcagacagtt ggtactatta ttcagtcact 540 ttttcatccg ttggcaatcg gttggtaaac tagatcggtc agctcaactt ccgttggtaa 600 accgtcggta aagatcaacg gtcatttttc cgttggtaat ccgtcagtat ccaaaacata 660 ttaaataata tattggcaga cagatgataa tttaactcag tcaccttttt aaccgttggc 720 aatcggttgg taaaggagat cggtcaactc gatatccgtt ggtaaaccgt tggtaaggta 780 cagctgtcat attttccgtt ggtaatccgt cagtattcaa acatattaaa aagattgaca 840 gacagtttct tctttctttc tacgttttct aaacttatat cctctcattt tctctcctca 900 tagcaactga aaatagctaa aatcatctca atttttccca tttggatcga agctatttac 960 aagaaggtta gttattcttc atgtacattc taatatttat tcgttattat aatataaatt 1020 atttatgttg ataatctttt agtgttgtga agaattaaaa caatattcat gtttgatagt 1080 attttataaa aaatttataa ttgaccatgt atatatgtgt tgataatgtg atagtctaat 1140 tagtggttaa ttagatataa tttttagcaa ttatgcacta cattatgtgt aataagattt 1200 aacaaataca taaatctaaa catgatgttt gaaaacaata tagttctagt tatattaaca 1260 tgtgttagtt attgatttgg aagaatcatt tatattgact tgatatattt cactaaataa 1320 attttagtta aaatattgtt gttactgaat ttttatgtag gtggtcttga aacatgaata 1380 ataaccgatc ttggatgtac gaaaggacgg atgagagtgg tttcttgaat tctctattta 1440 tttctggagt ggaagaattc atgaatcatg ttatatctca gccaacgtct atgaatggta 1500 cgagtataca atgtccgtgc acaaagtgta agaatcggaa attttggaat tcagatatcg 1560 tgaagctaca tttgttgaag aatggatttg tgagagatta ttatatatgg agtcgacacg 1620 gagagtcata catttttaat gggaacgaag accaatcttc agcaaactat tcaaatgttg 1680 cacgtggcac agatgggaac aatttaatgt acaatatggt gattgatgca ggcggtccta 1740 gttttgatcc acatcgttca gaagagatgc cgaacgcaga agcacaaaat atatacaaca 1800 tgctaaattc ttcggaacga gagctatatg atggttgtga aacatcacag ttggctgcca 1860 tggctcaaat gttgagtctg aaatctgatc atcactggtc ggaggcatgc tatgatcaga 1920 catcacaatt catcaaaggc atcttgccta aagataatac atttctcgat agtttctatg 1980 gaacaaagaa acatatggaa ggactgggcc taccttccat tcatatcgat tgttgtgtta 2040 atgggtgcat gatatattgg aacgaagaca ttgacatgga gtcatgcaaa ttttgttcta 2100 aaccgagata taagatcaga gttaacagat ctacaagaga gagaaagaaa gtggctgttc 2160 aaaggatgat atattttcca ttggccccga gattacaaag gttatatgcc tcaccgacga 2220 ctgcagctca tatgagatgg catgctgatc attacaaaga agatggtgta atgcatcatt 2280 gttcagattc aggggagtgg aggcaatttg atagagcaca tccattattt tcctcggagg 2340 tcagaaatgt gagacttgga ctttctgctg acggatttca gccatttggt agttcaggca 2400 agcaatattc ttcttggcca attatagtga ctccatataa tttacccccc tggatgtgtt 2460 caaaagaaga gtacatgttt ctatccatac ttgtgcctgg cccgaggaat ccaaagcaga 2520 agatagatgt ttttcttcag ccattgattt ccgagttaaa aatgttatgg gaggttggtg 2580 ttgagacatg ggatacttcc ttaaagcaga attttcaaat gcgagctgca ttgatgtgga 2640 ctataagtga ttttcctgct tattcaatgt tatcaggatg gaaaactgct ggtcatttag 2700 cttgtcctca ttgtgctcat gaacatgatg cttataatct caaacatgga ggaaagccaa 2760 catggttcga taatcatcgg aagtttttgc ctgcaaatca tccatttcga aagaataaaa 2820 actggtttac caaggggaag gtcgtgtctg aatttcctcc acctattcgg acaggtgaag 2880 atgtcttaca agaaattgag tcacttggtt tcctccacct attccaactt ttgtagtgat 2940 gctcggaaaa aatgggaagc tggtgaagtg gacaatagag tagccatgca tgtatggcta 3000 ccttgggttg agttttggaa aactccagat ttccagacta aatcaaaaac tcaaaagaaa 3060 aatcgtcgtg gtgggacgga ccactaccct ccaactcaca caggtggttc agcatcctta 3120 agaactcatg ctgctgtcct ggtaagagct tgaacttaac taatctaatt tattttgtta 3180 ttctttattg attgtttggt tttggtttaa tgctttttat tgtaatgact attatatgga 3240 cagcctgtga tagaggataa tcgactaaga taattttgtt tgaaattcat atgatttaat 3300 tattctgaat gaagtaatat accatgcggt tttgaaatcc attgaggctc tggttcttcc 3360 ttgagtacat gtttatctat tttgcactaa ttatctttgc gcgttcgtca gaaagaatga 3420 ttagcctgaa tttatcaaac atttccgctg caaatagata aacactgagc tattaggaat 3480 aatcaagttt aatactacta tattacagaa catgtaattg tttgttgtgc taggctgtgg 3540 tgcacgggca aatgtataaa tgccaattat actatttaca acttgttgaa agcagcttga 3600 tagtgatttt ggcaggataa caaatgagat tcacttggcc tttagaatct tagaattttt 3660 attgtcaaat gattattatg aacattttgt tttaattttt atatggaata acattgtaga 3720 gaacctttaa aagatcgcac tcctgttgtt gcagtgtact taaattaata tatggatatc 3780 tgaaaaatat gaacagaaaa ctggcagata atagttttct ggtgaagtaa tatatactgt 3840 aatgagcttt gttgctggct tggcttggaa tttacctgtg atcagaaatg caggacatac 3900 tagtatgtgt ttttttaact tgtaaattaa atttaatttc aggcggagac taatggtaaa 3960 gatccaactc cggccgatgt gtatttgctt acacatacta agaaacgtga caaaaagacc 4020 tttgttacta agaaagcgga agcagtatat gtaagtagta ttccgaaata ttgcaattgc 4080 gagtgctgta ggagttttaa tatttttatt gtcgttattg ttgcacaaaa attaattggt 4140 atgatgtgtt ttcgttattt tacagaataa ggttattgaa attcgtgagg aacgctctaa 4200 acctattgaa ggttctgatg aacctcagat tgttgatgaa gacgaaatat tcttggaggc 4260 agttggaggg ctggacaaaa gaaatagaat atatggcttg ggttctttgc aaagcgtcat 4320 atatgggcca gaaagcaaga gcagtacatc cacttcccgt tacagtggct ctaacttcaa 4380 taaagaatat gagctaatgc aggttgagct ccaagaaatg aaggaacagg taaaggagtt 4440 acaggagacg agagataagg aacttgaaga tatgagaaac caaatggaag agatgaagag 4500 ccaacttgct ttggtattta aaaatcagaa cacaagttag gcaagttcat cagtacaaaa 4560 gacaatagca agctcctgct tttatatatt ctgctatata ttttgtacca acttaatgaa 4620 tggtatttgt gaatatttgg atacttgtga tcaggtactt tatttctaat caaagttagt 4680 ctttcttttg attctacaag tatttgttaa taatataatg tagtgtataa tgtagtatta 4740 gctaaaaaaa ctatatgtat ccaaaaaaag ttattgctta attttcccaa tcatttcact 4800 aataaaaaat gtattataaa atattaattt ttaacattcc ctacgaattt gcaaccaaat 4860 ataaaagcaa aacatgtaaa tttttccgtt ggtaaattac caagttacca accaaaagat 4920 ggttgctagt tgtggttgca atattagcaa cagagtagaa tccgttggca atctgttggc 4980 aaattaccaa cggaaattct gttggcaaat tagcaaccga aaatccgttg gcatattggg 5040 catctcagca aagtcaacac accaattttc cgttgataat ccgttgcaaa agtaccaacg 5100 gaaagtatat ttccgttggt aatagtttac caaccatgat tttactaaca gtttattccg 5160 ttggtaattc cgttggtacc tcgttttagc aacgggaatt tgtgtttacc aacggaaaat 5220 tccgttggga atctcgcgtt ttcttgtagt g 5251 // ID BRENSPM1 repbase; DNA; DCOT; 2112 BP. XX AC AB022082; XX DT 00-0000 (Rel. 4, Created) DT 00-0000 (Rel. 4, Last updated, Version 1) XX DE A portion of En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; BRENSPM1. XX OS Brassica rapa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; malvids; Brassicales; Brassicaceae; Brassica. XX RN [1] RP 1-2112 RA Suzuki G.; RT "Genomic organization of the S locus. Identification and RT characterization of genes in slg/srk region of s(9) haplotype of RT brassica campestris."; RL Genetics 153, 391-400 (1999). XX DR GenBank; AB022082; Positions 1 2112. XX SQ Sequence 2112 BP; 644 A; 375 C; 516 G; 577 T; 0 other; atggctggct ctgggactat ttacgagttg cggaattgga tgtatatgca tagagatgct 60 aacgggagag tgacgaaaga ataccttgcg gggctggaga catttatgca ccaagcagat 120 tcaacaccgc tcgcccaaga aagtggtaag atgttctgtc cttgtcggaa atgcaacaat 180 tcgaaattgg caaaccgtga aaatgtttgg aagcatttaa taaatagagg tttcacgcca 240 aattactata tctggtttca acatggggaa ggttataatt atgatcagaa tgaagctagt 300 agtagtaata gcaattttca ggaagaaccg gttaatcatc atttgcataa tgaacatagt 360 taccatcagg aggagatggt agattatgat agggttcatg atatggtagc tgatgcattc 420 gtagctcatg atgaagatga agaacctaat atagatgcaa aaaagtttta cggaatgtta 480 aacgcggcga atcaaccact ttacagtggt tgtagagaag gtctctctaa attgtcgttg 540 gctgctagaa tgatgaatat taaaactgat cacaatctac ctgaaagttg catgaacgaa 600 tgggcggact tgtttaaaga gtatttgccg gaagacaatg tgtctgctga ttcttattat 660 gagattcaga aattagttta tagtcttggg ttgccttcgg agatgataga tgtctgcatc 720 gacaactgca tgatctattg gggagatgat gagaagctcg aagcatgtcg attctgcaag 780 aagccacgat tcaagccgca aggacgggga cttaataggg taccgtacca aaggatgtgg 840 tacctaccaa ttacagacag attgaaaaga ttgtatcaat cagagcagac tgctgcaaat 900 atgagatggc atgccgagca tactcagacg gatggtgaga tgactcatcc atcagatgca 960 agagcctgga aacatttcaa caaagtacat ccggattttg ctagcaatag ccggaatgtg 1020 tatctcggat tatgcacaga tggatttaat ccgttcggaa tgtcagggag acaatattca 1080 ttgtggccag tctttcttac gccatacaac ctgccaccgg agatgtgcat gcaacgggag 1140 ttgctattct tgacgatatt gatacctggt ccgaaccatc caaaaaggtc cctggatgtt 1200 ttcctacaac cactgataaa agagttgaag gatttgtggt caacaggggt gaggacgtat 1260 gattgttcaa cgaagacgaa ttttacgatg cgagctatgc ttttgtggac cataagtgac 1320 tttcctgcat atgggatgtt gtctggatgg actacacatg ggagattagc ttgtccatat 1380 tgtaatggaa cgacagatgc gtttcaactg aagaatggta ggaagacaag ttggtttgat 1440 tgtcatcgtc gatttcttcc cattggccat ccttaccgaa gaaacaagaa tttgtttagg 1500 cacaaaaggg ttgtgagaga cacttctcca ccatatctaa ctggagaaca aattgaagca 1560 caaatcgact actacggagc taacgaaaca gttcgttggg gtggtaattg gcatgtccct 1620 cgtaatatgc ctgattctta cggtgttcat cacaactggc acaagaagag tatattttgg 1680 gagttgccat gttggaagga tcttcttctg cgccacaacc tcgatgtgat gcatatagag 1740 aagaatttct ttgagaacat catgaataca atattgaatg tcccagggaa gacaaaagac 1800 aacataaaat cgaggttgga cttgccggat atttgctcaa gaagcgagtt acatattaaa 1860 agcaatggac aagttcccgt tccgatattc agactgtctt cagaaaaaaa gtcggtgttg 1920 ttcaactggg tggcatcaga agtgaagttt cccgatgggt atgtttcaaa tctctctaga 1980 tgtgttgaaa agggtcaaaa gttctctggg atgaagagtc atgattgtca tgtctttatg 2040 caacgactac tgccctttgc atttgcggag ctacttccaa caaacgtaca tgaagcactt 2100 gcaggttcgt ag 2112 // ID SHALINE5_MT repbase; DNA; DCOT; 7373 BP. XX AC . XX DT 21-DEC-2006 (Rel. 11.12, Created) DT 03-JAN-2007 (Rel. 11.12, Last updated, Version 1) XX DE A LINE sequence from Medicago truncatula. XX KW L1; Non-LTR Retrotransposon; Transposable Element; retroposon; KW LINE; repeat; ORF; Interspersed; SHALINE5_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-7373 RA Shankar R., Jurka J.; RT "SHALINE5_MT: A LINE element from barrel medic."; RL Repbase Reports 6(12), 641-641 (2006). XX DR [1] (Consensus) XX CC The LINE sequence has 2 ORFs. The first one codes for zinc CC binding protein and another one has domains of reverse CC transcriptase, exo-endonuclease and RNAse. XX FH Key Location/Qualifiers FT CDS 1684..3126 FT /product="SHALINE5_MT_1p" FT /translation="MPMLHVQDSVMEELSVPYKGCLAVKLLDKKLGYNMMK FT TKLEAVWKPNKGFDLMEVGNSFFMVKFDDEEDKNKVINGGPWMIFDHYLAI FT RQWTPTFNAATATIDKTMAWVRIPNLNLVYYDESLLWAVASMVGTPVKVDI FT HTLRVARGKFARLCVEIDLTKPVVGKVGINGEWYHVQYEGLHVICTQCGCY FT GHVLKDCSHNLKSTTVTPESMVAPATAGPEVETETVHNKNGKEINVASRIS FT GVIIEEISTKAVNLSINGDPEFLHGDWIKVERKKRINKMNVRGPGGDVKAE FT KFQNLKNRIKELNAESSNILHENRNVGNNFQRNNSPNTSIKVGKNKQKRSR FT GDIGPSRIGPNNEKHNHIARSSGVYKGGYTATLIHEPQKSSCAEENGPTVK FT ACAKLDSSHSNSDIDINSKGGRNGNMSIVTNGDDSSQQHASIAATPREEIF FT LSHVVNKKKEDHDNISSMDGEDQNMGQAHDIQMHMI" FT CDS join(3129..4490,4494..6620,6624..7112) FT /product="SHALINE5_MT_2p" FT /translation="MWFSHARFLYPFIYSLMIIISWNCKGAQGLNFPKALN FT NFCRKNKVDVVALQETRCSGSVARKAIKKLGFKNHIVSEAQGFSGGIWLLW FT NRPDVEFEVIQNNFHFIHIKVKEKDVDPWLLTVVYASPRGNERDITWQQLR FT GIAANIQDLWLMMGDFNEIASLDEKKGGAQHDIRKCLNFSNWINECRLMEV FT TTTGTIFTWRGPKWNGRDRVFKKLGRVLCNVEWRLRYHEGFAKVLPRVQFD FT HHPIMVLMEGEPSNRGNRPFRFEAAWITHKDFHRFLREKWGRGSDLLHTIS FT NLTPQLKDWNHETFGNIFRRKNELLARLNGIQNSQNYGYSHFLEELEKDLQ FT EQLAVTLYQEECLWFQKSRSKWIADGDRNTKYYHAKTIIRRRKNKIMSLRD FT DSSDWVDEPDSLKNLVRSFYTNLFREDTPIRDNIVSWTTYPNVVEEQHERL FT SAIIQLNECRALFDMSPHKAPGEDGYPAVFFQQRWDTVVDSLFKFANQVWV FT NPSFISFINNTLLVMIPKLDKPEFVSQFKPISLCNGIYKIISKVIVNMIKP FT LLDRIISPYQSSFIPGRSIHHNIIMAKEMVHAMSKMKGQKGFMSIKIDLEK FT AYDRLNWNFVKNFLEECKFPPQIIQIIHHCISSPSYKIMWNGEKIDIFYPS FT RGIRQGDPLSPYLFVICMDKLSHIIADQVEANYWLPMRAGRYGPKISHLLF FT ADDLLLFAEASIEQSHCVLHCLDTFCQASGQKINRNKTHVYFSKNVDTQLR FT AEILQHTGFNQVNSLGRYLGANLATGRNSRGHFNHIVNKIQSKLSGWKHQC FT LSFAGRITLTKSVFNTIPYYHMQYAKIPKTICDEVDKIQHGFVWGDSDQGR FT KAHLISWDVCCLPKIDGGLGLRQARNMNEAFLMKILWNLINNPDKLWGKVL FT HSKYGRGKDLTANISVQPYDSPLWKALAGIWDDFKRHVVWKIGDGHSTNFW FT LDKWSPNNGSLLSISNQDYIDTTLTVRDVLTPSGDWDIDFLMNNLPDYTVS FT RVLALPAPTDKDGPDTIGWSGTNTHQFTVQSAYSLQHQNCPTVEGDWKILW FT KWHGPHCVQTFIWLAIHRRILTSLRRSRWGVGISPTCPCCGNDDETVLHVL FT RDCIHATQVWLHIVPSNVITNFFSFDCRDWFSNNLKRKMVGTSTCRWQTTF FT MTTCYLWKWRNKTIFEADFQRPNNPNILIQTFVRDIEDYNLELFHRGPKLT FT DTIYIGWKRPQEGWIKLNGDGACKDMGHISGCGGIFRDADGKWIKGYTKKI FT EACDALHAEMWGLYLGIEMAWREHFDHLIVESDSKILIDMISDEFKFNGNV FT PILVHRIRKLLRMD" XX SQ Sequence 7373 BP; 2299 A; 1211 C; 1575 G; 2288 T; 0 other; gggtgtaaat acagttgaaa acgagttact cgaatctttt taaagtttat tgagattcct 60 gaaagtcgtt gagtgttaga atcagtcaaa actcaatgga acttagcttg acaattgaac 120 aattaactca tgtttcatat taatttaggg ggtcatcgac agaggatgag aatcgcgtgg 180 gggtgccaac cttgtaggga tgtcagcgag tttccttgat gtctggacct cttgattcag 240 ctaaaaaaaa ctcgtgtttc atattatcag tgtcactaat catagtagct atgaacacta 300 gactgtctag agcgcattat gtgaaagttg cacacacatg gatagaagaa acaagaaatg 360 ccgcgaaaga gagaaaatca aatcaaatgt ggggaatcac atatttccaa caaagtgagg 420 attcacccac tatccgtgta atttttacag gccacattgt tttggttagt aggattagtg 480 tttgtctata aataccggac ttgtaaattt ttttaacata ggcaaccaat caaacaagtt 540 tttttgtcaa gtaatcttgc atctaaaatt catcttttaa gatagataaa taattttgcg 600 gctcaacaac ttctataatt tattctaaat cttattcatt ctcattttcc ttaactttta 660 aatttattgg acggcaaact agtaatataa gaattttttt ttgaaggagc aatataagaa 720 gaattatttc ttctctaata tatgagttga tgaaattaag atgaagatca taaatgtctt 780 tttcaccata cttgggtcac tgccacatat atagcgtgct gaatcactgt caattcaacc 840 gctataaagt gtcatgcgtt ggtgagagat gccatgtact aatccatctt ttaattctgg 900 aattaggtaa aaatcaattt tatacctaag aattttatca ttatttaata ttaagactta 960 agagctacaa ctgtattatt aaaaaaaaat tgtctaagag ctacttacta cttgacaaac 1020 actcaagttt ctatattaaa tgaaggaatt ttgttgcaat ataaaaagaa gcgtctgtaa 1080 aagatcctac cattaccata tctatcgaca atcaatgaaa cattattcaa tatttttgca 1140 ctttatgaga tagatggtac ctccacgatt aagtacaaaa gtttcaatat tctaaactga 1200 cttcaacggt gaatatcatg ttttttcctc cttaatccaa actataaaca aatgagaatt 1260 gtggtggtgg ggaatgttac gtttctctct ctcttttatt tttacggtct aaatcatata 1320 ttgattgtat caaatctcaa caaactcttt ggttaagaat acagttaaga ggatagtaaa 1380 gccaaagcaa taatagaaaa aaagtgctct gctagggttt cttagtatcc atgagtttca 1440 ctttcatgtc ttcacggcaa acaccagtta cgtcatcgaa acctcccgac ccacctgaca 1500 atggtggtga taagggaata ttcaatgcag aaaatagaga tgaaacaaat gggggaaaaa 1560 acccatgctc atgtccttcc gtgacaaggt tttggaatcg cagccttttg ttataaagga 1620 aaaagtggat ctggtggcaa acaagctagc acaagttgaa cacatcaaag gtataataga 1680 ttgatgccaa tgcttcatgt tcaagatagt gtgatggagg aattaagtgt gccatataaa 1740 ggatgtttgg cagtgaaact tcttgacaaa aagcttggtt acaatatgat gaagacaaag 1800 cttgaagccg tctggaagcc aaacaaagga tttgatctta tggaggtagg aaattctttc 1860 ttcatggtca aatttgacga tgaggaagac aaaaacaagg taattaatgg tggtccatgg 1920 atgatttttg atcattactt agccattcga caatggactc caacttttaa tgctgcaaca 1980 gccacgatcg ataaaactat ggcatgggtt cgaatcccga atttgaatct ggtttattat 2040 gatgagagtt tgttatgggc agtggcatca atggtgggaa caccagtgaa ggtcgacata 2100 catactttaa gagttgcgag gggaaagttt gcaagattat gcgttgaaat agatctcaca 2160 aaacctgttg taggaaaagt gggaatcaat ggagaatggt atcatgttca gtatgaaggt 2220 ttgcatgtta tttgcactca gtgtggttgt tatggtcatg ttttgaaaga ttgcagccac 2280 aatctcaaat ctacgacagt tacacctgaa tcgatggttg ctccggcgac cgccgggcct 2340 gaagttgaaa cagaaacggt tcacaacaaa aacggtaagg aaattaatgt cgcgagcaga 2400 atatcaggag taatcattga agagatttcg accaaagctg ttaatttaag cattaatggt 2460 gatccagaat ttttgcatgg tgattggata aaagtggaaa ggaaaaaaag aattaataag 2520 atgaatgtgc gtggacctgg tggggatgtg aaagcagaaa aattccaaaa tcttaagaac 2580 agaatcaaag aattgaatgc tgaaagttct aatattttgc atgaaaatag gaacgtcggc 2640 aacaatttcc agcgtaacaa ctctccaaat acaagcatta aagtggggaa aaataaacaa 2700 aagagatcta gaggtgacat tgggccaagt agaataggcc caaacaatga aaaacataat 2760 catattgcta gatcaagtgg tgtatacaaa ggagggtaca cggcaacttt aattcatgag 2820 ccacaaaaat ctagttgtgc tgaagaaaat ggacctacag tcaaagcttg tgcaaaattg 2880 gatagctccc attctaatag tgatatcgac atcaattcta agggaggtag aaatggcaac 2940 atgtccattg ttactaatgg agatgattct tcacaacaac atgcaagtat tgctgcaact 3000 cctcgtgagg aaatattttt gtcccatgtg gtgaataaaa agaaagaaga ccatgacaat 3060 attagtagca tggatgggga ggatcaaaac atgggacaag cccatgacat tcaaatgcat 3120 atgatctgat gtggttttca cacgcaaggt ttttgtatcc ttttatttat tctttaatga 3180 ttataatttc ttggaattgt aagggtgctc aaggattgaa tttccctaaa gcacttaata 3240 atttttgcag gaaaaacaaa gtggatgtgg tggctttgca agaaacccgg tgtagcggta 3300 gtgtagctcg taaggcaatc aaaaagcttg ggttcaagaa tcatattgtg tctgaagctc 3360 aaggtttctc aggaggtatt tggttacttt ggaataggcc agatgttgag tttgaggtaa 3420 ttcagaataa tttccatttt attcacatta aagttaagga aaaagacgtt gatccttggt 3480 tgcttactgt ggtttatgcg agccctcgtg gcaatgaaag agatataact tggcagcagt 3540 taaggggaat tgccgctaat attcaagatc tttggctgat gatgggggac ttcaatgaaa 3600 ttgctagtct tgatgagaaa aaaggtggag cacaacatga tattagaaaa tgcttaaatt 3660 tttccaattg gattaatgag tgcagattga tggaggtcac aactacggga actatattta 3720 cttggagagg tccaaagtgg aacgggcgtg atagagtttt caaaaaatta ggtcgtgttc 3780 tctgtaatgt tgagtggaga ttaagatatc atgagggttt tgctaaagtc cttccaaggg 3840 ttcaatttga tcaccatcct attatggtgc ttatggaggg ggagccttcc aataggggta 3900 atcgtccttt caggttcgag gcggcctgga tcactcataa ggattttcat agatttttgc 3960 gtgagaaatg ggggagaggc tccgacttgc ttcacactat ttctaacctt acccctcagt 4020 tgaaagattg gaaccatgaa acttttggga atatttttag aagaaagaat gagcttttgg 4080 ctaggttaaa tgggattcaa aacagtcaaa attatgggta tagtcatttc cttgaggaac 4140 ttgaaaagga tcttcaagag caacttgcgg ttacccttta ccaagaagaa tgtttgtggt 4200 ttcaaaagtc tcgtagcaag tggattgcag atggagatcg gaacacaaag tactatcatg 4260 ccaaaacaat cattagaagg cgtaaaaata aaattatgtc tcttcgagat gactctagtg 4320 attgggttga tgaaccagat agtttgaaaa atcttgttcg aagtttctat acaaacttgt 4380 tcagagaaga tactcctatt cgtgataata tcgtttcttg gaccacatat ccgaatgttg 4440 tggaggaaca acacgaaaga cttagtgcta ttatccaact aaatgagtgc taaagagctt 4500 tatttgacat gagccctcat aaggctcctg gagaggatgg ctaccctgct gtcttttttc 4560 agcaacgttg ggacaccgtt gttgattccc tttttaaatt tgccaaccag gtttgggtaa 4620 atccttcttt tatctctttt attaataata ctttgcttgt tatgattcca aaattagata 4680 aacctgaatt tgtttcacaa tttaagccta tttccctttg taatggtata tataaaataa 4740 tttctaaggt cattgttaac atgattaagc ctttgcttga tagaattatt tctccatacc 4800 agtctagttt tattccaggt cgaagcattc accacaatat tattatggct aaagagatgg 4860 tgcacgccat gtctaaaatg aaagggcaaa agggcttcat gtctatcaaa attgatttgg 4920 aaaaagctta tgatcgtctt aactggaact ttgtgaagaa ttttttggag gagtgtaaat 4980 ttcctccaca aatcatccaa atcattcatc attgcatttc ctctccgtcg tacaaaataa 5040 tgtggaacgg tgaaaaaatt gatatttttt atccttctag aggaattagg caaggggacc 5100 ctctttcccc ttatcttttt gttatttgta tggataaatt gtctcacatt atagctgatc 5160 aggttgaagc taattactgg cttcctatgc gcgcaggtag gtatggtcct aaaatctctc 5220 atttactttt tgctgatgat cttcttcttt ttgcagaagc ttctattgaa cagtcccatt 5280 gcgtcttaca ctgcctggat actttttgtc aagcttctgg tcaaaagatt aataggaata 5340 aaacccatgt gtatttttcc aaaaatgttg atacccaact tcgcgctgaa attttacaac 5400 acacgggttt taatcaggta aatagtttag gtaggtacct tggagctaac cttgctacag 5460 ggaggaattc cagaggacat tttaatcata ttgttaacaa aattcagagt aagttgagtg 5520 gctggaaaca tcaatgttta agttttgcag gtaggatcac tctcactaag tctgtcttta 5580 acacaattcc ttactaccat atgcaatatg ctaagatccc taagaccatt tgtgacgagg 5640 ttgataaaat tcagcatggt ttcgtgtggg gtgattctga tcagggtagg aaagctcatc 5700 tgattagctg ggatgtttgt tgtctgccta aaattgatgg aggtcttgga cttcgacaag 5760 ctcgtaatat gaatgaggct tttctcatga agattttatg gaacctgatt aacaatccgg 5820 acaaactttg gggtaaagtc cttcatagca aatacggacg tgggaaagat ctcactgcca 5880 atattagtgt gcagccttat gattcacccc tttggaaagc tttagcaggc atctgggatg 5940 attttaagcg tcatgtggtt tggaaaattg gagatggtca tagtactaac ttttggttag 6000 ataaatggtc tcctaataat ggatcacttc tatccataag caatcaggac tacatagata 6060 ctactcttac tgttagagat gttcttactc cttcaggcga ttgggatatt gattttctta 6120 tgaacaactt gccagattac actgttagta gggttcttgc tctcccggct cctacagata 6180 aggatggtcc tgatactatt gggtggagtg gaaccaatac ccaccagttc acagttcaaa 6240 gtgcttattc tctgcagcat caaaattgtc caacggtgga gggggactgg aagattcttt 6300 ggaagtggca cggcccacat tgcgttcaaa cttttatttg gttggctatt cataggcgaa 6360 tccttactag tttgcgaaga agtagatggg gtgttgggat ttctcctact tgcccatgtt 6420 gtgggaatga tgatgaaact gtccttcatg tgcttcgtga ttgcattcat gcaactcagg 6480 tatggcttca tattgttcct tccaacgtta taactaactt cttttccttt gattgtaggg 6540 attggttttc caataacctt aagagaaaaa tggttgggac aagcacatgt agatggcaga 6600 ccacctttat gactacgtgt tgatatttgt ggaaatggag gaacaagact atctttgaag 6660 cggatttcca aaggccgaat aatccaaata tactaatcca aacattcgtt agagatattg 6720 aagactacaa cttggagctc tttcatagag ggcctaagtt gacggacact atctacatag 6780 gatggaaacg acctcaggaa ggttggatca agctcaacgg cgacggtgcc tgcaaggata 6840 tgggtcatat ttccggttgt ggtggtattt ttcgtgatgc agatggtaaa tggattaaag 6900 gctacactaa gaagattgaa gcttgtgatg ccttacatgc tgagatgtgg gggttgtatt 6960 tgggtataga gatggcttgg agggagcatt ttgatcatct tattgtggaa agtgactcga 7020 agatattgat cgacatgatt tctgacgagt tcaagtttaa tgggaatgtg cctattttag 7080 ttcatcgtat caggaagctg ctgagaatgg attagcatgt gcaaatcaac catacttggc 7140 gtgaaggaaa tagaagtgcc gattggcttg ctaattttag catttctgtg aatcatttga 7200 atttgattat ttcggagact cctcctattg agcttcgaaa gctcatgttt gatgatattt 7260 cccgggcttg catgcctagg aatgtccggt taatttcgca gtttcttttc ttttgggctt 7320 tgccctctat tgtaccaaaa aaaaaataaa aaatctcaac aaataatgaa aaa 7373 // ID Harbinger1_MT repbase; DNA; DCOT; 470 BP. XX AC . XX DT 14-NOV-2006 (Rel. 11.11, Created) DT 01-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Harbinger like non-autonomous transposon from Medicago DE truncatula. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW transposon; non-autonomous; Inverted repeats; Harbinger1_MT. XX OS Medicago OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae. XX RN [1] RP 1-470 RA Shankar R., Jurka J.; RT "Harbinger1_MT: A novel non autonomous DNA transposon from Barrel RT Medic."; RL Repbase Reports 6(11), 569-569 (2006). XX DR [1] (Consensus) XX CC The sequence is self-complementary. XX SQ Sequence 470 BP; 144 A; 91 C; 90 G; 145 T; 0 other; ggcttaattg cacttttccc ccctatagtt tgccaattgt gcgattttgc accccatagt 60 tttaaacgag cgattttgcc ccctatagtt ttcccccttt ctgattttat ggtccccatg 120 acatttagtg ctgatgtgtc tgttttttta tcaattaatg tgtgccacgt gtgtaattcc 180 atttttttgg tatttttcag attttgagag aaggaggcac gtgatatttc ttcttaaaat 240 ctgaaaaatc acgtgcctcc ttctctcaaa atctgaaaaa tacaaaaaaa tggaattaca 300 cacgtggcac acattaattg ataaaaaaca gacacatcag cactaaatgt catggggacc 360 ataaaatcag aaagggggaa aactataggg ggcaaaatcg ctcgtttaaa actatggggt 420 gcaaaatcgc acaattggca aactataggg gggaaaagtg caattaagcc 470 // ID PSAT28 repbase; DNA; DCOT; 195 BP. XX AC AF155765; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Pisum sativum dispersed repetitive DNA, PSAT28. XX KW Repetitive sequence; dispersed; PSAT28. XX OS Pisum sativum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Fabeae; Pisum. XX RN [1] RP 1-195 RA Neumann P., Nouzova M., Macas J.; RT "Molecular and cytogenetic analysis of repetitive DNA in pea RT (pisum sativum L.)."; RL Genome 44(4), 716-728 (2001). XX DR Genbank; AF155765; Positions 1 195. XX SQ Sequence 195 BP; 48 A; 34 C; 49 G; 64 T; 0 other; tcgatactca atgcttgaga agactgttgt gctttggctt gggctgctaa gcgcttacgc 60 cagtatatgt tgaatcacac gacttggttg atatccaaaa tggatccaat caagtatatc 120 tttgagaatc ctgctttaac tgggaggatt gcccgttggc agatgttgtt atctgagtgt 180 gatattgagt atcga 195 // ID Copia3-VV_I repbase; DNA; DCOT; 5188 BP. XX AC AM448401; XX DT 16-AUG-2007 (Rel. 12.08, Created) DT 16-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia3-VV_I; KW Interspersed repeat; LG_I; internal portion. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-5188 RA Xu Z., Wang H.; RT "LTR_FINDER: an efficient tool for the prediction of full-length RT LTR retrotransposons."; RL Nucleic Acids Res 35(Web Server issue), W265-W268 (2007). XX RN [2] RP 1-5188 RA Kohany O., Jurka J.; RT "LTR retrotransposons from grapevine."; RL Repbase Reports 7(8), 679-679 (2007). XX DR Genbank; AM448401; Positions 35904 30717. XX CC Positions [2288-2797] - Integrase core CC 'TTAT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS join(626..1816,1820..3646) FT /product="Copia3-VV_I_1p" FT /translation="MTKYGMASSQVSSVTSPESGGRSEIPNLGGNDSSPIL FT ITGHKLNGHNYLQWSQSVLLFICGKGKDEYLTGEAVMPETTEPGFRKWKIE FT NSMIMSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVES FT ALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCSDDAATYRQIVEQKR FT LFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMMGSKEQ FT PAPTLDASALAARSFNSSGGDRQKRDRPWCDYCKKPGHYKETCWKLHGKPA FT DWKPKPRVDRDGRAHVAANSESTSVPEPSPFNKEQMEMLQKLLSQVGSGST FT TGVAFTANRGGMRPWIVDTGASDHMTGDAAILQNYKPSNGHSSVHIADGSK FT SKIGTGSIKLTKDLYLDSVLHVPNLDCNLLSISKLARDLQCVTKFYPNLCV FT FQDLKSGKMIGSAELCSGLYLLSCGQFSNQVSQASCVQSQSMSESFNSVSN FT SKVNKDSEIIMLHYRLGHPSFVYLAKLFPKLFINKNPASYHCEICQFAKHT FT RTVYPQIPYKPSTVFSLVHSDVWGPSRIKNISGTRWFVTFVDDHTRVTWVF FT LMKEKSEVGHIFQTFNLMVQNQFNSKIQVLKSDNAKEYFTSSLSTYLQNHG FT IIHISSCVDTPQQNGVAERKNRHLLEVARCLMFSSNVPNYFWGEAILTATY FT LINRMPSRVLTFQSPRQLFLKQFPHTHAASSDLPLKVFGCTAFVHVYPQNR FT SKFAPRANKCIFLGYSPTKKGYKCYSPTNKRFYTTMDVSFFEHVFFYPKSH FT VQGESMNEHQVWESFLEGVPSFHSESPNPSQFAPTELSTPMPPSVQPAQHT FT NVPSPVTIQSPMPIQPIAPQLANENLQVYIRRRKRQELEHGSQSTCGQYID FT SNSSLPEENIGEDRDGEVLIPSIDDSTLPIALRKGVRRCTDHPIGNYVTYE FT GLSPSYRAFATSLDDTQVPNTIQEALKISEWKKAVQDEIERGRFWGLGQFT FT " XX SQ Sequence 5188 BP; 1489 A; 1150 C; 1143 G; 1398 T; 8 other; tggtatcaga gccagttttc tgaaacccta atcccttctg gccacctctt attcaggcca 60 tcactcattc cggccaaatc tctctggcca tatctcaatc cgatcgtctc tatatctctc 120 tctctctcat tccggtcatc agtccctgtt ctcagagcca agggagaaaa cgctttccga 180 tcagtcgaat cgtcgtcaga aaacactcac cgccggcaaa attttccggc gaacttttcc 240 ggcgaacttt ccggcgacgg ttttttttct acaccgcaag gagcgcctgg aggagatcty 300 caatttgtcc caaagcaccg gaaccagaaa cccatccacg cgccgcccac gcgcgttttt 360 ccgtccgrcg actgcatctc acgcgccggc gcgtgagggc gcgtgagcca ctttccggcg 420 acgcgcttcc tcctccaggc tcgcctgacg ccgaccagcc acccttcctw cctgtttgtg 480 caatccaagc cctgcacgtg cctcttttgg ggttcttttg cttccgcggg ccctctgatc 540 agattttccg gcgtcctccg gctatttttt ctcaactcca gtccctgcac gtgccttggg 600 aagtgttctt ctacctttcc ggtccatgac aaaatacgga atggcatcat cacaagtatc 660 cagcgtcacg tcaccagaat cagggggcag atctgaaatt ccaaaccttg gtggcaatga 720 ttcctctcct attctcatca caggacacaa attaaatggc cataactatt tacagtggtc 780 acaatctgtg ttgctgttca tttgcggtaa aggaaaggat gagtacctca ctggagaagc 840 agtcatgcca gaaactacag aaccgggttt caggaagtgg aagattgaaa acagcatgat 900 catgtcatgg cttatcaatt ccatgaacaa tgacataggc gaaaatttct tgctgtttgg 960 gactgcaaag gacatatggg atgcagccaa agaaacttac tcaagttctg aaaatacttc 1020 agaactgttt caggttgaat cagctctaca tgacttccgc caaggagagc agtcagttac 1080 tcagtattac aacacactca caaggtattg gcagcaactt gacttatttg agactcactc 1140 atggaaatgt tcggatgatg cagcaacata caggcaaatt gtggaacaaa agagactgtt 1200 caagttcttc ctaggactaa acagggaatt ggatgatgtt agaggccgaa tcatgggcat 1260 taaacccctg ccaagtctca gggaggcttt ttcagaggtt aggcgtgaag aaagtagaaa 1320 gaaagtgatg atgggatcaa aagagcaacc tgccccaaca ttggatgcct ctgcccttgc 1380 tgctcggtca tttaatagta gtggtggaga tcgtcagaaa cgggataggc cttggtgtga 1440 ttattgtaag aaaccaggcc attataagga gacttgctgg aagcttcatg gcaaaccggc 1500 tgattggaaa ccaaagccac gggttgacag agatggcaga gcacacgtgg ctgccaactc 1560 tgagagcaca tctgttcccg agccgagtcc attcaacaaa gagcaaatgg agatgctaca 1620 gaaattatta agccaagttg gcagtggcag tactaccggt gtagccttca ctgctaatcg 1680 aggaggaatg aggccgtgga tagtagacac aggtgcttct gatcacatga caggagatgc 1740 tgccattctt caaaattaca agccaagtaa tggtcattca tccgtccata ttgctgatgg 1800 ttcaaagtca aaaattgycg ggacaggttc tataaaactt actaaagact tatatcttga 1860 ctctgtcctc catgttccaa acttggattg taatcttttg tccattagca aattggctcg 1920 tgatctccaa tgtgttacta aattctatcc aaacttgtgt gtttttcagg acttgaaatc 1980 ggggaagatg attggcagtg ctgaactgtg ttccgggctc tacctccttt catgtggcca 2040 attctcaaac caagtctctc aagcaagttg cgtacagtct cagagtatgt cagagtcttt 2100 caattctgtg tcaaattcta aggtcaataa agatagtgag attataatgt tacactatcg 2160 ccttggtcat cctagctttg tttaccttgc gaaattgttt cccaaattat ttatcaataa 2220 aaatccagca tcttatcact gtgaaatttg tcagtttgca aagcatactc gaacagtata 2280 tcctcaaatc ccatacaaac cttcaactgt tttctctcta gtacatagtg atgtgtgggg 2340 tccctcccgg ataaaaaata tttctggcac tcgatggttt gtgacattcg ttgatgatca 2400 tactcgggta acatgggttt tccttatgaa agaaaagtca gaggtcgggc acatttttca 2460 aaccttcaat cttatggttc aaaatcaatt caattccaaa atacaagtcc tcaagtcaga 2520 taatgcaaag gaatacttta ctagtagtct cagtacttat cttcaaaatc atggcattat 2580 ccacataagt tcttgcgttg acaccccaca acaaaatggg gtggctgaac gcaagaatag 2640 acatctcttg gaggttgccc ggtgccttat gttttcctct aatgttccaa actatttctg 2700 gggggaagct attctcacag ctacctattt gattaaccgt atgccatcca gagtgcttac 2760 ctttcaatcc ccacgtcaac ttttcttaaa acagtttcct cacacccatg ccgcctcttc 2820 tgatttacca ctcaaagtat ttggttgcac agcattcgtt catgtgtatc ctcaaaatcg 2880 tagcaaattt gctcctcgag caaataagtg catttttcta gggtattctc caaccaaaaa 2940 agggtacaaa tgctattctc caaccaacaa aagattttac accaccatgg acgtctcttt 3000 ctttgaacat gtcttcttct atcccaaatc tcatgttcag ggggagagca tgaatgaaca 3060 tcaagtttgg gagtcttttc ttgagggtgt accttctttt cactcagagt caccaaatcc 3120 ttcccaattc gcgcccactg agttgtccac acccatgccg ccatcagttc agccagccca 3180 gcacacaaat gttccttctc ccgtgaccat ccagtctccc atgcctattc aacctatagc 3240 cccacaactt gctaatgaga acttacaagt ttacatcagg aggaggaaaa gacaggaatt 3300 agagcacgga tcacagtcaa catgtggcca atatattgac tccaattcaa gtcttcctga 3360 agagaacata ggtgaggata gggatggaga ggtgttaatt cccagcattg atgattctac 3420 tttgccaatt gcattgagga agggtgttag gagatgtaca gatcatccaa ttgggaatta 3480 tgttacgtat gaagggttat caccatctta cagagcattt gctacttctc ttgatgatac 3540 tcaggttccc aacacaatac aagaggcatt aaaaatttca gaatggaaga aggcagtaca 3600 agatgagatt gagagaggaa gattctgggg ccttgggcag tttacttaaa gagcagtgaa 3660 gttaaggtgt ttgaggggtt acatcctagg gaatcatgca cttgagaaga atgggacgtg 3720 gactatcaca gatttgccgg ttgggaagag gcctgtgggg tgcaagtgga ttttcaccat 3780 aaaatacaaa gcagatggat cagtcgaaag attcaaggct cgtttggtag ctagagggtt 3840 tacacaatcc tatgggatag actatcagga aacttttgct cctgttgcaa aactgaacac 3900 tatcaggatc cttctctcat tggctgtcaa tcaagattgg tgcttgcaac aactggacat 3960 aaaaaatgcg tttctaaatg gggacctrga agaggaagtc tacatggaaa taccacctgg 4020 tttcgaagaa agtatggcaa agaatcaggt ttgcaaactc caaaaatcct tgtacggcct 4080 taaacaatct cctcgagcct ggtttgatag attcacaaaa gcagtcctga agctgggcta 4140 caaacaaggt caggctgatc atactctatt tgtcaagaag tctcatgccg ggaaattggc 4200 catattgata gtctatgtcg atgatattat tctatctggg aatgatatgg gggagttaca 4260 gaatttgaag aaatatttgt cagaagagtt tgaagttaaa gaccttggaa atttgaaata 4320 tttccttggt atggaagtgg ctagatcaag gaagggaatc gtagtctctc aaagaaaata 4380 catactcgat cttcttaagg agaccggtat gcttggatgc aaaccaattg atactcctat 4440 ggatagtcag aagaaayttg gtatcgagaa agaaagtaca cckgtagaca gggggagata 4500 tcagcggctt gtcgggcgct tgatttatct ctcacacact cggccagata ttggctttgc 4560 agtgagtgct gtaagtcaat tcatgcacag ccccactgag gaacacatgg aagcagtcta 4620 caggattctt agatatttaa aaatgacacc agggaaaggc ctattcttca gaaagacaga 4680 gaaccgtgac actgaagtat actcagatgc ggattgggca ggaaacatca ttgacaggcg 4740 gtccacttct ggatattgtt cttttgtctg gggaaatctt gttacctgga ggagtaagaa 4800 gcaatcagtt gtagccagaa gtagtgcaga agctgagtac agagctcttg cacagggaat 4860 ctgtgaaggg atttggataa aaagggttct tagtaaattg ggacaaacga gttcatctcc 4920 aattctgatg atgtgtgata atcaggcarc tataagcata gcaaagaacc ccgtgcatca 4980 tgacaggacc aagcatgttg agattgacag acactttatc acagagaagg tgactagtga 5040 gacggtcaaa ttgaactatg ttcctaccaa gcaccaaacc gcagacatcc tcaccaaagc 5100 tttacctagg cctaacttcg aagacttaac ttgcaagctg ggattatatg atatatattc 5160 tccagcttga gggggagtgt tgaaataa 5188 // ID TST1 repbase; DNA; DCOT; 5060 BP. XX AC X52287; X52387; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Potato DNA for copia-like transposable element. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Copia-like element; TST1; retrotransposon; KW unidentified reading frame. XX OS Solanum tuberosum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum. XX RN [1] RP 1-5060 RA Brisson N.; RT "TST1."; RL Direct Submission to Genbank (02-APR-1990)Brisson N., Universite RL de Montreal, Departement de Biochemie, P.O.Box 6128, Station A, RL Montreal, Quebec, H3C 3J7, Canada.. XX RN [2] RP 1-5060 RA Camirand A., Brisson N.; RT "The complete nucleotide sequence of Tst1 retrotransposon of RT potato."; RL Nucleic Acids Res 18, 4929-4929 (1991). XX RN [3] RP 1-5060 RA Camirand A., St-Pierre B., Marineau C., Brisson N.; RT "Occurence of a copia-like transposable element in one of the RT introns of the potato starch phosphorylase gene."; RL Mol. Gen. Genet 224, 33-39 (1990). XX DR GenBank; X52387; Positions 1 5060. XX SQ Sequence 5060 BP; 1625 A; 862 C; 1055 G; 1518 T; 0 other; tgttgaatga gtaggcagat ttagtcataa ctgctccacc attgagctgc cagatttgat 60 tataactgct ccacaaataa agctggcaga tttgattaga atctgctcct gtaaatatgg 120 gattagaata tattattcta ggaaaatagt ttagaggaaa tcctttaatt caaggatttc 180 ctaagaatta gggattgatt agtttatttg gtctttactt gttctcttat aaatactgta 240 caaacacatc gaataaaatt acattttgca gtatctaaac tttcatggta tcagagcgga 300 ccatttcccc taatatcata tggataaaac agcctttcac agagacgatc tttctgaaac 360 atcaacagga acgtcctgca aaaaatctga tgacacaagg aggcaatgct tctcacatgc 420 ccttccagtt aacttctcat cgattaaatg ggaagaacta tctggaatgg gcacagtccg 480 taaagcttgc aatcgatggc cgtggaaagc tgggacatct gaccggagag acaaagaagc 540 cgggagttgg agagatcaga gaattcactc gtgattgctt ggttaataaa ttctatggaa 600 ctagtcatag gtaaatctta tctctttttg cccactgcca aggatgcatg ggaagccgtt 660 agggagtcat attctgattt agaaaatgcc tctcaaattt tggagttaaa aattgaacta 720 tggcaagcta agcagggtga gaatgaagtc actacttatt ataatgaaat ggtgtccttg 780 tggcaggagt tagaccagtg ttacaatgat gaatgggagt gttctatgga tagtgtgaaa 840 gccaaaaaaa aggaagaaaa tgagagagtt tacctttttt tagcaagatt aaaccgagag 900 tttgacaagg tcaggtcgcg aatcctagga aaaaatcctc tgccccttcg tgaaactttt 960 tctgaaatta ggacagagga aactgggagg aaagttatgt taaaacctga tttaaatgtt 1020 gaactaaaac ctgttataga ctcttcagct cttgtaacag tgaagaatga agaggacaaa 1080 aagaaaaagc cattgtgtga tcattgcaaa aaatattggc acacccgtga aacgtgttgg 1140 aagattcatg ggaaaccact aaactggaag aacaagggag ttgatgatca tggctttcaa 1200 tctcaaaatg gtcaggccct ccaaacaact tattttgatc aggggcaaca accttctcca 1260 gaaacgtctc tatttacaag ggaacaattg gaaattctgc acaaactcct tcaatctcca 1320 caatttcgtg caaatgcacc aaaatcttct aatccttctt gttcttttgc tgaaactgta 1380 tcatctgtat cgtctgcttt tcttagtgtc aattccaacc aaatagattc ttggatcata 1440 gattcaagag ctagtgacca catgactggg agtttccgtt ttttctctac ttacactcct 1500 tgtgcaggga acagtaaaat caagatagct gatggttcct tctctgcaat tgctggaaaa 1560 ggaactatta aacttatcac catctcttgt acttcatgat actcttcatg ttccaaagct 1620 ctcttgtaat ctagtttctt tccgtaaatt aacccgttct cttaattgtc gtgttatttt 1680 ttattccgat ttgtgtgaat ttcaggaaaa ggtctcgggg aagatgattg gcagtgctag 1740 agaatcagga ggtctttatt ttcttgacaa cgggaacaac tcactacagc tgaatcctat 1800 ttttttaaac tctacttttg ttttgaataa agtcatgctt tggcactatg ggcttggaca 1860 tccaagtttt tattatttaa gacatttgtt acctcagtta tttagaaata aaaatccatc 1920 cttattccaa tgtgaatttt gtgaaatggc taagcatcat gtagatactt cttttccttc 1980 tcaaagatat caggcttcaa aaccttttac aatgattcat agtgatgttt ggggaccgtc 2040 tagaatttca acaatgtttg gaaaacggtg gtttgtaact tttattgacg atcatactag 2100 attgagttgg gtttttttat tgaagggcaa atctgaggtt aaaaatgtgt ttgagacttt 2160 ccatgtcatg gtggaaacac agttcaatga gaaaatcaag atttttcgga gtgacaatgg 2220 ccgtgaattt tttaatgaac aattaggaag ttttttcaga aaaactgggg tagtacacca 2280 aagctcttgt ccagatacac ctcaacaaaa tggtatcgcc gaaagaaaga atagacatct 2340 tttagaggca acgagagctt taatgtttac tagtaaagtt ccacaacacc tttggggaga 2400 ggctctcttg actgccactt accttattaa tagaatgcca tctcgccctc ttgaatttaa 2460 gacacctttt aaagttttca gagaaagttt tcctagttct aggttaacta cagatctacc 2520 tctgagagtt tttggttgta caacatttgt tcatgttcat aatcgtagta aacttgaacc 2580 gcgggctaag aagtgtattt ttgtagggta tgccccaagt caaaagggat ataagtgtta 2640 tgatccacat gctaggaaga taattgtcac aatggaccta actttctttg agtcgcaact 2700 ctattttact actcatcttc agggggagta tcatttaggt gaagattcat tttttgtgat 2760 attgaggaaa ctagatatca agcaaatgag gagcctaata ttacaaataa atactgatgt 2820 gagagatgta ggggaagata taaataagtg tgatccaaga gatgataagg accaaagtga 2880 cttaatgata aaaactcaga aattcaaacc tgaacctgta gcgccttcaa atgacaaaaa 2940 taaaaatggg aatagagaac aaaaaacaga aatgcaggtg tattcgagaa ggaaccgaac 3000 tcaagaaaaa aggaccgaag attctcaaca ctgccaaaaa tcagtcccac aagaccttac 3060 tgtaattcaa ggtactcttc caactgattc tatttctaat tccttagatc tagatctacc 3120 tattgcgaaa cgcaaaggtg ttagaaatac ttctaaatat cctatttcta tgtttgtgtc 3180 ctacaaaaag ttgtctccta gttattcagc ctttacttca caactctcta gtgtggagat 3240 tccaacaaat gtgcaggatg ctctacaagt tcccgagtgg aaggaggcta ttttggagga 3300 attgcgagct cttgaaaaaa atgagacatg ggagttagtg gatttacccg agggaaagaa 3360 accagtgggt tgtaaatggg tgttcaccac caaattcaaa tcagacggat ccttggaaag 3420 gtataaggcc cacctagtag ttaaggatca cacagacata tcgatgcatg actatctcga 3480 gacgtttgct ccagtagcta agctaaactc aattagagtt ctgttgacaa tcgcagtaaa 3540 tctcgactgg tctctttagc aattggatat gaagaatgtt ttcttgaacg ggcacctaga 3600 ggaagaagtc tatatggatc ccccaccagg ttttgaaggg aagtacaagt caaaaatatg 3660 caggcttaga agatctcttt atggtctaaa acaatctcca agggcttggt tcgaaaggtt 3720 tactcaattt gtgaaaaggc aagggtatgt gcaaggacaa gcagatcaca caatgtttac 3780 tcgacattca ctagaaggaa aaacaaccgt tcttatagtg tatgttgacg atatcatcct 3840 cacaggagat gatgtggttg agataaaaaa tctaaaggaa cgtcttgcct cagaatttga 3900 gataaaggac ttaggcccgc taaagtactt tcttggcatg gaggttgcac gatcgaagaa 3960 aggaattata gtgtcacaaa ggaagtatgt tcttgatctg ttaaaagaaa caggaatgag 4020 tggttgtaga ccaactgaaa ctccaattga tccaaatctg aagtttgtaa aggaaggaaa 4080 attgattgat aagggtcaat atcagagatt ggtaggcaag ttgatttact tgtcacatac 4140 tagacctgat atttcctttg ctgtgagcct agtcattcag ttcatgcatt atccacgaga 4200 agaacaccaa gaagctgtgt atcgaatcct aaggtatcta aagagttcac ctgggaaagg 4260 gttgttcttc aagaagaatg agcaaagaag tcttgaggct tatacggatg cagattgggc 4320 tggttcatct attgatagga ggtctacatc tggatattgt acatttgttt ggggaaattt 4380 ggtgacatgg agaagtaaga agcaaaatgt ggtggctcga agtagtgctg aggctgagta 4440 tcgatccatg gctctcggaa tttgtgaaat attgtggctc aagagatttt tggaagaact 4500 aagaagacct gtgagttttc caatgaagtt gtattgtgac aataaggctg ccataagcat 4560 tgctcataat ccagttcaac atgatagaac aaagcatgtt gaagtgacag acacatcatt 4620 aaaaagaaga ttgaagatgg aagtgtgtgc attccttttg ttccaacaac agaacaagtt 4680 gcaaatattt tcacaaaagg tcttttcaga actacttttg agtcctttgt tagcaagtta 4740 ggcatgtttg ctatttacat gccgacttga gggggagtgt tgaatgagta ggcagattta 4800 gtcattatct gctccaccat tgagctggca gatttgatta taatttgctc cacaaataaa 4860 gctggcagat ttgagaatct gccctgtaaa tatgggatta gaatatatta ttctaggaaa 4920 atagtttaga ggaaatccct taattcaagg atttcctaag aattagggat tgattagttt 4980 atttggtctt tacttgttct cttataaata ctgtacaaac actacgaata aaatatactt 5040 ttgcagtatc taaacattca 5060 // ID TTO1_NT repbase; DNA; DCOT; 5300 BP. XX AC D83003; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 09-APR-2007 (Rel. 3.02, Last updated, Version 2) XX DE Tobacco DNA, retrotransposon Tto1 sequence encoding an ORF DE (1338AA), complete cds. XX KW Copia; LTR Retrotransposon; Transposable Element; TOBAA; TTO1_NT; KW Tto1; retrotransposon. XX OS Nicotiana tabacum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; OC Nicotianeae; Nicotiana. XX RN [1] RP 1-5300 RA Hirochika H., Otsuki H., Yoshikawa M., Otsuki Y., Sugimoto K., RA Takeda S.; RT "Autonomous transposition of the tobacco retrotransposon Tto1 in RT rice."; RL Plant Cell 8(4), 725-734 (1996). XX RN [2] RP 1-5300 RA Hirochika H., Otsuki H., Yoshikawa M., Otsuki Y., Takeda S.; RT "Autonomous Transposition of the Tobacco Retrotransposon Tto1 in RT Rice."; RL Unpublished (1996). XX RN [3] RP 1-5300 RA Hirochika H.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (10-JAN-1996). Hirohiko RL Hirochika, National Institute of Agrobiological Resources, RL Molecular Biology; 2-1-2 Kannondai, Tsukuba, Ibaraki 305, Japan RL (E-mail:hirohiko@abr.affrc.go.jp, Tel:0298-38-7006, RL Fax:0298-38-7408). XX DR GenBank; D83003; Positions 1 5300. XX SQ Sequence 5300 BP; 1623 A; 944 C; 1315 G; 1418 T; 0 other; tgttagtttt tccaacaatt atggtgatgt atgggagagg taagcaatga tgcaactctc 60 cttagtgaga taagcaatga tgcaatgagt ggtaggtgag atgagaatat tgcaaattga 120 tccttcttgg taggtgagat ttgcactttt ggtccctatc tcaaaactat aaataccccc 180 ttccatttca ttgtataaca caccaaaaaa tatatcaaaa ctcaagaaga aagagtttga 240 gagggagaga gatatagttc ctttaggaat gtttcctaac aggggagtga caaaatagtg 300 agtagaaata ctagtcgggt atttttcggg aaacactttt gtgtgcgcca ctattttggg 360 tagagctcag gaattgttgt acctccaaat tattgaggaa gtctctcttt gtatgcctgc 420 taaatgtttt agtggaagtt ggtgtcggat ttgtggacgt agcctaaacg ttttaggtga 480 accacgttaa atattgtgtc atttattttt ggtttcgttg atcatttatt ttattccgct 540 gtgcagtagt gtttagtgcc accggatcct aacaagtggt atcagagctt tggttagagt 600 actattcata cgtacgagta ctattcatcc atacgggcac tattcatatc cacggttact 660 attcaccgtc ggattttttt tttagattgc aaaagtctgt caaattctga tctaaatgga 720 ggcgaggaca agcaagatgg tcaacctgaa tggcacaaat tatcacttat ggagaaacaa 780 gatgaaggat ctcctgttcg tgacaaagat gcacctgccg gtgttcagtt ctcagaaacc 840 tgaagataag tcagacgagg actgggaatt tgagcacaac caagtgtgcg gctacatacg 900 gcaatttgtt gaagacaatg tgtacaacca catttctggt gtgacacatg caaggtcgtt 960 atgggacaag ctcgaagagt tgtatgcctc taaaacaggt aacaacaaat tattttactt 1020 gacaaaatta atgcaagtaa aatatgtaga agggacaact gtggcagatc accttaatga 1080 aatacaaggg attgtcgacc agttgtcggg aatgggcata aagttcgatg acgaggtact 1140 tgctcttatg gtgctggcaa cactcccaga gtcatgggaa accttgaagg tttcaatcac 1200 caattctgca cccaacggtg tggtaaacat ggagacagtc aagagtggca ttctgaatga 1260 agaaatgaga cgccgatcac aaggaacatc ttcttcacag tcagaggtgt tggctgttac 1320 gaccaggggg agaagtcaaa ataagagcca gagtaacaga gataagagca gaggtaaatc 1380 caacaaattt gcaaatgttg agtgccatta ctgcaaaaag aaggggcata tcaaaagatt 1440 ttgccgacag ttccagaatg accagaagaa gaacaaaggc aaaaaggtga agcccgaaga 1500 aagcagtgat gatgaaacga actcctttgg tgagttcaac gttgtctacg atgacgacat 1560 tatcaatctg acaacccaag agatgacctg ggtgattgat agtggggcta ccattcatgc 1620 gacgccacgg agagaactct tctcatctta cacacttgga gactttggtc gtgtaaagat 1680 gggaaatgcc aatttctcaa cagttgtagg caaaggtgat gtttgcctag agaccatgaa 1740 tgggatgaag ctacttttaa gagatgtcag gcatgttcca gatatgcgcc tgaatctgat 1800 ctccgtagac aagctcgatg aggaaggtta ctgcaatacc ttccataatg gccaatggaa 1860 gctcacgaag ggctcattga tggtggcgcg gggcacgaag cagtcaaagt tgtacgtgac 1920 ccaggcgagc atctcccaac aagttataaa tgttgcggag aatgatagca atatcaagtt 1980 gtggcataga cgtcttggcc acatgagtga gaagtcaatg gcgcgtttgg taaagaagaa 2040 cgccttacca ggtctaaacc agatccagtt gaagaagtgt gctgactgtt tagctgggaa 2100 acaaaacaga gtttcgttca aaagattccc tccttccaga aggcaaaatg tgttggatct 2160 ggtacactca gatgtatgtg ggcctttcaa gaagtccctc ggtggtgccc gatatttcgt 2220 gacctttatt gatgatcatt cacgaaagac atgggtatac acgctgaaga ccaaggatca 2280 agtgtttcaa gttttcaaac agtttctgac cttggtggaa agagagactg gtaagaagtt 2340 gaagtgcatc cggacagaca atggcggtga ataccagggt caatttgatg cttactgtaa 2400 agagcatggt attcgacatc agttcacacc tcctaaaact ccccagttga atggcttggc 2460 tgagaggatg aacagaactt tgatcgagag aaccagatgt ttactctctc attcaaagtt 2520 accaaaggct ttctggggtg aagctctagt tacagcagcc tatgtgctga accattcacc 2580 ctgtgtccct cttcagtaca aggctccaga aaagatttgg ttaggaagag atatctctta 2640 tgatcaatta cgggtatttg gctgcaaagc ctatgtccat gttccgaaag atgaaaggag 2700 caaacttgat gtcaagacaa gggagtgtgt attcatcggc tatggtcaag acatgcttgg 2760 ctataagttc tatgatccgg tggaaaagaa gctcgtcagg agtcgagatg tcgtgttcgt 2820 tgaggaccaa acaattgaag acattgacaa agtagagaag tccactgatg attctgctga 2880 gtttgagttg cctccaacag tggtgccgag acaagttgga gatgatgttc aggataatca 2940 acctgaagcc cctggtcttc ctaatgaaga tgaactagca gatactgaag gtaacgagga 3000 caatggtgat gatgatgcag acgaggagga tcaacctcaa ccaccaatcc tcaataaccc 3060 tccttatcac acaagatctg gaagagttgt gcaacagtct accagatatt ctccacatga 3120 gtatgtgtta ctcactgacg ggggagaacc cgacagcttt gaagaagcta ttgatgatga 3180 acataaggag aagtggatag aagccatgca agacgagata aaatccttgc atgagaacaa 3240 gacgtttgag ctggtgaagt tgccgaaagg caagagagct ttgaagaata agtgggtgtt 3300 caagatgaag catgatgaac acaattccct tccgagattc aaagcaagat tggtcgtcaa 3360 aggtttcaat caaaggaaag gcattgactt tgatgaaata ttctcaccag ttgtgaaaat 3420 gacctcaata cgcacggtgc tgggattagc agcaagcctc aacctggagg ttgaacagat 3480 ggatgtaaaa actgccttcc tacatggtga tttggaagag gagatataca tggagcaacc 3540 agacggtttc cagcaaaagg ggaaagagga ctacgtttgt agattgagga aaagcctcta 3600 tggcttaaaa caggcaccaa ggcagtggta caagaagttc gagtcggtga tggggcaaca 3660 cggctacaag aagacaactt cagaccattg tgtgttcgct cagaagtttt ctgacgatga 3720 tttcatcatc ctattgctct atgtagatga tatgttgatt gttggccgga atgtttccag 3780 aattaatagc ttaaaagaac agctaagcaa gttcttcgcc atgaaagact tggggccagc 3840 aaaacagatc cttgggatga ggattatgcg agaccgagaa gccaagaagt tatggttgtc 3900 tcaggagaag tacatcgaga aggtacttca acggttcaac atggagaaaa ctaaagcagt 3960 tagctgtcct cttgctaacc actttagatt gagcaccaag caaagcccgt caacagatga 4020 tgagagaaga aagatggagc ggattccata tgcttcagca gtaggaagtt tgatgtatgc 4080 catggtttgt acacggccag atatcgctca cgctgtagga gtggtaagta gatttctttc 4140 taatccaggt aaggaacatt gggatgctgt taagtggatt ctcaggtatc ttcgaggaac 4200 ctccaaacta tgcttatgtt ttggagaaga caaccctgtg ttggttggct atactgatgc 4260 agatatggcc ggagatgttg attctagaaa atcaacttca ggatacttga ttaacttttc 4320 agggggagct gtgtcatggc aatcaaagtt gcaaaaatgt gttgcattat caactactga 4380 agctgaattc atcgcagcaa cggaggcttg caaagaattg atatggatga agaagttctt 4440 aactgaactt ggattttcgc aagacggtta tcagttattt tgtgatagtc aaagtgctat 4500 ccaccttgcg aagaatgcct cattccattc cagatccaaa catattgatg tgagatataa 4560 ttggatcagg gatgtgttgg agaagaagat gttgcggctt gaaaagatcc atacagacga 4620 aaatggatcg gacatgttga ccaagacttt accgaaaggg aagtttgagt tctgtagaga 4680 agctgcaggg atagtggatc caccatatag ttggaagggg gagaattgtt agtttttcca 4740 acaattatgg tgatgtatgg gagaggtaag caatgatgca actctcctta gtgagataag 4800 caatgatgca atgagtggta ggtgagatga gaatattgca aattgatcct tcttggtagg 4860 tgagatttgc acttttggtc cctatctcaa aactataaat acccccttcc atttcattgt 4920 ataacacacc aaaaaatata tcaaaactca agaagaaaga gtttgagagg gagagagata 4980 tagttccttt aggaatgttt cctaacaggg gagtgacaaa atagtgagta gaaatactag 5040 tcgggtattt ttcgggaaac acttttgtgt gcgccactat tttgggtaga gctcaggaat 5100 tgttgtacct ccaaattatt gaggaagtct ctctttgtat gcctgctaaa tgttttagtg 5160 gaagttggtg tcggatttgt ggacgtagcc taaacgtttt aggtgaacca cgttaaatat 5220 tgtgtcattt atttttggtt tcgttgatca tttattttat tccgctgtgc agtagtgttt 5280 agtgccaccg gatcctaaca 5300 // ID EnSpm-5_VV repbase; DNA; DCOT; 21507 BP. XX AC . XX DT 11-JUL-2008 (Rel. 13.07, Created) DT 11-JUL-2008 (Rel. 13.07, Last updated, Version 1) XX DE EnSpm-5_VV, an autonomous DNA transposon - a consensus sequence. XX KW EnSpm; DNA transposon; Transposable Element; TIR; CACTA; KW Cactavine-5; EnSpm-5_VV. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-21507 RA Benjak A., Forneck A., Casacuberta J.M.; RT "Genome-wide analysis of the cut-and-paste transposons of RT grapevine. PlosONE: submitted."; RL Repbase Reports 8(7), 757-757 (2008). XX DR [1] (Consensus) XX CC EnSpm-5_VV (Cactavine-5 in [1]) is an autonomous element. Its CC individual copies are >90% identical to the consensus sequence. CC EnSpm-5 contains short TIRs which are flanked by 3 bp-long TSDs. CC Downstream of the TPase gene (region 15815-19903) is another ORF CC encoding for a ULP1-like protein similar to CAN79821.1. Although CC ULP1 (Peptidase C48) -like proteins are usually found in Mutator CC elements, our study shows that such proteins are common in CACTA CC elements as well. This feature is not restricted only to Vitis as CC similar examples were found in rice [1]. XX FH Key Location/Qualifiers FT CDS join(11886..14359,14445..14550,14643..15284) FT /product="EnSpm-5_VV_Transposase" FT /translation="MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQSGIR FT CPCMRCGNLIHHTPNKIREHMFFNGIDQSYHTWYWHGEAGPTSRQPTEMAQ FT CYDTMDCGDVASTVEMVHVIDDEFMTDPMSFKKLLEDAEKPLYPSCIKFTK FT LSALVKLYNVKARYGWSDKSFSDLLQILGDMLPVNNEMPLSMYEAKKTLNA FT LGMEYKKIHACPNDCILYRNELNDASSCPTCGMSRWKVNKAGARNTKRIPA FT KVLWYFPPIPRFKRMFQSPKIAKDLKWHAQGRENNGKLRHPVDSPTWQLVN FT QMWPEFASDCRNLRLAISADGINPHSSMTSRHSCWPVLTITYNLPPWLCMK FT RKFMMLSLLISGPRQPGKDIDVYLAPLVDDLKALWEVGVKAYDAHQREFFT FT LKAILLWTINDFPAYGNLSGCTVKGYHACPICGEETNSHWLKHGNKNSYTG FT HRRFLPCNHPFRKQKKAFNGEQEFRLPPKELTGDEIFTKVDMIHNSWGKKK FT KVKQCESFANPTSCWKKKSIFFELEYWKYFYIRHNLDVMHIEKNVCESIIG FT TVLNIPGKTKDGVKSRLDLLEMGLRPGLAPTFGLKRTYLPPACYTLSRKEK FT KIVLQTLADLKVPEGYCSNFRNLVSMEELKLNGLKSHDYHALMQQLLPVAI FT RSVLPKHVRYAITRLCFFFNALCAKVVDVSRLNDLQQDIVVTLCLLEKYFP FT PSIFDIMLHLTVHLVREVRLCGPVYMRWMYPFERYMKVLKGYVRNHNRPEG FT CIAECYIAEEALEFCTEYLSGMDAIGIPSSMKDEWKCGKPLLGGRAITIHD FT YKLVEQAHHYVLQNTTIVQPFIDEHMKYLKTKYPRQSKRVKWLEDEHVRTF FT SYWLRKNVSDDISKKEPIEKELKWLAQGPRQQVLTYPGYIINGCRYHIKDR FT DEARVNQNSGVSIVASTMQIASSKDKNPVLGDMCFYGIVTEIWDLDYNMFN FT ICVFKCDWVDSKNGVKVDELGFTLVDLSKIGHKSDPFILATQAQQVFYVED FT QVDPRWSIVLSRPKMELFDIEGDDNIADNCMEHHPFANGMPNIKSFDEVED FT YDEICMRTDCEGIWIEH" XX SQ Sequence 21507 BP; 7575 A; 2964 C; 3486 G; 7482 T; 0 other; cactacaaga aaaagagtca ttgttgacat atattatctt tacttaaagt agtatatgtc 60 aatatttttt atttaaatgg gcaactatga catataaaac ttagttaaaa gaaataatga 120 catatatgaa ttccagttat tattccatga cctatgacga tgcaaccttg acagagaatt 180 tataagtcaa tataaaatta atatatttgt atgtcaaggt agctaaataa aggcaataat 240 gacatatatg gaatttgcta aaattttctt taatttatag taatacaatc ttgatagaaa 300 aattataagt caatatatat agttaaaata ttcgtatgtc aaggttggta aaagctatct 360 tgacaaataa tttataagtc aatgtaattt catttataaa tctattaagg ttatattagt 420 aaatattgaa aatctcactt ctcatttttt ttcttttaat tcttttattt ttcttttaat 480 tctatctaga cccattccca tctagaagca acttgaaaga aaatcctaag aggccaccat 540 taaaaatttt gtgaaaagtt aaaatatttt tcatgaaaat ttattggatt agatatttat 600 tctccatgca aatatatatc ctttataggg tttaaatttt tgttttttgt tttttttttt 660 ttttgcattt tttatgacat ttattaaatg atgtaacatg aattcctttt atttggttta 720 ttattgcaac cataataatt atgaaaaaat tcattatagt attttaggaa aatttggaac 780 ttaaaaaaaa gtggtcctta attattttag gaaactatgg tactgtttag aagtaccatt 840 atataattca tttagacaac aagagaagac ataaaaattg tatatcaaat ttcattaatt 900 ataattttaa gataatgaaa ttgttttata tttatgcata aaaagttgga aataaaatat 960 gtaattttaa ttctctctta tctaagtcct aaggatgctt tgatctcata atatgatata 1020 aaccactggc atgaggttgt ccataatcta accttaaata tgaatgaaaa tttctttgat 1080 cttgagctcg ggttgtgcaa ggaatgctta cttaaggttc aagaacatta atcaaaggaa 1140 catgaaatta aagccaagtg aaaggcccat gaaatcttct tgaagaaata attaaaaaag 1200 agaataacaa ttaatgcaac aatgtttgtt ctcctatagt gcatctgtga catatcttca 1260 agtttagaag cgacttgaaa taattgttgt gtcagttaaa gaaaaacaca agattatata 1320 tatatattca taaaactgaa aatgtggctc atgaggtgga gtgtccaagg ttatttaatt 1380 cctcacttct atattaacca aaatttgata tcatatgatg taggagtcta ccaatgagaa 1440 aaaacccaaa atggaaattt gttgaaatta actattttgt ttttccatta tgcatccaag 1500 atgttatgtt agaatacaag atgcaagagc ttagcaaact acaaagcttt ttttgtcatt 1560 tttcgttgta ttgatgatca tttgttatga atttgtaaaa tataaacaaa attaaatata 1620 caaagaaaca aatattaata tagataacat ctatagagtg agagttttga cccaaaatag 1680 tccattgaaa attttttttt tcataaaata aacttatttc caaaataata ctcaatctaa 1740 tgtgtctgta tcacataagt tgtcatgcca taaaattgta attggtgact acagttttat 1800 ttttctaaaa tggttagaaa ccgtagtcac caaccacagt tttaacttta agtttaaagc 1860 cgcaattagt gactacggtt ttgaattctt ttaaaaatga tcaaaaccat agtcaccaac 1920 tacgacttta acttatatat atatatatat tattatcttg tttcatttaa aatatttaac 1980 tttaattttt ttaaataaaa attatattat tttgatttta aataaactta tctcattatt 2040 taaaaaatta ttagtatatg aaattaaata attgatattt ttaatatggt ataaatttgt 2100 tatattttat tttattaaaa caattgacac tatatctaat ataaatttaa ttaattaatt 2160 aaacttaaat ataaataaaa taatgataaa ttatatttat ttaaaataaa taaattatga 2220 aagcctattt atgaacttaa ataaaaatat gataatattt tcataaatta tgatcctatg 2280 gacatgatgt aatattatga actaaaatta aaatataata aattttaaat ttaaattgaa 2340 cttatataga catgatatta tataccactt agatatggta tataaaaaat tattaattaa 2400 caaaagaaaa caagacatgt tgaccacgga ttattaaaga acacatggaa aagtggaatg 2460 tacaagttgc accacatacc gaaggctaat aaaaaattat ttctaaatcg taattatttt 2520 tttagattaa aaccaagtga atggattgta tcttgtgcct tggtgttttt ctcaggtcaa 2580 cttgatttat accatccaaa accacggaat ttgaatagtt caattaagat aaaattctga 2640 catattggaa tcatatcaac taatgatcaa cttaacgtaa gtaaatgaaa cccatttttc 2700 ggcttactgg acgtgaccct ttttagttcc acaactaaat ttttagttga gataatttgc 2760 taatcctttg aatagtaggc cccttataga acacaccaat cttctacaaa taccggtaag 2820 aagaaatctt agctcatcat tgccacttcg atatgaatgg acataatgaa gagaggcaag 2880 ttctcattaa gatacaagca ttcaatgcct tagaatttaa gctaaaagag gcgccatggc 2940 tagatttgag gtcatgtact tgagagccaa atctgataaa agaaacaaat tgagaaattg 3000 aaatgggggt gacatacctg aaatcatttt ttctactaat atcagaggcg aagtgccttc 3060 agatgcagta aaatgccttc tttcatggtc aactgagttg tcctcatcct tagctgctaa 3120 acaccatagc gtttaaaagt ttctttgttt gtattttcct tttctcaata tcacttcatg 3180 tatagcccgt gtttaagttg aaattgagaa tgcaagtttt tcccttgtaa aattttttta 3240 tgaaatgtag aagatagcat aaccctttct ttgcaaatta ttcctccaca tacaagaaat 3300 ataaatacgt agtctaatgc cctggctgcc cataaaccag atgttattat atatcaataa 3360 atctaaccat ggatattcat caaccaacat gtaaatttga aattaacatg acagtctaca 3420 gtttcatgac aatggtactc caaaaaagca aggcgggaaa actaatatat aataattaac 3480 cgagtaacta gtacacatgc tatgttattt tccaaatgat caagtccttg aatccaaggc 3540 catgatggtg ctaagattca tggggttcat gtacatggtt gagctggtca tgatctgttg 3600 tactatcagt ctgtttacct tttcggatgg atggaatgca tcccaaaacg catactggcc 3660 tcagttgggg cacaggtttg agagcaccgt gcaaagtccg agcccattgt tgggtccttg 3720 cccacaagat gctatctttg atgttgtaaa ccctatccaa tcataacata catgaataat 3780 gccattacat ttagtcctac tatgattaac aaattatctt ttaatttgtt gcatgcctaa 3840 ttaaattcca agcataccct tttcatgatg gaagtctttt tcaaaaagaa ggaaaagaga 3900 atcaatatat agttacatat atagaaacta acgtaccaaa tgcctaagga tcagttatga 3960 agtccgtatg catttcttgt gtattagcag cgatgaaaac atctgcatga aactttttat 4020 tgagtcctta tagcatctga atgagttgtg ggttgaacag ggctgaagct tgctgcaatt 4080 tagctgcgca ctctccgttt ttgctcctca tgacatgttt tgctggtaca caccccattg 4140 gtctagtgcc cgtcacaaaa acccttcgtg ttccaagctt atatagcctc tgcaaccata 4200 agtttagacc atacatataa gtcactaaaa tatataacat taatacattg tattttgtta 4260 gaaaatggga caacccaacg cacaaaatag taatagtgct tatttataaa gtttacatgc 4320 attggaaaag gctctaatgt aacaagtgtc tctacctacc aaaacaagtc tcttgtgata 4380 gactatcata tatgcaatac cataatgcat ttgccctcaa ctcatcccca attcctcatt 4440 agatttaata gtgaatattt tatgcagatt aggccaaaat gtaacacatg ctggggagaa 4500 ttaccattag aatttttcgg cacttagaga tgagatagca aacataattg ggaagagtaa 4560 attggcgaga tcttgtagag ttgggcacca agtagtagtt gttgacaaag tcgtttctgc 4620 ctagagtgat gaggacgagt gctttaaaca aaaggaaaca agacatgttg gccacagatt 4680 attaaagaac acctgggaga agtggaatgt acaagttgca ccatgtatgg aaggctaata 4740 aaaagttatt tctaaatagt aattattttt ttagatttta aacaaaagga aacaatacat 4800 gttgaccaca gattattgaa gaacacatgg gagaagtgga atataaggat gcaacacata 4860 ccaaaggcta ctgcctgaaa atgatgacgg accaagcttg aaaaagaaag tgaagcacag 4920 ggttgtctct gaagaaatta ttagttggaa aaacgcactc aaaatctcgt tagtaatagg 4980 atatcaccct tgagattgtg gaccaaaagc gagatggatg gactctccct atgtcctcat 5040 ctttcctttt ccggttcaag gtggccacct caacgccatg cttaaactca cccaaatact 5100 gcgtgttgag cctccagctc aaataccatt gccacaattt ttttaatcca tacaacttac 5160 aagaaaaaca aaagcattcc aaattctagt aaatgacatg caaaaaaaaa gtaaagaaaa 5220 caacataaaa tcacaaacgc acaaacaaaa tgattcaaat ggttcaccca ataaagttgt 5280 attgataggc aagggcagtg aacaaacttt accaattata taaaaaaatt tacctcttct 5340 agaaaaccca ccaaaaagca cccataacca taaagcttga aacgaaaact attttaattc 5400 aattgattta cctcaaagtc cacaaaaatt aatatctaag acaagagctg aacacttgtt 5460 gcatgtcaga ttccccacgg tgagttctga tggagttgac aactgtgttc tacatgatga 5520 gctaaaaaac gtttgggtct agccatcccc tccacctctt cacgaatcat ttgttgcata 5580 ttgaaactgc tatggtgttt agtttgaagg aaagaagaag acgacatcac aatgagacta 5640 ggtgctgctg atctaaatgt gcatgtgtgg agggataaag agggagaatt aatggacggg 5700 aagcatggat atcattatga caaatgggtt ttgggcagcc caaagcatgg gatgtgtcag 5760 aagaaagacg cttgatgtct gatgaaggtg gtagggatag gtttttttat tgcctaaaga 5820 atatgttgtt gcagggtatg gcatggtcta aagtacttgt cttgagcaac taaaaataag 5880 ctttaaagag agagtggtat ggcagatacg ttttaagcca tctgaaatat gagcagtagc 5940 aagtagtaac aaagcacaat tgatgggtga gagaaatggg aagctaggct aacgacctat 6000 ggagactatt gatggacggt tgatgcatgg gttagtttaa ggtgtgtttg gtatgtttta 6060 aattagatga aatctaagta taaatatttc ataaaatcat acaagttgca tatttgtttt 6120 ttatttagaa aattaattta ttttatgttt tgatatgtga attttaatat catataaact 6180 ttacttatga ttcatgatat ccaaaaataa taactatttt cgcatgttta ttataaaaaa 6240 aaaacacatt ttgttttata ttttaagaca tgaattagat aaccataata aactcaaatt 6300 ttaattttgt ttttggttca taaagtatta aaaagagaat tgctttgata tattaataaa 6360 ctaaaatctt tattttgatt taggattcct gtgatgttaa aaaattaaat tattttatca 6420 taaaataaag ctttgaatat atatttaata accttaacat attatttctc aatttaatca 6480 ttcaatatat tgattaatac ctcaatttct ataatttata agataaagtt aacaaaaaaa 6540 cttgaatctt attaaatcat tcttaaaaaa gaaaaaaaaa agaaaaaaaa gaaaaaactc 6600 attccaattc attatcaaaa ccttattgta ttttatattt ttaaagaata tgatatcaat 6660 tattatatta ttttaaaaca tgaatttatt tgtaagaatt aaggttttag aattctaaac 6720 aaacctaaat atgttgtaaa tcaataataa taaaaaataa aaataaaaac aaagtcctaa 6780 actaataatt aagggtcact acaaacaaaa tagggatcca cttagtctct ccaaaatatc 6840 taattgaaaa tccaaaacta gtgatcaata tagtcttagt ggaccatcaa ttaataagag 6900 ctaaacacaa ctcaaaaaat gaccacaatt gcacactaaa gcatcaaagg atgtaggagg 6960 acaatcctat atgaaatgtg tcaagagaac aaaatagagg gtttataata ttctaagaaa 7020 aaaaaaaaca cattaccata tacataatca ctttgtaaaa aatgttttca ttaggattat 7080 aattgaaatg ttgatataga aattaaataa gatgtagaaa ttcattatgt ttcttatata 7140 ttattgtatt tggatgccat ataaaattat aaataagaat tcattggaaa acaaatataa 7200 atcttgttta actaactatc aaatgaaaac tagatgaagc aaaatataat tttaaagtat 7260 tgtgttttcc tttatttgtg ttttataatt tttaatctat ttagtctttt catgtttttt 7320 tttttttaaa aaaaaaaggc aaaaaaaatt gctcttaaga agctccctat attgttaatg 7380 aaaaaacaat tatctgataa tgttgttaat ttctaaaaat aatatttagt ttttaaaaat 7440 gaaactatat tttgaatggt atggtagaac tattacaaaa tattgttatg attgactaag 7500 ttttcttacc tcataaaaca aaaggttctc cctccaatta caaaatgtct gttttgagat 7560 tactttattt tatttttttc ttattttctc tccttctaag ctttcttttt gttttatgat 7620 tctctaagca taatatgtgt ttgtctttat atatattata ataattataa gagatggatg 7680 aatgcacctc cctatttcaa ttttaatttt ggattattgg tcaagttgta ataccattat 7740 atatatatat atatatatat atatatatta tttcaattct tcaaagtaca gtgatctttc 7800 tcattagcca tttaaaaaat atatatatta atacaataag ctttaaaatt tcatttccat 7860 cttgaatttc tcgaataaaa gattctatta agaaaattag agaagagaat ggattaagaa 7920 aattagggga gagaaaatgg acgaatgtga aatttgaaaa aaaaaggtta tattaaaact 7980 tcataagtcc ttttctgata tgttatgtaa tctagattat aatatatgtt atattaaaaa 8040 atattattat tttttaaata tcccattatt ccaactggtg gtcttggtag tgagatacta 8100 aatgagtata cgtttactta attccagaat tgcaagaagc atgacaaaga ggccattgaa 8160 aaatatattg gacatgttat cctagcatcc tgcaagtgta aaggcaatgt tggaaaagtt 8220 tagagtagag ccttggaggt agtggagtca cgtcatcagc atcctaacta ttaagtgctt 8280 aaatgctgca tgctagatgg gaagtggagg actacttata ggctatagga tagtggagaa 8340 aatgtcatct ctccaatcat catccctaaa ttgttagcta cttatagctt gtcaaaatat 8400 tgaacattac cacccaatcg gtggagaaaa aaataaataa aaagcaggaa aaaaaatcca 8460 taaaaagttg ttgctatata tttaaacgtt tttgatatat ataattagaa tcaaggataa 8520 aaatatcaat aattacaaat atattggtac ttcgatttta gggatatatc gaaaatatca 8580 taaaaatatc aatgaatatt ttttcccaaa tatgggtgga gcgaaaatta tttaacattc 8640 ataggaatgc tcggaaaaac tgtaaaaacg ataaaataag caagaataca cattttgaaa 8700 ttattttgta agtataattg acatagatgt gataaaaaga aaaaaacata gataaacaaa 8760 catatatcgg tagattcaat atttcaattt taagaataat aaatatgcat tttggaaatg 8820 tataaagtta gaatagagtt aaaaaaatat ttgtttttat tgaataaaaa taatttatac 8880 atatgacatt gcaataggac ttagtatcaa aatgaagatc gatatggttc tatcatattg 8940 ttagatgaag ggagtctatt ttgttgaaga caatatttat tttcaaaatt ttaaaatact 9000 tttatcataa catgttttat tacattttaa atgaaaaatg aaattaattt atatcaaata 9060 ttttatttga gatttattaa aattattaat aaattatctt atgaaattaa ttttaatttc 9120 taaaatatgg cctttagaaa gcaaaattgt tgatttcatc aagcgaaatt tctcataatt 9180 tgtttcattg tttttttttt ttttttttac taaatctaaa aataaaaaag ccacccactt 9240 cctttgactc ggccatgaag aagccatttt tgaagttgcc ttccacaaga gagaatccct 9300 aaaaaggcca ttgtttcctc tgccactctc attgaagttg ccttccacaa gagagaatcc 9360 ccaaaaaggc ctttgtttcc gctgccactc tcattcaacg caggtactga tctaataagt 9420 ttattattac tattattatt attgcaatcc ccatttgatt cccatgaaaa tccatcaccc 9480 attccatttc caagaagatt cttcctctgt tgatttcgaa gacaatccat gcaaaacccc 9540 catggaaaac cataaaataa aataaaaatg cttttttctt tgctctgtgt ggtttctgga 9600 tgtgttgtaa gggtctctta gcttttgtgc cattggattt aaatattatg aaccctaact 9660 ccacgatttt tgaggcaggt tgaaaaactc aacctttacc tgcaaatcat ggtcatatta 9720 ttgaatagca tgttatgtct ttttttaaaa aaaaaaaaaa acggacagat tttgtatcct 9780 gtgcgtggct tggactagta ggaaatatcg gtaaattttc cgaaaaatcg gtaaaaatac 9840 cgattaatac caaaatatca gataaatttt ggaaaattta ccaaaatttc tgtggaccaa 9900 taattggtta cgaattttgt gttggagtcg gctgatcaat gatatttctc tctgaaatag 9960 tattttattt ataattatta tgaaagcaat gataaacaat ttattaaaaa acatgacaaa 10020 ttttatggta aaattattta ttaatcaaaa attgtttata tgaaaaagat aaacattaaa 10080 tatgaaaatt ctaaaattat tgaaagaaaa atattataaa ataaatatca taaataattt 10140 aagatggata ttttataatt ctaatttatt tattacaaaa atcattataa aatattttat 10200 tgctatgtaa taatggtaca caattaccaa cccattgtag aaataagcaa agctttctca 10260 aactgcatgg atacgtaatg atgatcctat ctttttatcc aaaaagtaga acaagaaaca 10320 tgaaacctgg atgagaaaag aggaaacaaa caaggggaaa aagaactaag agttttaatg 10380 gatattgatg ttctatttgt tgtttaaaag ttcatatcct tgtaccaaaa atgcaggtcc 10440 tcctaatcat gggttagttt tttaatttct caatcattag aggacaattt caagggacaa 10500 gtcttgttaa ggtaattctt tactctctca tgtttctctc tctctatact ttcccatgaa 10560 actctaactt gtcaatactt catttttttt taaaggaaat tgaacatata taatcaaact 10620 tgtagttgag ttatttgatg gttagtagat ttggtctagt gggtgggttt acttttgatt 10680 taatttgatt ccattgaatg tgacgttgat gactttatat tttgagtatt aacttttgtt 10740 tgtttgtggc caagtgtaat taaatttctc tactcatgat ttttcaagta aatatatttc 10800 ttttttccgc tactaggcaa ataacaaata tgttaaagga attaaatgta tttcatttta 10860 atgtgttaag gatacttaga tagaatttaa ataagttcat gcatgaaaca ttagacttcc 10920 cattctagca tccttgtatg acaaaaattt ctcttattac atgctaagga catttaagtt 10980 gtcaaagaat gcaaatggtt cattgatgaa ctagtttgaa gttgacaact tctaacttag 11040 tctagcatgt gaatgagact ttttttctac aaatgatgct tgaattgtcc aattggacaa 11100 tataaggaaa acataatatc tttgaagtta cgctcttatg cttcattcat tttttagaaa 11160 tttcgacatt cgttcctttt gttctctggg tgcatatttg gacaaggctg aataatatgc 11220 cttctccatt ttgtgtactt ggagaactat agggtaatgc tattgaaatt tttctaaaat 11280 gaaacgaaat agaatagtag ttgacatgta gggattatgt tttcctatat ggaataggaa 11340 ccaccaccta aactagaaag ttggagatgt tagaatgcat atgacatgta gtttaacttg 11400 attttagttt aacaagatag aatcatgaga gttaattatg tttcttggtt taatattttg 11460 atatataaat ttattttaat tttacagata tatgcataat aaatgatctt tgacgattcg 11520 ctattgaata aagacttgaa aaagtgtaac atatatttat ttctcatttg tatggtagtg 11580 cataaactag ataggatcat aattctataa gagaaccgca ttttttactt tggttcaata 11640 cctaatgaaa ttaaatgtat ttaataagat gaaatatcat gaactaatag gaattttaaa 11700 tggataattt atggcattac ctacaatgac atgaattgaa tatgacaatt tttataatta 11760 actatctcac tttgatatac ttgtagacaa catggctata ttacatgatg aatccttttg 11820 atatatgaca caacattaat gttaaaattc ctcatgatta attcattgtg tatttcaatc 11880 atagaatgga tcgaagttgg atgtctaaag atagaatgtc acgggagtat gaggaaggag 11940 ttgaatactt cattaatttt gcattagaac attgtccgaa tcaaagtgga attcgttgtc 12000 cttgtatgcg atgtggaaac ttaatacatc atacacctaa caagattcgg gaacatatgt 12060 ttttcaatgg tattgaccag agttatcata catggtattg gcatggagaa gcaggtccta 12120 ctagtagaca accaactgaa atggcacaat gttatgacac gatggattgt ggtgacgttg 12180 ctagtacagt agaaatggtt catgttatag atgatgagtt catgacagac ccaatgtcat 12240 ttaaaaaatt gcttgaagat gctgaaaaac ctttgtatcc tagttgtata aagttcacaa 12300 agctttctgc attagttaaa ttgtacaatg tgaaggcacg gtatgggtgg tcagataaaa 12360 gcttttcaga tttactccaa atattagggg atatgctacc ggtcaacaat gagatgccct 12420 tatccatgta tgaggcaaag aaaacattga atgcattagg gatggaatac aaaaagatac 12480 atgcatgccc aaatgattgc atactataca ggaatgagtt aaatgatgca tcttcatgtc 12540 ctacttgtgg aatgtcaagg tggaaggtaa acaaggctgg ggcaagaaac actaagagga 12600 ttcctgcaaa agtgttgtgg tatttcccac ccatccctag gtttaagagg atgtttcaat 12660 ctcccaaaat agcgaaagac ctaaaatggc atgcacaagg tagagaaaat aatggtaaac 12720 ttcgacaccc agtggattcc ccaacatggc aactagtgaa ccaaatgtgg cctgaatttg 12780 cttcagattg taggaacctt agacttgcta tttcagcaga tggtatcaat cctcatagct 12840 ccatgaccag taggcatagt tgttggcctg ttctcacaat aacttacaac cttccccctt 12900 ggttatgcat gaagaggaaa tttatgatgt tatctttgct aatatcagga ccacgacaac 12960 ctggtaagga tatcgatgtt tatttggcac cattagtcga tgatttgaaa gcattgtggg 13020 aggtaggggt gaaagcctat gatgcacatc aacgagagtt cttcacatta aaggctattt 13080 tgttatggac gattaatgat ttccctgcat atgggaactt gtctggttgc actgttaagg 13140 gatatcatgc ttgtccaata tgtggtgaag aaacaaattc acattggcta aaacatggga 13200 ataagaactc atataccggc catagaaggt ttcttccatg caaccatcca tttagaaagc 13260 aaaagaaggc atttaatggt gaacaagagt ttaggttacc tccaaaagaa cttactggag 13320 atgaaatatt tacaaaggtt gatatgattc ataactcatg gggaaagaaa aagaaggtta 13380 aacaatgtga atcctttgct aatcctacaa gttgctggaa aaagaagtct atattttttg 13440 aacttgaata ctggaaatat ttttatatcc gacacaactt ggatgtcatg catatagaga 13500 agaatgtttg cgagagcatc attggaactg tgcttaacat tccaggtaaa acaaaggatg 13560 gagtaaagtc tcgacttgat cttctcgaaa tgggcttaag gcctggctta gcaccaacgt 13620 ttgggttgaa gcgaacttat cttccccctg catgctatac tctaagtaga aaggagaaaa 13680 aaatagtatt gcagacttta gctgatttga aggttcctga aggttattgt tcaaacttta 13740 gaaaccttgt gtccatggaa gagctaaagc ttaatggtct taagtcccat gattatcatg 13800 cacttatgca acaactacta ccagtagcaa taagatctgt gttgcctaag catgtcagat 13860 atgccattac aagattgtgt tttttcttta atgcactttg tgcaaaggtg gtggacgtgt 13920 caagattgaa tgatctacaa caggacatag tggtgacttt gtgcttgcta gagaagtatt 13980 ttccaccttc catctttgac atcatgcttc atttaacagt gcatttggta agagaggtta 14040 gattatgtgg accagtgtat atgagatgga tgtacccatt tgaaaggtac atgaaagtcc 14100 tcaagggtta tgttcgaaat cataatcgtc cagaagggtg cattgctgag tgctatatcg 14160 ctgaggaagc cttagagttt tgtacagagt atttatcggg catggatgca attgggattc 14220 cttctagtat gaaagatgaa tggaaatgtg ggaaaccatt acttggtggt cgtgcaataa 14280 ctattcatga ttataaattg gtggagcaag cacatcatta tgttctacaa aatacaacca 14340 ttgtacaacc ttttattgag taagtgtcat atatgtgaat atatgagttt gaaactctag 14400 ctaatgttta tacaaaccat gacttgccta tttttccttg atagtgaaca tatgaaatat 14460 ttgaagacaa aatatcctcg tcaatcaaag agagtgaagt ggctagagga tgaacatgtg 14520 cgcacattta gttattggct tagaaaaaat gtatgaaact caatattcat actcccctta 14580 aaatttaatg cttacaaaat tttaaattac attaacttac atatcattaa tgaaccttat 14640 aggtttcaga tgacataagt aagaaagaac ctattgaaaa ggaacttaag tggcttgcgc 14700 aaggaccaag acaacaagtt cttacttacc ctggatatat cattaatggt tgtcgttacc 14760 atatcaagga ccgtgatgag gcacgagtca accaaaatag tggtgtcagt attgtggcat 14820 cgaccatgca aattgcaagt tccaaagata agaatcctgt gcttggtgac atgtgttttt 14880 atgggattgt cacagagata tgggaccttg attataacat gtttaacatt tgtgttttta 14940 agtgtgattg ggttgatagc aagaatggtg tcaaagttga tgagcttggt tttacattag 15000 ttgatttgag caagatagga cataaatcag atcctttcat tttggcaacg caagcccaac 15060 aagtatttta tgtagaagat caagttgatc caagatggtc tattgtatta tcaaggccaa 15120 aaatggagtt gtttgacata gaaggtgatg acaacatagc cgacaattgt atggagcatc 15180 acccatttgc gaatgggatg cctaatatta agtcttttga tgaagttgaa gattatgatg 15240 aaatttgtat gcgtactgat tgtgagggga tttggattga acattaagct taatattttt 15300 ttttgttttt tagggttgtg ctttgtgact actaagtgta ttatgtgttt tttgagttat 15360 tgttaatata caatgtgata ctcaacaatg ttatgttttt attttattct tctcaaatat 15420 atttttacta ttatatactt gataagctat tctaaataaa tgcagttagt atcatattta 15480 tatatattga gatttaagat taattttcat gtattgcaaa gtttgtacaa caatgattta 15540 ttcctactta tgaaatcatt ttgtaactaa tttctttaga tttagttgag atacattttc 15600 aagtgttgtt tattagtgca taattcttaa ttatttggga acttaggtga aaagtgcaac 15660 atctttacgg atgtctcaac caagaagaga taaagagcaa gtaaccatta aaatatcatg 15720 atttactttt gaatgtaaga tatatatata tatatatata tatgtattat gagattgatc 15780 atattctttt gattgtcatg tagatggatg aaaaaggaag gggaacagaa gattacttca 15840 ccaaaaaggt tcagaggccc aactgtaaaa cctgaaattg ctaaaaagag aagtgaagga 15900 gtgaaaattg acattcaata taatgataat ggtgagggag tgggtgaggg atatgtacag 15960 cttgtatcat acttggggat gctagcacga accatggtgc cagtatatca tactaattgg 16020 agagtagtgc ctatggaatt gaaggagaaa ttatgggatt gcattaaggt atataataat 16080 caattgaaat tattttccta tattttgtgt agaccttaca cgattattaa ataattaaga 16140 tcttcttata aggtatatag taatctactt aaattatttt cctatatttt gtgtacacct 16200 tacatgctta ttaaataatc aagatcttat attttagggt gcattcttgg ttgatgagaa 16260 tagcaaatac aacgtcatat catcaattgg gactagcttt aggtcattca ggcacacatt 16320 gacgaaaaag tatatcctgc cttacaagga taagcccgag taccttttgc aaccaccaat 16380 tgaagactgg agaaagttag tggctaatag gttgtcaaca gagtttcaag ttaaatcaaa 16440 aaaaggaaaa gaaaggaggg aaaaatactt ttatattcac caagtgagta gaaaaggata 16500 tgcaggactt taagaagaat tggtgagttg aatttgtgta ttttattttg ttggacattt 16560 acttttgtaa agtttaatta cttcactttt ttgttttttt atagatgcaa aagacaggtt 16620 caaggaaacc tattgataga tgggtcttgt ggaagctagc aagactgaaa aaaggtgaat 16680 atgatgatgt tacaaggcct atagaggaaa agattgtaag ttgtcaaacc tatacttagt 16740 tttagtcaat ttcatttgtt tttgtttttt ttttttaata tgactcttga agcatcttat 16800 atttttctga ggatgagtta gcaaaggctg ttgaggaaga gaagatcaca tgtgttggcc 16860 aaaatgatat cctcacttta gcattgggta catccgagca tcttggacgg gttagaggaa 16920 aaggtgggaa aaaaaaaagc caaaaaaatt cttcaccaca ccaaaaccca caaaaactct 16980 tgaagaagag gaatgtcaaa ggatgttaag ggagaaagta aagagcttgg aagaggagat 17040 catttctttg aaagctaaaa aaaaaaaaaa gaacccctca caccccactc taaagtgagc 17100 agcacaaaca taaggaaaca attgttggaa catgaagaaa tacgagggaa aactcattat 17160 agtgctcatg tggagaacct atcagtagaa ggaactcgaa aagcttctcc actaactcag 17220 gtatatatgg cttttcctaa gttaaattta taaaaacaat atataaaata actataatga 17280 aagactaagg attataaaat atgtttttac aggtttataa atgcaaatta gctcttgaaa 17340 ctgaagagaa cattgttgca tatggaactt atttgcgaga ttcaaagatt tccattgatg 17400 gaactgatat attagtggtc atcctttacc ctcttcaacc taatgcactt cttccattcc 17460 cgctgtctga aaacattagt acaataaggg agggtgttgg atatgaggtt ttgtggcctg 17520 ttgcatttgt gataaatgat gaaaatgatg aggtgaataa tcttataccc aaactttcaa 17580 agttgagtta tattttccta cactcttggt ttatttattt ttcattttaa tgtcatgcat 17640 ctatttatgt gtttaggatt ttggcaaaag gaagaataaa atgaagaaga tacaagcatc 17700 cccaaagaaa atcaaatatg agaatcctag agatatacaa ctgttttcta atacagtttc 17760 agcaatgttg gagggtaaac cggcacccaa agttgacttt ccaatcaatg tttttgggat 17820 gaaatttcaa accttcctct tgacaactga aatgaaggat gtaatttctg caaaagagtt 17880 gactatgaat tgtatatgtt tctatatttg gtgagatttg ttgtaaatct ttatgttaca 17940 ttcatgatat aaataagtag aagctgtttt tttttttttt tttaagtaat tctaaattag 18000 gtgatatttc attaggtggc tgcatgaaca tctagatgat acactacatg agaaaattat 18060 atttgttcat ctcggaatgg tgtctaaggc tggaacaata gccccacaaa ttgaaaaaag 18120 agcaaggttc attgctgatc gcctaattga ctccaaattg gcatatctga tttttcttcc 18180 gtataaccca aggtaatttg ttaattataa ttgtttttaa tttcttagcc ttataaatgc 18240 tatttttcta aattatatgt taatatattg taggtttcat tgggttttgg ctgtaattga 18300 cctcaaatca caaacagtat actatttaga ctcactatta caacagccat accaagatat 18360 aaaagatatt gtgaacatgt aagtctacca taattttagt tttcatgtct caaaataaac 18420 actaatgtaa tcttattttt tgtaggaggt ttcgaatttt tgtatctcaa aagaaaaaag 18480 gatctaaaaa agagctcaag tggatagtta ttgaggttac atttttttct tcttctaaac 18540 tttttgaaga cttacccaca tttaagttgc tttcttgaat taaaagttta cttgattttt 18600 gaaatgtaaa gattctatat ggcttcctct cacatgaata tatacctata tatatgaatt 18660 ttcttagctt ataattgttt ttgttattat ttcctattca taagttgagt ggagaaggat 18720 accatatacg tttgtttcac caccttatga aaatataatc taaattgcta tgaatacaat 18780 gtacccattt gtctattatt ccactagtaa tgaagtagta ctaaaaaaga acaaacctat 18840 agtatttaca atcctttaca acaatttaga tatatgtgtg ggtaaggaag caatgaggat 18900 tcatttagat agctttgatc atgttactta ggtgtgagtt gttctttata tctttctttt 18960 ggccttagta tgtcttatat acatcctatt atttagttta gatatttatt gtaaggcaca 19020 acctctctct ctctctttct ctctttaatt taaacttttt actcttttat ccatcttcaa 19080 tcaaatggtt caaatgtaaa acatttattc cttataatta ctaattgtat ttctcttcta 19140 taatgtcaat ctatgagatg taaaaggatg ctaatactac atatttccaa atatattatc 19200 gataattgct cttgaagctt gattgattta ccttaatgaa gtcttaaaag tcatgatctt 19260 ttctaaggga tattttcaca cggacaaaag ttaactattt tttttaaaag ttaatcacta 19320 ttcttaataa atataattaa tcattacctt tatctattcc tttttttgtc catatttcac 19380 atatacatgt tatttgacat tcttatattt tacccaattt aaccctccaa gttgtaaaca 19440 ggggagctta gggtattatg ctagacatga attgacttaa tttatgtgca aattttactt 19500 gaaactaaca ttatgtcatc cattgttttt ttaaatttta aatgtgaagg atgaaaaaat 19560 tgaccaaatt tatatgttgt catatttgat cgtgaaattt gattgatata attttgctta 19620 tagggaccca aacagttgga tggtgtcatg tgcggatatt ttgtcatgcg atacatgcga 19680 gacataattg caaatagaag tctcctaaca tctcaggttt atttacctat gtattttcat 19740 aagtacatga gaacttatac atatatttaa tgtttcatgt taacatattt tctcttctca 19800 tatattttag ttcgaaggga aaaaaaccta ttcgcgagtt gagttagatg aagtgagatc 19860 tgaatgggtc tcatttttta gcactcttat cttagaccaa gtatagtggg tatgtgaatt 19920 ttatagtttt ttaataaaat ctcaaacata aattttaatt aatgttgcat cttttctctt 19980 tgcaaggtat atggtgacac ttgcagttgt tgcaattttg agatttcaag atcatacgta 20040 agatcttatt gtcatgcata gatgctgaag ttttggatac ttttgggtac atacctatat 20100 cttttaaaag atacatttga tgaaattacc aattcatgtt tttgtttttt attattctct 20160 atgtttgttg gattctttta gcataaattt tcgtacatgt taatatcatt ttagtaaaat 20220 tttaaatata gacttaaagt aatgtagttt gtttatctac ttgcaagaag ttgaataaca 20280 tttgtagtag ttggaatttt gagaatacaa catcagcata ggttcttact atcatgtatg 20340 taaagttgca attagttttt tcttttattg gatattctta ggtacatatc ttatctatat 20400 ttttttcctt aaaagttcat tgctagattt tattttattt ttttttatgt attttggtac 20460 atgtttatat ctttttaatt agtactttta aatataaaca taaactaatg ttgttttttt 20520 cttatttgca agaggttggg tgatatttgc aacatttaca atttttaaag tacaagatca 20580 tgcataagtt tttgtcatca tgtatagcta ttagattttt tggtaaatat ttgtcatttt 20640 atatatatat atatatatat atatatatat atatttgata agagtacaag atcgtgtata 20700 gttgcttggt tgtttgtgaa tacatttgga tatatttggg tacatgctta tatttttttt 20760 ttaaaaagtt tgaaacataa acataaagta atgttgtttt tttgtccata tttgcctttt 20820 ttggatgtat atgtgatgat aatacaagat tatgcaagga tattaagctt tttttttttg 20880 tcaatatatt tgcctacatg ttcatattta aaaaaaaaaa ttatacattc atgtacttta 20940 tccatatata tacacacata acaggttcaa tttttatgta gatcatttgg gcaacaggtt 21000 aggttgttga catgttccat atgcaacctt gatatgaaat aaaacaattt cttttatatg 21060 aataaagaaa tcttgacata aaagacattg tattccttga cataagaata aaggaacctt 21120 aacatattaa aatttcaact ttcaaaaaaa aaacaaatcc ttgtcatatg tgtaaattaa 21180 atttaaaagc atatacaaca acattgacat atatcatact taagcttaac atatattgaa 21240 tataatcttg acaaaacaat gagttaacct tcacatatgt ttaacctaac cttgattgat 21300 gtggaagaaa cattaacata tgtcatatta ataagattcc tacgttgata gaaataaggt 21360 ataccttatt tcatgcatat gtcaagctaa cttttatcat ttcttgacat tagcatagat 21420 aacatttgtg aatactgatc taccttaaca gatatacctt atcttgacaa tgaaaaactg 21480 tcaatgaaga ccttttttct tgtagtg 21507 // ID HERA repbase; DNA; DCOT; 4737 BP. XX AC . XX DT 18-DEC-2006 (Rel. 11.12, Created) DT 18-DEC-2006 (Rel. 11.12, Last updated, Version 1) XX DE A putative non-autonomous helitron, from Medicago truncatula. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW transposon; DNA; repeat; Interspersed; HERA. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-4737 RA Shankar R., Jurka J.; RT "HERA: A putative non-autonomous helitron from barrel medic."; RL Direct Submission to Repbase Update (18-DEC-2006). XX DR [1] (Consensus) XX CC The region encodes for helicase and recombinase. XX FH Key Location/Qualifiers FT CDS 3819..4184 FT /product="HERA_1p" FT /translation="MVEEGGTYQLEGRVISGSNIGEKVFIPRLSLTPSDNR FT IPFKFKRRQFPISVSFAMTINKSQGQSLEHVGVYLPSPIFSHGQLYVAISQ FT VTSRGGLKILINDDDDDDIDVASNVVYREVFRNV" XX SQ Sequence 4737 BP; 1422 A; 930 C; 641 G; 1739 T; 5 other; tattggtaaa tctattgtca ttttcttttt agcatcacaa tatcttctta tatattaaag 60 ttaacacaga agcatatttt agccctaatt ttaacctaaa tttattgcat aaatttacta 120 ttttaaccct gatgctaaat tcctttgttt aaccttattg aatttccccc ttctcaattt 180 ctcgatacat cttatcttat atattaaagt taacacagaa gcatatttta gccctaattt 240 taacctaaat ctattgcata aatttactat tttaactctg atgctaaatt cctttgttta 300 accttattga attttccccc ttctcaattt ctcgatacat cttcttatat attaaagtta 360 acacagaagc atattttagc cctaatttta acctaaacta attgcataaa tttactattt 420 taaccctgat actaaatctt cttatatatt aaagttaaca caaaagcata ttttagcyct 480 aattttaacc taaacctatt kcataaattt tctatttaac cctgatgcta aattcctttg 540 tttaacctta ttgaattttc ccccttctca atttctcgat acttattcct aaacaaagct 600 ttgttgccct aattttaacc taatatttta acytaatatt ttagcaactt ttccctcctt 660 caaaacctaa ccatatttcc taattcccct cctccaaacc ctaaccatga tttcctaact 720 tcactcctcc taaaacctat ctaattgatt tycataaacc atatctccta actcccctcc 780 tccaaaccct caccaatata ttttaatcct ttctcctaaa ccgaaatctc tttctaaaac 840 catacctttc tcttaaaccg aaatttctta atcaacatgg cttccagaaa cattcagact 900 ttgctgtcat accactgcct cactgataac catatcttca ttccactctg gtttatacta 960 aatatataga cttttgctct tattcctcgc tgttgtaaag tataaatcat tctttcaatc 1020 ccttttaatc ttttgtaggt ccgttggtga aaaaccctct ttccgatctt gacaaagcaa 1080 tcaacaagct gagactgaaa tacagatcat atatcgttga atatgacatt gatgttgtat 1140 gtgttttttg cgaaatatac ctattcgggt gcagtatgct tgccaaacat gtttggcggt 1200 gattttggag atcaaattgg gcgctatgca atattgactg atcctaagtc caacaagttt 1260 gaagtattgg tcgacagagt aaacggagca tttttttctc acaaagggat ggaaagcgat 1320 tcgtgacttt tacggaatcg atcttggtgc ctggattacc ttggtttttg ttggtgacgg 1380 acagtttgat atacagttga ctgataggtt tcacaagagt atcccctacc cggtttttga 1440 tccccctatg catttccttc ttgacaagat gaatttgcaa gcaactttcg atgactatct 1500 ccccccaata acatctcttc tcgcttatcg tcacaatatc actgacatgg ttcttgattt 1560 cgttaactga gtatgatgtt actaaaggtt gcatggtatg atacactttt cgtgtccacc 1620 ttaacttctt ttattccttt tccgtttagt tgatataagt tacatggatt tctaattttg 1680 cagattctac tttacaccgg caatgttccg cagatgcttg atacactcaa gacaactgtg 1740 aatattatcg acgattgcgg taacttatgg gtgtgtgagc taacttttgc aacttttcct 1800 tatgaacact tcaagatagg acggcgttgg aataggtttg tggaagctcg caggctccgt 1860 gaaggtgtga agatcagagg gggtgctccg atggttgggt cacatgatac catctacctt 1920 gatgttattt acaattagtc catgtttaga taaattgtgc aacacctttc cactttgaat 1980 tttaagtttt agtttcttaa gagttttgga agcatctatt tttttgtctt tgaatttagc 2040 aaatgtccct tgaatttcat aaataattta gccttgcttg ctttggtttt tgatttatat 2100 atttgtgttt gtgctcctca aactatttag taacgtgaat tttgtaacaa gggaaactta 2160 tatgtgtgtg tatgtttttg tgttgctgaa tcaatttagt agcattgctg tgttattgaa 2220 gcattttagt agcatagctt ttagtaacat tattagtaac aattactacc ttttggtgac 2280 acttttagta acattattac taacaattac taatcctaat ctctaaaata tgttttgggt 2340 ggaatcaaac taaaatccta atcctaattt ctctcattca agtaactaag aaatttcatc 2400 cacatctcta aagtaacttt ttggtggaaa caaactaaaa tccttatttc tctcattcaa 2460 ataattacgg gatttcattc acatctctaa aatatgtttt gggtggaaac aaactaaaaa 2520 tcctaattcc tctcattcaa gtaactacta aagatttcat ccacatctct aaaatatttt 2580 ttaggtggaa acaaactaaa atcctaatcc taatttctct cattcaagta accaagagat 2640 ttcatccaca tctctaaagt aactttttgg tggaaacaaa ctaaaatcct tatttctctc 2700 attcaaataa gtaagagatt tcatccacat ctctaaaata tgttttgggt ggaaacaaac 2760 taaattccta atcctaattt ctctcattca agtaactaag agatttcatc cacatctcta 2820 aagtaacttt ttggtggaaa caaactaaaa tccttatttc tctcattcaa ataattaggg 2880 gatttcatcc acatctctaa aatatgtttt gggtggaaay aaactaaaaa tcctaattcc 2940 tctcattcaa gtaactacta aagatttcat ccacatctct aaaatatgtt ttgggtggaa 3000 acaaattaaa atcctaatcc taatttctct cattcaagta agtaagagat ttaatccaca 3060 tctctaaaat atgttttggc gagtcaacta tggtaattct taagtcaaac acactgcccc 3120 atcaaaaata ttaatttcat attattcata ttaatcttta tccaaaaatg ttgggcattt 3180 cctaatttta ttccacttca actacatccc tttgttctgc gccccttccc tatttacatg 3240 ccaattctta agtaaaacaa agtgccccat caacaatatt aatttcattt tattcatatt 3300 aatctttatc ctaaaatgtt ggccacttcc taattttgtt ccactatttt gtgcttatcc 3360 tgataactaa tactctttat tgctcaaccg acatatccta ctcacacgta ttgcaccttt 3420 ttcctataaa tatatcataa cctattagcc aaaccatctc aatctaaata agcatcctct 3480 ttcttggaaa ggaaaaaaca agccaatgat gtctgccaaa tacactccaa tctcagctgt 3540 ttctggagga agaaggaatc tcaagatgtg tgtgcgagtt gctcacattt ggttgattcg 3600 agagaagaag gtccccacta gcatcatttt catgaacatg ttactggtcg atgaaaaggt 3660 ttctatatgt ttgcactctt agctttaaaa ttaaactaat gtcatcgttg ttttttagtt 3720 atgtaattta accagctgtt taatgttgtt gttttcgtca atagggtgga cgtattcacg 3780 ccacagctag aaaagatttg gtggcaaagt tcaggtccat ggttgaagaa gggggtacat 3840 atcagctcga aggacgggta atatctggtt ctaatatcgg tgagaaggtg tttattccaa 3900 ggttatcgct aacaccatct gataatagaa ttcctttcaa atttaaacga aggcagtttc 3960 cgatatctgt ctcatttgca atgactatta acaagagtca gggtcagtcg ctagaacatg 4020 ttggtgtcta cctaccgtct cctatttttt cacatggaca attgtacgtc gcaatatcac 4080 aggttacttc gaggggtggt ttaaaaatat tgattaatga cgacgacgac gatgatatcg 4140 atgttgcatc aaatgtggtc tacagagaag ttttccgtaa tgtgtaggac ttttttgtgt 4200 actgttcatt ttcttactta ttgaaactat ttgcatgtca acgaacttca atttcccttt 4260 caaaattata tgttatttta aagtaacagg aactacgtac tagaattatg gaacaataac 4320 aaagtctttg gtattgacat tttgctttga ttcacgacaa tttttagatt cacgcgaact 4380 acagtgtctt atttttcagt gaatattatc ttttttaaat gacacgtgcg ttagcacggg 4440 tcaatggtct agttaaagtt aacacaaaag catattttaa ccctaatttt aacctaaatc 4500 tattgcataa attactattt taatcctgat gctaaattcc tttgtttaac cttattgaat 4560 tttccccctt ctcaatttct cgatacatct tcttatcttc ttatatatta aagttaacac 4620 ataagcatat tttagtccta attttaacct aaacctattg cataaattta ctattttaac 4680 cctgatgcta aattcctaac cttatatttt cctcaatttc tcgaatcttc atatata 4737 // ID Ogre-MT3_I repbase; DNA; DCOT; 11878 BP. XX AC AC151524; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 13-APR-2007 (Rel. 12.03, Last updated, Version 2) XX DE Autonomous LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-MT3; Ogre-MT3_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-11878 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC151524; Positions 78558 90435. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC In Medicago truncatula, there are distinct subfamilies of CC Ogres differing in their LTR sequences. CC Additional annotations: 6026..6311: putative intron. XX FH Key Location/Qualifiers FT CDS 733..2157 FT /product="Ogre-MT3_ORF1" FT /translation="MDSKTRSIKKYTFKKPDLTRLRELASHVTNPRDFRER FT HGRLLDLLKVKVEDGILETLVQFYDPICHCFTFPDYQLVPTLEEYSFWVGL FT PVSEGEPFNGLEPSPKNATIAEALHLKPSDLVHPHFTIKNNLQGLTAKFLY FT QKASDFVKAKKTNAFESIFTLLIYGLFLFPNMDNFVDLNAIKIFLAKNPVP FT TLLANTYHSIHHRNIREGGLIVCCAPLLYRWYASHLTKSVFSKENSGKASW FT SERIMPLTPADIVWVHAGTNTAGIIGSCGEFENVPLIGTCGGITYNPTLAM FT RQYGYPMKGRPDSLSLSNEFYLNKNDHTNLRMRFVQAWHSIRKFDGIQLGR FT KQSFAHESYTQWVIDRATAFGMPYTLPRFLSSTVPEIPLPLLPQTKEEYQE FT RLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNERI FT KEKDAALDRIPGRKKKRMDLFDGPHSDFED" FT CDS join(2595..6026,6313..9774) FT /product="Ogre-MT3_ORF2" FT /note="gag-pol." FT /translation="MAAAEQTNNDLREEVSSLKEGMEKITAMMMDMMAAQA FT QASQAKIVQTVQGDVEVSQPAGSTATISTTQPLVNQFSSGDMTNMYSSGFR FT PTGSLGSSIPPQYHMPPGYPWGMPLANNEGVRHNAPEMQFPFGHQQTPFYQ FT SGQPFPQATMTYAGPLVHAGHQEVEQVYHSNSVAGDDRVGNLEERFEAVHK FT ELKTIRGKEMFSQNVNDLCLVPDVVIPHKFKMPIFEKYTGDTCPEMHLVTY FT VRKMVAHKNNEPLLIHCFQDSLTGPAHTWYMNLKGITTFEELANAFIQQYK FT YNSYLAPNRKELQSMTQGDKESFKEYAQRFIQKSAQIRPPLDEREVSDLFY FT ETLSPFYSEKMLGCASQKFTDMVDMGVRIEDWVRKGRVSKDGASSGGSSNG FT NRKFGNGSSKKNAQEVGMVAHGGSQPIYPSYPYVANIPPPTLTPQNPNYQL FT QRPQAPHPYYPPLYQPQPYQPQPFYQQPYYPPPPQQQQPRPRAQQQHTRPQ FT RNQFPPIPMTYEALLPSLLARGLVQTLPPPRVQNPLPPWFRADRNCAFHQG FT APGHDIEHCYPLKEAVQKLIHNKDLSFTDPNPAAPDHPLPPHGPTVNMVED FT YQEGGLVTRSQDIKTPLVPLHVKMCEAAMFSHNHNSCEVCSVDPRGCAQVQ FT DDVQGLMDREELVVTREEKSVCVVIPVFKDSAKPIDGVTPVFKDSSKPAVA FT PLVICVPRPKPFFSQNAMPYNYEPTSIENGKEISWSPSTSVSNIAENSQIL FT RSGRILPAVVQAKKKAPVIESVPIPDPSKGKSMVQPGETDNDEILKLIKKS FT DYKIVDQLLQTPSKISIMSLLTSSDAHRDALMKVLNQAYVDHDVTLGQFGS FT IVGNVTACNNLSFSDEDLPVEGKNHNMALHISVMCKTDSLSNVLIDTGSSL FT NVMAKTTFDKLTYSDGFIRPSCVSVRAFDGSRKTVWGEVDLPITVGPQEFK FT VTFQIMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVSRGKLVTVSGESA FT FLVSHLSSFSFIGGESPDGTSFQGLSVESGTTRGETCMASLKDAQRVIQEG FT KAEGWGKLVQLPENKRKEGLGFSSNNQVMFDPTRGTFHSAGFINAPPETNA FT ILEDQSEEVAPDFVTPGGNCCNWIAVDIPSAIPLSKLNIHEPVEHSDPMLP FT SNFEFPVYEAWVEEDEEIPDELRWMLEQERKAFQPHKEEIELINLGTEDDK FT KEIKIGASLEASVKKKIIELLREYDDIFAWSYKDMPGLDHDVVEHRLPLKP FT ECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLITSEYPQWLANIVPVPKK FT DGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTARCKVFSFMDGFSGYNQ FT IKMAPEDREKTSFITPWGAFCYLVMPFGLINAGATYQRGMTKIFHDMIHKE FT IEVYVDDMIVKSGTEEEHVEYLSKMFQRLRKYKLRLNPNKCTFGVRSGKLL FT GFIVSQKGIEVDPDKVKAIREMPAPKTEKQVRGFLGRLNYISRFISHMTAT FT CGPIFKLLRKDQGIVWTEDCQKAFDSIKGYLLEPPILVPPVEGRPLIMYLT FT VLEDSMGCVLGQQDETGKKEHTIYYLSKKFTDCESRYSMLEKTCCALAWAA FT KRLRHYMVNHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQ FT KAIKGSILADHLAHQPIEDYQPIKFDFPDEEIMYLKMKDCDEPLFGEGPDP FT DSKWGLIFDGAVNVYGNGIGAVILTPKGTHIPFTARLRFDCTNNIAEYEAC FT IMGIEEAIDLRIKNIDIYGDSALVINQIKGKWETHHDGLVPYRDYARRLLT FT FFNKVELHHIPRDENQMADALATLSSMIKVNHGNDVPLISVKFLDRPAYVF FT AAEAVFDDKPWFHDIKVFLQTQEYPPGASRKDKRTLRRLSGNFFLSGDVLY FT KRNFDSVLLRCVDRREADLLMHEIHEGSFGTHSSGYSMAKKALRAGYYWIT FT MHADCHHYAKKCHKCQIYADKIHVPPSMLNVISSPWPFSMWGIDMIGRIEP FT KASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNIICRYGVPNKI FT ITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKKIVQK FT MVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGTEAILPVEVEIPSL FT RVLMEAELSEAEWYQNRYDQLNLIEEKRMAALCHGQLYQTRMKQAFDKKVR FT PREFKEGDLVVKSIKSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTTMDG FT EDLPRPVNSDAVKKYFV" XX SQ Sequence 11878 BP; 3393 A; 2357 C; 2629 G; 3499 T; 0 other; gaaatggcga cttcactggg gacttaaatt ctacgcgggt taaacccacc ttatttttat 60 tttattttgt gctgtactat ttgtttatgc tttgtgcata tttgcttgca taccttgtta 120 cgtgagtggt gagataagtc ctacacccgg gcttgagtga agcataagat aggacggagt 180 acgatcatag tgccatacca ggagcggtcc tgcgatatgt gtacacgtga tgtaactcca 240 ctcaacatag gtctttcaaa agtaataata tgtcgtcatg agcagtcgtg attggcgtta 300 ttatttttga agtccgctaa acgttgagga cctttagatc acccttaacc catcttggct 360 ttttttttag gacgtagtgc ggtggctaaa ccaagagcag tcttgacttt ggtcgacacg 420 cgatactaca ctcaaactag acttacttat ggatgttatt ggactaggag cggtcctata 480 caccgatatg ttcataaggg aagttgtaat ttgggaactt ggtagaaccc gtgatacagg 540 tacaatttga aaccatagtc cttaccaaat ggcgttgtca ccttttgact ccaacattgt 600 ggacttaacc tcattatgta ttctatgtac ttcagcataa gcatgcatcc atgcattcat 660 tcataaatgt attttttttc atccattaaa ttgtcgaagg acttagacaa gcattttttg 720 taaatattgt agatggattc taagacgagg agtattaaga agtacacttt caagaaaccg 780 gatttgacaa ggctaaggga gttagcatct catgtgacta atccaagaga ttttcgagaa 840 cgtcatggga gattacttga cctcctcaaa gtgaaggtcg aagatggaat tttagagact 900 ttggtgcagt tttacgaccc aatttgtcac tgcttcacgt ttcccgacta ccagttggtc 960 cccactcttg aagaatattc cttttgggtt ggcttaccag tatccgaggg agaacctttc 1020 aacggccttg aacccagccc caaaaatgca actattgcag aagcccttca cctcaaacct 1080 tctgacttgg ttcatcctca cttcaccatt aaaaacaacc tccaaggctt aaccgccaag 1140 ttcctctacc aaaaagcctc cgactttgtg aaagccaaaa agaccaatgc ctttgaatct 1200 attttcacct tactcatata cggccttttc ttgtttccca acatggacaa ctttgtcgac 1260 ctcaacgcaa ttaagatttt tctagccaag aacccagttc ccactttact tgcaaacact 1320 taccattcta ttcaccacag aaatatccga gagggtggac tgattgtttg ttgtgcaccc 1380 ctgctataca gatggtatgc ttcacattta actaagtctg tcttctccaa agagaactcc 1440 gggaaagctt cttggtctga gaggatcatg cctctcactc cagctgacat tgtgtgggtc 1500 catgcgggta ctaacaccgc aggaattatt ggcagttgtg gagagtttga aaatgtgccc 1560 cttatcggta cgtgtggagg aattacttac aaccctactc ttgctatgcg tcagtacgga 1620 taccctatga aggggagacc tgacagtctt tctctgtcca atgagtttta tcttaacaaa 1680 aatgatcata caaatttgag gatgcggttt gtgcaagctt ggcactctat tcgtaagttt 1740 gatggaatcc aattgggaag aaaacagagc tttgcacatg aatcgtatac acagtgggtg 1800 attgatagag ctacagcttt tggtatgcct tataccttgc caagattctt atcttcgacc 1860 gttccagaaa tacctttacc tctactccca caaaccaagg aagagtacca agagcgttta 1920 gccgaagcgg aacgtgagat acatatgtgg aaaagggagt gtcagaagaa ggataaggat 1980 tatgagactg taatgggctt gctggagcaa gaagcctatg atagccgaca gaaagatgtg 2040 ataatcgcca agctgaatga aagaatcaag gagaaggatg ccgcccttga tcgaattccc 2100 gggcgaaaga agaagcgtat ggatctcttt gatggtccac attctgattt tgaggattag 2160 tccgcttcag gagcttgaga gtctcagttt gtttttcatg tctttttctt agtttttctt 2220 tatgtatttt ggagtctatc ccttgactca gtttgttaaa agggaattat ttgtgtttta 2280 ctttaaagtc tatctcttgg ctttgttgtt agaaagggaa ttatcttgtg atcaactttg 2340 ttttttagtg aattgtttag gttgatatgt ttacaaaatt gcttctatag gtccttcgat 2400 aaaaaaaata tatatataaa aattgcatat tctggcatat agcatatcat gcatcatatt 2460 gcattcataa aaagtgtcaa agccaagtct catactttcc tcatttctgc ctcaggagaa 2520 aagcaaaggt ggcccggcgt attcagtaca aacctacccg tgttcatcat acccgagcat 2580 acatcaagaa gaaaatggca gctgctgaac aaacgaacaa tgatcttagg gaggaggtta 2640 gtagcctcaa agaaggtatg gaaaagataa ctgcaatgat gatggacatg atggccgcac 2700 aggcacaagc ctctcaagca aaaattgttc agactgttca gggagatgtt gaagtctctc 2760 agcctgcggg ttctactgca actattagta ctacacagcc cttggtgaat cagttttcct 2820 ctggtgatat gacaaatatg tatagttcag ggtttcgtcc tactggctct cttggttctt 2880 ctattcctcc tcagtatcat atgccgccag gctatccgtg gggcatgcca ctcgcaaata 2940 atgaaggtgt tcgtcataat gcaccagaaa tgcagttccc ttttggacat caacaaacac 3000 cgttttatca gtccggccag ccttttcctc aggccactat gacctatgct ggacccctcg 3060 ttcatgctgg tcatcaagaa gtagaacagg tttatcactc taatagtgtg gctggtgatg 3120 atagggtagg aaacttggaa gaaaggtttg aggcggtgca caaagagtta aagactatcc 3180 gtggtaaaga aatgttcagt cagaatgtga atgacctctg cttggttcca gatgtggtga 3240 tacctcataa gtttaaaatg ccgatctttg aaaagtacac aggggatact tgccctgaga 3300 tgcacttagt cacatatgtc aggaagatgg tagctcacaa gaataatgag cctctgctta 3360 ttcactgttt ccaggacagt ttgactggtc ccgcacacac atggtatatg aatttgaagg 3420 gcatcacaac ctttgaggaa ttggccaatg ctttcatcca acagtacaag tataactctt 3480 atctggcacc taaccggaaa gaactgcaat ctatgactca gggtgataag gaatctttca 3540 aggaatacgc tcaacgcttc attcaaaagt ctgctcaaat ccgtccgcct ctggatgaaa 3600 gagaagtgtc cgatctattc tatgagactc tgagcccttt ctactcagag aagatgcttg 3660 gttgtgcctc acaaaagttt actgatatgg tagatatggg tgtgcgcatt gaagattggg 3720 tccgtaaggg acgtgtgagt aaagatggtg cttcttcagg tggttcatct aatggtaata 3780 ggaagttcgg aaatgggtcc tcaaagaaga acgctcaaga ggttggtatg gtggcccatg 3840 gcggatccca gcctatatac cctagctacc cgtatgttgc taacattcca ccacctaccc 3900 taactccaca aaatccaaac tatcaactac aaaggcctca agcaccccat ccatattatc 3960 caccactata tcaaccacaa ccttatcaac cccaaccgtt ttatcaacaa ccatactatc 4020 ccccaccacc tcaacaacaa cagcctcgcc ctcgagctca acaacaacat actcgccctc 4080 aaagaaacca atttccccct atccccatga catatgaagc cttgttacct tccttgcttg 4140 cccgaggtct tgttcagacc ctaccacctc ctcgtgtgca gaacccttta cccccttggt 4200 tccgtgctga tcgaaattgt gccttccatc aaggggcacc aggacacgac attgaacact 4260 gttaccccct taaagaggca gttcaaaagt tgattcacaa caaagattta tccttcactg 4320 acccgaaccc tgctgctcca gaccatcctc tgccacccca tgggcctact gttaacatgg 4380 ttgaagatta tcaagaaggg ggtcttgtca ctcgctctca ggatatcaaa actccgttgg 4440 ttccattaca tgtgaagatg tgtgaggcag ctatgtttag ccataatcat aatagttgtg 4500 aggtatgttc tgtggatccc cgcggttgcg cgcaagttca agatgatgtg caagggctaa 4560 tggatcggga agagctggtt gtcacaaggg aagagaagag tgtctgtgtt gtaatccctg 4620 tgttcaagga tagtgcgaaa ccaattgatg gtgttactcc ggtgttcaag gacagttcca 4680 agccagctgt cgctcctctg gtaatttgtg tgccgagacc caagccgttt ttctctcaaa 4740 acgccatgcc gtataattat gaacctacaa gcatagagaa tggtaaagaa atatcctgga 4800 gtccctcaac ttccgtgagt aacattgcag agaatagtca aattctgaga agtggacgca 4860 tccttccggc agttgtgcaa gcaaagaaga aagctccggt gatagagtca gtgccaatac 4920 cagatcctag caagggtaag agtatggttc aacctggtga aactgataat gatgagattt 4980 tgaagctgat caagaaaagt gattataaga tagtggatca gttattgcag actccatcaa 5040 agatttctat catgtcacta ttgacaagct ctgatgctca tagggatgca ttgatgaaag 5100 tgttgaatca agcctacgta gaccatgatg tgactttggg tcaatttggg agcattgttg 5160 gaaatgtgac ggcatgcaac aatctgagtt tcagtgatga agacctccca gtggagggga 5220 agaaccataa tatggccttg catatctctg ttatgtgcaa aacagattct ttgtccaatg 5280 tcttgataga taccggttct tccctcaatg tgatggcaaa gacgaccttt gataaattga 5340 catattcaga tggattcatt aggcctagtt gtgtatcagt aagggcattt gatggatcca 5400 ggaagacggt atggggagaa gtagatttac ctatcactgt tgggccccaa gagtttaaag 5460 ttacattcca gataatggat attcaagctt cctacagctg tttacttggt agaccgtgga 5520 ttcatgaagc cggggcagta acatccaccc ttcatcaaaa gttaaagttt gtgagtcgtg 5580 gaaaacttgt tacagtaagt ggggaatcag cttttttggt tagccatttg tcgtcttttt 5640 ccttcattgg tggtgaaagt ccggatggaa cgtcattcca agggctttcg gtcgaaagcg 5700 gtactacaag aggtgaaaca tgcatggcct ctctaaagga tgctcagaga gtaattcaag 5760 aaggaaaagc agaaggttgg gggaagttag tacagttgcc tgagaacaag cgcaaggaag 5820 gtctgggttt ctccagcaat aatcaagtga tgttcgaccc aactagaggt acttttcaca 5880 gtgctggatt cattaatgcg ccacctgaaa ctaatgcaat cttggaagat caatcagaag 5940 aggtggcacc tgactttgtg actccgggtg gaaactgctg caattggatt gctgttgaca 6000 tcccttctgc gatacctctt tctaagtaat gtgtttgtct tttttgttgc ttttttaaga 6060 aaactccttt cgtcctaccc cagacgaagg tgaaatcttg tagggtttgt ttttgctttg 6120 agtttatttt cagtattaat gaaaattgtc gtttctgtca cggccgttat tttattttag 6180 tgctttttct ggaaaaatgg taatacaaaa aaccaaaaaa cttgttctct ttttctttta 6240 aaaaaaaaat atcaatttca aaggtctgca ttcactcttt tgctaaaaaa tcaatcatga 6300 atcatatgca gactgaacat acatgagccc gttgaacata gtgaccctat gctgccttcc 6360 aactttgagt tcccagttta cgaagcttgg gtagaagagg atgaagagat tcccgatgag 6420 ctccgatgga tgttagagca agaaagaaaa gcctttcagc ctcacaagga agaaatagag 6480 ttaatcaacc tgggcactga ggatgataaa aaagaaatta agattggagc gtcgttggag 6540 gcgtctgtca agaaaaagat aattgagctt ctcagagagt atgatgatat atttgcatgg 6600 tcctacaaag acatgccggg gttagaccat gatgttgtgg aacaccgttt gcctttgaag 6660 cccgagtgtc ctccagtcaa gcagaagtta agaagatctc atccagatat ggctctcaag 6720 atcaaagagg aagtgcgaaa gcaaattgat gcaggtttct tgattacctc tgaatatcct 6780 caatggttgg ccaacatagt gcccgttcca aagaaagatg gtaaggtcag aatgtgtgtt 6840 gactatcggg atttgaacaa agctagtccg aaggatgatt tccctttacc tcacattgat 6900 gtattggttg atagtactgc tagatgcaag gtattctcct tcatggatgg attctccggg 6960 tataaccaga tcaagatggc tccagaagat agagaaaaga cgtcgttcat cacgccttgg 7020 ggcgcgttct gctacttagt aatgccgttt gggttgataa atgctggtgc cacttaccag 7080 agaggcatga ctaaaatatt ccatgatatg atacataaag agattgaagt gtatgtggat 7140 gacatgatcg tcaaatcagg cactgaagaa gaacatgttg agtatttgtc gaagatgttt 7200 caacggttga gaaagtacaa actccgtttg aatcctaaca agtgtacctt cggtgttaga 7260 tccggcaagc tcttgggttt tattgtcagc cagaagggta ttgaagtgga tcccgacaaa 7320 gtcaaagcta tcagggaaat gcctgctcca aagacagaga aacaagttag aggttttcta 7380 ggaagactga actacatctc cagattcatc tctcatatga ctgccacatg tgggccgata 7440 ttcaagttac tccgtaaaga tcaagggatt gtttggacgg aagattgcca gaaagctttt 7500 gacagcatca aagggtattt gttagaacct ccgattcttg tccctccggt cgaagggagg 7560 cctttgatca tgtatttgac tgtgttagaa gattctatgg gctgtgtgtt gggtcaacaa 7620 gacgagactg gaaagaaaga gcacaccatt tactacttga gtaagaagtt tactgattgt 7680 gagtcccgat attctatgct tgagaaaacc tgttgcgctt tggcatgggc tgctaagcgt 7740 cttcgtcact atatggttaa tcacactact tggttgatat ccaaaatgga tccgatcaag 7800 tacatttttg agaagccggc tttaacagga agaattgctc gttggcagat gttattgtcc 7860 gagtatgaca ttgtctaccg cactcagaaa gccatcaaag gtagtattct tgctgaccat 7920 ttagctcatc aaccaattga agattatcag cctatcaagt ttgatttccc agatgaagag 7980 atcatgtatt tgaagatgaa agattgtgac gaaccattgt ttggtgaagg tcctgatcca 8040 gactctaagt ggggtttgat atttgatggg gccgttaatg tctatggtaa tggaataggg 8100 gcggttatcc ttactccaaa gggtactcac attcctttca ctgcaagact ccggtttgat 8160 tgcacgaaca acattgcaga atatgaagct tgcatcatgg gtattgaaga agccattgac 8220 ttgaggatca aaaatattga catatatgga gattcagctc ttgtgattaa ccagatcaaa 8280 ggaaaatggg aaactcacca tgatggtttg gtaccttaca gagactatgc aagacgtttg 8340 ttgactttct tcaacaaggt ggaactgcac cacattcctc gggatgagaa tcaaatggca 8400 gatgccctag ctactttatc ttcaatgatc aaagtgaatc atggcaatga cgtgccgctg 8460 atcagtgtca aattccttga taggcctgct tatgtgtttg cagccgaagc agttttcgat 8520 gataagccgt ggtttcatga tattaaggtg tttcttcaaa ctcaagagta ccctcctggg 8580 gcatcccgta aagataagag aactttaaga agattgtctg gtaacttctt tctaagtgga 8640 gatgttttgt acaaaaggaa ctttgattca gttttgctcc gatgtgtgga ccgacgagaa 8700 gcagatttat taatgcatga gatacatgaa ggctcatttg ggacccattc tagtggatat 8760 tcaatggcta agaaagcatt gagggcaggc tactactgga taacaatgca tgctgattgc 8820 catcactatg ccaagaaatg tcacaagtgc cagatttatg cagataagat tcatgtacca 8880 ccgtctatgc tcaacgttat ctcgtctccg tggccgttct ctatgtgggg cattgatatg 8940 attggtcgga tcgaaccaaa agcttccaat ggacatcgtt tcatactagt ggccattgac 9000 tacttcacca agtgggttga agcggcttct tatgccaatg tgaccaagca ggtggtggtc 9060 cggtttatca agaacaatat catatgtcgc tatggtgtcc ctaacaagat tatcacggat 9120 aatggtacga atttgaacaa taagatgatg aaggaattat gtgatgattt caagattgag 9180 catcataact cttctcctta tagaccccag atgaatggtg cggtcgaagc tgcaaacaag 9240 aatatcaaga aaattgtgca gaagatggtg gtcacctata aggactggca tgagatgtta 9300 ccctatgctt tgtatggtta ccgtacttca gtgcgtactt caacaggggc aacccctttt 9360 tccttggtgt atggtacgga agcgatactt cctgtagaag ttgaaatccc gtctttgaga 9420 gtcttgatgg aagctgagtt gtcagaggct gaatggtatc agaataggta cgatcagttg 9480 aatttgattg aggagaagcg catggctgct ttgtgtcacg gacaactata tcagacaagg 9540 atgaaacaag catttgataa gaaggttcgt ccccgtgaat ttaaagaagg agacctagta 9600 gtcaagagta tcaagtcttt tcaaccagac cctaggggca agtggacacc taattacgaa 9660 ggtccctatg tagtgaagag agctttctct ggtggtgctt taattcttac aaccatggat 9720 ggagaggatt tacctcgtcc tgtgaattct gatgcagtca agaaatactt tgtctaaatg 9780 tttataaaag aacagctcgg taggttgaaa acccgaaagg gcggcctaaa ccaaaaatga 9840 gcgtctcggt ggactgaaaa cccgaaaggg cggtccaggc aaaaattaga gacaaaaaaa 9900 aaaaaaaaaa aaaaaaatat atatatatat atatatcctg atagattgaa aacccgcaag 9960 ggcgatctat gcaaaattta aggattatga caagtaactg catcagatga agcatcactc 10020 acttggggca cctaagccgt caaaagatct tcgatattga agcaatcgaa atagtggaat 10080 ccaaagttgg taggaagtat gatggttatt gtgttcaatg taccttcccc atattaatta 10140 ccatgttcca aactttgtga tctgtggtgc catacctttg gttggttacc atttatttta 10200 aatcaatttg agcccgtgcc ttttatttga agttcctatt tattctatgt gcaagttctc 10260 ttccattttt actgttaata cttgaggtaa aaactttgaa aattcctttt aaaaaaaatc 10320 tttatgtttt cttttggaaa aagcaaaatt gacaaacatt ttatctttaa ttcacgtatc 10380 gtagaaacat gtgtcaatgt tcgattcaaa agcacgggta tggtcattgc taaaaaaata 10440 taaaaaaaaa aaaaaaaaaa aaaaaaagaa aaaaaatgaa ctcgctaagt tgaaaacccg 10500 aaagggcggc ttaggcaaaa aagagcatcc cggtggattg aaaacccgaa agggcagtcc 10560 aggcaaaagt tagggatttc aaagtatacc aaaggaaaag caatgactat ttgaagcatg 10620 agcttgtgaa agtactccag ttcaatccag aaatggcgac ttcgtctagt ggtctgacta 10680 ttggttcatt gccccatcag tgttttgctt aaagggttgt gccctgatga agattaccgg 10740 gttgtttgta ctatggtacc gggccatttc cgttctggac ctgcccaatc acccctcaaa 10800 aatcttgcca ttgtattgtc atatgtgtct catacatatt cattcattca tgcatagata 10860 gcacgcatac aaatatcatt catgtatggt tgcattatta ccaggtgtct tatttcagtg 10920 tgtcccgtaa aaagtatctt ccccaatgtg tttaattcaa ggttgtcacc agttaaagct 10980 tatttcaagt ggcaggtccc tccgagcaat ctttgtgtca attcagttta gctccccagt 11040 aacttttgta agctatcctc gtactggtag cagttgactt ttattatgtt ggtcgttacc 11100 cgagttgagg taactgacgg tatttatttt tcgtatgttg gtcgttatcc gagttgaggt 11160 aactgacggt atttattttt cgtatgttgg tcgttacccg tgttgaggta actgacggta 11220 tttcctttcc ttttcgtaag ttggtcgtta tccgaattga ggtaactgac ggtttttcct 11280 tttcttatcg tatgttggtc gttacccgag ttggggtaac tgacggtatt tccttttcat 11340 aagttggtcg ttatccgagt tgaggtaact gacggtattt atttttcgta tttcggtcgt 11400 tacccgtgtt gaggtaactg acggtatttc cttttcataa gttggtcgtt atccgagttg 11460 aggtaactga cggtatttat ttttcgtatt tcggtcgtta cccgtgttga ggtaactgac 11520 ggtatttcct ttttgtaagt tggtcgttac ccgtgttgag gtaatcgaca gtattttctt 11580 ccgtatgtcg gtctttacct tagtaagggt aatagacaat ttttctctcc gcataatggt 11640 aaatggtttt cctccccaat aatatttatc tgtatgtccc ccagtcagta ggtgttcact 11700 atccttgcat tcgtaagtgc atcgtaagta ttcatattat tacagtcatg agcatggcat 11760 tcttagcatt tcaattggtc aaaattagcg tacttaatat ttaagtctct cccacccatg 11820 gattctaaag ttgatatttg taaatccctg tgacggagaa acttaaatag gggcatct 11878 // ID Ogre-LE1_I repbase; DNA; DCOT; 12262 BP. XX AC AC171735; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-LE1; Ogre-LE1_I. XX OS Solanum lycopersicum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-12262 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC171735; Positions 64613 76874. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 5739..5901: putative intron. CC Note: ORF2+3 (gag-pol) disrupted by mutations generating several CC stop codons and the frameshift from 7723 to 7762. XX SQ Sequence 12262 BP; 3670 A; 2686 C; 2464 G; 3442 T; 0 other; gaatggcgac tctgctgggg atgttaggtt cttaccatta cgtgttaact gcttatttat 60 gtggggttta ttttatttat taggtgctta ccatgttttg ttgccctatt tattatctca 120 tcttcatgtt cctccctttc ccttttcctt aattgtttat tatcatgttt cacctcttcc 180 ctctcccctt atttgtttac atgtttaatc tcgtatcctc ttgttttatt tgcgtagttt 240 tcatgtctac tttcctttat ttatgcttat ttatttattg tttataaact gtctatatgt 300 taccgttttc caatttaaat gctaaatgtt tactgcttta ataaattggc atcccgctca 360 tacttccccc caattgggac cctcttcctt ttttattttg ttctcgtgat gttgtgcctt 420 tgcacctctc acaactactc caatcttata caaataccca ttatagagag tcggcatatg 480 cgtggacgta gtggatagtt ttactaccgc gaagccacga gcctctcgca tagaatccct 540 ttcaagtccg tgtcaagcca actcttagaa gtcctggtta agtcatacat gctgcataag 600 acctaggagg tttgaccctt ggtgtcaatc catgtaatta gtagccacct tctcgtctga 660 agggccccaa aacccttaga caaattgcat atttatgtgt caacgtgatc ataataatta 720 aatcaagcca acattgccaa aatggagttt agaagttgtt tgttactttg tttgcagagt 780 catgactcac cctcactttc caaacacgca aatggtggtc aaagttaatc ccattttgaa 840 gacttggtgg aaagatatac aaaaaaatcg agagttagaa gcaaatgaat tgttaggcgg 900 cctcactgct ttgatctccg tagagtcaga tcgtcactta atcaaggcat tgttgaaatt 960 ctgggacact gagaggttag tcttcaagtt cagggatttc gagctaactc caacaataaa 1020 agaagttgga ggattcatgg gtctcgcata caaagagttg gaaataattg ttccacacaa 1080 gccaagtcca agatcttttt tgaagcaaat gggcatgtgt cataatccaa atctactttg 1140 tctgaaagaa ggttggattt ctttagagtt cttatattca cgctttgggg atgaggaagg 1200 tcatcaaaac tttcatagag aatttgcttg ctcttctgca aaatgggaaa ggtatcgtct 1260 taatgcattc gctgtcgtcc tattaggctc attggttttt cctagagaag gaggaaagat 1320 acacaccggc ttatgttatg tggttcgtat gttggctcga ggtgggaaaa ccttggtccc 1380 tatgatactc gcagaaattc taagagcttt gactgcatgc accaaaggca aaagatactt 1440 tgaagggtgt aactttctgc tgcaactttg ggccgtcgaa catttctacc aaagagctaa 1500 taaagtagac atcgtcagat ggactatggg gaacaaaatt atcaaccatc ccctaaggat 1560 gaaacatttt atctcccctg tgggaacaga ggactggttc acatacctaa aggagcggtc 1620 agccgttgaa atccaatgga agtattattg gttgaagcca cgacgtgcca tcataagagg 1680 aaatgaactt tacttcattg agcttatcgg tttgaacggt gtgcaaccct acgcaccact 1740 tcgagtcctt cgacaattcg gacagatcca aatgatacct ctacgatccc acatgagcca 1800 ctatggatat gactttgggt cagaattacc gcaagtgaac accatactac gaagatggaa 1860 gaatgtgata actatcgatg ttcaagagca ccgacccttc tgcacacctg aatattatgt 1920 atggctttta gaagatgcag agcatagaga tttaagcgaa ggaggtcttc ctggttttgg 1980 cgatgaaaaa gagagaagat gggctcgcaa cctcctcaac actgattatg acattaccct 2040 agaaatgaag aagcagattg tgcctaacat tggagagcaa catgattaaa gcttttaatt 2100 attatttatt tctctttact ccccatatgt tatccctagc cctttagtta tctttagatt 2160 gatgtaataa acagaaatta tttcaataat cgaaagttgt tctattatct aactctaaac 2220 tccaaattgg caaataaggc ttgaattaat tattatgcat cacttatgtg tcgcttaggc 2280 ctacctctgg ctcaacgagg ttccttgcat ttagggcgtt tatttcaaaa caacgtgttg 2340 atattgtgat attatcttaa cccctaactc ttttcttttg attctattgt tttcacattt 2400 cctaaggttg atctgtcctt catcctggca catacacgat caaaagggac ccccccttct 2460 ccttcttctc aaagagcaag ctcaaacgac aaaggaaaaa tggttgacga caacagcacc 2520 actgaaaggg tagaagcttg tgagggagga caacttcata gtaatcttat cctaagactc 2580 gagcgcaaga tttcgcaatt ggaagaagag gtagccaaca tgcgtgattt ggccaagttg 2640 tctatctctc ttggaaccca atttggagaa aacatagaca atcctcctaa tcaaacagcc 2700 acgccagaca atcctccaat ccatatatcc ccacctgaac ccattcgtcc aaatgccttt 2760 ccaccacccc acgcccaaaa tacccaattt ccatttcacc actattacca acataccaaa 2820 ccaactgtcc cagaaacaac cccaaacaca aatatcccac atacttttga aaacaacaat 2880 cccaatccca tatacgttga aactgcccct ctgactcatg acctccatga gtcagagtcc 2940 catcagaaag acatcttaat aaaaaccctg actgagagat tagacaactt gaccaacagg 3000 gtacaacacg tggaaggaaa caaaaagttg ggaggattgg gctatgaaga tctgtgcatg 3060 catcctgatg tggaactgcc cgaaggatac aagcttccga agtttgagac gttcaatggc 3120 attggggatc ccaaagccca cctacgaatg tattgcgaca aacttgtagg ggtgggaaga 3180 gatgagagga tactcatgaa gttgttcatg aggagtctta ctggggaggc cctatcatgg 3240 tacattgagc aagactcgcg gaaatggata aaatgggttg atatggcaac tgacttcatg 3300 aataggtttg gtttcaatat tgaaaatgcg cctgattggt tttacattca gaacctaaag 3360 aagaaaccga gtgaatcctt cagagaatat gccataagat ggaggtctga ggcggctagg 3420 gccagacccc ctatggaaga atctcaaatg aaagactatt tcatccgtgc ccaagaacta 3480 caatactatg accgaatgat gctggtggct gaaaagagtt tcgctgaaat catcaaacta 3540 ggcgaaagaa ttgaagaagg cataaagaat gggactatca tcaacttgga ggctttacaa 3600 gcaaccaaca aggctctgca atctggtgga atgacagaga gtcgaaagaa aacaggttct 3660 gtaatgatgg ctcatggaac taggacccct ttgaggcaca agacaacaaa cccaccacca 3720 tccccatacc ctcacacccc ataccttcac accccatacc ctcaacatcc ctcagctcca 3780 ccccctatat ctccccaacc catgccaata tattaccaaa atgctcctcc tcaatatttg 3840 catgcctcat atcctgtcta taatgttcaa ccaacacact tctaaactcc accacccact 3900 caaacaccaa attaccgaaa cagaccttcc tatgaaagaa gacctacaaa aacctatacc 3960 cctttggctg aacccatagc acaactttat gagagactga aacaagctgg gtacgtctct 4020 ccaattcctg cattacctgt ggacgttcgc gcgaaatggt acgaccctaa caaggtctgc 4080 gcctaccatt ctgggatgaa gggccacacc accgaagttt gcagagccct taaggataag 4140 gttcaaatgt tgattgatac aaagaccatc caactgaagg atcctacacc gaatgttgcg 4200 aataatcctc tccctaacca tcaagtcaac atggtggaag ctggtgatgt ctgggattgg 4260 gaagaatcta tctgggccgt cgaaacagag gaagccatgc ctaccactgc ccaggcacca 4320 ctaatagtgc aaggactcgc cccatttgaa gtagaagttg ctgcacccag accaccattc 4380 gctgtctata aggcatcctc cccaacacaa tgtgacacac atgctgtacc ttgggattac 4440 aacaaaagag aaacaaatgt ggaagagaca gatgttgcaa caggggtcac cagatctgaa 4500 agaatttaca cttctgaaaa tttggttcag ggaagctcta gcaaatccaa agcgccaatc 4560 gtagagctcg aggatcaaag tatttggaaa aaggttaaag ctaaagaata ctctgtcatt 4620 gagcagctga gtaaaacccc ttcccaaata tcaattctgg agttactaca atcttccgaa 4680 actcatcgag atgcccttct gaagatcctt ggtgaagctt atgtcccgtc taacatcact 4740 catggagagg tatcccaaat ggtggggcag gtctttgagg cttacaaaat atcttttcac 4800 aaagatgaac tgccaatcga aggaacaact cacaataaag ctttgtacat ttcggttcag 4860 tatcaggata aggtgataaa caaagcatta gttgatgcag gttcaggttt aaacatttgc 4920 cctctgagca cactgacgag gctgggtgtg gatagtgcaa aaattcagac atggaagatg 4980 aatgtgaggg catttgacgg ctctcagaga ggcactattg gggagataac cttggacatg 5040 ctcattggtc ctgtcacttt ccccatagct ttccaaattt tggacatccc ttcatcgtac 5100 aacttattat tgggtcgtcc atggattcat atggctggag cggttccatc tactcttcac 5160 caatgcctga agtttgaatg ggattacgaa gaggttgtgg tccatgggga aaaagggcat 5220 cctgtataca cgattgaagg aagagagaat atggatggcg aaatgtacca tacagtggag 5280 cttgttggta atattgagtt gcaaccttgg ttcagccaaa aaatcataga tatgatggcc 5340 tggttcggtt tcgagcttgg gaaaggtttg ggggctaaat tacaagggat agtcgaacct 5400 atacagcctg ttcgacattc caccactttt ggtttgggtt ataaatacac caccgaagaa 5460 tggctcgatt ggcgaccacc tagagatggg tactactatc cattgaagaa acccataccg 5520 ccattgtatc aatcattttg atcagcaggt ttcatgggag acaatattga tgagatctca 5580 gacgacttga aggggttatc gctaaccaaa gaagaaggga aagtttgcaa cgtcgtgatc 5640 aacgaggagg agaaaggggg ccctagtgga agcaaagagg caaagatcag cgtcagcaac 5700 tggacctcga ctccatccag acctcgtcga gcatctgggt agctttggaa gatgtttttc 5760 tatcaaattt taattcaaat aaaggagttt ttaataaacg ttttaattcc cgtccatgta 5820 ttgctttcaa atgaggactt atgaaatttt caaatcttta tcaataaagt tcttttcccc 5880 atttttttgt cttgtattta atttttacta tttttttttt ctcaccagca aaattcatta 5940 taaaaatgtc gaatctgaga ttgtggcata caatgagact gctcagctta accttaatga 6000 cttagaagaa gtcgaagaca atgaggttcc cgaggagtta atcaaaaggg ttgaggaatt 6060 cgaggaaaaa cccaatccaa atttggtaga gacagaagtg gtgaatttgg gaaatgcaga 6120 ggtgatacaa gaaacccgag taagcatcca tatgacaaaa gaagacaaga aagagtatac 6180 cgagtttctc atagagaata aggatatttt cgcgtggtcc tacgcagaca tgacagggct 6240 aagtactgca atcgtagccc atcgactacc cactgatcca gcatgtcctc cggtaaaaca 6300 gaagctgaga aaatacaagc ccgagatgag tttgaaaatc aaagaagaag tatcaaagca 6360 attagatgtt gggatactcc aagtgacaga atacccaact tggcttgcaa atgtcgttcc 6420 agtgcccaag aaagacggca aggtcagagt ttgcgtggat taccgagatc tcaataaagc 6480 tagccctaaa gataactttc cattaccaaa catacacata ctgattgata attgtgctaa 6540 gcacgaaact cagtcatttg tggattgctt tgccggctat catcaaattg agatgcacaa 6600 agacgacgct gagaaaaccg ctttcatcac gccgtggggc gtctataact acaaggtgat 6660 gccttttgga ctaaagaacg ctggagctac gtacatgaga gcgatgacta ctttgtttca 6720 cgacatgatc cataaggaaa ttgaggttta tgtggatgat gtcatcatca aatcaaagga 6780 aagtttaaat catttggagg atttacggaa attctttgcc aggctacgca agtacaatct 6840 gaaactgaat ccggcaaaat gtgtcttcgg tgtgcctgct ggaaagcttt taggtttcat 6900 tgtcagtcgt cgaggtatag aattggaccc gtcaaagatc aaagccattc gtgatcttcc 6960 cccaccaaag agcaagaagg aggtaatgag tttcttgggg cgacttaact acatcagtcg 7020 tttcattgct cagtctactg tcatctgtga acctatcttc aagctgttaa aaaaggatgc 7080 tgcagtgaaa tggacaagtg aatgtcaaca ggcatttgac aagatcaaag actatctatc 7140 caatcctcct gtattggtgc caccagagtc aggtagacca ttacttttgt atattttagt 7200 attggataat gctttcagtt gcatcttggg acaacacgat gaaacaggga ggaaggagca 7260 agcaatatat tatatgagca agaagttcac gtcgtgcgaa gcccgatact ctctattaga 7320 gcgtacctgt tgtgctctaa catgggttgc ctaaaagcta cgacattacc tctcatcgca 7380 taccacttat ctgatttcaa ggatggatcc tttgaagtat atctttcaaa agcctatgcc 7440 cacaggtaaa ctggcaaaat ggcagatact gttgagtgag tttgacatag tgtatgtcac 7500 gcaaaaagca gtgaaaacac aggcactagc agaccatatg gcagagaatc ccgtggacga 7560 tgattacaga ccgctgaaga cctacttccc agatgaagag gtggcgtttg tgggagagga 7620 catttctgaa gaatatgatg gatggagaat gttttttgat ggagctaaaa atctgaatgg 7680 atgcggcatt ggggctgttt tgatctcacc caccgggcaa cattatccag tatcagcaaa 7740 actcagattc ctttgctcaa aaatatggcc gaatacgaag cctgcatact aggtctccga 7800 cgggcgatcg acttggatgt ctaggaaatg ataataatag gggattcaga cctattgatc 7860 catcaggttc gaggtgattg ggcaacaaaa aatcgaaagt tgttaccata tttggagtgc 7920 gtgcgcaggc tatgtaaaag gtttgtcaaa acagaattta gacatgtacc aagggtccaa 7980 aatgaatttg cagacgcctt agccactctg tcttctatga ttcgacaccc tgatcacaat 8040 tacatcgatc ctattcacat tcatatacat gaacaaccag cttattgttt ccatgttgag 8100 gaagagcctg atggaaagcc ctggtatgat gacattagaa gatatttgaa gagtggtgaa 8160 tacacagaag atgcaacaag tgtacaaaag cgtacaattc gaaggttagc aacccaattc 8220 ttcttaagtg gggaaatact ctatagaaga actcccgatt tgggactgct aaaatgcgtt 8280 gaagcaagag aggctcgcag gctggtcgaa gagatacatg caggcacctg tggtcctcac 8340 atgaacggtt ttacattagc aaagaagatt ctgagatcag gatattattg gctaactatg 8400 gagacagact gcattcgcta cgcccagaaa tgccatcaat gtcagactca cgcagatatg 8460 attcgagtac ctcccaacga actccatgtc actagttcac cttggccgtt cgcagcatgg 8520 ggcatggatg tcattggtcc aatcgagcca acagcatcca acgggcacag attcattctt 8580 gttgcaattg actatttcac caagtgggtt gaggccacct cccataaatc agtgacaaag 8640 aaagttgtgg atgactttgt caaaaacaac attatttgta ggtttggaat tcctgagtca 8700 atcatcaccg ataacggcac caacctaaac agtgacctga tgagatcaat gtgtgagaag 8760 ttcaagatca gtcatcgaaa ctctacagca tacaggccac agatgaatgg ggctgttgag 8820 gcggcaaaca aaaacatcaa aaggatattg cgcaagatga tcgataatca caaacactgg 8880 caggaaaagt tacctttcgc attgctgggg tatcgtacca caatcagaac ttccacaggg 8940 gccacacctt acttcttagt atacggcacc gaagctgtga tacccgccga agttgagata 9000 ccttccctaa ggatcatcca agaagcaaag ttgagtgatg ctgattggat acgaggtcgg 9060 gcagagaatt tggcattaat agatggaaga agaattaacg ccatttgtca tggtcagctc 9120 tatcagaata gaatggccag agctttcaac aagaaggtta aacccagaca tttctcacct 9180 gggcaactgg ttttgaagcg gatttttcca aatcaagacg aggcaaaggg taaattttca 9240 ccaaattggc aaggtccata catagtctct cgagtactga caggcggagc cctcatactt 9300 gcagaaatgg atggagaagt ttggccaaaa cctatcaatt cagattctgt gaaaaagtat 9360 tacgtctaga gattgattca tgctcttttg taatttggaa ctacgtcaga cctgattccc 9420 atttaagagg ggatacgtag gcgctcctat ggggttcggt cttattataa ataaaacttt 9480 catttctccc ttttctactg ataactgggg cagaattttt gagaggatct caaaaattcc 9540 atcaagactt ctcctggcac atcttcatac tggggcagaa attttgagta aactcaaaat 9600 ttcaccaaaa gtttcttctc aacaagcagt cagcttacaa cgaagattaa atgatagctc 9660 cacttttgag tcagacgttg taaagtctca acctatgcca tggtcaaaga ttcgacatca 9720 gcttttatta aatgataatt tcaaaatctt tgaaagtttt gtttttatta ttattatttt 9780 ttctctcctt ttcccttttt ttttatgaaa aaaaaaaaca aacgctcgaa gaggtgtgga 9840 tggcaagcca aaggagcacg ctgcgccaaa tcacggatac agatcaacct tcccccgttt 9900 aaactaacta tttttctttg aatgtagaaa atacaggtac atatacaaag gcaactgcaa 9960 caatcaacat cacaacattt gagcccgaca tatgacactc gatccttcca ataaggcgga 10020 cgcccaagct actgtatgcc ctcaagcaac tactgtgctg acaaattaca ttatgcccga 10080 tattgcatca tttcgcacct acgcttgata tcaccctatg ctcaaagaac tacatcatta 10140 tgttatgccc gagaatgccg aaatgcatca tttcatgtgc ttgacatcgc atgatcccga 10200 agaaacacat tattgcacgt gctcgatata tcatatgccc gaggaaatac atcatcgcat 10260 atgcccaata ttgacttatg ctcgaagaac cgcattattg catgcgctcg atattttatg 10320 tgcccgaaga aatgcatcat tgcatgtgct cgatatttca tgtgcccgag gaaacacatc 10380 atcgcatatg cccaatattg acttacgctc gaagaattgc attattgcat gcgctcgata 10440 ttttatgtgc ccgaagaaat gcaccattac atatgctcga tactgcatgt gcccgaagtt 10500 tgcataagct caagattgca tcgtgctcga agtttacatg tgcccgaatc aaatcaagtc 10560 ataagtatca acagacgtca aaaacagata cgctctcttt actcattagt tatattccaa 10620 aggcgtcatc ctccaaaggc gtcatctttc atggcctgcg gacttcatgt catgacctga 10680 ggacttattt tatgcatatc atgttcctaa ggcgtcatag tctaaaggca tcatcctcat 10740 ggcctgcgga catcatatca tggcctaagg gtttaatttc tgtctatcat gatccgacgg 10800 tgtcatagtc taaaggcgtc attttcatgg cctacagaca acatttttca tgacctgagg 10860 atacaccctg catatcatgg ccctagacat catagcctaa gacgtcattt tttcacgatc 10920 ttaaggcaaa cattcatggt caacatggga attgcatcat gtttacattt accgtttatt 10980 ttgatgtgta tgttctaatt actctacata ggttatatta caagttacag atgtgcagat 11040 tacagacaaa gtcgcctttt gaacggctgt tcacttgttt acaagcgacc ctccgacaaa 11100 ttcctggcta ctcgcaccat catttcactc ttcatctatc attcaggcta ccatgaagat 11160 atcttcagat tcaattcgcc actgtgacct actgtctctt catctaggct cgtccgcctt 11220 acaatgcgac atctaggttc gtccgcctta caatgtgaca tctaggttcg tccgccttac 11280 aatgtgacat ctaggtttgt ccgccttaca atgtgacatc taggctcgtc cgccttacaa 11340 taggatattt aggctcgtcc gcctcaaaac gacatttagg tttgtccatc ttatagaaca 11400 tttaggtcgt ctatcttaaa gggacattta ggcttgtccg cctcatagga catttaggtc 11460 cgtccgctta taagatattt tgttcgcttt ataaaacatt taggctgtct gccttaaaac 11520 gacacttagg ctcgtccgcc ttaaaatgac gtttagattc tccatataac tagatatttt 11580 cgtctattaa tatatcttta tagtgtcaaa tctattggag tttgacatca ttcttcagag 11640 atgggttcaa tttttcaaga agttacagac aatcaaggct tgcagtacgt ctcaaacaga 11700 tacgcctttt atcacctctt gtctatttaa tagaactcat attttattat tattggtcat 11760 actttattta tttataagct aacattttat ctagaatttg cagatatgat cgatcgcctt 11820 tgatcacaat tatatcgcta tcctctatca attcttcgcc tttcatactc cgaacccttg 11880 ttcagatgtt gataacccca ctctatcatg ctcttcacgc ttctctgtca tactctttta 11940 gcctctcaat ctctctcttc tcgttactct aatcttatcc attcaagccg atatcgtgcc 12000 ttccaaatac cttaccactc tttcaacttt taagagtttc atttgctctt gaatctagaa 12060 ctacacacga cctgattctc gtataaccag agatatgtag gcgacttaaa accaaagtct 12120 cggtcgtacc cttttttttt caactctact tcgcttcaat tgatccgctg acatctgtcg 12180 tcggtcggac aaaatcggct actaagtcaa cgttggttgc ctgacaattc attcttcatt 12240 ctcaatcaac caaggggcag ct 12262 // ID Ogre-PT2_I repbase; DNA; DCOT; 12216 BP. XX AC AC182676; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 13-APR-2007 (Rel. 12.03, Last updated, Version 2) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-PT2; Ogre-PT2_I. XX OS Populus trichocarpa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus. XX RN [1] RP 1-12216 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC182676; Positions 39382 51597. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 6319..6556: putative intron. CC Note: Coding regions are disrupted by mutations generating stop CC codons at 1709..1711, 3761..3763, 7704..7706, and 9576..9578. XX FH Key Location/Qualifiers FT CDS join(686..1708,1712..2677) FT /product="Ogre-PT2_ORF1" FT /translation="MKRILGHSQNIDEAAFFGKYGRLLEIAKIGVLNPAIK FT ALINFWDPDYRCFSFGNVDLCPTIEEYGMLMEFPKHLHQVYFPLRNDKVIP FT ELSKLLKIPHLSRFLEKNGSGLKWKFLEVELEKKKEQYALVLERDRLIALG FT IYGLVLFPSLKGVISLEAAAAFVEYENTHVNPTTAILAETLLTLNHFRKTG FT KGAVRCCTQLLYIWMVSHVETKKPIFNNFWWFNQKPLKIVEEEELGILGDQ FT GWMKKLQELPSSNFSWKAPWVKSVDVIVSCGQKCWVPLIGITGYVSYAPAL FT VIRQLGGIQHIPRTVGLAEFSGFFKDQSAREVLETIKQDWSQLTLIQKEES FT LRDPSSSEGYEKWRNLTLIATPKKPCSEDGPSRIEERSLKRKKVSNEEDLM FT EQIERLQIELGKSKGDKAALERMMMEGDKSRVFLNEQLESKDAKIGMLELQ FT LSKGKAVIEESEKERGRLILDLMQSSSELEALKADFDGYQENVEYNQDKFL FT HVKAELLDRIEKHDELNKKYMMIESRLAELQEFERKGNEEEVVKADLAAKK FT IEIRILKVKFDKEREKVKQLTNRLEVSEKHKEQIDTNNNTLNRNNMVLIEK FT MAKVDEQMDEAAIHARIIRANARRVGRDIFRYRQSLAETDAFLEKIENRGL FT AFLPVARDMDEEED" FT CDS join(3020..3760,3764..6319,6558..7703,7707..9575, FT 9579..10004) FT /product="Ogre-PT2_ORF2+3" FT /note="gag-pol." FT /translation="MENEERAHIESHYQTELESVKNEVSRLTDLLEQLLRA FT KNGEGTSARQLEGAPAVHIPQASQNQGANSANEQQFVPITPILPPHTPVTV FT DLTTEGVPDNRSPSLIDQDKLFALEERLRAVEGNDWFDPMRAAEVCLVPNI FT VVPKDFRIPEFIKYTGLECPNTHLRSYCNKMAEVIRDDKMLIYFFQDSLAG FT SALSWYMRLDSIRIKSWRDLVEAFLKQYKFNMEIAPDRTSLMAMEKRSQES FT VRAYAQWRDEAMHVQPPLIETEMVSLFANTFKAPYYEHLMGSSSQHFYDAV FT RIAERIEQGIKAGRIAMPVEKKGFIGRKREGDVNNLEDGYKGKKVDSHNPQ FT VPTSQFSRINFNQSFSPNRTNNQSNYQNHYQRPHTRYPSEQLPPLPMPLKD FT MYAKLLSIGHIAPIPTLPLQPPFPIWYKPELTCEYHAGNPGHGIETCYAFK FT KRLLELIKIGWVSFEDKPNVNSNPLPKHASSSSGIGMIEVGNQCKVLKVSM FT EKMYYLLVRSGFLEANMEGHSEGGSYCEFHGRDGHYIEDCIEFCEKIAKMF FT KMGQLRIEPMENGGEVSMMEGQMEMTGVCRVQQTANGPPRLILVKPSYTKG FT NHNAMPYNYGYASNVQAPLPLFQTEISGLTRSGRCFTSEELRKEKGKEVVD FT LDKALEVNKPVTEEESNEFLKLIKHSEYCIVDQLKKTPARISLMSLILSSE FT PHRNALQKVLNKAYVPQDIEHKTMEHLVGRIHATNYLYFTADELDAEGTGH FT NKPLYITVRCKDCLIGKVLIDNGSALNVLPKHMLEEMPIDESHIKPSTMMA FT RAYDGSPRPIIGTLEVELYVGPQMFLVTLQVMDIHPSYSMLLGRPWIHAAG FT AVASSLHQCLKYIMNGMLVTVKAEETVSMIKNVAVPFIEAGDCKGNNIHAF FT EIVNTDWVPENTVLRRPRISEAARMASLCFLNRGIPFQYNFIIRIPEGVNL FT ARMKSAAQKFGLGYQPNQKDYRWAAGWRRARRMARIKGREPDEEKLEIPPL FT CVSFPKAAYIMQHDKEAESLDQELSNMSINTLGENKVEEDDMKTVARKGDE FT ALPQLTVYTIEEVSAKTFVRKLAQDEKFQNWVTQEAPVVFKMNPESGSPTT FT SHIFSIKNKWPNLNEHVIAMEEEEWDESNISEFTRLVEQQEQTWKPIAEEL FT ETINVGSDQLKKELKIGTLVTSEQRTKMIALLQEYADVFAWSYEDMPGLDT FT NIVVHKIPLEEGCKPVKQKLRRAHPDVWIKVKVELEKQWDAGFLEVVRYPQ FT WVSNIVVVPKKEGKIRVCVDFRNLNKASPKDDFPLPHIDVLVDNAARSSTY FT SFMDGFSGYNQIKMAPEDKTKTTFVTPWGTFCYKVMPFGLKNAGVTYQRAM FT VTLFHDMMHKEIEVYVDDMIAKSKRGEDHVEVLRKLFERLRKYELRLNPAK FT CSFGVKSGKLLGFVVSDRGIEVDPDKVRAIQAMSSPKTEKEVRGFLGRINY FT IARFIAQLTTTCEPIFLLRKKNPGTWNEECEEAFNKIKHYLQNPPLLVPPV FT SGKPLVLYLTVTEAAMGCVLGQHDETGRKERAIYYLSKKFTECESRYTEIE FT RLCCALVWAAKRLRHYMLYYTTWLISKVDPLRYICNKPFLSSRIARWQVLL FT AEYDIVYMTRKAVKGSAIADHLADNAVEDYEPLDFDFPDEDILSIEKEEEN FT TDWWTMFFDGAVNVYGNGAGAVIISPDKKQYPVSVKLHFECTNNTAEYEAC FT ILGLEATLELKIKKLDVYGDSMLIICQVKGEWQTKEEKLRSYQEYLSMLAK FT EFEEIRFTHLGREGNHFADALATLAAMTTIDLKCKVQPVHIDIRNDPAHCC FT LVEGEIDGQPWYYDIKNLVQNQEYPVGASKTDKKTLRRLATDFYLDGEILY FT KRSFDGTLLRCLNEADARKALREVHEGICSTHASGHMIARKIQRAGYFWMT FT LEKDCIDYVRKCHKCQVYSDKVNMPPAPLFNLISPWPFAMWGIDVIGPVNP FT KASNGHRFILVAIDYFTKWVEANSYAHVTQKVVKRFIEKDLICRYGPPEKI FT VTDNAQNFNGKMIVELCTKWKIKHSNSSPYRPKMNGAVEAANKNIKKIIQK FT MVVTYRDWHEMLSFALHAYRTTVRTSTTTPYSLVYGMEAVMPLEVEIPSLR FT VLIDSELEEAEWAKVRYEQLNLISEKRMAAICHHQLYQKRMAKAYDKKVRP FT RLFQEGDLVLKKILSLPGDDQSKWAPNYEGPYIVKKAFSGGALKLARMDGE FT DLARPVNSDSVKRYYA" XX SQ Sequence 12216 BP; 3912 A; 2169 C; 2952 G; 3183 T; 0 other; gaatggcgac tccactgggg accttgtgga ctaagctttg tttttgtctg atttgtgttc 60 gtgtgtttat tgttaatata cctttccttt tgttacctgc ttatacgctt taaatatttt 120 tacacatatt gttcatgcat ttatagaact gtctcataca tcttatagaa ctgtcacatg 180 catcacatac tttgattatt gagagtacac acaaacttta agttaagtgg gggactagca 240 gcttacctta cgactgttag tcaaggttta agtttgtgta aaccccaact cttcgctgag 300 tgcttagact ggtaatagtt ggtacatgtg accatctcat tgcctacaag cccccatatt 360 gcctccacga gggcaatcac tgggacagca agagaccctt tttagagact gaatagccaa 420 cctaccctcg tcaaacacaa aagatttaga accaggctat agggtgtatg cccccacaaa 480 atacattttt gcataacata acctaaacca taaagtattt ggttttcagg tcattttgaa 540 acgataagat ggccatcatt accaaattta ctactgtgga atatgggcag aattctgaat 600 tgtcacaact atagagggag attgttctag atatgatgca aggaagcttc cagtagtcaa 660 agacctgaat tgtgtagtat atgagatgaa gagaatattg ggccatagtc agaatattga 720 tgaggcggca ttttttggga agtatgggcg attattggaa attgcaaaga taggagtatt 780 gaatccagca attaaagctt tgattaactt ttgggatccc gattacagat gcttttcctt 840 tggaaatgtg gatttgtgtc ccactataga ggaatatgga atgttgatgg agtttcccaa 900 acacctgcac caagtttatt ttcctttgag aaatgacaag gtgattcctg agttgtcgaa 960 attattgaag attccacatc tgagcagatt tttggagaag aatggcagcg gtttaaagtg 1020 gaaatttttg gaggttgaac tagaaaagaa aaaggagcaa tacgccttag tgttagaaag 1080 agacaggtta atcgctctgg ggatctatgg tctcgtgtta tttccaagct taaaaggggt 1140 tataagtcta gaagctgctg ctgcattcgt ggaatatgaa aatactcatg tcaaccctac 1200 aactgccata ttagctgaga ccttgctgac cctcaaccat tttagaaaaa cagggaaagg 1260 cgcagtaaga tgttgtactc agttattata catctggatg gtaagccatg ttgaaaccaa 1320 gaagccgatc tttaataatt tttggtggtt taaccaaaaa cccttgaaga tagtagagga 1380 agaagaattg ggaatcctag gtgatcaggg ttggatgaaa aaactccaag agttacctag 1440 tagcaacttt agttggaagg ccccttgggt taaatcagtt gatgtcatag taagttgtgg 1500 acaaaaatgc tgggtacctt taattgggat cacaggttat gtcagctacg ctccggctct 1560 ggtgataaga caattaggtg gcatacaaca catcccaaga actgtgggac ttgctgaatt 1620 ttccggattt ttcaaggatc aatccgcgcg agaagttctt gaaaccatca aacaagattg 1680 gagccagttg actctaattc aaaaggagtg agaaagtttg agagacccta gctcaagtga 1740 aggatatgaa aagtggagga atttgaccct gattgccact ccgaaaaagc catgttctga 1800 agatgggcct tcacgaattg aagaacggtc cttgaaaaga aaaaaagtca gtaatgaaga 1860 agaccttatg gagcaaatag aaaggctaca aatagaattg ggaaagagta agggagataa 1920 agcagcatta gaaaggatga tgatggaagg agataaaagc agagtgtttc taaacgaaca 1980 gctcgaatcc aaagatgcaa aaatagggat gttggagctg caattgagca aaggaaaggc 2040 cgtaatagaa gagtctgaga aagaaagagg aagactgatt ttggatttga tgcaaagcag 2100 ctctgagttg gaagcattga aagccgactt cgatggctat caagagaatg ttgagtacaa 2160 tcaggacaaa ttcttgcatg ttaaagcaga gttgttagac cgaattgaga agcatgatga 2220 gttaaacaag aaatatatga tgatagaaag tcggctggct gaattacaag agttcgaaag 2280 aaagggaaat gaagaagagg ttgtgaaggc agatttggca gctaagaaaa ttgaaattag 2340 aatattgaag gtgaagtttg acaaagaacg agaaaaggtg aaacagttga ccaacaggtt 2400 ggaagtttca gaaaaacata aagaacagat cgacaccaac aacaatacct tgaatcggaa 2460 caacatggtg cttatagaga agatggccaa ggtagatgag caaatggatg aagctgccat 2520 tcacgcacga attattagag ccaatgctcg aagggtggga agggacatct ttcgttatcg 2580 acaaagcttg gctgagacag atgccttttt agagaaaatt gagaatcgag gcctcgcgtt 2640 cctaccagtg gctagagata tggatgaaga ggaagattga tgtatttctc tttttattat 2700 tttgtaccct ctcttcaaga gatgtattag ccaatattaa tgaaaagagg ctttgaccca 2760 tcttttataa atataagcct accaaagcag cagcttgagc acaactactc ctgataagga 2820 acgtgacaaa aagagtccat gcccattaca caagaggaat gttggccatc gatcgttttt 2880 ttttttaaaa aaaacaagtt tctaagagta ttcatgcatt gtttctttat catacattca 2940 tttacatttt tccatgcgtc ccagaccgtg aaacataggt cccacatcca aaatccacaa 3000 cacccggtct cgagcgagaa tggagaacga agaaagagct cacatagagt cacattatca 3060 gaccgagttg gagtctgtaa agaatgaagt ttctcggcta accgacttac ttgagcagct 3120 tctaagggct aagaatgggg agggaacatc agcacgacag cttgaaggag cgccagcagt 3180 tcacattcct caagcatctc aaaaccaggg ggcaaactcg gccaatgaac aacagtttgt 3240 gcctattact cctatcctac cacctcatac tccagtcact gttgacctaa caacggaggg 3300 agtcccggat aataggtctc ccagtttgat agaccaagac aagctatttg ctctggaaga 3360 aagattaagg gcagttgagg gtaatgactg gtttgaccct atgcgagcag ccgaagtatg 3420 tttggtacca aacatcgtgg taccaaaaga ttttcgaata ccagagttca ttaagtatac 3480 cgggttggaa tgcccaaaca ctcaccttcg atcctactgc aacaaaatgg cggaagtaat 3540 ccgtgatgat aaaatgttaa tctatttctt tcaagatagc ctagcaggat ccgctttaag 3600 ctggtacatg aggttagaca gcatcaggat caagagctgg agagacttgg tggaggcttt 3660 cctcaaacag tacaagttta acatggaaat cgctcctgat cgaacaagtc taatggcaat 3720 ggagaaaaga agccaggagt cagtaagggc ttatgcgcaa tgatggaggg atgaggcaat 3780 gcatgtccaa ccccctttga tagaaacgga gatggtgagc ttgtttgcca ataccttcaa 3840 agcaccttat tatgagcacc taatgggtag ctcctctcaa catttctatg atgcggtacg 3900 catagctgag aggatagaac aagggattaa agctgggcga atagcgatgc cagtggaaaa 3960 gaagggtttt attggaagaa agagagaagg cgatgttaac aatttggaag acgggtataa 4020 gggtaagaaa gtagattccc acaatccaca agtacctacc tctcaattct cacgcataaa 4080 ctttaaccaa tctttttccc ctaatcgaac aaataaccaa tcaaactacc aaaatcacta 4140 ccaaagaccc catacgagat acccttcaga acaactacca ccgctaccca tgcctttgaa 4200 ggacatgtac gccaaactgt tgagcattgg gcatatagct cctatcccta cactaccatt 4260 acaaccacca ttcccaattt ggtacaagcc cgagttaact tgtgagtacc atgcgggtaa 4320 tcctgggcat gggattgaaa cctgttacgc tttcaagaaa agattgctgg agcttattaa 4380 gataggatgg gtatcctttg aagacaagcc caatgttaat tcaaacccgt tgcctaaaca 4440 tgcctcaagt agtagtggaa taggcatgat agaagttgga aatcaatgca aggtgttgaa 4500 ggtgtctatg gaaaagatgt actacctgtt agtacgatca ggatttctag aggcaaatat 4560 ggaaggccat tcggagggag gtagctattg tgagttccat ggaagagatg gacattatat 4620 tgaggattgc atcgagtttt gcgaaaagat tgcaaaaatg tttaaaatgg ggcaattgag 4680 aattgaaccc atggagaacg ggggtgaggt gagtatgatg gaaggtcaaa tggagatgac 4740 aggagtatgc agggtccaac aaacagctaa tggtccccca aggctaatct tggttaaacc 4800 atcctacaca aaagggaatc acaatgccat gccttataat tatggttatg cctccaacgt 4860 tcaagctcct cttcctttgt tccagactga gataagtggt ttgaccagga gtggtcgttg 4920 ctttacttcc gaggagttga ggaaggaaaa gggtaaagaa gtggtagatc ttgacaaagc 4980 gctagaagtt aataagccag taacagaaga ggagtcgaat gaattcctga agttgatcaa 5040 gcatagtgaa tattgcatag tagatcaact aaagaagact ccagctagga tctcccttat 5100 gtccctgata ctcagctctg agccgcatcg aaacgccttg cagaaggtat tgaataaggc 5160 atatgtaccc caagacattg aacataaaac catggagcat ctagtgggaa ggatccatgc 5220 aactaattac ctgtacttca cggctgatga gcttgatgct gaaggtaccg gacataacaa 5280 gcccttatac attacggtta gatgtaagga ctgcctcata ggaaaagtac tcattgataa 5340 tggctcggcc cttaacgtgt tgccaaagca catgctagaa gaaatgccga tcgatgaatc 5400 ccatataaag ccaagtacta tgatggccag agcgtatgat ggctcaccta ggccaataat 5460 tgggacttta gaagtggagc tatatgtggg accacaaatg ttcctagtaa cacttcaagt 5520 tatggatatc cacccttcct atagtatgtt gttaggaaga ccttggattc atgcagcggg 5580 ggcagtagct tcgtcattgc accaatgcct gaagtatatc atgaatggga tgttggtaac 5640 tgtcaaggcc gaggagacag tatccatgat aaagaatgta gctgtgcctt ttatcgaagc 5700 gggtgattgc aagggtaaca atatccatgc ctttgagatt gtgaacaccg actgggtgcc 5760 agagaacaca gtgctaagaa ggccaaggat ctcagaagca gcaaggatgg caagtctatg 5820 ctttttgaac cgcgggatcc catttcagta taactttatt atcaggatac cagaaggggt 5880 caatctggca aggatgaaaa gtgctgctca aaaatttggg ttagggtacc aacctaacca 5940 aaaggattat cggtgggctg ctggttggag aagggcaaga aggatggcta gaattaaagg 6000 aagagagcct gatgaagaaa agctagaaat ccctcccctt tgcgtgtcat tcccaaaagc 6060 tgcatacata atgcaacatg ataaagaagc cgaaagcctt gatcaagagc tgtcaaacat 6120 gagcataaat accttggggg aaaacaaggt ggaagaagat gacatgaaga cagtagcaag 6180 aaagggagat gaagcactcc cacaactgac ggtctacacc atagaagagg tctccgccaa 6240 gacctttgtg cgcaagttgg ctcaagacga gaagtttcag aattgggtga cccaagaagc 6300 tccagtggtt ttcaaaatgt aaaccaattt tgtttgtctt aacatgcttt tgtcattgct 6360 ttgtttggtt ttcttttgtc attgctttgt ttggttttca tttatttttg ctagtcgaca 6420 atcaaggctc aattgttggt tagactttat gtttgtcatg gagcccactt tttctttaaa 6480 taaattgtga gatcatgcac tttccacaaa ttgctttctt ttttatgcat ttacaccaaa 6540 cacttcccgc tttcaggaat cctgaaagcg gatctccaac aacatcacat atatttagca 6600 tcaagaataa atggccaaac ttgaacgagc atgtgatagc tatggaagaa gaagaatggg 6660 atgaaagcaa tattagtgaa ttcaccaggc tagtagaaca acaggaacaa acttggaagc 6720 ctatcgccga ggaactcgaa accatcaatg tgggtagtga tcagctcaag aaagagttga 6780 aaataggtac cttagttact tctgaacaaa ggacaaaaat gatcgccctg ttacaagaat 6840 atgcagatgt ctttgcttgg tcttatgaag atatgcccgg tttggacaca aatattgtag 6900 tacacaagat accgttggaa gaaggttgta aaccagtcaa acagaagctg aggagggccc 6960 acccggatgt ctggatcaag gttaaggtag aactcgagaa acaatgggat gctggctttc 7020 tagaagtagt tagatatcca caatgggtat ctaacattgt tgtggtgcct aagaaggagg 7080 ggaagattag agtgtgcgtg gattttcgga atttgaataa agctagcccc aaggatgatt 7140 ttcctctacc acacatagat gttttggtgg acaacgcggc ccggagttcc acatattcct 7200 ttatggatgg tttttcagga tacaaccaga taaaaatggc tccggaagat aagacgaaaa 7260 caacttttgt cacaccgtgg gggacattct gctataaggt catgccattt ggattgaaga 7320 atgcaggagt aacctatcaa agagcaatgg tgactttgtt ccacgacatg atgcacaagg 7380 aaattgaggt gtatgtagac gacatgattg ccaagtctaa aagaggagag gatcatgtcg 7440 aagttttgag gaagttgttt gagagattga ggaagtatga attaaggctc aatcctgcaa 7500 aatgttcatt tggagttaaa tcgggtaagc tgttaggatt tgtggtaagt gatagaggta 7560 tagaggtgga tccagataaa gtaagggcca tccaagctat gtcatcccct aagacggaga 7620 aggaagtaag aggattcttg ggaaggataa actacattgc tcggttcata gctcagttaa 7680 caacgacgtg tgaaccaata ttctgactac taaggaaaaa gaatcctgga acctggaatg 7740 aggagtgtga ggaggcattc aataaaatca agcattattt gcaaaatcca cctttactgg 7800 tccctccggt atcgggaaaa cctctagtat tgtatctaac agtgactgaa gcagctatgg 7860 gatgtgtatt gggtcagcat gatgaaaccg gaaggaagga aagagctatt tattacttaa 7920 gtaagaaatt cactgaatgt gagtctagat acacggagat agaaaggctt tgttgtgcgt 7980 tggtgtgggc agcaaagagg ttgcggcatt atatgttata ctataccact tggttgattt 8040 caaaagtgga tcctctgagg tacatttgta acaagccatt tctctcaagt cgaattgcaa 8100 ggtggcaagt gctattagca gaatatgaca tagtgtacat gacaaggaaa gccgtaaaag 8160 gaagtgcaat cgcggaccat ctggctgata atgctgttga agattacgaa cctttggatt 8220 ttgactttcc tgatgaagat atattgtcaa tagagaaaga agaagagaat acagattggt 8280 ggacgatgtt ttttgacggt gcagtgaacg tatatggtaa cggggccggt gcggtaataa 8340 tctctcctga taagaaacag tatccagttt cggttaaact acatttcgag tgcaccaaca 8400 atacagctga gtatgaagct tgtatccttg gtctagaagc gacattagag ctgaagataa 8460 agaagttaga tgtgtacgga gattcaatgt tgattatctg tcaggttaag ggggaatggc 8520 agaccaaaga ggaaaagttg aggtcgtacc aggaatacct gtccatgcta gcgaaggaat 8580 ttgaagaaat tagattcacc catctgggaa gagaggggaa ccattttgca gatgctttgg 8640 ccacgctagc tgctatgact accattgatc tcaagtgcaa ggtacaaccg gtacacattg 8700 acattagaaa tgacccagct cactgttgct tagttgaagg agagatagac ggacagcctt 8760 ggtattatga tatcaagaac cttgtgcaaa atcaggaata tccggtggga gcctccaaaa 8820 cggataagaa aaccttgaga aggttggcta cagacttcta tttagatgga gagattctgt 8880 acaaaagatc atttgatgga accttgctaa ggtgtttgaa tgaggcagat gctagaaagg 8940 cattacggga ggtccatgag gggatttgct caacccatgc tagcgggcat atgatagcaa 9000 ggaaaatcca aagggctggt tatttttgga tgacactaga gaaagactgt atcgactatg 9060 tcaggaaatg tcataaatgt caagtttaca gtgacaaggt caatatgcca ccagctcctc 9120 tgtttaatct aatatctcct tggccatttg caatgtgggg aattgatgta attggtccgg 9180 ttaacccaaa agctagcaat gggcatagat tcatcctggt ggctattgac tacttcacca 9240 aatgggtgga agctaattcg tatgcccatg taacacagaa ggtagtgaag aggttcatag 9300 aaaaggatct gatttgtcga tatggtcctc cggaaaagat agtgaccgat aatgcacaga 9360 atttcaatgg caaaatgata gtggagttgt gtaccaagtg gaagatcaag cattcaaact 9420 cttcgccata ccgaccaaag atgaatggcg cagtagaagc cgccaacaag aacatcaaga 9480 agattattca gaaaatggta gtcacatata gagattggca tgagatgttg tcattcgctc 9540 ttcacgcata ccgcactaca gttaggacct cgacatgaac cactccatat tctttggtgt 9600 acggtatgga agcagtgatg cctttggaag tagaaatccc gtcgttaaga gtattgatag 9660 actccgaatt agaagaggcc gagtgggcca aagtgagata tgagcaactg aacctgatca 9720 gtgaaaagag gatggccgca atatgtcatc accaactgta ccagaaacgg atggccaagg 9780 catatgataa gaaggttaga ccgcggttgt ttcaagaagg ggatctagta ttgaagaaaa 9840 tattgtcgct acctggagac gatcaaagca aatgggcacc gaattacgaa ggtccttaca 9900 tagtaaagaa ggcattctca ggaggagcac tgaagttggc tagaatggat ggagaagacc 9960 tagctcgacc tgtgaattct gactctgtaa aaagatatta tgcttgatgt aggctcctaa 10020 atcaataaag caaagtttgg ccattgactt ctttctcttt tgcattgatc tcacaacagt 10080 catttttgca ttaatcccaa cagtgcatgt cttgtgttat ctcatttaaa aagtttagca 10140 tcggctgaac gaatttcttc tctctataaa agcctagact agaatcacac ccctacactg 10200 ggggcaataa gagatatttt catgtacgaa agcctataga ttttaaaaac caagctaaaa 10260 catttgacaa aagcatgaca aagaggcaat gacaagtcat acattttgga aaaaggacta 10320 tttgaagaaa gtgagagatt tcttctccaa gaatatgatc ggaggcaaca cgagagatga 10380 atccagcata cgacttcaaa agcaagctca tgttaagagg gaatctcatg aactcgaaga 10440 agatgatggg gcctatgttt caaaaccagg tacgaatgca tgcatggcat ctaatcataa 10500 atcattgcat atatgttttt tttggatcgt cacaggagga gaccttaata cattccaaca 10560 aaattggaga cgaagaaaaa atcattgagt tgattctaga acaacaagaa gagaagataa 10620 taatgttcaa accctgccat caggaagagc gacatcgagc aatcggtaaa agggaatcgc 10680 tagaagggat tccaggttaa cagatttaca agatagattt ttttggtttt tgattaaagg 10740 agatcgccag aaaggatctc attatttcag cttcaaataa aaggaatcgc cagatggaat 10800 tccaagttga tggagatcgc cataagggat ctcatacttc gctatttgga ggtcgccaga 10860 tgggacctcg tattacctgt tgaaaaaagg aatcgccaga tgggattcca agttaattaa 10920 aggagatcgc cagaagggat ctcgtgtttc attatttgga ggtcgccaga tgggaccttg 10980 ttttttcatt gaataaaagg aatcgccaga tgggattcca agttgactaa aggagatcgc 11040 cagaagggat ctcgtgtttc gctatttgga ggtcgccaga tgggacctcg tattacctgt 11100 tggaaaaaaa aagaggaatc accagatggg attccaagtt gattaaagga gatcgccaga 11160 agggatctcg tgtttcatta tttggaggtc gccagatggg acctcgtttt tcatgaataa 11220 aaggaatcgc cagatgggat tccaagttga ttaaaggaga tcgccagaag ggatctcgtg 11280 tttcactatt tggaggtcgc cagatgggac ctcggttttc atgaataaaa ggaatcgccg 11340 gatgggattc caagttgatt taaggagatc gccagaaggg atctcgtgtt tcattatttg 11400 gaggtcgcca gatgggacct cgtttttcat tgaataaaag gaatcgccag atgggattcc 11460 aagttgacta aaggagatcg ccagaaggga tctcgtgttt cgctatttgg aggtcgccag 11520 atgggacctc atattacctg ttgagataaa aggaatcgcc agatgggatt ccaagttgac 11580 taaaggagat cgtcagaagg gatctcgtgt tttgatattt ggaggtcgcc agatgggacc 11640 tcgtttttca tttgaataaa aggaatcgcc agatggggtt ctaagttgac taaaggagat 11700 cgccagaagg gatctcgtat ttcgctattt ggaggtcgcc acatgggacc tcatatttcg 11760 tttgaatagg aatcgccaga tgggattcca ggtcgattaa aggagatcgc cagaagggat 11820 ctcgtatttc gctattggga ggtcgtcaga agggacctca tatttcaaca ttggttacaa 11880 ggaatcgcca gatgggattc taagattttt tgttaaagga gatcgttaga agggatctcg 11940 tatttcaata ttggttaaaa gggaattgcc agacgggatt ccaagttgag taagcaataa 12000 ttatagattt tggtttagag agatcgtcag aagggatctc aagatgataa attttgatca 12060 tagtttttga agttaaggag gattgctgta aaagacaagt ttcaggtcaa tcaagcttca 12120 accagatcag ttttgggagt tccgtttagg gtttatcttt ataaaactta ctgcgcaaaa 12180 cctctgctcc gtaagcatta taaagagggg gcatct 12216 // ID BAMHI_VF repbase; DNA; DCOT; 250 BP. XX AC M16852; XX DT 11-NOV-1996 (Rel. 2.2, Created) DT 25-MAR-1997 (Rel. 3, Last updated, Version 2) XX DE Broad bean (V.faba) BamHI repetitive element, clone 6. XX KW BamHI repetitive sequence; VFBAMHI; BAMHI_VF. XX OS Vicia faba OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Fabeae; Vicia. XX RN [1] RP 1-250 RA Kato A., Iida Y., Yakura K., Tanifuji S.; RT "Sequence analysis of Vicia faba highly repeated DNA: the BamHI RT repeated sequence families."; RL Plant Mol. Biol 5, 41-53 (1985). XX DR GenBank; M16852; Positions 1 250. XX SQ Sequence 250 BP; 79 A; 50 C; 60 G; 61 T; 0 other; gatcccatca agtacatatt tgaaaagccc gctctgtctg ggagaatagc aagatgacgt 60 tggtcttaac agaatatgat atccaatata caactcagaa agcaattaag ggaagtgtac 120 tggctgatca tttggcacac caagcctgtg gacgattatc aatcattgaa ctttgatttt 180 ccggacgaag acatcatggt ggtaactgcc tgctgaagtc ctagaccgga tgaaggaccg 240 aggaaggatc 250 // ID GYVIT1_I repbase; DNA; DCOT; 7441 BP. XX AC AM448663; XX DT 25-APR-2007 (Rel. 12.04, Created) DT 25-APR-2007 (Rel. 12.04, Last updated, Version 1) XX DE Gypsy-type LTR retrotransposon - internal sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; GYVIT1_LTR; GYVIT1_I. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-7441 RA Jurka J.; RT "GYVIT1: Gypsy-type element from Vitis vinifera."; RL Repbase Reports 7(4), 142-142 (2007). XX DR EMBL/GenBank/DDBJ; AM448663; Positions 10973 3533. XX CC LTRs are 96% identical to each other and show no similarity to CC other CC Gypsy LTRs known to date. XX FH Key Location/Qualifiers FT CDS 262..2025 FT /product="GYVIT1_I_1p" FT /translation="MPKWIRDSGGRLVKCDTPQKGEFEVILNIMEAAPEDQ FT HSHQGRQDNLNEFRSMRDRMHPPRMSAPSCIVPPTEQLVIRPYLVPLLPTF FT HGMESENPYAHIKEFEDVCNTFQEGGASIDLMRLKLFPFTLKDKAKIWLNS FT LRPRSIRSWTDLQAEFLKKFFPTHRTNGLKRQISNFSAKENEKFYECWERY FT MEAINACPHHGFDTWLLVSYFYDGMSSSMKQLLETMCGGDFMSKNPEEAMD FT FLSYVADVSRGWDEPTKGEVGKMKSQLNAYNAKAGMYNLKEDDDMKAKLAA FT MTRRLEELELKRMHEVQAVAEAPVQVKLCPNCQSFEHLVEECPAISAEREM FT YRDQANVVGQFRPNNNALYGNTYNSSWRNHPNFSWKARATQYQQPDPPSQQ FT SSSIEQIIANLSKVVGDFVGKQEATNARVDQRMDRVDQRMDRMESMLNKRM FT DGMQNDMNQKFDNIQYSISRLTNLNTLQEKGRFPSQPNQNPKGVHEVESLE FT GESSQVKDVKALITLRSGKKIEQPTPKPHVEKEEEIKKXKEMEDKXSEISE FT EKKESDSTIKAIPEKEXLKEEMLKKSTSPPFPQALHGKKGG" FT CDS 2009..2929 FT /product="GYVIT1_I_2p" FT /translation="MGKRGVRNAAEILEVLRQVKVNIPLLDMIKQVPTYAK FT FLKDLCTIKRGLTVNKKAFLTEQVSAILQCKSPLKYKDPGSPTISVMIGGK FT VVEKALLDLGASVNLLPYSVYKQLGLGELKPTAITLSLADRSVKIPRGVIE FT DVLVQVDNFYYPVDFVVLDTXPTVKEANLVPIILGRPFLATSNAIINCRNG FT LMQLTFGNMTLDLNIFYMSKKQITPEEEEGPEELCIIDTLVEEHCNQHMQD FT KLXESLVDIEEGFSESPIGLATLQSWXKIEGILPLFNEEXEAAVEKEIPKL FT NLNSAFTCGAEIXIX" FT CDS 4832..5854 FT /product="GYVIT1_I_3p" FT /translation="MEHLLAPRDFFYPRVVTDFYQTMTTKEVRNPTLIHFI FT IDGRHGILGARHIAEALQIPFEPTQFDNFKAWTNPTELEMVRTLTRGAANR FT SHLLRGELPPVMFLIDAFLRHNIYPLQHWTQRRGVLLEALYKMSEGFFFGP FT HHLIMAALLYFEEKVHKKKLQRADCIPLLFPRLLCQVLEHLGYPSEPQQER FT KRICREPFTLDKWNNMTAYKIDQPGQPQPAARRASPRHPPXGITLATPAIP FT RASPXAPAPSQPSTSAEPRMAIPISEYRELCRALETLTASQSNLAQELAAI FT KACQEQMLASQAQQAAILRQLQVHFDLPQAVEPSTEDSTRATLSAFRVS" XX SQ Sequence 7441 BP; 2232 A; 1442 C; 1578 G; 2080 T; 109 other; aatggcgccg ttgccgggga atgagtgtca agttcattgt gataccattt ttgagcactt 60 gtgattttca tcacaagttg gtaaagtttc tttcacttta ctaattttca ttctctcttt 120 gtttatttac aatctaagtt tatcttttta aaatttagtc tagtttaatt ttgytgttgt 180 agccctgttt ttcttgttgt cctctgtttt tgttgtcctc trtttttcat tatttaagtt 240 gyagctgaat actagttgtg tatgcccaag tggatacgag acagtggagg aaggcttgtt 300 aagtgtgata cacctcagaa aggagaattt gaagtaatct tgaatatcat ggaggctgca 360 cctgaagatc agcatagtca ccaaggtcgt caagacaatc tcaatgaatt cagatcaatg 420 agggaccgta tgcatccacc tcgtatgagt gcaccatcat gtatagtgcc ccctacagag 480 cagctagtga tcagaccata tcttgttcca cttctaccaa ctttccatgg gatggaaagt 540 gagaatccgt atgcacacat caaggaattt gaagatgttt gtaatacatt ccaagaggga 600 ggagcttcaa ttgacttgat gaggcttaag ttatttcctt ttactttaaa ggataaggcc 660 aaaatttggc ttaattcttt aaggcctagg agtatccgct cttggactga tttacaagct 720 gagttcctca agaaattttt tcctactcat agaacaaatg gcttgaaaag gcaaatttca 780 aacttctcag ctaaagagaa tgagaaattc tatgagtgtt gggaaagata catggaagct 840 ataaatgctt gtcctcacca tggctttgat acttggctac tggtgagtta tttttatgat 900 ggtatgtcct cctcaatgaa gcaactcctc gagacaatgt gtggaggaga tttcatgagc 960 aaaaatccag aggaagctat ggatttcttg agctatgtag ctgatgtttc aaggggatgg 1020 gatgaaccaa ctaaaggaga agtgggaaag atgaagtctc agttgaatgc ttataatgca 1080 aaagctggga tgtataattt gaaagaagat gatgacatga aagcaaagtt ggcagctatg 1140 acaagaagat tggaggagct ggagctgaaa agaatgcatg aagtgcaagc tgttgctgaa 1200 gcaccagtgc aagtgaagct gtgtcccaat tgtcaatcat ttgaacattt ggtggaggag 1260 tgccctgcaa tttcagctga aagggaaatg tatagagatc aagcaaatgt tgttggacaa 1320 ttcaggccca ataacaatgc tctttatgga aatacctaca attcaagttg gaggaatcat 1380 ccaaatttct catggaaggc cagagcaact caataccaac agccggatcc accatctcag 1440 caatcttcaa gtattgaaca aataatagct aatctcagca aggtagtggg agattttgtg 1500 ggaaagcaag aagccaccaa tgctcgagtg gatcaaagaa tggacagagt ggatcaaaga 1560 atggacagaa tggagagtat gttgaacaaa agaatggatg gaatgcaaaa tgatatgaat 1620 caaaaatttg ataacatcca atattcaatc tccaggctta caaatttgaa tacactgcaa 1680 gaaaagggaa gatttccttc tcaacctaac caaaatccca aaggtgtcca tgaagtggaa 1740 agccttgagg gagaatcatc acaggtgaaa gatgtsaarg cyttgatcac tctaaggagt 1800 ggtaagaaaa ttgagcagcc aacacctaag ccacatgttg agaaagaaga agagataaag 1860 aaakggaagg aaatggaaga taaagrsagt gagatcagtg aagaaaagaa ggaatctgat 1920 tcaacaatca aagcaattcc agagaaagag yttytgaagg aagaaatgct gaagaaatca 1980 acttctccac cttttcctca agcattacat gggaaaaagg ggggttagaa atgcagctga 2040 aatcctagaa gtattgaggc aagtgaaagt taatattcca ctgctggata tgatcaaaca 2100 agttccaacg tatgcaaaat tcctaaagga cttgtgtact atcaaaagag ggttgactgt 2160 aaacaagaaa gccttcttga ctgagcaagt aagtgcaatc ttacagtgta agtctccttt 2220 gaagtacaaa gaccctggaa gtcctaccat ttcagtcatg attggaggaa aggtagtgga 2280 gaaagccttg ctagacttgg gagcaagtgt gaatttgctt ccatactctg tctacaagca 2340 actrggactt ggagagttga agccaacagc aatcacttta tctttggcag atagatcagt 2400 gaaaattcca agaggagtaa ttgaggatgt attggttcaa gtagataatt tctactatcc 2460 tgtagatttt gttgttcttg atactratcc aactgtaaag gaagctaatt tagttcctat 2520 catccttgga aggccatttc ttgcwacttc aaatgcaatc atyaaytgta gaaatgggct 2580 tatgcaactc acttttggta ayatgacmct ggatctcaat attttctata tgtctaaaaa 2640 gcaaatcact cctgargaag aagaaggwcc agaagagyta tgtatwattg atactttggt 2700 ggaggagcac tgcaatcagc atatgcaaga caagttgart gaaagtcttg tggatattga 2760 ggaaggtttt tctgaatctc ctattgggct tgctactcta caaagttgga raaagataga 2820 aggaattcta cctytgttca atgaagaaga kgaggcagct gttgaaaaag aaattccaaa 2880 actcaatctg aattctgcct ttacctgtgg agctgaaata yacatayctt gaagaaaata 2940 atcaatgtcc tgtcgtaatm tcttcatctc aaacccaaag tctcaagtga gaggatgcaa 3000 gcttcaaatg ggatccgggc aaactgaatc aggagcaaat tttttgatgg acttagtctt 3060 tttaaagact agctagtcca tatcttttta ttttgttaat ttcttgtttt aattttgata 3120 tcaatgctta tatcaattcc aaagttgcaa aacagaggat gaagaagtgg catgatcaac 3180 tcatctccaa cwaggaattt caggaagggc aaaaagttct gatgtatgac acaagactcc 3240 atatctttcc tgggaagctc aagtcaaggt ggattggtcc atttgttatt caccgagtat 3300 attccaatgg agtggtggac ttattgaatt ccaatggcaa ggacagcttt agagtcaatg 3360 gatatcgtct taagccgttc atggagtcat tcaaatcaga aaaggaggca atyaacctcc 3420 ttgaacctca aaaagcytaa gkgaaawggg tttgctgggc gtggtcttta ccacagtcca 3480 aaatttttgt aaattttgta aattttcaag ttgtttccat acttttgatc ttagtttttg 3540 atyttaaatc atgtttttag gtgtgtttta atcgttttat atgatcccag gtggaagaaa 3600 tttcaagggg attgaaaaga aaaaaaatcg ggycgaaatt ggagcygaaa cagagcaaaa 3660 acaggggaaa aacagagctc tgcgaaattt cgcagggtra agraaacttc tgcgaaatkk 3720 gmwttttgyt gccaamccry tccgcagcac trtagaagcc tctgcgagtg trtttcgcaa 3780 ttgcgaaagt ggwtttggca cacgagtgcc acttcgcagm acagtrrcat caatttcgca 3840 gctgcgaaac kcrttgcgaa rtgrwaaagc stgatttcgc accaaaagtc cywttccgca 3900 grgyatttcg caattgcgaa agtggwtttg gcacacgagt gccacttcgc agcacagtga 3960 catcaatttc gcagctgcga aactcactgc gaagttgctg cgaaaatggc aagttgctgc 4020 gaaattggcg ttttgttgcg gaacttaaac tgacccctgg gcttccgttt ttcctattta 4080 taccggtcaa aaatgctgcg aaaagggttt caaaaatcag agagccattc tcgcagcccc 4140 ttcatcttct tcgccaagcc acgccgtccg wwyctccggt cgtcttctyc gcttagcaac 4200 gccggccaaa gatcgatakc ycmaaaatgg cacgaacgcg aggrgcaaar tcttcatcyc 4260 cttcgaaccg caaaaggagt ctgcgaaagg agccaagtyc aggctctgtt ccagaacctg 4320 ctccamagcc ttcgccgtcg agaccacaac cttctccagt gaagccggcg ccaccaaagc 4380 cgccggcaag gcgatattta acmagrtcag gyggtcagcc attgaagaag aarcccaggg 4440 ttgagagctc tgaaccaatt gatttgactg agcaatcccc tgagmaatcc ccaaatcctt 4500 caccggttca aactccagta tttcgccgta tctgacaccg gttccctcgc caattccctc 4560 acctgaagca actccaatty catcgccggt accatctccg gcaccccaag aaaaagctca 4620 ggagcctcca gcgccaattc cagagcccca aattgcagct gaagcacctc tggaagaagt 4680 gatccgaagg ccattgctcc cccagccccc aatcgaagga aacttggatt gtcgaacacg 4740 ggcattccat tctgaattga gcttcgaytt agcagcattc agagtgaggc cagagcttgc 4800 ccaatccttc cagctgctga ggagatatca tatggagcat ctgctagctc caagggattt 4860 tttctatccc cgggtagtca cggacttcta ccagaccatg acaaccaaag aagtaagaaa 4920 tccaactctg atccatttca taattgatgg aaggcatggt attttgggag caagacacat 4980 tgctgaagct ctgcaaattc cttttgagcc aacccaattc gacaatttta aagcttggac 5040 aaatccaact gagttagaga tggttcgcac actaaccagr ggagctgcaa atcggtcaca 5100 cctgttgagg ggggagctac ctccagtgat gtttttgatt gatgcctttt tgaggcataa 5160 tatctatccc ctgcagcatt ggacccaaag aaggggagtt ctcttggaag ctctatacaa 5220 gatgtctgaa ggattcttct ttgggcctca tcatctgatc atggcagccc ttctatactt 5280 tgaggaaaag gttcacaaga agaagcttca aagagcagat tgcattccac tcctcttccc 5340 amggctgcta tgccaagttt tggagcatct cggatacccc tctgagcctc agcaggaaag 5400 aaagagaata tgccgtgagc catttaccct tgataaatgg aataatatga cggcctacaa 5460 aattgatcag cctgggcagc ctcagccagc agcaaggaga gcctccccaa gacatccacc 5520 traaggtatt acacttgcta ctcctgccat ccctcgagct tcaccarctg cacctgctcc 5580 atcacagcca tccacatcag ctgagccgag gatggccatc cctatatccg aatatcgaga 5640 gctgtgccgt gcattggaga ctcttacagc ttcccagagc aatcttgctc aggagttggc 5700 agccatcaaa gcatgccagg agcagatgtt agcctctcag gctcaacaag ctgccatcct 5760 aaggcagctt caagtccatt tcgatctgcc acaagctgta gagccytcca ctgaagactc 5820 caccagagcc acactctcag ccttcagagt ctcawgctcc agagcccgaa gccycagctg 5880 atccacctac tgrrgaggca gatccttctg cctagcacta tcaccccact tatcagacat 5940 tatatatata tttgcttgtt tatgttttta tgcatgtttg ttttgtttta gttgaaatga 6000 aatcccagta ttttggtact atatatggga ttccttgtgt tacttgtctt tagcattgta 6060 atcaaatgaa ctcaaagtaa tacaagttga atatttcttg ttaaaartta gcattaagtt 6120 ctccttattt ccttttctca catattctat tctttttgaa acatrtggtt ttccccaatc 6180 aatattcgaa tttgatakca gcatggaggt accacttcct ccyttttatt acagtcactc 6240 aaatcacatt gaggacaatg ctcagttcgg ttggggggta tgaggaagga agtattctaa 6300 acctttttgg tattgcaatt atattggtta attagttgta gtttttactt tttactctag 6360 tgttactcta ttctccatga attttgagga aaaattttca aattaaacca agagaaattg 6420 aamtgttgct ttttcacttg acttagagta tggattatgc ttactaaagt rgttcaattg 6480 ttgaaacttc tactgwaatt gaattgagtt cttcyacttt aagctatcca cacactgtgc 6540 acattagttt ccgattataa satgaaaagc tatttccctc ttgacttagt atawttttgr 6600 gacttggtat atttgacctc atttgataaa aattgaaaca ccctgcaaaa ggccaatgag 6660 cctttgaaat aaagaaagtt gtttgcttgc cttgaaaccc gagcaaggtc tgaggggtat 6720 atggtgaaar yctttaaagc ctggtgccct aarccttaat tggttgggag wcaccgacct 6780 caatgctcgt tacaagggtg aataggtaga gttagcatat ggtagatgct tgggtattag 6840 aaaattcatt cttaaaagtc cggggaaaaa tccgaggagt tagtggttga aagatcctta 6900 aaacttggtg ccctaaacct taattggttg ggagtcatcg atggaccccc attacatgga 6960 caagtcagaa agagtacccc ataaagctac cttaaaaaaa aaaataaaaa aaaaaaaaaa 7020 aaaaaaaaga tgaaagtgtg ttcttttctt attgattttg gtcaggttgc taaagtgttg 7080 aaaagagtta ggttgggggg tgagattagt agcatattat tctcggaacc taaggaacca 7140 atacacatag atttttgtgg aagattgaag tttagttctt agaaagtaga aatgatttta 7200 aaacttcagt ttgcataatg cactcccttg attgacagtg tttagcataa gtgttatgac 7260 tcttgttgag atttgggttt gtatttcttt aatgattcat gtgagaaata gatcatcatg 7320 ccacttaaga attattttcc ttttagcatg atgttgtaaa ttktagatta gtttgctatt 7380 tatttttwat tttctctcct atattgctaa gggatctagc aatgatgtcg gttgggggga 7440 g 7441 // ID Ogre-PT3_I repbase; DNA; DCOT; 11092 BP. XX AC AC149300; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE Autonomous LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-PT3; Ogre-PT3_I. XX OS Populus trichocarpa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus. XX RN [1] RP 1-11092 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC149300; Positions 95335 106426. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 6475..6682: putative intron. XX SQ Sequence 11092 BP; 3577 A; 2024 C; 2685 G; 2806 T; 0 other; cagaatggcg actccgctgg ggaccttgtg gactaagctt tgtttttgtc tgaattgttt 60 ttgtttttgt gtgtttttaa tatacctttc cttttgttat ctgcttatat gttttaaata 120 ttttttacac atattgttca tgcatttgta tagaactgtc tcatgcatct tatagaactg 180 tcacatgcat cacatacttt gattttgaga agcacacaca agctttaagt taggtggggg 240 attagcgatt tgccctatga ctatcggtca gggttcagat gcgtgaaaca cccaactcat 300 atctgagtgc ctgcttggta atggtgggta tacttacctt aaccgttcct tgcgacgccc 360 ccatactgtc tttacgaaga acgtcactgg gcagatatga gaccctttta aagaccagat 420 agaaaaccta cccattctca cctaataatt agaacttgtc cttaggatat ctatcttatg 480 ttcatttgca tcatgattaa taatgttaaa ttcatcaatc caggttttga accaaatcat 540 gactaagtac ctatctttcc aagagtttgg gcaagaatct gagttgactc aagtagctga 600 aggaaaatgc ccaagaatcg atgctagtag gttgccttgc attactaaga taaatcacat 660 ggtaaatgac ttggggaagt tagtgtctat tatggaatac attgatgaga ctatttttga 720 aaggcgatat gggagaattg cacaactaat gaggttaccc gtacaagcag cagcaatcaa 780 agccctactg aatttttggg atcctagtta tcggagtttt acctttggga acattgatat 840 gacaccgact ttggaggaat atgaaaggat tctagatttt ccaaacaaca gccacaggat 900 ctatttaagg caaagatttg aagacacagc ttcggaggta gtcagtttat taggcttggg 960 aaagatcagt caatgtagag tcgccgaggg gggtttcaaa tggaaggtca tagaagcccg 1020 aatgaagaaa aatgctgaag aaggcaagtt aggagaggaa cgatacaggt tggtggcctt 1080 cgccattttt gggctagtat tgttcccttc cgaaatcgga gtcatcagtt tggaagcagc 1140 aagtgtcttc atagaatacg agcgtgacca gatcaatcct tcatcagcta ttttgggaga 1200 aaccatgtta tcactcaatc actgcagaat gcatggaaaa ggagccatga gatgttgcac 1260 ccctatgttg tatttatgga ttatcagtca tatcgaaaca ccaagggaca tttttaataa 1320 cttttggtgg tttgacctac gaccgttaaa ggttaccatg gatgagactt ggaagaattg 1380 ggatgagaaa gcatggatag ataaatatgc agcattgcca aggagcaact tcaaatggaa 1440 agcaccatgg atgaacaatg ccatctgcac aatgagctgt ggaaataaga tatgggttcc 1500 cttgattggt ataaccgggt acatcagtta cgcgcccgcc ctagtaacaa gacagttggg 1560 tggaatgcag tacgcgccaa gaactctggg tttagctgat ttcattggtt tattcaagca 1620 ccaacccttc ctcgaagaaa tgaagcttat ccgacaagat tgggaaagac ccctgatggt 1680 aaaaagggaa gaagggagca catttgaaac atcattcagc cagaattatg cagtttggag 1740 gaatgaagag ctttctgaag aaaggggttt ctccatacca aaacatccag aatccgtaat 1800 agagcaacca aaaaggaaaa ggactgatat tgaggaagag ctgagaaagc agctagaaca 1860 atgtagaatt gatctcagca agagcaaagg gcagctgcga ctgttagaaa atcaattaga 1920 ggaagaaaac acgatgaggg tttacttgaa ccagcagttg gaaaaacagg ataaacaatt 1980 gacatcttta aaggaatggc agaaaagggc cgaggtagct gaagaaatag caaaagcggt 2040 ccaggctgag ttaaggaatc gaataactga gtatgatgag ctgtctaaca aaaacgggct 2100 cacacaaaaa gagttggcta aggttaagag atctaccaaa ggcaagatga gtgccgataa 2160 agagatggtg gattccttga aaaaaggaag gagcattctt ttaaagaaag tagaagttga 2220 aaaagagaaa aatcgattag cccatctcga catagaagag gaaagaagga tcagagctca 2280 atatatgatg caactggagg aagagagaag ttcaagaaag gctgcagagt ctgatatgag 2340 agattaccag aaaagagccg agtcttcaaa aggaaggatg atggctttac aatcggagat 2400 cgagatacga gaagaaaagt taaaagagat aagaagccat tacttcgaga tggaagagga 2460 gctcggtaag gctaagcaag agcgtcaaga atgtcaagac tacatgaaca actttacagt 2520 ccaaattaac tccaaaatag ccgaactgga tctcgaaaag gaagaactac agagggtaag 2580 ggataagttg gcccggtcgg aggatatggt tcgagtattg gaaagaagta atgaagccct 2640 aggagccagc aacgaagtga taattgcaga taacactgtg ttccatgata agataaggca 2700 tataacgaag caggtcgagc aagtagcccg ttatgcggaa aggttgcaac gacaagctac 2760 ccaagttgga aatgatgctt caaagtatcg ggaatacatg gcagccatca catgttttat 2820 tggggactta gctaataggg gaaacgcctt ttaaagggta acaatgtata acgccctgtt 2880 ttgtaatcat tgtatgaatg acttctattt ataagaaggc catgacctat ctttctttct 2940 aaaaatgtgt tggtaagcta caatgataag aacttggcaa accctccttt acagtaatcg 3000 ggtcaactca gaaatcttgc ctaaaggatt acgaaagtca tgaatcaact ttaaaatata 3060 catttgcacg agcatcatat tttcatcacg catttgtttt taatttatca tatgcatgcc 3120 agatcgtgaa acataggtcc cacatccaaa gtccacaaca cccggtctag agcgagaatg 3180 gagaacgaag agagagctca tttagagtca cattatcaga ccgagttgga gtccgtaaaa 3240 aatgaagttt ctcggttaac tgacttactt gagcagcttc taagagctaa gaatggggag 3300 ggaacatcag cacaacagcc tgaaggagcg ccagcagctc acatccctca ggtatcccaa 3360 aaccaggggg caaactcggc caatgaacaa cattttgtgc ctatcacccc tatccagcca 3420 actcacgctc caatcactgt ggacttaaca gcggagggag tcccggataa taggtctccc 3480 agtgtgatgg accaagacaa gctatttgct ctggaagaaa ggttaagggc agttgagggt 3540 aatgattggt ttgaccccat acgagcagcc gaagtatgtt tggtaccaaa catcgtggta 3600 ccaaaagatt ttcgaatacc agagttcatt aagtataccg gtttggaatg cccaaacact 3660 caccttcgat cctactgcaa caagatggcg gaagtaatcc gtgatgataa attgctaatc 3720 tatttctttc aagatagcct agcaggatcc gctttaagct ggtacatgag gttagacagc 3780 atcaggatca agagctggag agacttggtg gaggctttcc tcaaacagta caagtttaac 3840 atggaaatcg ctcctgatcg aacaaatcta atggcaatgg agaaaaggag ccaggagtca 3900 gtaagggctt atgcgcaaag atggagggat gaagcaatgc atgtccaacc ccctttgata 3960 gaaacggaga tggtgagctt gtttgccaat accttcaagg caccttatta tgagcaccta 4020 atgggtagtt cctctcaaca tttctatgat gcggtacgca aagccgaaag aatagaacaa 4080 gggattaaag ctgggcgaat agcaatgcca gtggaaaaga agggttttat tggcagaaag 4140 agagagggcg atgttaacaa tctggaaggt gggtataagg gcaagagagt agatttccat 4200 aatcctcaag tacctacctc tcaattctca cgcataaact ttaaccaacc tttttcccct 4260 aatcgaacaa ataaccaatc gaactaccaa aatcactacc aaagacctca tacaaaatac 4320 acttcagaac aactgccacc cttacccatg cctttgaagg acatgtacgc caaacttttg 4380 agcattggac aaatagctcc tatccctaca ctaccactac aaccaccatt cccaatttgg 4440 tacaagcccg agttggcttg cgagtaccat gggggtaatc tcgggcatgg gattgaaacc 4500 tgttacgcct tcaagaagag gttgttagag cttattaaga tgggatgggt atcctttgag 4560 gacaagccca atgttaattc aaacccattg cctaagcatg ccccaaatag tagtggaata 4620 ggcatgatcg aagtgggaaa tcaatgtaag gtgttgaagg tgtccatgaa gaggttgtac 4680 gacatgttgg tacaatcaag atttctaaag acaaaggtga agagccattt ggagggatat 4740 gattactgtg aataccatgg aagagatgga catcatattg aggattgcat cgagttttgc 4800 gaaaagattg caaaaatgct aaaaataggg gagttgagga ttgaacccat aaagagcagc 4860 ggtgaggtga gtatgatgga aggacaagat gaaatgacag gagtatgcag ggtccagcaa 4920 acagcttatg ggcccccaag gctaatcttg gttaaaccgt cctacacaaa agggaatcac 4980 aatgccatgc catataatta tggttatgcc actaacgttc gagctcctct tccttcgttc 5040 cagcctgaga taagtggttt gaccaggagt ggtcgttgct ttacgcccga ggagttgagg 5100 aaggcaaagg gcaaagaagt ggtagatctg gacaaagcac tagaagttaa taagccagta 5160 acggaagatg agtcgaatga attcttgaag ttgatcaagc atagcgaata ttgcatagtg 5220 gatcaactaa agaagactcc agctaggatc tcccttatgt ccttgatact cagctctgag 5280 ccgcatcgaa acgccttgca aaaggtattg aatgaggcat atgtgcccca agacattgaa 5340 cataaaacca tggagcatct agtgggaagg atccatgcaa ctaattacct gtacttcacg 5400 gctgatgagc ttgatgctga aggtaccgga cataacaagc ccttatacat tacggttagg 5460 tgcaaggact gcctcatagg aaaagtactc attgataatg gctcggccct taacgtgttg 5520 ccaaagcaca tgctagaaga aatgccgatc gatgaatccc atattaagcc aagtactatg 5580 atggccagag cgtatgatgg atcgcctagg ccaataattg ggactttaga agtggagcta 5640 tacgtgggac cacaaatgtt cctagtaaca cttcaggtta tggatatcca cccttcctat 5700 agtatgttgt taggaagacc ttggattcat gcagcggggg cagtagcttc gtcattgcac 5760 caatgcttga agtatatcat gaatgggatg ttggtaactg tcaaggccga ggagacaata 5820 tccatgacaa agaatgtagc tgtgcctttt atcgaagcgg gtgattgcaa aggtaacaat 5880 atccatgcct ttgagattgt gaacaccgac tgggtgccag agaacacagt gctaagaagg 5940 cccaggatct cagaagcagc aaggatggca agtctatgct tcttgaacag cgagatccca 6000 tttcagtata accttattat cgggatacca gaaggggtta atctggaaaa gatgaaaagt 6060 gctgctcaaa gatttgggct agggtaccaa cctaaccaag aggattatcg gtgggctgct 6120 ggttggagaa gggcaagaag gatggctaga atcaaaggaa gagagctaga ggaagaaaaa 6180 ctagaaatcc ctccccttag cgtgtcattc ccaaaagctg catacataat gcaacatgat 6240 aaagaggccg aaagccttga tcaagaactg tcaaacatga gcataaatac cttgggggaa 6300 aacaagatgg aaggagatga catgaagaca gtagcaagaa agggagatga agcactccca 6360 caactgacga tctacaccat agaagaagta tccgccaaga cctttgtgcg caagttagct 6420 caagacgaga agtttcagaa ctgggtgacc caagaagctc cagtggtttt caaaatgtaa 6480 accaattttg tttgtcttaa catgcttttg tcattgctta tgtttgcttt tatttcctct 6540 agttgacaat caaggctcat gatgtcagct agattttatg cttttcatga agcccacctt 6600 ttctttaaat aaattgtgag atcatgcact tttcacaaat tgctttcttt ttatgcattt 6660 acaccaaaca cttcccgctt tcaggaatcc tgaaagcgga tctcccacaa catcacatac 6720 atttagcatc aagaataaat ggccaaactt gaacgagcat gtgatagcta tggaagaaga 6780 agagtgggat gaaagcaata tcagtgaatt caccaggcta gtagaacaac aggaacagac 6840 ttggaagcct atcgccgagg aactcgaaac catcaatgtg ggcagtgatc agcttaagaa 6900 agagttgaaa ataggtaccc taattacttc tgaacaaagg ataaaattga tcaccctatt 6960 acaagaatat tcagatgtct ttgcttggtc ctatgaagat atgcctggtt tggatacaaa 7020 tattgtggta cataagatac cgttggaaga aggttgtaag ccagtcaagc agaagctgat 7080 gagggcccac ccggatgttt ggatcaaggt caaggcagaa ctcgagaagc aatgggatgc 7140 tggttttcta gaagtagtta gatatccaca atgggtgtct aacattgttg tggtgcctaa 7200 gaaggagggg aagattagag tgtgcgtgga ttttcggaat ttgaataagg ctagtcccaa 7260 ggatgatttt ccgctaccac acatagatgt tttggtggac aacgctgccc ggagttccac 7320 atattccttt atggatggtt tttcaggata caaccagata aaaatggctc cggaggataa 7380 ggcgaaaaca acttttgtca caccttgggg gacgttctgc tacaaggtca tgccatttgg 7440 attgaagaat gccgaagcaa cctatcaaag agcaatggtg actttgttcc acgacatgat 7500 gcacaaggaa attgaggtgt atgtagacga catgattgcc aagtctaaaa ggggagagga 7560 tcatgttgaa gttttgagga agttgtttga gagattgagg aagtatgaat taaggctcaa 7620 tcctgcaaaa tgttcattcg gagttaaatc gggtaagctg ttaggatttg tggtaagtga 7680 tagaggtata gaggtggatc cagataaagt aagggccatc caagctatgt catcccctaa 7740 gacggagaaa gaagtaagag gattcttggg aaggttaaac tacattgctc ggttcatagc 7800 tcagttaaca acgacgtgtg aacctatatt ccgactacta aggaaaaaga atcctggaac 7860 ctggaatgag gagtgtgagg aggcattcaa taaaatcaag cattatttac aaaatccacc 7920 tttactggtt cctccggtag caggaaaacc tctagtatta tatctaacag taactgaagc 7980 agccatggga tgtgtattgg gtcagcatga tgaaaccgga aggaaggaaa gagctattta 8040 ttacttaagt aagaaattca ctgaatgtga gtctagatac acggaaatag aaaggctttg 8100 ttgtgcgttg atgtgggcgg caaagaggtt gcgacattat atgttatact ataccacttg 8160 gttgatttca aaggtggatc ctctgaggta catttgtaac aagccctttc tctcaagtcg 8220 aattgcaagg tggcaagttc tattagcaga atatgacata gtatacatga caaggaaagc 8280 cgtaaaagga agtgcaatcg cggaccatct ggccgataat gctagaaagg cattacggga 8340 ggtccatgag gggatttgct caacccatgc tagcgggcgt atgatagcaa ggaaaatcca 8400 gagggctggt tatttttgga tgacactaga gaaagactgt atcgactatg tcaagaaatg 8460 tcataaatgt caagtttaca gtgacaaggt caatatgcca ccagctcctc tatttaatct 8520 aatatcccct tggccatttg caatgtgggg aattgacgtg atcgggtctg ttaacccaaa 8580 agctagcaat ggtcatagat tcatcctcgt agctattgac tatttcacaa aatgggtaga 8640 agctagttca tatgcccacg taacacagaa cgtagtgaag aggtttatag agaaggactt 8700 gatttgtcga tatggtcctc ctgaaaagat agtgacagat aatgcacaga atttcaatgg 8760 caaaatgata gcggagctgt gtactaaatg gaaaatcaag cattcgaatt cttcaccata 8820 ccgaccaaag atgaatggcg cagtagaagc cgccaataag aacatcaaga agattattca 8880 gaaaatggta gtcacatata gagattggca tgagatgttg tcattcgcac ttcacgcata 8940 ccgcactgca gtcaggacct cgacagggac taccccatat tctttggtat acggtatgga 9000 ggcagtgatg ccgttggaag tggaaatccc atcgttaaga gtattaatgg attccgaact 9060 agaagaggct gagtgggcca aagtgagata tgagcaactg aacttgatca gcgaaaagag 9120 gatagctgca atatgtcatc accaacttta ccagaaacga atggccaagg catatgataa 9180 gaaggttaga ccgcggttgt ttcaagaagg ggatctagta ttgaagaaaa tattgtcgtt 9240 acctggagac gatcaaagca aatgggcacc gaattacgag ggtccttacg tagtaaagaa 9300 ggcattctca ggaggagcgc tgaagttggc tagaatggat ggagaagacc tagctcgacc 9360 tgtgaattct gactctgtaa aaagatatta tgcttgatgt aggctcctaa atcaataaag 9420 caaagtttgg ccattgactt ctttctcttt tgcattgatc tcacaacaat catttttttt 9480 tttttagggt ttagggttta gggtttaggg tttagggttt agggtttagg gtttaatccc 9540 aacagtgtgt cttgttatcg cacctaaaaa gtttagcatt ggctgaatga atttcttttt 9600 tatacaaaag cccagtttaa aatcacatcc ctacactggg ggcaataaga gatgttttca 9660 tgaaaagttt tacgaaagcc tatagatttg aaaaccaagc taaaagcatt tgacaaaagc 9720 atgacaaaga ggcaatgata agtcatacat tttgggaaaa ggactacttg aagaaagtca 9780 gagacttctt cttcaaggat atgataggag gcaacacgag agatgaatcc aaagcaagct 9840 tatgttaaga gggagtctca tgaactagaa gaagaggatg gggcctatgt ttcaaaacca 9900 ggtacgaatg catgcatggc atctaatcat gaatcattgc acatatgttt ttttggatcg 9960 ttacaggagg agaccttgat gcattccaac aagattggag acgaagaaag aatcatagag 10020 gatgatagca aagaatcacg gttttgaacc atagtgaatt ctggaacaac gagaagaaca 10080 agaaaaagag agaatgaaaa gttttgaacc ctgccatcag gaagaacgac atcaatatca 10140 gctttggtaa taaggaatca ccagatagga ttccaagttg tttgagatcg ccagaaggga 10200 tctcgtattt tgatattggt caaaggaggt cgccagacgg gacctcgtat ttcagctttt 10260 aataaaagga atcgccagat gggattccaa gttgacggag atcgccaaaa ggggtctcgt 10320 atttcgctat gtggaggtcg ccagatggga cctcatattt catgtttgtt aaaaggaatc 10380 gccagatggg attccaagtt gattaaaaga gatcgccaga agggatctcg tgtctcgcta 10440 tttagaggtc gtcagatggg acctcgtatt acctgttgaa caaaaggaat cgccagatgg 10500 gattccaagt tgaataaagg agatcgccag aagggatctc gtgtttcgct atttggaggt 10560 cgccagatgg gacctcgtat tacctgttga ataaaaggaa tcgccaaatg agattccaag 10620 ttgattaaaa gagatcgcca gaagggatct cgggtttcgc tatttagagg tcgccagatg 10680 ggaccttatg tttcatgttt gttaaaagga atcgccagat gggattccaa cttaagggag 10740 atcgccagaa gggatctcgt atttcgctat gtggaggtcg ccagatggga cctcatattt 10800 catttgaata aaaggaatcg ccagatggga ttccaagttg attaaaggag atcgccagaa 10860 gggatctcgt gtttagctat taggaggtcg ccagatggga cctcatattt catgttggtt 10920 gaaaggaatc gccagatggg atttcaagtt gaggaggatt gctgtaaaag acaagtttca 10980 gatcaatcaa gcttcaacca gatcagtttc gggagttccg ttttgggttt atctttataa 11040 aacttactgc gcaaaacctc tgctccgtaa gcattataaa gagggggcat ct 11092 // ID TOTO1_LP_I repbase; DNA; DCOT; 3529 BP. XX AC AF220602; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Lycopersicon pimpinellifolium retrotransposon TOTO1_LP_I, DE internal region. XX KW LTR retrotransposon; internal region; TOTO1_LP_I. XX OS Solanum pimpinellifolium OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-3529 RA Lavelle T.D., Oldroyd E.G., Dalhbeck D., Staskawicz J.B., RA Michelmore W.R.; RT "Direct Submission."; RL Direct Submission to Genbank (04-JAN-2000). XX DR Genbank; AF220602; Positions 37858 41386. XX SQ Sequence 3529 BP; 1169 A; 868 C; 513 G; 979 T; 0 other; aatctccccc ttggcttgaa tttctaacaa aataaatttg tccaccttct tcatttaatc 60 ttcaacaact tgcttctcct ctccataatc tcctttgcaa aatctatgtc tcaacacaga 120 gaacctctct gaaacaattt ctcaaacaaa atcttcaata ctgtcaaaaa ggttgcggct 180 agaactgcat ccgtcaagat gaacacctct ttctaacctg gttcaatcat cgtttatcga 240 accataaaac ctgacttcat cattgaatct ggctctgata ccactttgtt gggaaagaca 300 aggcactaac aaagaacgcc tgacaggata acagcggaag aatacccaag tctatacttt 360 cccttctcga tttgaaccaa gagaagacaa acaaccacaa gcaatataat agtaaggcag 420 caattaattc aatcaaacaa atataacaag agaataataa accaatcaca caagacacca 480 agatttacgt ggaaaaccct tcgatgtgaa gagtaaaaaa ccacgggacc aaaagctcca 540 ctataatcac caagtgtttc aatattgttc tccaaaattg gccacaaaca agtgccaaac 600 aacgagcaac aacaaaataa gattgcacca aatctagaga attaaaggag caaaatcacc 660 aatttcgcag ctattgttta cgacagcaaa actgaagctg caggccacca aatccaactc 720 tgttagttcc taatcaaata ttgagatgaa gataatatgc tgtccaaaaa tcagctcaat 780 cagacaagaa atgaagcgcg aatcgcaatt tgaagttggc tgttagggct gaattttgac 840 tgcgaaaatt gctctctctc tctttttttg gttgttgaaa aactctctgt gtatttgaaa 900 ataagaccta aataggctta tatttgcctc ataagaatgg gcctatgggc aaaaaatggg 960 ttggtccaaa ttgggctttt atttatccac ataagaaggg aaaaagaccc ataacccaac 1020 aattctcccc ctcacgacta tgtggaggag accgccatcc cggcgaccat gcaacaatct 1080 tcaaacttcc ctcttggcaa agctttagtc atcatatcag aaccattatc atttgtatga 1140 atctttccaa gctcaagcaa cttagaatcc aacacatctc gaatccaatg gtatctcaca 1200 tcaatgtgtt tagactgacc atggaacgta gaattcttgc caagatgtat agcactttga 1260 ctgtcacaat aaagcacata cctctcttga gcacaaccaa gttcccccaa gaatctcttc 1320 atccaaagca attctttaca agcttcaacg acagcaataa gctcagcttc tgtagtagat 1380 agagcaacac atttttgcaa cctagattgc caagacacag ctccccctgc aaaagtaacc 1440 aagtaccctg aagtagactt gcgagtatca acatcaccag ccatgtctga atcagtataa 1500 ccacaaagaa taggcttccc tgtaccaaaa cacaaactca gactagaagt gccacagaga 1560 tatctcataa cccacttcac agcattccaa tgttctcttc ccggattaga aagaaaacgg 1620 ctaacaactc caacagcgtg agcaatatcc ggtcttgtac aaaccatcgc atacatcaaa 1680 ctaccaacag ctgaagcata aggaactttc ttcatatctt ccttctcatc atcactagaa 1740 ggacactgtt tcgtgctcaa tttgaagtgc atagctaaag gtgtactgac aaccttagct 1800 ttgtccatgc tgaatctgcg aagtactttc tgaatgtact tctcttgtga taataccaat 1860 ttcttggcct ttctatcacg gacaatctgc atgccaagaa tctgccttgc tggtcctaag 1920 tctttcatag caaaagactt actcaactct tgcttcaact tccgaatcct gcaagtatta 1980 tgaccaacaa caagcatgtc atcaacataa agcaacacaa taataaagtc accatcagag 2040 aatttttgca caaaaacaca atggtctgaa gaagtctttt tgaagccctg ctgactcata 2100 aaagaaccaa acttcctgta ccactgcctg ggagcttgtt tcaaaccata caagctcttc 2160 ttcaatttgc aaacataatt ctctttaccc ttgacttcaa aaccttccgg ttgctccata 2220 taaatttctt catcgaagtc accatggagg aaagcagttt aacatccatt tgctcaacct 2280 ctaaatctag acttgcagcc aagcctagaa ccacacgaat ggatgacatc ttcataactg 2340 gagataatat ctcatcaaaa tcaactcccc ttttctgatt aaatcccttg acaactaatc 2400 tagctttgta ccgtggaact ggattaccat cttcatgttt cacccgaaaa acccacctgt 2460 ttttcaaagc ttttctgtct ttaggtaact taaccaaatc aaaggtatga ttatcatgca 2520 aggatttaat ctcatcttcc atagcatcaa accacctttc tttttcttca ctttccatgg 2580 cctcatcaag actctcaggt tctcccccat cagtcaagag tacatactca ttgggagaat 2640 aacgagatga aggaattctc tctctactag atcgtctgag agaactctct ggagcatcta 2700 taattggttg ttggacaacc acatcatctt gcactggagc atcaacaaca tcatgccggt 2760 cattctgaac atgatcacca tcttcattat caacttgatt ttcatcatta tgaagatttt 2820 cttccggtgc aatagtcaaa ggaactggat caacatcaac taagctctca ctactctgaa 2880 aatcagcctt gtcagctttg tcaaaatctt caattgtttg gtcttcaaaa aacacaacat 2940 cacggcttct aacaagtttc ttctcaacag gatcatagaa acgatagcca aattcatctt 3000 gaccataacc aatgaagata cactgcctag ttttaacatc caactttgac ctttcatcct 3060 taggaacatg tacaaaggct ttacacccat ttcggacagc tggtcaagaa caccctgaaa 3120 atcattaata tgatcacaaa taggagtgcc ctctttatac atgatattca ttaattgttt 3180 caataggaac aacttgttgt tgccactctt cgaaacataa agtgtctcga gcttgtccca 3240 caaacttttg gcatgtgtct cattcacaat atgatttcta acattacctt caacccattg 3300 tctaatatag ccacaaacct gcagatgctc aaattcccat tcttcatcat tcaaagactg 3360 agacttatta gaagcaaaca caggtaaatg catcttcttg acaaatagaa gatctttcat 3420 cttgcctttc caaatatgat agttactacc atttaaacac accattttgc tcatatttgc 3480 ctccatcatt caaaacgaca atcaacaata accaatgctc tgataccac 3529 // ID TGM5_GM repbase; DNA; DCOT; 1002 BP. XX AC X13528; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Soybean Tgm5 transposable element. XX KW transposon; unidentified reading frame; Tgm transposon; KW zinc finger protein; GMTGM5; TGM5_GM. XX OS Glycine max OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; OC Glycine. XX RN [1] RP 1-1002 RA Vodkin O.L.; RT "TGM5_GM."; RL Direct Submission to Genbank (03-DEC-1988)Vodkin L.O., University RL of Illinois, Department of Agronomy, Turner Hall , Urbana, IL RL 61801 U.S.. XX RN [2] RP 1-1002 RA Rhodes R.P., Vodkin O.L.; RT "Organization of the Tgm family of transposable elements in RT soybean."; RL Genetics 120(2), 597-604 (1988). XX DR GenBank; X13528; Positions 1 1002. XX SQ Sequence 1002 BP; 310 A; 182 C; 237 G; 273 T; 0 other; tatggatgga gtgacaaaag ctttacttca ttgcttcaaa tagtgcacga tctgcttcca 60 caggataaca cattgcctaa aagctactat caggcaaaga agatattgtg tccgatgggt 120 atggagtatc agaagattca tgcttgccct aatgattgca tactatacag acatgaattt 180 gaagaaatgt caaaatgccc taggtgtggg gcgtcacggt acaaggtgaa ggatgatgag 240 gactgcagtt ctgatgaaaa ctcaaagaag ggccctccag cgaaagtgtt gtggtatctt 300 cccatcattc caaggtttaa gcgtttattt gctaatgaag acgacgcaaa agatcttacc 360 tggcatgcta atgggagaaa atctgatgga atggtccgtc atccagctga ttgctcccag 420 tggaagaaga ttgatagttt gtatccgaat ttcggcaaag aggcaagaaa tcttagactt 480 ggactagcca gtgatggaat gaatccatat ggcaatttaa gcactcaaca cagttcatgg 540 ccagttctac tagtaattta caattttccg ccttggttgt gcatgaagcg aaaatacatg 600 atgttgtcta tgatgatatc aggcccaaga caaccaggaa atgacattga tgtttatcta 660 agtccgttga ttgaagacct gagaaagttg tgggatgagg gggttttagt gtttgatggg 720 tttcgcaagg agacttttca aatgcgtgca atgctatttt gtaccattaa tgactttcca 780 gcatatggga atctcagcgg ttatagtgtt aagggtcatc ttgcatgccc catctgtgaa 840 gaagacacaa gctacataca actgaaacat ggtagaaaaa cagtgtacac tagacatcgc 900 gtttttctaa aagctcatca cccttacaga agattgaaaa aagcttttaa tggaagtcaa 960 gagcacgaaa ttcgtcggac accgttaact ggtgagcagg tc 1002 // ID RASH3_MT repbase; DNA; DCOT; 1320 BP. XX AC . XX DT 29-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Putative non-autonomous DNA transposon from Medicago truncatula. XX KW DNA transposon; Transposable Element; Nonautonomous; repeat; KW non-autonomous; Interspersed; RASH3_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-1320 RA Shankar R., Jurka J.; RT "RASH3_MT: Putative non-autonomous DNA transposon from Barrel RT Medic."; RL Repbase Reports 6(11), 599-599 (2006). XX DR [1] (Consensus) XX CC Present in moderate copy numbers, the sequence is very well CC conserved. XX SQ Sequence 1320 BP; 416 A; 202 C; 223 G; 478 T; 1 other; gagatcaaaa ttgtcggtga aattttattg gagactaaaa ccaaaagttt gaatatttat 60 agggatccaa aacatagtta acctccatgt cattttatgt cattttatac ttatcagcca 120 cttcaacatc taattttacc aaacacttca attttaataa accatctttt cagctataag 180 ctatcagtta taagacatca actataagct agtttttcag atttcaacta gcttatagct 240 tatttttacc aaacacaccc cacatacgtt cataaatttt gttccattcc aaaacctaga 300 acacacataa cgtgcaattt cttcttcatt cttcttccca tcttgattgt tcaattctct 360 cgttccagaa ttgccgtcgt ttccaattat cgtgagaatc gttgtcgtcc ttttgattcc 420 agacattgtg agaatcggtg ttgtttccat aatcacatca ggtatcgtga cttgtcgact 480 actatcgtga cttgattgca accgtttcac acttataatg cgacagtggt gactttcaac 540 tttggcatga attccaatga tgcttccatt tttatttggg ttttgagttt gattgagttg 600 tttgagatta tataaaattg tattttatca cacatatttt gcgtttgatt aagataaatg 660 gatcttcaat gcgttgatta ttaattttat ttttggtaca atattgatta ttaaatttac 720 ttttggaatt tgttttattc aaatcattat attgtgttgt tatgttgttt ttgttcctgg 780 tgaattttgt gttgccgaaa tgaacatttg ttgagattgt gaacacggtg tgaggtcggt 840 taaagctatg gaagagaaga caaagtgaaa taaataaata ataaataatg ctaatacaaa 900 catgaatttc ataaggtgag cgttaattcg tggatatagc ttttggaaac aatggcgatc 960 tcacgatgtc tggaatcaaa cggacggcaa cgattctcac gataattgga aacggcggca 1020 attctggaac gagagaattg aacaatcaag atgrgaagaa aaatgaagag gaatgaagaa 1080 gaaattgcac gttatgtgtg ttctaggttt tggaatggaa caaaatttat gaacgtatat 1140 gatgggttga atttgatgtg aaattttaat tgttacaagc cctatagtgt aaattaatta 1200 agattgtata cctaaatata attaaataaa aattaaaggg ttaaatatgt ttttggtccc 1260 tataaatata ccaacttttc gttttagtcc ctctaaaatt ctccttcaac ttttagtccc 1320 // ID TN10MRNA_NA repbase; DNA; DCOT; 1332 BP. XX AC AF542545; AF542545.1; GI:29468501; VERSION; XX DT 08-JUL-2003 (Rel. 8.06, Created) DT 08-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Nicotiana attenuata transposon TN10 transposase mRNA, complete DE cds. XX KW TN10; TN10MRNA_NA. XX OS Nicotiana attenuata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; OC Nicotianeae; Nicotiana. XX RN [1] RP 1-1332 RA Hui D., Li H.; RT "Microarray Analysis of Insect-Induced Changes in Transcript RT Accumulation."; RL Unpublished. XX RN [2] RP 1-1332 RA Hui D., Li H.; RT "Direct Submission to GenBank."; RL Direct Submission to Genbank (04-SEP-2002)Department of RL Bioorganics, Max-Planck-Institute for Chemical Ecology, RL Winzerlaer Str. 10, Jena 07745, Germany. XX DR Genbank; AF542545; Positions 1 1332. XX SQ Sequence 1332 BP; 404 A; 316 C; 270 G; 342 T; 0 other; gtactgatga atcccctaat gattttggta aaaatcatta agttaaggtg gatacacatc 60 ttgtcatatg atcaaatggt ttcgcgaaaa atcaataatc agacaacaag atgtgcgaac 120 tcgatatttt acacgactct ctttaccaat tctgccccga attacactta aaacgactca 180 acagcttaac gttggcttgc cacgcattac ttgactgtaa aactctcact cttaccgaac 240 ttggccgtaa cctgccaacc aaagcgagaa caaaacataa catcaaacga atcgaccgat 300 tgttaggtaa tcgtcacctc cacaaagagc gactcgctgt ataccgttgg catgctagct 360 ttatctgttc gggcaatacg atgcccattg tacttgttga ctggtctgat attcgtgagc 420 aaaaacgact tatggtattg cgagcttcag tcgcactaca cggtcgttct gttactcttt 480 atgagaaagc gttcccgctt tcagagcaat gttcaaagaa agctcatgac caatttctag 540 ccgaccttgc gagcattcta ccgagtaaca ccacaccgct cattgtcagt gatgctggct 600 ttaaagtgcc atggtataaa tccgttgaga agctgggttg gtactggtta agtcgagtaa 660 gaggaaaagt acaatatgca gacctaggag cggaaaactg gaaacctatc agcaacttac 720 atgatatgtc atctagtcac tcaaagactt taggctataa gaggctgact aaaagcaatc 780 caatctcatg ccaaattcta ttgtataaat ctcgctctaa aggccgaaaa aatcagcgct 840 cgacacggac tcattgtcac cacccgtcac ctaaaatcta ctcagcgtcg gcaaaggagc 900 catgggttct agcaactaac ttacctgttg aaattcgaac acccaaacaa cttgttaata 960 tctattcgaa gcgaatgcag attgaagaaa ccttccgaga cttgaaaagt cctgcctacg 1020 gactaggcct acgccatagc cgaacgagca gctcagagcg ttttgatatc atgctgctaa 1080 tcgccctgat gcttcaacta acatgttggc ttgcgggcgt tcatgctcag aaacaaggtt 1140 gggacaagca cttccaggct aacacagtca gaaatcgaaa cgtactctca acagttcgct 1200 taggcatgga agttttgcgg cattctggct acacaataac aagggaagac ttactcgtgg 1260 ctgcaaccct actagctcaa aatttattca cacatggtta cgctttgggg aaattatgag 1320 gggatctctc ag 1332 // ID EGLN2_SM repbase; DNA; DCOT; 410 BP. XX AC AB016143; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Solanum melongena LINE retrotransposon EGLN2_SM, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; endonuclease; KW LINE; long interspersed nuclear element; EGLN2_SM. XX OS Solanum melongena OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum. XX RN [1] RP 1-410 RA Noma K., Ohtsubo E., Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016143; Positions 1 410. XX SQ Sequence 410 BP; 163 A; 67 C; 85 G; 95 T; 0 other; ttggaatgtg cgaggtctaa atcaagaggt caagcattaa aaaatgaggt attcataaga 60 agaaataaaa taagatgtat agtaatatat gagcatagag ttagaagtga tagggtaagg 120 aaaactatca ataaaaccat gccaagatgg gattggaacc ccaatgcaga tagcaatacc 180 agaggaagaa tttggataga ttaggatagt acgacagtca agttttaaaa caaagaaaca 240 ttaccacaac acatacatga caaactaaca ctgatccaag agggaaagga attttagttc 300 actgcagttt atggaataca cattattgct acaagaagac ctctatggga taccttacac 360 aacctgaatc tgtgcatatc agagccttgg ctcatccccg gggacttcaa 410 // ID TNA1_NA repbase; DNA; DCOT; 1863 BP. XX AC Z35426; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 04-MAR-1998 (Rel. 3.02, Last updated, Version 1) XX DE Nicotiana alata retrotransposon Tna1-2 integrase motif. XX KW Non-LTR Retrotransposon; Transposable Element; retrotransposon; KW Tna1-2; integrase motif; NATPINTR; TNA1_NA. XX OS Nicotiana alata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; OC Nicotianeae; Nicotiana. XX RN [1] RP 1-1863 RA Royo J., Nass N., Matton P.D., Okamoto S., Clarke E.A., RA Newbigin E.; RT "A retrotransposon-like sequence linked to the S-locus of RT Nicotiana alata is expressed in styles in response to touch."; RL Mol. Gen. Genet 250(2), 180-188 (1996). XX RN [2] RP 1-1863 RA Royo J.; RT "TNA1_NA."; RL Direct Submission to Genbank (22-JUL-1994)JOAQUIN ROYO, PCBRC RL SCHOOL OF BOTANY, UNIVERSITY OF MELBOURNE, PARKVILLE, VICTORIA, RL 3052, AUSTRALIA. XX DR GenBank; Z35426; Positions 1 1863. XX SQ Sequence 1863 BP; 523 A; 365 C; 430 G; 545 T; 0 other; tgttatatta cggcggttcc aaataactgc cacaaaatat aattaaaaat gacgttttac 60 cggccgccgg attaaatttt ttttatagcg gcgattattt cgtattgtgg cggttacaaa 120 acgccacaat attttaacta ttagtataag aattgtaatc gattcaatgt gaattgtact 180 gcatacgtgg gcccatttca ttaaatcagt atatagctat ttgtctatta tacccttgac 240 caacaccatt tacttaattt tccctttagg ggtaaacagg taattaaatt attttctttc 300 aagtatttgg ttgaaagaga ctggcccagc gtaaagttga tcaattttaa aatatattca 360 ttgaataaaa tttagtattc ccccttacgt tttttagtct ccctccagaa tttccccaat 420 ttctttaatt tccctccata aatctcgtat atcccccagt tcctttcccc cgattcattc 480 caggtattca gtgaacccag gctctacaaa tatgtaccgc gatctcaggg aaatctattg 540 atggggtggt atgaagaagg gcgtggcgga cttcgtctct aagtgtccga attgccagca 600 agtgaaggcc gagcatcagc ggcccagtgg gttgactcag cttatagaga taccaacgtg 660 aaagtgggaa atgatcaata tggacttctt gacaggacta cctcacactc aatacaagtt 720 cgactcaatt tgggtaatag tagaccgact caccaaatca gctcactttt tgccagtcaa 780 gtcgaccgat actacagaac aatatgcttg attgtatatc aaggagatag tgaggcttca 840 tggtacgccg ctttccatta tttcggatca aggagcttag ttcacagcta acttctggag 900 gaaatttcag caaggtttgg gtacctatgt gaatctcagt acggctttcc atccgcagac 960 cgatggtcaa gcagagcgga ctattcagac gctcgaggat atgttgcggg catgcgtctt 1020 gaatttcaag ggtaattggg ataatcacct gccccttata gagtttgctt ataacaacat 1080 ctttcatgct agcatccaaa ttgccccatt tgaagcattg tacggaagaa ggtgtaggtc 1140 cccgatcggg tggttcgagg caggtgaagc agaactgata gggccagatc tcgtgcacca 1200 ggccatggag aaggtaagag tcattcagga gaggataaag actgctcaga gtcgccagaa 1260 atcctatgcg gacgtgcgtc gaagagaatt ggaatttcaa ataggtgatt gggtgttctt 1320 gagggtgtct cctatgaagg ggatcatgcg ctttgggaag aagggaaact aagtcctagg 1380 tatgtcgggc cttatcagat tattcaaagg atcggtcaag ttgcgtatag gttggagttg 1440 ccccctgaga tgtccttagt gcacccggtg ttccatgtgt ccatgttgag gaaagtagtt 1500 ggagatccgt ccgccatcgt gccagctgaa gacatcaagg ttactgaaga attatcatat 1560 gaggagattt ttagctatta tagatatgca agtccgtaag ttgcgaaata aggagattgc 1620 ttcagttaaa gtgttgtggc gaaatcaaca agtcgaagag gccacgtggg aagaggaaga 1680 cgagatgaaa agaaaatacc cccatttgtt tgaagaagtc tagaagtgat cgtctgaatt 1740 cttgtcccta agtgatttaa tgtcgtgtcc cgtttgatgt tagaacaccc ccatcctagg 1800 tgctttacta ttgtaattct tccaagttgt gccgaaaatt gatgtgttgt gattatttga 1860 aca 1863 // ID RTIP1_I repbase; DNA; DCOT; 10281 BP. XX AC AB000394; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Ipomoea purpurea retrotransposon RTIP1_I, internal region. XX KW LTR retrotransposon; internal region; RTIP1_I. XX OS Ipomoea purpurea OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea. XX RN [1] RP 1-10281 RA Hisatomi Y., Hanada K., Iida S.; RT "The retrotransposon RTip1 is integrated into a novel type of RT minisatellite MiniSip1, in the genome of the common morning glory RT and carries another new type of minisatellite, MiniSip2."; RL Theor. Appl. Genet 95, 1049-1056 (1997). XX DR GenBank; AB000394; Positions 589 6352. XX SQ Sequence 10281 BP; 2680 A; 2740 C; 3027 G; 1834 T; 0 other; ctggcgccgt ctgtggggat cgaaacaaag agtcgcgtgc cttctgagca aagcgagtcc 60 gagagatcat cgagaagagt cctggtcgcg aggaattgaa agactttacc atgacaggaa 120 gccaagagca attgagccaa cgcaatgggc taggagccga cctaagagat caattgaatc 180 ggagaagcac ccaaagccgg gaaaacgatg caacaccgcc accaacacca caaataaata 240 cacagccgac tgcggtacca ctcaccccgg atcaactaca cgcaatagga cgcgctttcg 300 ccgaggcaag tcggggaata cgggagcaat ccgctactcg gataccgcaa caagaccccc 360 caccgccgcg aaggccggac aatcgacaat caacccgccg ggcggtgagt caacccgtcc 420 agtccgttca ttctcggcta ggccctggtg tcgagcgacg gtcggcgaga aaacggctgg 480 gacgaagaga accctccgcg ctcctgtaga acccacggtc ggcagaccgc acgtgagctt 540 aaccgtgcgg ggaaaggctg gacggttgtt cgccgcgtgg agcagcccgc ccgagaccat 600 aaccaacccg ccgagtcaga ggttggcgaa agcgcggaat cgacaggaaa ccacacccaa 660 gagagggtcg aaatggccaa cctagcccaa gaggtgagaa atctgaaaga acaggtagaa 720 ggaagaacca aggcccccgg acgagcactg ctaaccgcgt tacccttctc cgctgagatc 780 atggccttta agttaccggg cgactttaag ttcccggagc aagccacgtt cgacggatca 840 ggcgacccgc gagaacatct actgagttta ccaagctaag atgcaagtcc taggggtacg 900 ggatccggtc atgtgccgtg ccttcttacc cacgctgaag gggtccgccc aaaggtggct 960 tgtgggacag cccccagggt cgattcacag cttcgaggag ttggcagacc gcttcatgag 1020 ccactatgcc gctaacatca agccacagaa ggatctgaca cacttaggcg acatccatca 1080 ggatgagggc gagtccttaa aagcctatct agctcgctgg taaaaggaga tccagtcgat 1140 agaagaagtg gaggaccaaa cagcgctcac cttcttcatt gaatctttgc ggtccggaca 1200 gctgtatcga gacctaaggg acaaccgccc ggcaacatac gcggaagcta tccagatggc 1260 caacaagagg gccaacacag agcaggctat gaagcataaa cggtagcgcg aggtcggcgg 1320 gtccgcagcg gaaaaaggac gcgggccgag acgagagaaa ggcgctcgga tgtagcccgg 1380 gaccagaggt caggcgaccg tatgaccgcc tcgtcgttca cacctatcga ccggttccag 1440 agcgaccggt ccacgaagta caagcagtcg ccccgcctcc gcctccgccg attgacgacc 1500 gttcagcgat gaggatactg gtaagacttc taaataatgt cgctatcaca aatcttatac 1560 tcacagcacg gaagaatgct tttatctaaa caagatcatg gaggggatca tccagcaagg 1620 gacgccgccc cctaaccaat ggaagcgaag gtcgaccagt cgaggagacg aggggctttc 1680 cgccgacgga gaaaacagcc gaggcaagca gccggcttcc gaggaggacg aagcccaatg 1740 gcgccagaag ccagtcatta acatgatagt cggcgggcca gagggcggcg atttcgcgaa 1800 cacccgaaaa gcctgggctc gacaactata tgtcggaaca gtctatggcc gagaggagag 1860 ctccaaaaag atatgccggg agcccatcgt gttcaccgat aaggacctgc cagccgggga 1920 aacccgcatc gagacgcgtt ggtcatcgcc atggacatca acggtgtggt cgttcgccga 1980 atcctggtcg acaccgggag cagcgtcaac gtactgtacc tagagacctt taccaagatg 2040 gggctgaccc gagaacagct cagaccagtg aacacccctc tcgccggctt caccagggac 2100 tcggtggagg cggaagggtc catcactctc cctgtggaga tcggcagcta tccggacgta 2160 caaaagctga gcatgaagtt tatcgtggtc gatctagctt gctcacacaa cgccatactc 2220 ggccgcccgg gtttggaaga cctcggggcc ctgatctcaa tcgaacatct atgcctgaag 2280 tttcgcacgc cgaacggaat aggaacggtg cgttgtgacc gcaaggtcgc ccgcgactgc 2340 tatctacaag cgtgtagagg aatgggcaag cgtggaatgc aggtccacga gatcaccaag 2400 aggcccccta agaaaacagt gatacctcgc ccagagccgg ccgtcgagct agaggaaatt 2460 gagattgacc cagcacagcc gagcaggcga gtgagaattg gagtcggcct ttcggagaag 2520 ttaaaggggg aaatcatgaa agtgctccaa gagcacaggc tggtttttca cctggggccc 2580 agaagatatg cccggcgtgg atcgatcgat cgtatcgcat cgactcgccg tagacccaga 2640 gcaccggccg gtcgtgcaaa agaaacggta cttggccaac gaccggaggg agtttgtgaa 2700 gaaagaagtt agcacgctgc taacagccgg gcacgtccgt gaggttaagt acccggaatg 2760 gttggctaac gtggtcctcg tgcccaagcc cccgacgtgg cgaatgtgtg tagactacac 2820 tgatcttaac aaagcatgcc caaaagatcc atttcctctg ccccgaatcg accagttagt 2880 cgacgagacg gccgggtcgg cgctgctcag ttttatggac gccttcagag ggtaccatca 2940 aatattcatg cacccggcgg atgaggagaa gaccgccttc ctgactccgg acggagttta 3000 ttgctatcga gtcatgccat tcggactcaa aaatgccggg gctacgtaca cccgaatggt 3060 tgcccggttg tccaccacct gctaggaaaa tcgatggccg catacgtcga cgacatgctc 3120 gtcaagagtc gagaggagga caagcacgcg gaagatttag ccgactgctt taaagtaatg 3180 ataaagtaca acctccgact gaaccccaag aagtgtgcat tcgccgtcca gggtggtaag 3240 ttcttgggct acatggtcac caagcgaggc attgagccta acacagagaa agtacaagtc 3300 atcctcgaca tgcagcctcc tactactatc aaggacctac aacgcttgac cggacgactg 3360 gctgctctca gccgttacct gagcaaatcg gcggataaaa ctgtgccttt cttcgaagcc 3420 atgaagaaga aagagggatt cgctggacta ccgagtgcca acagtcgttc gaggaattaa 3480 aacaatatct gtcgactccc ccagtactgt ctacccccca ggagggcgag cccttactgt 3540 tgtacctcgc cgcctcggcc aaagcggtaa gctcggtgtt ggtttgagag gaggaccgag 3600 ttcagcaccc ggtttactat gtaagccgtt cactgaaagc tgctgagaca cggtacaccg 3660 tcctggaaaa gatcgtgtat gccttggtag tcaccgtgcg caagttggcg ccttacttcc 3720 aagcccatac cgtccgggtc tgacggatca gccactcggg agtgtgctac ggaacccctt 3780 gtcctccggc cggctggtaa agtgggccgt cgagttgact cagtacggga tcgagtacca 3840 acccaggcct tccatcaaag gccaagcttt ggccgacttc ctggtcgagt gtaccgcgag 3900 tgaggaagag aaggaacacg cctcggagag caatccgggc gagtggtggg agatgcatgc 3960 ggatggagca tcgagtcgac agcactgcgg aggcggcgtc atgctcatca ctccggaggg 4020 atttcggctg tattacgccc taagatacct gttctctgca tcaaataacg aggccgaata 4080 cgaagcagta ttgaacggcc tccgactcgc caagaaccta ggagtcgaat ggctacgaat 4140 caaaaccgac tcccgactgg tagtcggaca gatctcgggt acgtgcgaag taaggaacgc 4200 gagaatggcg ttgtacaaag aatgtgccac caagatgttg aaggggtttg aagcttatga 4260 aatagaatac atatcccggg cggacaatgt agaggctgac atcttgtcta aaatcgccct 4320 gaagggggtg ccggaccact taataagaat ttgccagaag gaagaactaa gttggccgag 4380 tatcgaagag gcgccgctag atgtccagca agtaaacatc ggagggtggg atcgagagaa 4440 aaaccctgag atgttctgga tagacgacat ctgacgattc aaggaaacgg gcgagttgcc 4500 aactgaccca gcagtcgccg caagggttcg gcggaaagcc ccttccttcc ggattgtcga 4560 cggacagcta tataaacagt cgttcggagg acccttgctg aaatgcctgc ttaggcctga 4620 ggccgagaag gtaatggatg aagctcatag gggcattttt gctgcgcacc agggtgctca 4680 cacgctcgcc cgaaaattgg tcgttcaagg gtattactgg ccgaccatga tgcgagactg 4740 tattgaaagg atgtccaaat gtggcgtttg tcaggcattc gccaggaaag acactcggcc 4800 ggccaccttc tatacaccgg tcaccactgc cattcccttc gccaaatggg gaatagacct 4860 gttgggacca ttacccgtcg ccccgggagg attgaagttt tgcgtcgtgg ccatcgatta 4920 cttcaccaag tgggtcgagg cggagcccct ggctaccatc accgagtacc agtgtcgacg 4980 ttttctgtgg aaaaaggtga tctgtcgctt cggtttgccc gaacacatcg tcagcgataa 5040 cgggcgacag tttgactgcc agcattcgcc gaattctgcc gccgacacgg tatcaagcat 5100 accaaggtgt cggtggccta cccccaagca aatgggcagg ttgagaatgt gaatcgaacc 5160 ttggtcgatg ggatccagaa gaaactcgag gacattcgag gaaactgggc ggacgagctt 5220 gatcgagtcc tatgggctta tcgcactacc cagcggtgag cgacgggaga gagtccgttc 5280 tcgctcgcat acggctttga ggccaaggtt ccagtcgaag tggtcgaacc cacccaccgg 5340 gttcgcacct actcggacgc agcgaatgaa gagaacctgc aaattgagaa aaaatttcta 5400 gaggaaagaa gggaagtcgc gagtccacga atggttgagt accagcaggc ggtgaaaaga 5460 taccgcgacc gtagaactcg cccgcgaacc ttccaggttg gcgacctagt gctacgagat 5520 cgacaagcca gccagcctac tgaaggaggc aagctcgcgg tcaagtggga agggccgtac 5580 cgcatcacgg ctgtagtcca ggccggaact tacaaattag agattatgga aggcaagctt 5640 atagatcgta tatggaatgc tactcatttg aaaaggttct atcagtagcc aatgataggt 5700 catgtatgag ctcgaggatt ccaagaaatc tgaataaagt gcatgggtta cagccaatcg 5760 tcccaggaac tcggcgagga aaaagtgagg ttcaaagcct tagaagaatg ccaatattaa 5820 aagaactcaa agacaaattc cgtgaaaaga gaaggaaaaa ctgtttttta ttaaaataag 5880 gccgataagg aggccagccc ttacaaaagg agggtctatt ctaaaagacc ctaggctact 5940 ggggaggggg tgtcgatggc gaccccttca acttgcgccc ccgccgatgg tccagcaagg 6000 ggaacagagg aagggtcctc cgcctgagga gaagactcgg cgagctctgg agcgtcgccg 6060 caggaagagt cgccgggtca gtaggcgcag ccggcccatc agcgtccagc accggcttga 6120 gaccccagct ctcgggaatg aacgaggagt cgcgagccaa caaggtggcg tgaatctcca 6180 tctgcgcctc gcggaaaccg aggcggtaat cccgctcgcc caggtctaag aggaaatcat 6240 cgccttggga tcggcagcca ctccttggcc acctctctcc tccgagctgc caccgctgcc 6300 tgcacatccg cctcgaaggc cgccgacttc gtgtaatctt cgacagaagt cgcggcgatc 6360 gtggccgctc tatccctctc ctcctcccac tgacgggtga ccctcagcaa ctcggcattg 6420 tgcacctcca ccatcttgag ttcttcgcct gctcttccag gaaagcttcc tctgtctggc 6480 gcacttcgcg accatggccc gcatatcatt cctaaagccc tggaaccgat tgcccagttc 6540 catctggagg gtgaggtcct gcacaccaaa ccgtcagtcg aacggaaaag agaaaagtaa 6600 acagagggaa aggtcgaatg aataacactt acgcgatacg actgccggag caaggcctcg 6660 atgatgaacc cgtcgccgag agcatgggtc gactccacat cttttggcag gaggacatcc 6720 ttgcacactt gcgaatggag gtgttgccca tccagatttg ggcgtcctca tccacctcgt 6780 ggcacagcct gatcctcttc ggagtcggcc cctccgtatg ctcagcagac cgcttagaac 6840 tcggactctc agtagaagga ggaggcggct gccgactggg cgataccacg ggcgagggtg 6900 tgaggtcgac cacgttgtga gaaggtggag gagtcggccg aaccaccgac gacggctgag 6960 aagaggacgc ggcggcagca ccggtggagc gttgcgtcaa gcgacgcctc atctttttcg 7020 ctctatctgc catctcagga gtcggtgcga ttgcctcgtc ggagctggag gagtcggaat 7080 cgtacgggcc tgtaaaagaa acccactcac ttgtgagtgt tcccgcatga agtaagaagc 7140 aagtcgagaa agagatgaaa aagacgctac ctatggtggc ggcgcctccg gcagaaggcc 7200 atgcttggcc atgggccgga cccggaccag tacttgaccg agtatggccc caggcccttc 7260 aagaagtcgc cgcccttgac agcatcctcc gtaaagacgg cgctccgaga gcaaggcttg 7320 aagagagtcg ccggccatag ggtcggaaag gtgaaggaag aagagcgagg tcggacgaag 7380 aaataaaggg gcttccactc ttttatcgtg tcggacaacc cctcgaaaag ttgccgcccc 7440 ggacgggcag cgacttggat gaagccgggc gagtgagagc cgaccttgtt cacggtgaag 7500 aggtaccgga acaggtccaa atctggctcg cactgccacc aatggcagag aattgatgaa 7560 gctggtgagg agtcggtgag agttaggcac taactggccc gggaccaagt tatagtgccg 7620 aaagagaagc gaaagaaatg ggtgtggggg cactcggaag ccgaatgcaa ccgactgcag 7680 gtggataccc acaaaaccct ccggcgggtc gtggatatgc cggctctccg ccgcgacgac 7740 cagggctgaa gggccaagca gaaagcgggc catgtccagg tccgccgctg ttgcagacga 7800 cggaagaccg gacggcggac aaccgagtca aacttgcctc gcggccgttc aacaccgtcc 7860 ggcaaagcgc caccgtggtc aacggggctg ggctcatcgg ggtggccgcc cagaagaaga 7920 aggggttaag aatgaagaag agagacaccg cctggaagcc cgccggcatt tccaggcggc 7980 ggacgacgga agaagaagga gaggacgtcg gttgtcaaaa gacggccgac gggtggaaga 8040 agaatgagaa gaggaaggca ttacttacag attggagttg aggctgagaa gacgatgaag 8100 gagcagaagc ttggtgggag aattgaagaa gaagaatgga aggaaggggc tttttaaaga 8160 gagaaagaag tccaagaggc tgccacgcgg cgcctcctca gtggaggaat cggaggcgac 8220 aagacgtcga agggacgccg catttaatac ctcgataggc ggggcgacgg ttcaggccta 8280 gggctagcct gcaagcggcg cgtctaccct aggccgagcc tgagttacgg tgacccggcc 8340 tgctaggcaa aggccatcaa ggcgaaagct atgggggccc atcaagatca tgctggaagt 8400 ttctagaagt gacccagctg ggtccggcca aattgggatg ccggacgagc ttcaggtcgc 8460 aaggtcggcc gacggatttg tcgagtcctt catccacaag gattagtcgg gcagagtcta 8520 caagccggtc atgacgacca agagtcggcc aaaggaacac gcaaaaccaa gaaccaaaaa 8580 gtaaaaacgt gattttattc cataaagaca ggggtacaag gccgaggact cggccacaag 8640 cattacaaag aaaagacggg cctagggctt agcttcctcc tcctccgcgt gacgcatcgg 8700 ctgcggaccc tccaggtagt agtgggggcg gaaaggcagg ggactcggct caggctcggg 8760 ctcgggcagt tcgtccagat acacggcagg cttcccatca acaaccatcc gcaggggtct 8820 ctccagagca ctcggcgaca tggccacgcc aaaaagcgga ggagcctccc agtctaggtc 8880 ctcctccggc tccgggtcct ctaccatggg ctccatctcg tcctcctccg gctccacgat 8940 catcaggtca agcatgtcag gaggcaccac gatgggatca gaagtggagt cgcccaccaa 9000 gtgccctccg ttagccgctc tcttccgcca gagctcctcc agccgggcat gctccttatt 9060 gcggatggac caacgacgat caccgtccct gaaactcata gcttgaggtt ttgaaatgtg 9120 aaatggtgag aaaacacaga gctaccaaga gcccttatat agagcctcga gagggcaacg 9180 accgagcgca aatcacggag ggaatcgtaa ctgacataac tgagccagat tggatgggca 9240 gcgcgaatct ctgtcagaga ttaatcccat ccaattagct cggaagggtg agattcgcac 9300 gctaaactga aaaagcctag ctcgccctgg gaagcgagat tttacaggtg tcaagcggag 9360 ggaggactcg acattgcggc caactcctca accattcaga cgggcgaatg cgctgaatat 9420 accaaaaaaa aagatgaaaa cagaaggccg agaatatttt attataagat aagaaggtgc 9480 aggttacaag gagcttatta cagagtaagc aagtgctcct aaaagaacta cccctctaga 9540 gtatccagcc gaccccagtc cacaagatca ctcacccggc gaagaggagt cgcttccaaa 9600 gaaccctccc gatggtccag gaggggaggg gcaaagcgag tcccagaacg ccggcatgag 9660 tggtggcaca accagttctt cgtcgtccgg gtacatttcc tgatagcgag caaagtcttc 9720 ctcgttcatt agccccgtaa ccggaccgtc caagtcatcc agaggaatag aaaaggtcat 9780 acggaaggtc agttgctctg ggacaggcac gtcaacaacg gtaccgccta gggaagttac 9840 tcgagcagtc ccggaggggg agaagggcga gaagtcggag cgacttcacg acgagcagga 9900 gtcggcggat gaagagccat ggaggcagcg ccaacaggtg atctctgtgg agtcggacgg 9960 ggagccttct ttttgggctc cctctcaggc cgagtccgtt tcgaatgcaa ggggcgccag 10020 ggcgacccaa agtcaatccg cttccctttc aatggtgagc gacccatgag gaattagtaa 10080 gttaagagaa gaacggccaa ggtcatttat aggtgccagg ccagggcgag gagatcagaa 10140 cggtcccgcg agatccggga gatagcgaat aatctggacc aatcctgagt cattcatggt 10200 agggattcgg tgagcaggag acggttacta cttttccaaa cccaggttgg tggaccgggt 10260 atggaaaagt gagggactag t 10281 // ID SHALINE14_MT repbase; DNA; DCOT; 4346 BP. XX AC . XX DT 23-JAN-2007 (Rel. 12.01, Created) DT 23-JAN-2007 (Rel. 12.01, Last updated, Version 1) XX DE A long interspersed element from Medicago truncatula. XX KW L1; Non-LTR Retrotransposon; Transposable Element; retroposon; KW repeat; ORF; Interspersed; Poly-A; SHALINE14_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-4346 RA Shankar R., Jurka J.; RT "SHALINE14_MT: A LINE element from barrel medic."; RL Repbase Reports 7(1), 91-91 (2007). XX DR [1] (Consensus) XX CC The sequence has 5' truncated end. It exists in Medicago genome CC in multiple copies. It has intact domains for CC endo/exo-phosphatase, reverse transcriptase and RNAse A. The 3' CC end is very well conserved across the copies. XX FH Key Location/Qualifiers FT CDS join(4..186,190..4110,4114..4170) FT /product="SHALINE14_MT_1p" FT /translation="MNILFWNVRGIGNSDTRTALKNLCLSHKPSLIFVAEP FT MVNFAQIPDWYWHSIGVSKYCINNGPFLPNLWALWGNELIATVIFVSDQCI FT ALEISCYQSSVYIAAIYASTYYVKRRQLWANLTHFQGCFQGPWFFMGDFNA FT VLGAHEKRGRRPPPPLSCEDFLNWTNANILNHLPTLGTFYTWTNGRFGNEN FT VALRLDRAVCNEEWINFWRSSTCSALVRHQSDHHPLLLSLIYSTVKHASPF FT KFFKAWISHDDCRQLVSDTWSKDVRGQGMARLQSKLNNVKNAFKIWNRTIF FT GDVDRQVKLAMDEVNRIQHLIDSEGFSDNLYLQDLEAQLSLTKALNVQDEL FT WKEKARHHQFINGDRNTAYFHRVSKIRATTKSISFLQDGDNVITDPTAIEM FT HILSYFQDIFSVDNNCAQNTLVDETIPSLVSEEDNNMLXRIPXYDEIKEAV FT FALNADGAPGPDGFGGHFYQTFWDIVGLDVVHSVHEFFLHGELPPNINSNM FT IVLIPKIPGAKAMGDYRPIALANFQFKIVTKILADRLASITSRIISVEQRG FT FVRDRNISECVIIASEAINSLDKRQYGGNIALKVDISKAFDTLDWNFLIMV FT LXHFGFSPIFINWILAILQSARLSILVNGKAVGFFSCSRGVRQGDPLSPLL FT FCLAEEVLSRAXSTSAARGRIVPMSYCRGISLPTHILYADDVLIFCTGLKS FT NIRWLLRIFHNYSEVSGQLINNAKSRFFTGAMTGSRTNMIANLLGFSVGSV FT PFQYLGCPIFQGKPKVIHFQMIADRIKMKLATWKGXILSIMGRVQLVKSII FT HGMLVYSFHVYLWPRRLLRLLDTWIKNFIWSGDVLTRKVCTVSWKVLCRPW FT DEGGLDLKPTRLINXALILKLSWNLIAQDSQWSHLFKSRYFSNGQPSMRYF FT KSSVWSGVKLHIGTVMNNSLWIVGNGDNINFWTDNWLGEPLVDLLNIDADF FT HAHIKGMLSEVIVNGTWXIPAAIADFGDIKERLDVVILPRTHLPDVLVWKH FT ASDGVFTSKLAHSFMRPPSHVWPWAASIWXACIPPSHSFIFWRLSHGKMPT FT DENLQTRGCIVVSVCSFCLKPAETSDHLFLHCNFAFRLWTWLGVKLNCVID FT SSSVDSLLDCRPVSCSSQVSDIFVAAVXHTIHTIWWARNAVRFSXXTPTIH FT AAKIRIHSFIAMSGNVSKGKCLLSYFAFLDSFAVSPHCRSVKDIILVFWKP FT PSSPWVKVNTDGSVIGGNAACGGLFRDXLGTFCGAFSCNIGIQTVFEAEVF FT GFILAMEYAAHKGWRHIWLESDSTSALLIFSNPSLVPILLRNRWHNAQVLG FT VQVISSHIFREGNSCADKLASLGHEITDAVWLDTLPARVCLDFFRDRCGLP FT NYRFPFVFGGLCFSLFSLFCFXFC" XX SQ Sequence 4346 BP; 978 A; 754 C; 933 G; 1652 T; 29 other; tcaatgaata ttctcttctg gaatgttcga ggtattggta attctgacac tcgaactgct 60 ttaaaaaatt tatgtttatc ccacaaaccc tctctaattt ttgtggcgga accaatggtt 120 aattttgctc aaattcctga ttggtattgg cattccatag gcgtatctaa atattgcatt 180 aataattgag gtccttttct tccgaattta tgggctcttt ggggaaatga attaattgca 240 actgtgattt ttgtgtctga tcaatgcatt gctttggaga tttcttgtta tcagtcttct 300 gtttatattg ctgccattta tgctagtaca tactatgtga agcgtcgaca gctttgggct 360 aatctcactc attttcaagg atgttttcaa ggtccatggt tttttatggg cgatttcaat 420 gctgttttag gtgctcatga gaaaaggggc aggcgccctc ctcctccttt atcatgtgaa 480 gattttttaa attggacaaa tgctaatatt cttaatcact tgcctactct gggtactttt 540 tacacttgga ctaatggtag gtttggcaat gaaaatgttg ctcttcgtct tgacagggcg 600 gtttgtaatg aagaatggat caatttttgg cgtagttcta cttgttcagc tttagtccgt 660 catcaatctg atcatcatcc tttattgctt tctcttattt attcgacggt gaagcatgca 720 tctccattta aatttttcaa agcatggatc tctcatgacg attgtaggca gctggtgtct 780 gacacttggt cgaaggatgt tcgcggacaa ggaatggctc ggttacagtc taaattaaat 840 aatgtcaaaa atgctttcaa gatttggaat cgcacaattt ttggtgatgt ggataggcaa 900 gtgaagcttg ctatggatga agtgaatcgc attcaacact taattgattc tgaaggtttt 960 tctgacaatc tttatttgca ggatttagag gctcaactgt ctttgacaaa agctttaaat 1020 gttcaggatg aattatggaa agaaaaagcg agacaccatc agtttattaa tggtgaccgc 1080 aacactgcct attttcatag rgtctccaaa atccgagcaa cgacaaaatc tatttctttt 1140 ttacaggatg gtgataatgt tataactgat cccactgcta tagagatgca tattctttct 1200 tattttcagg atatttttag cgtggataat aattgtgctc agaatacttt ggtggatgaa 1260 actattcctt cgctggtgtc ggaagaggat aataatatgt tgatkcgtat tcctttktat 1320 gatgaaatta aggaggcggt ttttgctctt aatgctgatg gtgcaccggg tccggatggg 1380 tttggaggac atttytatca aactttttgg gacattgttg gtcttgatgt ggttcattct 1440 gttcatgaat ttttccttca tggtgagctg cctcctaata ttaattctaa tatgattgtg 1500 ttgattccaa aaattccagg tgctaaggct atgggtgatt accgacctat tgcactggca 1560 aactttcagt ttaaaattgt tactaaaatt ctggcagata ggcttgctag catcacttct 1620 cgaattattt ctgttgagca acggggtttt gttcgtgacc gtaacatttc tgagtgtgtt 1680 attattgctt ctgaggcgat caattcgcta gacaaacgac agtatggtgg gaatatagct 1740 ctaaaggttg acatttccaa ggcttttgac actttagatt ggaatttttt gattatggtg 1800 ctgcancatt ttggtttctc ccctattttt atyaattgga ttcttgctat tttacaatct 1860 gctcgtctat ctattttggt taatggcaag gcngttggtt ttttttcttg ctcccgtggt 1920 gtgcgtcaag gggaccctct ttctccactt ttattttgtc tagcagagga ggttcttagt 1980 cgagctntat caacttcagc agcaagggga cgaattgttc ctatgtctta ttgtcgtggt 2040 atttckttgc cgactcatat tttatatgcg gatgatgtct tgattttttg tacaggtttg 2100 aagagtaata ttcggtggct tcttcgtatt tttcataatt attcwgaagt ttcaggtcag 2160 cttataaata atgcaaagag tcgtttcttc actggtgcta tgactggttc tcggacaaat 2220 atgattgcta atttgttagg tttttctgtg ggatcagtgc cttttcaata tcttggctgc 2280 cccatctttc aaggaaagcc aaaggtaatt cattttcaaa tgattgctga cagaattaaa 2340 atgaagctag ccacttggaa aggtrgtatt ctatctatta tgggtagggt gcaacttgtt 2400 aaatctataa tccatggtat gcttgtttac tcttttcatg tttatctttg gcctagaagg 2460 ttgctccgtc ttcttgatac atggattaaa aattttattt ggagtggtga tgttcttacg 2520 agaaaagttt gcacggtttc ttggaaagtr ctgtgtcgtc cgtgggatga aggtgggctt 2580 gatctcaagc ctacgcgctt gattaatgam gctttgattc tgaaattatc ttggaatctt 2640 attgcacaag actctcaatg gtctcatctt ttcaagagcc gttatttctc taatggtcag 2700 ccctccatgc gctattttaa atcttctgtt tggtcgggtg ttaaacttca tattggcacg 2760 gttatgaaca attcattgtg gatagtgggt aatggtgata atattaattt ttggactgat 2820 aattggctag gtgaaccttt ggtagatttg ttgaatattg atgctgattt tcatgctcat 2880 attaaaggta tgctgtcgga agttattgtt aatggtacct ggaakatacc tgcagctatt 2940 gctgattttg gwgacattaa agagcgccta gatgttgtca tcytacctcg tactcatctc 3000 ccggatgtgc tggtttggaa gcatgcttct gatggagtct tyacttccaa gcttgctcat 3060 tcttttatgc gkcctccttc acatgtttgg ccttgggcag cctctatttg gagmgcttgc 3120 atccctcctt ctcattcttt tattttttgg aggctttctc acggtaagat gcccacagat 3180 gaaaatcttc aaactcgtgg ctgcattgtg gtatctgttt gtagtttttg cttgaagcct 3240 gctgaaactt ctgatcattt atttcttcat tgtaactttg cgtttcggct ttggacttgg 3300 cttggggtga agctcaattg tgttattgac tcttcctctg tagactctct tcttgattgt 3360 cggccagtta gytgctcctc ccaagtgtcg gatatctttg ttgctgcagt tttkcatacg 3420 attcatacta tttggtgggc taggaatgca gttcgattct cagwttygac tcctactatt 3480 catgcagcaa aaatacgtat tcattctttt attgctatgt ckggtaatgt ttckaaaggt 3540 aagtgcttac tgtcatactt cgcttttctt gattcttttg cagtttctcc tcattgccgt 3600 agtgtcaagg acattatttt ggtgttttgg aagcctcctt cctctccttg ggtgaaggtc 3660 aatacggatg gttcsgttat tggtggtaat gcggcttgtg gkggactgtt tcgtgattwt 3720 ctaggtacct tctgcggtgc tttttcttgt aatattggta tacagactgt ttttgaagca 3780 gaggtttttg gttttattct tgctatggag tatgctgctc ataaaggatg gcgacacatt 3840 tggctggaga gtgactccac tagtgctctt cttatttttt caaatccttc tttagttcct 3900 attcttcttc ggaaccgttg gcataatgct caggttcttg gtgttcaggt tatctcttct 3960 catattttcc gtgaaggtaa cagttgtgcg gataagctag cttctttggg tcatgaaata 4020 actgatgctg tttggttgga cactcttcca gctagagttt gtcttgattt ctttagagat 4080 agatgtggtc tgcctaatta cagatttcct tagtttgttt ttggtggact ttgtttctct 4140 ttattttctt tgttttgttt tttsttttgt tgagggtttt ggcctagtcc cccctctttt 4200 gtaattattt tttccccttt tttaataaat tttttcgagt gtggtggcat aggatggagg 4260 tgtctcgggg tgccaaccta gttgggatgt cgatgatgcc ccttgatgtc tttcctctct 4320 ccttgcttat caaaaaaaaa aaaaaa 4346 // ID EGLN3_SM repbase; DNA; DCOT; 410 BP. XX AC AB016144; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Solanum melongena LINE retrotransposon EGLN3_SM, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; endonuclease; KW LINE; long interspersed nuclear element; EGLN3_SM. XX OS Solanum melongena OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum. XX RN [1] RP 1-410 RA Noma K., Ohtsubo E., Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016144; Positions 1 410. XX SQ Sequence 410 BP; 145 A; 43 C; 99 G; 123 T; 0 other; ttggaatgtg cgaggtctaa attgccttag taagcagagg gaagttgcat tcttctgtaa 60 caaatgagaa ctaaatttag taggactggt gaagacaaaa ataaaataca aaagtgtaga 120 tcgggttgtt taatccatgt ttgctggttg gaattattac tataaccata actctcatta 180 taatgggagg atattggtgg tatggaggga acatataaat gagataaggt ggaaagtgaa 240 ttacatcaag caataacatg tttattgaaa aacaagttgt tgatgaaaga attttactat 300 acttatgttt atgctcagaa tgggagggaa gaaaggaaag aactattgaa gtatttgaat 360 cagtggagtg ttggtatgta gaaaccatgg ctcttccccg gagattttaa 410 // ID RAM9B_LTR repbase; DNA; DCOT; 2753 BP. XX AC . XX DT 22-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Long terminal region of RAM9B retroposon from Medicago DE truncatula. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; LTR; KW Interspersed repeat; retroposon; RAM9B_LTR. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-2753 RA Shankar R., Jurka J.; RT "RAM9B: A LTR retroposon from Barrel Medic."; RL Repbase Reports 6(11), 595-595 (2006). XX DR [1] (Consensus) XX SQ Sequence 2753 BP; 768 A; 405 C; 641 G; 936 T; 3 other; tgtaacgccc actttcgttt aatcgtttat ttaatcgagt ttaggcgatt atattataat 60 tatataatat atgcatgatt ttggtatgtt ttgatgattt attttcgtga taagttatga 120 gttttggagg atttgataag gatatgagaa ttattttatt gttaaataaa ataaagattt 180 gaaaataata taaaatattt agttgagggc tgttttgata ttttagatag ttttggggga 240 gaaagtgaga taagataagt aattaagaag agatataaat aggagataga cctagtattt 300 tagaaactca ttgtacgtac gaaaactttt ggagaaaagg gagaaaaagc ttagagagga 360 gcaagagcat agagagggct gcgattttct tcataacaag gtaagggtga gactaataat 420 tcaataatgt taattgttgt aattctgatg attaattgac aagagttagg attgatttag 480 agaagttttg gaattaggtc aaaaccctaa aaattgatga tcaaacggta aaacttgttt 540 agattgatgt agaaaccgtc ctttaacctt agaatatgtt taggatgaat tctggaatca 600 aaattaggct tagaaccatg ttatttgatg gatttttgtg aaaaacggta gtctgcccgt 660 gcctatgttc atcgctcgcc acggcgagck atgatcctcg cctcgcgagt gatgaacatt 720 catcgctcgc cacgcgagcc ctttcccttc gcctcgcgag ttgtttggtg cagctcgcca 780 tggcgagcaa cccttcctcg ccatcgcgag cttaggcaga gtgcatgtca tattttgtgt 840 ttcgaccttt ttagttggac cttggatgcc tttgagtrcc tgaacatacc tagtattgat 900 taggaatgaa tgtaggatca gattgaaccc agaacaacct tagtttggga gttgagtggt 960 actcgccatg gcgagtaaga actctcgcct cgcgagcaca accagaatgt agttgcttga 1020 gtgtttgtgc gatctgtgtc gcacgtgttg atcaagagtg aacccctaat tggtaatgag 1080 acctaatgat gacgtttaat gcagtctgta aagctgttta agatatgttg atattaattg 1140 aacatgaatt aatgtattgt atattcatgc aagatatgaa agtttaatta tgatgcaatt 1200 gatgtgctat tgatataatg atatcatctt gttatgtgac ttgtttatgc tgcttccgtt 1260 atttaactaa gtgcattgca tatagtatga atgagttgaa gtttagctcc aaattattgg 1320 atgcatgtgt gataatgttg attacgatgt tttgttgata agagtccatg cattagcata 1380 tcattgagct tagtcctcac cacgaatatt aggagctttg tcctccgcac gttttatagg 1440 agctttgtcc tccgcacgat taaagtatat taatacttat gatgacgatt ggtaccacat 1500 gcatataagg agtctaagat gcattgtcac attgtcatga ttaagatgcc ttgttgataa 1560 tgattgaata tgtgattacg tgataagtgt ttattgatta tgttatgttg ttcatgatga 1620 attggatata tgattacgtg ataactgttt agcaattatg caaagttaat aatggaatga 1680 ttatgatgtt aatttatgat tcgcaattac attgattaat gttattttgt tatgaaatct 1740 caccccttct gcttgaaaat gttgcccttc gtatgggtaa cttgcaggtg atcgtgctta 1800 gtgtgcagtt tgctttcgtg agttggcctt gccttcactg tgtcgtctag gtcgctctga 1860 tacgtaacgg gatggggtta tatgctataa catgcttcat tctcttacgt gaactaatat 1920 gttattttta ttatgttatt gattaactct gatttgaaat attttggttg gggcctgcgt 1980 gccaaaacga ttttatgatt tatgattata attttccgct gcaatgttta agatattttg 2040 tgaaggttaa attattattt aactgttttt ggattacgtt tctatgtgat atcccgttgt 2100 tatgrtgttt actctgataa atgtttaaga aatttttata ttgggaaaac ggggtgttac 2160 aattggtatc agagcaggtt gatccgtccg gtcaattaga gagtcgtgtc gagtcttagt 2220 aatatttata ttactatctt atgttgttgt tgctactttt gtagaatatc agaaatggct 2280 ggaagaaacg atgctgcgtt agctgctgct ctacaagctg ttgcccaagc tgtgggacaa 2340 caacctaacg tgaatgctgg tgcaaatgct gaagctagga tgttggagac gttcatgaag 2400 aagaaccctc cgactttcaa aggacgttat gaccctgatg gagcccagac gtggcttaag 2460 gagattgaga ggattttccg agttatgcag tgcactgaag atcagaaggt gcggtttggt 2520 actcatcagc tggccgagga agctgatgac tggtgggttg ctattctgcc taccctcgag 2580 caggaaggag ctgtggtgac ttgggctgtt ttcaggagag agttcctgag aagatacttt 2640 ccggaagatg ttcgcgggaa gaaagagatc gaattccttg agctgaagca aggaaatatg 2700 tccgtgacag agcatgctgc caagttcgtg gagctgtcta agttctatcc gca 2753 // ID RAM9B_LTR repbase; DNA; DCOT; 2659 BP. XX AC . XX DT 22-NOV-2006 (Rel. 11.11, Created) DT 19-JAN-2007 (Rel. 11.11, Last updated, Version 2) XX DE Long terminal region of RAM9B retroposon from Medicago DE truncatula. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; LTR; KW Interspersed repeat; retroposon; RAM9B_LTR. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-2659 RA Shankar R., Jurka J.; RT "RAM9B: LTR retroposon from Barrel Medic."; RL Repbase Reports 6(11), 595-595 (2006). XX DR [1] (Consensus) XX SQ Sequence 2659 BP; 742 A; 395 C; 626 G; 893 T; 3 other; tgatttattt tcgtgataag ttatgagttt tggaggattt gataaggata tgagaattat 60 tttattgtta aataaaataa agatttgaaa ataatataaa atatttagtt gagggctgtt 120 ttgatatttt agatagtttt gggggagaaa gtgagataag ataagtaatt aagaagagat 180 ataaatagga gatagaccta gtattttaga aactcattgt acgtacgaaa acttttggag 240 aaaagggaga aaaagcttag agaggagcaa gagcatagag agggctgcga ttttcttcat 300 aacaaggtaa gggtgagact aataattcaa taatgttaat tgttgtaatt ctgatgatta 360 attgacaaga gttaggattg atttagagaa gttttggaat taggtcaaaa ccctaaaaat 420 tgatgatcaa acggtaaaac ttgtttagat tgatgtagaa accgtccttt aaccttagaa 480 tatgtttagg atgaattctg gaatcaaaat taggcttaga accatgttat ttgatggatt 540 tttgtgaaaa acggtagtct gcccgtgcct atgttcatcg ctcgccacgg cgagckatga 600 tcctcgcctc gcgagtgatg aacattcatc gctcgccacg cgagcccttt cccttcgcct 660 cgcgagttgt ttggtgcagc tcgccatggc gagcaaccct tcctcgccat cgcgagctta 720 ggcagagtgc atgtcatatt ttgtgtttcg acctttttag ttggaccttg gatgcctttg 780 agtrcctgaa catacctagt attgattagg aatgaatgta ggatcagatt gaacccagaa 840 caaccttagt ttgggagttg agtggtactc gccatggcga gtaagaactc tcgcctcgcg 900 agcacaacca gaatgtagtt gcttgagtgt ttgtgcgatc tgtgtcgcac gtgttgatca 960 agagtgaacc cctaattggt aatgagacct aatgatgacg tttaatgcag tctgtaaagc 1020 tgtttaagat atgttgatat taattgaaca tgaattaatg tattgtatat tcatgcaaga 1080 tatgaaagtt taattatgat gcaattgatg tgctattgat ataatgatat catcttgtta 1140 tgtgacttgt ttatgctgct tccgttattt aactaagtgc attgcatata gtatgaatga 1200 gttgaagttt agctccaaat tattggatgc atgtgtgata atgttgatta cgatgttttg 1260 ttgataagag tccatgcatt agcatatcat tgagcttagt cctcaccacg aatattagga 1320 gctttgtcct ccgcacgttt tataggagct ttgtcctccg cacgattaaa gtatattaat 1380 acttatgatg acgattggta ccacatgcat ataaggagtc taagatgcat tgtcacattg 1440 tcatgattaa gatgccttgt tgataatgat tgaatatgtg attacgtgat aagtgtttat 1500 tgattatgtt atgttgttca tgatgaattg gatatatgat tacgtgataa ctgtttagca 1560 attatgcaaa gttaataatg gaatgattat gatgttaatt tatgattcgc aattacattg 1620 attaatgtta ttttgttatg aaatctcacc ccttctgctt gaaaatgttg cccttcgtat 1680 gggtaacttg caggtgatcg tgcttagtgt gcagtttgct ttcgtgagtt ggccttgcct 1740 tcactgtgtc gtctaggtcg ctctgatacg taacgggatg gggttatatg ctataacatg 1800 cttcattctc ttacgtgaac taatatgtta tttttattat gttattgatt aactctgatt 1860 tgaaatattt tggttggggc ctgcgtgcca aaacgatttt atgatttatg attataattt 1920 tccgctgcaa tgtttaagat attttgtgaa ggttaaatta ttatttaact gtttttggat 1980 tacgtttcta tgtgatatcc cgttgttatg rtgtttactc tgataaatgt ttaagaaatt 2040 tttatattgg gaaaacgggg tgttacaatt ggtatcagag caggttgatc cgtccggtca 2100 attagagagt cgtgtcgagt cttagtaata tttatattac tatcttatgt tgttgttgct 2160 acttttgtag aatatcagaa atggctggaa gaaacgatgc tgcgttagct gctgctctac 2220 aagctgttgc ccaagctgtg ggacaacaac ctaacgtgaa tgctggtgca aatgctgaag 2280 ctaggatgtt ggagacgttc atgaagaaga accctccgac tttcaaagga cgttatgacc 2340 ctgatggagc ccagacgtgg cttaaggaga ttgagaggat tttccgagtt atgcagtgca 2400 ctgaagatca gaaggtgcgg tttggtactc atcagctggc cgaggaagct gatgactggt 2460 gggttgctat tctgcctacc ctcgagcagg aaggagctgt ggtgacttgg gctgttttca 2520 ggagagagtt cctgagaaga tactttccgg aagatgttcg cgggaagaaa gagatcgaat 2580 tccttgagct gaagcaagga aatatgtccg tgacagagca tgctgccaag ttcgtggagc 2640 tgtctaagtt ctatccgca 2659 // ID SHALINE16_MT repbase; DNA; DCOT; 5758 BP. XX AC . XX DT 23-JAN-2007 (Rel. 12.01, Created) DT 23-JAN-2007 (Rel. 12.01, Last updated, Version 1) XX DE A long interspersed element from Medicago truncatula. XX KW L1; Non-LTR Retrotransposon; Transposable Element; retroposon; KW repeat; ORF; Interspersed; Poly-A tail; SHALINE16_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-5758 RA Shankar R., Jurka J.; RT "SHALINE16_MT: A LINE element from barrel medic."; RL Repbase Reports 7(1), 93-93 (2007). XX DR [1] (Consensus) XX CC The sequence is present in multiple but variable copies in the CC genome in very few complete or nearly complete copies. This CC element is having intact domains for CCHC zinc finger protein in CC its first ORF as well as endo/exo-phosphatase, reverse CC transcriptase and RNAse in it's second ORF. XX FH Key Location/Qualifiers FT CDS 1611..5732 FT /product="SHALINE16_MT_2p" FT /translation="MSLVAWNCRGVGSPSAIPDLKYLVRHFNPDLLFLSET FT LAHRNKIEELRFLLGYDSCFPVDRTGRGGGFALFWRNSLNCXLVDFSNNHI FT TVEIVDSXLGTWRLTGYYGYPNGGRRTAAWNFLRQLSAQFTGPWCIFGDFN FT DILDASEKRGRTTRPPWLINGFRQAVLDAGLSDVPXEGYPFTWFKSLGTPR FT AVEERLDRALANNXWFNMFPNANVETLVAPASDHYPIFVNLAPLPRPHISK FT RHFRYENAWQLEPGFKDLVTNSWQEHSSHTLIPKLSSCAEDMCEWKKNHCN FT KLKKDIEDCRKQLHDTRLESSGEDQIRMVELRKRMQRLLSQDDAYWRQRAK FT THWYKDGDRNTKFFHASATARKKVNRILSLDDDGGHKITNEHGLQEVARNY FT FVNIFQQNSDFSPVIDVINPSVSDNDNDLLTAPFSKAEFSDAIFSMHPDKC FT SGPDGYNPGFYQHFWNLCSDDIFKECCGWLDTGQFPPDLNITNIALIPKGS FT SQVSMKDWRPIALCNVLYKIISKVLANRLKKVLPKCISDNQSAFVPGRSIL FT DNAMVAIEVLHFMKTKTRGEDRYVALKLDISKAYDRMDWNYLRAVLNKMGF FT HNRWIHWMCMCVESVDYSVLVNGEQVGPIIPGRGLRQGDPLSPYLFIICAE FT GLSSLIRDAETRGVLTGTKVCRQAPSVSHLLFADDCFLFFKAKEDQAHVMK FT NILSTYELASGQAISLPKSEIYCSRNVPDDLKTTITDILGVQVVLGTGKYL FT GLPSMIGRDRNATFAYIKDRVWQKINSWSGKCLSKAGREVMIKSVLQAIPS FT YVMSIFQLPTTLIDSIEKMMNSFWWGHGKTTQRGIHWMNWEKLSAPKIHGG FT MGFKDLSAFNLAMLGKQGWKFITEPDSLVSRIFKARYFPSGSYLTANVGHN FT PSYVWRSIMRARFIVRGGARWSIGSGATIPILNEPWLPNGEFISSDIPGAH FT FVHNFTVNSLMNLYDKSWNEQVIRQVFSADIADKILHTPLISQVDEDRIIW FT KAERHGRYSVRSAYRLCVSELIDSSYLWRPGYWSGIWNLKVPPKVKNLIWR FT MCRGCLPTRVRLLDKGVNCPTNCASCDSTHEDLLHVFFDCPFAVQVWNRTG FT LWSSVHHALSHTNSATDAIFYLLETLSAELXQRMSSVIWSIWKHRNLRVWE FT DVTETSAMVVERARNMVADWQLANAPDVLVSTSYPQHAMPTQMGASTSQHH FT NQVLWQPPTAGRYKCNIDAAFSSHLNRTGIGICIRDAEGTFVLAKTMTYPC FT IVSVDVGEALGLHSALQWLSEMQFDNVDFESDSKLTADAFLSTRNDXSEFG FT SIISSCRSLYRTFFSNSRVEFVRRQANXVAHALAREATSLASPAVYYDIPN FT CIETIIINEML" FT CDS join(15..80,93..149,153..167,171..308,312..1169, FT 1173..1247,1251..1322,1326..1388,1395..1472, FT 1476..1511) FT /product="SHALINE16_MT_1p" FT /translation="MLNICYKLQRQHNLCSPRVSSTRLPFLGCRRILGRIP FT LVRSSTSDPSRCFYPDVYIQPNTSFLQNPSLVLSSPSFSCVFLSVSFLSFS FT VSSCPVVFMDPVNLNLAGLTLSEEGLTLNLESEPETAAVLEHCLIGRVLAD FT REIQFAYFSERMSRAWKPGKRVTITKSVPDRFLFQFHHRVDAARVLEEEPW FT LYDNYHIVMDRISPGVVPSCVPLNHIDFWVQIHGLPFGFIQPKVGQGIGSF FT LGTLKTYDDRNTIHSSYMRLKVAIDVTIPLKREWRVRASNGSFVTINFKYE FT KLGVFYYRCGLLGHTDKVCPELFELEADDGIRHWGVGLKPVTQSLGTTATN FT RWLHDPIPAVAPKPSQVLFLLVVKLLLALVILHLSPHACFSVTTYCYETRC FT ARCPQLNASKRYRCKFCFSSAAVALFFHRYFSVLAARPPFGAWFTCCPFSK FT RLHNTRGKWFGFEETETYAGPSEWGNICCRGNGKFCNWFKC" XX SQ Sequence 5758 BP; 1424 A; 1110 C; 1290 G; 1905 T; 29 other; accaaaataa aataatgcta aatatatgtt ataaattgca aagacaacat aacttatgct 60 ctcctagggt ttcctccacc tagggtttct agcgccttcc ttttttgggc tgccgccgca 120 tcttgggccg gattcctctt gtgagaagtt gatctacatc tgatccatga tctagatgct 180 tctatccaga cgtttatata cagccaaata ctagctttct tcaaaaccct agtcttgtgc 240 tttcttctcc ctcgttttcc tgtgttttcc tgtctgtcag ttttctttcg ttttctgtca 300 gttcctgtta gccagtcgtc ttcatggatc ctgttaacct taaccttgct ggcttgacct 360 tgtctgagga gggtttaacc ctaaacctag agtccgaacc tgaaactgct gctgtacttg 420 aacactgttt gattggtcgt gtccttgctg atcgtgagat tcagtttgcc tatttcagcg 480 agcgcatgtc tcgtgcttgg aagccaggca aacgggtcac gatcactaag tctgtgcctg 540 accgtttttt gttccaattc caccatcgag tcgatgccgc tcgtgttctt gaggaagaac 600 catggcttta cgataattac catattgtca tggaccgcat ctcccctggt gtcgtaccta 660 gctgtgttcc cttgaatcac attgatttct gggttcagat tcatggtctg ccttttggct 720 tcatccaacc gaaagtaggt cagggaattg gtagcttttt aggtaccctc aaaacctatg 780 atgatcgcaa cactatccac agttcctata tgcgtctcaa agttgctatc gatgtcacta 840 tcccattgaa aagagaatgg cgtgttcgtg ctagtaatgg ttcttttgtt actattaatt 900 ttaaatatga gaaactgggt gttttctatt acaggtgtgg cttgctcgga catacggaca 960 aggtgtgtcc ggagctgttt gaattagaag ctgatgacgg cattcgtcat tggggagtcg 1020 gcctgaagcc cgtcacacaa agtcttggaa ctactgctac gaatcgctgg ttacatgacc 1080 ccattcctgc tgtcgcacca aaaccatccc aggtgctgtt cctgctggtc gtaaagctgc 1140 tgctggcgtt ggtaattctg catctttcat gaccgcatgc ttgcttttca gtcacaactt 1200 actgctatga aacacgatgt gctcgctgcc cacaactcaa tgctagctaa aaaaggtatc 1260 ggtgcaaatt ctgtttttca agtgcagctg ttgccctctt cttccacagg tacttcagcg 1320 tctagcttgc tgccaggccg ccctttggtg cttggtttac ctgctgcccc ttttccaagc 1380 gactccactg atgaaacacc cgaggaaagt ggttcggatt tgaagaaacg gaaacgtatg 1440 ctggcccttc agaatgggga aacatttgct gctgaagggg aaatgggaaa ttttgtaatt 1500 ggttcaaatg ttagtcatgg ggaggatatt gatatgaatg taattgctac atctttaggt 1560 gatgaacaaa ttgtaacggc aggccctgat gatcaggcct gcctagataa atgagtctag 1620 tggcgtggaa ttgtcggggt gtaggtagcc cgagtgcaat tcctgacctt aagtacctag 1680 ttcggcactt caatccggat cttcttttct taagtgagac tctagctcac cgtaataaaa 1740 ttgaagaact tcgttttttg cttggttatg attcttgttt tcctgtagac cgcaccggta 1800 gaggcggggg ttttgcttta ttttggcgta attctttaaa ttgtcawctt gtygattttt 1860 ctaataatca tattactgtt gagattgtag atagtgwtct tggtacttgg agacttactg 1920 gttattatgg ctatcctaat ggaggtcgta gaacagccgc ttggaatttt cttcgacaac 1980 tttctgctca atttacaggt ccttggtgta tttttggtga ttttaatgac atcctggatg 2040 ctagtgagaa aaggggacgc accactcgac ctccttggct tattaatggc tttcgtcaag 2100 ctgttcttga tgctggttta tctgatgtcc cgrttgaagg ttatccgttt acttggttca 2160 aaagtctagg tactccacgt gcygtggaag aaaggttaga tcgtgcactt gctaataatt 2220 tktggtttaa tatgtttcca aatgctaatg ttgaaacttt ggtggctcca gcttctgatc 2280 attatcctat ttttgttaat cttgctcctt tacctcggcc tcatatatct aaacgccatt 2340 ttcgttatga aaatgcgtgg caacttgaac cgggytttaa ggatctcgtt actaattctt 2400 ggcaggaaca ttcgtcacat actcttatwc caaagttatc ctcttgtgcg gaagacatgt 2460 gtgagtggaa gaaaaatcat tgtaataagc taaaaaaaga tattgaagat tgtcgtaaac 2520 aattgcatga cacgcggttg gaatcttcgg gcgaggatca aattcgcatg gttgagctta 2580 ggaaacgaat gcaacgattg ctgtcccaag atgatgccta ttggcgtcaa cgtgctaaaa 2640 ctcattggta caaggatggt gaccgaaata caaagttttt tcatgcwtcg gctacagctc 2700 ggaagaaggt aaatcgtata ctttctcttg acgatgatgg aggtcataaa attactaatg 2760 aacatggttt gcaagaagta gcaagraatt attttgtgaa tatttttcaa cagaatagtg 2820 atttttctcc tgtgattgat gttattaatc cgtctgtctc tgataatgat aatgaccttc 2880 ttacggcacc tttctctaag gcagagttta gtgatgctat tttctctatg catccagaca 2940 aatgttcagg ccctgatggt tacaatccgg gtttttacca acatttttgg aatttatgta 3000 gtgatgatat ttttaaagaa tgttgtggtt ggttagatac aggacagttt ccccctgatt 3060 tgaatattac taacattgct cttattccta aaggttcttc gcaggttagc atgaaggatt 3120 ggcgmcctat agcactttgt aatgttttat ataaaattat ttcgaaagtg ttagcaaaca 3180 ggttgaagaa agtgctgcct aagtgcattt ccgacaatca gtctgctttc gtcccrggac 3240 gctccatttt agataatgct atggtagcaa ttgaggttct acattttatg aaaaccaaga 3300 cacgagggga agacaggtat gttgctctaa aacttgatat tagcaaagcc tatgatcgta 3360 tggattggaa ttatttgagg gctgtcttga ataagatggg ttttcataat cggtggattc 3420 attggatgtg tatgtgtgtc gaatcagtgg attattctgt gcttgttaat ggtgaacagg 3480 ttggtcctat tattccaggg cgtggtctcc gtcaagggga tcctctytct ccgtatttgt 3540 ttattatttg tgcagaaggt ttatcctcgc ttatcagaga tgccgagacc agaggtgtcc 3600 tcacgggtac naaggtttgt cgtcaagcac cmtcagtttc tcatctttta tttgctgatg 3660 attgttttct ctttttcaaa gctaaggagg atcaagcaca tgttatgaag aatattttat 3720 ccacttatga attagcttct ggtcaagcga ttagtttacc aaagtctgag atatattgca 3780 gtcgaaatgt ccctgatgat ctcaaaacta ccattacaga tattctaggc gttcaagttg 3840 tgttgggcac aggtaaatac cttggcttac cttctatgat aggccgagac cgaaatgcta 3900 cttttgctta catcaaggat cgtgtttggc agaaaattaa ttcctggagt ggtaagtgtc 3960 tmtctaaagc aggtcgtgag gttatgataa aatctgtttt gcaggctatt ccttcttatg 4020 ttatgagtat ttttcagctt cccactactt taattgactc aattgaaaag atgatgaact 4080 ccttctggtg gggtcatgga aaaacaactc aacgagggat acattggatg aattgggaga 4140 agctgtcagc accaaagatt catggaggta tgggtttcaa ggacctatct gcttttaatt 4200 tggctatgtt aggtaaacag ggatggaaat ttattacaga accrgattct ctggtgtctc 4260 gaatttttaa agctcgttat ttcccctctg gttcctatct cacggctaat gttggccata 4320 atccgagcta tgtttggcgt agtatcatgc gtgctagatt tattgtgcgt gggggygcac 4380 gatggagtat aggctcaggt gcgactattc ctattcttaa tgaaccttgg ttgcctaatg 4440 gggaatttat tagtagtgat attccaggtg cacattttgt tcataatttt actgttaata 4500 gtttgatgaa tttatatgat aaaagttgga atgaacaggt gattagacaa gtttttagtg 4560 ctgatatagc agataaaata ctacatacgc cacttatttc tcaggttgac gaggatagaa 4620 ttatctggaa agcggaaagg catggacgtt actctgttcg tagtgcttac agattgtgtg 4680 twtcagaact gattgattct tcttatctyt ggagaccggg gtattggtct ggtatttgga 4740 atcttaaagt tccaccgaaa gttaagaatt taatttggcg matgtgtcgt ggttgtttac 4800 cgacccgtgt acgtttgctg gataaaggtg ttaattgccc tactaattgt gctagttgtg 4860 actcyactca tgaagacctt ttacatgttt tttttgattg tccttttgct gtacaggttt 4920 ggaataggac aggtctttgg agttcggtgc atcacgccct ttcgcatacc aattcagcta 4980 cggatgctat attctatctg ttggagacgt tgtcggctga attaratcaa cgtatgtcat 5040 ctgtcatatg gagtatatgg aagcatcgca atctcagagt ttgggaagat gtaacagaaa 5100 caagtgctat ggttgtcgag cgagctagaa acatggttgc ggattggcaa ttggctaatg 5160 ctccggatgt tcttgtatcc acttcgtatc ctcaacatgc catgccaacg cagatggggg 5220 cttccacctc acaacatcac aatcaagtct tgtggcagcc tcccactgcc ggtagataca 5280 aatgtaacat tgatgcagcm ttctcatctc acctcaaccg tacaggtatt ggtatttgta 5340 ttcgcgatgc agaaggtacn tttgttctgg ctaagactat gacttaccct tgtattgtct 5400 cggtggatgt gggagaagcg ttagggttgc actctgcttt gcaatggttg agtgaaatgc 5460 aatttgacaa tgtggatttc gaatctgact ctaaattaac agctgatgcc ttcctttcta 5520 ctcggaacga cktgtccgaa tttggatcta ttatttcctc atgtcgttct ttgtaccgta 5580 ctttcttttc waactctagg gtggagtttg ttaggcgaca agccaacgwg gttgctcatg 5640 ctcttgcaag ggaggccacg tctttagcta gtcccgctgt ttattatgat atacccaatt 5700 gtattgaaac tattattatw aatgaaatgc tataagcatc tttccttcaa aaaaaaaa 5758 // ID Piggy_MT repbase; DNA; DCOT; 47 BP. XX AC . XX DT 17-NOV-2006 (Rel. 11.11, Created) DT 13-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE A putative non-autonomous DNA retroposon with only TIRs. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; TIR; TSD; Piggy_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-47 RA Shankar R., Jurka J.; RT "Piggy_MT: A putative DNA transposon only with TIRs, from Barrel RT Medic."; RL Direct Submission to Repbase Update (17-NOV-2006). XX DR [1] (Consensus) XX CC The sequence is flanked on both sides by 4 bp TSDs (TTTT). CC Completely self complementary and contains only terminal inverted CC repeats (TIRs) of the transposon. XX SQ Sequence 47 BP; 3 A; 6 C; 14 G; 15 T; 9 other; ccccgttttg actgggtttg ggtatgggta tgggtbcntn udtmrrw 47 // ID Ogre-PT1_I repbase; DNA; DCOT; 13364 BP. XX AC AC149300; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-PT1; Ogre-PT1_I. XX OS Populus trichocarpa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus. XX RN [1] RP 1-13364 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC149300; Positions 17121 3758. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations:.6202..6439: putative intron. CC Note: ORF2+3 (gag-pol) is disrupted by two mutations generating CC stop codons at 7596..7598 and 8922..8924. XX SQ Sequence 13364 BP; 4459 A; 2376 C; 2821 G; 3708 T; 0 other; gaatggcgac tccactgggg acctaagact aagctttgtc tttatttgtt aaaattgcta 60 caaatgcttg ttgtgttgtt tggttttttt ttttattatt attattttat tattttattt 120 tatttattgt tacagcttta gcatccatat ttattcatgt catcatacat atatcggata 180 tggatttatg ccttcacaca ccacgcattt cataataaat atctgctata tcgactttat 240 gttaagtggg agagtagcgg taccccaatg gctttagcct gggtaagact cgtgaaacca 300 tccaactttc gcttgattgt ttactcgata gtggttggta tgcctaaact gatatcattc 360 agggcctcta tcttcacgct acttgtaagc ctcacatcaa cctttcgagg aagatcactg 420 agcatgcgag agacctttca aagactagtt agcaacctac cctgagcatt taatgactag 480 aacttaccct ttaggttgtt ccctatgtaa gtttcactaa ggcaagctta acatatatca 540 ttttcattac aggattattt tttgggtgac ataatggcag ttaatcgaga agtcaccact 600 gttgagtatg ggcttgaatc tgaatcattg catatgactg agggagactg ccctagactg 660 gatgacagtg ggataccgct gctaaaagat gtgagatgtg taataaatga tgccattcgt 720 ttgcttccac tcaccaaata cttggctgat gagacagaat ttactaagat atatgggaga 780 attttgcatc ttctaaatgt tccagtactg ccattagcca taaaagccct gattcatttc 840 tgggatccgg attatcgatg ttttacattt agggatgtcg atatggttcc tacccttgaa 900 gaatacggtg ttttgacaga atttcctgag gatatacata aggtgtactt tcatcaaagg 960 attgaggata ctatagagga gcttgctaag ctattgggaa tccagcaaat gagcttatat 1020 agagagaaaa gtgattctgg gggtttgaga tggaaacgac tagaggagtt gttgattact 1080 aaaaagtcta atccatgtgc taaattagag gtatacagaa tattggcttt gggaatattt 1140 gggttgattt tgtgtccttc aactgctgga attatcagtg tagaggcggc caatttgttt 1200 gttgagtatg agaagaccaa aattaatcct tctgctgcga tcttggctga aacttttttg 1260 tccctcaatc attgcaaaaa gtccgggaaa ggttttatga gatgttgtgt tccattattg 1320 ttcatttgga tggtaagtca catagaatcc gagacaccaa tattccggaa tttttggtgg 1380 tttgatcaaa ggccactcga gttatttgta tcaaatgaat ggaatttttt ttctgaagat 1440 gactggaggg taaaactaca aggaattcca cgaagcaatt ttaattggag agctccttgg 1500 atgagaaatg taacgtattt aatgggttgt gggaagaagc cttgggtacc tttgattgga 1560 gtgactggat atattagcta tgcgcctgct ttagttgcaa gacagtttgg gggcatacaa 1620 agcatcccaa gaacggttga tttagctcaa tttattggag tatacaaagg agctaccatg 1680 gagatgttgg agagcattag gcaggattgg aaatctttgg tactggtgaa aaaggagacc 1740 ggattaagga atcctacagt tagtgaaaag tatcccgaat ggcgtaatgg aggagtctct 1800 tatatggcag aagtttctga atctgtgggc attcgaagga aaagagtaaa ctgtgaagaa 1860 gaattaagaa aacaagtaaa atcgttacaa gctgagctta aagcaaagga agaacagaga 1920 gtgtctttag agcggcagct agccaaagaa aagggtgtaa ggaaaatagc tgaagaagaa 1980 agggactctg tgggtcaaga cttgataaag gcaaaggctg acttggaaac acaaaaaata 2040 attaatcagg acatgacgta ttatatggca aaagctaagc attgggaaga gttagctatc 2100 aagacacaag ctatattgaa aatgcgtcgg gcggacattg ttaagtttaa agaccaattg 2160 ggaaaagctg aggctttaac taaaattcag gaagagcgaa aaacagagtt gaacagtcat 2220 aaggctgaag cagaagcatt gagatctaag ctggacaaag aaaaattaaa gaccgtacaa 2280 cttataggaa accaaaaaat gttaaagcaa cataatcaaa cattggatga tgccaataac 2340 tttttgtcta gaaacaactt gattcatact gagaggataa gggaactaca agatcagatt 2400 gatcgagcag ctgcagaagc ccatttatta cgagtggaag ctcgtcaagt gggaggagat 2460 ataatgaaat atcgaagaag tacggataat accgatcttt ttttaaaagc aatagctact 2520 agaggcagtg ttttttctcc tgtaatagat tagattaatt tttcattgta agcttctgaa 2580 tgagtaataa aagggtttga gacccacatt tttcaatgca aaaatatatg tatatgacgg 2640 aaagcccaaa tgtcaaaaag ctaagcagat ctcttctcgg catcacaaca atgatatcaa 2700 gttcaagctc aacccacata tctaaagaat gacggccata tgtcaccaac aaagagcaaa 2760 tctatatcca atatgttgca ttcacattca tgcatctcat acatttgctt atagattgtc 2820 atattctgca tataacaggt gaaatatagg tccccaaccg aaacgtatcc ataacactcg 2880 ttcacggaag aaaatggaaa atgaagagag aaatcagtta gaaattcaac accaaagaga 2940 gttggaaagc ctgaaagagg atgtagcaag gcttaccagc ctgcttgaac aggctttgag 3000 gcctagagct ggagaaggga catcttctca acaaacattt acacctcagc ctccgcctcc 3060 atttattccg ccatctgaac ctcagcatgc tgctcatttc gtacctactc aatcagcaca 3120 tccaatgagg gtcccccatt ctgtgttgat agaggaagaa cctcaaagga acaagataat 3180 agaggaaaat ggtcatgaaa aactagctgc tttagaagaa agaatgaagg caatagaagg 3240 gaatagtttg tatgatccgg tgaaggccgt tgaaatgtgt ctagtgccta acgtggttat 3300 tcccagaaaa ttcagagttc cagaatttgt taaatatact ggaactcaat gcccaatcac 3360 ccatcttaaa gcatattgta ataagatggc tgaagtagtc tatgatgaga agttattgat 3420 ccattttttt caagacagtt taagtgatgc ggctcttgct tggtatatgc gtttggataa 3480 taccaagatt aaaggatgga aggatttggt taaagctttt attagacagt ataagttcaa 3540 catggatatt gccccagata gatcaagtct gcaagccatg gaaaaaggca ataaggagtc 3600 tgtaagagaa tatgcacaaa ggtggcgcga atcagccgcg caagtaaatc ctccattgtc 3660 ggaaagggag atgactggtt tattttccaa cactttcaaa gccccgtact ttgaatactt 3720 ggtaggtagt gctgcacaaa atttctctga tttggttgtc atagctgaaa ggatcgaaca 3780 agctgttcgg acgggtagga tcgtggatcc tactgaaaaa agaggtttta ttggaaaaag 3840 gaaagaaacg gaagttcaca atgttgaaag ggaaagtaga gggaagaaca cttaccaaga 3900 catttacagc ttcaaaagta ttacacctac cccctctata tccaatataa aattctcttc 3960 acctacaaac acccaaaata acccgataag caaccaaacc aataatgcct accgcccaag 4020 aagaaatttt ccaatagatc aagtgcaact tccaccatta cccatgtctc ttactgaaat 4080 gcaccaaaga ttgcttggta ttggccaggt agcacctgtt cccttagaac ctttacaacc 4140 accatttcct ttttggtata aacccgatca aaaatgtgaa taccatgctg gtgctgttgg 4200 tcatcatatt gatggatgtg tcgcattcaa aagaaaaatc cttcagctca tcaaagctgg 4260 gtggatttct tttgatgaat ctccaaatgt gaattctaac cctctaccaa atcatgcttc 4320 tggaggtggg ggagttaata gcttggagat aggaagggga agtacaacaa ctttaagggt 4380 gactatggat agattgtatg ggatgttgag gcaaacagat tatctaaaga caccagtcaa 4440 aatacaagct gtaaggagtg cgaatgaata ttgtaaatat catcagcagc ttgggcatga 4500 tattgactcg tgcgaggagt ttcatttgga ggtagaaaat ataatgacgt tgggaatgtt 4560 aagattgatg aaactcaaag aagatgagtt agtaggaaca atgactggtt gtaaccagaa 4620 agtggaagtt tgtagatata taccaaccga aaagggtcca ccaagaatga tcctagccaa 4680 gcctatgaat actgttagcg gaagctataa tgcccaaccc tataattatg gttattcctt 4740 tcacagcaca aatcctgccc ctgttttcca tgctgaaata ggaggactca ctcggagtgg 4800 gagatgtttt actcctgaag agttggaaaa ccatagaaaa gccaaaggaa aggatatggt 4860 ggaattgaca aagacagatg aggttaacaa gccagtaagt gatgaagagg ctaatgaatt 4920 cctgaaattg atgaagcata gcgaatatag tgtggttgat cagctaaaga aaacacccgc 4980 taggatttct ttgttgtcat taatgttgag ttcagaattg cataggaacg cacttcagaa 5040 ggttcttaat gaagcatatg ttcctcagga tatcacacaa gactccatag aacatttggt 5100 gggtaggata caagccacca attacctcta ttttaccgat gatgagctgg atcatgaagg 5160 gaccggtcat aataaaccat tgcatatcac ggtaaaatgc aaggattgtg tgattgctaa 5220 ggtgcttata gataatggtt ctgctctcaa tgtattgccg agacatgtac ttgataaaat 5280 gccagttgat gcctctcaca tgaagccaag taccatgact gctagggcat atgatgggtc 5340 acctagacca atcattggga gtattgatgt tgaactaatc attggcccac aaccattcca 5400 agtcacatta caagtaatgg acattcatcc atcatatagc attttactgg ggagaccttg 5460 gatccatgca gcccgagctg tcgcatcttc tttacatcaa cgggtcaagt ttatcatcaa 5520 tgggaatttg gtgactgtga gagctgagga aactttgtca atgataaaaa atgtgtcgat 5580 cccttacata gaaactgaag aaagtaagga tggaaatctg catgcattcg aagttgtaaa 5640 tgctgaatgg gtaccagaaa atacggtacg aagaaagcca gaaatttccg aagcagcaaa 5700 aatggctgct aaatacttct taaagcatga actgccattt caatatgacc acactaccgg 5760 aatgcctgag agggttaatg tgataaaaat gaagtgtgcg gatcaaaggt ttggcttagg 5820 gtttaagcct gggaaagcag atttcaaaag agcagctgaa attagaagaa aaaaaagaat 5880 agcccggatt gaaaggagag aaccagatga agatcgaata gagatcccac caatccatgt 5940 aacatttcca agatccgcat atgtgataaa aactgaggat tatgaggggg gactaagaaa 6000 agaattcaat agtgttacta ttaattatct tgaaaaagtt ggtgaacaag atttaaagga 6060 agaggatagt actcatgaac aattgcccca gctgactatt ggcgttttgg aagatggctc 6120 atcagaattc gtgagaaaac tggctgaggg agaagattta gcaaattggg aaattcatga 6180 agtcccaatt gttttcaaaa agtaatgttt gtttgcttgt tcgttgtttt cattatttgt 6240 attgtttgaa taattgtgcc ttgccaaatc atcatgcttc aagagattgg caataaggtt 6300 ttgtggttga gcccttctat cctttaaatt tcaatgagat catgcaaatt ttctttcaat 6360 cgtgtttttc tttttctctg ttcatttatt tactttccca taaccataca ctcacaatcg 6420 aaacactttc cgctttcagg aaatctgaaa gcggatcgtc gtatacctca caaactcatt 6480 gcactgtgga taattggctt aactttgatg aaactataat tgccatggat gaagaagagt 6540 ttggggagga agatatccat gagttcacaa ggttagggga acaatctgat cgcacatgga 6600 agcctgcaaa agaagaacta gaactgatag atatgggcac cgaacataat aaaagagagt 6660 tgaaaatagg gaagctaatc tctgctggcg taagaagtga attggtcgct cttttacgag 6720 aatatgttga tgtgtttgcc tggtcatacg ctgatatgcc tggtctggat actgatattg 6780 tggtacataa actacctttg atagaaggat gtaagccgat taagcaaaag ttgaggagga 6840 caaggccaga tatactaatc aaagtgaagg aggagataac aaaacagtgg gatgctggat 6900 tcttggaagt agttgattat tctcaatggg tgtccaatat tgtagtagta cccaagaaag 6960 acaacaaaat cagggtatgt gtggattttc gagatttgaa tagggcaagc ccgaaggata 7020 attttccttt accccacata gatgtactgg tggataatgc tgctaagagt tctacttact 7080 cttttatgga tggtttctct gggtataatc agattaaaat ggccgagcaa gacaagaaga 7140 aaacaacatt tgttaccccg tggggaacgt attgctatag agttatgcca ttcggactca 7200 aaaatgctgg agcaacttat caaagagcaa tggtgacact atttcatgat atgatgcata 7260 aagaaattga agtctatgtg gatgatatga tcgctaagtc taaagatgag ggaaaccata 7320 tcccagctct aaagaaatta tttgaaaggc tgagaaaata tcaattaaag ttgaaccctg 7380 caaaatgcac atttggagtg aagtctggga agttattggg attcgtggta agcaataatg 7440 gtatagaggt agaccctgat aaagtgaagg ccatacaagc tatgtcagct cctaagactg 7500 agaaagaagt tcgaagcttt ttggggcgtt taaattacat tgctcgattt atttcacaac 7560 ttacagtcac ttgtgaacca atctttcgat tactttgaaa gaaaaaccct ggagtatggg 7620 atgaagactg tcaagaagcc tttgataaga tcaaacaata tctgcagaaa ccacctctat 7680 tggtgccacc tgtgcctagg aagcctctca ttttgtattt aacagtgact gaatcagcaa 7740 tgggctatgt gcttggccaa catgatgagt ctgggagaaa ggagcaagcc atctactacc 7800 ttagtaagaa attcactgag tgtgaatctc gttacagtat gattgagaag ctgtgttgtg 7860 gtttggtatg gagtgcaaaa aggctccgac agtatatgtt atactatacc acttggttaa 7920 tttcaaagat agatcctcta aaatatattt ttgaaaaacc atacatgtca aataggctgg 7980 ccagatggca agtgttgttg gctgaatacg atatcatcta caaaacaaga aaatctgtga 8040 aaggaagtgc aatcgcagat catttagctg ataacgccgt tgaagactat gagccgttaa 8100 attttgactt ccctgatgaa gatgtgctgg taatagaaag tgattggtgg accatgtact 8160 ttgatggtgc ggtgaatgtg tctggtaatg gagctggtgc tgtaataatt tctccagaag 8220 gaaaacaata tcccatttcc attaagctac agtttagttg cacaaacaac acagctgaat 8280 atgaggcttg cattcatgga ttagaagctg cattggaact gaagataagg aaattagggg 8340 tatatggaga ctctatgttg ataatttgcc agacgaaggg ggaatggcag acgaaagatg 8400 agaaattgaa accatatcaa gaatatctct ccaaattggc tgaaaacttt aaagagatag 8460 agttcaatca tttaggaagg gataagaatc agtttgcgga tgccttagca accttggcct 8520 ccatggccac aatcgattgt ggtatcagag tacatcctat aggcattgat atcagaagtt 8580 ctcctactca ttgttgttta gtagaagaag aagtagatgg cagtccttgg tatacagata 8640 taaaaagatt catccaatat cgagaatatc cttctgaagt ttcaaaaaca gataagaaga 8700 ctctgagaag aatggtaatg gagtacttta tagatggaga aatcttatac aaaaggtcat 8760 ttgatgggac tttattaaga tgtctggaca gatcagaagc caataaagcc ttgtgtgaag 8820 tgcatgaagg aatttgcacc acccatgcaa atgggcatat gatggcaaga caaatacaaa 8880 gagctgggta tttttggttg accatggaaa aggattgtat ataatttgtc cgaaaatgtc 8940 ataaatgtca ggtgtatagt gacaaaatca atgcaccccc agtgccctta ttcaatatgg 9000 tgtcaccttg gccattcgcg atgtggggaa ttgatgtgat tgggcctatt aatccaaaag 9060 ccagcaatgg tcatcggttt atcttggtcg caattgatta ttttacaaag tgggtagagg 9120 cctgctcata tgctcatgtg actcagaagg tggtcaagcg attcattgag agagatctaa 9180 tttgtaggta tggtttgcca gaaaggatag taaccgataa cgccaagaac ttcaatggga 9240 agatgatcgt ggaattatgc actaaatgga aaatcaagca ttccaattca tccccttaca 9300 gaccaaaaat gaatggtgct gttgaagctg ctaacaagaa cataaagaag attgtccaga 9360 aaatggtggt cacatataaa gattggcagg aatggcttcc ttatgctcta catgcctatc 9420 gaacagcaat aaggacgtca acgggggcta caccttattc attagtttac ggaatggagg 9480 cagtgatgcc cttggaagta gagattcctt ctctaagggt cctcatggaa tctgagctag 9540 aagaggctaa atgggctgag aaggggcaga tccgatacga ccagtgagaa gagattagct 9600 gcaatttgtc accaccaact gtatcaaaac aggatagcaa gagcatatga cagaaaagtt 9660 cgaccaagag agtttaaaga aggagatctt gtattgagaa aaatcctatt actacctagt 9720 gagaatcata gcaagtgggc acccaattat gaaggtccct atgtagtaaa gaaggcattc 9780 tctggaggag cattgatatt gacaggaatg gatggagaag atttgagtag gccagtgaat 9840 tccgatgccg tgaagaaata ttatccatga ttgtataagt tctcatcaaa tcaataaaag 9900 ttttgccaag aaattcactt tgcatatctt ttctatctct cataaatgtt tattgatatc 9960 aaagaatcag taaatacact cttgaagcct tgcatgatct catagattca attcattact 10020 tttaccaaaa tcagtttccc tatttgagtt tcaaaaaatt tgatctggca ttttgatttc 10080 aaaaataatt tgatgtttat tcaaaaatga tatttttgac attctacttg tagaatgaca 10140 agtgaatcaa gcaactcctt catagaggtg accaaaatct aaaaagaaaa agaaaaaaga 10200 aatgaataaa tacccttacc ccatgactct tgaataatgt gtttttaaat gtatgaataa 10260 cggtatgtag tgaacttgtt gctcataact catgaaatgc atctttgcaa agactaaacc 10320 atcatactag atgaggtcaa agtttattga tcatagctgc ttgcgcttga aatgaggaaa 10380 ggccatcttt gttattcctt tcacgttctg aaataagtac atcccttgcg atcccttttt 10440 gagcctgaat aatttttctt tcataaaaac atcccgacta agatcacacc ctacactggg 10500 gcaagtgaaa tttcaatgat caagaaagat gataaagccg tgagaaagcc gaaaggcaaa 10560 agagcccaag aaactcaaat gctagggggc atgaccaaat cacaagaaaa agtgataacc 10620 aagataaagt gagtatgctc tagcgaagca atgaaagaga aaaacagaaa aagggcaagt 10680 aaaataagag cggcaaaaga aaagatgaat gacgtcaaga gtcaaactgt tgactgtgat 10740 cttcagtctt tgaaaccctg aaaacactct ttgagcctta tgaatccttt tctttcatag 10800 ccaaaaacca cagcctatgt tacgtgcctg tagaagtcct ttctaatcaa gcaagcaagc 10860 aatctagaac aataaataat gctctcaaaa tgcaaagaat attttttcat aagattcatg 10920 atatcaagaa taaactactc attattattc atgctgataa aaataaatgt tcaaaaaaaa 10980 aaagacaagt tttttctcat acaaaacctc gagctttttc tcgagccctt cacttcgaaa 11040 caaaaggtca tctcataaca tattttcacc gaagacctca ttgccaaaca caagagcaaa 11100 taatctcttt ttcaagaaag aaaataacca aggagttgca agatttcaaa aacaaattgt 11160 tttagactcg catcgaaata atttttgttt tcaaaatgca agatcaagat ttcaagattc 11220 attctagacc catacttctt caccaaactg aaaaggagag aaatgagaga atggtctctt 11280 aaaaccatta tttgtctaag tcgctgacag ggcacacttg ggggcaatga ccagtacaag 11340 ggggcaatat tgtgcttaag aaaaatctat atgttctaaa aaaaaaaagg gaacatttcc 11400 tacaacaaga caagggggca ttatggttta cgaaagacag tttgatcctt tcatcaagtg 11460 acaccaaata tttttatcag tgagacgagg agtaatgaat gatcccctca aactatttga 11520 cgagacagaa aatctctagc aagcaagtgg gtcatgatgg gcaccaccaa ggctgagttg 11580 tgcaaacaaa tctggaaaaa gtcttatatg ggctaactcg agtgggctaa aaagccaagc 11640 gacaaagatg actcaaatca gatagcaaga tctcaccaac caagcaacga gaagactaag 11700 aagaaattgg gggcctatat ttcaaatcag gtaaagatgc atgcatatca tttaaacttt 11760 gagacattgg acaatgagtt ttgcaaattt tattagagaa aattctaacg gaatccatca 11820 agcggaaggc caacttgaaa tggcgaacat tgaaattgct tttgaaaaat tttcactttt 11880 gagaattctt caatctgggc aggtcgccca tgagaattag gccacctgaa aaatcttttt 11940 atttttccac cacctttcag tttccactcc tgaggtagtg cattttctat cctacctcat 12000 tttgagttct tttcgagcac accttcgagc cctcgtctta tttcttttcg agcgcgcctt 12060 tgagccctcg accatcaaag gtagtgcatt tcctatccta cctcaattca agcgcgcctt 12120 cgagccctcg tcttatttct tttcgagcgt gccttcgagc cctcgaccat caaaggtagt 12180 gcatttccta tcctaccttc ttttgagtgc gccttcaagc cctcatttcc ttcgagcttc 12240 catctattaa ataatgcgcc ttcgagccct atcatgtctt attaaaaaaa aaaaaaaaat 12300 tcatattttt ccactgggca ggtaacccat tacaatatac catctgggca ggtaacccat 12360 tacaatgtga ccatctgggt aggtaaccca ttacaatata ccatctgggc aggtaaccca 12420 ttacaatgtg accatctggg taggtaaccc attacaatat accaactggg caggtaaccc 12480 attacaatgt gaccaactgg gtaggtaacc cattacaata taccatctgg gcaggtaacc 12540 cattacaatg tgaccatctg ggtaggtaac ccattacaat ataccatctg ggcaggtaaa 12600 ccattacaat gtgaccaact gggtaggtaa cccattacaa tataccatct gggcaggtaa 12660 cccattacaa tgtgaccatc tgggtaggta acccattaca atataccttc tgggcaggta 12720 acccattaca atgtgaccaa ctgggcaggt aacccattac aatataccat ctgggcaggt 12780 aacccattac aatgtgacca actgggtagg taacccatta caatatacca tctgggcagg 12840 taacccatta caatgtgacc atctgggccg gtaacccatt acaatatacc aactgggcag 12900 gtaacccatt acaatgtgac caactgggta ggtaacccat tacaatatac catctgggca 12960 ggtaacccat tacaatgtga ccatctgggc cggtaaccca ttacaatata ccatcataaa 13020 aaaaaaaaaa tcctcgtatt tttcaatcat tgggtaggtc gcctggaaca attagaccac 13080 tcgcgaaatt cttcgcgttt cttttatcat tgggcaggtt gcccaaaaca atttgatcca 13140 tttcaaaaaa aaaaaaaaaa aaaaacaaca acaacaacaa aaaatgggtc gtcttccaaa 13200 taacttgttc tctctgtaaa agtcatatgt caatctactg ttttcaaagt tttcaagact 13260 tttttttgta tctacttttc tttataaatt tactacacaa agctaaggaa aaatgaaaat 13320 tttcaatatc tttgtattgt aaatattata aagagggggc aact 13364 // ID MITRAV repbase; DNA; DCOT; 372 BP. XX AC . XX DT 26-JAN-2007 (Rel. 12.01, Created) DT 26-JAN-2007 (Rel. 12.01, Last updated, Version 1) XX DE A putative non-autonomous miniature DNA transposon from Medicago DE truncatula. XX KW DNA transposon; Transposable Element; Nonautonomous; MITRAV. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-372 RA Shankar R., Jurka J.; RT "MITRAV: A miniature DNA transposon from barrel medic."; RL Repbase Reports 7(1), 38-38 (2007). XX DR [1] (Consensus) XX CC The element is present in a high copy number across the Medicago CC genome as well as it is highly conserved. It has features of CC Harbinger type miniature transposons with 3 bp TSD (TAA) as well CC as ~34 bp terminal inverted repeats. XX SQ Sequence 372 BP; 142 A; 72 C; 57 G; 101 T; 0 other; gggggtgttt gtttcctggt ttaaaaaatt attcccagga acatggaggt tggaattata 60 gattcctatg tttgttacaa agttaaaaaa ataactcccg ggaataaaga attcctagga 120 aaaaaataac ttccacttac ccatgatttt attcccaaag aaagtgggcg ggaataaaag 180 attcccatgt aaatggtact aaaatggaaa taactaccca tatacccact atcacaaaca 240 attcccatga atctgacaat tatttaccaa acacaatttt ctaaaaatac tcaggaataa 300 gatgcccatt attatttccc aggaaaggtt aatcccagga atgaaatttt aaaccgtcaa 360 acaaacgccc cc 372 // ID Copia25-VV_I repbase; DNA; DCOT; 5033 BP. XX AC . XX DT 31-AUG-2007 (Rel. 12.09, Created) DT 01-OCT-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Copia25-VV_I. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-5033 RA Obukhanych T., Jurka J.; RT "Copia25-VV."; RL Repbase Reports 7(9), 782-782 (2007). XX DR [1] (Consensus) XX CC This is an internal portion of the Copia25-VV LTR retrotransposon CC family. Individual elements are on average 95% similar to CC consensus. Long terminal repeat (LTR) sequence of this CC transposon is deposited as Copia25-VV_LTR. Target site CC duplications (TSDs) are 5bp-long. XX FH Key Location/Qualifiers FT CDS 878..5023 FT /product="Copia25-VV_I_1p" FT /translation="MEENKNSVADIVPIVSKITEHKLNGSNYIEWSKTIKI FT YLRSVAKDDHLTEEPPNDNTRKLWMQDDARLFLQMKNSINSDIVGLLSHCE FT FVKELMDYLDFLYSGKGNVSRMYDVWNAFHCPEKGAKSLTAYFMDFKKVYE FT ELNALMPFSPDVRVQQAQREQMVVMSFLSGLPSEFETAKSQILSGSDIGSL FT QEVFSRVLRTENVSSSQHTNVLVAKGGNAENARRVNNRGGNRAFENRGNDS FT STIVCFYCHEAGHTKKNCRKLQNRNRRIQTANVATSDTATFSDSSDKIVTM FT TAEEFAKYSQYQDALKASTPVSALAESGKTCLVSSSNKWIIDSGATDHMTG FT NHKTFSTFRTHSAPPVTVADGSTYEIKGSGTVKPTSSITLSSVLNLPNLAF FT NLISVSKLTKNLNCSVSFFPDHCVFQDLMTKRTFGKGHVSDGLYILDEWVP FT RPVACVSTASPVEAHCRLGHPSLPVLKKLCPQFDTLPSLDCESCHFAKHHR FT SSLGPRINKRAESLFELVHSDVWGPCPVTSQTGFRYFVTFVDDFSRMTWIY FT FMKNRSEVFSHFCAFSAEIKTQYDVSVKILRSDNGKEYVSNSFQNYMSHNG FT ILHQTSCVDTPSQNGVAERKNRHLLETARALMFQMKVPKQFWADAVSTACF FT LINRMPTVVLKGDIPYKVIHPQKSLFPLEPRIFGCTCYVRDTRPFVTKLDP FT KALQCVFLGYSRLQKGYRCFSPDLNKYLVSTDVVFSEDTSFFSSPTSSASE FT EEDEEWLVYQVVNSRPTVGQSSVVDSDASLAHLGPVVNIPPAPVKPPIVQV FT YSRRPVTTDTCPAPAPSSSDPSSDLDLPISLRKGKRHCKSIYSIANFVSYD FT HLSSSSSVLVASIDSISVPKTVTEALNHPGWKNAMLEEICALEDNHTWKLV FT DLPQGKKVVGCKWVFAVKVNPDGSVARLKARLVARGYAQTYGVDYSDTFSP FT VAKLNSVRLFISIAASQQWMIHQLDIKNAFLHGDLEEEVYLEQPPGFVAQG FT EYGKVCCLKKALYGLKQSPRAWFGKFSKEIQAFGMNKSEKDHSVFYKKSAA FT GIILLVVYVDDIVITGNDHAGISDLKTFMHSKFHTKDLGELKYFLGIEVSR FT SKKGMFLSQRKYVLDLLKETGKIEAKPCTTPMVPNVQLMPDDGDPFYNPER FT YRRVVGKLNYLTVTRPDIAYAVSVVSQFTSAPTIKHWAALEQILCYLKKAP FT GLGILYSSQGHTRIECFSDADWAGSKFDRRSTTGYCVFFGGNLVAWKSKKQ FT SVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQAALH FT IAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNG FT TRVEYFCNKLGMINIYAPA" XX SQ Sequence 5033 BP; 1326 A; 1047 C; 1131 G; 1527 T; 2 other; tggtatcaga gccacgtttg gttcaaggga attttctggg ttttgggttt tgttcctaac 60 aatctggaac agtaacctgt tacgtgtcac tgccttctkt ttggtctgga ttgcgtcacc 120 gccgacccag ggaggagcgc attcttgttt ccggagcgtg ggagtgcttg aggccgccgt 180 ttcttcaccc atttgacktt ccgacgtttc ccatctctcg atctgacttt ccgacgtttc 240 tcatccggtg ttcgatcaac tgtcgaggga tcgcaaagat tcatcgacga ctgcggaatc 300 gctgtcgcta gtccggcgaa ccttgcccct cgattcacct tcctgagacg ccttcttctc 360 agatcccgcc accctctcac gccttctctt cgccccgttc tccgtcaacg cggtcttcac 420 ctcggccgga accctaagcc cccccaccga aaactcagca cggcgccttt cctcatcggc 480 agcaccgtgt tcgcgctcaa atccacgcca gaaaacaaac cgtcgccgtc gtccgagatc 540 attgaaagcc ccggcttcca ctcttctcgg gcccgacaca cctctgtctc cggcttgtgc 600 tgccgagctc cagcgccgga gccgatccag ttgaactgct ccacttagaa accggaccga 660 tctgagtttc ttcgcccacc ttggtcgcca cgactcacga ctttcagggt gagaaagaga 720 gggagtcaag ggtttgacgc acgcttttga cccttttgac gctttttgac accttgtaag 780 agaggtactt gtctctttct ttcttcttgc tgtggtgaat tgcaatttct ggtctgggct 840 gggtgtaaaa ttactttgga gattgaattt tattgtcatg gaagagaata agaattctgt 900 tgctgatata gtgcctattg tgtcaaaaat aactgaacac aaattaaatg ggtctaatta 960 tattgaatgg agcaagacta tcaaaattta tttgagaagt gttgctaaag atgaccactt 1020 gactgaggaa cctcctaatg ataacactag aaaactttgg atgcaagatg atgcacggtt 1080 atttctgcag atgaaaaact ctattaatag tgatattgtt ggtctgctga gtcattgtga 1140 atttgttaaa gagctaatgg attatcttga ttttctgtac tctggaaaag gaaatgtatc 1200 tcggatgtat gatgtatgga atgccttcca ttgtcctgag aagggagcta aatccctcac 1260 tgcatatttt atggacttca agaaggtata tgaggaattg aatgcactta tgcctttcag 1320 tccggatgtt agagtacaac aggctcaacg ggaacagatg gttgttatga gtttcttatc 1380 cggtctccca tctgagtttg agactgcaaa atctcagatt ctttctggtt ctgacattgg 1440 ttcccttcag gaagttttca gtagagttct acgaactgag aatgtctcat cttctcagca 1500 caccaatgtt cttgttgcaa aaggaggaaa tgcagaaaat gcaagaaggg tgaataacag 1560 gggcggaaac agggcatttg aaaatcgtgg caatgattca agtacaattg tgtgttttta 1620 ctgccatgag gctggccata ccaagaagaa ctgcaggaaa ttgcaaaatc gaaatcggag 1680 aattcaaact gccaatgttg ctacatctga tactgctaca ttttcagact cctcagacaa 1740 gatcgtcaca atgacagcag aagagtttgc taaatattca cagtatcaag acgcactgaa 1800 agcatctact cctgttagtg ctctggcaga gtcaggtaaa acatgtcttg tctcctcctc 1860 aaacaaatgg ataattgatt caggtgccac agatcatatg acaggtaatc ataaaacttt 1920 ctctaccttc agaacacatt ctgctcctcc tgttactgtt gctgatggtt ctacctatga 1980 gattaaaggg tctgggactg tgaaaccaac atcttctatt acgttatctt ctgtgttaaa 2040 cttaccaaat ttggccttta acctaatctc tgtcagtaaa cttaccaaaa atctgaattg 2100 tagtgtctca tttttccctg atcattgtgt gtttcaggat cttatgacga aacggacatt 2160 tggtaaagga catgtatctg atgggctcta tattcttgac gagtgggtac ctcgaccagt 2220 tgcgtgtgtc agtactgcct ctcctgttga agctcattgt cggttaggac atccttctct 2280 accggtgttg aagaaattat gtcctcagtt tgatacttta ccttcattag attgtgagtc 2340 gtgtcatttt gcgaagcatc atcgtagttc tttaggccca aggattaata aacgggctga 2400 gtctttgttt gagttagtac attctgatgt ttggggtccg tgtcctgtta cttctcaaac 2460 tgggtttcga tattttgtta cctttgtgga tgatttttct cgaatgactt ggatttattt 2520 tatgaagaat cgttcagaag tattttctca tttttgtgca ttctctgctg agattaaaac 2580 ccaatatgat gtgtctgtga aaatattaag aagcgataat ggaaaagaat atgtgtctaa 2640 ctcatttcag aattacatga gtcacaatgg gattcttcat caaacatctt gtgttgatac 2700 tccttctcaa aatggggttg ctgaaagaaa aaacaggcat ttacttgaga cggctcgtgc 2760 cctcatgttc cagatgaagg ttccgaaaca gttttgggct gatgcagttt ccacagcttg 2820 ctttctgatc aaccgtatgc ccactgtagt gcttaaaggt gatattccgt acaaagtaat 2880 acatccacag aaatcacttt ttccacttga accaagaatt tttggatgta catgctatgt 2940 tagagataca aggccttttg ttactaaact tgatcctaag gcgttacagt gtgttttctt 3000 ggggtactca agactgcaaa agggctatag atgtttctcg cctgatctca ataagtatct 3060 agtatcaacg gatgttgtgt tttcagaaga cacatccttt ttctcttcac ccacaagttc 3120 tgcaagtgag gaggaggatg aagaatggct tgtgtatcaa gtggttaatt caagaccaac 3180 tgttgggcaa tcaagtgtgg ttgattctga tgcatctctt gctcatttgg gtcctgttgt 3240 taatattcct cctgctccag tcaaaccacc aattgttcag gtgtactctc ggcgcccagt 3300 gacaacagat acatgtcctg caccagctcc ttcgtcatct gatccttcca gtgatctcga 3360 ccttcctatt agccttcgaa aaggtaaacg acactgcaaa tctatctatt ccattgctaa 3420 ctttgtgtct tatgatcacc tgtcatcttc ctcaagtgtc cttgtagcct ctatagattc 3480 tatttcagta cctaaaactg ttacagaggc cctgaatcat cctggttgga agaatgcaat 3540 gcttgaagaa atctgtgcat tggaggataa tcatacatgg aaacttgttg atttgcctca 3600 aggaaagaaa gttgttggct gcaagtgggt ctttgcggta aaagttaatc ctgatggctc 3660 tgtggcacga ctgaaagcca ggcttgtagc tagaggatat gctcagacat atggagtaga 3720 ctattctgat actttctctc cagttgccaa actcaattca gttcgactat ttatttctat 3780 tgctgcttcc caacagtgga tgatacatca gttagacatc aagaatgctt ttcttcatgg 3840 tgatctagag gaagaggtct atctggagca acctcctggg tttgttgctc agggggagta 3900 tgggaaggtt tgttgtctga aaaaagctct ctatggattg aagcagagtc cccgtgcttg 3960 gtttggaaaa ttcagtaagg agattcaagc atttggcatg aacaagagcg agaaagatca 4020 ctccgttttc tacaagaaat cagctgctgg tatcatactt cttgtggtct atgtcgatga 4080 tatagttatt acaggaaatg atcatgcagg aatctctgat cttaagacat tcatgcattc 4140 caagtttcat acaaaggact tgggtgaact gaagtatttc ctgggaatag aagtatcaag 4200 gagcaagaaa gggatgttct tatcacagag gaagtatgtg cttgatctgc ttaaagagac 4260 cggtaagata gaagcaaagc catgtactac cccgatggtt cctaatgtac aacttatgcc 4320 agatgatgga gatcccttct acaaccctga aaggtatcgg agagtggttg ggaagctgaa 4380 ttatctcacc gtgacgcgac cagatattgc atatgcagta agtgttgtta gtcagttcac 4440 atctgcgcct acaataaagc attgggcggc tttagagcag attttgtgct atctaaagaa 4500 ggctcctggt ctaggcatac tatatagtag tcagggacac actcgcattg agtgtttttc 4560 tgatgcggat tgggcaggtt ctaagtttga tagaagatcc actacaggtt attgtgtgtt 4620 ctttggcggg aatctagtgg cttggaaaag taagaagcag agtgttgtat cccgttcgag 4680 tgcagaatct gagtataggg ccatggcaca ggctacttgt gaaatcatat ggatacatca 4740 actcttatgt gaagtgggaa tgaagtgcac aatgccagca aagctttggt gtgacaatca 4800 agccgctctt catattgctg cgaacccagt ctatcatgaa agaaccaaac acattgaggt 4860 cgattgtcac ttcattcgtg aaaagattga ggaaaatcta gtctctactg gctatgtgaa 4920 gactggagag caacttgggg atatttttac aaaagctcta aatggaactc gagttgagta 4980 cttttgtaac aagctgggca tgatcaacat ctatgctcca gcttgagggg gag 5033 // ID Ogre-SD1_I repbase; DNA; DCOT; 13767 BP. XX AC AC146506; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-SD1; Ogre-SD1_I. XX OS Solanum demissum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum. XX RN [1] RP 1-13767 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC146506; Positions 57519 43753. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC Additional annotations: 3869..10754: ORF2+3 (gag-pol; CC contains multiple mutations generating stop codons and CC frameshifts); 7234..7394: putative intron. XX SQ Sequence 13767 BP; 4465 A; 2428 C; 2876 G; 3998 T; 0 other; gatggcgact ctggctgggg ataaccagaa ttcgagcttc aaaatattga cttgcgtatg 60 actttgatct ttatttttat tattattctt tttggatatt gtgttgttag tatcatgtgt 120 tatttgctac ttgtttatcg ctttgatatt atgtgaattg ttatatatct gtctctcctc 180 gcgcacccat ctgagtcttt tgagatactt tattcggaga tgcgattacg ctcctgagcc 240 atgagatacc agagatgcga caacgctcct gggaaggatt ctatagtaac acatgtctta 300 agatgggaag gactaatagt gaggccggaa agccctgcta ccggtaagct atcccttccc 360 aactcgagta gtccactcgt tttacgacca gtctagacac tcattccatt aggttgctaa 420 cttagtaaaa caagtctcag cgatgattat tcctaatagg atccgattta tctgcatcat 480 gcatattttt aaactaatgg ggctcgacac aagggtcgag tccttctagg acaggtaccc 540 cccacttaag acgttcatgt acattttttg ttctacttgt tgcactatta ggaagactat 600 acaaaatgtc gaccgacttt ggatgaatta attaaaaaaa aaaagaagga aaattctaaa 660 aatacaaagg tcttagtgtc cttcttttat taaacacttt tactttgtca aaatttgtac 720 ttctttcata aatataagat tttttttttt ttagttatta ttactatcat ttttttttta 780 aaaaaggggt aaagataaat taagaaaaaa taaaataaaa ccaactatac tattgttttt 840 taaaagtcta gcaggattat ctaataaaga ggggtttaga ctataacaaa aagatttgag 900 tgcttatttt tcttatgtgt tttttttaat ttttttttca ctcttcttat aataataatt 960 atttagaaaa aaaaagaaat ttatactaat tttgttttct cctttcaact ctactcagat 1020 tatttaatag gagatttgaa aaaaataaat aaaatgtgat ggtttgtttt ccttagtgtc 1080 caatcatgtt tttactatta tatacaataa tttttacttt atttttaatt ttataaaaaa 1140 taaaaatgtg ttttattaag tcctaatttg tcattatcat aatataggaa aatatgaatc 1200 catatggaaa gggagataag aggccaaagg aggaccaatc acctcgcgtc atgatattag 1260 ataaggctcc gacacttttg aaggcatggt atgaaaatat gacgaatcat gggaaagaag 1320 tggtattcaa acgcttggga tttctgcgaa gccttttgta tgttgagcca cgacgggact 1380 tgatagaagc actagttcat ttttgggatc caataaaaaa tgtattccac ttttctgact 1440 ttgaactcac tcccacacta gaggagatag gcgcattcat aggaaggggt aaaaatcttc 1500 acgaaggaga acctatgata ccaaaacata tcaatggtag gaggtttttg gagttattgc 1560 acataaatga gaatgaaata ggtggttgcc ttgataacgg atgggttccg ttagaatttt 1620 tgtacaaaag atatgggcga aaggatgggt tcgagttata tggaaagaaa cttcataata 1680 acgggtgtcg tttgacctgg gaaacacaca gttatgatgc catcacagta gcttttttgg 1740 ggatcatggt gtttctgaaa aggggaggaa agatcaatat aaatttggct gcagtcatta 1800 cagcttttga gaaaaagcct aatatcaccc tcgtacccat gattctagca gacatctacc 1860 gcgctttgac aatttgcaag aatggaggag attactttga gggatgcaat atgttactac 1920 aactatggat gatcgagcac attcgtcatc acccttatgt agtggacttc aaagtagaat 1980 gtaatgatta cattgggggc cacgaggaaa gaatcaaaga tcatagtttt ccgaagggta 2040 ttgaggcttg gaagaaatac ctcaataatc tgactgctga caagattgtg tggaattatc 2100 attggtttcc atcagccgag gtgatataca tgtctacctt tcgatcgttc atcgtcctaa 2160 tgggccttcg aggtgtccaa ccttacatgc cacttagagt tatgcgacaa cttggtcgac 2220 gccaattttt accacctaat gaagatatac gggaattcat gtatgagttt catcccgaga 2280 ttcctttaag gaaatcagag atattcaaga tttggggggg atgcatgctc tcaagtcccc 2340 acgatagggt agaggatcgc accaagggtg aggtggacca agcatactta gaatgggttc 2400 atgatcaacc ctctcctaag gtattgccag aaggatcggt gaaaggacct gtagatcgag 2460 aagcagaaat tgaggttagg attaagcaag ctcgcctcga agttgagaga agctatagat 2520 ctactctgga ttgcctgagt aatgacctga agaatgctaa agaagagttg gcccaacgtg 2580 atgcgatatt tgaagtaaga gttagaaaac atcgttctac cattctgacc ttacaagaag 2640 acttgggcat tgtcataagc gctatggagc aacaagagga ggagtataca aaagaaaagg 2700 ttcaggtcat ctgcacacaa tctagactcc agaatcaagt taaggcttct atggaacggg 2760 aaagggaaat aacaaggcgt tttagtgcat atcaggcaga atgtgaggtt gagagaggtc 2820 aaaggatagc cgagcgagat gcactccacc ttcaaattga agagctccaa gaacagaggg 2880 agaatttgac gcatgaagtc aatactactc gacattggtt acagaattgt tatgacaata 2940 tgaatgaagc cagagatcga gtacttcaac tcagggatgc actcaatgat gtttatgctg 3000 gttatttcca ccagaataat gagaggttgg gccgccagac acatgttctt gctccacatc 3060 taccaaaggc cttggctagg atttataagg gtcttgggga tgattgagat ctgaggattt 3120 agtttctttc cgagtctgtt ttcttttctt agttattagt tgttgctttt atttatttat 3180 atttttgtta atcattttga gtctatctta gtcttagcta cttctattct catgttttat 3240 tcaaatcatt gtgttaagaa tatttgaaaa tgaatgaaaa tgatttactt ttggtcaact 3300 catgtacatt tattattcta aaaaaaaaaa ttaaaaaaaa attaaaaaaa taaattaaaa 3360 aaataaaata ataatatatt attatctttc acgaactacg taatgatctg attcatgttc 3420 aacatgatac gtaggcaacc ctcaacgggt tcgatcgaaa tgcatttcaa aattattcaa 3480 ataagtaaaa tataagacta agagacataa tcaagtagtc taaagccggg atgaaacata 3540 aaagccttcc gaaactcatt ttagaaacat aaataattta aggtgcataa catacaacgt 3600 gtgattatcg tttgcaaaac actaaaccct atcatgtttg ttttttttgt aaaagaaaag 3660 aaaaaaaaag agttttaagg tggttggttt gtgattagag ctgacatctc atcaatacta 3720 caccacatca aaagggaaag ggaagatgac gcgcaaggag ggaacagagt cgggaaatga 3780 cgacgtccaa atagttgcac aagaatcggt gtctgtggaa gaggtaaaaa tgttacgaca 3840 acaaatggcc gaaatgtatg aagcttagat gaatgggcaa gctcctccat cttcgattcg 3900 ggaatacctg aatgtgaata tgccattccc tatccaagta tcgaccaatg atctaattta 3960 tccacctgga ttcggcccct acactaacac atcgaacgtc gctgaaactt ctacagtgcg 4020 tcccttgaat acacctatga tgagtaaccc gttatttgtg ccaactgcac cgactaatag 4080 cacttcaaat ccaacagtgg tgcccaaatc caacaatgat ccttcattcc aagttcttca 4140 tgaccatggc tacacccctg aagaggctct taaaattcca agttcttatc cccagactca 4200 tcaatatagt tcccccttca aaattgagaa gacagttaag aatgaggagc atgaagaaat 4260 gactaagaaa atgaagagtt tggaacatag tataagagat atgcaaggac tagggggcca 4320 caaaggcatc tcattcagtg atttgtgcat gtttccccac gtccatttgc ctactggttt 4380 taaaaccccg aattttgaga aatatgatgg tcacggagac cccatagctc atttgaagag 4440 atattacaat caattgagag gtgcagaggg caaagaagag ttgctcatgg cctattttgg 4500 ggaaagccta gtaggaattg cgtctaaatg gttcatagat caggatatag ccaactggca 4560 tacgtgggat gatttggctc gatgttttgt gcaacaattc caatataata ttgatattgt 4620 gccagaccgc tcctcacttg ctaacatgag gaaaaagacc acagaaaatt ttcgtgaata 4680 tgccgttaga tggagagagc aagctgctag ggttaaacca ccaatgaagg agttagagat 4740 gattgacgtt tttctccaag ctcaagaacc tgattacttt cattacttgc tttctgctgt 4800 tgggaagaca ttcaccgaag ttatcaaggt tggggaaatg gtggaaaatg gcatcaagtc 4860 tgggaagatc gtaagccaag ctgctttaaa agccacaaca caagcgcttc caaatggttc 4920 tggaaatatt ggagggaaga aaagaaggga agatgtagcc accgttgtat cagcacctcg 4980 aacctatgcc caagataatc atacacaaca ctactttcct cctcaaattc cacaatatct 5040 tgtcccatat ccttaatatc ccatttttag cgcacatcca attgttcccc cttcttatcc 5100 gtaatggcgt gcaccacttc ctcaaaatca tccatcagcc ctacaaaatc accaaaatac 5160 aactagaatt ccttttcgtc ctagaaaaga atacaagaag ggaaatggag ctaaggatga 5220 gttcacccct attggagaat catatgctag cttgtttcaa aaattaagaa cgttgaatgt 5280 tttgagtcct attgaaagaa ggatgtcgaa tcctcctccg agaaatcttg attattccca 5340 acactgcgca tattgttctg atgccccagg gcacaacata gaaagatgct ggtacttgaa 5400 aaaagaaatt caagatttga tcgatactcg tcgaattata gttgaaagcc caaatggacc 5460 gaacatcaat caaaatccac tgcccagaca tactgaaaca aacatcttag atgatgaatg 5520 accacgaaga agttgcagtc ccatacaagc caatccttaa ggatgaaact ggcattgaaa 5580 gttcagcaaa tgtcgttgac ttaacaaaaa tgatgccttc aggggcggaa agtacgtctg 5640 aaaagttgac cccatcaagc gcacccattc taactgtaaa gggagcactt gaagatgttt 5700 gggcaagtca gagagaggca agattggttg ttccaagagg gccagactag cctatcttga 5760 tcgtgcaagg agcctatatt ccacttgtga tcattaggcc agtgtcccac ttccaatgac 5820 taatcccaag gctgtccctt ggaaatatga gcctaccgtc gtgacataca aggggaaaga 5880 aatcaatgaa aaagtagatg aaatagaagg aatgactcgt tcgagaagat gctatgcccc 5940 ggctgaatta aggaaaaata ataatgacca aatgcaagtt aaaagtccag tcactgaaag 6000 ggaggcagag gagttcttaa gaaagatgaa attgtcagac tactccattg tggaacagtt 6060 aaggaaaact ccagcccaaa tctctttgtt gtcattgtta atacattcag atgaacatcg 6120 taaagttgta atgaaaattt tgaacgaagc acatgttcct aatgaaggta caatgagtca 6180 gttagagaag attgctggga gaatctttga ggtaaactgc atcacctttt cagatgatga 6240 actaccagtg gaaggtacgg gacataacca aggcctccat atactgtaaa atgtgagctt 6300 tcatatgtca ctcgagttct aattgacgga gggtctgggg caaatatatt gtccattgtc 6360 aactctacaa aaattgaatg ttaatgttga aagagtacga cctaacaaag tatgtgttag 6420 ggcgtttgat gggtccaaaa cagatgccat tggggagata gagctcatac taaaaatagg 6480 gcctgtcgat ttcaccgtga attttcaagt gctgaatatt aatgcatcct acaatctatt 6540 gttgggaaga ccatgggtac atagggctgg ggcagtcccc tctacgttgc atcaaatggt 6600 taagtttgaa tacgatcgac aagaagtgat tgttcattgt gagagggatc tgtcagtcta 6660 caaggactct tccctccctt ttatcaaggc aaataatgag aatgaggcac tggtttatca 6720 agcttttgag gtagtggttg ttgagcataa cctcgaaggg aatctcattt caaaaccaca 6780 actgcccatg gcatccgtga tgatggtaaa tgaaatgctg aagcatgggt ttaaactagg 6840 taaaggcttg gggattttct tgcaagggag agcttatccg gtgagtccac gaaagagcct 6900 cggtactttt ggcttaggat acaagcccag ggtcgaggac aaaatgaagg ccaagaagca 6960 gaggagagat gtatggtcac ttaccaagcc tataccacct atatacaaat ctttcaacaa 7020 agcccgcaca atagaatctt ctaagtcact actcccagag ccagtgctag aggttcacga 7080 agaattgatc aattattttc aagatttatt tgtcgaggct gatatgattg aactcgaaga 7140 aggcactagc gacagagatg tgcaattcat tggtcctgat gtccagctga acaattggga 7200 ggccactcct ctccccatta agaatgagtc ttggtagtct gtcttgtttt ctttttgtca 7260 tccgatttat tcaagggttg taattcggat tttgtctcgt cgttttattt caaactctct 7320 attttccttt tcaataggat gtaattgtgt ttttatttca gtctaatata tttattttgt 7380 tttcttctat acagttcttt ctatgccgat tctagtgata tgacatgcat ccagaattat 7440 tcaccggatc ttaaaatcca atctaatctt cgacctaatc ctgaaatact gagtcaagaa 7500 atcgaatatg atgaagacga agtatttgaa gaagtaagca gggatttcaa atcttttgag 7560 aataaatcaa acccaaatat gagtgaaact gagacgataa atttagggga tcatgaaaat 7620 attaaagaga ctaagataag cgtacatgct cgacattaaa aggaggataa aattcaggct 7680 ctgcttgatt acaaagatgt ttttgcgtca tcttatgatg acatgcctgg attaagcact 7740 gacatggtgg ttcacaagtt gccgattgat cctaagttcc ctccagtaaa gaaaaagttg 7800 agaaagctta aaactgacat gagtgtaata attaaagagg aaatcacaaa gcaacttgag 7860 gccaaagtca ttcgagtcgc tcaatatcct tcttggttag ccaacatcgt acctgtccct 7920 aagaaagacg gcaaagttcg aatgtgtgtt gattgtcgtg atttgaacaa agcaagtcca 7980 aaagatgact ttcctttgcc caacagccat attttgttgg acaattgtgc tgaacatgag 8040 attgcatctt ttgtggattg ctatgcgggt tatcatcaga ttattatgga tgatgaagac 8100 gcagaaaaaa tgtcttttat cacaccatgg ggtacatatt gttatcgagt catgccattt 8160 ggattaaaaa atgcaggagc aacttatatg agggcaatga caaccatgtt tcatgatatg 8220 atgcataaag aaatcgaagt ttatgtggat gatgtgatca ttaaatcaaa aaaacagtca 8280 aatcatgtgc aagacttaag aagattcttt gaaaggcttc gcaggtataa tctcaagctt 8340 aatcctgcaa aatgtgtatt tggagtactg tcaggagagc ttttggggtt tataggtagt 8400 cgacgaggta tcgagttaga tcctttaaaa ataaaagcca ttcatgaact gccacctcca 8460 aagaataaaa ctgaggttat gagctttcta ggaaggttaa actacatcag tagattcatt 8520 gctcaactca caacaacttg cgagcccatt tttaagttgt taaaaaagaa tgccacagtc 8580 gagtggaccg aagaatgtcg agaggctttt gaaaggatta aaaattactt attgaatccc 8640 cctgtgttgg ttcctcccga gccaggcaga ccgttgatat tatatatgtc agtactggat 8700 aattcttttg gatgtgtatt gggtcagcat gatggcactg ggaagaaaga gcatgccatt 8760 tattacctca gcaagaaatt taccgtttat gaatcgaagt acacccttct cgaaagaacg 8820 tgttgtgccc taacttgggt agcacagaag ttgaagcact atctttcatc ttatactact 8880 tatctcattt ctcgtatgga tccgttaaaa tatatttttc aaaagcccat gcccacgggc 8940 aggcttgcga aatggcaaat attactcaca gagtttgaca ttatctatgt gacgcggact 9000 gcaatgaagg ctcaagcctt ggcagatcat ttggcagaga accctattga tgatgaatat 9060 gaaccactta agacctactt tccagacgaa gaggtatcat gtatcgatga agttattcat 9120 aataaggatc aaggatggaa gttgttcttt gacggtgctg ctaacaagaa gggagttggg 9180 atatgactag ttcttatgtc tgaatcaggg gaatatttcc ctataacagc ccaacttaga 9240 ttctattgta ccaataatat gtcagagtat gaggcttgta tcttgggttt gaggttagct 9300 gctgacatgg gcatccaaaa gttgctagtg ctaggagact cagacttact ggtccatcaa 9360 atccaaggag aatgggagac tcgtgaccca aagctcatac catatcaaca ttgtttacaa 9420 gatctttgtc aacagtttgt gtcaataaag tttagacaca ttcctagagt tcataatgag 9480 attgttgatg cattggcaac tttatcttcg atgcttcaac atcctgacga agctcatatc 9540 gaccctttgt acatacagat tcgtgatcag aatgcttatt gcaacttggt ggaggaagaa 9600 tttgacggta aaccttggtt ccatgatatt aaaacatatc ttcagtccgg agaatgtcct 9660 actaatgcca ctagtaatca aaaaagaact attcggcgac tagatagcgg ttttttctta 9720 agcggaggca tattgtacaa gaaaacacct gatttgggtc ttctaagatg tgtaaatgct 9780 aaagaggctt caacaatcat gattgaagta cactcaggaa tttgtggacc tcacatgaat 9840 ggatatgttc tggcaaagaa gatacttcga gcaggttatt attggctcac catggagcgg 9900 gattctatac ggtttgttcg taaatgtcat aaatgtcaaa tacacggtga tttgatacat 9960 tctcctccct ccgagttaca tgcgatgtct gctctatggc ctttcgtgga tggggaatgg 10020 atgtgattgg accaatagaa ccaaaagcat cgaatggtca taggttcatc ctggtggcca 10080 ttgagtactt tacaaagtgg gtggaagcag taactttcaa gtcagtgacc aagaaggtcg 10140 tggtggattt cattcatttc aacatcatct gtcgatttgg tattccaaag gcaattgtta 10200 ccgataatgc tgtaaatctc aacagtcact taatgcaaga ggtatgccgt caatttaaga 10260 ttgaacatcg aaattcgact ccttatcgcc caaaagaaaa tggggctgta gaagctgcca 10320 acaaaaatat taaaagatac ttcgtatatg ggactgaggc agttttacct gcagaggttg 10380 agattccatc cctgcggatt gttgtagagg ctggaattga tgacgatgag tgggttagaa 10440 catgcttgaa gcaattaagt ttgattgatg agaagcgaat gacatcagta tgccatggac 10500 aattgtacca gaaaagaatg gcacaagcat acaacaaaaa ggtgcgtccc agacgtttcg 10560 aagagggtca attagtgttg aggcgtattc tgccacacca ggctgaagtc aaaggcaaat 10620 tttctccaaa ttggaaagga ccattcattg taaagaaggt attatccaat ggtgctcttt 10680 acttagcaga tatagaaggc aaaatgacag aaatggtcat caatgctgat gctgtgaaga 10740 gatattatat atgatgtgat ttttcggttt tagaaaccct tatgtttgga cttgacattt 10800 caaaggttga tgtaatggaa attcttggtt ctgtgtctaa gtattaattc atatgttgtc 10860 acccttgttg agagctaatt tacttccttg gttcttctgc tttcttggct cttccaaaaa 10920 aaaaaaaatt aataataaaa taaaataaaa aatcaatcat tatgaactac gtttgacctg 10980 attcttgttt cgataagata cgtaggcaac cctattatgg ggttcggtct aaccaaataa 11040 aaaatccaaa atttcatatt tgtaaaaaac taggggcaaa agtcattttt ttttattatt 11100 tttttttcct atcccaaagc taaagtcaat cccattattt aaagtcgtat ttgagccttc 11160 accttgtcat ttctttctaa ccttgtataa aagttgtgtt tcaatcaaag aaagaccttt 11220 ggatcaatct ttgaaatgtc aagagtaagt atgttaaggg tacaaatgat gaaaccatga 11280 gagagtctta ttagtgaaaa cactaattgg gcatcataag acgaatgtga gttgagagaa 11340 acaaaaatga gagagtctta ttggtgaaaa ccctaactcg gcatcataag ccgaaagtaa 11400 gttgtgaaaa taagaaaaaa taaaataaaa gaatgagaga gttttattgg tgaaaaccct 11460 aattgggcat cataaggcga atgtgagttg agagaaataa aatgagagag ttttattggt 11520 gaaaacccta acgggcatca tgagacgaat gagagttgaa ggattcaaag tgaaagagtt 11580 ttagtgaaaa aaaaaaactc tcgtggacat cataaggcga ataagggttc gaaattagtt 11640 atgactccgt caaatagttg gaactccaca tcaagattag atgatcaata atggtcgatg 11700 aatagattgg atggacaaat cgggtaatca attcaaattg catgtcatga tcagtagagt 11760 cggctacctc actcagataa gtttttcttt ctttctcttt ctaaaagaga gtcttcatcg 11820 aatcattttc tgctattctc gtgtagtata tatctttctt tcacttttca tcgctttgtt 11880 tcatatgtcc ttgagtcaag tttatgtcaa gaaagtaaga aaggatttca agaattgtta 11940 ccaattctaa atttgtacaa tgcaaagcat caggccaatg agttattatc tgtcggcaag 12000 ttttggattc agaagaagtc catgatttga tgaagggtaa acaatgagtg tcatgacata 12060 aaggcatata ttggatttaa gtccctcaaa atgagcaaat ttgggtgaaa atacaatcaa 12120 tcaataacga gcactgggtg tttggaaaaa gtaaagcacg atgagtactg gagcaatcct 12180 cgtcaaaagg cagaaccaca aaccaaccac catattttta aactcacaaa ttttctttgt 12240 tgaagcaggg gcacaagtta tttcgagatc aaagatccaa aaacctagat gttcaattta 12300 gtctatgaag agctaaatgg caacattaca cacgaattat agtccatatt gggtaagtgt 12360 ttgtttgtct tattagtcta tggaacatag tgtagcaagg accctcctga ataatgggac 12420 gtagtgtagc aaggaccctc ctgaataatg ggacatagtg tagcaaggac cctcatgaat 12480 aatgggacgt agtatagcaa ggaccctcct gaataatggg atgtagtgta gcaaggaccc 12540 tcctgaataa tgggacgtag tgtagcaagg accctcctga ataatgggac gtagtgtagc 12600 aaggaccctc atgaataatg ggacgtagta tagcaaggac ccttatgaat aatgggacgt 12660 agtatagcaa ggaccctcct gaataatagg acgtagtata gcaaggaccc tcctgaataa 12720 tgggacgtag tatagcaagg accctcttga ataatgggac gtagtatata acaaggacca 12780 tcatgaacaa tggaacgtag tatagcaagg accctcctga ataatgagac gtagtatagc 12840 aaggaccctc ctgaataatg ggacgtagtg tagcaaggac cctcttgaat aatgggacgt 12900 agtatagcaa ggaccctcat gaataatggg acgtagtata gcaaggaccc ttatgaataa 12960 tgggacgtag tatagcaagg acccttctgg ataataggac tagactaaca taattctgtt 13020 taatcggttc atcatgaaga atggagttgg tgtaaacacg cataagccct ctaaagagta 13080 catcgcgaca aagctcgaat cgttcaaagt ctcgatttaa agctaagcac catcctttat 13140 atctctcaca aatttttctt atattaaact agggcaaaat tttgtgttat tagttttgtt 13200 tgttttaatt tcaggaatct agtgatagaa tggggtcaat ccacatttcc agctcaggat 13260 cttggatgga aaaaagtgta attttcaaga tcaatttcga ttgaagaagc aacagctcat 13320 tctaaaaaaa aaaacacaat caataaccaa gtaccagtaa aaggaaccta cttggagaaa 13380 gacgtttacc tttgaactca tttgagatga aaatcaatat ctcataactc aagaagcgcg 13440 aagactcaag tcatggttca agagaagcta catagatagg gtcgtgtact tgtatttcca 13500 ttaaattttt cgtcttttat attcatgtaa caataggagt cgcgaactag agcctcaagg 13560 ggacctcact tgacttccaa ctcatcattt catctccttg aactacacgt gacctgattc 13620 tcttataacc cgggatatgt aggatgtcca aaactaggac tcagtcgcat atttttcttt 13680 ttggataaga gttcgatcaa aacttgtcac gttgtctact tctttgtcta aaaactcttt 13740 gtgtttccag tcaaagaggg gcaaact 13767 // ID TDC1 repbase; DNA; DCOT; 5251 BP. XX AC AB001569; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 28-AUG-1998 (Rel. 3.07, Last updated, Version 1) XX DE DNA transposon TDC1. XX KW DNA transposon; Transposable Element; TDC1. XX OS Daucus carota OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; campanulids; Apiales; Apiaceae; Apioideae; Scandiceae; OC Daucinae; Daucus. XX RN [1] RP 1-5251 RA Ozeki Y., Davies E., Takeda J.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (04-MAR-1997). Yoshihiro RL Ozeki, Tokyo University of Agriculture and Technology, Department RL of Biotechnology; 2-24-16 Naka-cho, Koganei, Tokyo 184, Japan RL (E-mail:ozeky@cc.tuat.ac.jp, Tel:423-88-7239, Fax:423-88-7239). XX DR GenBank; AB001569; Positions 5254 4. XX SQ Sequence 5251 BP; 1662 A; 838 C; 1046 G; 1705 T; 0 other; cactacaaga aaacgcgaat ctgccaacca aatttaccaa cggaatcgtt ttggttgcag 60 tttcccaacg gaatgctgac tgattagtag gcaggccacg gtcaaacact caacaacgga 120 ataccaaccg ttccccaacc aataattaac aacggaagat tccgttggga aatgttggcg 180 ccaaaatcac ccgctgctcg gcaatgacag aattacttac gaattgccaa cgaaaatttt 240 agcaacggaa taccaacgga gtttttacgg attaccaacg gatattctgt tggtaatgtg 300 gtagtacatt cgtcattaat tcatttggta attccgttgc taatcggtca gtaaatgggg 360 gtgactttta caaaatagag gcgttggtaa ttcgttggta ttttagatcg gtcacctttt 420 cttaccgttg ggaatcggtt ggtaaaatag atcggtcaac tcgatatccg ttggtaaacc 480 gttggtatct tgaacatatt taatacattg gcagacagtt ggtactatta ttcagtcact 540 ttttcatccg ttggcaatcg gttggtaaac tagatcggtc agctcaactt ccgttggtaa 600 accgtcggta aagatcaacg gtcatttttc cgttggtaat ccgtcagtat ccaaaacata 660 ttaaataata tattggcaga cagatgataa tttaactcag tcaccttttt aaccgttggc 720 aatcggttgg taaaggagat cggtcaactc gatatccgtt ggtaaaccgt tggtaaggta 780 cagctgtcat attttccgtt ggtaatccgt cagtattcaa acatattaaa aagattgaca 840 gacagtttct tctttctttc tacgttttct aaacttatat cctctcattt tctctcctca 900 tagcaactga aaatagctaa aatcatctca atttttccca tttggatcga agctatttac 960 aagaaggtta gttattcttc atgtacattc taatatttat tcgttattat aatataaatt 1020 atttatgttg ataatctttt agtgttgtga agaattaaaa caatattcat gtttgatagt 1080 attttataaa aaatttataa ttgaccatgt atatatgtgt tgataatgtg atagtctaat 1140 tagtggttaa ttagatataa tttttagcaa ttatgcacta cattatgtgt aataagattt 1200 aacaaataca taaatctaaa catgatgttt gaaaacaata tagttctagt tatattaaca 1260 tgtgttagtt attgatttgg aagaatcatt tatattgact tgatatattt cactaaataa 1320 attttagtta aaatattgtt gttactgaat ttttatgtag gtggtcttga aacatgaata 1380 ataaccgatc ttggatgtac gaaaggacgg atgagagtgg tttcttgaat tctctattta 1440 tttctggagt ggaagaattc atgaatcatg ttatatctca gccaacgtct atgaatggta 1500 cgagtataca atgtccgtgc acaaagtgta agaatcggaa attttggaat tcagatatcg 1560 tgaagctaca tttgttgaag aatggatttg tgagagatta ttatatatgg agtcgacacg 1620 gagagtcata catttttaat gggaacgaag accaatcttc agcaaactat tcaaatgttg 1680 cacgtggcac agatgggaac aatttaatgt acaatatggt gattgatgca ggcggtccta 1740 gttttgatcc acatcgttca gaagagatgc cgaacgcaga agcacaaaat atatacaaca 1800 tgctaaattc ttcggaacga gagctatatg atggttgtga aacatcacag ttggctgcca 1860 tggctcaaat gttgagtctg aaatctgatc atcactggtc ggaggcatgc tatgatcaga 1920 catcacaatt catcaaaggc atcttgccta aagataatac atttctcgat agtttctatg 1980 gaacaaagaa acatatggaa ggactgggcc taccttccat tcatatcgat tgttgtgtta 2040 atgggtgcat gatatattgg aacgaagaca ttgacatgga gtcatgcaaa ttttgttcta 2100 aaccgagata taagatcaga gttaacagat ctacaagaga gagaaagaaa gtggctgttc 2160 aaaggatgat atattttcca ttggccccga gattacaaag gttatatgcc tcaccgacga 2220 ctgcagctca tatgagatgg catgctgatc attacaaaga agatggtgta atgcatcatt 2280 gttcagattc aggggagtgg aggcaatttg atagagcaca tccattattt tcctcggagg 2340 tcagaaatgt gagacttgga ctttctgctg acggatttca gccatttggt agttcaggca 2400 agcaatattc ttcttggcca attatagtga ctccatataa tttacccccc tggatgtgtt 2460 caaaagaaga gtacatgttt ctatccatac ttgtgcctgg cccgaggaat ccaaagcaga 2520 agatagatgt ttttcttcag ccattgattt ccgagttaaa aatgttatgg gaggttggtg 2580 ttgagacatg ggatacttcc ttaaagcaga attttcaaat gcgagctgca ttgatgtgga 2640 ctataagtga ttttcctgct tattcaatgt tatcaggatg gaaaactgct ggtcatttag 2700 cttgtcctca ttgtgctcat gaacatgatg cttataatct caaacatgga ggaaagccaa 2760 catggttcga taatcatcgg aagtttttgc ctgcaaatca tccatttcga aagaataaaa 2820 actggtttac caaggggaag gtcgtgtctg aatttcctcc acctattcgg acaggtgaag 2880 atgtcttaca agaaattgag tcacttggtt tcctccacct attccaactt ttgtagtgat 2940 gctcggaaaa aatgggaagc tggtgaagtg gacaatagag tagccatgca tgtatggcta 3000 ccttgggttg agttttggaa aactccagat ttccagacta aatcaaaaac tcaaaagaaa 3060 aatcgtcgtg gtgggacgga ccactaccct ccaactcaca caggtggttc agcatcctta 3120 agaactcatg ctgctgtcct ggtaagagct tgaacttaac taatctaatt tattttgtta 3180 ttctttattg attgtttggt tttggtttaa tgctttttat tgtaatgact attatatgga 3240 cagcctgtga tagaggataa tcgactaaga taattttgtt tgaaattcat atgatttaat 3300 tattctgaat gaagtaatat accatgcggt tttgaaatcc attgaggctc tggttcttcc 3360 ttgagtacat gtttatctat tttgcactaa ttatctttgc gcgttcgtca gaaagaatga 3420 ttagcctgaa tttatcaaac atttccgctg caaatagata aacactgagc tattaggaat 3480 aatcaagttt aatactacta tattacagaa catgtaattg tttgttgtgc taggctgtgg 3540 tgcacgggca aatgtataaa tgccaattat actatttaca acttgttgaa agcagcttga 3600 tagtgatttt ggcaggataa caaatgagat tcacttggcc tttagaatct tagaattttt 3660 attgtcaaat gattattatg aacattttgt tttaattttt atatggaata acattgtaga 3720 gaacctttaa aagatcgcac tcctgttgtt gcagtgtact taaattaata tatggatatc 3780 tgaaaaatat gaacagaaaa ctggcagata atagttttct ggtgaagtaa tatatactgt 3840 aatgagcttt gttgctggct tggcttggaa tttacctgtg atcagaaatg caggacatac 3900 tagtatgtgt ttttttaact tgtaaattaa atttaatttc aggcggagac taatggtaaa 3960 gatccaactc cggccgatgt gtatttgctt acacatacta agaaacgtga caaaaagacc 4020 tttgttacta agaaagcgga agcagtatat gtaagtagta ttccgaaata ttgcaattgc 4080 gagtgctgta ggagttttaa tatttttatt gtcgttattg ttgcacaaaa attaattggt 4140 atgatgtgtt ttcgttattt tacagaataa ggttattgaa attcgtgagg aacgctctaa 4200 acctattgaa ggttctgatg aacctcagat tgttgatgaa gacgaaatat tcttggaggc 4260 agttggaggg ctggacaaaa gaaatagaat atatggcttg ggttctttgc aaagcgtcat 4320 atatgggcca gaaagcaaga gcagtacatc cacttcccgt tacagtggct ctaacttcaa 4380 taaagaatat gagctaatgc aggttgagct ccaagaaatg aaggaacagg taaaggagtt 4440 acaggagacg agagataagg aacttgaaga tatgagaaac caaatggaag agatgaagag 4500 ccaacttgct ttggtattta aaaatcagaa cacaagttag gcaagttcat cagtacaaaa 4560 gacaatagca agctcctgct tttatatatt ctgctatata ttttgtacca acttaatgaa 4620 tggtatttgt gaatatttgg atacttgtga tcaggtactt tatttctaat caaagttagt 4680 ctttcttttg attctacaag tatttgttaa taatataatg tagtgtataa tgtagtatta 4740 gctaaaaaaa ctatatgtat ccaaaaaaag ttattgctta attttcccaa tcatttcact 4800 aataaaaaat gtattataaa atattaattt ttaacattcc ctacgaattt gcaaccaaat 4860 ataaaagcaa aacatgtaaa tttttccgtt ggtaaattac caagttacca accaaaagat 4920 ggttgctagt tgtggttgca atattagcaa cagagtagaa tccgttggca atctgttggc 4980 aaattaccaa cggaaattct gttggcaaat tagcaaccga aaatccgttg gcatattggg 5040 catctcagca aagtcaacac accaattttc cgttgataat ccgttgcaaa agtaccaacg 5100 gaaagtatat ttccgttggt aatagtttac caaccatgat tttactaaca gtttattccg 5160 ttggtaattc cgttggtacc tcgttttagc aacgggaatt tgtgtttacc aacggaaaat 5220 tccgttggga atctcgcgtt ttcttgtagt g 5251 // ID TOTO1_LP_LTR repbase; DNA; DCOT; 456 BP. XX AC AF220602; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Lycopersicon pimpinellifolium retrotransposon TOTO1_LP_LTR, long DE terminal repeat. XX KW Long terminal repeat; retrotransposon; TOTO1_LP_LTR. XX OS Solanum pimpinellifolium OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-456 RA Lavelle T.D., Oldroyd E.G., Dalhbeck D., Staskawicz J.B., RA Michelmore W.R.; RT "Direct Submission."; RL Direct Submission to Genbank (04-JAN-2000). XX DR Genbank; AF220602; Positions 37402 37857. XX SQ Sequence 456 BP; 188 A; 93 C; 75 G; 100 T; 0 other; tgttaggacc gaaaataagc aggtgtaaac gcggaagcta gcaaagcaaa cctcaaaaga 60 ccacgagtaa gaagacaacg agaaatatac caaaagacac aaagatttaa cgtggttcga 120 tctatcgacc tacgtctaca aaggagatga gcaatccatt ataaatatga gagtacaaaa 180 tacaaagaga aacaatctca actaattctc tcagaataca tgggaggttc acacaagtga 240 taacgtatca agcttgtgac ccataaattc tcccctaaac aaaactctca aagcccttaa 300 gactacattg tgaatgctga ttaagttcga aggaacatac ctctatttat agagtcctaa 360 accttttcct acgagaaaag gattagtcaa tccaaaacct tttcctaaaa gaaaaaccta 420 tttatggtaa gaaatcaggg caaataaaac ccaaca 456 // ID TOPIE1_LE_I repbase; DNA; DCOT; 3201 BP. XX AC AF220603; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Lycopersicon esculentum retrotransposon TOPIE1_LE_I, internal DE region. XX KW LTR Retrotransposon; Transposable Element; internal region; KW TOPIE1_LE_I. XX OS Solanum lycopersicum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; OC Solanum; Lycopersicon. XX RN [1] RP 1-3201 RA Lavelle T.D., Oldroyd E.G., Dalhbeck D., Staskawicz J.B., RA Michelmore W.R.; RT "Direct submission."; RL Direct Submission to Genbank (04-JAN-2000). XX DR Genbank; AF220603; Positions 54681 57881. XX SQ Sequence 3201 BP; 979 A; 619 C; 439 G; 1163 T; 1 other; aaaatttccc ctttttgatg atgacaaacc tcttttcttt gtgcattcaa acagttttat 60 ttgtagacac tgaagcataa aatactaaca tgaaacaagt tagtcgatgg attataaaca 120 ctgcacaact cttatcttcc cccttttggc atcattgaaa agttatgtca atcctataat 180 atacaagcta gattgatcag ttaaacaatt catgctcact gactatcacc aagacaatca 240 gataacgact tcatgcaaca taataatgta ttatagagag caagaacatg agtcattaaa 300 gcaatcaata attaatccat caaactacca gataatgttt tatataagat caaagtcata 360 ctgaatgaag caaaaacgac tgagcactaa taaaaaaaac aaatagttga catgagtaga 420 aaaaaacata gggactaaca ttggaagtga agcaaataat ggaacaagtg gagatagtag 480 tgtcaacaat ctttatcaag aacaatcttt agagcttaaa gtcatatctg attttttttc 540 cataagcaat atgaccaacc tccagtaaaa caatcttatt agtgaaatta ttacttcaac 600 cttttcattg gagtagcagt tttcctcatt gacgcatata ggtcaacatg gttcatctac 660 tcaataattt tttttctata tttgtttttt gaaaaaccat gcatgaattg gaattgagtg 720 ttcctcaaaa cttacaatgg aaatcatgtt atctttgttt ttttcatgct agctctaaga 780 taatggcatc ttgttgacac ttttgatttc tagatgagag ttcaaggtgg aatagagaaa 840 aaaatgtgtt ttaggagttg attcttcctg ataactgaaa ttgagaaact gtcttcttta 900 agcttgcaaa aataatacaa gaagacaaag tgagagagaa caatttgaaa gaatgagact 960 cttgcacttg gacggttaat ttttttctat attagagcaa ttaatacatg anacatgagt 1020 cctcaacttt ttcactttat acaatattaa cctccatcaa tatataacat acctgataag 1080 agcaattttg tgaccatcat tacttgtttt taccatttct ctgcacaatc taatacaaaa 1140 ttagattaaa ataagtaaaa gatctgaagt tgggacacac aactgaatgt gtaagactta 1200 attgaataac attttagctc ataaagttag gagaataatt attctagcca atcattcagg 1260 ggagttcatg caatctcaat catccccaag tctaacttat tcttttcata atgctcctta 1320 cttagtgtca caattcatca attgtcgttt gaaaaagaac aaggtgagcc aacaagcaca 1380 aacttttgta gtcaaatcag ttttaagatt cattgttccc cctataaata tgtccttagt 1440 ttgttcaaca aatgaaatat gtggtacaac gtgtttcaat tcactcttat cagtttcact 1500 ttaatcctca ccttgttttt gcttccccct tacacatgca ttacctcctt ttttttcttt 1560 ttttttaaat gacacattcc cccttttgcg aagtgagcga aagtaacttt tatttatctt 1620 catttatatc tcttacgcaa gcaatattta tgaatttcat cacttgcttc ctttctactt 1680 cacctgcaaa ataacttaga ggttagtctt aggaacccac acaagcttgg gtcctttctt 1740 atgatcaaaa gggtgaatca aatttcttca gttacactca tttttacttt tccttattca 1800 gtaattttca tccttaaaat ttcagacttt agatctaggt tagatgactc aagtttttca 1860 acatgtttct tcagacaatt attttgttta tcagttacaa ttttgtcatc tttgagatcc 1920 atgtactcaa attttttatc tgcaaaggct ttaaacaact tatctctttc acatgttaat 1980 tcttcaaggt catcaattaa cctatttatt aatccaatta atctactttt agaaaatgag 2040 tgcagttttt ctttaacatc agtgatacta acctcagaat tttcatcatc tttagcgtct 2100 gaatcgccca gagctaagaa tgttgtttca tcaatttcat catcagattc tccatctctt 2160 gaaccccaag aagctaccat tgcatattcc tcctttttct ttgaattcct ttccttttcc 2220 atcctttctt tcctccaatt agcttcccat tgcgggcagt tcttaacatg atgacccatt 2280 ttttcacact tgtagcatcc attttgagat ttatcattta tccacttctt ttgattggtt 2340 ttcttctttt cattttcctt ctccttcctg agatacttct tatatccttt tgctagaagt 2400 gacattttat cctcatcata ctcaatatct tcaccatcag acacttttag ggctaatgct 2460 ttttcgctaa gcatttcccc cttctttaag tcatccatat tcatctcata agttctgaga 2520 ttttccacaa gttgatcaaa tgtcatgatg agatgtcttt agcttctctt atggcagtta 2580 cttttacatc tcatttgttt ttaggaagga tccttagaac cttgtcaaca tgttcttcag 2640 tagtgaggat ttttcccagt gatgacaact cgtttaccaa cttagtgagt ctagtaatca 2700 tttttgacat aggctcacct taatcatttt gaatgtttca tattcagtga atagcatgtc 2760 tactatgaat ttccacactt gacttgttcc ttcataagca tcaaccaatg catcccagat 2820 ttgtttagca gtagtatagt ttgaaattct gttgtactca tctggtccaa gaccacaaac 2880 aagaatgttt ttgttcttag catttttcct gagagctgat aaatcttccg tggtgaagtc 2940 aatcttaacc ttttgtaatt taagtccttc gacaatcttc attgcaatag tgggtcctat 3000 atttatccta tccataattc ataatattct gcttgaataa atcctccatg tgtgctttcc 3060 actagccaaa gtgagaccca ttgaacattg ggagtctaac agtttactgt ctttcgctgt 3120 gaccaatagg tggtacagaa ttcatctcga tcttttatct taggtgttaa cctgtaaaag 3180 acaacctggt ttgataccaa t 3201 // ID Ogre-VP1_I repbase; DNA; DCOT; 12174 BP. XX AC AY936172; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; gag-pol; Ty3/gypsy-like; LTRs; intron; KW plant retrotransposon; Ogre superfamily; Ogre-VP1; Ogre-VP1_I. XX OS Vicia pannonica OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Fabeae; Vicia. XX RN [1] RP 1-12174 RA Neumann P., Koblizkova A., Navratilova A., Macas J.; RT "Significant expansion of Vicia pannonica genome size mediated by RT amplification of a single type of giant retroelement."; RL Genetics 173(2), 1047-1056 (2006). XX RN [2] RP 1-12174 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AY936172; Positions 19102 6929. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC In Vicia pannonica, Ogre elements occur at very high copy CC numbers (100,000/1C), making up about 38% of the genome. CC Additional annotation: 7057..7373: putative intron; CC 10326: frameshift mutation (insertion of 1 bp). XX SQ Sequence 12174 BP; 3774 A; 2577 C; 2463 G; 3360 T; 0 other; gaaaaatggc gacttcactg gggactttat tgtttctaaa aagaggatta ggcttatttg 60 tttatctact tggctttttt acgctttctc ttctgaatat aaactgcttg tttggttctg 120 agacatagtc acgcctgaca ttgtgactcg ttttgatgga taaaatccta gacccaagga 180 ttaagaaaca ttttaagatt aggagtttgg tcttaactac ttgtgggggg ttcagtcctc 240 ataaggaaag tctgagatca agcacttcag tggaggtctc ctaaggggta atttttgttc 300 aagcttgttc aattgcgcga acataaatta tttccattag gcctgcgaag ctgagggact 360 ttttagaaca taagggtgat ggtttctcgg tgaaatccac tctttaaccc atctttggcc 420 ttttgttagg gtggtgcaga gacttttaaa gttgtcatgc gagaccgcac ccagccgagt 480 ttttcctgag aataatatta tcgcacaagt tcaattgtgt aaagactata ttatgcgatg 540 gaagaatgta gactctgtgg taccagtaga acatgctcta caggttttta cccctagaac 600 ttaaacaacg gttactgtcc ttttgacctc atgctcgtga tgttgaagaa atgaacccat 660 cttgtttgaa acccatgttt tattgtatgt actcgttccc cacctctgac ctcatgctcg 720 tgacgtcgtt ttgttgaacc gccctcgcgt gaaattttgc ttggagtcgt tatgctgtcc 780 gcgtaacctt gcattcataa gcatacataa aacatactta aaatctttct cctaaaaatt 840 tcaaggaatt tagaaaattt tctttgcgaa ctgtccatag gttaggatca tggatctggg 900 aagaagaaac accaagcgat acgactttag gatacctgaa gtaggagggc tacaagagct 960 agcatctttg gtaaagaaac ctgttgactt tagaaagcgc tatggaaagc tcttgtctat 1020 tcttaacacc agtgtcaaca taggacttct taagactttt atacagtttt acgatcctgt 1080 ctaccactgt tttacctttc ctgattatct gttggtacca actttggacg aatacgccaa 1140 tcttttgggt attcaagtga cagatggggt acctttcaat ggtttggaag ccatcccgaa 1200 atctcgtctc attgcaacca tcactcattt agaaaagtct gaaatagaca acaacctaac 1260 cgtaaaagga aataccttag gtttagagtc agactttttg atgaaaaaag cttttaagtt 1320 tgccaagtct ggtaattcgg aagcctttga ggctattttg gctttactca tctatggatt 1380 ggttttgttt cccaacatca aaggatttgt tgacgtctca gccataagga tctttttgat 1440 tggaaacccc gttcccactt tgctaggaga tatctatttc tccgttcatc ttaggaaccg 1500 tcaaggcggt ggagtcatcg tatgttgtgc acctctgttt tacaaatgga ttatctccca 1560 cttacctaag tctcctatct tcaaggaaaa cccaaatggt tggaattggt ctcgaagact 1620 catgtcctta acccacaatg acatccattg gtatactctg atttacgatg gcttggaaac 1680 cattgaaagc tgtggagagt tctctaacat acccctcatt ggaacccaag gaggtatcag 1740 ctacaatcca atcttggcaa gacgtcaact tggacttcct catcaaaaac ccgttggtct 1800 tacagtagaa agttactttt accaagaagg gattgatcct catggattaa aagctaggat 1860 ggtaagagcc tggcaccaca tccaaagaag agaagggggt agagcaagaa attgtgtagc 1920 tttggagctc tacacttctt gggtagaaca aagagcaagg gatctgcaaa tgccttacgc 1980 ttacgaagca ccctctttac cagcaatacc agattggcct gatgtccccg ttgagactat 2040 ggaggaatat caagaaactt tatcctatat tgctcaagaa aaggatcttt gggaggataa 2100 gtttcacaag accgtttctg aaaacaggaa gttaaagaaa caggtagagg agcatgatca 2160 gatgctttac ttccaagatg actggctcat ggaaaaggat gagaaaattc gtcgaaagga 2220 tgctgccatc agaaaatacc ttaaggaaag aagggagatg ttcaatggat caaccagtac 2280 tactcccgac cttgattgga aaagtgaggt taacaaactc gaggctgaga aagccgagat 2340 gaaagcctac tacgagaaag aaatcatgaa gcacaagcgt cacaagtctg ttgattgctc 2400 gtcaaatgaa gatgcttagt ttagcatagt ttagttttta tcgctttcat ggtgtaagag 2460 ctactatcaa ccgttgtaac tttatttcag tattaataaa gtttggaatt tttattccat 2520 ttgtttgcaa gaatcttttc tttaggaaat tccttgaaat ttttcttaac tattaaaaca 2580 ttgcaacatt aaaacatact tcatctccgc tttccgccat agctaagtct aatctttgga 2640 attttctcca tagattttca agctgtctca tctcaaagtt tctcgatcgc gttcgcaatc 2700 tactcataga tacgacacta gagcaaagag aaggaaagca atggaagact ttgaacaaga 2760 aaacaacgag cttcgtggta caattaccac acttcaagga gaagtggaaa gactcgccag 2820 tttagtggac gctctgatgg tcgaacaaac tcgatcatcc gctcctcaaa atcaaccaac 2880 agtgattgcc gaagtcactc cagatccgga taatgctgct gcagccagca aaccgctctt 2940 cactatgccc gaaggatacc cttggggcat gccatttcac tttggtgcaa gctctcaacc 3000 caatctaccc aaggttcaaa caaccaggat tgaggttccc gcttcccaaa acccagtgtt 3060 cactccgaga cgtagaggaa catctgtgcc aacttctcag ccaatcatga ctttttcaaa 3120 tccagtagtt catactacga gtgatcaagt ctatcatgat tcgggtgacg acgcaattcc 3180 gtttggttgt atggaagaac tcaaagagca gttcaaagaa atgcaacgag aaatcaaagt 3240 tcttcgtgga gaagatatat atgggaagaa cgcgtacgac ttatgtctag ttcccaacgt 3300 gaaggtacct gttaagttca aagtccccga ctttgagaaa tacaagggta attcatgtcc 3360 acaaagccat ttggtgatgt atgctagaaa gatgtctacg tacaatgaca atcatcaact 3420 gctcattcac tgcttccaag atagtttaac tggtgccgct ctgaggtggt acatgggttt 3480 ggatagcacc agcattcgta ctttcgacga tttaagcaag gcctttcttc gtcagtacaa 3540 gtataacata agcatggctc ctgatcgaga ccaactccga gccatggctc aaaaggaaaa 3600 ggaaactttc aaggagtacg cccaacgatg gagggaaatt gctgcccaaa ttaatcaacc 3660 gatggaggat aaagagatga ctaagatctt tcttaacact ctcagttcat tctactacga 3720 gcgaatggtt gctagcgctc caaacgattt taccgaaatg gtaaatatgg ggatgcgtct 3780 agaggatgga gtccgaatgg gacgtctaac aaaagaaagt ggatcttcaa gtgggactaa 3840 aaagtatgga actgcttttc ccaagaagaa agaacaagat gttggcatga tatcccaagg 3900 taacccaaga gggaatcaac gacaacatgt ggctgctatt gcaccagcat ctaatcccgc 3960 accgaacgtg aggattactc cacaaattca acagaatcaa cagcctcagc agcaggctca 4020 gccattcaat aacaatcaga atcgtgcgcc aaggatttta cagtttgatc caatcccgat 4080 ctcatacact gaattatatc ctgccttgat tagggaaaat gctattcaaa cgaaagcacc 4140 gccgcccgtt cctgcaaagc taccatggtg gtacaaagcg gacgtatctt gtccttttca 4200 tcaaggggca cctggccacg atctcgaaca ttgcatagcc ttgaaatctg aagttcagaa 4260 gttagtaaga gctaacattc tctcgttcaa ggactcggct ccgaacgtac aagcaaatcc 4320 attaccgaat catggaggaa ataccgtaaa catggtatat ggatgtcctg gagaattcag 4380 gatcttcgac ataaattggt caaaagcaaa tttggtggag tttcatatta cttgttgcag 4440 aggcaatagt aatttcagac cacatcttta tcagcgctgt cctaatggtt gtaggaacag 4500 tattcgtgga tgtgccatca taagaagaga tctccaacga ttgttggatg aagatgttat 4560 tcgaatctat cgaccgagga atcaaggtca tattgaccta ggcaacgtca actcaatttg 4620 tgaatgtact gacctctacc agatctttga tatcaactta tcaaatgaaa acttggtaca 4680 aattcacact gctttttgcg caatgatagg cgtcactcag catgactatg tctcctgtga 4740 aatctgtcac aacaatcctc gaggatgctc taatgtcaga aaagacctcc aatcgttatt 4800 agacgatgat gtcattcaag tttacaaaaa cagaaatgag cataatgtta acatgttggg 4860 tagtcatccg catgagcttg tctcagatat caactcggtg actcccgaag ttaatgttat 4920 cactccctgt tttaacatgc ccaagcgcat agacatgaca tacaaaccaa gaaaagcagt 4980 tgctcctttg gtcatttgtc tacctggacc aattccttat aagtcagata aggcagttcc 5040 ttacaaatac agtgcgacta tgatgaagga tgggcaagaa attcccttac cgactcttcc 5100 atctacagtt aacattgccg aaatcagtcg tgtaactaga agtggacgcg tgtatacacc 5160 gttgccacca aaagtgcccg ttgttaggca aaatcctttg gctacgccag cttcaaatcc 5220 tgcagtgatt cctattggaa atccgaatcc caactgcgac gttggacagt ccagtggaac 5280 caatgtcaac cctgactttg aggaaatctt gaagttaatc aagaaaagtg aatacaaaat 5340 tgtggaccag ttaatgcaaa ctccgtccaa gatctccata ctttctctgc ttctaaactc 5400 tgaagctcac cgagaggctt taatgaaagt tttggatcaa gcttttgtag atcacgacgt 5460 aactgtcaac cagtttgatg ggatagtatc caacataaca gcttgtaaca gtctatgttt 5520 ctatgatgag gaactcccta aagagggaaa ggatcataac tttgctcttc atatctctat 5580 gaattgccaa tcagactcct tatccaatgt gttggtagac acaggatctt cactcaatgt 5640 gatgccaaag acaactcttg accgtctgtc atacaaaggg gctcctttga aattcagtgg 5700 agtggtcgtc aaagcctttg atggatcacg taaatcagtt ataggagaag ttgaccttcc 5760 aatgactatt ggtccgcata ctttcctaat caccttccag gttatggaca ttcaagctgc 5820 ctacagctgt ttgttaggtc gaccatggat tcacgaagca agagcagtaa catctactct 5880 tcaccaaaag ctgaaattca taatagaggg aaagctgata accataagcg gagaacaagc 5940 cctattggtc aatcacttat ccacgttctc tttcatcgat gccgatgata tggagggaac 6000 tcagttccaa ggacttacat tagaagatga atctacaaag aaagatagag cctctatctc 6060 ttcttatcaa gatgcagtac gagtagttaa cactggtact actgccggtt ggggtcaggt 6120 cattaatcct gtcaacaatg gaaccaaaac aggattggga ttttcctcaa tacctccaaa 6180 atcaagcaaa aaggatgaaa cacttcgtcc gatccaggaa acattctgta gtggtggatt 6240 ccttgatcag gttccccaag aagttaatct cctcagcaag gagatttctt ctgaaaaaga 6300 acattctgat tccgaagaag aatggaaaac ctacctcgac gattctggat atatatctca 6360 agaagaactg tttacaccat ttggtactct ctcagagaag ttcgcagata tgttccaaat 6420 ccgagacaaa gaagttccac ctatccccga tgaaatttgg gataccttgg gacaaccaag 6480 cggcaagttt gattacaagg tcaaatacac tgcccctgaa agttcaaaga tcgcaatcga 6540 agacatccag ccaactggat ggggataccc ctatgaaaca tcagaacagc tagaagttta 6600 cactgactct cagctacctc atccatttga gattacaaat ggagatcttc gcttcaacgc 6660 aataactcag attgaggagc cagaattcat ttatcctcag ataaatgcaa tctttggaga 6720 caattgggaa agcaatctag aagaggactt ggaaagtgtc tccgacaatg actttcttag 6780 tctcgacgac ttagaaacac ctcttgagaa tcccaaatct gtgagcaaac atgcctcacg 6840 atctacttct cgacctgttg agaaagcaga ggaagaccgt cacagcagta ccaaggggaa 6900 gactagtaag tcaagctctt caaaatctgc tcagtcgtca gtcaacgtta tcactaagga 6960 tgattccaag caagtcatgc ctgagttcat cattcacaat ggagttcgtc actattggac 7020 agctgttgaa gtcaagaatg ttgttcatcg ctcaaagtaa tgatctcgct tttgttttga 7080 cctctcgcct agcccgaggc agagtgtttg ttttataggg tttgctttta atttccctca 7140 ttgtctcgcc caaggcaata gagttttgtg tttagggccc tgtttcaaat gtgaatcata 7200 aataaaacgt cattttgaat tccttatatc atgtgttttt atttttctgc ttttttctgg 7260 aaatggtaat cctaaaaaaa aaaaaaacaa ataaaaacaa aacacttttt agcaatctgc 7320 acgcaatatt tcattggtca gtttctaaaa taaaacataa atcatacgtg cagattagtt 7380 gtcaataaat ccattgaaag caataatcgt acgccctctc ccaactttgc gtttcctgtg 7440 tttgaaaccg aagaggatga agaagaggat attccagatg aaatttcccg actgcttaag 7500 caagaggaaa gaatgattca gcctcatgaa gaacctctgg agttgatcaa cttgggttca 7560 gaggagaaca gaaaggaagt gaacattgga gcacttcttg atgctgacgt caagagccaa 7620 ttgattgatc ttctcaaaga atacgtcgat gtgtttgctt ggtcctacca agacatgcca 7680 gggttggata ccaacatcgt caaacatcat ttgcctctaa ggccagaatg tccgccagtt 7740 aagcagaagt tgagaaggac tcaccctgat atggctgaca aaatcaaaaa ggaagttcaa 7800 aagcagctcg acgctggttt tctccttact tctgaatacc cgcaatggct agccaacatt 7860 gtacctgttc caaagaaaga tggaaaggtc agaatgtgtg ttgactaccg tgacttaaac 7920 aaggcatgtc caaaggacga ttttccttta ccgcacattg acacgctggt tgataacacc 7980 gcaaagttca atgtattctc ctttatggac ggtttctccg gttataatca gatcaagatg 8040 gctcctgagg acagggagaa gacatctttt atcacaccat ggggcacctt ttgctaccaa 8100 gtaatgccat ttggattaaa gaacgcaggc gcgacttacc aaagagcaat gactactctc 8160 tttcatgaca tgatgcataa agagatcgaa gtgtatgtgg acgacatgat cgccaagtcc 8220 agcactgaag aagaacattt agaatacctt ttgaagttgt ttcaacgctt aaggaaatat 8280 caactacgct tgaatcctaa caagtgcacc tttggggtga gatcaggaaa actcctagga 8340 ttcattgtca gtcaaagagg tattgaagta gatcctgaca aagtcaaggc tattcaagaa 8400 atgcctgcac caaaaacaga aaagcaagta agaggatttc ttggacgatt gaactacatc 8460 tccagattca tctctcaaat gactgctact tgtgggccga tcttcaaact tctccgcaag 8520 aatcaagggg ttgtatggac agaagactgc cagaaagcgt tcgacagtat caaagaatat 8580 ctgcaagaac caccaatttt ggtccctccg atcgaaggac gaccattaat catgtacctt 8640 accgtgttag aagaatccat gggctgtgtg ctgggacagc acgacgaaac cggtaagaag 8700 gagcatgcaa tctattactt gagtaagaaa ttcacagact gtgagtctcg ttactccatg 8760 ctcgagaaaa cttgttgtgc attggtttgg gcatctaaac gtctccgcca atatctaatc 8820 aaccacacta cttggttgat ctccaaaatg gatccaatca agtatgtatt tgaaaagcct 8880 gccttaacag gaaggattgc ccgatggcag atgctgttat ccgaatacga cattgagtat 8940 cacgctcaaa aagctgtcaa aggaagcatt ctcgccgatc atttggcaca tcaaccaatt 9000 gatgaacatc aatctctcaa gtttgacttt ccagacgagg atgtcatgta cttaaaaatg 9060 aaagattgtg atgaaccatt acccgaagaa ggtcctgatc ctgaatcaag atggggccta 9120 gtcttcgatg gagcagttaa cgcttttgga aacggaattg gggcagtcat tatcactcct 9180 caaggaaccc atattccatt cacagccaga ttactcttcg aatgtactaa caacatcgca 9240 gagtacgaag cttgtatcat gggactcgaa gaagccattg acttaaggat caaaatcctt 9300 gatgtatatg gagattcagc tcttgtgatc aatcagatca aagacacgta tgaaactaac 9360 caccttggtt tgattccata cagagattat gcaagacgtc tgttgacttt cttcaacaaa 9420 gttgaattgc atcacatccc tcgagatcag aatcgaatgg cagacgcctt ggccacttta 9480 tcttccatga tcaaagttaa ccattggaat gatacgccga gtgtcggcat tatgcgcctt 9540 gaaaggccag cttatgtgtt tacagccgaa gtagtcatcg atgataaacc gtggttccac 9600 gacatcaaac gcttccttca aactcaagag tacccgcttg gggcatctcg caaagataag 9660 aaaactctaa ggagactttc tggcaagttc ttcctaaacg gagatgtact ttacaaacga 9720 aactacgaca tggttttgct cagatgcgtg gatagacacg aagcagatct gttaattcat 9780 gaagtacatg aagggtcctt tggaactcat tcaaacgggc atgcaatgtc caagaaaata 9840 ctaagagcag gatactattg gctgacaatg gaagctgatt gctgcaaaca cgtcaagaga 9900 tgtcacaaat gtcagattta ctcagacaag atccatgtgc caccgactct actcaacgta 9960 ctctcttctc cttggccttt ctctatgtgg ggcattgaca tgattggaga aatcaaaccg 10020 aaagcttcaa atggtcatcg tttcatcttg gtagcgattg attatttcac caaatgggtc 10080 gaagcagcat cttacgccaa cgtcacacga caagtggttg caaggtttat caaaaacaac 10140 ctcatctgcc gatacggtat ttcaagtaag atcattacag ataatggatc taacttgaac 10200 aacaacctga tgagggaact gtgtgaggaa ttcaagattg tgcatcacaa ctcttctcct 10260 tacagaccaa aaatgaacgg cgctgttgag gccgccaaca agaacattaa gaagatcgtc 10320 cagaaaaatg gtcatcactt acaaagactg gcatgagatg ttacctttcg ctttgcatgg 10380 ataccgtacc tcagtacgta catcaacagg ggcaacccct ttctccttag tttatggcat 10440 ggaagctgtg ctccccgtag aagttgagat tccctcaatg agagtcatca tggaaactaa 10500 gttatctgag gctgaatggt gtcaaaacag atacgatcag ttgaacttga tcgaagaaaa 10560 acgtatgact gctctctgtc atggacagtt atatcaaacg agaatgaagc aagcatttga 10620 caaaaaggtt cgacctcgag tattcaaaga aggtgacctt gtgcttaaaa agattctgtc 10680 ttttcaacca gacgttaggg gcaaatggtc tcctaattac gaaggaccgt atgttgttaa 10740 gagagctttc tcaggcggtg ctctgactct tacaactatg gatggtgatg aactcactca 10800 caacatcaat gctgatgcag tcaagaaata ctttgtctaa acaagacaaa agaacggctc 10860 ggtaagttga aaacccgaaa agggcgactt aggcaaaaat gagcgtctcg gtggactgaa 10920 aaacctgaaa aggcggtcca ggcaaaaata agagacaata aacagaacaa tattatcctg 10980 gtagattgaa aacctgaaag ggcaatctag gcaaaagtta aggatttatg acaaagtaac 11040 tgcattagtc cgagcttcat cacctgaaga atctccaacg agaaatcttc gaacaaatca 11100 tcgtccaagc aacaaacaca gttggaattc aaagttgtta gggagaatac gattatcgct 11160 ttcagtgtag tcttttccac ttaattacca tttccaaact tttgtaaata ttctatggaa 11220 tcacgctttt ggctgattac catcctataa ataaacttga gctttgtgcc atttatttgc 11280 aattcttaat ttattctgct tttgcaaaat gacgttttgt tcttgataat cattttttga 11340 aacaaaaaaa aaactttttc aaaatgaatt tactttttca aaataaaagc gacacttttc 11400 tttgagcaat gaacgccgaa ggaaacaaca acagctttct cagcgaacgt tcaaatctga 11460 aggatgaaca tatgactgat cttgctctct tcctcgaaag agacttcgac ggtattcttt 11520 tcctcaaaga aaatttgtga ccaagcgtca ccaacaaaaa gaaaatgatt tttttcttcc 11580 ccagagaagt ctgaaacatt caactctgaa tcaactaatg agtgttgcct acacttcatt 11640 aacagacgct tccctcagtg aagtcaaagg ggataaacca gaagcctcat tatccgagca 11700 aaacatccct gttgcatttt gcagtaagag ttaattggac atttttctct tctgttttca 11760 tttgttattc acaaagctga ataatcaatt cctcctaaac attaccttgt tataattatc 11820 actcggctga taattggtaa aagttctagg atcctctctt tatcatcaca aggctgataa 11880 acgataaaga aatcaccatc accttatcac taggctgata acgggataag atatctcatg 11940 atcacctaaa acattgtcac caggctgaca gtatgttgag acatccttac aatttctcct 12000 cggttgtgtt acctctaggt acctctgggc agaaattttt ctcacatcaa cgtgacccgc 12060 atttttggta tcttaggtcc aaaattcgcg tattctgata tttaaatctc tttcttccta 12120 taaagatttt caatctttat ttatcaggtt aaagaaattt aaataggggc atct 12174 // ID Piggy1_MT repbase; DNA; DCOT; 2228 BP. XX AC . XX DT 14-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE A Mariner like non autonomous DNA transposon from Medicago DE truncatula. XX KW DNA transposon; Transposable Element; Nonautonomous; mariner; KW Inverted repeats; Piggy1_MT. XX OS Medicago OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae. XX RN [1] RP 1-2228 RA Shankar R., Jurka J.; RT "Piggy1_MT: A putative non autonomous transposon from Barrel RT Medic."; RL Repbase Reports 6(11), 584-584 (2006). XX DR [1] (Consensus) XX CC The sequence codes of a transposon like peptide sharing CC similarity with a bacterial transposase. Flanked by 2 bp TSD CC (TA). XX FH Key Location/Qualifiers FT CDS 325..543 FT /product="Piggy1_MT_1p" FT /translation="MSLNSSFTFIKFLPFQNPERENKNISFFQISSSLFFH FT IDQFLFLFHSSSHFDCSILSFQIAAISNYRENCRCF" XX SQ Sequence 2228 BP; 816 A; 317 C; 290 G; 805 T; 0 other; ccctctcttg tttagagggt aatttaccct ctcatgatat caaccaatca aaatgtaata 60 tacataggta acattaaatg tcaaataaat gagtagattt tttctaaaaa taaaagagtt 120 aatcttaatt tttttttttt tgaaggagag ttaatcttaa tcataaggta acttttaata 180 cttttaattt ttatttaatt tttttttttg aaacaacaaa tgatttaatt ttttttattt 240 ttatattaag gtgttcaatc ttaattaatt tacactacaa gacttataac aaataaaatt 300 ttacatcaaa tttctttcat ctggatgtcc ttaaattcat catttacatt cataaaattt 360 cttccattcc agaaccccga acgtgagaac aaaaacatct ccttctttca aatttcttct 420 tctttattct tccatattga tcaatttttg tttctttttc attcttcttc ccattttgat 480 tgttcaattt tgtcgttcca aattgccgca atttccaatt atcgtgagaa ttgtcgttgt 540 ttctagaacc gcgtcaggta tcgtgactta ttttttttta tttaagcagc caacctaata 600 aaatctgtta acacgcatag acctgtctca ctatcagcaa aagcctttaa gtccaaacaa 660 aagaacaaaa gcctcatcac ataaccattt cagcagcaac caaaaaaatg ctagcaaact 720 cccacaacat cacagcggca acacctgcta gcagccctca aagtacaacg gatgatttac 780 tcaattgtta taattaacta cctcacaacc aagaaaaatc aaatcaaaaa gaaaaatcaa 840 gtcatcatac ctgacgttgt actggaaata acggcaattc tcacgatatt tgaaatcaaa 900 cgaacgatga cgattctcac gaaaattgaa aaatgcggca gttgggaacg acaaaattga 960 acaatcaaaa tgggaagaag aaattttatg aatataactg ataaatttaa ggacattcag 1020 atgaaagaaa tttgatgtga aattttaatt gttctaagcc agtcctgtag tgtaaattaa 1080 ttaagattga acacctaaat ataattaagg caatattaca ttatgggtcc tttatcttat 1140 ttatttgtaa cactttggtc ctttgtcttt attttttccc gtttaggtcc tttatctctc 1200 ttaaaagcac atatacatct tttttcgcat tttttttatt aaaaaataca taattttatt 1260 tttaaaaata tatttttatt aaaactgaaa aaaaaatcca aaaatatgat gaagatgttc 1320 atcatcttca tcttcttcct ttgaatcttc atcatcttct ttaaataaat aaaaaattct 1380 actaaaatat atctccaaat atcgtgaatt aatgttatat tcacctcaaa tcttctttta 1440 aacacaaaaa tcaaaacctt aatttcacaa atgttgcaag gcggatggtg gaggcttagt 1500 cactggcgga agggttaggc tttacgaaag ttaagattgt tctggaaaca acaaaattga 1560 tgtgcaaagc tgctatcaat tttggggtta tttttatgtc gggcttgaat attgagttag 1620 aaaataataa taataataat aatatacagc gtgacaattt atataactat tttttttttt 1680 tgtgatgaaa ctaaatctct ttctctatag ggttttgatt tttgtgttta aaagaagatt 1740 tgaggtgaat ataacattaa ttcatgatat ttggagatat atttgtgtag aaattttttt 1800 gattcaatga agatgatgaa gattcaaagg aagaagatga agatgatgaa catcttcatc 1860 atatttctgg atttgtttca tttttaataa aaatatattt taaaaaataa aattatgtat 1920 tttttttaat aaaaaaaatg agaaaaatga tgtatatgtg cttttataag agataaaaga 1980 cctaagcgga aaaaaataaa gataaaggac ccaagtgtaa caaataaata agataaagga 2040 tctctaatgt aatcatgtct ataattaaat aaaaattaaa agtattaaaa gttaccttat 2100 gattataatt gattcttttt ttagaaaaaa aattgactca tttatgacat ttaatgttgt 2160 caatgtatat ttacattttg attggttgat atcatgagag ggtaaaatac cctctaaata 2220 agagaggg 2228 // ID SIRE1 repbase; DNA; DCOT; 2389 BP. XX AC U22103; XX DT 11-NOV-1996 (Rel. 2.2, Created) DT 11-NOV-1996 (Rel. 2.2, Last updated, Version 1) XX DE Glycine max partial SIRE-1 sequence gag-protease polyprotein DE mRNA, complete cds and pol protein mRNA, partial cds. XX KW gag; pol; retrovirus-like element; SIRE1. XX OS Glycine max OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; OC Glycine. XX RN [1] RP 1-2389 RA Bi Y., Laten M.H.; RT "Sequence analysis of a cDNA from the soybean retrovirus-like RT element, SIRE-1."; RL Unpublished. XX RN [2] RP 1-2389 RA Laten M.H.; RT "Direct Submission."; RL Direct Submission to Repbase Update (02-MAR-1995)Howard M. Laten, RL Loyola University of Chicago, Biology, 6525 N. Sheridan Rd., RL Chicago, IL 60626, USA. XX DR GenBank; U22103; Positions 1 2389. XX CC SIRE1 (AC U22103) replaces previous, shorter, SIRE1 (AC L06326). XX SQ Sequence 2389 BP; 802 A; 452 C; 587 G; 548 T; 0 other; tccggtccct ggcttggtag cccccagatg taggtgaggt tgcaccgaac tgggttaaca 60 attctcttgt gttagttact tgtttaatct gttcatacag tcaaacataa tctgcatgtt 120 ctgaagcgtg atgtcgtgac atccggtacg acatctgtca ttggtatcag aatttcaatt 180 ggtatcagag caggcactcg aattcactga gtgagatcta gggagataaa ttctgatgaa 240 catggagaaa gaaggaggac cagtgaacag accaccaatt ctggatggaa ccaactatga 300 atactggaaa gcaaggatgg tggccttcct caaatcactg gatagcagaa cctggaaagc 360 tgtcatcaaa gactgggaac atcccaagat gctggacaca gaaggaaagc ccactgatgg 420 attgaagcca gaagaagact ggactaaaga agaagacgaa ttggcacttg gaaactccaa 480 agctttgaat gctctattca atggagttga caagaatatc ttcagactga tcaacacatg 540 cacagtggcc aaggatgcat gggagatcct gaaaaccact catgaaggaa cctccaaagt 600 gaagatgtcc agattgcaac tattggccac aaaattcgaa aatctgaaga tgaaggagga 660 agagtgtatt catgactttc acatgaacat tcttgaaatt gccaatgctt gcactgcctt 720 gggagaaaga atgactgatg aaaagctggt gagaaagatc ctcagatcct tgcctaagag 780 atttgacatg aaagtcactg caatagagga ggcccaagac atttgcaacc tgagagtaga 840 tgaactcatt ggttcccttc aaacctttga gctaggactc tcggatagga ctgaaaagaa 900 gagcaagaat ctggcgttcg tgtccaatga tgaaggagaa gaagatgagt atgacctgga 960 tacagatgaa ggtctgacta atgcagttgt gctccttgga aaacagttca acaaagtgct 1020 gaacagaatg gacaggaggc agaaaccaca tgtccggaac atccctttcg acatcaggaa 1080 aggtagtgaa taccagaaaa ggtcagatga aaagcccagt cacagcaaag gatttcaatg 1140 ccatgggtgt gaaggctatg gacacatcaa agctgaatgt cccactcatc tcaagaagca 1200 gaggaaagga ctttctgtat gtcggtctga tgatacagag agtgaacaag aaagtgattc 1260 tgacagagat gtgaatgcac tcactgggag atttgaatct gctgaagatt caagtgatac 1320 agacagtgaa atcacttttg atgagcttgc tacatcctat agagaactat gcatcaaaag 1380 tgagaagatt cttcagcaag aagcacaact gaagaaggtc attgcaaatc tggaggctga 1440 gaaggaggca catgaagagg agatctctga gcttaaagga gaagttggtt ttctgaactc 1500 taaactggaa aacatgacaa aatcaataaa gatgctgaat aaaggctcag atatgcttga 1560 tgaggtgcta cagcttggga agaatgttgg aaaccagaga ggacttgggt ttaatcataa 1620 atctgctggc agaataacca tgacagaatt tgttcctgcc aaaatcagca ctggagccac 1680 gatgtcacaa catcggtctc gacatcatgg aacgcagcag aaaaagagta aaagaaagaa 1740 gtggaggtgt cactactgtg gcaagtatgg tcacataaag cccttttgct atcatctaca 1800 tggccatcca catcatggaa ctcaaagtag cagcagcaga aggaagatga tgtgggttcc 1860 aaaacacaag attgtcagtc ttgttgttca tacttcactt agagcatcag ctaaggaaga 1920 ttggtaccta gatagcggct gttccagaca catgacagga gtcaaagaat ttctggtgaa 1980 cattgaaccc tgctccacta gctatgtgac atttggagat ggctctaaag gaaagatcac 2040 tggaatggga aagctagtcc atgatggact tcgttatgtc aaggaataag atcgggctgc 2100 acaatgcaca aggcaagata aaatgtcaaa tgaagaattg aagctgcagg atccatgatg 2160 tcggatacaa tgtccaggac atcctgcccg aaaatactgg agttgctgca caatgcacaa 2220 ggcaagataa aagaagtgaa gctgcaggat ccacgatgtc ggatacgatg tccaggacat 2280 ctggcccgaa aatactggac acataaatct gttatatctt taacagatta ttgtgcagtt 2340 agcaacaggt tagacgatct atctttagga acgaactctt ctagttccg 2389 // ID MtPH-M-I-Ia repbase; DNA; DCOT; 5140 BP. XX AC AC144478; XX DT 14-APR-2008 (Rel. 13.04, Created) DT 14-APR-2008 (Rel. 13.04, Last updated, Version 1) XX DE Harbinger-type element (MtMaster). XX KW Harbinger; DNA transposon; Transposable Element; MtPH-M-I-Ia. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-5140 RA Grzebelus D., Lasota S., Gambin T., Kucherov G., Gambin A.; RT "Diversity and structure of PIF/Harbinger-like elements in the RT genome of Medicago truncatula."; RL BMC Genomics 8, 409-422 (2007). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(1086..1520,1524..2141) FT /product="MtPH-M-I-Ia_1p" FT /translation="MDSLKRKVSANPPSTNNEGQSSKASWRDIKATEYFVK FT ACLDQVTKGQRNGTCFTKKGWQGIVSQFHEQSGLNYDKVQLKNRYDSLRKE FT WKVWYNLFGKVTGLGWNFEKNTVDASDEWWEKKELVCESQIFCLGYFYVYI FT YHSFICVMNMQENPQYAKFRDKGLPFAHQLTTLFKDVVANGEHAWAPSSGV FT LPNENLGNDDIDVGLDDAEGSGDSEDASIGAATGFGNINLNTSQGAVSQSS FT GQKRKRVIGAEQKGKKKATPSTSIAEAVNVIAETCKSRNEAISNASIGEVM FT AEIQTMEAVTSDLEFHTMCCNLMMFKPAREMFVSLRGFEERRLIWLKFASF FT NPTLFMRP" FT CDS join(3308..4150,4154..4660) FT /product="MtPH-M-I-Ia_2p" FT /translation="MVCLYIVIYTHVHFIKMNFWKEQLEHNTQEEEDDDTF FT EESYILAALLGEYATKYLCKEPCRTSELTGHAWVQEILQGNPTRCYEMFRM FT EKHIFHKLCHELVEHDLKSSKHMGVEEMVAMFLVVVGHGVGNRMIQERFQH FT SGETVSRHFHRVLHACLKLSFKYIKPEDPMFCECHAKIKNDQRYWPFFKNA FT IGVIDGTHVSCVVSASEQPRFIGRKGYPTQNIMAVCDWNMCFTFVLAGWEG FT TAHDARVFDKALTTANLNFPHPPQGMLYIALLYMINLLYQLIYFHILIINL FT FLGKYYLVDSGYPTPIGYIGPYRCERYHLPEFRRSSGFENHNEVFNYYHSS FT LRCTIERTFGVWKNRFAILRSMPKFKYETQVHIVVATMAIHNFIRRSAEMD FT VDFNLYEDENTVIHHDDDHRSTNLNQSQSFNVASSSEMDHARNSIRDQIIA FT YKLNN" XX SQ Sequence 5140 BP; 1595 A; 757 C; 944 G; 1844 T; 0 other; gtgcatgttt ggtaaagctt cttcacgcct caaacccacg ttttcttctc caaacgcgag 60 ttcggcggtt cctatgatgt ttggatgaat tcaaacgcga ttctgtagat tgtacggcaa 120 gtgctcaaac gcggtttggg atgacgctac aaatctgagc ttctgcggca gatcaaaatc 180 acttttcaac ctttaatttc tcaaggtaca agtacttacc taattacccc taaattcaag 240 ccttcaattt ttctttctcc tagttttctt ccttttcatt acttcacatc acttcaacct 300 taaattttct gctacttggg aagattttgc aaatccaagc tttcaatttt cttcagattt 360 tcctctattt tttcagattt tgtggttaat ctcattactc atggtagatg tgttggttgg 420 gtgaatttat tcattcatct ttcccctata tatgatgctt atgagctact tgtgagaatc 480 atttcattgt tctgccaagg cctaaaggta aatacatatt cataaaaaaa aattgctttg 540 ttttcttgct tcaaaactgt taatttctat ctctatttgc tctagttgtt ataaatttta 600 ccttaatttt ttcatcctgt atcaatgcat tgtatgtgtt tgataaatag tctcaaagaa 660 gaaaacaatt ttcttattga tatgtttatg atgactgttc tattattatt gacatgttta 720 tgtttttttt tctctcctgt tgttctgttt tgagcaatga gtgtattgtt tttgtttaaa 780 gttacttggt gtgagtttaa attaattgaa cttgaatgaa ataatgtaag aaaagcaact 840 tacaacttca agccattgtt gtattactaa tttttatgta ttttcattgt tagataaacc 900 ttttccaacc tttacaaaaa agagttacat ttagcacaaa gtaacagaac ttcttttagt 960 atttttgttt tgttttctgc tatcattttc atatgcacaa aacaaggata ttggtgtcag 1020 tttgatcaag ttccttatgt atagtttgtt tcattttttt atcatacttt tgtgtatata 1080 gtattatgga ctcacttaag aggaaagttt ctgctaaccc cccatcaact aacaatgagg 1140 gtcaaagttc caaagctagt tggagggata ttaaagccac tgagtacttt gtgaaggcat 1200 gtttggatca agttaccaag ggtcaacgaa atggtacttg ttttaccaag aaaggatggc 1260 aaggtattgt ttcccaattt catgaacaaa gtggactgaa ttatgacaag gtacaattga 1320 agaataggta tgatagcttg agaaaggaat ggaaagtatg gtataacttg tttggaaaag 1380 ttacaggatt aggatggaat tttgagaaga acaccgttga tgcatccgat gagtggtggg 1440 agaagaaaga attggtatgt gaatcacaaa tattttgttt aggatacttt tatgtttata 1500 tttaccatag ttttatatgt taggttatga atatgcagga aaatcctcaa tatgcaaagt 1560 ttagagacaa gggacttcca tttgctcacc aactaaccac acttttcaag gatgtagtgg 1620 ctaatggaga gcatgcttgg gcaccatcaa gtggtgtatt acctaatgag aacttgggta 1680 atgatgatat tgatgttggc ttggatgatg cagaaggttc gggtgatagt gaagatgcaa 1740 gcattggagc agcaactggt tttggaaata ttaacttgaa tacatcacaa ggagctgtta 1800 gtcaaagtag tggacaaaag agaaagagag ttattggggc tgaacagaaa ggaaagaaaa 1860 aagctactcc ttcaacgtca atagctgagg ctgttaatgt tattgcggag acttgcaagt 1920 cgcggaatga ggctataagt aatgcatcta ttggtgaggt gatggctgag attcaaacca 1980 tggaggcagt tacttctgat ttagagtttc atacaatgtg ttgtaaccta atgatgttta 2040 agccagctag ggagatgttt gtatcactgc ggggttttga ggaaagaagg ttgatttggc 2100 tcaaatttgc atcattcaac cctactctat tcatgaggcc gtgatttgga aaaaaaattg 2160 gctcaagaat tggcttagtg atgcgtcttg gacttagctt atgcttttgg acttagttta 2220 tgtatttggt ttcttagttt atgtatttgg ttgcttagtt tgtgtttaga tctttattat 2280 atcgcactat gtgtgaggat tttcctttat aaattccgta ttaagaactc aagtagtatg 2340 gtgatataaa acctatgtat tatgccttgt gaatttgaat gaagtgaatt tgttacatgg 2400 ttgcctctgt tattttttat atgtcttatg acttattggt tatattatta aatggtaatg 2460 gaaactattg tgtctggcag gcaagtgtgt actagtttgt gctaagctgc aaaaggatgt 2520 actttatgta gatgtgttga agattgagac tacaacaaaa ttatcatctg tgtcaggtaa 2580 taaattctat gtatctgtta tgcctaaaag ttccatagtt taaattgttg attctgcttg 2640 gaattagttg gtacctatga atcatatcct aatttacata gtgattgacc tttagacatc 2700 ttatgcctca tttcttttaa gaatgttgag tgcatgtttg cttccacgtt gccgtggagt 2760 tgaatgtgcg gttggtaaac tctacaagac atagcattta tccagtttta cagtatacca 2820 aacacacttt gagttcgtcg aagctcagtg agaaacaaaa ccagtagtaa tgtatcatat 2880 ggatttttga cgatatcact tttatgccct tgctagaagt ttgaagattc ctttgaattg 2940 ttaaaccaga atcataacat tctgttcagc tttgctagtg ctataattaa ttcatatttt 3000 gatgtttaaa acacagtgta gtgccaatgg tactttattc tagaatttca ttttacctgt 3060 agtctaataa catgattatg taaagtagtg gatttttgtt agagttgctg caaacattgt 3120 gctgtaagtg tgaagataca tgcttatttg aaacatatac atcactaacc aaattacaaa 3180 caagatagtt atgggctcaa gggtatacaa tgcacatgta ttttggtgca tgtattatac 3240 tgacagatgg gatacaatgg atggtagtgt ttatatattg tgatttattt gctttacttc 3300 acaatggatg gtgtgtttat atattgtcat ttacacacat gtccacttta ttaaaatgaa 3360 cttttggaag gaacaattgg aacacaatac acaagaagaa gaagatgatg atacatttga 3420 agaatcctat attttggctg cactacttgg tgagtatgca acaaaatatt tatgcaaaga 3480 gccatgtaga actagtgagc tcacaggtca tgcatgggtt caagaaatat tgcaagggaa 3540 tcccactcgt tgttatgaga tgtttcgaat ggaaaaacat atttttcata aactttgcca 3600 tgaattggtg gaacatgatt taaagtcttc taaacatatg ggggttgaag aaatggttgc 3660 aatgtttttg gtcgttgtag gccacggtgt cggtaataga atgattcaag aaagatttca 3720 acattcgggt gagactgtaa gtagacattt tcatcgtgta cttcatgcat gccttaagtt 3780 gtccttcaaa tatattaaac ccgaagatcc tatgttttgt gaatgtcatg ccaaaattaa 3840 aaatgatcaa cgttattggc ctttttttaa gaatgctata ggagtaattg atggtacaca 3900 tgtgtcatgt gtagttagtg ctagtgagca accaaggttt attggaagaa aaggatatcc 3960 aacacaaaat attatggctg tatgtgattg gaatatgtgt ttcacttttg tattagctgg 4020 ttgggaaggc actgcccatg atgcccgtgt ttttgacaaa gctcttacta ctgctaacct 4080 taactttccg catcctcctc aaggtatgtt atacattgcc ttactatata tgattaattt 4140 gttatatcaa taattaattt attttcatat tttaataatt aatttatttt taggtaagta 4200 ttatttggta gattctggtt atccaacacc aatagggtac attggtccat atagatgtga 4260 acgttatcat cttcctgaat ttagacgttc aagtgggttc gaaaatcata atgaagtatt 4320 caattactat cactcaagtt taagatgcac aattgaaaga acttttgggg tatggaagaa 4380 tagatttgca attctacgta gcatgcctaa gttcaaatat gagacacaag ttcatatagt 4440 tgtcgcaaca atggcaatac acaactttat tagaaggagt gctgaaatgg atgttgattt 4500 taatctttat gaagatgaaa atacagtcat tcaccatgat gatgatcata gatcaactaa 4560 cttgaatcaa tcccaaagtt ttaatgtagc ttcttcttca gagatggatc atgctcgaaa 4620 ctcaatccgc gatcaaatta tagcgtataa gctaaataat taaaaatgta ataattttca 4680 atattatatt gcacttgaac ttatattatc tattatctat ctatttgtaa tatattttag 4740 tttacaattg tgtaactttc tcatttgttt tacatctttt tatgtttata ttattttatt 4800 aaaaatcacc caattgataa aaaattatat tagaaataac ataaattaat atttttttaa 4860 aattaatttt ggaaccaata aaattcatgt atgataaatt gaaataattt tttaatgaga 4920 atgagtttta aatacaatta aaaggatagt ttagtcatta cacattcaaa atcaattttg 4980 attcaaacta tccaaacaac atcaactcac atgaatcact tttaataaag tgtatccaaa 5040 cataatcaat tcacattcaa ctcactttta accaaaatca attctctcaa aattaattct 5100 atcaaaatca attctccccg ccgccatacc aaacacacac 5140 // ID Ogre-MT4_I repbase; DNA; DCOT; 12091 BP. XX AC AC145061; XX DT 20-MAR-2007 (Rel. 12.03, Created) DT 03-APR-2007 (Rel. 12.03, Last updated, Version 1) XX DE Autonomous LTR-retrotransposon of Ogre superfamily. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Ogre-MT4; Ogre-MT4_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-12091 RA Macas J., Neumann P.; RT "Ogre elements - A distinct group of plant Ty3/gypsy-like RT retrotransposons."; RL Gene 390(1-2), 108-116 (2007). XX DR EMBL/GenBank/DDBJ; AC145061; Positions 78938 91028. XX CC The element belongs to Ogre retrotransposons which occur in a CC number of dicot plant species. This superfamily of CC Ty3/gypsy-like elements is characterized by specific CC structural features, including an extra ORF upstream of the CC gag-pol region, a putative intron dividing the pro and rt/rh CC coding sequences, and a primer binding site complementary CC to tRNA(arg). CC In Medicago truncatula, there are distinct subfamilies of CC Ogres differing in their LTR sequences. CC Additional annotations: 6054..6356: putative intron. XX SQ Sequence 12091 BP; 3454 A; 2599 C; 2606 G; 3432 T; 0 other; gaaatggcga cttcactggg gacttagatc ctacgcgggt taaacccacc ttactttttt 60 tattttgtgc tttattattt gtttatgctt tgtaaatatt ttgcttacat gtttacttta 120 ttacgtgagt ggtgagataa gctctacacc cgagcttgag ggaaacttaa gataggacgg 180 tggtataatc atagttccat gccaagagta ctcttcggta ttggcacatg tgataacccc 240 actcaacgga gggatcttgg aagtatatgt tgtcaacgtg agtactcatg tttggcatgc 300 tattttcaag tgacctttga agttgaggac ctttagtcac ctttaaccca tcttggcctt 360 ttaggaacgt agtgcggtgg ctaatcgaga gtactcttga attagttgat acgcgatact 420 acacccaaac gagactttcc gacgaatata attggaatgg gagtactccc gttacccgat 480 aaatattcgg aagtggttaa agactttggg aacttggtag aacccttgtt acaagtgcaa 540 tctaaaaacc ttagtcctta ccaaatgacg ttgttaccct ttgactccaa catatgaatt 600 taacttcatc atgcatacat gcatccatcc ataaatattt tttccattca tcattttttt 660 ttgaaggact tataaaagct ttgttgtaaa cattgtagat atgaggaacc ttaggcagta 720 tagtttcagg aggccagatc tcttgagttt gaggaagcta gggaagaaag tggtttgtat 780 ggacgatttc tacaagcaac atggaaattt gatgggtgtt gttaagacag atatcgacga 840 agggcttctc aacgcttttg ttcagttcta tgacccgggc taccattgct ttacttttca 900 agattaccag attctcccca ccttggagga gtactcttgt tggattaatc taccagtgtt 960 ggacaaagta cctttcagtg gcctcgagga aatccccaag cactcaacca ttgccgcagc 1020 tctccatctt gaaacggacg aagtgaaagc acatctcatc actaagggaa aacttttggg 1080 tttctccacc gattttcttt acgaaaggac cacattcttt gacaaaatgg gggttgccta 1140 tgcctttaac tccatccttg ccttgcttat ttatggcctc gtactcttcc ctagcctcga 1200 caactttgtg gacattaaag ccattcaaat tttcttgtca aggaaccctg tccctacctt 1260 attaggtgat acttacctct ccatccatag gcgcacccag gctggtcgtg gaactatcct 1320 ttgttgtgca caattgctat atcgatggat cacctcgcac ttaccccgaa ctcctcgctt 1380 caccaccaat ccagaaaacc ttctttggtc aaaaagactc atgtccctga ctccaaccga 1440 ggtagtgtgg tacgatcggg tttatgacaa aggaactatt attgacagtt gtgggaaatt 1500 tgccaatgta ccacttcttg gtatagaagg aggaattagc tacaatccta cgcttgccag 1560 acgtcagttc ggatatccca tggaagggaa gccgctcagc atctatctag agaatgtgta 1620 ttacctcaac gtagatgaca gtaaaggcac gaaagagcag gttgtgcgag cttggcacac 1680 cattcgtaga agagacaaga gccagttagg gaggaagaca ggagccgttc atgaatcata 1740 tactcagtgg gtgatagata gagctgttca aattgggatg ccttacaaga tatcaagatt 1800 tgtatctgca atcactccag caccacccct acctatgacc tttgacaccg agaaggaata 1860 ccaagagcgt ttagttgagg cggaacgtga agtacaaaag tggaaagggg agtatcagaa 1920 aaaggatcag gaatatgagg ctgtgatggc cctactagag caagaagcct atgatagcca 1980 caagaaagat gtgataatcg cccagctgaa aaagagtatc agagagaaag atgccgcgct 2040 tgatcaaatt cccgggcgga agaagaagcg tatggatctc tttgatgggc cgcattctga 2100 ttttgaggag tagctcggtt cagaggcttg agagtctttc agtttgtttt gatgtttttt 2160 gtgtagttac ggagtctatc ccttggcttt gttgttagaa agggaattat ctcgttttat 2220 tttgaaagtt tttcccttgg ctttgttgtt agaaagggaa ttatcttgtt tttctttgaa 2280 agtttatccc ttggctttgt tgttagaagg ggaattatct tgtaatcaac tttgtttttt 2340 tatgatttgt ttaggttggt atgtttacaa aactgctttt ataggtcctt caataaaaat 2400 aaaaaaaaaa tatataaaaa tcgcatattt tggcatatag catatcatgc atcatattgc 2460 attcataaaa agtatcaaaa tccaagtctc atactctcct catttctgcc tcagaaaagc 2520 aaagtggccc ggcgtattca gtacaaaccc gctcgcattc acaacactcg agctcatatc 2580 aagaaaagga tgttagcggc agaacaggaa aacgctcagc tcagagagga actggttaac 2640 ctcaaggggg agatggaaag aatggcactt atgatggaaa ctatgatggc tgagagagag 2700 caagcagcaa tctccaattc aactcctgtt gtggttgtca cagctgcacc tgagggtcct 2760 ccgcaaccat ctccgactac tactacaact atcggcctca cccagcctct gataactgat 2820 ttttcttctg gtaatatggc aactatgggc aactcaggct tccgtcctct tggcccccag 2880 ggtccctttg ctactcctca atattccatg ccttcaggct acccttgggg catgccgatt 2940 gcaactaacg gggtttttgg tccaggcgct actgaaatgc ctttcgcaca gggtcaacag 3000 acttcggcac atttccagat gagtcaaccg attcctcaag ctaccatgac tcaagcaggt 3060 cctactgtgc atgttgggcc acaacatgaa gaacagattt atcactccga cagtataatg 3120 ggggatgaca aagcaatcga ttgggaagaa aggttcggtg ctctagagaa gaagatgagt 3180 aatatgcggg gaaaggaagc agtcgtccaa agcatatatg acctttgctt ggtaccagat 3240 gtaaacatac ctccaaagtt caagatgcct gtatttgaga agtatcaagg ggacacatgt 3300 ccacaaaatc atctaactat gtatattagc aagatgatag cttacaagaa taatgttccc 3360 ttactcattc actgcttcca ggatagtttg actggtccgg cacatacctg gttcatggga 3420 ttgaaaggag tcactacttt tgaacagttg gctgaggcct tcatgcaaca gtacaaatat 3480 aatacctatc tggcgccaag tcgcaaggag ttgcagtcct taacccagaa agataaagaa 3540 tcgttcaaag aatacgcaca acgcttcatt caaaaagctg ctcagattcg tcctcccttg 3600 gatgagaggg aactttcaga tttgttctat gaaaccctga gcccttgtta ttcagaaaag 3660 atgattgtct gtgcatcaca gaagttcact gacttggtgg aaacaggaat gcgtatcgag 3720 gagtgggctc gtaagggagc agctgtttcg ggaagttctt caggtggttc ttcaggagtt 3780 tcgtccagtg gtaataagaa atttgggaat ggttacccaa agaggaatgc tcaagaggtt 3840 ggcatggtgg ctcatggagg acctcagccc gtgtactcta atcacccctt tgttgccaac 3900 atcaccccac aaatgaccgc accccagaac ccaaactatc aatcacccag acctcaagga 3960 cctgcaccat actacccccc attataccaa ccactataca acctacaaca actctctcaa 4020 caaccctact atcctcaaca accataccaa caaaggccat ataacccccc acaacaacaa 4080 ccccgtcctc aagctcccta caaccagcaa aatcaaaaac aacaatttga ccccttgcca 4140 atgacctatg gagcattgct cccttcttta cttgcacaga atctggtcca aactatacca 4200 cctcctcgca ttccggaccc tctcccacgc tggtaccgtc cggaccttca ttgtatttac 4260 catcaagggg caccaggcca cgatgtggag cgttgttttg ctcttaagaa agaggttcag 4320 aaattgataa atagtaaaga gttaaccttc accgaccctg atgctgtagc tcagaacaat 4380 cctctgccta ctcatgggcc tgctgttaat atgattcaag acgatcagga agaggctcgc 4440 attctctctg taggtgatat caagactcct ctggtaccga tacatgtgaa aatgtgtaaa 4500 gcaactctct tcaaccacaa tcatgaagct tgtgacatat gtttgatgga tcctcgtgga 4560 tgtatacaag tccagaatga tatgcagggt ctcctaaata gaagggaact tgtggttaca 4620 agggaacccg agagcaagga cgtctgtgtt gtcactccgg tattcagagc caggaggcca 4680 ctggtgataa accctaacag tacaaagccc gttggtactc ccttggtaat ctgtgtgcct 4740 aggcccacgc ctactactgc tcagaaagct gtaccctata agtatgaagg cacgattctt 4800 gagcccggaa gtgagacaac ttcacctgtt gttgtggata atatcgcaga gaatagccgg 4860 attttgagga gtggccgcat ctttcctacg gtgggtccga agagtgttag tgttccggtc 4920 gatgagccag taaaagagcg aaacgccggt aaaggtaaag ctggggagca ggccaaagag 4980 tttgactttg aggatgccga tgaagtcttg aagctgatca agaagagtga atacagggtg 5040 gtggaccagc tgttacaaac tcctgcgaag atttccatca tggccctgtt atcaagttct 5100 ggtgctcatc gggatgccct gaggaaagta ctagaccagg catttgtgga ttatgatgta 5160 actctgggtc aattcgaaag cattgtgggg aatgtgaccg cgtgtaacag tctgactttc 5220 agtgatgaag atctcccggc ggaggggaat aagcataatc aagcattact catctctgta 5280 ctttgcagaa cagattcgtt atccaacgtc ttgatagata ccggctctgc acttaatgtg 5340 atgcccaagt caactctcga ccaattggcg tactccgagg ctcctttgag acttagcaag 5400 gtgacagtga gggccttcga tggaactagg agatcggtgt atggtgaggt agatttgcca 5460 atttcggtcg gcccacatga atttcaggtt actttccaag tcatggaaat ccaggcttct 5520 ttcagctgtt tgctcggcag accatggatt catgacgctg gggctgtgac atctactctc 5580 catcagaaat tgaagtttgt aagtcgtgga aagttgatca ctgtgagtgg cgagtcggcc 5640 tttttaatca gcaatttgtc tgctttctct gttatcggtg gtagtagttc ggacgggcca 5700 tcattccaag ggttctctgc cgaagaaagt gtcggtaaga tcgagacttg tatggcttcg 5760 ttgaaggatg cccggagagt aattcaggaa ggcaaaaccg gaggctgggg tcagctagtg 5820 gagttgccag aaaacaagcg taaagaggga attggtttcc ttaacagtaa gcctgggatg 5880 ttcgacccta ccagaggttc tttccacagt gctggtttca ttcatgattc gccagagacc 5940 aatgcaattt tagatgatgc acctggagga gtgacaccgg tctttgtgac gcctggagga 6000 gcttgctgca actggattgc tgttgacatt ccttctgtga caccccgctc taagtaatgt 6060 gtttgtcttg tcttttgttg tttttttgtt tttaagaaaa ctcctttcgt tctgcccaag 6120 gcgaaagtga aatcatgtag ggctttgttt tgcttctagt acttttatta caaataaaaa 6180 tcgtcgtttc tatcacggct tttattactt ttattttttt ttgttgcttt ttatggaaaa 6240 aatggtaata caaaaatcca aaaaaaaatc attctctttt tttttttttt ctcttttaaa 6300 tttcaaaacc aaaggtctgc atttactcat taaaatcaat catgaatcat gtgcagactg 6360 aacataagtg aatccgttga acacagtgac cccatgcttt ctcccaactt tgaggtcccg 6420 gtttacgagg ctgtggcaga ggaggatgaa gagatcccga atgagatcaa atggatgttg 6480 gaacaagaaa ggaagacaat tcaacctcat caggaggaga tagaaatcat caatctgggt 6540 actgaggaag acaagaaaga aatcaagatt ggggcattgt tggatgtatc tgtcaagaaa 6600 agagtaattg agcttatcag agaatatgtt gatatattcg catggtcata caaagacatg 6660 ccgggtctag accctgatgt cgttgaacac agactacctt tgaagcctga gtgtcctccg 6720 gtaaagcaga aattgagaag atctcatcct gatatggccc tcaagatcaa agaggaagtg 6780 cgaaagcaga ttgatgcagg tttcctagtc acatcagagt atcctcaatg gttggccaac 6840 atagtgcctg ttccaaagaa agatggcaaa gtcagaatgt gtgttgatta tcgggacttg 6900 aacaaggcta gtccgaagga taattttcct ttacctcaca ttgatgtatt ggttgataat 6960 actgctaagt gcaaggtttt ctccttcatg gacggtttct ccggctacaa tcagatcagg 7020 atggctcctg aggatagaga aaagacgtct ttcatcacgc cctggggtgc tttctgctat 7080 gtggtgatgc catttggttt gataaatgct ggtgccactt accaaagggg tatgaccaaa 7140 atctttcatg atatgattca caaagaaatt gaggtctacg tagatgatat gattgttaag 7200 tctggcacag aagaagaaca tgttgagtat ttgttgaaga tgtttcagcg gttgagaaag 7260 tacaagctcc ggttgaatcc taacaaatgt actttcggtg tcagatctgg taaactccta 7320 ggctttatcg tcagtcaaaa gggtattgaa gttgatcccg acaaggtcag agccatcaga 7380 gaaatgcctg ttccaaagac agagaagcaa gtcagaggtt ttcttggtag actcaattat 7440 atctccagat ttatctctca catgactgcc acatgtggac caattttcaa gttactccgc 7500 aaggatcaag gggtggagtg gaatgatgat tgtcagaagg cttttgatca aatcaaagaa 7560 tatctgttag aacctccaat tcttgttcct ccagttgacg gaagaccttt gatcatgtat 7620 ttaactgtac tggaagattc catgggctgt gttttgggtc aacaagatga aaccggaaag 7680 aaagagcacg ctatctacta tttgagtaag aagttcactg attgtgagtc ccgatattct 7740 gtacttgaga aaacttgttg tgctttaact tgggctgcca agcgtctccg tcattatatg 7800 attaatcata caacttggtt gatatccaag atggatccta tcaagtacat atttgagaag 7860 ccagctttaa ctggaaggat tgctcgctgg cagatgttat tgtccgagta tgatatcgag 7920 tatcgcactc agaaagcagt caaaggtagc atcttggcag aacatttggc tcatcaacca 7980 atcgaagact atcaatcaat caaattcgac ttcccagatg aagaggttat gtatctaaaa 8040 gcaaaagatt gtgacgaacc agtgttcggt gaaggtcctg atcctgaatc cgaatggggt 8100 ttgatatttg atggagctgt taatgtctat ggaagtggaa ttggtgcggt cctcattacc 8160 cctaagggta ctcacatccc ttttactgcg aggttacgtt ttgattgcac aaacaacatc 8220 gcagagtacg aagcttgcat catgggtatc gaggaagcca tcgatttgag gatcaagaaa 8280 attgtcattt atggagattc cgctcttgtg attaaccaga tcaaaggaga atgggaaact 8340 cgccatcctg gtttgattcc ctacagagat tatgcgagac gattgctgac tttcttcaac 8400 aaagtagagt tacatcatgt gccccgcgat gagaatcaaa tggcagatgc tttagctact 8460 ctatcctcaa tgatcaatgt gaatggtcac aatactgtgc cagtaatcaa tgtccaattt 8520 ctcgaccgac ctgcttatgt gtttgtagct gaagcaattg atgatgacaa gccatggtat 8580 catgatatcc aagttttcct tcaaactcaa aagtacccac ctggggcatc caacaaggac 8640 aagaaaacat tgagaagatt gtcaagccgt ttcttcctta acgaagacgt tttgtataaa 8700 aggaactttg atggggtcct acttagatgt gtggataagc atgaagcaga aaaattgatg 8760 tgcgagattc atgaaggctc tttcggaact cactcatgtg ggcacgccat ggcgaagaag 8820 atattgagag ctgggtacta ctggataaca atgcacgctg attgctacaa tcatgccaag 8880 agatgccaca aatgtcaaat ctatgctgac aagattcata taccaccatc tatgctcaat 8940 gtcatctctt ccccgtggcc cttctctatg tggggcattg acatgattgg tcggattgaa 9000 ccaaaggctt ccaatgggca tcgcttcata ttagtggcta tcgattattt caccaagtgg 9060 gttgaagcag catcttatgc caatgtgacc aagcaggtag tggtcagatt tatcaagaac 9120 aacctcatca gccgctacgg tgttcccaac agaatcatca cagacaatgg cacaaatctg 9180 aataacaaca tgatgaaaga gttgtgcgat gacttcaaga ttcaacatca caattcttct 9240 ccttacagac cacagatgaa tggggcagtt gaagctgcaa acaagaacat caagaagatc 9300 atacagaaga tggtagttac ttataaggac tggcatgaaa tgttacccta cgctttgtat 9360 ggataccgta cctcagtgcg aacctcgaca ggggcaaccc ctttctcttt ggtatatggt 9420 atggaggctg tactacctgt agaggttgag attccttctt taagagtctt gatggaagct 9480 gaattgtctg aagctgaatg gtgccagagc aggtacgacc agttgaattt gattgaggaa 9540 aaacgtatgg ctgctttgtg tcatggacag ttatatcagt caaggatgaa acaagcattt 9600 gataaaggag tccatccccg cgaattcaag gaaggagatc ttgtgctcaa atgtatcaaa 9660 tcctttcaac cagatcctag gggcaaatgg acgccaaact atgaaggtcc ctatgtggtg 9720 aagagagctt tctctggtgg tgctttaatt cttacaaata tggatggaga ggagttacct 9780 cgtcctgtga attctgatgc agtcaagaaa tactttgtct aaatatataa aagaacagct 9840 cggtaggtcg aaaacctgaa agggcggctt aaaccaaaaa tgagcgtctc ggtggatcga 9900 aaacccgaaa gggcggtcca ggcaaaaatt agagacagaa aaaaaaaaaa aaaaaaagaa 9960 gggaaattat cctgatagat cgaaaacccg caagggcgat ctatgcaaaa attaaggatc 10020 gagacaagta actgcatcag atgaaacatc actcgcccga gacaccttga ctgtcagaag 10080 ttctctaatg ttgaagcatc caaactgtgg aattcaaagt ggttaagaag tatagcggtc 10140 attgtgttca atgtacctat cccatataat taccatattc caactctttg taatctgtgg 10200 tgccatgcct ttagccggtc accatttcta ttaaatcaat ttgagcatgt gcccctttgt 10260 tggaattctt gtttattcta tgtgcaaaaa aatctttctt tcgtttttag tattagtatt 10320 tgaaacaaaa ttttgaaaaa aacttttcta aagattttat gttttctttc taaaaaaaaa 10380 aaaaaaaaaa aaaaaaaaaa aaaacaacaa aaaaaatgac aaacatatta tctttaaaaa 10440 catgtatcac ataagtatgt gtcaacagtt ggtccgaaac aagcaggttc aacaaagaag 10500 aaatagtcat tgcaaaaaaa aagagcgccc tggtggatcg aaaacccgaa agggcgatct 10560 aggtaaaaat taggggcata caaaaagaga aaaagaaaaa tgtctccccg gtggattgaa 10620 aatccgaaag gacgatccag gcaaaagtta gggatttcaa atataaatac aaaaagcaat 10680 gactattcag acaagacagt acggtgttgc attgatgaaa tggcgacttc taccacagtt 10740 tgtgaagact tacctcagca gtatgtttaa gggctgtacc ctaacaatgt ttgattcatt 10800 ccccgtgact ttatccccat tgaaggcttt gagtgttcgt acagtgatgc cgggccattc 10860 tcctcgtaga cctgcccagt cctgtctcaa caatcttacc attacaccat catatgagtc 10920 tcatacatat tcattcattc atgcatacat agcacgcata taaacaccat ccatacatag 10980 tttctttttt tacccaatat tttgcttcat tatcctcaaa atgggtctaa actcaggtat 11040 gttataaaac caatcgtgtt tcaaagtggc aggtctcgcc agtaaccagt ctatacagtt 11100 gccccatcgt cttcagacaa tttcattttt cccctcaggt gtatctttgt caagttaatc 11160 cccactcata tcaagcttta caatgtcttt actttagcca ctcgtcggcc catcatgtct 11220 ttactttcgc cactcgtcgg ccaatcatgt ctttaatttc gccactcgtc ggcccatcat 11280 gtctttaatt tcgccactca tcggcccgtc atgtctttac tttagccact cgtcggcccg 11340 tcttgtcttt actttagcca ctcgtcggcc cgtcatgtct ttactttagc cgctcgtcgg 11400 cctgtcttgt ctttacctta gccactcgtc ggcccgtcat gtctttacgt tcgccactcg 11460 tcggccaatc atgtctttac tttcgccact cgtcagcaat caatcatgtc tttactttcg 11520 ccactcgtcg gccaatcatg tctttacttt cgccactcgt cggcaatcaa tcatgtcttt 11580 actttcgcca ctcgtcggca attaatcatg tctttacatt cgccactcgt cggcaatcaa 11640 tcatgtcttt actttcgcca ctcgtcggcc aatcatgtct ttactttcgc cactcgtcgg 11700 caatcaatca tgtctttact ttcgccactc gtcggcaatt aatcatgtct ttacattcgc 11760 cactcgtcgg caatcaatca tgtctttact ttcgccactc gtcggccaat catgtcttta 11820 ctttcgcctt gaaacattgt catttatact tacctatcat ttctttcccc agtgatacct 11880 atccatttgg ctcccagtca gcctctgcat catcgttacc ttcatactta catcatattc 11940 agtcgtatta tcacattcat cagcattaca tctctggcgt ttcaaatggt ccaaaattgg 12000 cgtttttata tatttaagtc tctccgaccc tttggtttaa aaagttctct tttaaaacct 12060 ttgtgacgaa gaaacttaaa taggggcatc t 12091 // ID BNINTMO repbase; DNA; DCOT; 632 BP. XX AC X99804; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE B.napus DNA fragment with retrotransposon intergrase motif. XX KW Non-LTR Retrotransposon; Transposable Element; integrase; KW retrotransposon; BNINTMO. XX OS Brassica napus OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; malvids; Brassicales; Brassicaceae; Brassica. XX RN [1] RP 1-632 RA Elborough M.K., Storey E.S.; RT "Direct submission."; RL Unpublished. XX RN [2] RP 1-632 RA Elborough M.K.; RT "BNINTMO."; RL Direct Submission to Genbank (06-AUG-1996)K.M. Elborough, RL University Of Durham, Biological Sciences, South Road, Durham, RL Co. Durham, UK. XX DR GenBank; X99804; Positions 1 632. XX SQ Sequence 632 BP; 160 A; 132 C; 179 G; 161 T; 0 other; tgatccgtag tggttggaag tttcctacct gccagttcgt aaaggccgaa catcaagtgc 60 ccaatggtat gtttcagaac ttcctatacc agagtggaag tgggatcaca tcacaatgga 120 tttcgtgacc ggttttccta tgactaggaa ccgtaaggat gcggtgtggg ttgtggtcaa 180 tcggctaacc aagtcggctc atttcttact ggtccggaag ggggatggag tggatcagat 240 cgtaaggatt tacttggacg agatagtacg tctgcatgga gtgccggcta gtattgtctc 300 gaatagagat cctaggttca cctcttatct ctggcaggct tttaaaaaag ccttaggaac 360 aagagtgaac atgagcacaa cttatcatcc tcagacggat gggcagtcag agaggacgat 420 ccagacgttg gaggacatgc tgagggccgt ggtattggat tggggcgact catgggagaa 480 acatctaccc ttggtcgagt ttgcctacaa caacagtttc cataccaaca ttggtatgtc 540 accttatgaa gctttgtatg gacggccttg caggacacca ttatgctgga cccaagtggg 600 ggagagaagc atatttggcc ccgtggatcc ag 632 // ID SHALINE2_MT repbase; DNA; DCOT; 7617 BP. XX AC . XX DT 19-DEC-2006 (Rel. 11.12, Created) DT 19-DEC-2006 (Rel. 11.12, Last updated, Version 1) XX DE A LINE from Medicago truncatula. XX KW L1; Non-LTR Retrotransposon; Transposable Element; Nonautonomous; KW retroposon; LINE; repeat; Interspersed; SHALINE2_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-7617 RA Shankar R., Jurka J.; RT "SHALINE2_MT: A putative non-autonomous LINE element from barrel RT medic."; RL Direct Submission to Repbase Update (19-DEC-2006). XX DR [1] (Consensus) XX CC The sequence contains 2 ORFs. One products of this sequence is CC Ethylene insensitive protein while another one is RT polymerase. XX FH Key Location/Qualifiers FT CDS 1565..2272 FT /product="SHALINE2_MT_1p" FT /translation="PPCKSYVSFVAADYGFHNNAGNYSGRGEVDSDLMDIY FT NSGIQLNKNTNVMSTMIPTSGVNHNVHHQIYHASAQLEKNNMSTMIPNHGI FT NQSMHRQIYTGSVQQNKNTIMSTMVPTPSVNLHPQVYTSSVHQQQKRNTMM FT NTSMMSNSMPVMNMVATPGFNQNMQHQMDQNFYAQQGGANSYYHCKVRDAE FT VANVPMQANVSTTSFDPTFEHLKAFNSQFDVDAYNNSVASSSYNWN" FT CDS 5051..6994 FT /product="SHALINE2_MT_2p" FT /translation="MKNILSLYEAASGQAISLPKSEIYCSRNVTDPLKHTI FT TNICSRNVPDPLKHTITNILGVQAVLGTGKYLGLPSMIGRDRNSTFSYIKD FT RVWQKINSWSSKCLSKAGREVMIKSVLQAIPSYVMSIFQLPTTLINSIEKM FT MNSFWWGHGRTTQRGIHWMSWEKLSMPKIHGGMGFKDLTAFNLAMLGKQGW FT KFLTEPDSLVSRIFKARYFPSGTYLTANLGHNPSYVWRSILRARFIVCGGA FT RWSIGSGASIPILNEPWLSNGECIDGDITGAHFVQNFTVNSLMNLYXKSWN FT EQVVRQVFSXDIADKILHTPLIAQVQEDRLIWKAERHGRYSVRSAYRLCVX FT ELIDSSYLWRPGYWSGIWNLKVPPKVKNLVWRMCRGXLPTRVRLLDKGVQC FT PTNCVSCASNHEDLAHVFFDCPFAIQVWNRTGLWGAIQHAMSSTTSAADAI FT FYLLETLSIELNQRLASXIWSLWKHRNLKVWDDVTETSATVVERARNMFDD FT WQLANAPTVIVPSPQHQVQQPIDEGISAAILYPCGSSASAISSGWQHLCLV FT GISVTLMPLSFLTSTVPXLVFVFEILKVRLFWPRLLVSYPCIYSVDVGEAL FT GLHSALQDKLPFDEKLMKIGCQLAYVFNLCFKIGETTLHLFFYSPLAIKL" XX SQ Sequence 7617 BP; 2164 A; 1289 C; 1514 G; 2622 T; 28 other; ggaattacaa caacaaatta tgaaaagttg aatggtgaac caattacact tcactcgctg 60 aatgaactat ccgacaccat attaggttca cttctctcat cattagtgcc gcattgtcac 120 ccaccacaac ggagttttcc attggaaaaa ggcattcctc caccatggtg gccaacaggg 180 aaagaatcat ggaggaatga gatgagattt tgtgaagaac ctggcctacc cccttataga 240 aagccgcata atctaaagaa ggtttggaag gtttatgttt tggcagcggt tattaaacat 300 atgtctccta atgttcataa tattaggaac atagtcagac aatcaaggag tttacaagat 360 aaactcacta tgaaggaaac atctatttgg ggtgcaatta ttgatcatga agaaacaatt 420 gcaagaaaaa tacatcctga atttttctca agttttgatt ctcgtgttga aggaagtaat 480 tatttgcatg ttgaggcaaa tgatgttgat gttgtggaag gtggtgagca caatctagca 540 aaacgaaaat tatcaccatc atcttcacca tcatcatcgt cctcatcgtc atatgagggt 600 actaacaaga gaaaacgtaa acttggcaag aaaattggta ctcatcataa ctcttttctt 660 aacactcatc aacatgctac acctcttgac caacatgaat tccagaagga gaggaatgtg 720 agaaacaatc atcatgttac cagtacacat attggaagca gcagtaacat caacaacaac 780 aaccaattcc aaatggttgg agttgaagtg tcaactactc atcaaaatgt tgcacctctt 840 gcccaacgtg tgcaacctgc ggtacctgtt gcaaatcaga tcattcatca tacaggtaat 900 cattattatt atccaaactt attttcttct actttgttag tcaaaaactt ttttttgcca 960 tttgatgtat gacttgaatc tttgacttat tttcagtcta gtaaattata tgttagctta 1020 taggtttgcg aagttgcttg tttcaaactt aaaatagtat ttttatttaa ctaggaaaat 1080 gttagcttat aggtctcaat tttggacatc attcttaaaa cttattagtg acttaactga 1140 tcatcttaca ataatgtagc atcatataag ttattatatt acaattcata ataagatttg 1200 actcatgctt tagaaaatag gccttatcat tcacaatatg attatggtta ggggcgaatc 1260 ccttcacatc aatggggtag catctacccc aaaagaaaaa taaatctggc tatagttttg 1320 aatgtagata tttatttata ttacttggct actttaaaca atttagttta gtgtcaatta 1380 taaataaatt tgatttttaa aaattcatag agttcaactt ctatacataa tatttgttag 1440 attttatttt cttcgttgta gtttcattaa atataactaa aaattaatgt aaatttattt 1500 tacttattaa ttaggttcac tatattaact tttaaaatat atattttttt ttctatgtat 1560 ttgacctcct tgtaaaagtt atgttagctt tgtcgccgct gattatggat ttcataacaa 1620 tgcaggcaat tactcaggaa gaggagaagt ggattctgat ttgatggaca tatataattc 1680 aggcattcag ctgaataaaa acaccaacgt catgagtacg atgattccaa cttctggtgt 1740 taatcataac gtgcaccatc aaatctacca tgcaagtgct caactggaga agaacaacat 1800 gagtactatg attccaaatc acggtatcaa tcaaagcatg catcgtcaaa tctacactgg 1860 aagtgttcaa cagaacaaga acaccatcat gagtactatg gttccaactc ctagtgtaaa 1920 cttgcatcct caggtctaca cttcaagtgt tcatcaacaa cagaagagaa acaccatgat 1980 gaatacctca atgatgagta attcaatgcc agttatgaac atggttgcca ctcccggatt 2040 taaccaaaac atgcagcatc aaatggatca aaatttctat gcgcaacaag ggggtgcaaa 2100 tagctattat cattgcaaag tgcgtgatgc tgaagtagct aatgttccaa tgcaagcaaa 2160 tgtctcaaca acaagctttg atccaacttt tgagcatttg aaggcattca attcccaatt 2220 tgatgttgat gcttacaaca actctgtggc atcatcaagt tataattgga attaataatt 2280 aaggtaaaat catgaattac tttttaaaaa gtttcaccaa tttttctcaa atagccccct 2340 cttctggtta aagagagtga aactaataat tggtaattta tgattttact tgtaggtcat 2400 tggaaaagga agctttgtgt ttgttatgtg ttcttttgtt aagtttgtgt tattttcttt 2460 aattagtctg cacaaggtgt cgcttcgaga tgcctagcta catagtattt ttttttaagg 2520 aagctacata gtattattaa gcatatttat gaacaatgaa tttgagtgtg gccattatat 2580 gaaggcaggt gtgttgtgtt tatgctcatc atatgaaatg cagacaatta ttttagggtt 2640 tgtgtctttg catatatttt ttttaactgt catgttattt atttttcctt agtcatttac 2700 tttttaacct attttaccgt tgaaagtaaa atcattctct cctattttac tattcttcaa 2760 tcaatgaaga agggatatta taaataaaaa ataataaaga agggaatgga agctaaacat 2820 aacattataa agacgggttt gtgtttgttt ctgccttcct tcttgccgtg agaggatatt 2880 ctctcctatt ttgctattca atcaattgta attacaagta acggttggta ttaatggtgc 2940 acatgctttt ttcttgtctt ccttgtttca ttacttttcg tattgcatca catatatatt 3000 attgaaggat tgatagtggt tcttaatact attacttact gttgcttttg atgccacggg 3060 ttcagccatt atggtgatag aggtttttgg aatttttggg aatgaattag gtgttgttag 3120 tggaatattg gaattaagtc taatcttgcc aaggtaaatc agtcttatag ggtggaattg 3180 ccaggtttag gtagctcgag cgcaattcct gacctaaaat acctagctcg acacttcaat 3240 ccggacctcc tcttcttaag tgagacatta gtccaccgaa ataaaattga agatttacgt 3300 tatttgcttg gttttgatgc ttgtttttat gtagaccgca ccggcagagg agggggtctt 3360 gctttatttt ggcacaattc tttaaattgt cagctttttg atttttctaa taatcatatc 3420 actgttgaga ttattgatta tgttcttggt acttggagac ttaccgaata ttatggttat 3480 cctaatggag gtcgtagaac tgctgcttgg aattttctcc gacaactttc taatcaattt 3540 gcaagtcctt ggtgtatttt tggtgatttt aatgatattt tggatgcaag tgaraaaaga 3600 ggtcgcaact ctagaccccc atggctgaty aatggctttc gacaagctgt gcttgattca 3660 ggtttgtctg atgttcagat tgaaggctat ccctttactt ggtttaaaag tctaggtacg 3720 ccacgtgcgg tagaggaaag gttagattgt gctcttgcta ataatttgtg gtttaattta 3780 tttycgratg cttatgtaga aactcttgtg gcaccagctt ctgatcatta tcctattctt 3840 ttaaatcgta ctcctatgcc tcggcctcat ctcaataaac gccattttcg ttatgaaaat 3900 gcgtggcayt ttgaaccggg gtttaaggaa atggttacta attcttggca ggtatattct 3960 agcaatcgtc ttattccaaa gttgttctct tgtgcggaag atatgttyat ttggagtaaa 4020 tmtcattgyc aaaaattaaa aagagacatt gaagactgtc gtaaacaatt gaaaaatact 4080 cggctcaact cttcaggtga ggawtaggtc cgcatgtatg agytaacgaa acgcatgcag 4140 cgtttattat ctcaagatga tgcttattgg cgtcaacgtg caaagaccca ttggtataag 4200 gatggagaca aaaataccaa attttttcat gcttccgcta cggctagaaa gaaggtaaat 4260 cgtattattt ctcttgatga tgatgctggt aataaaatta ctgatgagca gggtttacac 4320 gatgtcgcaa gaaattattt tgtgaatatt tttcaaaagc aaggaagtga tttatctcct 4380 gttattgatg ttattaacta gtctatttct gcttttgata atgagaaact camggcwccy 4440 ttcaccaagg ccgagtttcg tgctgctatg ttttccatgc acccggataa atgtccaggt 4500 cctgatggtt tcaatcyggg tttttaccaa catttttgga atttgtgtag tgatgatatt 4560 tttaaagaat gttgtggttg gtcaattatg gataatgcta tggttgcaat ygaggttatt 4620 catttcatga aaactaagac gaggggcgag gacagatatg ttgctcttaa actagatatt 4680 agtaaggctt atgatcgtat ggattgggat tacttgagag ccgttatgat taaaatgggg 4740 ttcaatgttc tttggattcg ttttcataaa atgctctttg gattcattgg atgagtatgt 4800 gtgtagagtc agtggattat tctgttcttg ttaatagtga aaaggttggc cctattattc 4860 cggggcgcgg cattcgacaa ggggatcctc tttccccgta tttgtttatt atttgtgcag 4920 aaggtctatc ttctcttatt agagatgccg agrcgagagg tgttattaca ggtaccaaaa 4980 tttgtcgagg ggcgccctct gtttctcatc ttttcttttc ttcaaagctg acgagagtca 5040 agcacatgtt atgaagaata ttctctcctt atatgaagca gcgtctggtc aagccatcag 5100 tttgccaaag tctgaaattt attgtagtcg taatgttact gatcccctaa agcatacaat 5160 cactaatatc tgtagtcgta atgttcccga tcccctgaag catacaatca ctaatattct 5220 tggggttcag gctgttttgg gaacaggtaa atacttgggt ttaccttcta tgataggtag 5280 agaccgcaat tcaacttttt cttatatcaa ggatcgtgtt tggcagaaaa taaattcttg 5340 gagtagtaag tgtctatcta aagcagggcg tgaggttatg ataaaatctg tcttgcaggc 5400 tattccgtca tatgtcatga gtatttttca gctaccgact actttaatta actccattga 5460 gaagatgatg aattctttct ggtggggtca tggtagaact acacaacgag gtattcattg 5520 gatgagttgg gagaagctgt caatgcctaa gattcatgga ggaatgggtt tcaaggacct 5580 cactgctttt aatttggcta tgctaggtaa gcaggggtgg aaatttctta cagaacctga 5640 ctctcttgtc tctcgtattt ttaaagctcg atattttccc tctggtacct atctcacggc 5700 caaccttggt cataatccga gctatgtttg gcgtagtatt ctgcgcgcta gatttattgt 5760 ttgtggtggt gctcgatgga gtattggttc aggtgcgtct attcctattc tgaatgaacc 5820 gtggttgtct aatggggagt gtattgatgg tgatattaca ggtgctcatt ttgttcaaaa 5880 ttttactgtt aatagtttga tgaatttata tgrtaagagt tggaatgaac aggtagttcg 5940 acaggtgttt agtgwtgata tagcagacaa aattcttcat acgccactta ttgctcaggt 6000 acaagaggat agacttattt ggaaagcgga aagacatggt cgttattctg ttcgtagtgc 6060 ttacaggtta tgtgtgaamg aacttattga ttcttcttat ctttggcgtc cgggttattg 6120 gtctggtatt tggaatctma aagttccycc gaaggttaag aatttagtkt ggcgtatgtg 6180 tcggggctkc ttaccgactc gwgttcgtct gcttgataaa ggagtccaat gtccaactaa 6240 ttgtgttagt tgtgcctcga atcatgagga ccttgctcat gtattttttg attgtccttt 6300 tgctatccag gtttggaata ggacaggyct ttggggtgct attcaacatg ccatgtcatc 6360 tactacttca gctgctgatg ctatttttta tttgctggaa actttgtcta ttgaacttaa 6420 ccaacggttg gcatctayaa tttggagtct atggaagcac cgtaatctta aagtttggga 6480 tgatgttaca gaaacaagtg ccacggttgt tgagcgtgct agraacatgt ttgatgattg 6540 gcaactggct aatgctccca ctgtaattgt tccatctcct caacatcaag tgcaacaacc 6600 tattgacgag gggatttcgg ccgcaatttt gtatccatgt ggtagttcgg catctgcaat 6660 atcctctggc tggcagcacc tctgtctggt aggtataagt gtaacattga tgccgctttc 6720 ttttctcacc tcaaccgtac cagyattggt atttgtgttc gagattctga aggtacgttt 6780 gttctggcca agactgctag ttagttaccc atgtatttat tcggttgatg ttggtgaagc 6840 tttgggattg cactctgctt tgcaggacaa attacctttt gatgagaagt tgatgaaaat 6900 aggctgccaa ctagcatatg tcttcaatct ttgcttcaaa ataggtgaaa ccactcttca 6960 cctcttcttc tatagccctc tagctattaa gctttgatta ctttggaact atggaggatg 7020 tttggaattt atgtgaggtc ttggtctcct taatgaaaaa ttgtcattat tgcagctttg 7080 gttaacctta ttaacactat ttggtttgtg agaaatgaag ctagacttaa taacaaagta 7140 atcacttgta ggtcagttat ttcttctata attactaata catctgttac tggtaatcac 7200 acacacaaag cttccaataa ctctattaca ggcttctcaa ttctcaaaag tttcaaggtt 7260 gacattcacc attctaatgt tccttccatt atagaagtct tgtggtctcc tccactacct 7320 gacaggacaa aatgtaacac agatggagca tctgttggta accctggtcc ctcctcttgt 7380 gggggtagtt ttagagataa cgaaggtaac tgtttagggg tgtttttccg aacccttgcg 7440 atttttcaat tcttatctgg cataactatg tggggctatg agagccattg aagtggctgc 7500 tcataatcac tggtttaatc tttggttaga gacaaattct atgttagttt tgcaggcttt 7560 taaaaattca aaccttgttc catggcaaat tagaaataga tggaacaatg ttcatat 7617 // ID GYPMET_LTR repbase; DNA; DCOT; 2753 BP. XX AC AC161863; XX DT 09-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE A new long terminal repeat sequence from Medicago truncatula. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; KW Interspersed repeat; LTR retroposon; Medicago; GYPMET_LTR. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-2753 RA Shankar R., Jurka J.; RT "GYPMET: LTR retroposon from Medicago truncatula."; RL Repbase Reports 6(11), 560-560 (2006). XX DR EMBL/GenBank/DDBJ; AC161863; Positions 72832 75584. XX CC A new LTR sequence flanking internal region of a retroposon, from CC Medicago truncatula. It shares some characteristic of Gypsy-like CC LTR and the internal region is closest to Copia type. XX SQ Sequence 2753 BP; 914 A; 512 C; 472 G; 855 T; 0 other; tgactatata ttggtttata gtggggaccc tcaagctcat ctccggatag tacatagatc 60 atcttctgat agtacttggt gtgttgagaa ccaatgtcct gagggtgaat gcaaagaagt 120 gttgtttcgg catgactcag ttggaatatc gagatttaaa gtaatatatg ttgatcatgt 180 caaaattaaa gtaatgcaag agtggccttg tcccaaagat cctaaagggt tatgtgggtt 240 tctcggttta accgggtatt atagaaagac tgcttcaaat ggagtgagga aagctctcga 300 ggattacgag actctgtttt tggcgtaaac cgggtatcca ctgcacgtgc aactgcagag 360 actaatccct cgagccttgt gggacccaaa tgggcagcaa actctcctta agagttttaa 420 cgctgctgca tgtccaaggc tggattcgaa cccaggacct tggttaaact agaagagaca 480 tgtgccatct tatctaagcg ctcttgggta ggattatgag actttgaaac agaagatgga 540 tgaattacaa ttaatagcta cgcttaattt taactagccc tttgcgatag aaactgacgc 600 atcagggatc ggattgggtg cagtgctgat gcaacaggga aaaatgttga ccttctttag 660 caaagcattg tcagacaaag gcagattaaa gcctgtgtat gagagggaat tgatggcgat 720 tgtcctggaa gtacaaaagg gaaggcgtta cttgttgggg agctattttt atcatacgca 780 ctgaccataa aagtctaaag tatttgcagg aaaagagatt gttggatggt ggacagcaaa 840 agatggatga caaagttgtt gggatatgtc tttgaaaccc aatcctaaaa taattagtcc 900 cttcccaact tatatctaat taactaagac attccataaa aaaaatatct aattaactaa 960 gacatgctaa acatacaata acatatgttc ataagattta ttgtttttcg catatgggcg 1020 actaatgacg agattgttac tcatcccact atatattagt aaaattcaaa tgctaaacca 1080 tatacatgta ttaaattaac aatatcatgt aagtttttga ctcttttgtc aacttcataa 1140 taataaataa aatatcattt tcaacttact cgtagaaaaa aagtaaaaaa taccttgacc 1200 atgcatattt atcttgaatc aggctattca aattttcttt tgtgctctca ataaatctag 1260 aacaaaggtt gtccacaata tgcgtatacg tcaaaaaaag ctcagctcaa tacttcctta 1320 caaggagagg tgggaagaca ttttctctgt gcattaaaaa caatcataca atgagttgca 1380 tggaattcag tgacacccaa tgcctgttat tggtcaatat acttagtaac aaggtaaaaa 1440 atttatgagt atattgacca acaacagtag aatgagattg agatttctaa tgcatacata 1500 acgacttacc ccaacacctg aatctacaat tctacttcaa cattaccctc agcgtcaaga 1560 aaaccatttt cacaggcacg ctcaagatca aatacatccc ccgggtgagc cttacaaact 1620 aagtgaaatc gatctgaata aactcaaatg aaatggttag taatagtaaa gctttttttt 1680 tttttttaaa taataaaaaa cctaccaaaa caatcagttc gcccggggtc aagggggtga 1740 attatcgcta atgtgttaag tgcataaaag ttcaacattg gattgttgtc tatgtcagca 1800 aataactcaa atcgcaacga ggttcccatc cgacgaacca tgaaagtcct gcattggcat 1860 atcaatcttt acttatatct ttacaattat tcactcttca atatataaaa tagaaaatta 1920 agaaagttgc ataccattta tactctccaa gttcgatgag taaagagtca tatccagaaa 1980 tcggctttag tgtcaacaat gttttcgtat atagttttga cacattattt ccatcttcaa 2040 caatgttatg ggattccaaa agatcccgaa ttacattacg aaatgttatt ctcaacctgc 2100 gtactgagat ttgagagaga ggaaaataag catgagtata ttaaggagat cttcttgcta 2160 tgtttaaaga gatgcttacc actttcttcc tccacctcca catacaaagc aacaacattt 2220 tcttgtgctt ccacgtacaa ttcagtgact gcttttttca atgcacatgc aacatactcc 2280 tcttgttgtt ccgcagttaa ttcatcaatc ttctctttca aagtagtagc aataacctca 2340 tgctttttta gggcacacat aaacaagtaa ttaagcaaag ctctcactct attcagaaaa 2400 gacgtatcct ctttcaaatc tgctgcaatc gattcatcat ttagctgcag ccacaaacag 2460 tttctagtaa gtagttaaga aaataagaaa aacccatcta tttacagcca aaatcaagtt 2520 taccgtttgc ttattctctt ctacacattt atcatttttc tttggtttag cctacaaaac 2580 aagatttttt ttttcttcat aaacataaaa atgatgataa acatatatgc atgacacacc 2640 tttttttctc cttttttctt ggacttcttt tcagtttgaa tgagctcact ttgagtaaag 2700 tttacctcaa ttttattcct gcatccatta aataaataat tagaatatga tca 2753 // ID Copia14-VV_I repbase; DNA; DCOT; 4747 BP. XX AC AM483491; XX DT 16-AUG-2007 (Rel. 12.08, Created) DT 16-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; LG_I; Copia14-VV_I. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-4747 RA Xu Z., Wang H.; RT "LTR_FINDER: an efficient tool for the prediction of full-length RT LTR retrotransposons."; RL Nucleic Acids Res 35(Web Server i), W265-W268 (2007). XX RN [2] RP 1-4747 RA Kohany O., Jurka J.; RT "LTR retrotransposons from grapevine."; RL Repbase Reports 7(8), 724-724 (2007). XX DR Genbank; AM483491; Positions 2707 7453. XX CC Positions [1982-2482] - Integrase core CC 'ATTA' target site duplication CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 1043..2647 FT /product="Copia14-VV_I_1p" FT /translation="MEDLVNQRLKIVTTRTTYGALIVRRARHTRERCWKLH FT GKPPSREWGQKGEQPSNNGQAHVTTVQQNGATPQEIGSLNQEEVERMRSLI FT CNLDKPAGTGSLAYSGKFPFSIGLNVSDITFANSWVIDSGATGHMTHSPNI FT FSTYFSCSSNRKIATADGSLTTVAGIGDVKISPSLILKNVLHVPRLTMNLI FT SIQKLTQDLHCNVVFYHSHCVFQDEDSGRMIGHARERDGLYYLKAPSQSNI FT TKGKSSHSFVSEDFSFNKEKVWLHHRRLGHPSFRVIKILFPSLFKGLDVEH FT FHCEVCELAKHKRVSFPISNKRSFIPFYLIHSDIWGPSPIPNITGAKWFVS FT FIDDCTRVTWIFLLKHKFDVSTVLPNFCSMIKTQFGVNIKRFRSDNAKDYF FT NQVLTPYFQREGIIHESSCVNTPQQNGVAERKNGHLLNSTRSFMFQKNVPK FT SFWGEAVLTTAHLINRLPSRILGFKSPMDILSTFYPNLHTTNNLVPRIFGC FT VAFVHVHNQNRGKLDPRALKCVFLGYSSTQKGYKCYHPP" XX SQ Sequence 4747 BP; 1479 A; 896 C; 992 G; 1377 T; 3 other; tggtatcaga gctgaattag gatccttgga atttattttg tttcagcttt cattgctgaa 60 tacagtgccc aatttttctt ctgtttttga aactcaaaac cgagcatttg tttcctctcc 120 tggaattttc attttcttct tggccttcat tgccattcat ttgccttctt ttttttgcct 180 tcattgtcaa tctgatctct tggctttcaa cgttgtctat tgttgaccca cgtgctttgc 240 ctgaatcacc tagaaattac tgtttttttt ccttaaaaaa tgtcagagat tgcagaaaca 300 accactacaa tctaatcaga ggagattatt cgaccccaac attccggaga attgcaaaat 360 atctaggctg catataggct ggatggaaaa aattatctga aatggtccca acttgtttgc 420 atcgtgttga aagggaaagg gaagatcagc catctcatgg gtacagggcc gaaactagga 480 gatcctcatt ttgaagcatg ggatgaagaa gactccatga ttatggcatg gttgtggaat 540 tctatgattc ttgaaatcag tgacacatgc atgttcctag ctactgccaa ggacatttgg 600 aatgcaatcc aacagacgta ctctaaggcg agagatgcag cccaagtata cgaggtcaag 660 gtgaaaaatg ttgctgctaa acagggagat aaaactgtta ctgagtatgc taatcaattg 720 aaatctttat ggcaagaact tgatcattat agggtaataa agaccaagtg tcccgaagat 780 gctgctattc tcaaggattt catagaacaa gatcgagtct atgattttct tgttggactc 840 aatccagaat ttgaccaagt gcgaatccag attcttggca agcaagaagt ttcgtgcttt 900 aatgaggtgg tggcattaat tcgaagagag gaaagcagaa gatgcctgat gcttaatcca 960 cagaacacgg acagctcggc tatggtggct ggtagtggta acaattcagc cacaaatatg 1020 gaaagagtac tagtttctgg caatggaaga tctagtcaac caaagactca aaatcgtgac 1080 tacaaggaca acttatggtg cacttattgt aagaagggca cgccatacgc gtgagcggtg 1140 ctggaaacta catggaaaac caccaagtcg agagtgggga cagaagggag aacaaccaag 1200 taataatggt caagcccatg ttacaacagt acaacagaat ggagcaacac cgcaagagat 1260 aggcagtctt aatcaagaag aagttgagag gatgaggtct cttatttgca accttgacaa 1320 accagcaggt actggttcat tggcgtattc aggtaagttt ccattctcta ttggattaaa 1380 tgtctcggat ataacctttg ccaactcctg ggtcattgac tcaggtgcta ccggccatat 1440 gactcattca ccaaacattt tttccacata tttctcatgt tcaagcaata gaaaaatagc 1500 cacagccgat ggctccttga ccaccgtagc aggtatagga gatgtcaaaa taagcccatc 1560 actgatatta aaaaatgttc ttcatgtccc taggttaacc atgaacctca tttctatcca 1620 aaaactcact caagatttac attgcaatgt ggttttttat catagtcatt gtgtatttca 1680 ggaygaggat tcggggagga tgattggaca tgctagagaa cgggatggac tctactatct 1740 caaagcacca agtcaatcaa acattaccaa aggcaaatca tctcattctt ttgtctcaga 1800 agatttttca ttcaataaag aaaaagtttg gcttcatcat cgccgacttg gacatccatc 1860 atttagggtt attaaaattc tgtttccttc tttatttaaa ggtctagacg tcgaacattt 1920 tcattgtgaa gtgtgtgaac ttgctaaaca caaacgtgtg tcttttccaa ttagcaataa 1980 aagaagtttt attccttttt atctcataca cagtgacatt tggggtcctt ctcctattcc 2040 taacattact ggggctaaat ggtttgtttc attcattgat gattgtactc gagtcacttg 2100 gatttttttg ctcaaacata aatttgatgt cagtactgtc cttccaaatt tttgttctat 2160 gattaagact caatttggag tcaatatcaa aagatttagg tcggataatg ctaaggatta 2220 tttcaatcaa gtcctaactc catactttca gagggaagga ataatacatg agtcatcttg 2280 tgtcaacact ccacagcaaa acggagtggc agaaagaaaa aacggtcacc ttcttaactc 2340 aacccgatcc ttcatgtttc agaaaaatgt gcctaaatcc ttttggggag aagcagttct 2400 tacaactgct catctcataa atagattgcc ttctaggatc ttgggattca aaagtccaat 2460 ggacatactt tcaacattct atccaaacct acacactaca aacaatcttg ttcctaggat 2520 atttgggtgt gtggcatttg tccatgttca taatcaaaac agggggaagt tagatccacg 2580 ggcattaaaa tgtgtttttt tgggttattc ttcaactcag aaagggtata agtgttacca 2640 tcctccatga aaaagattct atgtctcagt agatgttact ttccatgaac aagaatctta 2700 tttcactatt tcttatcttc agggggaraa tttggtactg gaagataagg atatggggga 2760 ttttttattc cttgatctgc catcactccc cttgtcaaaa caatctcgtc ccactgatcc 2820 tttattraaa ccttacctaa attgcccaat cagcctgaaa cctgtgcctg aaaatccaaa 2880 atctgcccct gaagaatgtg agatttgaca aagtgttttc gaggaagaag acaggtgtcc 2940 ctgaatctgt gcaagtccaa gacttcaacc caaattctga gaatgaggta acaatttcta 3000 atccttcatt gcaatctaaa tctcatgtga acaatgatga ccaggacctc cctattgttg 3060 ttaggaaagg gattagagaa tgcacaaatc aacctttata ccctcttaca cacttcctat 3120 cctttaaaaa attttcacca tctcatagag ccttccttgt tagcctaaac actatttcta 3180 tccctaccac cgtatccgag gctttaaccg atgaaaaatg gaaacaagct atgaatgtgg 3240 agatggaggc attagaaaaa aacaaaactt gggagttggt aaaattgccg acaggaaaga 3300 aacccgtggg gtgtaaatgg gtttatactg tgaaatatag agcagatgga tcaatagaaa 3360 gatacaaggc tagattggtt gccaagggtt atgctcaaac ctatgggatt gattaccaag 3420 aaacttttgc tccagtcgca aagatgaaca ctgttagagt cttgttgtca ttaacagcta 3480 attacaattg ggatttgcag caatttgatg tcaagaatgc ttttttgcat ggagaactag 3540 aggaagaaat ttatatggag gtcccgccag gttatgacaa taatttagct gctcatattg 3600 tatgtaaatt aaaaaaggcc ttgtacggac ttaagcaatc accacgagca tggtttggaa 3660 gatttgcaag agtgataata accatgggat ataggcaaag tcaaggagat catatgttgt 3720 tcattaaaca ctcatcttcg aggagactca cagctctctt ggtgtatgtc gatgacataa 3780 tagtgacagg aaacgatgac aaggagagac aggttctaaa tcaatgtttg gctaaggaat 3840 ttgagatcaa ggcattaggg aggttgaaat atttcttggt attgaggtgg ctcactctaa 3900 gcaaggcatt tttatctccc aacagaagta tgttacagat cttctcaaag aaactggcaa 3960 gaccgcatgc aaaccagcaa gtactccaat agatccgaat cttagactcg aagaggcaga 4020 aaatgatgct acagtagata aagaaatgta tcaacgcttg gtgggaaggc tcatttatct 4080 atctcataca cgactagata tagcatatgt agtgagtgtg attagtcaat tcatgcataa 4140 gtccaaagga agctcatctg caggtagctt atcgagtgtt acaatatctc aaagggacac 4200 caggtaaagg tattctgttc aaaaggaatg gtgggttagt acttgaggca tacacagatg 4260 ctgactatgc cggctcaact attgacagaa ggtcaacttc tggatattgc acctttcttg 4320 gtggaaatct cgtgacatgg atgagtaaga aacagaatgt ggtagcgcgg tctagtgcgg 4380 aggcagaatt ccaagcaatg gctcagggtg tgtgtgaact tctatggttg aatatcgttt 4440 tagaagactt aaagattgaa tgggatggcc caatgagact ctattgtgat aataaatctg 4500 caatcagcat agctcacaac ccggtacagc atgatcgaac gaagcacatt gaaattgaca 4560 gacacttcat caaagagaag ttggataatg gatggatatg tacaccttat gtgtctacac 4620 atggtcaact tgccgatata cttaccaaag ggctaagtag ttcagtgttt caaagctttg 4680 tatccaagct gggaatggtg aatacctatt caccagcttg agggggagtg tgggaaaacg 4740 tgaatta 4747 // ID CALYPSHAN_LTR_MT repbase; DNA; DCOT; 1930 BP. XX AC CT573400; XX DT 25-JAN-2007 (Rel. 12.01, Created) DT 25-JAN-2007 (Rel. 12.01, Last updated, Version 1) XX DE LTR of LTR retroposon, CALYPSHAN_MT, from Medicago truncatula. XX KW Gypsy; LTR Retrotransposon; Transposable Element; LTR; retroposon; KW repeat; Interspersed; terminal; CALYPSHAN_LTR_MT. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-1930 RA Shankar R., Jurka J.; RT "CALYPSHAN_MT: LTR retroposon from barrel medic."; RL Repbase Reports 7(1), 4-4 (2007). XX DR [1] (Consensus) XX SQ Sequence 1930 BP; 641 A; 365 C; 254 G; 670 T; 0 other; tgtcataccc caattttaga ccgtttaaaa tctcttgtcc gtattttaaa tttggtcaca 60 ttcccattta ttcgttgtct ttttaccatt taaagttcgt gtttcttgtc tttagtcatt 120 caaaaagttt tatttttacg ttaaatcaac gttcgcattt cacaacaatt taaaaccgtc 180 tcactttcat ttttacgacg catagtcttt ttttaatcgt aacgatcacg tcaaaaaaga 240 gaaggcctaa tcgcatttta aaaggcgttt tttttattaa tcattgcaaa caaaatttcg 300 gcagggagga tactttgaag tacctcatgt cagatttcga agggactttt tattttcttt 360 tttaggctag tttgtttatt attattattt tttttattta ttttattttt tattttttat 420 tttttatttt tttttagaaa aaacaaagaa atgaaagtca ctcacgtgac tttcttcctt 480 cttttttctt ttctttttta tttttttatt tttttatttt attcattttg ttttttttta 540 tttatttatt tatctttttg tcaaatcttt ttctccaagt ctcagctgca ggggcatttt 600 tggtcatttg tttgtaccag agccaaccct agtttgtcac tataaaaaca ctgtcaatca 660 ttgggaaatg ggccagaaat cactgttcac gtcagaaaaa tcagcagcaa ttcacaaaca 720 ctcattttct acttttccaa ccctttttca gatcaaacac taaaaattac aaagaaataa 780 catgaacata tgaagaaagt tcatagattc aaaaatccag caacacaaaa ctaaaacaaa 840 aaaaacctca aatcaatcca tacacacaaa tcatcatcca aacagatatg aaacaaagag 900 aaacgaaccg gagcagaaaa ccagaaccga accggaacaa gaaaagcttg cgccgaaccg 960 gaacaaaaaa acctgcgccg aaccggaaaa gggaggaaca accgaaccgt agcaagggaa 1020 aacaagagaa ccggaccgga aaagctagga aaggaggaga ccggaaaaag agcatgcaca 1080 tttaatttta tcattatttt attttgtcat tgacttagta tgtataaata gggaattgat 1140 gtaattttat ttcttgcatt ttattttggc ttaaaggcct tagggttgta tttaggaatt 1200 gatgtaataa tgtaggtaac acaagcaccg acacatgcac cgacactacc acattttatt 1260 taccgctttc cgttaatttt ttacgacgtt acgttagtgt tcaccgttag tttagaaaaa 1320 aatcattttc acaaaaaaat caaataagtc aaattcaaaa atcttttttc ttagcaacat 1380 tttctcttta ttttcttaat caaattttta atcaatttta attcaacttc aatcattttc 1440 aaaatttaaa atcaatcaac ctcactcatt tcttttatct catgccttga ggcctctttc 1500 tcttcttaaa accattttca aaaaaatctt aaaatcaacc taacccacca aagaaatttt 1560 tgaggtgaac tacattggtt ttgatccctt tctttaaggg tatgtaggca taggattttt 1620 atccttccaa atcaaataaa aataaccaaa aaacatactt cttctccctc cattctttca 1680 cttaaacatt aggcaataat ttttcaaata aacaagtagc ttagcacaag ataatctagg 1740 taagaggttc ctatggaata ccatagacgc ttaggatgct agcaccttcc cttcgcgtaa 1800 ccaacccccg aatccaaagt ctcgaaaggg tttttactca ttttttccct tcccaagaat 1860 aaaaatcgag agttcaaaga tcgacgattc aaatcaatta atggtttgac atccgaaaat 1920 cgcgagcaca 1930 // ID Copia14-VV_LTR repbase; DNA; DCOT; 268 BP. XX AC AM483491; XX DT 16-AUG-2007 (Rel. 12.08, Created) DT 16-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; LG_I; Copia14-VV_LTR. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-268 RA Xu Z., Wang H.; RT "LTR_FINDER: an efficient tool for the prediction of full-length RT LTR retrotransposons."; RL Nucleic Acids Res 35(Web Server i), W265-W268 (2007). XX RN [2] RP 1-268 RA Kohany O., Jurka J.; RT "LTR retrotransposons from grapevine."; RL Repbase Reports 7(8), 725-725 (2007). XX DR Genbank; AM483491; Positions 2439 2706. XX SQ Sequence 268 BP; 75 A; 34 C; 49 G; 110 T; 0 other; tggttgtaaa ttaatggctt gtgttttgtt gtgtatagta aattatgcta gtttaggaca 60 gtttgtttgt aacagccaga attcctagaa ttaggttaat ttagttagtt tcctattttg 120 tttatcccat aaatcatggg atttgatata gcctagtaat tagtttcctt ttctatagct 180 aagacttttc tgtataaagc tagtgtagtt ttctgagaag gaaggagaat aaaattattc 240 cacaattctg ctctctcaat ttacgtca 268 // ID RAM9B_I repbase; DNA; DCOT; 3894 BP. XX AC . XX DT 22-NOV-2006 (Rel. 11.11, Created) DT 05-DEC-2006 (Rel. 11.11, Last updated, Version 1) XX DE Internal region sequence of RAM9B LTR retroposon, from Medicago DE truncatula. XX KW LTR Retrotransposon; Transposable Element; Nonautonomous; LTR; KW Interspersed repeat; retroposon; internal region; RAM9B_I. XX OS Medicago truncatula OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; OC Medicago. XX RN [1] RP 1-3894 RA Shankar R., Jurka J.; RT "RAM9B: LTR retroposon from Barrel Medic."; RL Repbase Reports 6(11), 594-594 (2006). XX DR [1] (Consensus) XX CC The translate of internal region exhibits intact reverse CC transcriptase, integrase and Arginine methyltransferase CC containing zinc finger domains. XX FH Key Location/Qualifiers FT CDS 211..3849 FT /product="RAM9B_I_1p" FT /translation="MVDVRRPKKKDAAEIVCFNCGEKGHKSNVCPEEIKKC FT VRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGT FT QTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGE FT MVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLE FT YNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSI FT ENQAVIDRLPVVCEFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR FT MSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQ FT LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTA FT FRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS FT KTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVD FT PSKVEAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGK FT TFVWDVHCENSFSELKKRLTTAPVLILPKSDEPFVVYCDASKLGLGGVLMQ FT EGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDH FT KSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHM FT SAMMVREFELLEQFRDMSLVCEWSPQSVKLGMLKIDSEFLKSIKEAQKVDV FT KFVDLLVARDQTEDSDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS FT LSIHPGATKMYHDLKKIFWWSGLKRDVAQFVYSCLVCQKSKVEHQKPAGMM FT VPLDVPEWKWDSISMDFVTSLPNTPRGNDAIWVIVDRLTKSAHFLPINISF FT PVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSS FT AYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSI FT GMAPFEALYGRRCRTPLCWFESGERVVLGPEIVQQTTEKVQMIQEKMKASQ FT SRQKSYHDKRRKDLEFQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQI FT LERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNL FT TVETLPVRIDDRKVKTLRGKEIPLVRVVWTGATGESLTWELESKMLESYPE FT LFA" XX SQ Sequence 3894 BP; 1060 A; 571 C; 1065 G; 1198 T; 0 other; tgcatcaagt tcgagaacgg tttgaggccc gacatcaaga gggcgattgg ataccaacag 60 ctgagagttt ttccggattt ggttaatagc tgcaggatct atgaagagga tacgaaggct 120 cactacaagg tagtgaatga gaggaagggc aagggacagc agagtcgtcc taagccgtac 180 agtgcccccg ctgataaagg gaaacagaag atggtcgatg ttaggcggcc taagaagaag 240 gatgctgcag agattgtgtg tttcaattgt ggtgagaaag gccacaaaag caacgtctgt 300 cctgaggaaa tcaagaagtg tgtccggtgt ggcaagaaag gtcatgttgt agctgattgc 360 aatcgtacgg acattgtgtg ctttaattgc aatggagagg gtcacattag ttcacagtgt 420 actcagccta agagggcgcc gactactggt agggtctttg ctttgactgg tactcagaca 480 gagaatgagg atcgtttgat cagaggtact tgctatatta ataatactcc tttagttgct 540 attattgata ctggtgctac gcattgtttt attgctttcg attgtgtttc tgctttgggt 600 cttgatttgt ctgatatgaa tggagagatg gttgtcgaaa ctccagctaa gggttcggtg 660 actacttctc tcgtatgttt gaaatgtcct ttgtctatgt ttggtcgtga ttttgaaatg 720 gatttagttt gtctaccttt gagcggtatg gatgtgattc tgggtatgaa ctggttagag 780 tacaaccacg ttcttattaa ttgttttagc aagtcagtgc atttctcttc cgtcgaagag 840 gaaagtggtg cagagttttt atctactaag cagctgaagc aactggaacg cgacggtatc 900 ttgatgtttt cgttaatggc tactttatct attgagaatc aagcagtgat tgataggtta 960 ccggtggtgt gtgaatttcc tgaagttttt ccagatgaga ttcctgatgt gcctccagag 1020 agagaagttg agttttctat tgatcttgtt cctggaacga agccggtctc gatggcacct 1080 tatcgtatgt ctgcttctga gttatctgag ttgaagaaac agttggaaga cttgcttgag 1140 aagaagtttg ttagaccaag tgtttcacct tggggagcgc cggttttgct agtaaagaag 1200 aaagatggta gtatgcggtt gtgtattgat tatcggcagt tgaacaaggt aactatcaag 1260 aataggtatc cacttccgag aattgatgat ttgatggatc agttagtggg tgcacgagtt 1320 ttcagcaaga ttgatttgag atcaggttat caccagatta aagtaaaaga tgaagatatg 1380 cagaagacag ctttcagaac gcgttatggt cactatgaat ataaagttat gcctttcggt 1440 gtgaccaatg cacctggagt gtttatggag tatatgaatc gcatcttcca tgcatttttg 1500 gatcggttcg tggttgtgtt tatcgacgat attttgattt actccaagac tgaagaagaa 1560 catgctgagc atctgaagat tgtcttgcaa gtgttgaaag agaagaaact ttatgctaaa 1620 ttgtctaagt gtgaattctg gttgaaagaa gtgagttttc ttggccatgt tatttctggt 1680 gatggtattg cagtggatcc gtctaaagtt gaagcggtat cgcaatggga gactcctaag 1740 tcagttactg agattagaag cttcttgggt ttagctggtt actatagaag gtttattgaa 1800 ggattttcta agttagctct tccgctaacg cagttgactt gtaaaggtaa aacttttgtg 1860 tgggacgttc attgtgagaa cagtttcagt gaattgaaga agcgtttgac gactgctcca 1920 gtgttaattt tgccgaagtc agatgaacct tttgtggtgt attgtgatgc gtccaagttg 1980 ggtttaggag gtgtacttat gcaagaaggt aaagtggtag cttatgcttc aagacagttg 2040 agaattcatg agaagaatta tcctacgcat gatctcgagt tggcggctgt agtctttgta 2100 ttgaagatat ggagacatta cttgtatggt tcgaggtttg aggtgtttag tgatcacaag 2160 agtttgaagt atttgttcga tcagaaggaa ttgaatatga ggcagcgaag atggctagaa 2220 ttgttgaagg attatgactt tggtttgaat tatcatccag gtaaagctaa tgttgttgca 2280 gatgccttga gtaggaagac attgcatatg tccgctatga tggtcagaga gttcgagtta 2340 cttgaacagt ttagagatat gagtttggtt tgcgaatggt cacctcagag tgtgaaactg 2400 ggtatgctga agattgatag tgaatttctg aaaagtatca aggaagcaca gaaagttgat 2460 gtaaagtttg tggacttgtt ggttgctaga gatcagactg aagacagtga ttttaaaatc 2520 gatgatcaag gtgtgttgag attccgagga agaatttgta tcccagacaa tgaagagatt 2580 aagaagatga ttcttgaaga gagtcataga agtagcttga gtattcatcc gggagctacg 2640 aagatgtatc atgatttaaa gaagattttc tggtggtctg gtttgaaacg agatgtggca 2700 cagtttgtgt attcctgttt agtttgtcag aagtcgaaag ttgagcatca gaaacctgct 2760 ggaatgatgg tacctttaga tgtgccagaa tggaaatggg atagtatatc catggatttt 2820 gtgacgagtt tgccgaatac tcctagaggg aacgacgcaa tttgggttat tgttgataga 2880 ttgacgaagt cggctcattt tctaccgatt aatattagtt tccctgttgc ccagttggca 2940 gagatttata tcaaggagat tgtgaagttg catggtgttc cttcgagcat tgtatcagat 3000 agagatccaa gatttacttc tagattttgg aaaagtttgc aagaggcttt gggttcgaag 3060 ttgagattga gttcggcgta tcatccacag acagatggtc agtcggagag gacaattcag 3120 tcgctagagg atttgttgag aatttgtgtt cttgagcaag gaggaacttg ggatagtcat 3180 cttccgttga tcgagttcac atacaataat agttatcatt ctagtattgg aatggcacct 3240 ttcgaggctt tgtatggtcg gagatgcaga actccgttgt gttggtttga gtcaggtgaa 3300 agagtggtct taggaccaga gattgttcag caaactactg agaaagttca gatgatccaa 3360 gagaaaatga aagcgtcgca gagtcgacaa aagagttatc atgataagcg tagaaaagat 3420 cttgagtttc aggaaggaga ccacgtgttt ttgagagtca ctcctatgac tggtgtagga 3480 cgtgctttga agtcaaagaa gttgaccccg aagttcattg gtccgtatca gatattggaa 3540 agagttggaa cggtggctta ccgagtgggt ttaccgccgc atctttcgaa tttgcacaac 3600 gttttccatg tgtcgcaact tcgaaagtat gttccggatc catctcatgt aatccaaagt 3660 gacgatgtgc aagttagaga caaccttacg gtagagactt taccggtgag gattgatgat 3720 cgtaaagtga agacgttgag aggcaaggag atacctctcg tgagagtcgt ttggacggga 3780 gcgactggtg aaagcttgac gtgggagctt gagagtaaga tgctggagtc ttatccagag 3840 ttgtttgctt gaggtaaatt ttcgaggacg aaaatctttt aagtggggga gagt 3894 // ID SORE1_GM repbase; DNA; DCOT; 431 BP. XX AC AB033271; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Glycine max gypsy-type retrotransposon SORE1_GM, partial DE sequence. XX KW retrotransposon; GYPSY superfamily; reverse transcriptase; KW partial sequence; SORE1_GM. XX OS Glycine max OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; OC Glycine. XX RN [1] RP 1-431 RA Kumekawa N., Ohtsubo E., Ohtsubo H.; RT "Identification and phylogenetic analysis of gypsy-type RT retrotransposons in the plant kingdom."; RL Genes Genet. Syst 74(6), 299-307 (1999). XX DR Genbank; AB033271; Positions 1 431. XX SQ Sequence 431 BP; 123 A; 79 C; 112 G; 117 T; 0 other; agaggatgtg tgtggactat cgagatctaa accgagccag tccaaaggat aattttcctt 60 taccgcacat cgacattctc atggctaaca tggccagttt tgccctattc tctttcatgg 120 atggattttc gggttataat cagataaaga tggcaccaga ggatatggaa aagacaactt 180 tcattactct atggggaacc ttctgctata aggtgatgtc gtttgggctg aagaattttg 240 gggcaaccta ccatcgggcc atggtggcat tattccagga catgatgcac aaggagatcg 300 aggcctatgt ggatgaaatg atcgcgaaat caagaatgga ggaggaacac ctagtcaatt 360 tgcaaaattt gtttgggcaa ctacgtaaat acaggttgag actgaatccc aggaagtgtg 420 tgttcgggtt g 431 // ID Copia25-VV_LTR repbase; DNA; DCOT; 169 BP. XX AC . XX DT 31-AUG-2007 (Rel. 12.09, Created) DT 01-OCT-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from grapevine: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia25-VV_LTR. XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; OC rosids; Vitales; Vitaceae; Vitis. XX RN [1] RP 1-169 RA Obukhanych T., Jurka J.; RT "Copia25-VV."; RL Repbase Reports 7(9), 783-783 (2007). XX DR [1] (Consensus) XX CC Long terminal repeats (LTRs) of the Copia25-VV family are 97% CC identical to each other. The 5'LTR contains a 18-bp internal CC deletion. The deposited sequence represents the 3'LTR. XX SQ Sequence 169 BP; 51 A; 26 C; 25 G; 66 T; 1 other; tgttagctgt atatatctgt acataccata atttggttgt ttcctttctt gtaggctgat 60 tcttagggat aataccttcc taatttagga ctctcaattg tatatatata caagtattat 120 tcctctaata aasatacaag gaattgagaa ataccttgat tcggttaca 169 //