ID TCN1-I repbase; DNA; FNG; 5192 BP. XX AC . XX DT 30-MAR-2005 (Rel. 10.03, Created) DT 01-SEP-2005 (Rel. 10.03, Last updated, Version 2) XX DE C. neoformans LTR retrotransposon - internal consensus. XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW reverse transciptase; internal portion; TCN1-LTR; TCN1-I. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-5192 RA Goodwin T.J. and Poulter R.T.; RT "The diversity of retrotransposons in the yeast Cryptococcus RT neoformans."; RL Yeast 18(9), 865-880 (2001). XX RN [2] RP 1-5192 RA Loftus B.J., Fung E., Roncaglia P., Rowley D., Amedeo P., RA Bruno D., Vamathevan J., Miranda M., Anderson I.J. et al.; RT "The genome of the basidiomycetous yeast and human pathogen RT Cryptococcus neoformans."; RL Science 307(5713), 1321-1324 (2005). XX RN [3] RP 1-5192 RA Gentles A. and Jurka J.; RT "C. neoformans non-LTR retrotransposon TCN1."; RL Direct Submission to Repbase Update (15-MAR-2005). XX DR [3] (Consensus) XX CC 501 bp LTR deposited as TCN1-LTR. XX FH Key Location/Qualifiers FT CDS 164..1462 FT /product="TCN1-I_1p" FT /translation="MSGPSTRSGRAVEKVEKGKEVEHTLDDDHNPAGSFNT FT NPQSDPFTADNTSNDTQTQLEMMRNHIARLEQQKEELTHKLEESKVERQMF FT DNSEDNEGENEQELDEEDEEPRSSRDLSAQTPYPEVKREYSRQRTSVPSSR FT PQEPKVSQPEYYHGQYTKLSTFITQVTMVITLQPSRFPTETSKVLYAGSFL FT RDTPFLWFQPFVTIDPQPKFMLDFKKFCAELRKNFGDPDEEQTAERQLNTV FT RQQGSVSSYLATFMRYATLVQWNDEAKKACFYKGLKDDIKDELARLPKAKS FT FKNLQDMAIRIDSRRYERVLAKRDQQPKALFNATRSDYTRTSYNNNHPNNF FT RRFSAANSMPIRSTTANTTFNKEVTPAVNLRAAFVPSSARITRRGRLTPEE FT YQRRKDHNLCLYCADKNHQVAKCPVVPSQQSNTTLPSKN" FT CDS 1468..4947 FT /product="TCN1-I_2p" FT /translation="MLLSAKVEEGSREQERTIKPANTDSCEYLQTLEDNNK FT NNKNQLTIDFLFHNNVYQALIDSGASTNFIDKRFVQTFNLKTTKIEDSIPL FT YLFNAAGQRTIIEEEANILVNFQKPFGHTLLRLLITDIGSYPIVLGITWLQ FT EHNPSISWETLSIHPPVSQTTSANLAMVITNDKPPKENTDAEIVPKEYHQY FT LDVFDKKSADTLPEHRSFDHHIPLEEGKNPPFGPIYNLSETELEALREYLD FT ENLKKGFIRPSESPAGAPILFVKKKDGSLRMCVDYRGINKITIKNRYPLPL FT IAELLDRLKSAKVFTKIDLRGAYNLLRIKAGEEWKTAFRTRYGHFEYLVMP FT FGLTNAPASFQHLMNHNFRDLLDIFVIIYLDDILIYSPDLETHQSHVIQVL FT DRLRQTQLYAKASKCEFHQTSVEFLGFVVSDQGLSMDTKKVKSITEWPTPR FT NLRDTQSFLGFCNFYRRFIKNYSSIAKPLIDLTKKDLPFVWEEPQRTSFEA FT LKKSFTSVDLLRHYDPTKQLILETDASDYAIAGILSHEIDKKLEPVAFFSH FT KMLPAELNYPIHDKEMLAIVSAFKEWRHYFEGARETIRVYTDHRSLEYFMT FT TKQLNRRQARWSEFLADFDFNIIYRPGVQGTKPDALTRRHDYHPLEKGSSL FT TTAANPQNFQTLLRPGQYLGTATTGLDRLEISSPIKSLLKTGLETDESAKP FT FLDKANHPSEAHPYTRDDEGLLRYGESFYVPANNELRTLVTKECHDALTSG FT HPGRRKTIQLIRRHYWWPGLKGFVNHYIDSCDLCCRTKTRRHQPYGELKSL FT PIPPYPWSSVSMDLIEQLPPSHGYNTILVIVDRLTKMALFIPTTTSLNAEE FT LAQLYVTHVFSKHGIPTSIVSDRGSEFTSRFWRAFTQLLHIELELSTAFHP FT ETDGQTERVNQVLEQYLRLYTDYKQKEWAPLLPVAEFTYNNTPHSSTTMSP FT FFANKGYHPRASFTPDDNVPIFSPPARASITDLSKLHEHLKIEMSKAQESA FT ALQFDKHRAPLPEYTIGDKVWLSARNIKTKRPTKKLDHRYLGPYTIIARVS FT SHAYRLELPKSMRIHDVFHVQLLEKYIENEIPGRTQVAPSPIEVEGDLEYE FT VECILDHRFYRKRRQFLIKWLGYSAEHNSWEPETALENASEIVDQYKSTHR FT L" XX SQ Sequence 5192 BP; 1606 A; 1487 C; 945 G; 1154 T; 0 other; gtaaatattg atcttccaca cttgtggttg gttggtatag acttcaagta ccttttacct 60 tcgacacata cgtataccct tatacaactt catcaacaac ttcatcaaca acctcagcca 120 cctataacct cataccacca cttcgtatac catatcctat atcatgtcag gtccatccac 180 tcgtagtggt cgagctgtgg aaaaggtcga aaaaggcaag gaagtagaac ataccctcga 240 tgacgaccac aatcccgcgg gttcattcaa caccaatcct caatccgatc catttaccgc 300 cgacaacaca tcaaacgaca cccaaaccca actcgagatg atgcgcaacc atattgcaag 360 acttgagcaa cagaaggaag agttgacgca taagttggaa gagagcaaag tcgaacgaca 420 gatgtttgat aatagcgaag ataatgaggg cgaaaacgaa caagaattgg atgaagaaga 480 cgaagaacct agatcaagcc gcgacctgtc agcgcaaaca ccatacccag aagttaaaag 540 ggaatacagc cgacaacgca cctcagtacc ctccagtaga cctcaagaac cgaaggtatc 600 ccaacccgag tactaccatg ggcagtatac caagctctca acctttatca ctcaagtgac 660 aatggtgatt accctccaac cttctcgttt ccctaccgag acctccaaag tcctatacgc 720 cggatctttc ctccgagata ccccattctt atggttccaa cccttcgtaa ccatcgatcc 780 ccagcccaag tttatgctgg acttcaagaa attttgtgcc gaattaagga agaacttcgg 840 agatccagac gaagaacaga cagcagaacg acaactaaac actgttcgtc agcaaggttc 900 tgtatcctca tacctcgcaa cctttatgcg ttatgccacc ttggttcagt ggaacgacga 960 agcgaagaag gcttgcttct acaagggctt gaaggatgac atcaaagacg aacttgccag 1020 actacccaaa gccaagtcat tcaagaacct ccaagacatg gcaatccgca tcgacagccg 1080 tcgatatgaa cgggtattag caaagcgaga ccagcaacca aaggcgcttt tcaacgccac 1140 ccgaagcgac tacacccgca cctcttacaa taacaatcac cccaacaact tcagacgttt 1200 ctctgcggcg aatagcatgc cgataaggtc taccactgcc aacaccacct tcaataaaga 1260 ggtgacgccg gcagtcaacc tgagggctgc atttgtccca agttcagcta ggataaccag 1320 acgtggacgt ctgactccag aagaatatca gaggcgaaag gatcataacc tctgcctcta 1380 ttgcgccgac aaaaaccatc aagtcgccaa gtgcccagtg gtcccctcgc aacaatccaa 1440 tactactctc ccttcaaaaa actagatatg ctcttgtctg ccaaagtcga agaaggtagc 1500 cgggaacaag agcgtactat caaaccggcc aatacagact cctgcgaata tctccaaact 1560 ctcgaagata ataacaaaaa caacaaaaac caactcacaa tcgactttct ctttcacaac 1620 aatgtttatc aagctttaat cgattccggt gcctctacaa acttcatcga caaaagattc 1680 gtccagacct ttaacctcaa aaccacgaaa atagaagatt cgatcccatt atacctattc 1740 aacgctgcgg gtcagcgaac tataattgaa gaagaagcca acatcctggt caacttccag 1800 aaaccattcg gacacacctt actccgactc ctcataaccg acatcggctc ctaccccatc 1860 gtcttaggta taacctggtt acaagagcac aatccgtcca tcagctggga aacactttcc 1920 atacacccac ctgtatcaca gacgacgagt gccaacttag ccatggtcat caccaatgac 1980 aaacctccaa aagaaaacac cgatgccgaa atagtaccta aagaatacca tcaatatcta 2040 gatgtattcg acaagaaaag cgccgataca ctcccagaac ataggtcttt cgaccaccat 2100 atccctctcg aagaaggaaa gaacccacct tttggtccca tatacaatct ctccgaaaca 2160 gaacttgaag ctctccgcga ataccttgat gagaatctta agaaaggttt tatccgaccg 2220 tccgaatcac cagccggagc acccatactc tttgtcaaaa agaaagacgg atcgcttagg 2280 atgtgtgtcg attaccgggg aatcaacaag atcaccatca agaatcgcta tcctctacca 2340 ttgatcgccg agctcctaga tcgactcaaa tcagccaaag tattcaccaa gatcgacctg 2400 cgaggagcct acaatttact tcgcattaag gcaggcgaag aatggaaaac agctttccgt 2460 actcgctatg ggcatttcga atatttggta atgccgtttg gcctcaccaa tgcccctgca 2520 tccttccaac atctcatgaa ccacaatttc cgcgacttgc tagacatatt tgttatcatc 2580 tacctcgacg acatcctcat ctacagccca gacttggaga ctcaccagtc acacgtcata 2640 caagtcctag atcgcctccg ccaaacccaa ttatatgcca aagcttcaaa gtgcgagttc 2700 catcaaacct cagtagagtt cctaggtttc gttgtcagcg atcaaggtct atcaatggac 2760 accaagaaag taaagtctat cacggaatgg ccgacacctc gcaatctccg tgatacccaa 2820 tccttccttg ggttctgtaa cttctaccga aggttcatca agaactactc tagtatcgcc 2880 aaacctctta tcgacttgac aaagaaggac ttaccctttg tatgggaaga acctcaacga 2940 acatctttcg aagcactcaa aaagagtttc acctctgttg atctcctacg tcattacgat 3000 ccgaccaagc aactcatcct tgaaaccgac gcctccgact atgccatcgc aggtatctta 3060 tcacatgaaa tcgacaagaa actcgaacca gttgctttct tctctcacaa aatgttgcct 3120 gccgagttaa actatcctat tcacgacaaa gaaatgttag caattgtttc agcattcaaa 3180 gaatggcgac attacttcga aggtgctaga gaaaccattc gtgtctacac cgaccacaga 3240 agcctggagt actttatgac taccaagcaa ctcaatcgac gacaggcgcg atggtctgaa 3300 ttcctagccg actttgactt caatatcatc taccgaccag gcgtacaagg cacaaagcct 3360 gacgcactca cccgaagaca tgattatcat ccactcgaga aaggctccag ccttactact 3420 gctgccaatc ctcagaattt ccagactctc cttcgccctg gacagtactt gggtactgcc 3480 acaaccggac tcgatcggtt ggaaatatct tcgcccatca agtcattgtt gaaaaccggt 3540 ctagaaaccg atgaatcagc aaaaccattc ttggacaaag ccaaccatcc ctccgaagct 3600 cacccatata ctcgagacga tgaaggactc ctcagatatg gcgaatcatt ctatgtccca 3660 gccaataacg agctacgcac cctcgtcacg aaagaatgcc atgatgcact cactagtggg 3720 catcccggac gacgcaagac tatccaactc atccgacgcc attactggtg gccaggccta 3780 aaaggcttcg tcaatcacta cattgattcc tgcgatcttt gttgcagaac taagacaaga 3840 cgtcatcagc cctatggcga actcaagtct ctacccattc ccccatatcc ctggtcatct 3900 gtatcgatgg acctcattga acaacttccc ccatcacacg gctacaacac catccttgtg 3960 atcgtagacc gactcaccaa gatggctctc tttatcccca caacgactag cctcaacgcc 4020 gaggaactcg cccaattata tgtcacccac gtcttctcca agcatgggat tccgaccagt 4080 attgtatcag atcgtggatc tgaattcaca tcccgctttt ggcgagcatt cacacaactc 4140 ctacacatcg agttagaact cagtacagct tttcacccag aaacagatgg acaaaccgaa 4200 cgagtgaacc aggtcttaga acaatatctg cgcctttata ccgattataa gcaaaaggaa 4260 tgggcaccgc tactcccagt tgcggaattc acttacaaca atacgcccca ttcgtccact 4320 accatgtccc ccttctttgc caacaaaggg taccatccca gggcatcgtt tacccccgat 4380 gacaacgttc ctattttcag cccacctgcc agagcctcca tcaccgactt gagcaagctc 4440 cacgaacacc tcaagataga aatgtccaaa gcacaagaga gtgcagcact acagtttgat 4500 aagcaccgtg ccccacttcc cgaatatact atcggcgaca aagtctggct atctgcccgt 4560 aacatcaaaa cgaaacgacc caccaagaaa ttagatcacc gctatctcgg tccctacacc 4620 attatcgcgc gcgtttcttc ccacgcgtat cgccttgagt tgccgaaatc aatgcgtatc 4680 cacgacgtct tccacgtcca attgcttgag aaatatattg agaatgagat cccagggcga 4740 acacaagtcg caccatcacc tatcgaagtc gaaggtgacc tagaatacga agtcgagtgc 4800 atcctcgatc atcgatttta ccgaaaacgc cgccaattcc ttatcaagtg gctcggctac 4860 agtgccgaac acaacagttg ggaacccgaa accgctctag aaaatgcttc agagattgtt 4920 gatcagtata agtcaacaca ccgattatag gaaaccaagt tcatagtaac agttcagaga 4980 aattattcca aacattgcga aaacattttt agttcataga cttagttcat aaatttttca 5040 aagacaaatt cttcacaacc agttcataga aatttattcc atagctccag caaattttag 5100 ttacaagtac acaacagaac aagccgcaga cggcatgacg gagcgaccgt cttcgaaggg 5160 gggggtgact gtcacgagcc tgcacaaaga ag 5192 // ID MAGGY_LTR repbase; DNA; FNG; 253 BP. XX AC L35053; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE MAGGY_LTR is a long terminal repeat from MAGGY, a gypsy-like LTR DE retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; MAGGY_I; KW MAGGY_LTR; endonuclease; gag gene; homologue; POL gene; protease; KW reverse transcriptase. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-253 RA Farman L.M., Tosa Y., Nitta N. and Leong A.S.; RT "MAGGY, a retrotransposon in the genome of the rice blast fungus, RT Magnaporthe grisea."; RL Unpublished (1994). XX DR GenBank; L35053; Positions 1 253. XX SQ Sequence 253 BP; 51 A; 87 C; 59 G; 56 T; 0 other; tgtcacagac ctgaaggaca gccactgggc tgtcgcttag tcatgacccc tgtcacgtga 60 aggcgcgagg gccgagcgcc tcgcgcgcgt atatctacgc gaaatctctg cagtctccga 120 tatgtagctc ctcgagctac gtcttcgtca acaaccacct gctaccctgt acctggaaga 180 ctagatagcc aatatactct gtcctgttac ctgatcgccc gcacctacct gtccgccctg 240 cctgcccgtg aca 253 // ID TY4 repbase; DNA; FNG; 6270 BP. XX AC S50671; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Gag homolog, TY4B=protease, integrase, reverse transcriptase, and DE RNase H domain containing protein {retrotransposon Ty4} DE [Saccharomyces cerevisiae=yeast, C836, Transposon, 6270 nt]. XX KW Non-LTR Retrotransposon; Transposable Element; retrotransposon; KW TY4. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-6270 RA Stucka R., Schwarzlose C., Lochmuller H., Hacker U. RA and Feldmann H.; RT "Molecular analysis of the yeast Ty4 element: homology with Ty1, RT copia, and plant retrotransposons."; RL Gene 122(1), 119-128 (1992). XX DR GenBank; S50671; Positions 1 6270. XX SQ Sequence 6270 BP; 2509 A; 983 C; 1090 G; 1688 T; 0 other; tgttggaacg agagtaatta atagtgacat gagttgctat ggtaacaatc taatgcttac 60 atcgtatatt aatgtacaac tcgtatacgt ttaagtgtga ttgcgcctat tgcagaagga 120 atgttaaacg agaagctcag acaatactga agctgtgtta aagacctatt agttgaacat 180 gttatggtag gtacatatat gaggaatatg agtcgtcaca tcaatgtata gtaactaccg 240 gaatcactat tatattggtc ataattaata tgaccaatcg gcgtgtgttt tatatacctc 300 tcttatttag tataagaaga tcagtactca cttcttcatt aatactaatt tttaacctct 360 aattatcaac atggcgaccc cagtgagggg tgaaacaaga aatgttattg acgacaacat 420 ttctgcgcgg attcaatcga aagtcaaaac aaatgatact gtcagacaga cgccattaag 480 aaaagtttct attaaagatg aacaggtgag acaatatcaa agaaatttaa ataggtttaa 540 aaccatacta aatggtttaa aggcagaaga ggaaaaactt tctgaggctg atgatattca 600 gatgctagct gaaaaattat taaaactcgg agaaaccatt gacaaggttg agaataggat 660 tgtggatcta gttgaaaaga tacaattatt ggaaacaaac gagaacaata atatattaca 720 tgaacatata gatgctacag ggacttacta tttattcgat acgttaactt caaccaacaa 780 aagattctac cctaaggatt gtgtttttga ttataggact aataatgtcg agaacattcc 840 tattctctta aacaatttta aaaaattcat caagaaatat caatttgatg atgtctttga 900 aaatgatatc atagaaatcg atcctcgtga aaatgaaatc ttgtgcaaga taatcaaaga 960 aggactcggt gaaagtttag atatcatgaa cacaaataca actgacattt ttaggataat 1020 cgatggttaa aaaaacaaat atagaagttt gcatggtaga gatgtcagaa ttagagcctg 1080 ggaaaaggtt ttggttgata caacatgtag aaattccgca ttgttaatga ataaacttca 1140 aaagttggta ctaatggaaa aatggatttt ttctaaatgc tgccaagatt gtcctaatct 1200 aaaggattac ctacaagaag ctatcatggg aaccttacat gaatccttaa gaaattctgt 1260 gaaacaacgt ttgtacaaca ttccacatga cgtaggaatt gatcacgaag aatttctaat 1320 caatactgtt attgaaacag taattgattt gagcccaatt gcagacgatc aaatagaaaa 1380 tagctgcatg tattgcaaat ctgttttcca ttgctcaatt aactgcaaaa agaaaccaaa 1440 tagggaactt aggcctgact cgaccaattt ctcaaaaacc tattatctac aaggtgcaca 1500 gagacaacaa ccacttaagt ccagtgcaaa acgaacaaaa gtcttggaac aagacacaaa 1560 aaaggtcgaa caaagtgtac aacagcaaaa aactggtaat tattgatacc ggttccggcg 1620 taaacattac caatgacaaa accttactgc ataattacga agacagtaat cgcagtacac 1680 gattttttgg tattgggaaa aacagttcag tgtctgttaa agggtatggc tatataaaaa 1740 tcaagaatgg tcacaacaat actgacaata agtgtctatt aacttactat gtaccggaag 1800 aagaatccac tataatcagc tgttatgact tagccaagac aaccaaaatg gttttaagtc 1860 gaaaatatac cagattggga aacaaaatca taaaaattaa aaccaagata gttaatggtg 1920 tcattcacgt aaaaatgaac gagttaattg aacgcttcct ctccgatgat tcaaaaataa 1980 atgcaataaa acctacttct tctcctggat ttaaactaaa taaaaggtct attaccttgg 2040 aagatgctca taaaagaatg ggccatacag gaattcaaca aattgaaaat tccataaaac 2100 ataatcatta tgaagaatcc cttgacttaa tcaaagaacc aaatgaattt tggtgtcaaa 2160 cctgtaaaat ctctaaagcc acgaaacgaa atcattatac cgggtctatg aataatcata 2220 gtactgatca tgaaccaggc tcatcatggt gcatggatat atttggccct gtatcaagtt 2280 caaacgcgga cactaaaagg tacatgctta ttatggtgga taacaacacg agatattgca 2340 tgacctccac acacttcaat aagaatgctg aaactatttt agctcaagtt agaaagaata 2400 ttcagtacgt ggaaacacaa tttgacagga aagtcagaga aattaattca gacagaggta 2460 ctgaattcac aaatgatcag atagaagaat attttatttc aaaaggaata catcacatac 2520 ttacttctac acaagatcat gctgctaacg gaagagcaga aagatacata agaacaataa 2580 taactgatgc aacaacactc ctaagacaaa gtaacttaag agtaaaattt tgggaatacg 2640 cagtaacttc tgctaccaat ataagaaatt gcctggaaca caaaagtaca ggtaaactac 2700 cattgaaggc aatctcacgt caacctgtga cagtgagatt aatgtcattc ttaccatttg 2760 gcgaaaaagg aataatttgg aatcataatc acaaaaaatt gaaaccatct ggacttcctt 2820 ctataattct atgcaaagat ccaaatagtt atggatacaa attctttata ccatccaaaa 2880 ataaaattgt cacatctgat aattatacaa ttcccaacta tacaatggac ggtagagtaa 2940 gaaatactca gaatattaac aagagtcatc aattcagttc acataatgat gatgaagaag 3000 atcaaatcga aacggtcaca aacttatgtg aagctttgga aaactacgaa gatgataata 3060 aaccaattac tcgcctggaa gatttgttca cagaggaaga gttatctcaa atagactcaa 3120 acgcaaaata cccatctcct agtaataacc tagaagggga cttggattac gtattttctg 3180 atgttgagga atctggagat tatgacgttg aatctgaact ttcaacgaca aataattcaa 3240 tctcaactga taaaaacaaa attttgtcaa acaaggattt taattcagaa cttgcatcga 3300 ctgaaatatc catcagtgga atcgataaga aaggattaat aaatacaagt catattgatg 3360 aagataagta tgatgaaaaa gtacacagaa ttccatcgat tatacaagag aaactggtag 3420 gaagtaaaaa tactattaaa atcaatgacg aaaacaaaat ctccgacaga attcgtagta 3480 aaaacattgg gagtatttta aacactggac tcagtagatg tgtagatatc accgatgaat 3540 ctattactaa caaagatgag tcaatgcaca acgcaaaacc cgaactaatt caggagcagt 3600 taaaaaaaac aaatcatgaa acttcgtttc ctaaagaagg gagcattgga acaaatgtaa 3660 aattccgaaa tacaaacaat gagatttctt taaaaacagg cgatacgagt ttaccaataa 3720 aaactttaga aagcattaac aatcaccata gtaatgatta ttccacaaac aaagttgaaa 3780 agtttgagaa ggaaaatcat catccgcccc cgattgagga cattgtggat atgagtgatc 3840 aaactgatat ggaatcaaac tgtcaggatg gtaataactt aaaagaatta aaagtcaccg 3900 ataaaaatgt accaactgac aatggaacaa atgtgtcacc aaggttggaa caaaatattg 3960 aacgatctgg atcaccagta caaacagtta ataaaagtgc cttcttaaac aaagaattca 4020 gttctttgaa catgaaaaga aaacggaaaa gacacgataa aaacaatagt ctaacaagct 4080 atgaattaga aagagataag aagcgttcaa aaaagaatcg agtgaaatta attccagata 4140 atatggaaac agtttcagca ccaaaaattc gagccatata ttataatgaa gctatttcaa 4200 aaaatcctga cctcaaagaa aaacatgaat acaaacaggc atatcataaa gaattacaga 4260 atttaaaaga tatgaaggta tttgatgtcg atgtgaagta cagtagatca gaaattcctg 4320 ataatttaat agtacccacc aacacgatat tcacaaagaa aagaaatggg atttataagg 4380 ctaggatagt ctgcagaggt gatactcagt caccagacac ttacagtgta ataactacag 4440 aatctttaaa tcacaatcat attaagatat tcttaatgat gcaaacaaca gaaatatgtt 4500 tatggaccct ggatatcaat catgcattcc tatatgctaa attggaagaa gaaatataca 4560 tcccacatcc gctgatagga gatgtgtacg tcaagctaaa taaggcgtta tatggtctaa 4620 aacagagtcc taaagaatgg aatgatcatc taagacaata cttgaatgga attggactga 4680 aagataactc ttatactccg ggattatacc aaaccgagga taaaaatcta atgattgcag 4740 tctatgttga tgactgcgta attgcggcaa gcaatgaaca gagattggat gaattcataa 4800 acaaattgaa aagtaatttt gaactgaaaa ttacaggaac attaatagac gatgtactcg 4860 atacagatat attaggaatg gatctagtat acaacaaaag acttggtact atcgatttaa 4920 cattaaaatc attcataaat agaatggata aaaaatacaa cgaggaattg aaaaagatta 4980 gaaaaagttc aattccgcat atgtcaactt ataaaataga tcctaagaaa gacgtactgc 5040 aaatgtcaga agaagagttt agacaaggtg ttctaaagct acaacaatta ctaggtgaac 5100 taaactatgt cagacacaaa tgcagatacg acattgaatt tgctgttaag aaagtggcta 5160 gactagtaaa ttacccacat gaaagagtct tttatatgat ttacaaaata atccagtact 5220 tggttcggta taaagatatt ggaatacact atgaccgaga ctgtaataaa gacaaaaagg 5280 ttattgctat aactgatgca tcagttggat cagaatatga tgctcaatca aggattggag 5340 ttatattatg gtacggtatg aatattttta atgtttattc taacaagagc acaaacagat 5400 gtgtatcatc aacagaagca gagcttcatg ccatttatga aggctatcga gactcagaaa 5460 cgttgaaggt aacattaaag gagctaggag aaggagacaa taatgacatt gtcatgatca 5520 ctgtgaaggt aacattaaag gagctaggag aaggagacaa taatgacatt gtcatgatca 5580 ctgactcaaa gccagccatt caaggattaa atcgcagcta tcaacaacca aaagagaaat 5640 tcacttggat aaaaactgaa ataataaaag aaaaattaaa gagaagtata actgttaaaa 5700 ttaccggcaa aggtaatatt gctgatttac taacaaacca gtatcagcat ctgattttaa 5760 aagatttata caagtattaa aaaataaaat aacatcacag gatattttgg cctcaacaga 5820 ctattgataa ttaattaatg aagttctaaa cacacaatga atatctgttg aagtacaata 5880 atatatcttt aagggagcat gttggaacga gagtaattaa tagtgacatg agttgctatg 5940 gtaacaatct aatgcttaca tcgtatatta atgtacaact cgtatacgtt taagtgtgat 6000 tgcgcctatt gcagaaggaa tgttaaacga gaagctcaga caatactgaa gctgtgttaa 6060 agacctatta gttgaacatg ttatggtagg tacatatatg aggaatatga gtcgtcacat 6120 caatgtatag taactaccgg aatcactatt atattggtca taattaatat gaccaatcgg 6180 cgtgtgtttt atatacctct cttatttagt ataagaagat cagtactcac ttcttcatta 6240 atactaattt ttaacctcta attatcaaca 6270 // ID TF2 repbase; DNA; FNG; 4220 BP. XX AC L10324; XX DT 07-FEB-1997 (Rel. 2.01, Created) DT 07-FEB-1997 (Rel. 2.01, Last updated, Version 1) XX DE Internal part of TF2 retrotransposon, protease, reverse DE transcriptase, RNAse H, integrase gene, complete cds. XX KW Gypsy; LTR Retrotransposon; Transposable Element; LTR; RNase H; KW TF2; TF2 retrotransposon; integrase; protease; KW reverse transcriptase. XX OS Schizosaccharomyces pombe OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; OC Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-4220 RA Weaver C.D., Shpakovski V.G., Caputo E., Levin L.H. RA and Boeke D.J.; RT "Sequence analysis of closely related retrotransposon families RT from fission yeast."; RL Gene 131(1), 135-139 (1993). XX RN [2] RP 1-4220 RA Boeke D.J.; RT "TF2."; RL Direct Submission to Genbank (04-FEB-1993)Jef D. Boeke, Mol. RL Biol. Genetics, Johns Hopkins University, Baltimore, MD 21205. XX DR GenBank; L10324; Positions 349 4568. XX CC LTRs of TF2 are named as LTRTF2. CC TF2 contains a single ORF encoding a protein with regions CC similar to protease, reverse transcriptase, RNase H (RH) and CC integrase from other retrotransposons and retroviruses. CC CDS 167..4168. XX SQ Sequence 4220 BP; 1629 A; 766 C; 667 G; 1158 T; 0 other; aataactgaa ctcttgtgat ctacaattaa ctccttttag gaaaaaggaa ttattgaata 60 aatatatatc ataaatatat atatttctct ccttctgggt tcaaaggaga aggaactttg 120 gaaggactgt tatccctttt gaaatctccc aaagggaaac atatacaatg tcctacgcaa 180 attatcgtta tatgaaagca agagcaaaac gatggagacc agagaatttg gatggaattc 240 aaacatcaga cgaacattta ataaaccttt ttgcaaaaat attatcgaag catgtaccag 300 agatagggaa attcgatcca aataaggatg ttgaaagtta catttcaaaa cttgatcaac 360 actttactga atacccttca ttattcccaa atgagcatac taaaagacag tatacattga 420 atcacctaga agaattagag caacaattcg ctgaacgcat gttttctgag aatggaagtc 480 ttacatggca agaattactc agacaaacag ggaaagtaca aggatccaac aaaggtgatc 540 gtttaactaa aacatttgaa ggttttagaa atcaattgga caaagttcaa tttataagga 600 aactcatgtc aaaagcaaat gttgatgatt tccatactcg cttgtttata ttatggatgc 660 tgccatattc cttaaggaaa ttaaaggaaa gaaattactg gaaatcagaa atcagtgaaa 720 tttatgactt tttagaggac aaaagaacag cctcgtatgg taaaactcac aagcgttttc 780 aaccgcaaaa taaaaatcta ggaaaagagt ccctttcaaa gaaaaataac accactaata 840 gcagaaacct gaggaagaca aatgtttcga gaatagaata ctcatctaac aaattcctaa 900 atcatactag gaaacgttac gaaatggtat tacaagctga acttccagac ttcaagtgct 960 caataccctg tctaatcgat acgggcgctc aagcaaatat tataacagaa gaaactgttc 1020 gagcacataa actgcctacc agaccctggt caaaaagtgt gatatatggt ggagtttatc 1080 caaataagat taatcgcaaa acaataaaac ttaacataag tctaaatgga atatcaatca 1140 aaacagaatt cttggttgta aagaaatttt cgcatccagc tgctatctcc ttcacaacat 1200 tatatgacaa taacattgaa atatctagca gtaaacacac gctctctcaa atgaacaaag 1260 tttcaaatat tgtcaaggaa cctgagttac cagatatcta taaagaattc aaagacatta 1320 ctgcagaaac caatacggaa aagctaccaa agccaataaa agggttagaa tttgaagttg 1380 aactaactca agaaaactac agattaccta tcagaaatta cccgctacca ccgggaaaaa 1440 tgcaagctat gaatgatgaa attaatcaag gattaaaaag tggaattata cgagaatcta 1500 aagccattaa cgcctgtcca gtaatgttcg ttccgaaaaa ggaaggcacc ttgagaatgg 1560 tggttgacta caaaccttta aataagtatg tcaaacccaa tatatatccg ttaccactta 1620 ttgaacaatt acttgctaaa atacaaggtt ctacaatttt tactaaactt gacctcaaaa 1680 gtgcctatca cttgatacga gtaagaaaag gagatgaaca taaacttgct tttcgctgtc 1740 ctcgtggagt ttttgaatat ctagtaatgc cttatggcat atctacagct ccagcacatt 1800 ttcaatactt tatcaataca atacttggtg aagccaaaga atcacatgta gtatgttata 1860 tggatgatat tttaattcat tcaaaatcgg aatctgaaca tgtaaaacat gttaaagacg 1920 ttctacagaa attgaaaaat gcgaacttaa ttatcaatca agcaaaatgt gaatttcacc 1980 aatcacaagt aaaatttata gggtatcaca tttcggaaaa aggatttacg ccttgtcaag 2040 aaaatataga caaagtctta caatggaagc aacctaagaa tcgtaaagaa ttacgacaat 2100 ttctaggttc tgtcaattat cttaggaaat tcattccaaa gacatcacaa ttaacacatc 2160 cactcaataa tcttttgaaa aaggatgtac gctggaaatg gacaccaaca caaacccaag 2220 cgatagaaaa cattaaacaa tgtttagttt ctcctccggt gctacgacac tttgatttca 2280 gtaaaaagat tctactggaa actgatgctt cagatgtcgc tgtaggagcc gtattgtctc 2340 aaaaacatga tgatgataaa tactatcctg ttggatacta ttcagcaaag atgtctaaag 2400 cacaattaaa ttatagcgta tcggacaaag aaatgcttgc aatcattaag tctctcaaac 2460 attggagaca ctatttagaa tccactatcg aacctttcaa aattttaaca gaccatcgaa 2520 acttaattgg tcgcattact aacgaatccg agcctgaaaa caaacgttta gctcgttggc 2580 aattattttt acaagacttc aactttgaaa ttaactacag acctggatca gcaaatcaca 2640 tagctgatgc cttatccaga attgttgacg aaacagaacc aattccaaaa gattcagaag 2700 acaatagtat caactttgtt aatcaaatct cgataaccga tgattttaaa aaccaagtgg 2760 ttacagaata tacgaatgat acaaaattgt tgaatttact aaacaatgaa gacaaacgag 2820 tggaagagaa tatccaactc aaagatggct tactaattaa cagtaaagac caaatcttat 2880 tacctaatga tactcagctg actaggacaa ttattaaaaa gtatcatgaa gaaggtaaat 2940 tgattcatcc aggcattgaa cttcttacaa acattatatt acgtagattt acgtggaaag 3000 gaataagaaa acaaatacaa gaatatgtac agaactgcca tacatgtcaa ataaacaaat 3060 ctaggaatca taaaccttat ggacctttac aaccaattcc cccatcagaa agaccttggg 3120 aatctttatc aatggatttt attacagctt taccagaatc atctggttat aatgcacttt 3180 tcgtggtagt tgaccgattt tcaaaaatgg caatcttagt accttgtacg aaatccatta 3240 cagcagagca aacagctcga atgtttgatc aacgagttat tgcttatttc ggcaatccaa 3300 aagaaatcat tgcagataat gatcatattt ttacttccca aacgtggaaa gatttcgcac 3360 ataaatataa tttcgttatg aaattttcgt taccatacag accacaaact gatggacaaa 3420 ctgagcgtac aaaccaaact gtggagaaat tactaagatg tgtatgtagc acacatccaa 3480 atacatgggt agatcatata tccctagtgc aacaatctta caacaatgcg atacattcag 3540 caactcaaat gacacctttt gagatagtac atcgctattc accagcttta tcacctttag 3600 agttacctag ctttagtgac aaaactgacg aaaactctca ggaaacgatc caagtatttc 3660 aaacagttaa agaacacttg aatacaaaca acataaagat gaaaaagtat ttcgatatga 3720 aaatacaaga aattgaagaa tttcaacctg gagacctagt tatggtcaaa agaacgaaaa 3780 caggttttct tcataaatcc aataaattag cacctagttt tgcaggaccg ttctatgtgt 3840 tacagaagtc gggtccaaac aactatgaat tggatcttcc agattcaatc aagcacatgt 3900 tttcatctac ttttcatgtt tctcacctag aaaagtatcg acataattca gaactcaatt 3960 acgctaccat tgatgagtct gatattggaa caattcttca tatcctagaa cataaaaaca 4020 gagaacaagt actctactta aatgtcaagt acatttcgaa tctaaatccg agtactatta 4080 tgtcaggatg gactacatta gctacagcgc tacaagcgga caaagcaatt gtcaatgatt 4140 atattaaaaa caataatcta aatatctgag aacatatgac ttatcctcag atttacatag 4200 aaaatcttgg ggagggcaat 4220 // ID FOT1_CA repbase; DNA; FNG; 1804 BP. XX AC AF259783; XX DT 11-MAY-2005 (Rel. 10.05, Created) DT 11-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Candida albicans transposon Cirt1 transposase pseudogene. XX KW DNA transposon; Transposable Element; DDE transposase; Cirt1; KW FOT1_CA. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-1804 RA Fan J. and Chaturvedi V.; RT "Structure, distribution, and evolution of Fot1-like transposable RT genetic elements, Cirt1 and Cirt2, in the human pathogenic RT yeast."; RL Unpublished. XX DR Genbank; AF259783; Positions 1 1804. XX CC 40 bp terminal inverted repeats. ORF interrupted by stop codons. XX FH Key Location/Qualifiers FT CDS 116..1696 FT /product="Cirt1ORF" FT /translation="MPKTKEVKQEVDETAIQNAIQDFKSGKFKTIAETARF FT YGLVPNTLRFRYNGGLPRKLAHTKEQLLSPEQEDEIVNWIVDSDADGHGRS FT RSDIIAFAELMLGTSESSPKIHESWYDRFKSRHDEIHTVEGRSISSLRAKA FT VTYEEILKYYRDYDLIVRQHKISHENIFNYDESRFIMGKGKSSRVAVPSYK FT NRTYVQSTEGRDSCTVIEAISMSGEALVPAVIFKGGSLRTGWFKDDAPDWY FT YTASKRGFTTNWLSLC*LKDIFVPQVKEKTSQGKVMLIMDGHGSHKTDEFR FT ETCEKNNIIPMYLPPHSTHLLQPLDLGIFGPVKSRYKTKLSKLAGILEDTP FT VRQRLFIMRYHEARQEKLTKERIIKSWETAGLNPFDPDKVLKSSQLIVKRI FT NDEIDQAEKDRERRAKERLRESEPSLEKLTKSQMIEKYTKDVKMLKSRICF FT LEAMNARLQFDLNIATAAAQNKKPEGVSSAIPMDENKGFKQVMGYIKEIRK FT DPKKKRRRKALGDITNTSKGSNSYTNFSGS*" XX SQ Sequence 1804 BP; 639 A; 310 C; 383 G; 472 T; 0 other; tacctcacgc ccggtggaaa attctctcct gggaaactta cgcgcaaaaa taaaaaaatg 60 taaacaatcc tttgaccaca ctcttctcct attcctcttc aatgtgccac cttacatgcc 120 aaaaacaaaa gaagtaaagc aagaagttga tgaaactgcc attcaaaatg ctatccaaga 180 ttttaaaagt gggaaattta aaacaattgc cgaaacagct cggttttatg gtcttgttcc 240 taacacattg aggtttcgtt ataatggagg attaccaagg aaattagccc atacaaaaga 300 gcaactcctt tctcctgagc aagaagatga aatagttaac tggattgttg attcagatgc 360 agatggacat ggacggagtc gtagtgacat aatcgcattt gctgagctta tgttaggtac 420 tagtgaatct tcccctaaaa tccatgagtc ttggtacgat cgcttcaaat caagacacga 480 cgagatccat acagttgaag gaaggagtat atcaagtttg agagcaaaag cagttacgta 540 tgaggagata ctaaaatatt atcgtgatta cgacctgatt gttagacaac ataaaatttc 600 tcatgagaac atatttaatt acgatgaatc taggttcatt atgggtaagg gtaaaagttc 660 aagagtagct gtacccagct acaagaatag aacctatgta caatccacag aggggaggga 720 tagctgtact gttattgagg caattagtat gtctggagaa gctttagttc ctgctgtaat 780 ttttaaagga ggttccctca gaactggctg gtttaaggat gatgctccag actggtatta 840 cacagcatct aaaaggggat ttaccacgaa ttggttatct ttgtgttgat tgaaggatat 900 ttttgttccc caagtaaaag aaaaaacaag tcaaggaaaa gtcatgctta taatggatgg 960 gcatggaagc cacaaaactg atgagttcag ggaaacatgt gagaagaata acattattcc 1020 tatgtacttg cctcctcatt ccacgcattt gttgcagcca ttggaccttg gtatatttgg 1080 cccagtaaaa tctcggtata aaacaaaatt gtcaaaattg gccggcattc tagaggacac 1140 tccagttcgg caaaggctat ttataatgag gtaccatgaa gcaagacaag aaaagctaac 1200 aaaggagaga atcatcaaat cttgggaaac ggcaggatta aatcccttcg accctgataa 1260 agttttgaaa tcatctcaac tcatagttaa acgaatcaat gacgaaatag atcaagctga 1320 aaaggataga gagcgtcgtg ctaaagaacg tcttagggaa agcgaacctt ccttagagaa 1380 attgactaaa agccaaatga ttgaaaaata tacaaaagat gttaaaatgc ttaaatccag 1440 aatttgtttc ctagaagcaa tgaacgcacg gttacaattt gatcttaata ttgctacagc 1500 agctgctcag aacaagaaac cagaaggagt gagctccgct ataccaatgg atgagaataa 1560 gggttttaag caggtaatgg gttacatcaa agaaatccgc aaagacccga aaaagaaaag 1620 gagaagaaag gcactagggg atattacgaa tactagtaag ggttccaata gttataccaa 1680 ctttagtggc agttaagtag atagttgtag agttaaccta caatataagt gttttattag 1740 tcgtgtaaag ctttgaaaaa aaaataagtt tcccaggaga gaattttcca ccgggcgtga 1800 ggta 1804 // ID copia-2-I_AN repbase; DNA; FNG; 4788 BP. XX AC . XX DT 09-DEC-2003 (Rel. 8.11, Created) DT 09-DEC-2003 (Rel. 8.11, Last updated, Version 1) XX DE Internal portion of copia-2_AN LTR retrotransposon - a consensus DE sequence. XX KW LTR retrotransposon; COPIA superfamily; copia-2-I_AN; KW copia-2-LTR_AN; internal portion. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-4788 RA Kapitonov V.V. and Jurka J.; RT "copia-2_AN, a family of copia LTR retrotransposons in the RT Aspergillus nidulans genome."; RL Repbase Reports 3(11), 199-199 (2003). XX DR [1] (Consensus) XX CC The 1412-aa copia2_AN-Ip polyprotein is encoded by ORF1 CC (pos. 187-4422). XX SQ Sequence 4788 BP; 1531 A; 1205 C; 993 G; 1059 T; 0 other; ggtcatgagc cctctacgct gaaggaatac gatttgtttg ctagatatag atacgcagaa 60 tcgattcttg acgctctgag caacttgcta tacaaaattt tagacacccc gcacctgtac 120 gagggggggt agcaacagtt ttggggatta ccccagaatc aggatcataa ggcacctttc 180 gctaggatgc cgccaaaagc ctcacgaggc accaagtcaa acgacgtacc gtttcaaatg 240 acaacaaggc atcgtacgta cgagccggaa acaccagtat ctgctgacaa ccagatatcg 300 aacgattcga cggacgaaga ccaaccggac gaaccaacca caatggaaga tatgcgagca 360 ggattactcc gtcaactacg agatgaacta cgagaagaac tacgtgagga gatggctcag 420 caattgcgca gcgagatcag gcatgagata cgcgcagagc aacaacatca gtcccctacg 480 cagcaactac accaggaaat caatcagaat gcctcctatg gtcgaaatac agacattcaa 540 caacgagacc ttatatattg cgaaaaacaa gacattcgga aattggccaa atcaaaattt 600 ggtacccaag catcaatact gcttaatggt cgatcaaact atacagcatg gcgcgattct 660 atgcttatgg atacctatat gattgaagca aaggacatcc tcgatgaaac caagccaccc 720 gatggcagca atgaaatcga catcgcccgc tgggaaacga agaatgaaat tttgcataca 780 aggattctcc agtcaacggc aaggcacgta cgacaaacaa tcagttggaa aggctctaca 840 cttgcatccg agctatgggc tagaataaca tcaacatatg gcctatcaat ggccgaggag 900 cgccttatga ctgtcaaagc cctgcttgat atcaacccac aaggcaatta cccagcgatg 960 gtacgggatt ttcaaagaat agctgcaaag attaaagaaa tgaaactatc cctggatgat 1020 gttatccatg acatttttat ctgttctcta ggccaatggc agcagaactt cgtacgtaca 1080 aaactagacg agttctattc ctgcggccga ggaccaatca aaaacctaga tattgacacc 1140 tttgcggatc aattggttgc tcgatcatca tcttccaaca acaaatatat cccccaggaa 1200 ccacaagaat tcaaactcga gcccagatat cggataatcc ttacagaacc aaaggactct 1260 tcccggacga agcgcgacgg tcaagaccaa aagccggcac gtacgaaaac cctctgtcaa 1320 gcttgtggca aaggatatca taagcccgat gattgttgga cattgcatcc cgaaaaggcg 1380 cctaaacgcc atggaaacca agcatctgga acctccaatg ataataagaa ccaacaacca 1440 acaggacagg agcttgttct acggaaccat ccgcaagcca actcgattgc aatcgtacca 1500 gccaaagagc cggaaaatga tgaggagccc caatggctct tggatactgc tgcagccttc 1560 catatatcca ataaatatca tgttttcatc aatctccgag gccacaaagc atatataaat 1620 gacgccggtg gtcgtacgca tcagattatt ggaatcggaa ccgcattagt ttatggggta 1680 gagattccag acgtccggta tgcgccaaca acaacagcag acctactgtc attcagccaa 1740 ttggatgacc aggattttga tgtatccacg caaggcactg tcaacaagaa gcacttctat 1800 attacatcac ccacaggagc ttctcttgat gccttcaaag agcaaaatac atgcctatat 1860 caaatcaaac cagttgcata cgcaatacag ccaatcctac acgcaaagga cacccaaaaa 1920 gaaacaaata acataatacc tacagcaact atggaggaat ggcaccagca cctatcccat 1980 gtccatttac aagccatatt aaagatggca caacagaaaa tcatcaaaat caaagggcca 2040 aaaaccttgg ctttctgcga catctgtcga caggctaagg agaggagaaa gagcaccaag 2100 gagccagcct cacgcgccac aaagatcctg gtgcgaatct atattgatat tgcaggaggg 2160 ggagcaatat tggactgcaa ggataagcaa gcccctcccg gcatcagaaa tattcgatat 2220 ttcttgttga ttactgatga tgcaacccaa tatcaatggg tttataccct tcgaaccaga 2280 gatgaggcta ttcccacctt ccagggatgg cttgagcata tcaaaaacca aggatacagc 2340 ccaccagctt tcgtacgaag tgatcgcgaa tttctaaccg aacacgtcaa gaagctctgc 2400 caaacctatg gcctaatttg ggagccaacc gctgcagact ccccatggca agatggcgtc 2460 agtgagcgcg gaatacagac ggttttacaa tatacaaggg caatgttata tgactccgga 2520 ttaccacgat ggctatggcc acaggctcta caaacagctg tctatcacat gaaccggtta 2580 cctacaagag ttcccttgta caatgatcga cggcctatgg caccaaccag cgatccggaa 2640 atccagccat gtgcccattt tacgccctat tccgcctgga ccaatggtga caccgatatc 2700 aagcatcttg tcaaatttgg gtcacctgct tggatgcacc tacatggagc ttcaaaatat 2760 gctggcaagc caaccagtaa gattgaccca aaggccaaga aggtccatgt tgttgggtat 2820 caaggccgcc atatctatgt tatttgggac cctgaaatca accaactacg cgataccagt 2880 gatatctcca tcaaggagga gtttaacccg ccacagagca agccgtacga agctgccaaa 2940 gctcccgaag ctgctaaagc tctcgaaact gtcaaacctg gcgaaactgc cgaagctgca 3000 gaaccaaaaa ccaatgaaga ccttcttata caggatatat cagatattac ctccagagaa 3060 gagctatacc gacctgccaa aggatttgct atccaaaaat ctgtcgaatc acctctacct 3120 gagcccaaat cgtacaatga ggctatcaaa ggccctgaat cagctcaatg gcatgcagca 3180 atgcaagaag agattaatac cttgaaacag aaacaatgtt gggatttgat ccgaaaatct 3240 gacatgcctg ctggcgcacg cgccatacca ggaagatggg tttataaaaa gaagcttaat 3300 cctgacaact ccatccgtta caaagcacaa tgggtaatca gggggaatct tcttgataaa 3360 tcagaatttg aaggagcaac gtacgcccca gttgttgatc ctattacttc acgaatcttg 3420 tttggtgtca gcgcccaaaa aggctggcat attattcagg cagatgcagt tctagcattt 3480 ctaaatgcaa agttaaaagg ccaaccgatt tatatgcatc aaccacttgg attcgctgaa 3540 ggggagccag ggaccctagt ttgcctgctc cgccaatcac tatatggcct aaccccgtcc 3600 gcgcgcctat ggtacgatga tctacgagca tatcttgaat ctataggatt taaggtttcc 3660 ccgcatgacc caggcctatt cgtacatgtt acagaaaagc tctatatcac cacccatgtt 3720 gatgacttca tgattgttgg tgaaaaggcc caaaacgccg tacaagcgct cgaaagcttg 3780 aaatcccgat ttgaaattaa agaagcgccg gaattcaagc gatatctagg catgaatatc 3840 aaaacaacgc ctacaggcat ccacctgtca caggaggatc aaattgatga cattatcaac 3900 tcttttaggc ttcataatgc ccatcctacc aaatcacccc ttgatcctgg aacagttatc 3960 gatgatgctc cagatccaaa aatcaatatc aaagaatacc agcacggtac tggcagcttg 4020 cagtatctag ctacaaaaac taggccagat atcagccgag ccgcctgctt tcttgctgaa 4080 tttaatacag cacctacagc caaatgctgg gcagctctta tacatattat caaataccta 4140 aaaggcaccc gcagtctagg aatcagatat caacatgatc ctgcagccaa tatcaagccc 4200 cctaaagcct ttagtgattc tgattggggt ggacctcata caaaagcacg tcggtcagtt 4260 ggcagatatg ttttcaaact tgccggagga ccaattgctt ggcaatcaaa gcgccaaacc 4320 tgcgtagcaa ccagctccaa tgaagctgaa tatattgctg catccgaagc ctcgcgcgaa 4380 gcctattgga tatactctcc tcaaacttca aaggacagac aaaagttcat caaaatccag 4440 agactcgcga aattatgaag gatcttcgat tatttgatga ccagcatgca cctggtatcc 4500 tattatatat ggacaacaaa ggagctattg atcttacaat gtccaacata caaaccaaaa 4560 gatcaaagca tattgacatc cgctaccatt acacccgtga tatggtcgac caaggcatca 4620 tccatatcaa gcagatccct actgccgaaa tggttgcaga tggctgtacg aagcctctgg 4680 gatctgaagc tcactcccat ttcattcgtt tattaggtct ccacaacgat gattgatatt 4740 ttcatgtaat taggcccgct ggtgatgaca atctcgctcg aggggggg 4788 // ID TY repbase; DNA; FNG; 6536 BP. XX AC X02417; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Yeast Ty transposable element Ty-pY109 near tRNA-Lys1 gene. XX KW DNA transposon; Transposable Element; TY; direct repeat; enhancer; KW Inverted repeat; reverse transcriptase; transposase; transposon; KW Ty1 transposon; unidentified reading frame. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-6536 RA Hauber J., Nelboeck-Hochstetter P. and Feldmann H.; RT "Nucleotide sequence and characteristics of a Ty element from RT yeast."; RL Nucleic Acids Res 13, 2745-2758 (1985). XX DR GenBank; X02417; Positions 1 6536. XX SQ Sequence 6536 BP; 2331 A; 1398 C; 1046 G; 1759 T; 2 other; agatctctta ttctatataa gagaagtata gaatacagcc ttattagtaa tattaaacat 60 tgctcatatg attatcatga aagcatatta tgatttcaat gtcatgactc acatccgtat 120 tgttggaata aaaatccact atcgtctatc aactaatagt tatattatca atatattatc 180 atatacggtg ttaagatgat gacataagtt atgagaagct gtcatcgagg ttagaggaag 240 ctgaagtgca aggattgata atgtaatagg ataatgaaac atataaaacg gaatgaggaa 300 taatcgtaat attagtatgt agaaatatag attccatttg aggattccta tatcctcgag 360 gagaacttct agtatattct gtatacctaa tattatagcc tttatcaaca atggaatccc 420 aacaattatc taattaccca catatatctc atggtagcgc ctgtgcttcg gttacttcta 480 aggaagtcca cacaaatcaa gatccgttag acgtttcagc ttccaaaatt caagaatatg 540 ataaggcttc cactaaggct aactctcaac agacaacaac acctgcttca tcagctgttc 600 cagagaaccc ccatcatgcc tctcctcaac ctgcttcagt accacctcca cagaatgggc 660 cgtacccaca gcagtgcatg atgacccaaa accaagccaa tccatctggt tggtcatttt 720 acggacaccc atctatgatt ccgtatacac cttatcaaat gtcgcctatg tactttccac 780 ctgggccaca atcacagttt ccgcagtatc catcatcagt tggaacgcct ctgagcactc 840 catcacctga gtcaggtaat acatttactg attcatcctc agcggactct gatatgacat 900 ccactaaaaa atatgtcaga ccaccaccaa tgttaacctc acctaatgac tttccaaatt 960 gggttaaaac atacatcaaa tttttacaaa actcgaatct cggtggtatt attccgacag 1020 taaacggaaa acccgtacgt cagatcactg atgatgaact caccttcttg tataacactt 1080 ttcaaatatt tgctccctct caattcctac ctacctgggt caaagacatc ctatccgttg 1140 attatacgga tatcatgaaa attctttcca aaagtattga aaaaatgcaa tctgataccc 1200 aagaggcaaa cgacattgtg accctggcaa atttgcaata taatggcagt acacctgcag 1260 atgcatttga aacaaaagtc acaaacatta tcgacagact gaacaataat ggcattcata 1320 tcaataacaa ggtcgcatgc caattaatta tgagaggtct atctggcgaa tataaatttt 1380 tacgctacac acgtcatcga catctaaata tgacagtcgc tgaactgttc ttagatatcc 1440 atgctattta tgaagaacaa cagggatcga gaaacagcaa acctaattac aggagaaatc 1500 cgagtgatga gaagaatgat tctcgcagct atacgaatac aaccaaaccc aaagttatag 1560 ctcggaatcc tcaaaaaaca aataattcga aatcgaaaac agccagggct cacaatgtat 1620 ccacatctaa taactctccc agcacggaca acgattccat cagtaaatca actactgaac 1680 cgattcaatt gaacaataag cacgaccttc atcttaggcc agaaacttac tgaatctaca 1740 gtaaatcata ctaatcattc tgatgatgaa ctccctggac acctccttct cgattcagga 1800 gcatcacgaa cccttataag atctgctcat cacatacact cagcatcatc taatcctgac 1860 ataaacgtag ttgatgctca aaaaagaaat ataccaatta acgctattgg tgacctacaa 1920 tttcacttcc aggacaacac caaaacatca ataaaggtat tgcacactcc taacatagcc 1980 tatgacttac tcagtttgaa tgaattggct gcagtagata tcacagcatg ctttaccaaa 2040 aacgtcttag aacggtctga cggcactgta cttgcaccta tcgtaaaata tggagacttt 2100 tactgggtat ctaaaaagta cttgcttcca tcaaatatct ccgtacccac catcaataat 2160 gtccatacaa gtgaaagtac acgcaaatat ccttatcctt tcattcatcg aatgcttgca 2220 catgccaatg cacagacaat tcgatactca cttaaaaata acaccatcac gtattttaac 2280 gaatcagatg tcgactggtc tagtgctatt gactatcaat ggcctgattg tttaatcggc 2340 aaaagcacca aacacagaca tatcaaaggt tcacgactaa aataccaaaa ttcatacgaa 2400 ccctttcaat acctacatac tgacatattt ggtccagttc acaacctacc aaaaagtgca 2460 ccatcctatt tcatctcatt tactgatgag acaacaaaat tccgttgggt ttatccatta 2520 cacgaccgtc gcgaggactc tatcctcgat gtttttacta cgatactagc ttttattaaa 2580 aaccagtttc aggccagtgt cttggttata caatggaccg tggttctgag tatactaagc 2640 agaactctcc ataaattcct tgaaaaaaat ggtataactc catgctatac aaccacagcg 2700 gattcccgag cacatggagt cgctgaacgg ctaaaccgta ccttattaga tgaactgccg 2760 tactcaaact gcaaatgtag tggtttaccg aaccatttat ggttctctgc aatcgaattt 2820 tctactattg tgagaaattc actagcttca cctaaaagca aaaaatctgc aagacaacat 2880 gctggcttgg caggacttga tatcagtact ttgttacctt tcggtcaacc tgttatcgtc 2940 aatgatcaca accctaactc caaaatacat cctcgtggca tcccaggcta cgctctacat 3000 ccgtctcgaa actcttatgg atatatcatc tatcttccat ccttaaagaa gacagtagat 3060 acaactaact atgttattct tcagggcaag gaatccagat tagatcaatt caattacgac 3120 gcactcactt tcgatgaaga cttaaaccgt ttaactgctt catatcaatc gttcattgcg 3180 tcaaatgaga tccaacaatc cgatgatctt aacatagaat ctgaccatga cttccaatct 3240 gacatcgaac tacatcctga gcaaccgaga aatgtccttt caaaagctgt gagtccaacc 3300 gattccacac ctccgtcaac tcatactgaa gattcgaaac gtgtttctaa aaccaatatt 3360 cgcgcaccca gagaagttga ccccaacata tctgaatcta atattcttcc atcaaagaag 3420 agatctagcg gcccccaaat ttccaatatc gagagtaccg gttcgggtgg tatgcataaa 3480 ttaaatgttc ctttacttcg tcccatgtcc caatctaaca cacatgagtc gtcgcacgcc 3540 agtaaatcta aagatttcag acactcagac tcgtacagtg aaaatgagac taatcataca 3600 aagctaccaa tatccagtac gggtggtacc aacaacaaaa ctgttccgca gataagtgac 3660 caagagactg agaaaaggat tatacaccgt tcaccttcaa tcgatgcttc tccaccggaa 3720 aataattcat cgcacaatat tgttcctatc aaaacgccaa ctactgtttc tgaacagaat 3780 accgaggaat ctatcatcgc tgatctccca ctccctgatc tacctccaga atctcctacc 3840 gaattccctg acccatttaa agaactccca ccgataaatt ctcatcaaac taattccagt 3900 ttgggtggta ttggtgactc taatgcctat actactatca acagtaagaa aagatcatta 3960 gaagataatg aaactgaaat taaggtatca cgagacacat ggaatactaa gaatatgcgt 4020 agtttagaac ctccgagatc gaagaaacga attcacctga ttgcagctgt aaaagcagta 4080 aaatcaatca aaccaatacg gacaacctta agatacgatg aggcaatcac ctataataaa 4140 gatattaaag aaaaggaaaa atatatcgaa gcataccaca aagaagtcaa ccaactattg 4200 aaaatgaata cttgggacac tgacaaatat tatgacagaa aagaaataga ccctaaaaga 4260 gtaataaatt caatgtttat cttcaacagg aaacgtgacg gtactcataa agctagattt 4320 gttgcaagag gtgatattca gcatcctgac acttacgact caggcatgca atccaatacc 4380 gtacatcact atgcattaat gacatccctg tcacttgcat tagacaataa ctactatatt 4440 acacaattag acatatcttc ggcatatttg tatgcagaca tcaaagaaga attatacata 4500 agacctccac cacatttagg aatgaatgat aagttgatac gtttgaagaa atcactttat 4560 ggattgaaac aaagtgagcg aactgtacga aactatcaaa tcatacctga taaaacagtg 4620 tggtatggaa gaagtcgtgg atggtcatgc gtatttaaga atagtcaagt aacaatttgc 4680 ttattcgttg atgatatgat attgttcagc aaagacttaa atgcaaataa gaaaatcata 4740 acaacactca agaaacaata cgatacaaag ataataaatc tgggtgaaag tgataagcaa 4800 attcagtacg acatacttgg cttagaaatc aaatatcaaa gaggtaaata catgaaatta 4860 ggtatggaaa actcattaac tgagaaaata cccaaattaa acgtaccttt gaatccaaaa 4920 ggaagaaaac ttagcgctcc aggtcaacca ggtctttata tagaccagga tgaactagaa 4980 atagatgaag atgaatacaa agagaaggta catgaaatgc aaaagttgat tggtctagct 5040 tcatatgttg gatataaatt tagatttgac ttactatact acatcaacac acttgctcaa 5100 catatactat tcccctctag gcaagtttta gacatgacat atgagttaat acaattcatg 5160 tgggacacta gagataaaca actgatatgg cacaaaaaca aacctaccga gccagataat 5220 aaactagtcg caataagtga tgcttcatat ggtaaccaac catattacag tcacaaattg 5280 gcaacatata tttacttaat gggaaaggta attggaggaa agtccaccaa ggcttcatta 5340 acatgtactt caactacgga agcagaaata cacgcgataa gtgaatctgt cccattatta 5400 aataacctca gtcaccttgt gcaagaactt aacaagaaac caattactaa aggattacta 5460 accgacagta aatctacaat cagtataatt atatccaata atgaagagaa atttagaaac 5520 agattttttg gtactaaagc aatgagacta agagatgaag tatcaggaaa tcatctgcac 5580 gtatgctata tcgaaaccaa aaagaatatt gcagacgtaa tgaccaaacc tcttccgata 5640 aaaacattca aactattaac aaacaaatgg attcattaga tctattacat tatgggtggt 5700 atgttggaat aaaaatccac tatcgtctat caactaatag ttatattatc aatatattat 5760 catatacggt gttaagatga tgacataagt tatgagaagc tgtcatcgag gttagaggaa 5820 gctgaagtgc aaggattgat aatgtaatag gataatgaaa catataaaac ggaatgagga 5880 ataatcgtaa tattagtatg tagaaatata gattccattt gaggattcct atatcctcga 5940 ggagaacttc tagtatattc tgtataccta atattatagc ctttatcaac aatggaatcc 6000 caacaattat ctaattaccc acatatatct cacgtatatg tgcaaacacc aagttgatct 6060 atttttactt tcctggaaaa cgccatcgaa atagtcgcca aacaaatcga tgggctggga 6120 aaacgcgtca tcaattcaac cgaataagga aaactaagcc acttcacgcg gttccggata 6180 tttgtccagc ctctttttcc gaaaaaaaaa aaattaaata ataaaatgaa acggacagga 6240 attgaacctg caacccttcg attgcatctt attccgtgga tttccaagat ttaattggag 6300 tcgaagtcta ccattgagcc acgttcatct tgaannctgc cgaaattctg tgttgctata 6360 atggttgaat tagaatctct taaaatagct actcatactt cttcataact aatccattag 6420 tgaccatatg aagcaatcgg acgccacaca tcattgatgt ttcacgatgg agaatgataa 6480 cccactaagt ggcgattgtg ggcaaagtaa gttaaacacc tattgctcat atgatc 6536 // ID L1-1_YL repbase; DNA; FNG; 6872 BP. XX AC YLI319752; XX DT 28-JUN-2005 (Rel. 10.06, Created) DT 28-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE Yarrowia lipolytica non-LTR retrotransposon. XX KW L1; Non-LTR Retrotransposon; Transposable Element; Ylli; L1-1_YL. XX OS Yarrowia lipolytica OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia. XX RN [1] RP 1-6872 RA Casaregola S.; RL Direct Submission to Genbank (28-JUN-2005). XX DR Genbank; YLI319752; Positions 1 6872. XX FH Key Location/Qualifiers FT CDS 365..2548 FT /product="L1-1_YL_1p" FT /note="gag-like protein" FT /translation="MNIYNRARPEKTFTMETAQAQASAGNSLGAPNPPPPD FT LSRGDGATSTETPNQTDIEKIQKNDKNDENNKKNDKNDKNDKKNDNNITLN FT AWKSKAEVKALLTSNPSTLKFNLNKERISEPLAAPNGRHTSGRFNVSYVAS FT KENFFRRALDRSATPDWNLPISMFLEHLDNAAEVDEKDTISVLEGVIEKFD FT EIKGQVGLAEFDLSRHNLDIVPHLIDQINLEQDPEDCYQVGNGWHYLTSDA FT LTDPHEQRMAVILETVSLIVEANTQDYRIMRKGSANPAGRRVLYYFNLPSY FT MKMERQTEDAFKIHLNAILNQFDVDIDQAIPGSSLLSGTLLMTSANHQNIS FT GPVIAVRALLGSTLPQTIPDFFVNLDPTKARLTGSKLIKMHFANGDNICVK FT CKSTKHIREACPEKDMVTPKIFRTRAHQGTLPQRGKALASIHAPSTVEPPV FT QTRKFHHTPATHQWETVGTKSPRHRRTRDTSPQPTGQKPLRSYYNFEVLSD FT KTGEDTPEETEQTNQLPSTNQQHGTQNLPINIPASEEDTVPDDQETEQADV FT SMNGFDTQPDALAHPEVAPDVTQFLPPATPLNTEATNNGLPHDHTSPNTTN FT QTQPPPGSIHEGRPRGGHTTSSFSGEPSHTTLGKKHIAVFQTASSEVPVQI FT LNPDRSENRLCWLPSQEVAKFIDGRCPTFLSTCHFKVFHDGATLSSVDEIV FT EPPNSPPNPPRVTTLHEVDTMLRPGQNQ" FT CDS 2515..6453 FT /product="L1-1_YL_2p" FT /note="reverse transcriptase" FT /translation="GGHNAPTGAEPVSMSFTSTTTPSKAPCKSTQAKMKSP FT NVKVITANIGGFKMAEALNRLPDTIVNIIRTTHYPDLVLLQETNWVDSSLQ FT TAQQIISNSPYPGGRHYTLLGSTAGVSNRSVGVGLVYSDNVTITNFTTVFE FT YFPALDNRLCLADVHIKGTDRHLSLINVYAPNEQGASPFTNRQFYQSLDDY FT LRLQPCQYPLIAAGDWNAVASNDGRIGEKVTTHLKDFLANWDLLDTYTLIS FT KHRKGLYTHTNNSRGAGRRLDQLHISSTLSQWIKSTQLVTNKQGHNITKSS FT HHAVQFVFNFGNLTQRQDRGPGTWRMPWWVFDTEYIAWLKFHVKSILKRYG FT PLKPSLKLQCLKENIKVTIQQEAKNRALRDSNHPDNRRREALMATASDWQA FT YPANEPYPMLHARVEQSKQQMEIHSLRNHQGRVKTDTSSLCDISARYFDNI FT FDRAADINDTDDSAFLDLFPEETRRVNTANPSLDSSFTKEEIFDTIKASTH FT NSAPGPDGIPYRFYRDCWDELGDLMTDVYNEAGADSPISTERNTAIIKLLY FT KSGDQADISNYRPISLINTEVKIYTQLINKAIQNILPDSIHGAQNGFVPGR FT HITNNLDTMDHFCNAYSQLNMGWVVGSLDFRKAYDTISQSWVIKTLRNVGV FT SELMINRILAVQQNAVTRINIRGVLSRPVRIKIGVRQGCPLSPTLFIIAVD FT ALVRRLDREMFGLAPGLPLSHHHTTGHRPPQPPTHPEAVAAGHMKVSAFAD FT DIAVFLNNIQDVATVGRVLCLFQRVSGLTLNPSKTVLQKIGPPDCFVPLTF FT IDAEWQRTIDATWPTDNNTRQAPTLRTSDNIFRYLGVHFGNRERLDTHYAQ FT IKEDLKESLRRLSLWGLPYYSKAWMINIYFFSKLNFLGPYVSQIDNTFIRE FT LNELACDKINKLSPDKTRKTFSNGFIQTPVGRGGLNLRDMGRFMVCLKAAR FT AYRFFHGSSPALWDCTFQFYSRTHSLTQEKPHQRVDCRFPTGQAWGYAASP FT TMRDAIRASFELNKPLTAEHANPREDHEPSTTDTVNHRIWERNQVNVRAAE FT SFREAHVDIAAARRYHPVRMVSTAEIDHLRWSMGPLTLENFMFHKTSSPDL FT PNFPHTLARPKKWTQRSDYGGISDDMVWQEVMHDLRKHYIADANKAQVLHL FT MRISRLPLVKWRYPDDHVFTKKNPGCGLCDKAIIQDLHEHIFCKCEVLLSM FT LTRMKIPSVDSLKDWIFTESKCGVLPSFPGHVNSDAPRKHQQVKTRKYLRE FT LAYGIWKMERSLRYSGDDATLGHVQQGLLQFLKEAQMCFYDGQPPALHDER FT E" XX SQ Sequence 6872 BP; 1913 A; 2075 C; 1519 G; 1365 T; 0 other; aacccaagag gatgaataga accataccat ggccggggga aacacgtgtc tatcaatatc 60 tccgcgatct cctcgtagac ttgctaagat acttgcgctg ccacggaccc atttcagatg 120 attgcttcag gacccgtaat cagcaagtga tctgtaacca gcaagtgatc tgtagtgata 180 tttttccttg cccgcaatca atgcaattct ttaccaaaat ctgaatacat gtcctttttt 240 tttctttctt ttttttcttc tttttttctc actttattga ttctgaacag ttacaataat 300 acttggtggt tcaagtaaga tttatatagt tgaaacaata ctttcacagc aaagttataa 360 ttaaatgaat atatacaatc gagcgcgacc agaaaaaacg ttcaccatgg aaacagcgca 420 agcccaagct tcggcgggta actccttggg cgctccgaac cccccacctc ctgatttatc 480 gcgaggtgat ggagccacct caaccgaaac ccccaaccaa accgacattg aaaaaatcca 540 aaaaaacgac aaaaacgatg aaaacaacaa aaaaaacgac aaaaacgaca aaaacgacaa 600 aaaaaacgac aacaatatca ccctcaacgc ctggaagagc aaggccgaag tcaaggctct 660 cctgacatcg aacccctcca cactcaaatt caacctcaac aaggagcgaa tttcggagcc 720 ccttgcggcg ccgaatggta ggcatacctc cggccgtttc aacgtgtcct atgtagccag 780 caaggaaaac ttcttccgaa gagctcttga ccgctccgcc acccctgatt ggaatcttcc 840 tatctccatg ttcctcgagc acctcgataa cgccgctgaa gtcgacgaga aggacaccat 900 cagtgtcctc gagggcgtca tcgaaaagtt cgacgagatc aagggtcagg ttggtctggc 960 ggagtttgac ctgtccaggc acaacctaga catcgtcccc cacctgatcg accagattaa 1020 cttagaacag gaccctgaag actgctacca agtgggaaat ggttggcact acctgacgtc 1080 ggacgccctc actgaccccc acgaacaacg aatggctgtc attctggaga cagttagtct 1140 cattgttgag gccaatactc aagattatcg catcatgagg aagggctcgg ctaaccctgc 1200 tggacgaaga gtactttact acttcaacct accctcgtac atgaagatgg agcgtcagac 1260 ggaggatgct ttcaagatcc acctcaacgc tattctcaac cagttcgacg tagacattga 1320 tcaggccatt ccaggttcct ccctcttgag tggcaccctt ctgatgacct ctgccaacca 1380 tcagaacatc tcgggtcctg tgatcgcagt tcgtgctctc ctaggctcca ccctgcccca 1440 gaccatcccc gacttcttcg tcaacctgga tcccaccaag gctaggctta ccggctcaaa 1500 gttgatcaag atgcacttcg ccaacggcga taacatctgt gttaagtgca agagcactaa 1560 gcacatccgg gaggcctgcc ccgagaaaga catggtcact cccaagatct tccgcacccg 1620 cgctcaccag ggtaccctcc cacagagagg taaagccctt gcttccatcc atgccccatc 1680 caccgtggag cccccggtcc aaactcgcaa gttccaccac acgcctgcta ctcaccagtg 1740 ggagaccgtc ggcactaagt cccctagaca tagacggact cgagacacgt ccccccaacc 1800 caccggtcag aagcccctcc gatcttacta caactttgaa gtcttgagcg acaaaaccgg 1860 agaggacaca cccgaagaga ccgagcaaac taaccagctg ccctctacga accagcagca 1920 tggaactcag aatctaccca tcaacatccc cgcctccgag gaagacacag ttcccgacga 1980 ccaggaaacg gaacaggctg acgtatccat gaacggcttt gacacccagc ctgacgcact 2040 tgctcaccct gaagtagccc ctgatgtcac ccagtttctt ccccccgcta ccccgcttaa 2100 caccgaggcc accaacaacg gccttcccca cgaccacacc agtcccaaca cgaccaacca 2160 aacacaaccc ccccccggaa gtatccacga gggccgaccc cgaggagggc acaccacctc 2220 cagtttctct ggcgagccct ctcacaccac gctcggcaag aagcacattg cggtcttcca 2280 gaccgcctcg agcgaggttc cggtgcaaat cctgaacccg gacaggtcgg agaacagact 2340 ctgctggctg ccttctcagg aggtagcaaa gttcattgac gggaggtgcc cgacattcct 2400 gtctacatgc cacttcaaag ttttccacga cggtgcgaca ctcagctcgg tagacgagat 2460 tgtagaaccc ccgaacagtc ccccgaaccc ccctagggtg accactctcc atgaggtgga 2520 cacaatgctc cgaccggggc agaaccagta agcatgtctt tcacctctac taccacccct 2580 tctaaagccc catgtaagag cacccaggcc aaaatgaaat ctccgaatgt taaagtcatc 2640 acggctaaca tcggcggttt taagatggcg gaagcgctta accgattacc cgacaccatt 2700 gtaaacatta ttcgaactac tcactacccc gatctcgtcc ttcttcaaga gacgaactgg 2760 gtggactcct ccctacaaac cgctcaacaa atcatttcaa actcgcccta cccggggggc 2820 agacactaca ccctcctcgg ctccacagct ggtgtttcta atagaagcgt cggcgtgggg 2880 ctagtctatt ccgacaacgt caccatcaca aactttacaa cagtttttga atacttccca 2940 gccctagaca acagactgtg tttggccgac gtgcacatca aaggcaccga cagacaccta 3000 tcgctgatca acgtatacgc accaaacgag cagggagcct cccccttcac taaccggcag 3060 ttctaccagt cattagacga ctatctacgc ctccaaccct gccaataccc cctgatagcg 3120 gcaggcgatt ggaacgcggt cgcctccaac gacggcagga ttggcgaaaa agtgacgact 3180 caccttaagg acttcttagc taactgggac ttactagaca cctacactct aatcagcaaa 3240 cacagaaaag gcctctacac tcacaccaac aacagccgcg gagctggcag gcgcctggat 3300 cagctgcaca tctcttcgac actctcacag tggatcaaat ccacacaact ggtaaccaac 3360 aagcagggtc acaacatcac gaagtcctct caccacgcgg tccaattcgt ctttaacttt 3420 ggcaacctca cccagcgaca agacagaggc ccaggcacct ggaggatgcc ctggtgggtt 3480 tttgatacag agtacattgc ttggctcaag ttccacgtca aatccattct gaagcgatat 3540 ggtcctttga agcccagcct gaagctgcaa tgcctgaaag aaaacattaa ggtcaccatc 3600 caacaggaag ccaaaaaccg cgcacttcga gattccaacc acccagacaa cagacgccgc 3660 gaggccctca tggcaacagc ctcagactgg caagcctacc cagctaacga gccatacccg 3720 atgctccatg ctcgggtcga acaatccaag caacagatgg agatccactc cctacggaac 3780 caccaaggcc gagtgaagac cgacacctcc tctctctgcg acatctcagc tcgatacttt 3840 gacaacatct tcgacagagc tgccgatatc aacgacaccg acgacagcgc ctttttagac 3900 ctcttccccg aagaaacccg gagggtgaat acagctaacc caagcctgga ctcgtctttt 3960 accaaggagg agatcttcga taccatcaag gcgtctacgc acaacagcgc gccagggcca 4020 gacggcatcc cgtacaggtt ctaccgcgac tgctgggatg agctggggga cttgatgacg 4080 gacgtctaca acgaagctgg agccgactcg cccatcagca ccgaacgcaa caccgctatc 4140 atcaaactac tgtacaagtc gggagatcag gccgacatct ccaactacag gcctatttct 4200 ttgatcaaca cagaggtgaa gatctacaca cagctcatta acaaagccat ccagaacatt 4260 cttccggaca gcattcacgg cgcccaaaac ggtttcgtac cgggtcgaca catcactaac 4320 aatctcgaca ccatggatca tttttgcaac gcctactccc agctgaacat gggttgggtc 4380 gtaggatcac tggacttccg gaaagcctac gacactatca gccagagttg ggtgataaag 4440 acgcttcgaa atgtgggtgt ctcggaactg atgatcaacc gtatcctagc tgtacaacag 4500 aacgcagtaa cgagaatcaa catcagaggt gtcctatctc gcccagtccg catcaagatc 4560 ggagtgagac aaggatgccc tctctctcca accctcttca tcatcgcagt agacgcactt 4620 gtgcgtcgtc tggaccgaga gatgtttgga ctggccccag gcctgccact atcccaccac 4680 cacaccactg ggcacaggcc gccacaaccc cctactcacc cggaggcagt ggcagctgga 4740 cacatgaagg tgtcggcttt cgcggacgac atagcggtgt tcctcaacaa catccaggac 4800 gtggccacgg ttggtagagt gctctgcctc ttccaacggg tctcaggcct cacactaaac 4860 ccgtcaaaga cggtgcttca gaagatcggc ccccccgatt gttttgttcc actaaccttt 4920 attgacgcag aatggcagcg aacaattgac gccacctggc caaccgacaa caacacacga 4980 caggccccga cgctccggac atctgacaac attttccggt acctcggagt acacttcgga 5040 aatcgcgaaa ggttggacac gcactacgct cagatcaagg aggacctcaa ggagtcgctg 5100 cgacgccttt cactatgggg tctcccctat tacagcaagg cgtggatgat caacatctac 5160 ttcttctcga aactgaattt ccttggaccc tacgtcagcc agatcgacaa caccttcatc 5220 cgagagctga acgaactagc gtgcgacaag atcaacaaat tatcacccga caaaacacgc 5280 aaaaccttca gcaatggttt catccaaact ccggtaggca gaggaggact gaacctgcgg 5340 gacatgggac gtttcatggt gtgcctgaag gccgctcggg cttacaggtt cttccatggc 5400 tcatcgccgg ccctttggga ctgcaccttc cagttctaca gcagaactca cagtctcaca 5460 caggaaaagc cacaccagcg cgtcgactgc cgctttccga caggccaagc ttggggctac 5520 gcagcctccc ccaccatgcg agacgcaatc agagcttctt tcgagctcaa caagcccctc 5580 accgcggaac atgccaaccc tcgagaagat cacgagccct ctacaacaga cacagttaat 5640 cacagaatct gggaacgaaa ccaggtgaac gtgagagcag cagaatcttt ccgggaagca 5700 cacgtcgaca tcgcagccgc gagacgatac catccggtca gaatggtgtc cacagcggaa 5760 atcgaccacc tccggtggag catgggacca cttactctag agaacttcat gtttcacaag 5820 acctcgtctc ccgacttgcc aaacttccca cacacacttg cacgaccgaa gaagtggact 5880 caacgaagcg actacggggg catctctgac gacatggtct ggcaggaggt aatgcatgac 5940 cttcgaaaac actacatcgc cgacgccaac aaagcacaag ttcttcacct catgcggata 6000 tctcgacttc cgctcgtgaa atggagatac cctgacgacc acgttttcac caagaagaat 6060 ccaggatgcg ggctctgtga taaggccatc attcaggatc tgcacgagca tatcttctgc 6120 aagtgcgaag ttcttctttc catgttgacc aggatgaaga ttccgtcagt ggactctcta 6180 aaggactgga tctttaccga gtcgaaatgt ggagtactcc cctctttccc agggcatgtg 6240 aacagtgacg ccccccggaa acatcaacaa gtcaagacac gcaaatatct gcgggaattg 6300 gcttatggga tctggaagat ggagagatcc ctccggtact caggggacga cgccaccctg 6360 ggacatgtcc aacagggttt gcttcaattc ctgaaggaag cccagatgtg tttctacgat 6420 ggacaaccgc cagcacttca cgatgagcga gagtagacac agtagcaagc gtaaaaggcg 6480 gccgaggcca ccgagagaac agcgtagcag ggcgcgtagt caccacaggg gacgcagaac 6540 caaaccaatg acgaagaaga accacaagga gaagttttca aaggcaatgc aaatgaagag 6600 ggcaatggaa ggattgagat tagagaactg gagactggag tggcgttttc ccgatgaacg 6660 aacaaacacg cgaagctatg tggaccaaca tacaacacgg actgaaccag gtttttttat 6720 gattttttta ctggaaatag gtacgtgcca agttggacca tgacactaaa cgtgtttaat 6780 tagtaatatt cgtgtaagcg tacattcatt tcaaaggtta ttctttcacg gcaaagttat 6840 aattaaatga atgtatatgc agaaaaaaaa aa 6872 // ID TCN1-LTR repbase; DNA; FNG; 501 BP. XX AC . XX DT 30-MAR-2005 (Rel. 10.03, Created) DT 30-MAR-2005 (Rel. 10.03, Last updated, Version 1) XX DE C. neoformans LTR retrotransposon - LTR consensus. XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW TCN1-LTR. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-501 RA Goodwin T.J. and Poulter R.T.; RT "The diversity of retrotransposons in the yeast Cryptococcus RT neoformans."; RL Yeast 18(9), 865-880 (2001). XX RN [2] RP 1-501 RA Gentles A. and Jurka J.; RT "C. neoformans non-LTR retrotransposon TCN1."; RL Direct Submission to Repbase Update (15-MAR-2005). XX DR [2] (Consensus) XX CC Internal segment is TCN1-I. XX SQ Sequence 501 BP; 146 A; 125 C; 102 G; 128 T; 0 other; tgtcacgagc ctgcacaaag aagaagagat aagatatcat aggagggagt tacgtaatag 60 gaaggcaaga tccgattcag ataagaaggt ccagctggac ctccagttgg acctccgaga 120 aaagaactgg acctccagct ggacctccag ctggacctca aaggatataa atagatttct 180 gtagaagtat ataaagggga gctttgtcct cgatcttgat cttcttcccc tcgaagatca 240 atatttcata agttactttg cgaaaggtcc tcgagctccc agtgctcact ctcgtcttac 300 cttgcaccac cttcgacata aacttactcc actagtatat aagcttgcct gatcttccca 360 agcgaatata cctccgccct ataccatacg ccaacagaca agtgtcaaga ggtatatcat 420 acatatatct cattgcttag ttaaactacg gctttctatc tcgtctccaa ggccggacct 480 tgttggggac gagtcgtaac a 501 // ID TCA3_LTR repbase; DNA; FNG; 313 BP. XX AC AF510498; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans Ty3/gypsy-type retrotransposon TCA3_LTR, long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; retrotransposon; Ty3/GYPSY superfamily; KW TCA3_LTR. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-313 RA Goodwin J.T. and Poulter T.R.; RT "Direct submission."; RL Direct Submission to Genbank (08-MAY-2002). XX DR Genbank; AF510498; Positions 1 313. XX SQ Sequence 313 BP; 105 A; 57 C; 30 G; 121 T; 0 other; tgacgatcct gcatatttcg tcataattca cacattctta aaattatgca cacatccttg 60 aaatgtgtta atattcccaa cattatcaat tatatgtgtt cagaattggt tgcaaagtta 120 tcaactcaat tcacgctata taaaccttac aatttctcta catttttata tttttttata 180 ttggctttct tttagaatca atcaatactt tttttatcat ttagatacat ctttcatcta 240 ttaatagatt atctttctat atatcaaaac acgacacagt cacgtgccaa aaaggatata 300 agaaggaact tca 313 // ID Copia-66_MLP-I repbase; DNA; FNG; 19097 BP. XX AC . XX DT 22-APR-2011 (Rel. 16.04, Created) DT 22-APR-2011 (Rel. 16.04, Last updated, Version 1) XX DE LTR retrotransposon from the Melampsora larici-populina genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-66_MLP_; KW Copia-66_MLP-LTR; Copia-66_MLP-I. XX OS Melampsora larici-populina OC Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; OC Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora. XX RN [1] RP 1-19097 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Melampsora larici-populina RT genome."; RL Direct Submission to RU (21-APR-2011). XX DR [1] (Consensus) XX CC Positions [2947-3453] - Integrase core CC LTRs are 100% similar to each other. CC Contains an insertion of DNA3-2_MLP (masked by x). XX FH Key Location/Qualifiers FT CDS 542..1621 FT /product="Copia-66_MLP-I_3p" FT /translation="MSQPDISTDRLKELNRKHDDVHKFTTGIEHLALDGSN FT IARWKLRTARAVYEMTDVSSYWTSQRPDEELEIQMAIDRCAGRVINSTIHE FT DLKDLIADKSLAHNAMFTLDELFCQGGRTAQYVTFRSIMLRRYNPASTNLM FT TFINDVNKDFEKLKSVGFTWDEDIVKGMVFQLCAPTTGEYGMDIINATLDA FT QYQLDKKPFSSTEVRAAMQNLITTRRTVHESEGIQALSSSFAQMNTGNLNN FT RFDNQPRFTPPRYSTPSKPILMNFTGPTPPGPISALIKDRNKSEINPIKPG FT QAAAPKVLQGLFQCFHGGVFGHGTQRCPLWMKRINRTAPHFWDWRKTNLNR FT FYSIQALGLNPSSISAR" FT CDS 6440..7522 FT /product="Copia-66_MLP-I_4p" FT /translation="MIQEAFDRDDIEGARKLTEKLHREEARQSMPQQTQQR FT RNAYVFDEESSNDPNEPRTGQRDRERAMHEPAQRTPSVTFLREGRQVVEKE FT ARSGANGEGEEGWFHGSKSEEESNKAKSIMAAKKGSLTLSNGDMIHNGQVF FT RCGSAKMEDALTPLSPHLTTKLKALKSFIPLPVFDEDFLMKDQKAWSLLPP FT KSEDKVEKEKRMYGGEGPVEELTMNFEAWSDCMELFCVHLRAADWEPVAEK FT FEHHMNIVKKIRKDFGWMVALRYCRLVRQGVMRETIDGSLGNWAELQDHLL FT TQAKTKAESFNERAYKTNPYAEGGPKASICPYTNQPKPSSLKHVASTTAQF FT ASNQASQAVNRHASTSSY" FT CDS 8161..9765 FT /product="Copia-66_MLP-I_2p" FT /translation="MNLEVWEKELYQVNLLSKHKYIIRMFTTGFTQGIKEA FT YVPNKDYYCPPNHSSAQLAREKIEENFKVELEAGRMFGPWTKQEVYKKIGF FT FRTNPLGAVVNRDGSFRAISDLSYPRHLVDVSSVNEGVNKKEFETSWDDFK FT QVAYFFTSYKGKLLLGIFDWAKAYRQIPVAENQWRFLMVLDFNDQVLLDTR FT VQFGGVAGCGTFGWAAEVWKELMVEKFKLLAGFRWVDNTLFVKPVEDTEAG FT SMLDIVSLSTEMGVTTNEKKWKEFTYVQKYLGFVWDGENKTVQLPREKVEE FT RLENISTYLKVERQSFKETEILVGRLNHSAYVFPQMKVYCSAIYRWMKEWK FT HKYALRDIPEEVVEDLAIWKHTLTVAEPLRTIPRPETRTVGWVGDASTSYG FT LGIIIGIYWARFKLKDRWDEEEPDGSKRGIAWAETVAIRLGWQMLKCLEDV FT RGRTYLALTDNTVSEGAINNGKSRDPLVNREWKRIQEDLLWHNSAIEAKRV FT KSADNAADALSRGLDSTKQKENMLLISLPADLKEFMYQT" XX SQ Sequence 19097 BP; 5136 A; 3982 C; 4191 G; 5165 T; 623 other; actactgtgg aagccgattc tgggagtgag cactgacgtg ctatcgtact atctgctata 60 ggttatgagc tgcgctatcg ttgaaatcgc cttttaaatc ttgcaaagct cgtagtgtaa 120 gtctgaactg ccagtcagca tccggtcata tgtcagtagc tcgcactccc ccgaagaaat 180 tgtcacgtac cacggaaagt agtatccaaa cgcggtcgca gtcacaagct ttatcgtctc 240 gttcgaactc cgtcaattgt cacgtaccac ggaaagtagt atccaaacgc ggtcgcagtc 300 acaagcttta tcgtctcgtt cgaactccgt ctcgggatct caaaccggag gagaaacatc 360 gactagggaa aacacaccct tagccggtac tcattcatct ttgaatcatc ccttcactga 420 aaaccccccc acaaactatc tgaaccctgc tctactattg aacatcggac attgtcgtca 480 aaccattttt catcatactc aagaattgga tcatttatcg ttgaacgaag acactgcaag 540 aatgtcacaa ccggacatct ctacggatag actcaaagag ttaaatcgca agcacgatga 600 tgtgcataag tttactactg gaatcgaaca tctagctctt gatggatcca acatcgctcg 660 atggaagttg cgcaccgcaa gagcggtcta cgagatgacg gacgtttctt cctactggac 720 gtctcagagg ccagatgaag agttggagat tcagatggcg atcgatcgat gcgccggacg 780 agtcatcaac tcaacgattc acgaagacct aaaggacctg atcgccgata agtctctagc 840 tcacaatgcg atgttcactt tggatgaact cttttgccaa ggtggtagga ccgctcaata 900 cgttactttt cgctccatca tgctcagacg ctacaatcct gcttctacca acttaatgac 960 cttcatcaac gatgtgaata aagatttcga gaaactcaaa tcggttggtt ttacttggga 1020 tgaggatatc gtcaagggta tggtctttca actctgtgcc ccaactactg gggagtatgg 1080 tatggacatt ataaatgcga ctctcgacgc gcaataccag ctagacaaga aacccttttc 1140 ctctactgag gtacgagcag ccatgcaaaa tctcatcaca actcgtagaa cggtacatga 1200 gagtgaaggg attcaagcac tcagcagctc tttcgctcaa atgaacaccg gcaatttgaa 1260 taaccgattc gacaatcagc ctcgatttac tcctccgcgt tactcgactc ccagtaaacc 1320 aattttgatg aactttactg gacctacccc tccgggcccg atttcagctt tgatcaaaga 1380 cagaaacaaa tcggaaatca acccgatcaa gcccggacaa gcagcagctc ccaaagtact 1440 tcaaggcctt tttcaatgct ttcatggtgg cgtgttcggt catggaactc agcgttgtcc 1500 tctttggatg aaacgaatca atcgcacggc gcctcacttt tgggattgga gaaagacgaa 1560 tctcaataga ttttacagta tacaagcttt aggccttaat ccctcttcaa tctcggctcg 1620 ttaaattcaa gtagaacata ctccttcatc atatacgcca tctcaagtat cggcatcaac 1680 cgtagcttgg agtgcagaag gcaatcaacc tgactctgtc cccacagagt atttgttgga 1740 cagcggtgcc acgcatcatg tgagcaatgc gttgcctctt ctgttgaacc attcccctct 1800 tccccatcct atcagattga aaacagccgc tcaaggtgac aacgctctga ttgtaggaaa 1860 aggaaacctc cgagtgaagg cgacgaacgg atctgatgtc atcatcacag atgtctatta 1920 cagtcctcaa gctacaggaa tgcttatttc tcaagcagcg ctggtcaaaa atggagcaaa 1980 gttatggttc tggggaaatg atgttatttt gagaatgaga gatggtctat cagtagcagc 2040 ttcttattgt aatcggcgct gggttataaa tgcaatccaa actcatgtta tcaccaaaaa 2100 agaacctgag agagtaggct gtgtgaaagt gatgagcact cagcaagata ccgatttagc 2160 ctttctttgg cacagacgtt ttggtcacgt axxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2220 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2280 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2340 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2400 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2460 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2520 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2580 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2640 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2700 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx 2760 xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxxgtagac 2820 atgaagagaa ttcgcaagct ttgcgctggc cagctaggcc taggcctgcc cttgtctatt 2880 ccatccactt ctttcacctg tgaagattgt ttggtatgca agagcacaag acagaggaag 2940 ttggggagat caggaagaga acacggactt ttagacatca tcgtatcaga cgtcatgggc 3000 cctttccctg aagatgtgaa tggtaaccgt tttacagtca ctttcagaga tgtagcaaca 3060 actttctcag acatagtcat cattaagaat aaatcagaag tacctgacac tttcactcgt 3120 gtaatcaaca aatgggaaag ggaaactggc tttaaagtta aacatgttag aactgacgga 3180 ggaggcgagt acataaagac aacattcaat tcttggctga aatcaaaagg catttttcac 3240 gaacactcga acccttatga accggaacaa aacggtgtgg cagagcgtct aaatcgaacc 3300 ataagtgata tgggtaggac gatgttggca gcatcacatc taccgcaatc attctggtct 3360 ttcgcatacg tggcggcatg ttaccttcat aacagacttc ctaactcgct gactggggac 3420 aaaacacctt ttgaactctt ctacggacgc aagcctcagt tagacatcat caggactttc 3480 ggatcgacag cttttgtaca ccgacatgaa gcgcagcgta gtggtaagct agacaattga 3540 gggagaaagt gcgtgatggt gggttactta gatggtggta aaggctggat cttctacgat 3600 gctggctcga aggtactact caagaccggc atcgcagtct ttccatatga agataagttc 3660 gtacatgaaa aatcttcatc ctcaccagaa gaacctactt catctaccac tttgaacaag 3720 ctactgaaca taccacctaa gaagggaagt ttagaattca ttgtcaatgc gctacaactt 3780 ggcaatttct cagacaaaat caaagtacac cacgaggacg cgcaagtaga agtcttaaca 3840 aactcagtga atctgtcggc tggactgaaa gaacctctat catataccgc agctatgaaa 3900 gacgaatacg ctaaggagtg gaaagatgct attgacgttg agctgaaagc catggacgac 3960 atgggagtgt ggaagattgt agactgcccc gccaacgtca acacaatcag cctcaagtgg 4020 gttttcaaac acaagcaact ggctgaggat ggaactccaa tcaaatttaa agctcgacta 4080 gtcgctcagg gattctcaca agtcgaagga atcaactatg acaaaacttt cgctcctacg 4140 gccagcatgg catctcttcg ttttgtctta attctcgcaa caagaatggg atgggttgtc 4200 cattcttttg acgtgacggc tgcatatctt catagtgaca tcatgaacaa actgtatttt 4260 agattgccac cgggatgtat ggaagcagcg aggaaggcta ataaggtttt ggaagcggta 4320 aaagcgttgt acggaactaa acagggtgcg aggtgttggt ggaagcatat tgacaagatc 4380 ttaatcaaac taggttttaa accatgtcag tttgatcaat ctctatatat ttgcaagcgg 4440 ggtaatgagg tgtgtattat ttgggtgcat gtagatgatg gggttgtgac gggtagcagt 4500 gtggagttgt tgagagagtt gtcgaaggcg ttgactgaag agttgaagat cagaaggcat 4560 ggatgtgaaa agattagagg atggtagttt tgaattatct caagctggtt taacgaacaa 4620 gatcgtcaga gacttcctag agactcccgg gaaggcaact acgcctttaa acgcatcaaa 4680 cttaccttca tcgccggaag aggacgaaat tgaagtcgac aaaacaagat acctttcggt 4740 cataggatgt ctcaattatc ttgcggtagc tactagacca gatctcacct acgctacgaa 4800 tttcttggca agattctcgg ctagacctac ggctcaacac tgggcagcta ttcaaggagt 4860 gatgcgttat ctcaagacta ccggggttgt gaagttacat ctgaaaccgt tgatgagcga 4920 ggtgaagacg gggctacata cttatgttga tgcaaattgg ggaggggagt actcaaggtc 4980 cgtccatgga tacacgactt tctttctcgg atgcccgatt gcttggacgt cgaaaagaca 5040 aggttgcgta gcaacatcga catgtcatgc cgaatacatg gcattgggta cagcagcaag 5100 ggaagcggtg tggttgagga atttagtgga agatgtgata ggtgcaatgg ggccggttaa 5160 actgttctgc gataacactt cagctattca cgtatcgaag gacaattctt caaacaaaag 5220 aaccagacat actgataggg agttctatca aggctgccac tatactatac cagtatatta 5280 tactgttggt atagtatatt tcaagtatac tggaatacac ctcgaggcac gagttggtgg 5340 aaatgtccac tctcgtgaaa ggtctagatt aggagtgaca cttggcgtcc gagaacttct 5400 cggaagagat ttgtaattcg aaatctctct aagccattca gtcactcctc atctagacct 5460 ccacagcgct tagctcaagc ataaaagata aatcaaaata gttttaaaaa ttcaaattag 5520 aaaataagac gtttacaatg gatttaagaa atcaaataaa tcaagcaact ggaaatgtac 5580 aaagacgatt aactcgagct gaagcagcgg caactggagc gcagttggca gagaggttgc 5640 ctactcctag aagaggacaa ccagcaagga gagacgaaga aaggaacgaa gaagacgaaa 5700 gcgaggggag aaatgaggag gaatcacacg taccattgcg aagacaagca atagaagagg 5760 aagacgaaac agaggaatgg ggaggaatta aagaggtaga agacgacgag caagtcaacg 5820 acgatgatga gatactcgaa tttgagaggt taaagaatgg taagactaac agtgatatta 5880 ctgactttcc ttatccaatg tcctttcttt tctctttatt tccttttttc cttctatttc 5940 caaatttctt tttcttttct ttccccatct ttccccatct ttttcccttt ttattctcct 6000 tccttctttt ccccctttcc atcttttata tatgaggtat gaaaaaacag attaggaacg 6060 atgaacgaag aggttgaacg ggaaggacaa tcgaagcctg gcccggctac taataggtgc 6120 ccagcctaag aattggctta cagtagatat cttagcctgg cccggctgca aataggcgcc 6180 cagcctaaat cggctaacaa tagatgatta gcctagtctg gcaggagaat aagactcagc 6240 cgagacgggc ttacaatacg tgctatccgt tatcatgatc ctttttgatc ctccgctatc 6300 cgttatcatg atccgttgat ccaatttcca tcagtcgaat catccaacac cacatcgtaa 6360 tttcgtttgg aaacccaggt actgacacat cgaatggtta ttgtcatctg tagaagcgag 6420 gcgagaaacc ttagtggaga tgatccaaga ggcgtttgat cgagacgata tagagggagc 6480 aaggaaactt accgagaaac tacatcgaga ggaagcgagg cagtcaatgc cacaacagac 6540 acaacaacgc cggaacgcct acgtcttcga cgaagagtca tcgaatgatc caaacgaacc 6600 tcgcactggc caaagagatc gcgaacgtgc gatgcacgaa ccagcgcaaa gaacaccaag 6660 tgttacgttc ttgagagaag ggaggcaagt cgtcgagaag gaagcgagaa gcggagctaa 6720 tggtgaaggc gaagaggggt ggttccatgg ttcaaaatcg gaggaagagt ctaacaaggc 6780 aaagtcaatc atggcggcca agaaaggatc attaactttg tcaaatggcg acatgatcca 6840 taatggacaa gtgtttagat gtggatcagc gaaaatggaa gacgcactga ctcctttgtc 6900 acctcacctc acgacaaagt taaaagcttt gaaatcattt atcccgttac cggtttttga 6960 tgaagacttc ttgatgaaag atcagaaagc atggtctctt ctaccaccaa agtcagaaga 7020 taaagttgaa aaggaaaaac ggatgtatgg gggggaagga ccggtggaag aactcacgat 7080 gaattttgaa gcatggagcg attgcatgga gctgttttgt gtacacttac gagcagctga 7140 ctgggaacca gttgcagaga agttcgaaca tcatatgaac atcgtgaaga agatacgcaa 7200 agacttcggt tggatggtgg ctttacgata ttgccgcttg gtccgtcaag gggtgatgag 7260 agaaaccatc gatggatctt taggcaactg ggcggagttg caagatcatt tgttaactca 7320 ggctaagaca aaggcagaaa gtttcaacga acgggcttac aaaactaatc cctatgcaga 7380 aggtggaccg aaggcgtcca tatgtccata tacaaaccaa ccgaaaccgt cgagcttaaa 7440 acacgtcgca agcacgacag cacaattcgc tagtaatcag gcaagtcagg cggtaaatcg 7500 acatgccagc acgagttcgt attgaggaaa tggaaactgg aaacgatacc agggaagtta 7560 tcgagatacc tatcgagaac ctgcacgtga gcaataccgg ggtggtgatc agcgggacac 7620 taggggtccg aagtggggag aagggaagcg aagagagcgg agcagaagcc cagagaagcg 7680 ctatggaaaa cgaggagacg ggaaatggaa acaatcgtga gccttgtagt tgaatacatt 7740 tgttgagaaa tgaaatgcat gccgtagtcg gcaattgcat gacaacgtcc caagcacatt 7800 agagtgcagt cttttccctt gtcccacctt tctctttctg agcttcatac atgaaagctg 7860 acgagaattt aaagcgtaca aagctttgac ttgacctaca acattgtcaa atcttcttat 7920 aaaaccctaa tttgacaact cagaataagg agtccctgac attaatttcg aacttttttg 7980 aataatttgg cctgttacga cagattagcc caagtagaaa gagtacgtcc tgacgatgag 8040 aaatcagaag ggccaagggt agacaaaata agacctgttt tagattcgtc gcagtcgtgg 8100 aaggagacag aggcacgaga cagacgcact agggtatggc caaatggccc gtctcataat 8160 atgaatttag aggtttggga gaaggagttg tatcaagtaa atctgctgtc aaagcacaaa 8220 tatataatca gaatgtttac aacgggtttc acacaaggca tcaaggaagc ttacgtaccg 8280 aataaagatt actactgtcc acccaaccac tcttcggcac aactagcaag agagaagata 8340 gaagagaact tcaaagttga actagaggca ggaagaatgt tcggcccatg gacgaaacaa 8400 gaagtctata agaaaatagg tttctttagg acgaatccgt tgggagccgt ggtaaacagg 8460 gacggatctt ttagagcgat tagcgatctg tcgtacccaa gacatttagt agatgtttcg 8520 tcagtaaatg aaggcgtcaa taagaaggaa tttgaaacat catgggatga tttcaaacag 8580 gtggcttact tttttacttc gtataaaggg aagctactat tagggatctt tgactgggcg 8640 aaagcctatc gtcagatacc agtcgcagaa aaccagtggc ggtttttgat ggtactagat 8700 tttaacgacc aagttctttt ggatacgaga gtgcagtttg gaggcgtagc tggttgcgga 8760 acgtttggat gggcggcaga agtttggaaa gagctgatgg tagagaagtt taagctattg 8820 gccggtttta gatgggtaga caatacattg tttgtgaaac ctgtagaaga cacagaggcg 8880 ggaagtatgt tagatattgt tagtttaagc acggagatgg gagtaacgac aaatgaaaaa 8940 aagtggaaag agttcacgta cgttcagaag tacttaggtt ttgtctggga tggtgaaaat 9000 aagacggtgc agttaccacg agaaaaagtt gaagaacggc tagaaaacat atccacttat 9060 ctgaaagtag aaagacagtc cttcaaagaa acagaaatat tagtaggaag gctgaatcat 9120 agtgcgtacg tatttccaca aatgaaggtg tattgttcag caatttacag gtggatgaaa 9180 gagtggaaac acaagtacgc cttacgagac atacctgaag aagtggtgga ggatttagcg 9240 atttggaagc ataccttaac agtcgctgaa cctttaagaa ccatccctag acccgaaaca 9300 aggacagtag gttgggtagg ggacgcatcg acgtcttacg gcctaggtat catcatcgga 9360 atatactggg cacgatttaa gctaaaagat cggtgggatg aagaagaacc tgatgggtcg 9420 aagcgcggga tcgcttgggc tgaaacagtt gcaatacggt taggctggca gatgttgaaa 9480 tgcctggaag atgtaagagg aagaacttac ctagctttaa ctgataatac agtatcggaa 9540 ggagcgataa ataatggaaa gtctagggat ccactggtaa atcgggagtg gaagcgaata 9600 caggaagact tgttatggca caatagtgca atcgaagcta agagagttaa gtctgcagac 9660 aacgcggcag atgcattgtc tagaggatta gattcgacaa agcagaagga gaatatgttg 9720 ctgattagct tgccggcaga cctgaaagaa ttcatgtacc aaacttgata agaaatagga 9780 aacatacctg tgacatcctt ttgaaccgtt tttgcagtca cacaacctag cgagaagagg 9840 taagctactt agtaagagag acgagaagat agcaggagtg agaggatcaa cttaccaaag 9900 gaaaacttgg gtatagtgaa aatggaggta agtgatcgcc agcagttgaa caacgaaagc 9960 tcgtgagata caatgactag caatagaggg gctccgttca tcgccttcga gcagctcgtg 10020 agataccatg agacttatgg taggtctcca aagggacttg aacgaaaggt actagataac 10080 ctaggggact ggtaaagagg aaagagaaat gtcagcgaca gaaccttcac atttgattga 10140 tagaaccacg tcccaggaaa gacaatacct aaatcgattt aataccttaa tcgatttact 10200 tcatagacat gccaccatat agaaacccaa ccaacgaatc aagaagacag tcagacttac 10260 caggtcactt tgaacaagca gcgagagacg cgacactagc cggagctcat atggcggcaa 10320 gtggttgggc taaatccacg ttaaaaggtt attcgtctgg actgtcgaag tatatcacct 10380 ttgtcgaatc aaccggaaag aaatttcgag atgacaagaa gatatcagca aatgaaatgt 10440 acaattttat agtgtgggca ggggaatcgg gagtcaccgt aaatgatcca ccaaagagaa 10500 aggtagcttt gaaaaccatt gataagtata ttgatggaat acaagcctgg cacttagtga 10560 aacatgtcgc taaaatcgaa ttagatgaag gaatcgttag gatcttattg agagcgacga 10620 agaaaaagga ggaaggtgtc ttgctcaact cagagaaaaa acctgtaact gtccagcaat 10680 tactcacgat gttggataga tgcacgggac gatcagaaga acacgaattc gtagcagcaa 10740 ccgcgctagt cgccttttgg ggtttaatgc ggttaggaga ggtgttccgg tttaaaaagt 10800 ccactctcac tgttacaatt taggtaacat ttatgtacaa gaaggggtga tatactaatc 10860 accatccctg cccttacctt gcctggcggt gaggtaagtg ctttatggga aagcgcgcgg 10920 agcgagcgcg agtttggttt tacccaacca aactcttggt ttgttgaaac caatcccttg 10980 gttttccaaa ccaatctggg agttggttga gatctggttt ggttttgcta accaaaggga 11040 tctcgcggct catttactat aaactggctc attccgatga aggggttgtc cgattcccct 11100 tatcccaagg atggtaaggt acagacctgc cgttcttggc cggttggaca accccttcta 11160 cggcatgtct gggactcaac tctcgagcat tcgagaagca tgttccgggg ttaatgcggt 11220 aataccgcca tttttgagat tcttctaacg aaattgaatt gccgtgtatg aaccttaaag 11280 gttgcatcaa cgttttcccg cctttgagtt tcaactaccc agtcttattc tgtctaaaaa 11340 tgttttcgtc tcctctattt ccgtgagaga ataacttttt atgtagcgtc tgaaggcctc 11400 agatttccac cgtccaactt tttgtatcac tttctctgga gttcctaaat ttgcccttaa 11460 cgaagctcct cccacccgga aagaatgtcc tgaccatctt tctaacattg attttcccca 11520 gactttctcc accgcattga tgaagactct tttcgtcaag ggtcctttag tcgtctgaaa 11580 aaccaaggct tctcgctctt tcatcgggtt cgctttaagg attcgtttga gtgctctcac 11640 cgggtctaac accgaaggtt gagcttgaag gtggatgacc tgaatttcgt tcggtgaggc 11700 tgttttccct ttcctcaaat gaatctttgc ccattcgcct ttgtttgaca ttccgaattc 11760 tacgtggtgg tttaggattg caccgtcttt cttttccgtc ctgaagatct tgcctaacct 11820 caacattccc caaaacacaa tcaatccgac gtctgccact aaggtttgta cttccgattt 11880 tccataagat tcagacaata acctatatag atgtttgacc ttcactggtt tctttgccga 11940 ttccaagact tcgccctctt cttctcttcg tgtagctcga agtaacatct ttacaatctc 12000 tggatcgatt gaaattttct gtaaatgctt gactatgtgc catgcgttta tcccgtctaa 12060 gtatttgtcg attgtctttg ccgtgatagg cttctttggc ggattcggta agtttatctt 12120 tgttctaccg gcccaggtta tgaatccgta tatatcatcg ttactgattg gtttcttttc 12180 gtcgaacgtc attccttttg attcgataaa ggtgatatat ttcgagagac cggatgaata 12240 acctgatagg gtcgacttag cccagctacc aaccgctaga tgtgctcctg ggatggttga 12300 ttgcttgacc gctcttccga aatgtccagg tacttcatac gtttttgtac ttttggtgag 12360 tttctttctc tttacttctc ggggcatgat ttgattaatc tctgaagtta actgtcttct 12420 ttcatttggt tctagttact tgtcattgaa ctctccactc ggaaacctct ccttgatctc 12480 acttcgactc gcttacgagt cgtatatttt tttttttttc acacacccgg caagttggag 12540 accaaattgg ccaactccgt ggtgaacagt cgtgatctta atgaaagagg gcctgctttc 12600 tctcacgggt cacaaggggt ctcacattgg tttcaattca acttcattgc aacctccctt 12660 cccgactaca tctgtcttag gaaggcgttc agatcctttg gtaggtctac tactatctta 12720 tcttcgttct tcttttttga gactttccct cttgacaacg cgtctgccgc attgtctgct 12780 gatattaccc tcttagctgt tatcgagtac tgattcttta tcagccgttc ctggatcttt 12840 ttccattctg cattcactag gggatctttt gatttcccat ttaccactgc gttttccgtg 12900 accgttttgt ctgtcaggac caggtaattt ctaccctcta ctgattctag ctgttcaatc 12960 atcaataaac ccaggcgtac cgcgaccgtc tcggcccacg cgataccacg tctgtccccg 13020 ttcgcttctc ttgcatgcca attgggtttg agtttaaact gagaccactt ctttcctatg 13080 ataatgccta ttccatagga ggttgaagcg tctcccaccc agcctacatt tcgaacaacc 13140 ggttttggga tcaccctcag tgggtttgcc tctcgtaagg tatccagcca gatattcaaa 13200 tcttctacaa tctcttctga taatttacgt agtgcgtact ttttccccca atttttcatc 13260 attcggtaaa ttgccgcggt atatactttc atttgtggaa agacaaaggt aatgtggttt 13320 aatctaccta ccataacttc cgtctgttta aaagactgct tatctgcttg taagtacttc 13380 atgatttggt taattcttaa ttcaatcttt tcttttggca acctgacggt tttattttcc 13440 ccgttccata caaaacctag gtatttttgt tctacgtcga actcccgcca cttcttctca 13500 ttggtttcta ctcccaatct ttcacttgct gatgctattt ctttcattgt cgtttggttt 13560 gacccgtccg cgggttttat gaataatgtg tcatcgaccc atcggaagcc ctgaagtaag 13620 ttaaatttaa tcatcattat ttccttccaa gcttccgccg cctctccgaa agttccgcat 13680 ccgcctaccc cgccgaactg gactcgtgta ttggcgtaaa cttggttgtt gaagccgagg 13740 atcataagga atctccattg attcattgca acaggtattt gacgataggc ttttgcccaa 13800 tcaaatactc ctagcactag acgtccttta tacatagtaa aaaagtaggc taccttcttg 13860 aagtcatccc aagaagtttc gaagtcatct ttgtcgactc tgaagtttac tgattcgatt 13920 tcggggtcgt ttttcgggta cgaaaggtta cttataggtc gaaatgatcc gtccccattt 13980 acggctgctc caagtgggtt tgttctaaag aaacccaatt tctcgaacgc ctcttctttc 14040 gaccaaggtc cgaaaattct gcctctctta atctcagctt caatgttttc ttctatcttt 14100 tctttcgcct tcaacgctga cgtgtgatct tccggacaat aataccgcat tccttttatt 14160 tcagcatctc ttataccttg atcgaaacca tgcttaaacc cctttaggat atgctcatac 14220 tttacttcta ttccatatct tcgaagctct tgtttccaca ctgataggtt catttcacac 14280 gagggagttt ctggccaata tctgcctctt ctttctgacg gtacctctcc acttgacacc 14340 tttgggctta acctgttttg aagacaggaa ggagggtgtg gtggtatgaa ggggtcattt 14400 cgttttgatt tgggtcaagg tggcaagaat gtacacggaa ggcaaagggt atgtatcaca 14460 tgttagctac tcaatggcaa tttggcacgt gtctttcgac ttttatttca aggagcatgt 14520 gattccgact gtatcgttct tagcttacgc tcttttcccg ttcacaggtt ttccatttct 14580 atcccttcgg tcagggcttc tgcttttatc acgatggcta gcataccggt ctccatagca 14640 atcttctctt ttccttccat cgtcaaatcg tcctttatat cctccacctt tacctcttcc 14700 gttacctttg tagccacttg aggatgcatg tctattctct ttcgcatggt aagttgtttg 14760 atttgatcct gacgagttct tcggcttatt cgtgattgga cagatatttt cttttggctt 14820 cccggacgca taaggatttg tcttgtaatg acgtttgttg tagctttccg cggtcgtctt 14880 cgcctcggct aacaagatct cttgaagttc ggcatagttc ccaaccgatt tgtcaaccgt 14940 ttccctcatt acaccttgcc taactaactt gcagtacctt aacgctacca tccaaccaaa 15000 atctttacga agcttcttca ctactgctat gtgaccttca aactttgttg ctacgggcct 15060 ccaaccgcaa gctaccaggt gagtacaaaa aagttccata caatctcccc acacttcgta 15120 atcgatagtt aattcttcga ctggggcttc tcctccataa atccgtgctt cacctgactc 15180 cttcttatct gatttggtag ttcttgaaga ccacgccttt tgatccgcta ccagccattc 15240 ttcatcgaag acagtcaatt ggatgtatga agtaagtcct tttagaatta tagttagacc 15300 tggtgataaa ggcgctaatg actgtttcat ttgtgcaccc cctcctctta agatccttcc 15360 gttgtggatc acatccccgt tactcaattc taacaaacct ttcttcgaag acattatcgc 15420 gagagccttg tccgattcct cctttgacgt ggcgccttcg aaccacgctg acacatctgt 15480 tgcttcgtcg atggcgcccg ggacagtagg ctggttctgt cctgccggtg gttgaatgtg 15540 cacatcatga gacaggggcg gattggctgc tatagtttgg acgattggat ctttaactcg 15600 ttgtgagttt tgtggaggga caatttcctt gacgaatgct accaaagttc catctgacat 15660 tttggtatcg tcttcgtcta agacatatgg gttcttcgtt ggtctttcgt ccctgcctcc 15720 atccaggatc cgctttagag acttagcttc tttgtcgtcc cctctgtcgt aagcgtcttg 15780 gattaacgct ccgagggtgc ttctccttgc ctggtctgat tatttttcca atgagatgca 15840 caaacagtca gctgacgtcc tgtattcagc ttgtctttct cgtgatctaa acgcgatggg 15900 tggattcctt tctgcagtct tgttaaattt ccgcagcctt taagatatcc cggcatacga 15960 cttttggaga ctctattgtc taggcaccta ttttaagccg ggccgaggct gggttcctac 16020 tgtaagccgg accatggctg ggtccctatt ttaagccggg ccaggctggg ttcctattgt 16080 aagccggacc tggctgggca cctattcgaa gccgggccag gctttcttga agtacgttca 16140 tcttccctgt attctaccta aagcataaat ctttgggaaa aaaccgagcg taattatact 16200 ttttggactt cggcacaggt tctcttttcc atatatgttg gttaggtttc ctgcgccatt 16260 tacatcctat ctatggttta tcaaggcgga actgagaatt ttatgaagag gtggatttga 16320 aatgtgttac tgaagattgt gccgatgggt gggtacgata tcttggaatt attgtggtat 16380 atagaatgta gagaatttca tagacgaagt gtgggaatga gttgaaaagt ttatcagact 16440 tacttttatg atctgtacgc tcatttcctt gttcttcctc ttctctctcc tctgtacctt 16500 cctcgtttcc actacctatt cctccccact cttccatctc ttcttctacc gcttgaagtt 16560 cctcctccct ttcatttcgc ggttccacct gacgcctttc cttctttttc ctcaactcct 16620 gttgcgtttt cctcaagcct ttaggacgtt gtccatattt cttgattcct gacattcttc 16680 cgttttgatc accggtagga gttctttgtg acgttacgct tcgtcggccg tttccacccc 16740 gcttcggtgt tatgagtcga ttacctggtt gtacccccgt tgctgctgca tttgctctcg 16800 tcagaactct gtttgtttgt tctaattgga gctgaaatga catttttgtt gttttcttgg 16860 ttcttttttt aattttcttc tttctttcct tgatttatat cttgaaattt tctttgactt 16920 taatcggttt gatttgtgtg ttttatttta attttgttgt aataataata attttgaaaa 16980 gaacagaaaa ggttgaccta aataagattc gttggttcga atctttccgt gtgaggtgct 17040 gtggtttgac tcgtatgcgg aaataggtcg tgggagagaa ggaaacctta gagtattgct 17100 tctctacgac cagccgcggg actgtgacat gtgtcttaca tgtcacctca tagttcacag 17160 catcgtggac acacgcacca aaccgtgcct tatttggtgc acatcagacg atggcgcttt 17220 attgagacga aacgtagaat tcggagaatc tggaggagga aaatgggtga aactacattt 17280 acggaaaggg aagacagcga aaccgaacga agtacagatc atacacttac aagaacagcc 17340 ctcggtacta gatccagtgg ccgcggtaag aaggattatg gagatgaatg gcagcacaga 17400 tcgagacgag ttcctgttta agacgaagaa gggtttgctg aagaagaaaa ggtttttaac 17460 aatcctaagc gaaatctggg gtgaagcgaa gatagggact tggacaggtc actcctttcg 17520 agtaggagga gcatcgatta gagcaaactt aggaacaagt gagaaaacat tgaagaaagc 17580 aggccgttgg aagtctgatt cgtacaaaag atatgtaaag ttatttacta cggaagaact 17640 acaaaagacg gaaaagtttt tagatgctat aaataataac aaagttcgtt gaaagatatt 17700 caagaatata gatggatatt caagaaatat aatcacactc gttgagttaa atgcaccatg 17760 cattgacgca cctgagacca aagccgtgaa ggggattgtc ctccaggcca aggacggctt 17820 ttagcaagat taacagcttc cttggtagtg ggagcgtcgg acaacccaac caaccctcaa 17880 aggagggtgg gagggaagga ggctgaaagc cacccgcact cgtagagatt ggtttcgaag 17940 aaccaaaatg agcgcggggc acagcttccc ccgaagacct ctcacctcac cagaaggcaa 18000 ggtgagaggc gggtgggttt aaaactcagt taggataaca gagtgggttt tacattaaac 18060 ccacctctga tgatatcttt aagctatgaa ctaagctgaa gagtggatgg aatacacctc 18120 gaggcacgag ttggtggaaa tgtccactct cgtgaaaggt ctagattagg agtgacactt 18180 ggcgtccgag aacttctcgg aagagatttg taattcgaaa tctctctaag ccattcagtc 18240 actcctcatc tagacctcca cagcgcttag ctcaagcata aaagataaat caaaatagtt 18300 ttaaaaattc ctacccaccc acccggcgaa ttaaggaccc acccaccgac ccaggctgaa 18360 agccacccgc actcgtagag attggtttcg aagaaccaaa atgagcgcgg ggcacagctt 18420 cccccgaaga cctctcacct caccagaagg caaggtgaga ggcgggtggg tttaaaactc 18480 agttaggata acagagtggg ttttacatta aacccacctc tgatgatatc tttaagctat 18540 gaactaagct gaagagtgga tatactagtc attatatgga atatactagt atatttatac 18600 ttatactatg ctgaaaatat acccagtata tttggattta ccaaacatac ctggaagaca 18660 cctacaagtt tttgacaagt ttttataaat atactgcagt atatttcaat tatactatac 18720 tatactgcac aatactatac catgtttgga aatatactat accaagtata tttcaggtcc 18780 agtatagtat agtgcagtat agtacagtat agtatagtgg cagccttggt tctattatgt 18840 gaatgaacaa ttattcaaag ggacggtgac tctgcattgg gtagaatcaa aaaatcaaaa 18900 ggctgacatc ttaaccaagg cactgggccc attgctgttt gcggctggga ggaagaattt 18960 atgtttggag tagtttttct tattttcttt tatattttct cttttgattt tttaaagata 19020 tatgtgtgcg cgtttttttc ttatcatcag tttcattttt tgtttcgaga ggagtgctgt 19080 ggcttgtcgt ggggggg 19097 // ID AFLAV_LTR repbase; DNA; FNG; 471 BP. XX AC AY485786; XX DT 04-SEP-2005 (Rel. 10.08, Created) DT 04-SEP-2005 (Rel. 10.08, Last updated, Version 1) XX DE Aspergillus flavus LTR-retrotransposon AFLAV (LTR portion). XX KW Gypsy; LTR Retrotransposon; Transposable Element; AFLAV_LTR. XX OS Aspergillus flavus OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC mitosporic Trichocomaceae; Aspergillus. XX RN [1] RP 1-471 RA Okubara P.A., Tibbot B.K., Tarun A.S., McAlpin C.E. and Hua S.S.; RT "Partial retrotransposon-like DNA sequence in the genomic clone RT of Aspergillus flavus, pAF28."; RL Mycol Res 107(Pt 7), 841-846 (2003). XX RN [2] RP 1-471 RA Hua S.-S.T., Tarun A.S., Pandey S.N. and Chang P.-K.; RT "AFLAV, a new Tf1/Sushi retrotransposon from Aspergillus RT flavus."; RL Direct Submission to EMBL/GenBank/DDBJ (21-NOV-2003). XX DR EMBL/GenBank/DDBJ; AY485786; Positions 1 471. XX CC LTRs differ by 1bp substitution. XX SQ Sequence 471 BP; 131 A; 115 C; 107 G; 118 T; 0 other; tgttacagac ccttgtctag cgcaccttat cgaaggcgga cacacaaggc agaataacga 60 taggatgacg atggccgatc cctgggagga aggcacccga cgaatcgttt atctagtagt 120 tattcgggaa gggctacgaa cgccggtaac aacaccatca cgtgatacta ctcaggacct 180 accccagagg agtatatcgg gggtatacga cgctacgcac cgcaattgga tatactccat 240 cccctacccc taagggagtc acgatgggag tagataactc aagggtatat aaggacattc 300 attcatgtat ttagtttagt tcttcgtgat caatctacat tgttactaca gagttacctt 360 agtatcaaga ccagtctcaa ctcgttcgca ctctctcaac tattaggtat acgtacttaa 420 taggcctggc cctttggact cgagtctagt atcaacggca gtctagtgtc a 471 // ID TSE3_I repbase; DNA; FNG; 4595 BP. XX AC AJ439555; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE3_I, internal region. XX KW LTR Retrotransposon; Transposable Element; reverse transcriptase; KW gag; pol; protease; integrase; internal region; internal portion; KW RNaseH; TSE3_I. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-4595 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439555; Positions 948 5542. XX SQ Sequence 4595 BP; 1587 A; 979 C; 829 G; 1200 T; 0 other; tggtagcgcc gcagaatcac gatcaaactt tactccacaa aatttgaacg ttatacttta 60 ttttaacatc aatttaaatt attctaataa cttatcgagc atgtctaaag aatctaaatt 120 tgatagtaag gcactcaaag aattcaaaga tagtatgcca atcattttgg gtaaggataa 180 ctccacacct ccagataatt acgacgcgtg ggaagcaatg gttcaaagaa gacttgagca 240 atatggatat gatgatgaaa ttgctactga atgtatgtta atggtgatga agggccaatg 300 cgctatttgg tttcacagct acttaaccac ttacaggaac attcatggca aatccccaag 360 tactcaagaa gcatgtgctg catgcaggga acagtatggt aatgaatcat ttgatgaaga 420 gaacatccaa aatttattgg acttacaaat taatttttct aatagagaac caggtatcac 480 taagttttta caatacagac atttactaga aagaatgaac tctcatgaac taattttaca 540 catctacatt cacaccttac caccagccat tagaaactac atcttttcgc agaaggcaaa 600 agggcttgac gaagctatgg cccttactag gagaaaaatg aaggaattag aaatggacaa 660 aaccgtaagc taccgtcaga gttcagaaag gataaagtca attccaagaa agtttttaaa 720 tcaaagttta aacagaaggc cggtaagtgt ggttactgtg gtttcactgg gcattcagaa 780 aacgagtgca gacggaagaa agctggtata ccaaaccaat caaaatctac cgcagaggta 840 tttaagaatc aattacatag ttcaaaaaat tagtagagcc attattttca aaatttttct 900 atatttctac tatacctgtt tataatggca aaacgaaccc aactaatttc tatcattctt 960 acttacactt acaccaactg gcacaagaca acgagctctt gaccatgaca atacaaatta 1020 gcaaacgtaa caataaaagt acgttagcac ttgcagatac tggagcatca cataatttta 1080 tcgaacaacg atttatccaa ggtatgggac tggtgaaaca acgtttacca gaacaatccg 1140 ttgttaaggg tgcattaaac acctcgggtc taatacaaca ctatgttaga ctaaaattta 1200 aacataacaa agacctatat gaagaaatat ttctgattat tgattcacct ctcccacagc 1260 cagtcgtatt cggtataggt tttttcaaac aacatccaga aatcttgagc aggctaattt 1320 cacctcctac gtcatcttcc aaaccgatca caatggtcgg acgccgacag atactggcag 1380 atctgaagaa cccagacaac caagtgcatc tatgctggct taggaagaaa gatcaggaaa 1440 attccgagac acagtcacac aaaatcttac aacgattcga tgacgtcgta gtcgacgaaa 1500 taccacaggg taactcgaac aaaccgctag cgactcctac tgtccagcat catatagatc 1560 tggtcgaagg tgctgcaccg gttgcaaaac gagcataccg actttcagct agtgacagag 1620 atgaactgga caaacaactc tccgaattga ttgcatcggg aaacgttatc ccatcagaat 1680 caccatatgc tgcaccggtt atatttgttc agaaaaaaga tggtactaag cgcttgtgtg 1740 ttgactatag gggactcaac gacattacaa tcaaatccaa gtttccatta ccgttaattg 1800 aagacgtact ggatcaactt tcaggagcca cgatattttc taaactagat ttgatctccg 1860 gttaccacca agtcgccatc gctgacgaag accaatataa aaccgcattc accactcaca 1920 gaggacaata ttcatggcgt gttatgccgt tcggtttaac caacgcacca gccacgtttc 1980 agagactgat gaattatgtt cttagagatt acatcaacaa aatctgtgtt gtttatctag 2040 atgacatctt aatctattcg aaaaatgaaa aagagcattc agaacatgta tctacaatta 2100 ttaatgtact cagaaaacac caactgtacg ctaagaaaag caaatgcgaa ttttacgtac 2160 cgaaaatcca atttcttgga cacgaattaa gtgctaaagg tattactcca gataaagaga 2220 aaattttagc aatcaaggat tggcctacac ctaaaacata caaagatgct caaagcttta 2280 taggtttagc tggttattac agaaggttca taaaagattt ttcgtacatt gcaaaaccgt 2340 tacaccaatt ggcggcacag aaaataaaat ggacagatga atgtaaagaa tcactagata 2400 aattgaaacg acaactcagt actgcaccaa ttattattcc tttcgatcgt acaaagcaaa 2460 tcgtacttac gacagatgcc tcaagtacag cgataggagc agttttagaa ctatacggca 2520 aaggaacact taaatcggaa cttgtaggag tggtagcgta tctcagtcac ctacttcgag 2580 ataacgaatt gaactggcct attcgagaca aagaacttta cgcagtaatc tttgctttta 2640 agaaatggcg tcactactta gcaggtacac atattattat caagacagat caccactccc 2700 tgcaatattt taagacctcc gtattagata gtaacttacg tttagcaaga tggagagata 2760 tcctagaaga atttgactac gaaatacaat acattaaagg ttcaactaac catgcagatg 2820 cactatcgag acctccaatg ctgaactcgt tagtggcaag caaagtggaa ttaccagagg 2880 aagatctgag agaattggag actgcctaca gtacagaccc attcttttca aaaataatca 2940 aacatctgaa ggacccagct ctcgaaccac caattgaagt taggactcca ttacagaatc 3000 acaaacttga aggtaactta ctttattaca ctaaagaaga aaatatgcca aaacgtctct 3060 gcattccgca agcacacaac gtcaaactgt tttacactta caccatgatg ccgctgctgc 3120 tagccatcca ggacaacatc gtacacttca aagcattgct agaaaattac tactggccag 3180 gtatggaaaa tgacattaaa cgttatgtta gtacgtgtcg tgcttgtcaa caaaataaac 3240 atccggtact actgtcgcca ggcacatttc atcctttacc gagtggtact catcgatggt 3300 cacacattaa tatcgacttt ttaggtggct tagttctatc tcaaggtcat gattgtatta 3360 tggtggtcat tgatagagcc accaaaatgg cacattttat accagtgact aagggtgcag 3420 acagcgaaac ggtaattgac ttatttattg actcagtact caaattacat ggtttcccag 3480 tcgaaatact gtcagaccaa gacaaactgt ttacaagtaa actatggcaa cgtagcatgc 3540 aacgttttaa gatcgcaaca aaattcacat ctacctataa cccaagtaca gatgggcaag 3600 tcgaacgaat gaacagaaca atcatggaaa tgctacgaca ctacttaact gacaatccat 3660 cggcgtgggt aatgttgctc ccagtcgtgg aatttgctta caacaataca taccaagtat 3720 ctattcagac aacaccattc tttgctaatt atggatatca tcctcgactt ccaggcttct 3780 accatttgat cacaagtgga ggacaatcgg aaaaggaagc aagaggtact gaattagggg 3840 atctagacga cagaattatt caacagaaca atatcttttt aatcatccag gaaaggatcg 3900 cagctgctca acagaaacaa gcgttacaat acaacaagaa acacagacac gccgaattcg 3960 aagttggtga caaagtgttg gtacatcagc aagcttactg gcctggttat cataaaggtt 4020 tgaaacttca ccacatttgg tatggtccat tcccagtgac tgctgcagac ggtgcaaacc 4080 tcacattaga tttaccccgt caaaggactc gtagaaatac aacgttccac atgaaatata 4140 tcaaactata cgatgagagg actaatgcta caccaacagc accaccagtt acacccggcc 4200 agatccgcca acgcaccaac gaaatcacca aaattgtttc actcgataca cagttaaaca 4260 agatcgaggc ccaatggcaa cattgtgaac cttctgacat ctccctggtt tctccacagg 4320 atttacaacg cactccgtac ttggaacgct tattagatca ttatgacatg agtgaagctg 4380 ataaaatcgg taccaatagg ttccggaaac atcgttaagt acctacataa tgctatctat 4440 acacgtattg tgtctatcta cgttgctaat ttacactttc atagctatcc cgttatcgtc 4500 gatcctcgcc tagtaagcat aatttccaat cgcctcctat tattcttttc gtttatttta 4560 agagctgtgg gaccaactct actaaaaagg gggag 4595 // ID CIRT2_CA repbase; DNA; FNG; 1826 BP. XX AC AF205929; XX DT 11-MAY-2005 (Rel. 10.05, Created) DT 11-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Candida albicans transposon Cirt2 transposase. XX KW DNA transposon; Transposable Element; DDE transposase; CIRT2_CA. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-1826 RA Goodwin T. and Holton N.; RT "Characterisation of transposable elements of Candida albicans."; RL Unpublished. XX DR Genbank; AF205929; Positions 1 1826. XX CC 45 bp TIR. XX FH Key Location/Qualifiers FT CDS 160..1710 FT /product="Cirt2ORF" FT /translation="MAKAISDIKNGLLLSYRKAAKKYNLCHETIRKRMNGV FT LPKQIAHRGKQLFTPQQEKEIVKWIIESDEAGNGRSRHDIVEYAELFLLLD FT RQLASIGGSWFERFKKRHKEIHVVQGRKISSLRVKAATPDQIKEYFHKYDL FT IVRQHQIPNENIFNYDESGFIMGQGKSSRVAVPSYKNRTYVKSTEGRDSCT FT VIEAISMSGEKLIPGIIFKGQTLRTGWFNDDASDYYYSVSKCGYTSYWLSW FT RWLEEVFIPQVKEKTNQGKVLLIMDGHGSHKTKKFRETCEDNNIIPLYLPP FT HSTHLLQPLDLGIFGPIKYGYKVKLSKLAHALGTDPVKQQLFLLNYYEARQ FT EKLTKERIIRSWETAGLNPFDVDKVLNSSQMIAAKINKEIDDYENNRDEHT FT QQDDVEIGLYLRGTPDEELIDKLTKKIDFLELENTQLKTDVAHLQAELTSA FT KLEIDNYKEALKNKKPPGRSSAIPMDENQGFKRAAPYAKEYRQNPPKKNKR FT KALTDMTNCTNGSNSYIRSL*" XX SQ Sequence 1826 BP; 674 A; 290 C; 374 G; 488 T; 0 other; tacctcacgt gtcggaattt gttgacaccc cacgactttg gcaaaaaaaa taaaaaattg 60 taaacaaaca aataaccaat actctttcca ttttgtttca ataatacttc aatatggcaa 120 ttaaacggaa aaaaaaagca agtggtcgat gaagtggcta tggcaaaagc cataagtgat 180 ataaaaaatg gattattgtt gtcttataga aaagcagcaa agaaatataa cctttgtcat 240 gaaaccataa ggaaacgtat gaatggagta ctacccaaac aaatagccca tagagggaaa 300 caactcttca cccctcaaca agagaaggag atagtcaaat ggattattga gtctgatgaa 360 gcaggaaatg gacgtagccg tcatgatatc gttgaatatg cagagctatt tttactgttg 420 gacagacaac tggctagtat cggtggttct tggtttgaac gctttaaaaa aaggcataag 480 gagatccatg ttgttcaagg aagaaaaata tcaagtttga gagtaaaggc agcaactccc 540 gatcagataa aagaatattt tcataaatat gacctgattg tcagacaaca tcaaattccc 600 aacgaaaaca tatttaatta tgatgaatct gggtttatta tgggtcaggg taagagttca 660 agagtggctg tacctagcta taaaaataga acttacgtta agtctactga gggcagagat 720 agttgcactg ttatcgaagc aatcagcatg agtggagaaa aattaattcc ggggataatt 780 tttaaaggac aaactctaag aaccggctgg tttaatgatg atgcttcaga ctactactac 840 tcagtctcca aatgtggata tacttcttat tggttgtctt ggcgttggtt ggaggaggtt 900 tttattcccc aagtgaaaga aaaaactaat caaggaaaag ttttgctaat aatggatggg 960 catggaagcc acaaaactaa gaagttcaga gaaacctgtg aggacaataa tatcattcca 1020 ttgtatttac cgcctcattc aacccatttg ttacagcctt tggaccttgg aatctttgga 1080 ccaataaaat atggatacaa agtaaaattg tcaaaattgg cccatgccct tgggacagat 1140 ccagttaagc agcagttatt tttactgaac tactatgaag caagacagga aaagttaacc 1200 aaagaaagaa tcattcgatc ctgggaaact gctggcctta atccatttga tgttgacaaa 1260 gtgttaaatt cgtcccaaat gattgcggcg aaaatcaata aagagataga tgattatgaa 1320 aataatagag acgaacatac tcaacaggat gatgttgaaa ttggactata tttaagggga 1380 acgccagatg aagagcttat tgacaagttg acgaaaaaaa ttgattttct tgaattggaa 1440 aatacacaat taaaaacgga tgttgcacat ttgcaagcag aacttaccag cgctaaatta 1500 gagattgaca actataaaga agctctaaag aataagaaac caccaggaag aagttctgcc 1560 attcctatgg atgaaaatca aggcttcaag cgagcagcgc cctatgccaa agaatatcgt 1620 caaaacccac caaagaagaa caaacgaaaa gctttaacgg atatgacaaa ttgtactaat 1680 ggtagtaata gttatatcag aagtttgtag gaatttagtg aatagtcgta gagttagagt 1740 tgaatttatg tgttttatga ttattgtcaa attagtaatt ttttgccaaa gtcgtggggt 1800 gtcaacaaat tccgacacgt gaggta 1826 // ID TAD1_NC repbase; DNA; FNG; 7029 BP. XX AC L25662; XX DT 26-APR-2005 (Rel. 10.04, Created) DT 27-APR-2005 (Rel. 10.04, Last updated, Version 1) XX DE Neurospora crassa Tad1-1 LINE-like element ORF1 and ORF2. XX KW Non-LTR Retrotransposon; Transposable Element; KW reverse transcriptase; endonuclease; TAD1_NC. XX OS Neurospora crassa OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; OC Neurospora. XX RN [1] RP 1-7029 RA Cambareri E.B., Helber J. and Kinsey J.A.; RT "Tad1-1, an active LINE-like element of Neurospora crassa."; RL Mol Gen Genet 242(6), 658-665 (1994). XX DR Genbank; L25662; Positions 1 7029. XX FH Key Location/Qualifiers FT CDS 158..1618 FT /product="TAD1_NC_1p" FT /translation="MSCDERSDGVVSSLPMAIDGGARGLENSVHNPLAEIS FT ACNDPEAALTAKTSDKTEEDDETLKKFIARANKSTDYDTVSTEDRRWAREL FT LLEFAKARVGKSGSTRPEADKAGTDQFVTRKDFDDLKKDILKEIKKGAQEA FT PKRWADVVAKASPSKIGATLQQPPTTTKKFVPSNLERQLTIKGATIAAEFV FT NRSNEDTKTTLATCLGKKKPGLIVRAATRMPTTGDYVIVFDEPTRTWCWRN FT QAWAKEVFGPDAFITMSTVGVLVRGVPWDSVDNYTTAEAISNVAKERNPEA FT SIIRVRPWKRRDGESRGLLLVEVATASAACFLQDNLFLWDGGAYPCEPFQA FT SSNVQQCFRCWGIGHTARFCRQDDICARCGEAKHEGDRFGEVNCPSNDDKS FT LVYCKPCGKKGHCAYNRKECPILRKAIAKASVAHAERPRAFAPARTQPERC FT WSRRQRLWTRVSCQTPPPAPVLLLPWRDMLEEAQRGDGRER*" FT CDS 1812..5276 FT /product="TAD1_NC_2p" FT /translation="MVQLKILYWNVGKSYERGKLLLEQEETYDIVAIQEPG FT RNLNGDIYRPRGGRYFGVDCSEKGRAVIYVNKKWNLKDLDFQAGKDWTAVT FT FKNLRDPTTVYSIYSPILTQGTPEHQWGSPLLEFIEAGPPAGNLVAVGDLN FT LHHPDWDLENRTSPGAARLLTWARRWRLSLLTPRGEPTRLGNATRGERDGT FT IDHAWLSPGVEAEYWGAQRCEQTGSDHCPQEIWVQVGRKNKKAEEEGGYSW FT SLMDTEKVKEASEKRISVPERIDTVEDLELAFRRLDGELTSIAEEFVPHRK FT KGRGRRANWWTLECKTATKEARRTYWEWFGCRTASNWREFVEATMKKKRII FT AKAQQATWRDGVAEASKNPSRLWPLERWARTRSHRPADPPKLPALQTQEGA FT AEIGDHSGKAEILADRFFPKVEVPTDHLPDWTEPPEGVDPIVISELVDEED FT VQDVLSRMAPNKAPGIDWYSNRFLKLCGQPFRQAMACLASASLRLGHFPQR FT FKDAKVVVLKKPGKSAAQQKLAGAWRPISLLSNVGKILEALVAKRLTQAAE FT EFNLLPEGQMGNRAGRSTEFAVRVVTDAVHTAWKLGAVTSLMLLDLKGAFD FT RVNHRWLLHTLWEMQLPTWIIRWVASFVAGRRGSLFFDDETSRPYAITAGV FT PQGSPLSPILFILFITPLYRKLATIPNTITVGFADDTNVVAVARTTEENCR FT TLQAAWEVCSGWAGARGMEFEATKTELMHFTRTRAPRTETLQLGDTVLQPT FT ESTRFLGVWLDRKLNYRAHAEAVKQKMTTQTNALTRLAAKTWGCSFARARE FT IYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKA FT TPVRNLETETFCPPLDLYLNKRVRAFEERLARTDQARFVRGTAAWVASCVQ FT ARRARGRPPADKPESGAAKARWAEAWAPTEKLLAMAAGPPPESGTPPPASQ FT IPEPTAADREEWLEDATNREWVSRYNHHLAAAVAKSGQRYEFTIADLNPKF FT SGEAIQRHMVGTKKKKGRRRKPEEEEDEPYPLTKAKSSLLVQARTEVIGLR FT AFLHRRKVPDVLTPICACGLEKETFAHIVLNCLDAETLFWSDPDSWPLSKE FT ELQEYLDDGVKAERILSWALRLGRLKEYRLAVELEEDQREELARHS*" XX SQ Sequence 7029 BP; 1816 A; 1864 C; 2204 G; 1145 T; 0 other; caaattgcct actaattatg aacgttttct ctatactatt aattataata aaagaaactg 60 ctttgaaacc ggaaacgccg atttctggtc gaggagtgct ccaaaacgaa aactgacaac 120 ggcaatcgac tcaggagggt cgtttacgtc cctcacgatg tcctgcgacg aacgcagcga 180 cggcgttgtg tcgtcgttgc cgatggccat cgatggcggt gctcgtggac tcgaaaacag 240 cgtccacaac ccgctcgcgg aaatctcagc atgcaatgat cccgaagccg cactcactgc 300 gaagacctcg gataaaacgg aagaagacga tgaaacattg aagaagttca tcgccagagc 360 gaacaagtct acggactacg ataccgtctc gaccgaggac cgtcgttggg ctcgagagct 420 gcttctcgag ttcgcgaagg cacgcgtcgg aaaaagtggg tctacgcgac ccgaggctga 480 caaggctgga accgaccagt ttgtcaccag gaaggatttc gacgacctga agaaggatat 540 cttgaaggag atcaagaaag gcgcccaaga agcgccgaag cgttgggccg atgttgtggc 600 gaaagccagc ccgagcaaga tcggtgccac cctccaacaa ccacccacca ccactaagaa 660 gtttgtcccc tccaacctcg agcggcagct cactattaag ggagcaacga ttgccgccga 720 gttcgtaaac cgttcgaacg aagacacgaa gacgaccctg gccacttgcc tgggcaagaa 780 gaaacctggc ctgatagtcc gcgcggctac caggatgcca acgaccggag actacgtgat 840 cgtattcgac gagcctacac gtacctggtg ctggcgaaac caagcgtggg ctaaagaagt 900 tttcggcccc gatgctttca ttaccatgag caccgtgggc gtgctggttc ggggcgtgcc 960 ctgggacagc gtcgataact acactacagc ggaagctatc tcgaacgtag caaaggagag 1020 gaacccggag gcatctatta ttagagttcg gccatggaag agaagggacg gagagagcag 1080 aggcctgctc cttgtggaag tcgccaccgc atcggcggcg tgcttcctcc aggacaacct 1140 ctttctctgg gacggcggcg catacccatg cgaaccgttc caagcctcga gcaacgtcca 1200 gcaatgcttt agatgttggg gaatcggaca cacggcaaga ttctgccgtc aagatgatat 1260 ctgcgcccgc tgcggcgaag ccaaacacga aggagaccgc ttcggcgaag tgaactgtcc 1320 gtccaacgac gacaagtcac tcgtctactg caagccgtgt gggaagaagg ggcattgcgc 1380 gtataaccgc aaggagtgcc ctattctccg gaaggcgatt gcaaaggcgt ctgtcgcgca 1440 cgccgagagg ccgcgggcgt tcgcccccgc aagaacccag ccggaaaggt gttggagccg 1500 acgacagaga ctgtggacga gggtgtcctg ccagacgccc cccccagctc ccgtactgtt 1560 gctgccttgg agagacatgt tggaggaggc gcaaagaggg gacggccgag aaaggtaatc 1620 ggcccgtcca cccggccgaa gcctatgacc ccacaaggtc cgatagatgg atactataca 1680 cgctcgcaga gcgtcggggg aagtcggccg cgtggcggca atggcgccca cacgaccaca 1740 gcccccccca gggaagcagt acccccatcc tccgccgagg gatcagaagg aaccccatcc 1800 cagggtaact aatggtccag ctaaaaatac tctattggaa cgtggggaag tcgtatgaga 1860 ggggaaaact tctactcgag caagaggaga cctacgatat cgtagcgatc caggagccgg 1920 gtagaaatct gaatggggat atctatcgtc ctagaggcgg aaggtatttc ggggttgatt 1980 gttcggagaa gggaagggcg gtaatatatg tgaataagaa atggaatttg aaggacctag 2040 atttccaagc cggaaaggat tggaccgcag ttacgttcaa gaacttgagg gacccaacga 2100 ccgtctattc tatctactct cctatcctta cacagggaac gccggaacat cagtgggggt 2160 caccgctcct cgaattcatc gaggccgggc ctccggcggg aaacctagtc gctgtcgggg 2220 acctcaacct ccaccatccc gattgggatc tggagaacag gaccagccca ggggccgctc 2280 gcctccttac atgggcacga cgctggagac tcagtctact caccccccgt ggtgaaccga 2340 ctagactcgg gaacgcgaca cgaggagaga gggatggaac gatcgaccat gcatggctat 2400 cacccggggt cgaagccgag tactggggag cgcagcggtg cgagcaaacc ggctcggacc 2460 actgccctca ggagatctgg gtccaagtag gaagaaaaaa taaaaaagcc gaagaagagg 2520 gaggatatag ctggagtctt atggacacgg agaaggtgaa ggaggcgtcg gagaaacgga 2580 tatcggtccc agaaaggatc gacacagtgg aggaccttga gctcgccttt cgcaggctcg 2640 acggagaact tacaagcatc gcagaggaat tcgtcccgca ccggaagaaa ggtcgaggga 2700 gaagagcgaa ctggtggacg ttagaatgta agacggctac gaaagaagcg cggaggacgt 2760 actgggagtg gttcgggtgc cggacagcat caaactggag ggagtttgtc gaagctacga 2820 tgaaaaagaa gaggattatt gcgaaggccc agcaggctac gtggcgcgat ggcgtcgccg 2880 aggcctcgaa gaacccaagt cgactctggc cactagaacg atgggcccgg acccgaagcc 2940 accgaccagc agatccgccc aaactaccag cccttcaaac ccaagaaggg gcagcagaaa 3000 tcggagacca cagtggcaag gccgagatcc tagccgaccg ctttttcccg aaggtagagg 3060 tcccaacgga ccacctgccg gactggaccg agccaccaga gggcgttgac ccgatagtca 3120 tcagcgaact agtcgacgag gaggacgtcc aggacgtgct ctcccggatg gcgcctaata 3180 aggcccccgg gatcgactgg tactcaaaca ggtttctgaa gctatgtggg cagccgttcc 3240 ggcaggccat ggcatgctta gcatccgcca gcctccggct cggccacttc ccacagcggt 3300 tcaaggacgc gaaagtggtt gttctcaaga agcccggaaa gagcgccgcc caacaaaagt 3360 tagcgggcgc atggagacca atatcgctac ttagcaatgt aggaaaaatc ctcgaggcac 3420 ttgtggctaa gagacttacg caggcagccg aagagttcaa cctcctgcca gagggccaaa 3480 tgggcaaccg ggcaggccgt tcgacagagt ttgcagtccg ggtggtcacc gatgcggtgc 3540 atacggcctg gaaactcggg gccgtgacgt cccttatgct cctagatttg aaaggagcgt 3600 tcgatagagt taaccatagg tggcttttgc ataccctatg ggaaatgcag ctcccaacat 3660 ggattattag gtgggtagcg agcttcgtcg ctggtagaag aggttccctc ttcttcgacg 3720 acgaaacgtc ccgcccctat gcgattaccg ccggcgtacc gcaaggctcc cccctctccc 3780 ccattctgtt cattctcttc atcaccccgt tataccggaa gttggcaaca atcccgaata 3840 caattacggt cggcttcgca gacgacacca acgtcgtagc ggtagcccgt actactgaag 3900 agaactgccg gacactacaa gcagcgtggg aggtgtgctc gggatgggcc ggggcgagag 3960 gcatggagtt cgaagcaact aagacggagc taatgcattt cacgcggacg agggcaccaa 4020 gaacggaaac tctccaactc ggggacaccg tacttcaacc gacagagtcg acgcgattcc 4080 taggggtctg gctggaccgt aagctcaatt atagggctca cgcggaagcg gtgaaacaga 4140 agatgacgac ccagacgaat gcacttacaa gactagcagc gaagacatgg ggttgctcct 4200 ttgctcgggc aagggaaata tacactaaat gtattcgcag cgctattgca tatggagcct 4260 cagcattcca ccagccgacc gaagtctacg ggaaaccacg agggatcgta attgggctgg 4320 cgaaatacca gaccaagtgc ttgagagttg tcgccggggc gtacaaggct acgccggtac 4380 gaaacctaga gacggaaacc ttctgtccgc cgctcgacct ctacctcaac aaaagggtcc 4440 gggccttcga ggaaaggctc gcccggacgg atcaagccag gttcgttcga gggaccgcag 4500 cctgggttgc cagctgcgtc caagcccgaa gggctagagg tcggccaccc gccgacaaac 4560 cagaaagcgg tgcggccaag gctcggtggg ccgaggcatg ggcaccgacg gagaagttgc 4620 tggcgatggc agccggtccc cctccggagt cagggacccc gccaccagca tcgcagatac 4680 cggaacctac ggccgccgac cgagaggagt ggctggagga tgcaacgaat cgagaatggg 4740 tgtcgcgcta caaccaccac ctagcggcgg cggtagccaa atcaggccag cggtacgaat 4800 tcaccatcgc tgacctcaac cccaagttta gcggagaggc tatccaacga catatggtcg 4860 gtacgaagaa gaagaaagga agacgtcgaa aaccggagga agaagaagat gagccgtacc 4920 cactaaccaa agcgaagagc tccctcctag tccaggccag aacggaagtc atcggcctcc 4980 gggcattcct ccaccggagg aaagtaccgg acgtcttgac gcccatctgc gcctgcgggc 5040 tcgagaaaga gaccttcgcc catattgtcc taaattgcct cgatgcggag actcttttct 5100 ggtcggaccc cgacagctgg ccactatcaa aggaggaact ccaggaatac ctggacgacg 5160 gtgtcaaagc ggaaaggatt ctgtcttggg cgttgaggtt agggaggctg aaggaatatc 5220 gtttagcagt cgaactagag gaggatcagc gagaggaact cgctaggcac tcctaggagg 5280 gaacggaaca tcaacgacac tagaacaacc ggaaagggaa cgaggaggag atgattgtgc 5340 taactacgtg tgctacctaa accgcaagcc acagcaggga ccgaagcacc atctaacgaa 5400 gcgcctagtt gccgctaaga agctgctcga gcagcgccaa catgcgagcc tggttcgcgg 5460 tgacctcacg gcgccactga atccagtcct cgttcatgac ggggcggccg ggagtatcga 5520 cggccatagg gctgccagga gcggaaccac caccaccacc accagggaca gcacgggcag 5580 gagtagcata accgctaccg ccggacacga cacgcgcagg agtgatagcg ccaccgctgg 5640 aaccagaagc aatccggacc ggattcatgg caccgccgcc ggagggggcg cggccgtgac 5700 ggacatccct cacgatcaac tcgcggtagc ccttctgctg gaggtcggcc acgttgagat 5760 gcgggggacg gggaagagtg ccaaggttgg tgggcaggcc atcccgctcc agacgcgcgt 5820 gcatacggtc gatgaaagag ttggcagcac gaacgaagga atccagtctc cgattgaacc 5880 caggctggcc acccgaaagc accgcagcag ctgccgccta gacagcgttg cgggcgtcgc 5940 aaaggccagc ggggacgtcc agcatgtact tgccggcggt gtgggagcag gtcgcgttct 6000 gggtgccagc agctagatgc agacgttaga tggcgacgaa ggaaggagaa agaaagggag 6060 gaacctaccg gacgccgaga tgtggcagac ccgcttgacg acagcctcgc ggaatgcgac 6120 gacagaggca ggcttatcgc cggtcctcgg gaaagcagcg aggtccaagg tgtggcagag 6180 gcaagggatc tcacggacga cactagccgg gttaacgcac aactccgaaa agcgagggga 6240 ggaaacatac cggttctggg gaaccacgag gtcaggaagg gcgcgaagga ggcgagcgac 6300 ggccgcaggc tccaagggag ccggggacgc agggcccggg gacggatcgg gggaggagac 6360 ctccacgtcg gaggtcagat cgatcgggct gggacgatgg cggccggagg aagccatctt 6420 gaaggaggtt gcgatgggga gaaggaagga ggaagccagg aacgggcgcc gcagggagga 6480 ttatatagac gaggaaggag gcccttgcgc cgttgcaaat ggaggtggag ccgcggggta 6540 gagagtgaag ggacggggcg gaggtaaaag caaacgggga gtgaaggcgg ggaagtgggg 6600 agacagacgg gaggctggga taagggggcg gagagaaggg aaaggaagga gcggtggaag 6660 acgggacgga gaagcggcga gggcggcgct cggggctcga atcctgttcc tattatccgt 6720 attgttctag tgttgggatg acgcagcggt ggaagagacg agatcggttc gctgtggcgg 6780 tgggtgagaa ccgtcatagc tgtaagcaaa gtaggagcgg cgtggagaac tacgaccgag 6840 atggagctgg gggttttcat ccgacggtgc ttaacaccgt acggttttcc cctccagaaa 6900 actggagaag gaccccatgc caataaggcg ctatagttat agcataggga ataagactat 6960 taattaatta attattaatt ataatatcgc cgacttttaa taaaagggtt actataaatt 7020 aattataag 7029 // ID Mariner-6_AN repbase; DNA; FNG; 1863 BP. XX AC . XX DT 09-JAN-2004 (Rel. 9, Created) DT 09-JAN-2004 (Rel. 9, Last updated, Version 1) XX DE DNA transposon. Mariner superfamily. Pogo clade - a consensus DE sequence. XX KW DNA transposon; mariner superfamily; Mariner-6_AN; Pogo clade; KW transposase. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-1863 RA Kapitonov V.V. and Jurka J.; RT "Mariner-6_AN, a family of DNA transposons in the Aspergillus RT nidulans genome."; RL Repbase Reports 3(12), 214-214 (2003). XX DR [1] (Consensus) XX CC DNA transposon. Mariner superfamily. Pogo clade. CC TA target site duplications. 44-bp TIRs. CC The 456-aa transposase is encoded by 3 exons (pos. 95-920, CC 1080-1550, 1637-1710). XX SQ Sequence 1863 BP; 553 A; 454 C; 415 G; 441 T; 0 other; acgtggttgg taagcgagct gcgcatgtaa gcgagctgcg cacccaacca cttttttaca 60 tgctgacgcg gtcatctatc ttccaacagc caccatgccc cgagttcgcg ttagttcaag 120 ccaaaattgc catgagaagg aaggtcggct cctactggct gtacaggcta ttaaaaaaaa 180 ggagattaca tcaatacgcg aggcagcacg tcgcttcaat gtgcctgaat ctacactacg 240 tacgcgacta cgcgggacta caaatcgcgc cgaatctcgc gcaaatggcc ataaattgac 300 tgagattgaa gaggaagtgc ttaagcagtg gattctctct ttagatctac gcggagcagc 360 tcctacaaaa gctcatgtac gagaaatggc taatattctg cttgcaaagc gtggttccac 420 cccaatccag actgtcggcc agaaatgggt atataattat actcaacgcc acccggagct 480 tgagtctcgc ttgtcaaggc aatacgactg ccagcgagca aagcaagaga acccaaaggt 540 tattcaagca tggtttaaca ccgtacgagc cacaatcgaa caatacggga tcctaccgga 600 cgatatctac aactttgatg agactggctt tgcaatgggc ctttgtgcac atcagaaagt 660 gattaccaag tcagaatcat gtggccgaag accagttcta cagccaggaa accgtgaatg 720 ggttactgca attgagtcaa tcagtgcttc tggatgggca cttccaccaa cacttatctt 780 taagggcaag cagtataacc aagcatggtt tacaggcctt ccgcccgact ggcgatttga 840 aattagtaca aatggatgga caactaatga aattagcctt cgctggcttc agaagcaatt 900 tatcccgtca acagagcatc gtacgcgcgg aagatatcaa cttctagttc ttgatggcca 960 tggaagccat cttacaccag agtttgatca aatctgtaca gatcataata ttataccact 1020 ctgcatgccg gcacattcct cccatcttct acaaccactt gatattggat gttttgcagt 1080 tttgaagcgc tcgtacgcca gcttggttga tcagaaaatg cggcttggca tcagccatat 1140 tgacaaactt gatttccttg cagcctatcc acaagctcga atcagcacat ttaagctgga 1200 tacaatcaga aacagttttc gagcagcagg actagtgcca ttgaatcctg aaccagtgct 1260 ttcaaagctt agtattcagg ctcgtacgcc tacaccccct ggaagccgtg gcagccaggc 1320 aagcactttt tgcccacata caccagcaaa tgttgatgag cttctaaagc aagcttcttt 1380 actcagagat tttctcaaac agcgctcaaa aagtccacca tcaccgtccc ataatgccct 1440 aaaccagcta attaaaggct gtcaaattgc aatgcaaaag ggcatactat tggagcaaga 1500 gaatagggcg ctacgtgctg aaaatgctat acaaaggcga aagcgagctc gtacgcatag 1560 atggatagct catgataatg gtctgtctgt acaagaggct acagagctcg aggaagctca 1620 taatgcgtct tttcaggcaa tacctggtcc atgcgggcca ccagcagaag gtgcacaaac 1680 accaaaggca cgggcattac ctacatgtag tacctgccat agaattgggc atagaagaaa 1740 tgcttgtcca aataaataat aattaatata aaggcgttgt ggttgattaa aaggtcaaaa 1800 tatgggaaat ctgtatgcag gtgcgcagct cgcttacatg cgcagctcgc ttaccaacca 1860 cgt 1863 // ID Copia-45_MLP-LTR repbase; DNA; FNG; 910 BP. XX AC AECX01001077; XX DT 22-APR-2011 (Rel. 16.04, Created) DT 22-APR-2011 (Rel. 16.04, Last updated, Version -1) XX DE LTR retrotransposon from the Melampsora larici-populina genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-45_MLP_; KW Copia-45_MLP-LTR; Copia-45_MLP-I. XX OS Melampsora larici-populina OC Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; OC Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora. XX RN [1] RP 1-910 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Melampsora larici-populina RT genome."; RL Direct Submission to RU (20-APR-2011). XX DR Genome; AECX01001077; Positions 182454 183363. XX SQ Sequence 910 BP; 351 A; 157 C; 195 G; 207 T; 0 other; tgtaaagatg agaggtgcag gctcgagatg agctgagtat cgtggctatg ccgaaatata 60 gcagatctgg ggaaatcagg tctgatgtga gtttgggcaa caggcctcac tcagctaaaa 120 gatgctaata agaatgagac aaacctgggg aaatcaggtc tgatgtgagt ttcggcaaca 180 ggcctcactc agctaaaaga tgctaataag aacgagacaa acctgtgcga atgcaacaag 240 gtcaagtaaa gtgatcaaat gaaaagatga gtaaacacta aaataagatt cttttcgatg 300 atttgtaaac taatcatacc tggggaaatc aggtctgatg tgagttttgg caacaggcct 360 cactcagcta aaagatgcta ataaaaacaa gacaaaccta gcgcaacaac aattagtaaa 420 aatgaaagaa agagaaagat atagtgaaat gacacaaacc tgtgcgaatg caacaaggtc 480 aagtaaagtg atcaaatgaa aagatgagta aacactaaaa tactgaagaa acatatataa 540 gagctaatgg tcaggctgat gatgttagga aggataggtg taaggaaaat cactcacaga 600 ttctttttga tgagggaaaa gaatctgggt gttgaacaac agtagctagt tatacaagca 660 tcacacacaa tcgtcaatac gtaacatatt aaaagagaaa gaaaaacaca cagctcaagt 720 cacacgactt attcccaaaa caaacataca cttccgtaac agatcatttc ataactcaac 780 tctccttcat ttcctcttga tttgtaacag tcgtacataa tgtgtaataa atgccggaag 840 tccttgacga gtgtaattag agatgtcaaa gcggacaccg tggtaggttc agtatcacag 900 tatcacaaca 910 // ID TCN1-I repbase; DNA; FNG; 5192 BP. XX AC . XX DT 30-MAR-2005 (Rel. 10.03, Created) DT 13-JAN-2011 (Rel. 10.03, Last updated, Version 3) XX DE C. neoformans LTR retrotransposon - internal consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; reverse transciptase; internal portion; KW TCN1-LTR; TCN1-I. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-5192 RA Goodwin T.J. and Poulter R.T.; RT "The diversity of retrotransposons in the yeast Cryptococcus RT neoformans."; RL Yeast 18(9), 865-880 (2001). XX RN [2] RP 1-5192 RA Loftus B.J., Fung E., Roncaglia P., Rowley D., Amedeo P., RA Bruno D., Vamathevan J., Miranda M., Anderson I.J. et al.; RT "The genome of the basidiomycetous yeast and human pathogen RT Cryptococcus neoformans."; RL Science 307(5713), 1321-1324 (2005). XX RN [3] RP 1-5192 RA Gentles A. and Jurka J.; RT "C. neoformans non-LTR retrotransposon TCN1."; RL Direct Submission to Repbase Update (15-MAR-2005). XX DR [3] (Consensus) XX CC 501 bp LTR deposited as TCN1-LTR. XX FH Key Location/Qualifiers FT CDS 164..1462 FT /product="TCN1-I_1p" FT /translation="MSGPSTRSGRAVEKVEKGKEVEHTLDDDHNPAGSFNT FT NPQSDPFTADNTSNDTQTQLEMMRNHIARLEQQKEELTHKLEESKVERQMF FT DNSEDNEGENEQELDEEDEEPRSSRDLSAQTPYPEVKREYSRQRTSVPSSR FT PQEPKVSQPEYYHGQYTKLSTFITQVTMVITLQPSRFPTETSKVLYAGSFL FT RDTPFLWFQPFVTIDPQPKFMLDFKKFCAELRKNFGDPDEEQTAERQLNTV FT RQQGSVSSYLATFMRYATLVQWNDEAKKACFYKGLKDDIKDELARLPKAKS FT FKNLQDMAIRIDSRRYERVLAKRDQQPKALFNATRSDYTRTSYNNNHPNNF FT RRFSAANSMPIRSTTANTTFNKEVTPAVNLRAAFVPSSARITRRGRLTPEE FT YQRRKDHNLCLYCADKNHQVAKCPVVPSQQSNTTLPSKN" FT CDS 1468..4947 FT /product="TCN1-I_2p" FT /translation="MLLSAKVEEGSREQERTIKPANTDSCEYLQTLEDNNK FT NNKNQLTIDFLFHNNVYQALIDSGASTNFIDKRFVQTFNLKTTKIEDSIPL FT YLFNAAGQRTIIEEEANILVNFQKPFGHTLLRLLITDIGSYPIVLGITWLQ FT EHNPSISWETLSIHPPVSQTTSANLAMVITNDKPPKENTDAEIVPKEYHQY FT LDVFDKKSADTLPEHRSFDHHIPLEEGKNPPFGPIYNLSETELEALREYLD FT ENLKKGFIRPSESPAGAPILFVKKKDGSLRMCVDYRGINKITIKNRYPLPL FT IAELLDRLKSAKVFTKIDLRGAYNLLRIKAGEEWKTAFRTRYGHFEYLVMP FT FGLTNAPASFQHLMNHNFRDLLDIFVIIYLDDILIYSPDLETHQSHVIQVL FT DRLRQTQLYAKASKCEFHQTSVEFLGFVVSDQGLSMDTKKVKSITEWPTPR FT NLRDTQSFLGFCNFYRRFIKNYSSIAKPLIDLTKKDLPFVWEEPQRTSFEA FT LKKSFTSVDLLRHYDPTKQLILETDASDYAIAGILSHEIDKKLEPVAFFSH FT KMLPAELNYPIHDKEMLAIVSAFKEWRHYFEGARETIRVYTDHRSLEYFMT FT TKQLNRRQARWSEFLADFDFNIIYRPGVQGTKPDALTRRHDYHPLEKGSSL FT TTAANPQNFQTLLRPGQYLGTATTGLDRLEISSPIKSLLKTGLETDESAKP FT FLDKANHPSEAHPYTRDDEGLLRYGESFYVPANNELRTLVTKECHDALTSG FT HPGRRKTIQLIRRHYWWPGLKGFVNHYIDSCDLCCRTKTRRHQPYGELKSL FT PIPPYPWSSVSMDLIEQLPPSHGYNTILVIVDRLTKMALFIPTTTSLNAEE FT LAQLYVTHVFSKHGIPTSIVSDRGSEFTSRFWRAFTQLLHIELELSTAFHP FT ETDGQTERVNQVLEQYLRLYTDYKQKEWAPLLPVAEFTYNNTPHSSTTMSP FT FFANKGYHPRASFTPDDNVPIFSPPARASITDLSKLHEHLKIEMSKAQESA FT ALQFDKHRAPLPEYTIGDKVWLSARNIKTKRPTKKLDHRYLGPYTIIARVS FT SHAYRLELPKSMRIHDVFHVQLLEKYIENEIPGRTQVAPSPIEVEGDLEYE FT VECILDHRFYRKRRQFLIKWLGYSAEHNSWEPETALENASEIVDQYKSTHR FT L" XX SQ Sequence 5192 BP; 1606 A; 1487 C; 945 G; 1154 T; 0 other; gtaaatattg atcttccaca cttgtggttg gttggtatag acttcaagta ccttttacct 60 tcgacacata cgtataccct tatacaactt catcaacaac ttcatcaaca acctcagcca 120 cctataacct cataccacca cttcgtatac catatcctat atcatgtcag gtccatccac 180 tcgtagtggt cgagctgtgg aaaaggtcga aaaaggcaag gaagtagaac ataccctcga 240 tgacgaccac aatcccgcgg gttcattcaa caccaatcct caatccgatc catttaccgc 300 cgacaacaca tcaaacgaca cccaaaccca actcgagatg atgcgcaacc atattgcaag 360 acttgagcaa cagaaggaag agttgacgca taagttggaa gagagcaaag tcgaacgaca 420 gatgtttgat aatagcgaag ataatgaggg cgaaaacgaa caagaattgg atgaagaaga 480 cgaagaacct agatcaagcc gcgacctgtc agcgcaaaca ccatacccag aagttaaaag 540 ggaatacagc cgacaacgca cctcagtacc ctccagtaga cctcaagaac cgaaggtatc 600 ccaacccgag tactaccatg ggcagtatac caagctctca acctttatca ctcaagtgac 660 aatggtgatt accctccaac cttctcgttt ccctaccgag acctccaaag tcctatacgc 720 cggatctttc ctccgagata ccccattctt atggttccaa cccttcgtaa ccatcgatcc 780 ccagcccaag tttatgctgg acttcaagaa attttgtgcc gaattaagga agaacttcgg 840 agatccagac gaagaacaga cagcagaacg acaactaaac actgttcgtc agcaaggttc 900 tgtatcctca tacctcgcaa cctttatgcg ttatgccacc ttggttcagt ggaacgacga 960 agcgaagaag gcttgcttct acaagggctt gaaggatgac atcaaagacg aacttgccag 1020 actacccaaa gccaagtcat tcaagaacct ccaagacatg gcaatccgca tcgacagccg 1080 tcgatatgaa cgggtattag caaagcgaga ccagcaacca aaggcgcttt tcaacgccac 1140 ccgaagcgac tacacccgca cctcttacaa taacaatcac cccaacaact tcagacgttt 1200 ctctgcggcg aatagcatgc cgataaggtc taccactgcc aacaccacct tcaataaaga 1260 ggtgacgccg gcagtcaacc tgagggctgc atttgtccca agttcagcta ggataaccag 1320 acgtggacgt ctgactccag aagaatatca gaggcgaaag gatcataacc tctgcctcta 1380 ttgcgccgac aaaaaccatc aagtcgccaa gtgcccagtg gtcccctcgc aacaatccaa 1440 tactactctc ccttcaaaaa actagatatg ctcttgtctg ccaaagtcga agaaggtagc 1500 cgggaacaag agcgtactat caaaccggcc aatacagact cctgcgaata tctccaaact 1560 ctcgaagata ataacaaaaa caacaaaaac caactcacaa tcgactttct ctttcacaac 1620 aatgtttatc aagctttaat cgattccggt gcctctacaa acttcatcga caaaagattc 1680 gtccagacct ttaacctcaa aaccacgaaa atagaagatt cgatcccatt atacctattc 1740 aacgctgcgg gtcagcgaac tataattgaa gaagaagcca acatcctggt caacttccag 1800 aaaccattcg gacacacctt actccgactc ctcataaccg acatcggctc ctaccccatc 1860 gtcttaggta taacctggtt acaagagcac aatccgtcca tcagctggga aacactttcc 1920 atacacccac ctgtatcaca gacgacgagt gccaacttag ccatggtcat caccaatgac 1980 aaacctccaa aagaaaacac cgatgccgaa atagtaccta aagaatacca tcaatatcta 2040 gatgtattcg acaagaaaag cgccgataca ctcccagaac ataggtcttt cgaccaccat 2100 atccctctcg aagaaggaaa gaacccacct tttggtccca tatacaatct ctccgaaaca 2160 gaacttgaag ctctccgcga ataccttgat gagaatctta agaaaggttt tatccgaccg 2220 tccgaatcac cagccggagc acccatactc tttgtcaaaa agaaagacgg atcgcttagg 2280 atgtgtgtcg attaccgggg aatcaacaag atcaccatca agaatcgcta tcctctacca 2340 ttgatcgccg agctcctaga tcgactcaaa tcagccaaag tattcaccaa gatcgacctg 2400 cgaggagcct acaatttact tcgcattaag gcaggcgaag aatggaaaac agctttccgt 2460 actcgctatg ggcatttcga atatttggta atgccgtttg gcctcaccaa tgcccctgca 2520 tccttccaac atctcatgaa ccacaatttc cgcgacttgc tagacatatt tgttatcatc 2580 tacctcgacg acatcctcat ctacagccca gacttggaga ctcaccagtc acacgtcata 2640 caagtcctag atcgcctccg ccaaacccaa ttatatgcca aagcttcaaa gtgcgagttc 2700 catcaaacct cagtagagtt cctaggtttc gttgtcagcg atcaaggtct atcaatggac 2760 accaagaaag taaagtctat cacggaatgg ccgacacctc gcaatctccg tgatacccaa 2820 tccttccttg ggttctgtaa cttctaccga aggttcatca agaactactc tagtatcgcc 2880 aaacctctta tcgacttgac aaagaaggac ttaccctttg tatgggaaga acctcaacga 2940 acatctttcg aagcactcaa aaagagtttc acctctgttg atctcctacg tcattacgat 3000 ccgaccaagc aactcatcct tgaaaccgac gcctccgact atgccatcgc aggtatctta 3060 tcacatgaaa tcgacaagaa actcgaacca gttgctttct tctctcacaa aatgttgcct 3120 gccgagttaa actatcctat tcacgacaaa gaaatgttag caattgtttc agcattcaaa 3180 gaatggcgac attacttcga aggtgctaga gaaaccattc gtgtctacac cgaccacaga 3240 agcctggagt actttatgac taccaagcaa ctcaatcgac gacaggcgcg atggtctgaa 3300 ttcctagccg actttgactt caatatcatc taccgaccag gcgtacaagg cacaaagcct 3360 gacgcactca cccgaagaca tgattatcat ccactcgaga aaggctccag ccttactact 3420 gctgccaatc ctcagaattt ccagactctc cttcgccctg gacagtactt gggtactgcc 3480 acaaccggac tcgatcggtt ggaaatatct tcgcccatca agtcattgtt gaaaaccggt 3540 ctagaaaccg atgaatcagc aaaaccattc ttggacaaag ccaaccatcc ctccgaagct 3600 cacccatata ctcgagacga tgaaggactc ctcagatatg gcgaatcatt ctatgtccca 3660 gccaataacg agctacgcac cctcgtcacg aaagaatgcc atgatgcact cactagtggg 3720 catcccggac gacgcaagac tatccaactc atccgacgcc attactggtg gccaggccta 3780 aaaggcttcg tcaatcacta cattgattcc tgcgatcttt gttgcagaac taagacaaga 3840 cgtcatcagc cctatggcga actcaagtct ctacccattc ccccatatcc ctggtcatct 3900 gtatcgatgg acctcattga acaacttccc ccatcacacg gctacaacac catccttgtg 3960 atcgtagacc gactcaccaa gatggctctc tttatcccca caacgactag cctcaacgcc 4020 gaggaactcg cccaattata tgtcacccac gtcttctcca agcatgggat tccgaccagt 4080 attgtatcag atcgtggatc tgaattcaca tcccgctttt ggcgagcatt cacacaactc 4140 ctacacatcg agttagaact cagtacagct tttcacccag aaacagatgg acaaaccgaa 4200 cgagtgaacc aggtcttaga acaatatctg cgcctttata ccgattataa gcaaaaggaa 4260 tgggcaccgc tactcccagt tgcggaattc acttacaaca atacgcccca ttcgtccact 4320 accatgtccc ccttctttgc caacaaaggg taccatccca gggcatcgtt tacccccgat 4380 gacaacgttc ctattttcag cccacctgcc agagcctcca tcaccgactt gagcaagctc 4440 cacgaacacc tcaagataga aatgtccaaa gcacaagaga gtgcagcact acagtttgat 4500 aagcaccgtg ccccacttcc cgaatatact atcggcgaca aagtctggct atctgcccgt 4560 aacatcaaaa cgaaacgacc caccaagaaa ttagatcacc gctatctcgg tccctacacc 4620 attatcgcgc gcgtttcttc ccacgcgtat cgccttgagt tgccgaaatc aatgcgtatc 4680 cacgacgtct tccacgtcca attgcttgag aaatatattg agaatgagat cccagggcga 4740 acacaagtcg caccatcacc tatcgaagtc gaaggtgacc tagaatacga agtcgagtgc 4800 atcctcgatc atcgatttta ccgaaaacgc cgccaattcc ttatcaagtg gctcggctac 4860 agtgccgaac acaacagttg ggaacccgaa accgctctag aaaatgcttc agagattgtt 4920 gatcagtata agtcaacaca ccgattatag gaaaccaagt tcatagtaac agttcagaga 4980 aattattcca aacattgcga aaacattttt agttcataga cttagttcat aaatttttca 5040 aagacaaatt cttcacaacc agttcataga aatttattcc atagctccag caaattttag 5100 ttacaagtac acaacagaac aagccgcaga cggcatgacg gagcgaccgt cttcgaaggg 5160 gggggtgact gtcacgagcc tgcacaaaga ag 5192 // ID Mariner-4_AN repbase; DNA; FNG; 1850 BP. XX AC . XX DT 09-JAN-2004 (Rel. 9, Created) DT 09-JAN-2004 (Rel. 9, Last updated, Version 1) XX DE DNA transposon. Mariner superfamily. Tc1 clade. XX KW DNA transposon; mariner superfamily; Mariner-4_AN; Tc1 clade; KW transposase. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-1850 RA Kapitonov V.V. and Jurka J.; RT "Mariner-4_AN, a family of nonautonomous DNA transposons in the RT Aspergillus nidulans genome."; RL Repbase Reports 3(12), 212-212 (2003). XX DR [1] (Consensus) XX CC DNA transposon. Mariner superfamily. Tc1 clade. CC The consensus sequence was built based on multiple alignment of CC several CC copies 99% identical the consensus. CC Mariner-4_AN elements are characterized by TA target site CC duplications CC and 36-bp TIRs. CC It encodes a 449-aa Mariner-4_ANp transposase (2 exons, pos. CC 277-1149, 1205-1681). This family is closely related to CC Mariner-4_AN. The consensus sequences are 68% identical to CC each other. XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="Mariner-4_ANp" FT /translation="MPAPHPNELRVQVLSYWALGIQPPDIAKMLQINVRTI FT RDMIQKGQDRGYNPAQCMRVKLEYVEDGKRSGRPKEISEATDMAVLASVKQ FT DRNGREKSSEILAFEAGISHSSVLQILHKHGFTIVKPSWKPGLTEAAKATR FT LRFCLDHQHWTLEDWKAVIFTDETSVILGHRRGSVRVWRTARDVHDPTCIR FT RRWKGSSDFLVWGCFTYDKKGPLHIFEPETAYQHKKSEVEIAALNAELEPI FT LREEWEIETRLKRLHLRGVPGRVPTWRFTEKTGKLVRKSKGGVDWWRYQQE FT ILLPHLIPFAKACKIERPDTKVLEDGAPAHKHHAQRRIYSIHEIEKIFDWP FT GNSPDLNAIEPCWMWMKKRTTSRGAPRDKKTGKTAWIKAWNELPQEKIQGW FT IERLIRHIQEVIQHDGGNEYKEGRTDHDARSWKGRRIKGQLSARQDLSPDP FT WEDL" XX SQ Sequence 1850 BP; 496 A; 414 C; 446 G; 494 T; 0 other; cggaggtgtg caccaaaagt catcgccgcg ctagtaattt atgatgccaa atcctgtaat 60 tccattacca gtcgcaagct gataggttga tgatatatcg atcttctaag caaacatcaa 120 cataacctct tctcattttt gaagctatcc agatcgcaaa ttgacagatc aaatcagttt 180 ttatggtgtt ttgaagcgct ttttctgcta tttttgcctc cctgcctcca attctgcctc 240 cgaactgtac acgccttcct gcctgcgatc cttacaatgc cagcgcctca tccaaacgag 300 cttcgagttc aagtcctctc ttactgggcc ttagggattc agccacccga tatagccaag 360 atgcttcaga tcaacgtccg tacaatacgg gatatgatcc agaagggcca agatcgtggc 420 tacaatcctg ctcagtgcat gagggttaag cttgaatatg tggaagatgg caagcgctct 480 ggccgtccga aggagatttc tgaagctaca gatatggcag ttcttgcatc tgtcaagcag 540 gataggaatg gacgtgagaa atcttctgaa atccttgcct ttgaagcagg tatatctcat 600 tcttctgttt tacaaatcct ccacaagcat ggctttacaa ttgttaaacc ttcttggaaa 660 cctggtctaa ctgaagctgc aaaggctact cgtcttaggt tctgcttgga tcaccaacac 720 tggactctgg aggactggaa ggctgttata tttaccgatg agacttctgt tatccttggc 780 caccgtcgag gctccgtacg agtttggagg actgctagag atgttcatga tccaacatgt 840 atccgaaggc gctggaaggg atcatctgac ttcttggttt ggggatgctt tacatatgat 900 aaaaagggac ctctgcatat ctttgaacca gagactgctt accaacacaa gaagtcagag 960 gtagagatag cagctctaaa tgcagagctg gagcctattc tcagggagga atgggagata 1020 gagacgaggc taaagcgtct gcatcttcgt ggggtccctg ggcgtgttcc tacatggaga 1080 tttactgaga aaactgggaa gcttgtacga aagagcaaag gaggagttga ctggtggaga 1140 taccagcagg tattctctaa tagctttatt ctcctatatt gggctaacca gcttttctca 1200 ataggaaatc cttcttccac atcttattcc ttttgccaag gcctgcaaaa tcgaacgtcc 1260 agatacaaag gtattagagg atggggcccc tgctcataaa caccatgctc agcgccgcat 1320 ttacagcatc catgaaattg agaagatctt tgactggcct ggcaattcgc ctgatcttaa 1380 tgcaattgag ccatgctgga tgtggatgaa gaagcgtaca acttcacgtg gagcacctag 1440 ggacaaaaag actggaaaga cagcttggat aaaggcatgg aatgagctcc ctcaggagaa 1500 gatacagggc tggattgaga ggcttataag gcatatccag gaggttatac aacatgatgg 1560 gggtaatgag tacaaggagg gccgtacaga tcatgatgct cgaagctgga agggcaggcg 1620 gatcaaaggt cagctttctg cgcgtcaaga tctatctcca gatccttggg aggacctctg 1680 aatagcttca tatctgctag ctttgacatt ttattgtatt ctccttctct aatatcacca 1740 cagctgtatg ccgaacattg gttgctatgg tattttctta caagaagccg gtacagtggc 1800 agtactagcg tcaatactag cgcggcgaag acttttggtg cacacctccg 1850 // ID TCA3_I repbase; DNA; FNG; 5508 BP. XX AC AF510498; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans Ty3/gypsy-type retrotransposon TCA3_I, internal DE region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; internal region; KW internal portion; Ty3/GYPSY superfamily; TCA3_I. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-5508 RA Goodwin J.T. and Poulter T.R.; RT "Direct submission."; RL Direct Submission to Genbank (08-MAY-2002). XX DR Genbank; AF510498; Positions 314 5821. XX SQ Sequence 5508 BP; 2131 A; 1048 C; 904 G; 1425 T; 0 other; gaaaattaat tttctgatta tactacttac tagatttcat aaagtcaata tctgattgat 60 acaacttggt tcattattca taaaacttaa caactaattc aacaagaaaa cccaacaaaa 120 aaaattcaaa taaaataatc aaaaaaatat tataattaat taaatacaaa aaaaaaatac 180 acacacatat acacacacac aaaatcttgt tgcaaaaaaa aaaaataata atattataat 240 aagaattaat caacaatagc aatgtcgtca ccacgcccac attcaccaag accatctggt 300 tcacgagaac aggaagatat cacactgatg atcaaagctt ttagagattc aatggaagct 360 aaacttgaat tgcactcgca gaagtttact gttttggaag caaatattcc aagaacggac 420 gaacggtttg atgaattatc acaaaggatc actgttcttg aaaataacca aaaggcattc 480 ttacccaaac aagagaaaga tatcggaaat attctccaca gacaaagaaa ggaagaaggt 540 gatgttaagg atatcaaaac agttgtcggt gaagaaaaag aagaattgca ccaggtcgaa 600 gatttcgttt taaaagatca agaagaatta cgaaacgtcg aaaagacagt gttgaaagaa 660 gaagaagatt tgcaaaaggt ggaacagtca atggaaaagg aaaaacaaga gttacaccag 720 gttgaagact ttattttgca aagagatgag acggtaaaga aacttgaaga agaaatcaat 780 aacatcagtc ggaaattgaa tgcccaacga gaaagtaatc aatctcaacg ggaaccatat 840 acaatggcaa cttcgggttc tgatccgaga tacagatctc aacaacctaa catcggaaat 900 accttggcgc aagatctagc attaattccg aatttagacc cagagatttg ccgattgata 960 aagggatacc ttccttttat catcttacat gagataaaca ttattggtgg cccgattggt 1020 aaaccaccaa cattcagacc ggatctagtg atccataatc caaaggatcc tgaaaagatc 1080 cagaagctca tgcgactcca gtcgtatatt cagctctctc ttgtaccata tcatctctac 1140 ccgatgatat tggaaccata cttacagggt agatacattg gttatatgga ggacgccaag 1200 aaaagtccag ccaatggaag agaatacagc tatgtagacg tcttgatcgc atttgtcaag 1260 gggtcgcaat tggaagtagc taacgcaaat gcacaggttg aattgttcaa aatattgcca 1320 gttccagggc agacagtcgg tgatttcatc gatgctatcc aaggaaaata taggcaattg 1380 aaacaatata ataatgtgtt cgtatcagtt cgagcacatg tattttcaca cctacacaaa 1440 tacttcccag aaaagatatt cgaggcggac tggttgtcca aaccagaatc aaaattttgg 1500 accgatttag acttaatggt tgggctggca gttttccagc caccagcgtc tttactgaat 1560 attgatgcta ttaatttcgt tccaccatct tacaacaaca accaacaatc gtatgaaagg 1620 aacaacaacc aacagtcatc atacaataga aatctgaatt acaacccgaa aacattctat 1680 ccaaggcctt tcgataaacc aagatttgat aaacctccat acggaaatgg tcagatctat 1740 tatcaaaata cttcaaactc ctctatcaaa tacaacccta ggggatactt ttaacaataa 1800 tcaacaaaaa ggcaaaccac cttatcgacc atttagaaga agaggatata tttggaataa 1860 gggtaaaaga tcacaaaaga tttatgaatt atcagtggac cctgaaacac agttaggaca 1920 aattgttaat gacgatgata ctatcgaatc acaactatac caagtcgatt taattgaaga 1980 agatgaaaat gataatcaat ttgaacaacc cgtacatgaa gaatctttag atgaacaaga 2040 agatgacgaa ttcgattttc agatcaatga tcttcaatta tatgaagtaa atgtcactga 2100 cgttgcatcc accgggaaaa acaaagcacc tagaatactt ttggatagtg gtgcagaagc 2160 aaatttcgtt ggtaaagaaa tccttccatg gttggaagag cacggtcttc tttttagtgt 2220 cacgaagtta cgaaagtttg caacagcaag aacggcatct aacttatctc acacaattga 2280 atttgttgct atagtcaaaa tctttggcgt attcttagaa ttttacatta tggatgagtt 2340 aaacaaaatt attattggtc gccctacttt acaaaattgg aattatcatc tcaataatga 2400 aggagagttc attctgatta acaaccaacg ataccacatt cattcacttg aattgaaaag 2460 cgaaaaatct ttggaacaaa tcagggaaaa attgaaaaag gaatttgcag tcaaatatcc 2520 aaaattattt gaaacaaaat tacgaccacc accaccaaga gactttcaat ataaaattca 2580 actcacagac cacactcaaa tttattcaaa accatataaa tgcaatcaag aagaacaagc 2640 tctcatcaag gatttcatca atgaaaaatt agaagcaggc gttttggtac cagctccaat 2700 tgatgcttgg ttacacccaa tatttcctat cagaaaaacc aatgccaacc aatcctccac 2760 caaaatagca gttgatttaa gacgtctcaa taaggtcaca gtacgaatgt acacttatcc 2820 aacagacaca aaagacctct tatcctcact aacagattcc cactatttta gcgctttaga 2880 cttaaagaat gcgttctatc aggtaagcat acacaaggat agtataaaat attttgggat 2940 ttcaacatcc gaggggaatt attgctttac aactttaccg tttggagcaa tcaattcccc 3000 aaccatcttt actaacttcg tgagacagat tttagagggg atcccatgta tatttatata 3060 catggatgat atcctcatcc atactaaaac cttacatgac cacatgtcat tactcaggag 3120 aatcatggag aaactaaatg agcatcagct tcaaatgaat tataacaaga tgcaattatt 3180 aacaacaaaa atcaatttct tagggtacag cattcaagcg aacaaaatat caccagatat 3240 ttccaaaatt caagcaatac aaaattggga attgcccacg accactactc aaatcagagc 3300 atttgtcaat ttcagcaacc actttcgcat cttcatccca gaaatagcaa aatttaccaa 3360 tccattaaat gaattattga agaacaacaa tggtaaaaac ataaagattg aacacaccca 3420 agcatccatt gatggttaca aggcattaaa agccgccatc attggattgc cgacgcttca 3480 actttacaat ccaaaactac caaccatcat tttcacagat gctagccaca tggtagtagg 3540 aggatattta tgtcaaccaa cctttagaaa tgacaaagaa gtccttgtcc caattgcatt 3600 ttcatcacat aaattaacag aaacacaaag cagatatgct gctatggaaa aggaactttt 3660 agcaattatt gtgatattgg aaaaatttag atatcactgc agcaatacgg tagagatcta 3720 tacagatcat caaagtttgg catcattttt agataagaaa actactccac caccaagaat 3780 tgctaggttt ttagacttaa ttggatcatt ttccccaaaa gtgtactatt taagtggaaa 3840 gaaaaatttc gttgctgata tcattacaag atatcaaact caaaatatta aggaattggt 3900 agatgaagac aagatattag gacagacttt tacagtcaag agaaattgga aacaacaatt 3960 attaccaaga ttggaagcaa ttgaattgga aaatcttaat gaatcacagg ttcacaaaat 4020 tcaaacttca ttagaacaac aacaacaaca tgatttggaa gacaatgacg aagagttatc 4080 tctccaactg tttaaattaa tgaatgatga gttatttgta atcattaaca atcaactttt 4140 aaaatacctt ccaagactgg aatacaatga tatttgtcaa acaatccatg acaaacacca 4200 cccatcaact agagtaacag actacttatg cacactcgca tattggcacc ctgatcatct 4260 attaattgct acaaacatta cgagaaagtg tcactattgt caactaaaca cgtcaattcg 4320 tgaggccatt agaccatacc gaccacttga accactcaag gcatttagca gatggggaat 4380 ggactactct ggaccatact ttaacacagt ccaacacagg tacatattag tagccgtgga 4440 atatgtcact ggtttaacta ttgcagtacc aacattgcac aaagacgcag ataacgcaat 4500 cagtctttta caatcaatca ttctgatcat gtcagcacct acagaattag ttacagatca 4560 aggtaaagaa ttttcatcac aagctttggc taccctatgt gaccggaata atatacaaca 4620 ccatattact tccgcccacc acccacgtgg gaatggtcgg gttgagaagg tgaaccacct 4680 attgaagaaa atattgaaag cattaactaa cgatacgatg caagattggg atttaaaact 4740 atatgacgct ttaagaatct acaatgctac acctacaatt tttaactaca ctccacttta 4800 tcttgcactt ggaattgaac cacaccataa tttaaatcaa ttacaaaaag atttaattga 4860 aaatttgcaa aaagaattgc ccccagaggt ccaatccaca gaagaacacg aagaaaaccc 4920 aaatgatgaa caacaagaag agggcagaga acaacaaatt tcaagagaag aacaacagga 4980 cggcagagat cttgtacact taagaattta cgaattggaa gcaattaaga aagctcgcaa 5040 gttacacaca aatttgaaaa cacgaagaaa cgcagtccaa aatatgttaa aggaaccata 5100 tggcattcca gcacctttta caaagggaca atgggtatac agaattagag ctaaagcacg 5160 aaaatatgaa tcaaattttg atggtccata tcaagttcaa gaagtattag gtaaaggtgc 5220 ttataaattg agagacatca ctggaagaga aaaaggaatc tacaatcagg atcaattgaa 5280 gttagcatat tcagcagaca acgatccaat acaggttttt agttctttta ataaagaata 5340 tgatcgagta caacaaaaat tgttagacaa aattcaatca gaaagagatc atcaattaaa 5400 ttgtttgtca gtccaacatt tacacagaca aagaaggtta ctcgatatat ccagctgtct 5460 tgagcaaatt ctgcaataat ttcgctaatc attggaggaa agggtaga 5508 // ID EGRT1 repbase; DNA; FNG; 687 BP. XX AC X86077; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 12-JAN-2011 (Rel. 2.02, Last updated, Version 3) XX DE E.graminis mRNA for a retroposon-type repetitive element. XX KW retroposon; Repetitive element; EGRT1. XX OS Blumeria graminis OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Leotiomycetes; Erysiphales; Erysiphaceae; Blumeria. XX RN [1] RP 1-687 RA Wei D.Y., Collinge B.D., Smedegaard-Petersen V. RA and Thordal-Christensen H.; RT "Characterization of the transcript of a new class of RT retroposon-type repetitive element cloned from the powdery mildew RT fungus, Erysiphe graminis."; RL Mol. Gen. Genet 250(4), 477-482 (1996). XX RN [2] RP 1-687 RA Thordal-Christensen H.; RT "EGRT1."; RL Direct Submission to Genbank (04-APR-1995)H. Thordal-Christensen, RL The Royal Veterinary & Agricultural Univ, Section for Plant RL Pathology, Dept of Plant Biology, Thorvaldsensvej 40, DK-1871 RL Frederiksberg Copenhagen, DENMARK. XX DR GenBank; X86077; Positions 1 687. XX CC This sequence is a putative master transcript of EgR1, a CC repetitive element from the fungus Erysiphe graminis f.sp. CC hordei. Sequence analysis of the cDNA revealed that the EgR1 is a CC member of the retroposon superfamily with properties in common CC with SINEs and LINEs. SINE-like properties include the transcript CC size (approximately 700 bp), and the lack of major open reading CC frames. In contrast, the fact that the transcript is CC polyadenylated and is most probably transcribed by RNA polymerase CC II, suggests a functional relationship to LINEs. A constitutively CC high transcript level is found throughout the asexual life cycle CC of the fungus. Small differences in band patterns of Southern CC blots were observed between two isolates of E. graminis f.sp. CC hordei, while the band patterns in an isolate of the very close CC relative E. graminis f.sp. tritici in general appear dissimilar. CC This may imply that the element is currently active. Recent CC dispersal is confirmed by the observation that an approximately CC 550 bp internal hinfI fragment is conserved in the majority of CC the copies in all three isolates. Approximately 50 copies are CC present in E. graminis f.sp. hordei. XX SQ Sequence 687 BP; 195 A; 170 C; 156 G; 166 T; 0 other; ctcaacacct gtcagtggtg tcccctacga acctccagct ctcactgtag agtctgcaga 60 gccaagattg agtaacaacc tcctcacttc gatgaggatt cccagtcgcc ttcgcgatct 120 gtatcgtctt catttctcat cacatccccc tatcaccatt atcatgaagc taaccacgat 180 cagatcagac gttagggtcg aagcccttct cgtcaccaac ccttgatcat ggaggaaaag 240 ccatccgatg agtttccgga gcgaacccag cacccgatac agagatggtg gattggatca 300 agatggcctc gaatgctaca aagaagggag atatagatga atatgcgcac ctcatgtggt 360 cccggtgtct aggcctcgcc tggctggggc tgcaggtttt ttgagacttt ttcccgcgca 420 cgcagtttcc attgctacca tttttatttt tttttgggta gaaggttccg tggaaaaggt 480 ggctgaattc cacgggtaaa tactgagctg aatggctatt catcatgggc aatatatcaa 540 tgatcttaca agtaacaaga gaggacagga gcactgtaca aggtgtggcc tgggccagag 600 aggagcccaa tgtgctagat agtcgaagac tcaagtagta caataaaaac ccacccactc 660 attactccaa aaaaaaaaaa aaaaaaa 687 // ID FTF1_FO repbase; DNA; FNG; 1251 BP. XX AC AF395082; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Fusarium oxysporum fused Fot1:Tfo1 transposable element FTF1_FO. XX KW hAT; DNA transposon; Transposable Element; KW target site duplications; hAT family; FTF1_FO. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-1251 RA Horman R.S., Garcia-Pedrajas M. and Bainbridge W.B.; RT "Direct submission."; RL Direct Submission to Genbank (25-JUN-2001). XX RN [2] RP 1-1251 RA Jimenez-Diaz M.R.; RT "Direct submission."; RL Direct Submission to Genbank (24-JAN-2002). XX RN [3] RP 1-1251 RA Jimenez-Gasco M.M.; RT "Direct submission."; RL Direct Submission to Genbank (24-JAN-2002). XX DR Genbank; AF395082; Positions 1 1251. XX CC Contains Fot1-like and Tfo1-like transposons separated by CC an 8 bp target site duplication in the choline kinase gene. XX SQ Sequence 1251 BP; 325 A; 313 C; 288 G; 325 T; 0 other; tcactacgac gcagggtgac attatggaag gggcggttgt taatggcaac gtacatcgtg 60 atcgatacag gggagcccta acgcagtacg agtcaaaccc cgaccgtaca tatacgtgga 120 ctcccattat ttattgtaat ctcggcgctc ggggtcgctt tgaaccccct gatcatattc 180 aaggccaaaa gtatccaaga acaatggttc aagaaggatt tcctagctaa gcatcctggc 240 tggcatgttc accttttcgg aaaacgggtg gacaagcaat gatattgctg tcgagtggct 300 agggaaggtg tttttacccc aaacgcaacc tgaggatcca gccatggtcg cctacttatc 360 gtcgacggtc acggcagtca tacctcggac gaatttatga ctatgtgtta cctaaacaac 420 gttcacttac tctttttccc tgctcatact tcccatgtcc tccagccctt ggatctcggc 480 tgcttttcca gtttaaaaac gcctatcgta ggttaattgg ggagcatacg gcttttgaca 540 gataccaaca aaggttggaa aggcaaactt tcctcgaatt ttatgcgaaa gctcgagaaa 600 ttggtcttcg aaaggaaaac ttcaatctgg gtggaaagcg agaggcaaca gaaggagagc 660 ctgaatatgt tagtgagccc cattgaagtg atcaggcgtt tgaatcttac catagaatcg 720 agaagagacc tgcttagcat tcacatccag aatgaagtat cctctgtagt aaccctcttg 780 ccactgaagc tcagggttct tctggactct ggcacgagca gccttgccgg ctgcaggctc 840 gatagggcta ccaacaccat tagagctgac agctgttcag tgtgtccatc aatcaagtta 900 cttggcttgg ttggttgtga ttggttgatt acgtaacaac caaccaaagt aagggctcct 960 gttcaaccaa gtaagcaacc tttttccatt actcggctct acttgattta ctcgacagaa 1020 ttgccgaatg aggcatagcg cgatgacttt gacatatcta cgcgctctga ttggctaggt 1080 attcctcatc ccacctgcga aaattctcgc cgagtttctt aagagaaggt acctgacgat 1140 tgcgccaagc tcgaagccaa atatgtctgc acattcattc tttcggccgc atagaaggac 1200 caggaagtcc actccaccta ggactccctc tgagcctctc gctttccacc c 1251 // ID SKIPPY repbase; DNA; FNG; 7846 BP. XX AC L34658; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Fusarium oxysporum retrotransposon Skippy; gag polyprotein, pol DE polyprotein; LTR. XX KW LTR Retrotransposon; Transposable Element; LTR; RNaseH; SKIPPY; KW gag; integrase; POL gene; retrotransposon; reverse transcriptase. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-7846 RA Anaya N. and Roncero I.M.; RT "Skippy, a retrotransposon from the fungal plant pathogen RT Fusarium oxysporum."; RL Mol. Gen. Genet 249(6), 637-647 (1995). XX DR GenBank; L34658; Positions 191 8036. XX CC LTR 1..429 CC CDS 484..3045 CC /gene="gag" CC /codon_start=1 CC CDS 2883..6770 CC /partial CC /gene="pol" CC /codon_start=1 CC /function="protease, reverse transcriptase,RNaseH, CC integrase" CC LTR 7418..7846 CC Target-siteduplications of 5 bp were found. CC The second ORF, 3888 bp in length, has homology to the protease, CC reverse transcriptase. RNase H and integrase domains of CC retroelement CC pol genes in that order. CC Sequence comparisons and the order of the predicted proteins from CC skippy CC indicate that the element is closely related to the Gypsy family CC of CC LTR-retrotransposons. XX SQ Sequence 7846 BP; 2806 A; 2057 C; 1539 G; 1444 T; 0 other; tgttacgacc ctagcggtta catcacgtgt acctcattat ttttctccaa tcacaggaac 60 ggacccacca cctcacattg gaccgacctt ccaatacttt cggtccaaag ataagataag 120 gaccgacgac tctcgttcaa cggtcctaca gaccgatgca taaacaatat cggtcctgag 180 gggaccgacg ccagcacact atcggtcctc acgaagacct ctagtatata tacactcctt 240 tagcagtaga tagaacttag ctcaccagct atcaataaaa cttctttaca ttgatcaagc 300 ctaacacgca ttgaatctac cattaagaga cgtgacactt cgacaagctc agcatcacgc 360 cctacgccat ctgccaacaa taaacctagc acggcttagt ttatccacag ttgggaacca 420 accgtcacac gttgatagct cttgttcaga ccgtaccgcg taacgctgag caatacaaac 480 gcaatgtctg cgaacgtcaa ccccgtccaa cagcagaacg cagctgccaa ccttcagggt 540 caccagcctg cagcacctgc taaccctgca ccggtcaatc gcccgccaac cgatcagaac 600 atggacgacg cagacgactc ttcccagagt tccgacgact cggaggtcga acgacttcgc 660 gagcagctcg ggaacgtcac caatgagatg aacgaaatgc gacagatgct ggaagaattc 720 accgctctgc agcaccagca gaatcagagc aacaacaaca cccagcagga gatgtacaac 780 ctggcctcgg cagccaacaa tgggagagac ccaggagaag tcctcaagcc tagcccgcct 840 gagtacttcg acggaacccc gagcaagcta cccacgttcc ttactcaaag ccgagccttc 900 atcacgtact atccgaatca gtttcgcaac gattccgcca aagtaatgta catggcagga 960 agactcatca aaactgcagc ccaatggttt caacccatca tgaatgacta catgacaaac 1020 ccaccttaca aactacaacc acgaaccgct ttactcttcg gagaaaacgg acgtcacgag 1080 atggaagaag cactcaaaat ggcgttcgga accattgacg aaaaaggcca agcagaaagg 1140 aaaatcaaaa cacttaagca aaccggatca gcatctaccc taggagttga gtttttgcaa 1200 ctcgcaagca agctaccctg ggaccaagac gtattgatgt catttttctt cgacgcactc 1260 aaagaacaag tccaacaaga attatgggag aaagatcgac ccaggacatt ggtcgaatac 1320 atcaatatgg cagtcaaaat cgatgaccga caattcgcat ggagaactcg taactcacga 1380 ggaaacaagg gacgacaaga caataaacct agataccatg ccaaccaagg gagaactcga 1440 caaactgaca cgtcctacgg caccgaagca ggaccaatgg ctataggaat gactaaacga 1500 gacaagtcca aagtcacttg ctacaactgt ggcaagaaag gacactacga acgagaatgt 1560 aagaaccccg tcaaaactaa ccaaaaatac agacctgttc cagaaggtaa gaaaatcaac 1620 atggtcaaga aaaacgaaga acctcagatg gcaatcaaaa ccatcaacat gactcgaaaa 1680 gacggatacg atatgacaca agcaaagtac atcaacaact tcgatccaac cctcgatgta 1740 cacgacccgt tccttagcaa agaagaaacc ctcgaaaaat actattccaa actggaacca 1800 gaacaacgac ctgttctagg acatacggcc ccaaccacag aagttctcta ttcacgaagc 1860 aaggaagaaa aaagagagaa aagaaacaac cgcgaacaga agaaacggca acaggccaaa 1920 aaagacaaaa caattgagtt agaatgggta ccagtacccg agcacaacca acaacccacc 1980 aaaggaaaat ccatttttat ggtcagaaag ggaaaggaaa ttgcccctaa aacggacaat 2040 gaacctagta ccaaggaggt caaccaggaa atcgacaaca ttcctgtcaa agtcacctca 2100 cgacgaccaa accgacatac caatgatccc aattacttgg aatcctgcag agttcaaagg 2160 gagtccgacg ccaggaaact caggaataag aacgagaaaa caatctggaa cacccctatc 2220 gtaccacaat acgatgaatt caaccaacgt ttctggacca acaaacacca gaaatatacg 2280 gaactcgcca gggaacgagc catcacggaa caagatgacg acatctacat ccgagcgtac 2340 acaaaagaaa tgttggaaga ccctacaact ccagaagaac gtatgcaagc ggaaaaggac 2400 ctaaggaggt accctaatca cccgaaccac aagcagatat catgggtatc atgcacacga 2460 cactactgct cgagacacca gcaagataag atagcaaacg attgcttccc agtacaagtt 2520 ccggaacatc aagaacagaa accctacctg ataatcgaca cagttgggta ccgagttaca 2580 aagaaataca ggggatctca agtagcaaaa ctagaagctc acacagaaac acgagaacga 2640 gctctagcac atattcaaaa ttctagacac gtctctcagt ggagacaacg ggtacagcag 2700 gaagtcgaga tcgccgaaga cgaaacactc gaccaagaac tcagtcaaat caatcaggac 2760 atcacccgat gggaaggaga actatcccaa gatgaacaag atatccttcg acagctagac 2820 aagcaacagt tgcaagaacg attgatacaa actgaagaag aaaaaggaag acccctcact 2880 gaaggagaaa aagcagacat catcctagac cacgaggtag gaaagatgga agctgcttat 2940 caacaaaaat tagccaccca gaacgaatgt cccgacgaca tcaactgcac caagagcgaa 3000 tgcagcatgg atcacccatg gggaaaaggc acgcgccatc tgtaacggag cgacagatag 3060 gcgagaaatc agaggctaaa ctacctaaga aagctctgag aatggcaacg aaaggacgcc 3120 aacgaacctg cctagaacta aaagtcagaa tcaagggcaa gtggctaagt gcacttgtag 3180 atagcggagc cgacatgaac ttcatttccc ctacaacggt taatgaacta aggctaccat 3240 ggaaggacaa gaacgaccca tatacagtac atgacggaca aggagaaacc tatctttacg 3300 aaaacggaaa tatcaccaga gagattgatc acctcaaggt attcgttaac ggaaaaaacc 3360 aaggtatcga cttcgacatc atcccagtat ggagatacga tctagtactc ggatacccat 3420 ggctattacg ctacaaccca caattcaact ggagaactgg ccaggtggac tgcgaagacc 3480 acccttcaga tgatgaaagc gattcaggct acgacacgag atctcgaact tcgactgaag 3540 agagcagcga agacaggagc ggcaaagtac cgcccattcc aaaaggaaca cgacacaagt 3600 accacaaagg caaggttaaa tgcatcagac gaacgatagc atctctcaaa ggacagttca 3660 aacaactgga ccaagacatc aagcaaatga aacagattgc cgcgaaggaa tctgacgaac 3720 gactcaagaa cataccaccg gagtatcgta tctatgagaa attgtttcaa gaggaactag 3780 acacaaagtt accccaacac acggactacg atattgaaat cgtactaaag gatggaaaga 3840 acccgaaatt cttccccatc tataatctat ctcaagatga gctaggaacg ctcagagaat 3900 ggataaacga catgatacgg aaaggataca ttagaccatc aaaatcctca gcaggattcc 3960 cggtcatgtt cgtaccaaaa cccaattcga acaaactacg acttgtagtg gattaccgac 4020 aacttaacga aatcacggaa aaggacagaa catcgttacc actcatcacc gaactcaagg 4080 accgtctatt cggcaaaaaa tggtttaccg ccctcgatct caaatctgct tacaatctca 4140 ttcgaatcaa agaagccgac gaatggaaaa cagcctttcg aacgaaatac ggactattcg 4200 aatacttggt tatgcctttt ggattaacca acgcacccgc agtattccaa cgcatgatca 4260 cgaacgtact tcgagaatac cttgacatct ttgtagtctg ctacctagac gatatcctca 4320 tcttctctga cacagaagaa gagcacacag aacacgtcca caaggttttg aaagcactgc 4380 aagacgccaa catgctcgtc gaacccacca aaagtcactt tcatcagtct caagtaacgt 4440 acttaggaca tgaaatctcg cacaacgaaa tcaggatgga cagacgaaag atagcagcag 4500 tcgctgaatg gaaagtccca acatcggtaa aagaaaccca atccttctta ggattcgcca 4560 actactaccg acgattcatc aaagacttca gtaaaaccgc tatcccactc acggaaatca 4620 ccaaaaagga taaacaattc caatggaacg acaaggcaca agaagctttc gagaagctta 4680 aatcagccat cacaagcgaa cccgtccttg ttatgtttga ccccgaccgg caagttgaac 4740 tcgagaccga tgcttccgac ttcgccttgg gaggacaaat aggacaacga gacgacaacg 4800 gtgtactaca ccctattgct ttctactctc ataagatgca cggagcagaa ctcaactacc 4860 ccatctatga caaagaattc ctagctatcg tcaactgctt taaggaattc aggcactacc 4920 tcagaggaag caaacaccca gtgaaagtgt tcaccgatca caaaaacata gcttactttg 4980 caacgacgca agagctaaac cgacgacaat tacgctacgc cgaataccta tgtgaattcg 5040 acttcaccat agcgcactgt aaaggaacag acaatggacg cgcagacgcc attagtcgac 5100 gaccagactt tgacactgga actgtcaaga ccaaggaaca actcttggaa accaactcta 5160 agggagaata tcagttcaca caacctgtca aaaccatcgc cttaacccgc aaaggaataa 5220 cagaagaaga gaaacaacgc tacatcggat tcaagaagta catctcgatg caacaactaa 5280 aagaacacca tcgagacatg cacgagaaac ccgaagaagc cagcgcaagc catctttctt 5340 ggtatttcgg atcaggaaga gatgaacgaa tcagacaaat catggacaaa tgcccaacct 5400 gcaaacaaaa accacaggga tggagatacc cgatacaatc cctcacagac caagatgaac 5460 aagaaagagt ggaacaagaa tttatctacg aaatccacgc acatccatta catggacacc 5520 aaggagtcac gaaaacaatg aaacgacttc aagaactagg ctaccgccat ttcaaaaagg 5580 gacaagttga aaaagtcata aaacaatgcg atttgtgtgc aaaaacaaag gcgcaaagac 5640 acaaacccta tggacaacta cagcccttac cagtagcaca acgaccttgg gactcgatca 5700 caatggactt cataaccaaa ctacctttgt cagaagaacc ctcaaccgga atcttctatg 5760 acagtatcat ggttattgtt gaccgactca caaagttctc ttactaccta ccctacagag 5820 aagcaacaga cgcagaagaa ctttcttatg ttttttacag acacattgtt agcatacacg 5880 ggttacctac ggaaatcctt tcggatagag gacctacgtt tgcagcaaca ttttggcaat 5940 cacttatggc acgacttgga ctgaaccacc gactcacgac agcgtttcga ccgcaagtcg 6000 atggacaaac cgaacgaatg aaccaagtac ttgaacagta cttacggtgt tacatcaact 6060 acgaacagaa cgattgggtt gagaaactac caatagccca actagcctac aacaccgcct 6120 acaacgaaag tacgaagctt acaccagcct acgcaaattt cggtttcaca ccaaacgcat 6180 accacaatgc acgaccagag aagtcaatca atccagccgc cattatcaaa agcgaagaca 6240 tgcaggatct acatgaatat ctgaagacag aactcgaatt tgttagaaaa cgcatgaaaa 6300 attactatga cccaaaacgg ttgaagggac caaccttttc ggagggagac atggtctacc 6360 tagccacaaa aaacatcaaa acagaccgac caagtcacaa attggactac aaattcatcg 6420 gaccttacaa ggtactacaa aaaatctcag aaaacaacta caaactggac ctaccaccga 6480 aagttaggct ccatccgatc tttcacgttt cattactcga atcagcagcg gacacaatac 6540 aagtcaaaac aggcaacgaa ccacgagaaa tctcaggacc agaagtctat gaagcagagg 6600 ctatcaggga cacccgcaaa ataaacggtc aaagagaata cttgataaaa tggaaaaact 6660 acccagaaaa tgaaaataca tgggaaccac caaaacacct cgttaatgcc cagcgacttc 6720 tgaaggattt tcatcaacgg gctcgaaaaa aggaacgtcg cccaaaatag aattccaatc 6780 gatcatgtcc acggcaccca gggactgagc attagaaatc accacggact cgtcctggag 6840 ctcaccagac tcctcctggg attgcatccc acgagcaaac aactcatcac ccttcttctt 6900 caacaaacgc ttctgactgc gaatacgagc caatttcgcc atagcagctt caagagcctt 6960 ttcagcttgc tcttcctcct tctccaactt aacgcgagct ttcatgttct tttccactat 7020 tcgaagaaaa gaacgtcaga acaacatcag aaacagaaaa caaaaaaaaa aaaaaacgga 7080 acatacagta ggaagcaaca cccgaaccat cgcacaccac cttggcctca gtacaattct 7140 ggcaccgatg agattgatcg cctttgacct gacaagaaag gcccttgcgg aaacaacggg 7200 aacacggcat gatctcgtca ccaaacctga caatgtactc agaaagtttg acggcctcta 7260 acgttttcgg atgaggtttg cttttggaaa cacgacctga cattttgtca gcattgaaaa 7320 taaaaaaaca agactaggtt tgactcacga ccaacggatg gaagaaacga cggttatgca 7380 ggtcttgagg acaagaccca acggagggga gagatcgtgt tacgacccta gcggttacat 7440 cacgtgtacc tcattatttt tctccaatca caggaacgga cccaccacct cacattggac 7500 cgaccttcca atactttcgg tccaaagata agataaggac cgacgactct cgttcaacgg 7560 tcctacagac cgatgcataa acaatatcgg tcctgagggg accgacgcca gcacactatc 7620 ggtcctcacg aagacctcta gtatatatac actcctttag cagtagatag aacttagctc 7680 accagctatc aataaaactt ctttacattg atcaagccta acacgcattg aatctaccat 7740 taagagacgt gacacttcga caagctcagc atcacgccct acgccatctg ccaacaataa 7800 acctagcacg gcttagttta tccacagttg ggaaccaacc gtcaca 7846 // ID L1-1_CA repbase; DNA; FNG; 5706 BP. XX AC AF254443; XX DT 28-JUN-2005 (Rel. 10.06, Created) DT 28-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE Candida albicans non-LTR retrotransposon Zorro 3. XX KW L1; Non-LTR Retrotransposon; Transposable Element; Zorro3; Zorro; KW L1-1_CA. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-5706 RA Goodwin T.J., Ormandy J.E. and Poulter R.T.; RT "L1-like non-LTR retrotransposons in the yeast Candida RT albicans."; RL Curr Genet 39(2), 83-91 (2001). XX DR Genbank; AF254443; Positions 1 5706. XX FH Key Location/Qualifiers FT CDS 3..1829 FT /product="L1-1_CA_1p" FT /note="unknown" FT /translation="IMTTNGTNGFDFADKGDHPPRQSQENPPGNFQELPLD FT GGQIRKSSSNDGVSNNVEFNTNTNAHESWADYPESDQMDTDSSEYYTEDEN FT EEGKIPKGPYHQFQNANKFTYFTPETATTLVAPNNNTQNTTTEQDNMSKTY FT ASVAATFKTNLAKSQDKQEELRMSNFKVPQKAFDDLKRHNDAVFPEEVMTS FT DLSTIINKYGHEKVFDTIENTLITTAQNLEGYLSEYPENVMRKAFKYFTLK FT LSIEDKQTRDVCEEILGIREELMYIQRILDFNIMDKVMCFMPFTFEQMEGK FT LSSEKAKVRTIVENLELDFDGTVEHIKIDSAKRNRQLVAFKVPIHCRSLAE FT RYFRQIFLHKEDVIVQQYAPIIEKVQLGRKGKTEENNHQLLTEYVCYFIVD FT LFSGQVPKRRIKIDNTKNKPSSYEQCTSRVLSNCKYCEYCRSMTHTKYHCP FT LIKPCTNCGVKGHKTTSCKKALSTNTLVLKRPETKPNFPILPPKVVNKTTS FT DDSQRKGSIAKTTSHTKGDNTEKMVTPSAQNENTTLQESIPVTITGHREAP FT TTPPVADTTAKKTMTTGVLEMDTSKHTISSNDEASPRKKLNVKEKPSNPEK FT DPGLNLPPNLQ" FT CDS 2007..5453 FT /product="L1-1_CA_2p" FT /note="endonuclease and reverse transcriptase FT domains" FT /translation="MKRNESYINSLTIGSKNIGSHQSTDFKKLLDIFLKLI FT GEHLMIDIWFIQEIRFVSQEQFNYINKILKQHNAQLRMHHFEDLTGFLIHS FT PHAKLKFKIRDNDNHHTTHFEGRISILDITLITNEDITLINNYLHSGNMDA FT QMTLLKAFIKYIANLKKHTNHNIIYGGDYNHIMLLDDVQLPLDQTRYIISK FT KELEIIQLMSNFYKKWKLQDAFQIRNNLQPTNFHSNKSVKKRLDRIYIDSR FT IRRKLRNCRILEEFKQISTHKIIAMSFQIQKEPILKVGNPRYLIPQWMSQD FT ENIIKDLNNNEQSSLTPFSNWNGIINRIKEKVIFYEKYQRYIRAYIPHAGN FT FPDEKMLKFRFRPSFNFSIITEMQTESGNTVQDTEIMINLATKFYQDLFLV FT EDRHLESFTFVEQFDKKIDDTDKVLLEKAFIEENVYDHLLMINKKTAVGTD FT GISYQNLIELWPSLGESLIRAGNNILKYGTLPQQMSEVIITLIPKKLKTPI FT IENFRPISVISCAVRLLSSVIEKQLNPVLAKVIEKTQTGFLKERSISNSIY FT LLDMVLTRYQTSKTADAESAGFINLDFRKAFDSVHHDFILKVLQQVGFGPK FT ATNFLMAITAKQKAKVSINNIEGPCFPLKRGVRQGNPISPLIFILILETFL FT ARLSKEIEGIGVVNEVSLVAYTAYADDVIIFFKNKNDQERIQQLLEDFGRE FT SGLYLNNNKTEVCYFNDIPEISFLPYVSKKLQLEKLTYLGVPMKKADEEFD FT PWTLFVLNLNAQIRMTPILDLPYQLIMKLMNIFIFSKLYYRDLHSPILTTA FT VSSIITTVQQRLPLYFKLQRLQTPNHLGGFGLMNPNHQVKGRRGKQIYLLY FT TQEDDLIIKFMRTKIQDILDNIAKDYYTMPTEPDKLIVYPWYLFGMGVSCH FT LSLQFRYLKERVYENLTKLEISWFEAWFQLVHYTGPPVETPIIIMLIEDYA FT NLIIQPQTESIKLMSPNFEEQSLSEQTFHHTSRKLCPQAPIIPEGWGKHFD FT TIKSLTISDWTEFWKNMNKVQKQSVGSLQDYHLFILGYYSHYPFYPNYKKL FT EIHFCQLCNTGTDSIVHHIFECGETMELWLRHFNSQRTPQFIIGNKHLHKR FT DLYALNEYIKEVVQKVKRRRGSPILNQGERENVDAGTNVLV" XX SQ Sequence 5706 BP; 2130 A; 1002 C; 961 G; 1613 T; 0 other; ttattatgac tacgaacggt actaatggtt ttgattttgc tgataaaggt gatcatccgc 60 ctcggcagtc tcaagagaat ccccctggga attttcaaga gctgccgtta gatggtggtc 120 aaattcggaa atcatcgtcg aacgatggtg tttccaacaa cgtcgaattc aatacaaata 180 caaatgcgca cgagtcgtgg gctgactacc ctgaatcaga ccagatggat actgattcat 240 ctgaatacta tacagaagat gaaaacgaag aaggaaagat ccccaaaggt ccataccatc 300 aatttcaaaa tgctaataaa tttacttact ttacaccaga aactgcaaca acattagttg 360 ctcctaacaa caatacacaa aacactacaa ctgaacaaga caatatgtcc aaaacttatg 420 cctctgtggc agctacattc aaaacaaact tggccaagag ccaagataaa caagaggaac 480 ttagaatgtc caattttaag gtccctcaaa aagcctttga cgacttaaaa agacacaatg 540 atgcggtatt tcctgaagag gtcatgacat ctgatctctc aaccattatt aacaaatatg 600 gacatgaaaa ggttttcgac accattgaga acacgctaat tactactgcg caaaacttag 660 aaggatattt gagtgaatat cctgagaatg ttatgagaaa ggcattcaaa tatttcacat 720 tgaaactctc tattgaggat aaacaaacaa gagacgtctg tgaagaaata ttagggataa 780 gagaggaatt gatgtacatc caacgaattt tagattttaa tataatggac aaagtaatgt 840 gcttcatgcc atttacgttt gaacaaatgg aaggtaaact ttcatcagaa aaggcgaaag 900 taagaaccat agtggaaaat ctcgaattgg atttcgatgg tacagtggaa catatcaaaa 960 ttgatagtgc caaacgaaac agacaattgg tggcctttaa agtgccaata cactgtcgta 1020 gtttagcaga aaggtatttc cgacaaatat ttttacataa agaagatgtt atagtacaac 1080 aatatgcgcc tattattgag aaggttcagc ttgggagaaa gggcaaaact gaagaaaata 1140 accatcaact tttaacagaa tatgtttgtt atttcatagt tgatctcttt tcgggacaag 1200 ttccaaaaag aagaatcaaa atcgataata caaagaataa gccctcctca tatgaacaat 1260 gtacatcaag agttttatct aattgcaaat actgtgaata ctgcagatct atgacccata 1320 ctaaatatca ttgtcctttg ataaaaccat gcaccaactg tggtgtaaaa ggacataaga 1380 caacgagctg taaaaaagct ctgtctacca acactctggt tctaaaaaga ccagaaacca 1440 aaccaaactt cccaatttta ccacctaagg tggttaacaa aactacgagt gatgattctc 1500 aaagaaaggg aagtatagca aaaactactt ctcatacaaa aggagataat acagaaaaga 1560 tggttacacc atctgctcaa aatgaaaata ctaccttaca ggaatcaata cctgtgacaa 1620 ttacgggtca cagggaagct ccaacaacac ctcctgtggc tgatacaaca gccaaaaaaa 1680 caatgactac tggcgtcctg gaaatggata ccagtaaaca cacaatatcc tcaaacgacg 1740 aagcgtcacc gaggaaaaaa ttaaatgtga aggaaaagcc cagcaatcct gagaaggatc 1800 cagggctaaa cctgccaccg aacctccagt aggatgagaa ctcctacatg tttgcttttc 1860 cttgttaaag attgattttc ccgttattta taatactaaa acaaaaactg ataaaaacac 1920 tagaaaaaaa aaaaaaaaaa aaaagagaaa gacaacaaat tcatattcat acatacatac 1980 ttacacccat tatttaatta ctgtgaatga agagaaatga atcctatatt aacagtttaa 2040 caataggctc caaaaacatt ggcagccatc aatccactga tttcaagaaa ttacttgata 2100 tattccttaa actaataggt gaacacctga tgattgacat ttggtttatc caagaaatca 2160 gatttgtatc tcaggaacaa tttaattata tcaacaaaat attaaaacaa cacaatgcac 2220 agcttagaat gcatcatttt gaagatctaa cgggttttct tattcattcg ccacatgcta 2280 aactaaaatt taaaataaga gacaatgaca atcatcacac aacacatttt gaaggtcgta 2340 ttagcatctt ggatattacg ttaattacaa atgaagacat aactttgatt aataactatt 2400 tacatagtgg aaatatggat gcacagatga ctctactaaa agcattcatt aaatatattg 2460 caaacttgaa aaaacacacc aaccataata taatttatgg tggtgattat aatcacatta 2520 tgctgctaga tgatgtacaa ctaccactgg accaaactcg ttatattatc tccaaaaaag 2580 agctggaaat tattcagcta atgtcaaatt tttataaaaa atggaaactt caagatgctt 2640 tccagatacg caacaacctt caacccacaa attttcattc taacaaatct gtaaagaaaa 2700 ggttagatag aatatatatt gactccagga ttagaagaaa acttcgaaac tgccgaattc 2760 tagaagagtt taagcaaatc tcgactcaca aaattattgc gatgtccttc caaattcaaa 2820 aagaacctat cctaaaggtt ggtaacccac gttacctgat acctcaatgg atgagtcaag 2880 atgaaaatat aattaaagat ctaaataaca atgaacaaag tagtctcact cctttttcta 2940 attggaatgg aattattaac cggataaaag aaaaggtgat attttatgaa aaataccaac 3000 gatatatcag agcatacatt ccacatgccg gaaattttcc tgatgaaaag atgcttaaat 3060 tcagatttag gccctcgttt aacttttcca ttattacaga aatgcagact gaatctggta 3120 atacagttca agacacagaa ataatgataa atttagcgac aaaattctac caagatttgt 3180 tcttggtaga agataggcat ttggaatcat ttacctttgt ggaacagttt gacaaaaaga 3240 tagacgatac tgataaagtt ttgttggaaa aagctttcat tgaagaaaat gtatatgacc 3300 atttactaat gatcaataag aaaactgcag tgggaactga tggcatttct taccaaaatc 3360 tcattgaatt atggcccagt ttaggtgaaa gcctcataag agcaggaaat aatattttga 3420 aatatggaac tttgccacaa caaatgagtg aagtgattat tacattaata cccaagaaac 3480 tgaagacacc tataattgaa aactttcgac ctatcagtgt tatcagctgt gccgtacgat 3540 tgttatcatc agtaatagaa aaacaactaa atccagtctt ggcaaaggtt attgagaaaa 3600 ctcaaacagg cttccttaaa gaaagatcca ttagtaatag catatacctc ctcgatatgg 3660 ttcttacaag atatcagact tctaaaactg cagatgcaga atcagcaggg tttattaatc 3720 ttgacttcag aaaagctttt gattcagtac atcatgattt tatattgaaa gttttacaac 3780 aagtaggatt cgggcctaag gcgacgaatt tcttgatggc aataactgca aagcaaaaag 3840 caaaagtcag tattaataat attgaaggcc catgcttccc acttaaacgt ggggttagac 3900 aaggcaatcc tatttcacct ttaatcttta ttttaatctt agagaccttt ctcgctagat 3960 tgagtaagga aattgaggga ataggagtgg tgaatgaagt ttcgctggtt gcatacactg 4020 catatgcaga tgatgtgatc atctttttca agaacaagaa tgatcaagaa agaattcaac 4080 aacttttaga agactttgga agggaatcag gcctttatct taacaataat aaaacagagg 4140 tttgttattt caatgacatt ccggagattt cctttttacc atatgtttca aagaagctac 4200 aattagaaaa attaacatat ctaggagtac cgatgaaaaa agcagatgaa gagttcgatc 4260 cttggacact gtttgttcta aacctcaacg ctcaaattcg aatgacaccg atactggatc 4320 ttccatatca gttgattatg aaattgatga atatctttat attttctaaa ttatactata 4380 gagatttaca ttcaccgatt ctgacgacag cagtgtcgag tattataaca acagttcaac 4440 aaagacttcc attatacttc aagcttcaga gattgcaaac ccctaaccat ttgggtggtt 4500 tcggtttgat gaaccccaat catcaagtaa aaggtcgaag aggtaaacag atatatcttt 4560 tatacacaca agaagatgac ttgataatta aatttatgag aactaaaatt caagatattc 4620 ttgataatat tgcaaaggat tattatacaa tgccaacgga accagataaa ttgatagttt 4680 atccatggta tctttttggg atgggtgtat cctgtcatct gtctctacaa tttagatact 4740 tgaaagaacg agtatatgag aatcttacaa agctggaaat ctcgtggttt gaagcttggt 4800 ttcaattggt ccactacaca ggccctcctg tggaaactcc aattataatc atgctgatag 4860 aagactatgc aaatttaatt atacaacctc aaacggaaag cattaaatta atgtctccga 4920 attttgaaga acaatcttta tctgagcaaa cttttcatca cacttcaagg aaattatgtc 4980 ctcaagctcc gattattcca gaaggttggg gcaaacattt tgatacaatt aaaagtctaa 5040 ccatttcaga ttggactgaa ttttggaaga atatgaacaa agtccaaaaa cagagcgttg 5100 gatctttaca agattatcat ctttttatcc ttggttatta ttcacattat cctttttatc 5160 ctaattataa aaaactggag atacactttt gccaattgtg taatacgggt actgattcga 5220 tagtacatca tatttttgaa tgtggtgaga ctatggaatt atggctgaga cattttaata 5280 gtcagagaac tccacaattt attattggaa acaaacatct acataagaga gatttatatg 5340 ccttaaacga gtacatcaag gaagtggttc aaaaggtgaa acgacgaaga ggttcaccaa 5400 ttttgaatca gggagaaagg gaaaatgtgg acgctggaac aaatgtactc gtttagacat 5460 aacaacaaca ctgcttaatt ttataggaag attgcttata caatgcctcc aagcgttgtc 5520 aataataaac cacacaccac atatcataca cgatggtttt taagatattc tcactgagta 5580 tttctttcca tgaaaatggc ctcaaaaggt tttccatctt gaacttatta aaataaatga 5640 ttgtaacccc ctcgtatgtt tatagttata tacctgtata taaggactaa atatatgttg 5700 agaaag 5706 // ID FLIPPER repbase; DNA; FNG; 1836 BP. XX AC U74294; XX DT 23-APR-1999 (Rel. 4.03, Created) DT 23-APR-1999 (Rel. 4.03, Last updated, Version 1) XX DE Flipper, pogo-like autonomous DNA transposon. XX KW Mariner/Tc1; DNA transposon; Transposable Element; transposase; KW pogo superfamily; FLIPPER. XX OS Botryotinia fuckeliana OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia. XX RN [1] RP 1-1836 RA Levis C., Fortini D. and Brygoo Y.; RT "Flipper, a mobile Fot1-like transposable element in Botrytis RT cinerea."; RL Mol. Gen. Genet 254(6), 674-680 (1997). XX RN [2] RP 1-1836 RA Levis C., Fortini D. and Brygoo Y.; RT "FLIPPER."; RL Direct Submission to Genbank (15-OCT-1996)Phytopathologie, INRA, RL route de St Cyr, Versailles 78026, France. XX DR GenBank; U74294; Positions 1 1836. XX CC Flipper is a pogo-like DNA transposon. It has 48 bp-long TIRs and CC is flanked by TA target-site duplicates. Flipper's ORF of 533 CC amino acids encode transposase. XX SQ Sequence 1836 BP; 620 A; 353 C; 361 G; 502 T; 0 other; agttgagtac cccactttcg gaccacccct cttttggacc acctaaaatc ttaccccatt 60 ttaagcacta cctcacaact tcatctttaa taaatcaaca accacatatt caattgatat 120 aagattttaa tacattatca attaagctat gacaaagcct tatactgaag atgatatcgc 180 tgcagcactt tttgcgattg caggaggcat gtctatgcgt aaggcttgct cagaatatgg 240 tattccccgc accactttac acaaccgtat gaatggccac ctttcacata aaaaaggtgc 300 acaaaaccta cagaagatag ctcctgtgca ggagagagct ctagcaaatt ggattttagt 360 acaggaagcc ctaggaacta gccctaccca tcgtcaaata cgagaattag gagagtccat 420 tctcaacctc gaaggaggtg atttatctct gggcaagcga tggatacata gttttttgga 480 aagaaaccca gagattaaga ctaaaaggca atataaaatc gataatgccc gtatcaatgg 540 tgcaactacc gaaattataa gcaagttctt tgaaaagttg gatttaccag caattaagca 600 tatcaagccc gaaaacagat ggaatatgga tgaagctggt ataatagaag gccagggtct 660 caatggtatg gtacttggga gttcaaagcg acgttttatt cagaaaaagc aacccggttc 720 aagaacgtgg acctctttta ttgagtgtat ctcagctacg ggaagagcac ttttaccttt 780 ggttatattc aaaggtaaaa cacttcaaca acaatggttt cccattaaac ttgataacta 840 tgaagggtgg gagttcactg ctacagataa tgggtggact acggattcta caggtttgga 900 atggctaaaa gaggtgttta taccacaatc agcaccaact cgaccgaaag aagcaagact 960 ccttgttttg gatgggcatg gaagccatga aaccactcaa tttatgcttg aatgcttcaa 1020 gaataatata cacctcttat ttttaccacc ccatacatcg catgtactac aacctcctga 1080 tttatcaata ttttcacctc tgaaaaaaga atatcgatac cacctcaata ctctcgattc 1140 attggcggat tctactccca ttgacaaaag aaactttctt gcctgctatc agaaagctag 1200 attaaaagct ttaacacttc gaaatatcac ttctgggtgg aaggcttcag gtttatggcc 1260 tcaaaaccgc gctaaacctc ttttgtccag attattgctc gaaaacagta atcaagaggt 1320 tgtatatcaa aatcctgttt cagatgatga tcccgagctt caatggaata tacattcatc 1380 ttttattgca tggaaaaccc ctcaaaaagg aagtgatatt cgaaaatatg ctgatataat 1440 ggagaaagtt gatgagaccg atattccaac tcgccggctg ctttttcgaa agattcaaaa 1500 aggacctgat gctaaggact atgaacttgt acagtccaag aaacgaataa agcaattgga 1560 gcaaaaatta gaagagatta tacctaaaaa aagaaggatg gtaaaaacta gtccaaattc 1620 gaggtttgca gggatagaag ctatatatca agctcaaatt gaagctggtg atcgggaaat 1680 tgagataaaa gactctgata gtatttatga aactgacact acaggggatt gtattgaagt 1740 tgaatagtgg ttgagttatt gaagtttaaa attcatatat atatatattt ttaggtggtc 1800 caaaagaggg gtggtccgaa agtggggtac tcaact 1836 // ID MOLLY_SN repbase; DNA; FNG; 1862 BP. XX AC AJ488502; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Stagonospora nodorum DNA transposon MOLLY_SN. XX KW DNA transposon; Transposable Element; transposase; KW target site duplication; ORFm2; MOLLY_SN. XX OS Phaeosphaeria nodorum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; OC Phaeosphaeriaceae; Phaeosphaeria. XX RN [1] RP 1-1862 RA Rawson M.J.; RT "Transposable elements in the phytopathogenic fungus Stagonospora RT nodorum."; RL Thesis (2000) Department of Biosciences, University of RL Birmingham, Birmingham, United Kingdom. XX DR Genbank; AJ488502; Positions 3 1864. XX CC TA target site duplication. 64bp terminal inverted repeats. XX SQ Sequence 1862 BP; 478 A; 473 C; 506 G; 405 T; 0 other; acgtacctca cgggttggcc ggacacacgg tttggccgga cacttttgcc aagcccccac 60 caaattctac ctctcaacgt gatgcctcaa caacaacacc agatagaccc ttctagcgaa 120 cgtcatatac agactgccct tcaagctctt aaacaagacg cgacactgtc cttgcgacgc 180 gctgcagcta tctataacgt ctctcgagca acactaagcg atcgacgcgc tggacggcct 240 tcacaagcag attgctggcc taaaacaaag aatctaacta agactgagga ggacgtagtt 300 gttaagcata tacttgagct ggttacgcgt ggatttcctc ctaggctcgc agctgtggct 360 gatatggcta attccctgcg cgctgagcgc ggtctgggcc aagttggctc aaactggccc 420 agtacgttcg tcaaacgccg ccctgagctc caaacgaagt ttaatcgcaa atacgactac 480 aagagagccc tctgcgagga tcctgaggtt atacgagact ggttccggct tgtagagaac 540 atgaaggcga agcacggtat ccttgatggc gacatgtaca actttgacga gtctggcttt 600 atgatgggcc agatctcaac tggagcagtc gttacagctt cagagcgacg aggacggccg 660 aagacagtgc aacagggcaa tcgagagtgg acgacggtca tccagggcgt caacgcaaca 720 gggtgggcca ttccaccctt catcatcttc aagggccgcc accacctctc agcttggtat 780 aaggaggagg atctacctca taattgggtt attgcagtct ctaagaacgg ctggacaaca 840 aatgagctcg gtctgcagtg gttaaagcac tttgatgagc atacaaagag gagggttaca 900 ggcgcttatc ggctgcttat tatcgacggc catgagagcc acgactcgct tgaattccag 960 caatactgca aggataacaa gattatcact ctctgcatgc ctcctcactc gtcgcacctc 1020 ctgcagcctc ttgatgtggg ttgttttgcc tctttaaaga aggcgtacag acgccaagcc 1080 gaagagctca tgcgcaaccg gatcacgcac atcacgaaac ttgagttcct accgtgcttt 1140 aagcgcgcct ttgacgcagc aattactcct agtaatatcc aaggagggtt tcgaggcgct 1200 ggattggtcc catttgaccc agagcgggtc atattagccc ttgacgtccg catccgtacc 1260 ccaccgttgc ccaccgtcga agactgtccc tggcagtcgc aaactccaag taataccctt 1320 gaattaggat cgcaatcgac gcttgtaaag gcaaggattc agaggcatat agatagctca 1380 ccaacgtcta tggtggaggc ctttgagaag gtctcaaaag gggcagcgat tattgcgcac 1440 aagctagtgt tggcgcagaa ggagattgct gagcttcgag cagctaataa ggccgccacg 1500 cgacgtaaat cgcacaaaag aaagcgtgta caggaagaag ggaccttgac ggtcgaggac 1560 ggtcttcgac ggacgactct aaaggagttt ggtgcgcgta gtgatgggaa gaaggcgaag 1620 aagcaggttc gcgctggtgc aggcgagccc tcccaaaggc ggtgtggacg gtgcaatgag 1680 actgggcata atgcgcgtac gtgtaagaaa acagtagaag tagactctga atgatattgc 1740 atcttgcttt gtactataca gggccaaagt gggttgtttt gcgccagaat agggtggttt 1800 tggtgggggc ttggcaaaag tgtccggcca aaccgtgtgt ccggccaacc cgtgaggtac 1860 gt 1862 // ID Harbinger2-1_AAp repbase; DNA; FNG; 3550 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 13-AUG-2010 (Rel. 15.09, Last updated, Version 1) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-1_AAp. XX OS Ascosphaera apis OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; OC Ascosphaera. XX RN [1] RP 1-3550 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1213-1213 (2010). XX DR [1] (Consensus) XX CC Harbinger2-1_AAp belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-1_AAp is a consensus sequence of a family of CC autonomous Harbinger transposons that were active in the CC Ascosphaera apis genome recently. The consensus was derived from CC a few copies ~96% identical to it. The genome does not contain CC any full-size copies of Harbinger2-1_AAp. However, it contains CC ~10 full-size copies of nonautonomous elements that share termini CC with Harbinger2-1_AAp. Most of these copies are flanked by the CC ANT target site duplications. Therefore, the same should apply to CC Harbinger2-1_AAp. This transposon codes for the 370-aa TPase and CC 375 unclassified protein. XX FH Key Location/Qualifiers FT CDS 279..1385 FT /product="Harbinger2-1_AAp_1p" FT /note="Harbinger TPase." FT /translation="MDRLILLHILQENARLNANHDDNPRRQVRRRRQGQRT FT HRGNYPRFKFNLDRLHDQDCKLKFRMYKHEIRAILPYMRLQYIIYRYHNKP FT SQELAFCIFLARLSYSTRLYELPYYFGVSVSYIDAVFNDVLDHFGSIYSEF FT MRWDHSRLNFSQMRQYADAIGEGCIWGFVDGTTQKIARPTVNQRMFYSGHK FT RYHCYKYQAVVTPDGLVSSLAGPVEGVRGDWALFHESKIADDIIEEFDSNG FT VPIGEELCLYGDPAYAMTGVTMSSYRRPPGGELPPEYVEWNRHMSTKRIAV FT EHFFSTVKNRWGLMSLHTINRIGSTPVGNLYRAACFLNNCLTCLRGYNQIS FT LQFQCQPPSLEQYLALVDRADASESS" FT CDS 3153..2032 FT /product="Harbinger2-1_AAp_2p" FT /translation="MSYNTGTLFFANETPFGPVSQPVAVPDSIEIGDEWAD FT TAAPPSPTQSIESESNPRRVSSTPTSSFPPSHDGQSQLSQAEDTMPVNNHV FT TAFRPHGDGTKIPDNEKLSLCQFAIAHAEEYRAKRKCDFNDMLGEFCRREL FT GRHVSRPGDVLVRVVKQVEQREKYLLKSTGVAIPDSDLLQAGASWRDIVKD FT VEKIEEAWQDEVNKKRVSGMRENMVTSQHKRANDEPANERLKRQNTNDELS FT RLAQTMLRSEELKVQRQQVELDSARTQRIQEASLEERMGTLESRIDEKLVR FT MEEMMEKTLSSVETLQYQRRQPLPKLTPQEPRQHVWSASQPVSMAASPSQQ FT PSLRAQATQMNPFGLHPPPRFTYGNSNRWDM" XX SQ Sequence 3550 BP; 917 A; 799 C; 878 G; 952 T; 4 other; aggggttttc tgtagcagac ggtcaaatcg acgacggtca aatctgaacc gtggaacggg 60 tagcctgatg cagtttagtg aattacatca aatacgccgc tagtattctg ggcgttttgt 120 gtgtaaaatt ctcggcatag tggataatgt gcatttcatt aaatcttcta gaagatattt 180 aaatcgacgt cgatcagtcc agatctatag accctgaaga aaacaacaac ctcaattctc 240 aatctaatct cagactgtcg tgtcataata acaacatcat ggatcgtctc attcttttgc 300 acatcttgca agaaaacgcc aggcttaacg caaaccacga cgataaccca cgacgtcagg 360 ttcgtcgtcg tcgacaagga cagcgaacgc atcgaggaaa ttatcctcgc ttcaagttta 420 atcttgatcg actccatgat caagattgca aactcaagtt ccggatgtat aagcatgaga 480 ttagggcgat acttccctac atgcgtctcc aatatataat atataggtac cacaataagc 540 cttctcaaga gcttgcgttt tgcatatttt tggctagatt gtcttattcc acaagactct 600 atgaactgcc atattatttt ggagttagcg tgtcatatat tgatgcagtg ttcaacgacg 660 tgctggatca ttttggcagc atatattcgg agttcatgag gtgggatcac tcgagactta 720 acttcagtca gatgagacaa tatgccgatg caataggcga aggttgtatc tggggtttcg 780 tcgacggtac gactcagaag atagcgaggc cgacggtgaa tcaaaggatg ttttactcgg 840 gtcacaagcg gtatcactgt tataagtacc aagcagtcgt gacccctgac gggctggtgt 900 cgtctttggc agggcctgtc gaaggtgtac gtggtgactg ggctttgttt cacgagtcga 960 aaattgccga cgacatcatc gaagaattcg attctaatgg tgtgcccatt ggtgaagagt 1020 tgtgtctgta tggggatcca gcttatgcca tgacaggggt gacaatgtcg tcttaccgac 1080 gaccacctgg aggagagctt ccacctgaat acgtcgaatg gaaccgtcat atgtcaacaa 1140 aacggatcgc tgtggaacat ttcttctcga cagtgaagaa cagatgggga ttaatgtcgt 1200 tacataccat caatcgaatt gggagcacgc ctgtcggtaa cttatacagg gcagcttgtt 1260 tcctgaacaa ctgtctaact tgtcttcgcg gttataacca aatatcgctc caatttcagt 1320 gtcaaccacc ttcattggaa cagtatttgg cgctcgtgga tcgagctgac gccagcgaga 1380 gctcgacata gagacaggga cagggatagg ggggaagggg agaatagaca cagagtgagg 1440 taaatgatat gggtgagaat tgaacgactt agtcaaattc aagagcttgt atgggagaag 1500 aggaaaggga gagagagagg gatagagaga caattcgctt attctttcta taccctactt 1560 tcttcaatct cctgaattgg acatcaagag cttagtcgag ctctagagag gcaattgagg 1620 atggcaaaca ggccaatttg tttagttaac gcgtcuuuug tctttagcaa acagctttta 1680 ttacctagag aggcagtgtt caatatcaat agtgtgcgag tgcagagatt tcaatgtgcg 1740 agtgcagaga tttcattcat gcagctggtg atggtgaagt gaattgcaat tcaggaggtt 1800 aggggttaat catgtagaat tcggaaactg accaatcaga gcgcgtcatt tgcgggctcg 1860 gcgcggaatc aattaaaatc caaccaatca cagcgcgacg aaggacttag agaaaaaaaa 1920 agtgatttca aagacaataa cacaaagctc tgaatttgtc taagtacaac tctcacccaa 1980 ctctctaaac cacctcaatt cagtcaattt gtctcttttt cagcttcaaa tcatgtccca 2040 tctgtttgag ttcccatacg tgaagcgagg aggcgggtgc aagccgaatg ggttcatctg 2100 cgtcgcttga gcacggagac tgggctgttg agacgggctt gcagccatcg agactggctg 2160 agaagcagac caaacatgct gacgaggctc ttgaggtgtc agttttggca gcggctggcg 2220 tctctggtat tgcagagtct caacgctaga caacgtcttc tccatcatct cctccattcg 2280 cacgagcttc tcatcgatcc gagattcaag agtccccatc ctctcctcga gggaagcctc 2340 ttgaatcctc tgtgttcggg cagagtccaa ttcgacttgt tgtcgttgga ccttgagctc 2400 ctcggatctc agcattgtct gagcaaggcg gctgagctcg tcgtttgtat tctgtcgttt 2460 caacctctca ttggcgggct catcgttggc tctcttatgt tgactcgtca ccatattctc 2520 tcgcatccca cttactcgtt tcttattcac ctcgtcttgc catgcctcct ctatcttttc 2580 cacgtcttta acgatgtccc tccacgacgc cccagcctgc agaagatcgc tgtctggtat 2640 tgcaacgccg gtggatttca gaagatactt ctcacgttgt tcgacctgct tgaccacacg 2700 taccaaaacg tcacccgggc gagagacatg tctccccagc tctctgcgac agaactcacc 2760 cagcatatcg ttgaagtcac attttctctt cgctcgatac tcttcggcgt gggctatggc 2820 aaattgacag agactaagct tctcattgtc cggaatcttt gtaccatccc cgtgaggcct 2880 gaatgctgtg acatggttgt tgacgggcat ggtgtcttcg gcttgggaga gttgactctg 2940 tccatcgtga gaagggggga aagaagacgt tggcgtcgac gagacacgtc tggggtttga 3000 ctcagactca attgactgtg tcggcgaagg gggggctgcg gtgtcagccc attcgtctcc 3060 tatctcaatg ctgtcaggga ctgcgacggg ctgagagaca ggaccgaagg gcgtctcgtt 3120 cgcgaagaat agagtcccgg tattgtacga catgttggcg ttgaattggg ttgacttggg 3180 ggatttgaag tcgactttga gtaggtgata attcactgaa taaagtctct ttctgcaagg 3240 tatgttgttg ttgttgtttc ttcgctccaa attcaattcc tttgattaaa caaatctata 3300 tacttcccta ctaattataa caagctttcg cctagattac cctacagggc tgatccagac 3360 tttgacaagg agttgacggg tggaaaccaa ggctacggtc aactgaccgt agtacaacta 3420 cgatacagtc gcgacggtca gaacagtgga gtagctgaaa agctcaaaac cgagttaatc 3480 ggtgctcttt cctaatcggg taaaaaaaac tggagaccgt cgacttgacc gtatgctaca 3540 gaaaacccct 3550 // ID TCN1-I repbase; DNA; FNG; 5192 BP. XX AC . XX DT 30-MAR-2005 (Rel. 10.03, Created) DT 21-APR-2005 (Rel. 10.03, Last updated, Version 1) XX DE C. neoformans LTR retrotransposon - internal consensus. XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW reverse transciptase; TCN1-LTR; TCN1-I. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-5192 RA Goodwin T.J. and Poulter R.T.; RT "The diversity of retrotransposons in the yeast Cryptococcus RT neoformans."; RL Yeast 18(9), 865-880 (2001). XX RN [2] RP 1-5192 RA Loftus B.J., Fung E., Roncaglia P., Rowley D., Amedeo P., RA Bruno D., Vamathevan J., Miranda M., Anderson I.J. et al.; RT "The genome of the basidiomycetous yeast and human pathogen RT Cryptococcus neoformans."; RL Science 307(5713), 1321-1324 (2005). XX RN [3] RP 1-5192 RA Gentles A. and Jurka J.; RT "C. neoformans non-LTR retrotransposon TCN1."; RL Direct Submission to Repbase Update (15-MAR-2005). XX DR [3] (Consensus) XX CC 501 bp LTR deposited as TCN1-LTR. XX SQ Sequence 5192 BP; 1606 A; 1487 C; 945 G; 1154 T; 0 other; gtaaatattg atcttccaca cttgtggttg gttggtatag acttcaagta ccttttacct 60 tcgacacata cgtataccct tatacaactt catcaacaac ttcatcaaca acctcagcca 120 cctataacct cataccacca cttcgtatac catatcctat atcatgtcag gtccatccac 180 tcgtagtggt cgagctgtgg aaaaggtcga aaaaggcaag gaagtagaac ataccctcga 240 tgacgaccac aatcccgcgg gttcattcaa caccaatcct caatccgatc catttaccgc 300 cgacaacaca tcaaacgaca cccaaaccca actcgagatg atgcgcaacc atattgcaag 360 acttgagcaa cagaaggaag agttgacgca taagttggaa gagagcaaag tcgaacgaca 420 gatgtttgat aatagcgaag ataatgaggg cgaaaacgaa caagaattgg atgaagaaga 480 cgaagaacct agatcaagcc gcgacctgtc agcgcaaaca ccatacccag aagttaaaag 540 ggaatacagc cgacaacgca cctcagtacc ctccagtaga cctcaagaac cgaaggtatc 600 ccaacccgag tactaccatg ggcagtatac caagctctca acctttatca ctcaagtgac 660 aatggtgatt accctccaac cttctcgttt ccctaccgag acctccaaag tcctatacgc 720 cggatctttc ctccgagata ccccattctt atggttccaa cccttcgtaa ccatcgatcc 780 ccagcccaag tttatgctgg acttcaagaa attttgtgcc gaattaagga agaacttcgg 840 agatccagac gaagaacaga cagcagaacg acaactaaac actgttcgtc agcaaggttc 900 tgtatcctca tacctcgcaa cctttatgcg ttatgccacc ttggttcagt ggaacgacga 960 agcgaagaag gcttgcttct acaagggctt gaaggatgac atcaaagacg aacttgccag 1020 actacccaaa gccaagtcat tcaagaacct ccaagacatg gcaatccgca tcgacagccg 1080 tcgatatgaa cgggtattag caaagcgaga ccagcaacca aaggcgcttt tcaacgccac 1140 ccgaagcgac tacacccgca cctcttacaa taacaatcac cccaacaact tcagacgttt 1200 ctctgcggcg aatagcatgc cgataaggtc taccactgcc aacaccacct tcaataaaga 1260 ggtgacgccg gcagtcaacc tgagggctgc atttgtccca agttcagcta ggataaccag 1320 acgtggacgt ctgactccag aagaatatca gaggcgaaag gatcataacc tctgcctcta 1380 ttgcgccgac aaaaaccatc aagtcgccaa gtgcccagtg gtcccctcgc aacaatccaa 1440 tactactctc ccttcaaaaa actagatatg ctcttgtctg ccaaagtcga agaaggtagc 1500 cgggaacaag agcgtactat caaaccggcc aatacagact cctgcgaata tctccaaact 1560 ctcgaagata ataacaaaaa caacaaaaac caactcacaa tcgactttct ctttcacaac 1620 aatgtttatc aagctttaat cgattccggt gcctctacaa acttcatcga caaaagattc 1680 gtccagacct ttaacctcaa aaccacgaaa atagaagatt cgatcccatt atacctattc 1740 aacgctgcgg gtcagcgaac tataattgaa gaagaagcca acatcctggt caacttccag 1800 aaaccattcg gacacacctt actccgactc ctcataaccg acatcggctc ctaccccatc 1860 gtcttaggta taacctggtt acaagagcac aatccgtcca tcagctggga aacactttcc 1920 atacacccac ctgtatcaca gacgacgagt gccaacttag ccatggtcat caccaatgac 1980 aaacctccaa aagaaaacac cgatgccgaa atagtaccta aagaatacca tcaatatcta 2040 gatgtattcg acaagaaaag cgccgataca ctcccagaac ataggtcttt cgaccaccat 2100 atccctctcg aagaaggaaa gaacccacct tttggtccca tatacaatct ctccgaaaca 2160 gaacttgaag ctctccgcga ataccttgat gagaatctta agaaaggttt tatccgaccg 2220 tccgaatcac cagccggagc acccatactc tttgtcaaaa agaaagacgg atcgcttagg 2280 atgtgtgtcg attaccgggg aatcaacaag atcaccatca agaatcgcta tcctctacca 2340 ttgatcgccg agctcctaga tcgactcaaa tcagccaaag tattcaccaa gatcgacctg 2400 cgaggagcct acaatttact tcgcattaag gcaggcgaag aatggaaaac agctttccgt 2460 actcgctatg ggcatttcga atatttggta atgccgtttg gcctcaccaa tgcccctgca 2520 tccttccaac atctcatgaa ccacaatttc cgcgacttgc tagacatatt tgttatcatc 2580 tacctcgacg acatcctcat ctacagccca gacttggaga ctcaccagtc acacgtcata 2640 caagtcctag atcgcctccg ccaaacccaa ttatatgcca aagcttcaaa gtgcgagttc 2700 catcaaacct cagtagagtt cctaggtttc gttgtcagcg atcaaggtct atcaatggac 2760 accaagaaag taaagtctat cacggaatgg ccgacacctc gcaatctccg tgatacccaa 2820 tccttccttg ggttctgtaa cttctaccga aggttcatca agaactactc tagtatcgcc 2880 aaacctctta tcgacttgac aaagaaggac ttaccctttg tatgggaaga acctcaacga 2940 acatctttcg aagcactcaa aaagagtttc acctctgttg atctcctacg tcattacgat 3000 ccgaccaagc aactcatcct tgaaaccgac gcctccgact atgccatcgc aggtatctta 3060 tcacatgaaa tcgacaagaa actcgaacca gttgctttct tctctcacaa aatgttgcct 3120 gccgagttaa actatcctat tcacgacaaa gaaatgttag caattgtttc agcattcaaa 3180 gaatggcgac attacttcga aggtgctaga gaaaccattc gtgtctacac cgaccacaga 3240 agcctggagt actttatgac taccaagcaa ctcaatcgac gacaggcgcg atggtctgaa 3300 ttcctagccg actttgactt caatatcatc taccgaccag gcgtacaagg cacaaagcct 3360 gacgcactca cccgaagaca tgattatcat ccactcgaga aaggctccag ccttactact 3420 gctgccaatc ctcagaattt ccagactctc cttcgccctg gacagtactt gggtactgcc 3480 acaaccggac tcgatcggtt ggaaatatct tcgcccatca agtcattgtt gaaaaccggt 3540 ctagaaaccg atgaatcagc aaaaccattc ttggacaaag ccaaccatcc ctccgaagct 3600 cacccatata ctcgagacga tgaaggactc ctcagatatg gcgaatcatt ctatgtccca 3660 gccaataacg agctacgcac cctcgtcacg aaagaatgcc atgatgcact cactagtggg 3720 catcccggac gacgcaagac tatccaactc atccgacgcc attactggtg gccaggccta 3780 aaaggcttcg tcaatcacta cattgattcc tgcgatcttt gttgcagaac taagacaaga 3840 cgtcatcagc cctatggcga actcaagtct ctacccattc ccccatatcc ctggtcatct 3900 gtatcgatgg acctcattga acaacttccc ccatcacacg gctacaacac catccttgtg 3960 atcgtagacc gactcaccaa gatggctctc tttatcccca caacgactag cctcaacgcc 4020 gaggaactcg cccaattata tgtcacccac gtcttctcca agcatgggat tccgaccagt 4080 attgtatcag atcgtggatc tgaattcaca tcccgctttt ggcgagcatt cacacaactc 4140 ctacacatcg agttagaact cagtacagct tttcacccag aaacagatgg acaaaccgaa 4200 cgagtgaacc aggtcttaga acaatatctg cgcctttata ccgattataa gcaaaaggaa 4260 tgggcaccgc tactcccagt tgcggaattc acttacaaca atacgcccca ttcgtccact 4320 accatgtccc ccttctttgc caacaaaggg taccatccca gggcatcgtt tacccccgat 4380 gacaacgttc ctattttcag cccacctgcc agagcctcca tcaccgactt gagcaagctc 4440 cacgaacacc tcaagataga aatgtccaaa gcacaagaga gtgcagcact acagtttgat 4500 aagcaccgtg ccccacttcc cgaatatact atcggcgaca aagtctggct atctgcccgt 4560 aacatcaaaa cgaaacgacc caccaagaaa ttagatcacc gctatctcgg tccctacacc 4620 attatcgcgc gcgtttcttc ccacgcgtat cgccttgagt tgccgaaatc aatgcgtatc 4680 cacgacgtct tccacgtcca attgcttgag aaatatattg agaatgagat cccagggcga 4740 acacaagtcg caccatcacc tatcgaagtc gaaggtgacc tagaatacga agtcgagtgc 4800 atcctcgatc atcgatttta ccgaaaacgc cgccaattcc ttatcaagtg gctcggctac 4860 agtgccgaac acaacagttg ggaacccgaa accgctctag aaaatgcttc agagattgtt 4920 gatcagtata agtcaacaca ccgattatag gaaaccaagt tcatagtaac agttcagaga 4980 aattattcca aacattgcga aaacattttt agttcataga cttagttcat aaatttttca 5040 aagacaaatt cttcacaacc agttcataga aatttattcc atagctccag caaattttag 5100 ttacaagtac acaacagaac aagccgcaga cggcatgacg gagcgaccgt cttcgaaggg 5160 gggggtgact gtcacgagcc tgcacaaaga ag 5192 // ID TCN1-LTR repbase; DNA; FNG; 501 BP. XX AC . XX DT 30-MAR-2005 (Rel. 10.03, Created) DT 13-JAN-2011 (Rel. 10.03, Last updated, Version 2) XX DE C. neoformans LTR retrotransposon - LTR consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; TCN1-LTR. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-501 RA Goodwin T.J. and Poulter R.T.; RT "The diversity of retrotransposons in the yeast Cryptococcus RT neoformans."; RL Yeast 18(9), 865-880 (2001). XX RN [2] RP 1-501 RA Gentles A. and Jurka J.; RT "C. neoformans non-LTR retrotransposon TCN1."; RL Direct Submission to Repbase Update (15-MAR-2005). XX DR [2] (Consensus) XX CC Internal segment is TCN1-I. XX SQ Sequence 501 BP; 146 A; 125 C; 102 G; 128 T; 0 other; tgtcacgagc ctgcacaaag aagaagagat aagatatcat aggagggagt tacgtaatag 60 gaaggcaaga tccgattcag ataagaaggt ccagctggac ctccagttgg acctccgaga 120 aaagaactgg acctccagct ggacctccag ctggacctca aaggatataa atagatttct 180 gtagaagtat ataaagggga gctttgtcct cgatcttgat cttcttcccc tcgaagatca 240 atatttcata agttactttg cgaaaggtcc tcgagctccc agtgctcact ctcgtcttac 300 cttgcaccac cttcgacata aacttactcc actagtatat aagcttgcct gatcttccca 360 agcgaatata cctccgccct ataccatacg ccaacagaca agtgtcaaga ggtatatcat 420 acatatatct cattgcttag ttaaactacg gctttctatc tcgtctccaa ggccggacct 480 tgttggggac gagtcgtaac a 501 // ID YPRIME repbase; DNA; FNG; 3187 BP. XX AC M58721; XX DT 24-SEP-2001 (Rel. 6.08, Created) DT 24-SEP-2001 (Rel. 6.08, Last updated, Version 1) XX DE S.cerevisiae Y' element. XX KW Y' element; YSCYELR; YPRIME. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-3187 RA Louis J.E. and Haber E.J.; RT "The structure and evolution of subtelomeric Y' repeats in RT saccharomyces cerevisiae."; RL Genetics 131(3), 559-574 (1992). XX SQ Sequence 3187 BP; 901 A; 636 C; 811 G; 839 T; 0 other; aatttggcac cctacatgtt tttgttacta cacgtagatg agctatcgat tttttctgca 60 taccaagcaa gtttacctgg cgaaaagaaa gtcgacacag agcggctgaa gcgtgatcta 120 tgcccacgta aacccattga gataaagtac ttttcacaga tatgtaacga tatgatgaac 180 aaaaaggacc gattgggtga tattttgcat attatcttgc gagcatgtgc actcaatttc 240 ggggcgggtc cccgtggtgg cgctggtgac gaagaggatc gatctattac gaatgaagaa 300 cccattattc cctctgtgga cgagcatggc ctgaaagtat gtaagttgcg cagtcctaac 360 actccacgaa gactcagaaa aacactagat gccgtgaaag ctttattggt gtcgtcttgt 420 gcttgtaccg caaggattta gatatatttg atgacaacaa cggcgttgca atgtggaaat 480 ggatcaaaat tctgtaccac gaagtagcgc aggaaaccac gctgaaggac tcttatagaa 540 taactttggt accttcttct gatggtatat cagtatgtgg aaaacttttt taatcgcgag 600 tatgtccgcg gcttttactt tgcatgcaag gctcagtttg ataacctttg gggagagttg 660 aacaactgct tttatatgcc tacagtggtt gatattgcca acctcatttt gcgtaatcga 720 gaagttttgt tcagagaacc gaagcgagga attgacgagt atctggaaaa cgattctttt 780 cttcaaatga tacctgttaa atatcgtgaa attgtgctgc ccaagttgag aagagatact 840 aacaaaatga ccgcggctct taaaaataaa gtcgctgttg caattgacga gcttacggtg 900 ccacttatgt ggatgatcca ttttgccgta gataccctta ccgttatcca gagcttcagc 960 tactcgcttt tgccggtcct cagcgcaacg tatacgtcga tgatacaaca agacgcatcc 1020 aactgtacac tgattacaac aagaacggtt catcggagcc tcgactaaag acgcttgacg 1080 gactcacctc agattacgtg ttttattttg tcactgtgct aaggcaaatg caaatatgtg 1140 cgcttggtaa cagttatgac gcttttaatc atgatccttg gatggatgtg gtgggatttg 1200 aggatccaaa tcaagtaaca aatcgagaca tttcgaggat agttttgtat tcctacatgt 1260 ttctgaatac cgcgaagggc tgtctggttg aatacgcaac ttttcggcag tacatgaggg 1320 aacttccgaa gaatgcacct cagaagctga attttcggga gatgcgtcag gggttgattg 1380 ccctaggacg gcactgcgta ggtagcagat ttgaaacaga tttgtacgag tcggcgacga 1440 gtgaactcat ggccaatcat tccgttcaaa cagggcgaaa tatttacggt gtggattcct 1500 tttcgttaac tagtgtcagt gggacgaccg ccactttatt gcaggaacga gcttccgagc 1560 gctggattca gtggttaggc cttgaaagcg actaccattg ttcattctcc agtactcgga 1620 atgcggaaga cgtagtggca ggtgaggcgg cgagttcaaa tcatcatcaa aaaatttcaa 1680 gagtaacgcg aaaaaggccc cgagagccca agagtacaaa cgatatcctc gtcgcaggcc 1740 agaaactctt tggcagctcc tttgaattca gggacttgca tcagttgcgc ttatgttatg 1800 aaatatacat ggcagacaca ccctctgtgg cagtacaggc cccaccgggc tatggtaaga 1860 cggagttatt tcatctcccc ttgatagcac tggcatctaa gggcgacgtg gaatatgtgt 1920 cgtttctgtt tgtaccgtac acagtgttgc ttgctaattg catgatcagg ttgggccgac 1980 gcggttgctt gaatgtggcc cctgtaagaa actttattga agaaggttac gatggcgtta 2040 ctgatttata cgtggggatc tacgatgatc ttgctagcac taatttcaca gacaggatag 2100 ctgcgtggga gaatattgtt gagtgcacct ttaggaccaa caacgtaaaa ttgggttacc 2160 tcattgtaga tgagtttcac aactttgaaa cggaggtcta ccggcagtcg caatttgggg 2220 gcataactaa ccttgatttt gacgcttttg agaaagcaat ctttttgagc ggcacagccc 2280 ctgaggctgt agctgatgct gcgttgcagc gtattgggct tacgggactg gccaagaaat 2340 cgatggacat caacgagctc aaacggtcgg aagatctcag cagaggtcta tccagctatc 2400 caacacggat gtttaatcta atcaaggaga aatccgaggt gcctttaggg catgttcata 2460 aaattcggaa gaaagtggaa tcacagcccg aagaagcact gaagcttctt ttagccctct 2520 ttgaaagtga accagagtcg aaggccattg tagttgcaag cacaaccaac gaagtggaag 2580 aattggcctg ctcttggaga aagtatttta gggtggtatg gatacacggg aagctgggtg 2640 ctgcagaaaa ggtgtctcgc acaaaggagt ttgtcactga cggtagcatg caagttctca 2700 tcggaacgaa attagtgact gaaggaattg acattaagca attgatgatg gtgatcatgc 2760 ttgataatag acttaatatt attgagctca ttcaaggtgt agggagacta agagatgggg 2820 gcctctgtta tctattatct agaaaaaaca gttgggcggc aaggaatcgt aagggtgaat 2880 taccaccaat taaggaaggc tgtataaccg aacaggtacg cgagttctat ggacttgaat 2940 caaagaaagg aaaaaagggc cagcatgttg gatgctgtgg ctccaggaca gacctgtctg 3000 ctgacacagt ggaactgata gaaagaatgg acagattggc tgaaaaacag gcgacagctt 3060 ccatgtcgat cgttgcgtta ccgtctagct tccaggagag caatagcagt gacaggtgca 3120 gaaagtattg cagcagtgat gaggacagcg acacgtgcat tcatggtagt gctaatgcca 3180 gtaccaa 3187 // ID AF018033 repbase; DNA; FNG; 5977 BP. XX AC AF018033; XX DT 24-FEB-1998 (Rel. 3, Created) DT 24-FEB-1998 (Rel. 3, Last updated, Version 1) XX DE Magnaporthe grisea non-LTR retrotransposon MGL genomic sequence. XX KW AF018033. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-5977 RA Meyn III A.M., Farrall L., Valent B., Chumley G.F. RA and Orbach J.M.; RT "Magnaporthe grisea repeated DNA element MGR583 is a member of RT the LINE-1 class of polyA retrotransposons."; RL Unpublished. XX RN [2] RP 1-5977 RA Meyn A.M., Farrall L., Valent B., Chumley G.F. and Orbach J.M.; RT "Direct Submission."; RL Direct Submission to Repbase Update (08-AUG-1997)Plant Pathology, RL University of Arizona, P.O. Box 210036, Tucson, AZ 85721-0036, RL USA. XX DR GenBank; AF018033; Positions 1 5977. XX SQ Sequence 5977 BP; 1389 A; 1801 C; 1743 G; 1044 T; 0 other; caagcatcct ccaccattca tgggtcagac ccacctttgt tagcgattca cacccaaaca 60 caccaataag cttaacagct gaagaatttt cgccctccgc gcggtcgtca tggcctcacc 120 agaggtctca aaccgccgcg cgcgcccgca gagcacgccg cacggtttgc cgcagggcca 180 ggccgagtcg ggacacgtat ctctcgacac gcgcaccgct aacgcgcctc agccggctgg 240 ccgcggaagg tactccaccg tcccggccct ggccatcaaa acactgcagc aggagttgga 300 aaacgtggaa acagtcggca gctggctcga agaggtcttt gcagccaagc tcgaaagttt 360 acaggccccg gaggacgccg cgcttaggag aattgttctt gaacttgacg acgtgatcag 420 cggctggttc ctcagtcgca ccctccctga aaaagagcgt tcgcgctccc cgtccggttc 480 gccgaccagt tccagcgaaa ggcgcagcat tttaattacg aggacgggca cggcgtcgtc 540 ggcctctaaa ggcagaggca cgcccactaa caaatcggtc acatgggccg agcgagccgc 600 cacgccacca gcggcggccc caacgcgaat tttaaccccg gccacgcgct cgtacccgat 660 acgtacgacg cccggcaatg cacctgacag ctccgcaact ccctcccaat cgggccggga 720 ccgctcccaa gccccgaaac gtttgacaga acagccgtcc aaccgcatcc tgatccgcgt 780 aaatgacaaa ttgcggatgg tgacgaggga gccatacgcg gtaacgacca aattggccga 840 attggtctcg gtgccacaca gtgaaatccc aaacgccaag cgtaccccca cgggctgggg 900 tgttacggtg gcctctgagg aaacacggca aaaactcctc aaccccagcg cggtcaaggc 960 cattatggac gcattggacg cgcgggaagt cactgtcccg acaacctggc acacatacgc 1020 cgtctctgga gtgccccgaa cgctcaattg cctggacgga agaaaggacg tacatgaggt 1080 aatccaggag gagattaccg tggcagcagg ccagcagcca gtcaactggc atatttccaa 1140 acatggttac gacccacata cggctgaggg cacgtggata gtgtccttcc ttcaacccgt 1200 aaagcccttt cagctttttg gagtgtcgaa acgtgcgcgg aaggttgaaa aatcacgcaa 1260 aattacacac caccacgacg gttgccaggg atattgcgaa atacgtcgct gcgtacggca 1320 agcgcgttgc ggcatatgtg gtgaagcaaa acatgcgaca gaggaagagc cgtgcaaggc 1380 agcccccaaa tgcgttaatt gccacggcca tttcccatcc ggacatgaga attgccctgc 1440 ccgacctttg gtggtaaatg ggaagcttga acgaccttca cagcgtaaac ttaaggggat 1500 tcgcagaatc ggacgtgcca accgtgccgc gattatcaac gaccgggccg aaacggcccg 1560 ccgagagcca gcacctgcaa tcccggtcct aagcacctca tcgcagcatt cgcaaacctc 1620 gagctcccga tcgagcattt caaacaaaag agcgcggcca tgcgaggcgg caggggcgga 1680 catccgtaac ttcctgcagg ttgaacagga acgcgtgcac gacgaaatcg tttgggcagc 1740 cgaaatggag gaggacgcag cggctgccga accttgcccc gctgatggga tagacttgga 1800 agcaacccgt cgattaatat gacgaaatac tcgctcggca atatgcagcg ggaatgcctc 1860 gacgtagttt gggccaacgt aggtaaaagg atgggtgtgc atctgagcct attggagttg 1920 tgccaccaga gaaaggtgga cctggttaac gttcaagagc catggtgcgg gctaaatacg 1980 actacacaaa cgcacccggg ctatgatgtt tttgcgccag tggacgaatg gcacgccaac 2040 acttacgaag ccatgactgg gctccggccc cgggtgctca cctacgttaa gaagggggca 2100 gccctaaggg ccgcacaacg acggctaccg cagggccaaa atacgcggga catactctgg 2160 ctcgaaatta acggaatatt gtttgttaac gtatataggg ctccgggcac tgaagccgcg 2220 ctggaaatgg tatgcaatac cgtgccaaat ggacccacgg tgctaggcgg cgattttaac 2280 gtagcggctg ctgcatacca gccgggccgc gcaaacgcac gcggagggga ccaactgacg 2340 gcatgggcgc aagcccaggg gatgagtttt acaggaaata tcggcgtgcc cacccaccgc 2400 gacgggggtt tactggatat ggtcttttcc aacctcccca gcacaataac tgtggttgac 2460 agcagtcttt acacaggctc cgaccacgaa tccctttata ccacgctgcg gacgcgcggc 2520 gccccccgcc cggaggcgat caacgtttcg gttagggacg accggttacc aaagttcgcg 2580 gagctacttg cttttggcat gcaagacatg ccggacccgg gatccgcggc cgatgcgtac 2640 gcattggacg cgtgggtagc tgaatttaca actttatggg agcaagtgac gtgggtcgtg 2700 ggtacgccgg cgggaaaaag ggacagctcg gctccctggt ggaccgaaaa ctgccagcgc 2760 gtctggtccg aattccagcg ggttaaacgg agcgctgtaa atagggcaga cgcctctgcc 2820 gaggaaaaag cctatacgaa aggggtgcgg gccgcgaagc gggagtactg gaggcaccgg 2880 atcgaccaac tgcgcgacga taaggatttg tggaacatgg tgggctggct gggagccgga 2940 ccacgcctcc ggtccccgcc gctggttatt aacggcgagc aagtgagcga gcctttagca 3000 aaagcggaag cactgcaacg ggaggtgctt ggccgatttt cggcggagga tgacctgcag 3060 ggagacccct tggaggcctg gtcgccggac gaggctaaaa tcccttggga cacccaggtt 3120 agtgcggaag aggcggagcg ctcctgcatt ggggttacga gcacgtcccc gggcatcgac 3180 ggaataaccg tccggctact aaaagccgga tgggcttcgt tggccgagcc ggtgcgcagg 3240 ctctaccaac gttgcctgga actcggacat ttcccagcgc cttggaagaa ggccgaagtc 3300 gcgatgctac cgaaaacggg gaagaaagac cggagcagcg ttcgatcctg gcggcctata 3360 gccctcctct cctgcatcgg aaaaggcctc gagaggctcg ttgcacgccg gatagcttgg 3420 gccatacacg acaacgggct ccttagctgc acccacggcg gtgccctacc caaacgatcg 3480 gcgacggatc tggtttgtgc cctcgcccac gatatcgagc aggctttagc tcgcggggag 3540 gaagttaccc ttgtcgcatg cgacgtccaa ggcgccttcg acgccctcct ccatgggcga 3600 ttaatacgga aaatgcggag cctcgggttt agtaaaatgc tcctcaggtt cgtgattaac 3660 tttttaagcg gccgccaggc ccgagtccgg ctggagggta cgaccacggg ctttaggcgg 3720 cttgggtgcg gcaccccgca agggtctccc ctttccccga tcctatatat gctatatttg 3780 gcgtatctcg tcaaaaacgg tacgaagtgg cggttggcat acgcagacga cgtgcttaca 3840 tggaaatcgt caccctcgtt ggaggaaaac gtacgttggc tggaagataa actccgggat 3900 atgcacgaaa ttgcggcgga agagaagatc cattttgcag cggaaaagac agaggtgatc 3960 catatcacta agaaaaggca cggtcgcaac ccggaaatcc ggattaatgg tagaacggtt 4020 accccggtcc aactaccggg cggtcgacgc ggacaaagcg cctccggggc cgagcgctac 4080 ccgggcatgc gttggcttgg tttttggttt agccgacggc tagacgggcg ccgccacgtg 4140 gccgaaaggg ctgccaaagc aatggcggtc gctgcccacc tcaagagctt tggggcagta 4200 agatacggac cgcctgcggc tgcacttcgc aaggcagcgg tggcatgcgt gggttcctcg 4260 gccacctacg cagccgaggc atggtacaac ccagcgcaca agcaaagagg actcctcaaa 4320 gcattgaaca aaccgctggt tttagcggca cgggcaatcc tcccggcgta taaaaccacc 4380 ccctcgtcca ctgttctcag ggacgcagga ctaccctcgg cccgcgtcgc gctggcctac 4440 acccgcctga aatacggcgc ccgactaagg ctcgcggaca aggggcaccc ccttgtcagc 4500 cgcctgcgtg aaacacctcg tgcccgcaac tcgggccatt cggccacgac cctgcaaacg 4560 gctgcacaac ttctcccgcg gatccggaga ctagagttgc gcgcacctcg caatgccccg 4620 gattctcgca ctgaccccac cggaggagtc ccgaaagagg aagcggcccg ccgctttatc 4680 gaatggctgg acatggtatc acctgacgat atcgtggtat atacggatgg ttcggaaaaa 4740 cacgaaaaca actgcgtcca aatagggtac ggatgggccg cttttagggc gggcctggaa 4800 tttgccgcac gtgccgcatc tattacgccg gaaagccacg ttttcgacgc cgaggcgatt 4860 ggcgccctaa aagggctaca ggcggcagcc aaggcccagc caggcgcccg gatctggatt 4920 tgtgtggaca gcacctcggt tatttggggt cttagaggcg acgcgccgcg ttcgtcccaa 4980 tgggcctttc tggagttcca taaccttgtc gatctactcc gaaaacaaag taccgaggtt 5040 cgggtccgtt ggtgccctgg gcaccaggga atcccgggaa acgaccgggc tgacgagctg 5100 gccaaggccg gctccgccgg accgccggac ccagacccga gggctcagca aaccacgtat 5160 agcggtgccg gcacggtcct cagagccatt ctttcgaata tagagaagga ctggtggcgt 5220 aaagaactct gtgaacggtc ccccgcatat agggaatgga aattccaata cacaccgaga 5280 aaggagcccg aggaactgcg tttgccaaga cccctactgg gccattattt ggccatgagg 5340 accggccacg gcgatttcaa agcctaccat gaccgtttca accaccagga tgcaaacacc 5400 tcgtgtgcct ggtgctggaa gcggacctcc cctgaacacc cggtgcactg ccgcttttcg 5460 cgggcggtgt ggagaaactg gccgtggcct gacaacgacc ggccggtcgg gccgccagac 5520 cgcgcccaac gccgcaaatt cttccagaca agcctcgggc aaccgaaaag ctttgaggcg 5580 ttttcgatag ccaccaacta cttcagcgcc cgccccagag cggcccgcca gcgccccgcg 5640 cgccacgaac gcactttacg cctagggaca ccgatcgtaa acgactcgaa ctctgacgag 5700 gaatagactt actgcctttt cacccacact tcacggcaca agccgctaga cgaaccctcc 5760 gtgcacctta ggcacggggt cgcgtcagtg aactaacccc ctaagcagga ccgggcccga 5820 acccggtcag gcacgatccg cctctgccct ccttgttttc cccctgtgta aataaagaag 5880 atagaacgcg cgccgagata cccctcggga ggttgctaac ggccggctaa caagccgggc 5940 cgagcccggc gttaactaat actactacta ctactac 5977 // ID DNA-1_AN repbase; DNA; FNG; 3820 BP. XX AC . XX DT 09-JAN-2004 (Rel. 9, Created) DT 09-JAN-2004 (Rel. 9, Last updated, Version 1) XX DE Nonautonomous DNA transposon. Putative classification: MuDR DE superfamily - a consensus sequence. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW DNA-1_AN; nonautonomous DNA transposon; KW putatively MuDR superfamily. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-3820 RA Kapitonov V.V. and Jurka J.; RT "DNA-1_AN, a family of nonautonomous DNA transposons in the RT Aspergillus nidulans genome."; RL Repbase Reports 3(12), 203-203 (2003). XX DR [1] (Consensus) XX CC Nonautonomous DNA transposon. Putative classification: MuDR CC superfamily. CC 9-bp TSD. XX SQ Sequence 3820 BP; 1171 A; 676 C; 707 G; 1266 T; 0 other; ggtggttgca ggtgacctga ggtcaaaatt ttggtcgtgc gggacaaacc tgattatata 60 atggccttgg cagtcatgtg atgtacaacc tgtctttaca aagtttcagc ccgtactacc 120 tctttcaaat gtattaccat cgacatgtaa actagcttcc atactgccat tactagaggt 180 gctctaaact aaaagggaag attattactt cttaagtatt tagtaagcaa gggctctatt 240 acgaatcact aattagggtt gaaatggtat ctttggtgtc tctttccaat tgagaatagt 300 tatataggat tgaatacatc tcccgtacag gatatatata aaaggtcttt cgcacaaatt 360 ttcaattcaa ctacttggaa ggtacttgta aactagttat aaactactta gctcatgctg 420 ctgagcttcc tgtatatgta tcctcctctc cataagatca agttccaact tctcattttg 480 aagttgttgc aggcgaaagt cctcctcttt cttcttaaga tcagctctct tttgttgaag 540 ctctaattca agattctcta gctcaagctc ttgatgtctt tgttcaagat tcaaggcatt 600 tattgaaata gcacgtcgaa gattaccaga ccttattgac ctaatacttt gtaagtactt 660 tgcaactgct tgtaaaccac ttctaaagta cttggcagac ttactcatca tcaccaattc 720 ttgaggagtt ttgagacctt gatcttgtat ttccttgtgg taagggtaaa gctgattcgg 780 cttcagttaa gggagataaa gcagaccttc ggcgttttcg acttcctaaa agatagtagt 840 aagcaagtgg taggcaagta gtttgtaagc acttgcaaag caacacctga atacctactt 900 tcctaactta tatgctgaag ataattagct tccatattag aggtttgata taaatgatga 960 atattgaact cctggaagtt attatactat aagatatcat ccctatctag ctttgcagaa 1020 ctaggttatc ttagtagctt tgccagccag tttgcaagta gttagtgagt acttagaaac 1080 ttacttcttg actgcttaca ccagactcaa gtacttgcca gatatatata acttctgatg 1140 ggactgttca acagcatttg tatagttttg taataaatca aagtaataag gctgaatctt 1200 agagtatact ttatttaatc ctgccttgat cacagcccct ttcttttgag atgcccaatt 1260 ctggacatta gcattttcat actctatatc agttagtaac tggttaccaa gcagtaagta 1320 agtattcagt acttattaag agatccaata aagagtcata atcatcctcg gatttgcagt 1380 ctagaaggct tattattcgg ctccaaaggg gagaaccatg cttattagtt ctaatatatt 1440 ttaagattgt cctttggaaa tggactctgc agaagacaat aatatgctgt aaatactatg 1500 ttatatctca atattgagga ttaatttcag atagatagtg accaagtcct tggcagttag 1560 taagtatttt ggaagtagtt aataagtact tactggtata ttgttttgag tctatattaa 1620 taataatacc atagatccca gaaccatgga taggatcaaa atatattagc tgatgggaaa 1680 tcctctgaac aaggctgaaa acctgcttaa aaagtaaata ataaccctca gtagaatcaa 1740 tactggtaaa tacttggagt aatgtgataa ctagtaccca ggtagttagt aattgcttgc 1800 caagtagtta ataataatac ttacttttgc attggtctgg caggaatata gtaaaaagca 1860 ctttattaat atcttttgac tgtatttgtt tataagacat atcaacctta aaagatgaca 1920 gctgtaaaag tagttaaatt tgctctttaa aagtacaaag taccatggta ccctgagaat 1980 cataataata ttcttgaata tagtcctaag tacttgattt agtatctatt aactgctctg 2040 caactatata gcaagtactt accttcaagt tctggtcagt attctggagg aagataagac 2100 cattaatatc ctgtctgttt agataagata ttagatgttg cttttgaatt attgctgcaa 2160 ttcagtcctt attacaaaag ctagaataaa tctctgctaa tgtcgaagca ttgtactggt 2220 gacagaaatc ttcaagttgc ggatttcaaa ggaattgagc tagaactagt taccaactac 2280 ttcccaagtg gttggtgagt acttaccagt tgttagatta gggtcccgaa tctgttcaat 2340 aattctcttc acacctgcta gaattctttc aggtgccttg cttggtagta gtggtggatg 2400 tttataaatc ccgtgcgatg taaataatat ataggggcat aggtctgtat ttataggtac 2460 tagagtatta aagaccacat cacaggtagt gtgcttcaac tgaccagacc cctgaggatg 2520 atcttgatct ggtaattgct taataactgg ttgcaaatta gttaggaagt gcttaccaca 2580 gtatttttgg caacttgaca gaggtttaaa aacaccacat tcttcagtag ctggcagaat 2640 ctctttatta aagagatcct ctagaaactc caagtctatt actgtatgtc cttgaattac 2700 gcccctataa tgttttgtta aacctctata ggacctattt atacagccaa taaatggtgc 2760 atattctcta tgaatatcct gtatatttat tagctgcttc ttaagtactt agcaagtact 2820 tgagatatac tatctagtta tatcttttga aaactgcttt gcatgttggg agttgatcaa 2880 tgcatgcatg gcccttttcg aaaaaggcaa ctttggacca ataataacta agattgagta 2940 agtacttagt agccggttaa caagcagctt taatacctat atgcattatg ctttctaata 3000 tcagactcta agatctggat atctttctga gatctttgga tctcttgcta tgtatattta 3060 tcaacagatg tataataata agactgcagg gctggactga ggaatttata tgcataaatc 3120 ccagagcatc tccatgtcca ttttctgact tgacatccaa gaaatggaca gtaaacaggt 3180 tgtttttgtc caaaaagctg ttgttttgca tattagatct ggaaatactt agcagccagt 3240 taccaagtac ttgacatgca cttacactat cagcaagata ttccatttca acctgtgttc 3300 atcctttgga cacaacaaca tatgtatggc catatatatg cgttgtggga tattctggaa 3360 gattattgat atactcaata tttaatatta taagactgga ggagctttta gctcttgtaa 3420 gcggaataag catgtctggt tccttttatt tagttagcaa gcagtttaaa actaacttgt 3480 aagcagtggc gcaataacta tacctgtatt tctaaggaaa catcagcagc tggctcaata 3540 agatcatcat ccaaataggt tgaaatgttc tcaattgaaa tgttcccgga gtctggacac 3600 tccattgttc taactgctta gcaaccaatt gctaaatgct ttgatatttg tgtaggtcaa 3660 gtatcaataa attggaaaac agaaattgaa ttacaagtgt agacaccagt atttaaagac 3720 ctcgtgcggg acaaacttgc ttaataatga tcttggcact cacgtgcagg gggtgtaggc 3780 cgcatgagct caccgcttgg ctcatgcggc ctgtgtacac 3820 // ID MUDR1_FO repbase; DNA; FNG; 3299 BP. XX AC . XX DT 09-MAY-2005 (Rel. 10.05, Created) DT 03-JUN-2005 (Rel. 10.05, Last updated, Version 1) XX DE Mutator-like transposon, partial consensus. XX KW MuDR; DNA transposon; Transposable Element; Interspersed repeat; KW mutator; Hop; MUDR1_FO. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RA Chalvet F., Grimaldi C., Kaper F., Langin T. and Daboussi M.J.; RT "Hop, an active Mutator-like element in the genome of the fungus RT Fusarium oxysporum."; RL Mol Biol Evol 20(8), 1362-1375 (2003). XX RN [2] RP 1-3299 RA Gentles A. and Jurka J.; RT "Mutatorlike transposon."; RL Direct Submission to Repbase Update (09-MAY-2005). XX DR [2] (Consensus) XX CC 99 bp terminal inverted repeats. XX SQ Sequence 3299 BP; 973 A; 769 C; 711 G; 846 T; 0 other; gggaagccat acctgcacga ccgatggtgc acctaagatc acgtgacctt cgcaccaccg 60 gtcgtgcgaa taagatccgt tatgtaagag gcataggtgg ccttatggaa agggggtaaa 120 tttgcacccc aattcaacga tcaacagttt ctgcagcatc aattcaactt gccgtgcctt 180 tcttctacta taatggactc aattggcatt caccgtcaat tccctgatga tgctcttcct 240 cctgaaggcc actacagctc acgggaggaa ctacgttcag caattaatgc ttgggcagcg 300 ccacgaggtt atgcctttgt gatcaagaga tcttcgaaga ctgccaatgg aagaactcac 360 gttatcttca actgtgaccg tggagcaggg cgtattccct ccctttcaga ccgtcggcaa 420 actacaacac gtcgtacagg atgcctcttc tctgtattag caaaggaaag cctgtgtaag 480 accatatgga gtctcaggca tcgtcccgga cctcatttca gtcagcacaa tcatgaacca 540 agcttcagtg aagtggcaca tccaacactt cgtcagctat cacgccaaga ggaaataaca 600 gtcaatcaac tcaccaatgc cggcattgcg ccaaaggaga ttggatcctt cttacgcatt 660 acctcaaata cacttgctac gcagcaagat atctataatt gcattgcgaa gggcagacga 720 gatctctcta agggccagag taacattcat gcccttgcag atcagctcaa tgaggagggc 780 ttctggaatc gaatatgcct tgacgagagc agtagagtta cagcagtatt atttgcacat 840 ccgaagtcac tggaatacct taaaacatat cctgaagtgc ttatattgga ctctacatat 900 aagaccaata ggttcaagat gcctctcctt gatatagttg gagttgatgc ttgccaacgg 960 accttctgta ttgcatttgc attcctcagt ggtgaggaag agggtgactt tacctgggct 1020 cttcaagcgt tacgatctgt atatgaggat cataacatag gccttccatc tgtaatactt 1080 acagatcggt gcctcgcttg tatgaatgcc gtttcctcct gtttcccagg ttcagcccta 1140 ttcttatgcc tatggcatat caataaagca gttcagagct attgcaggcc tgcatttact 1200 cgaggtaaag acaatcctca aggtcttgga ggagagtctg aagagtggaa agagttcttt 1260 aacttttggc atgagattgt agcttcaacg actgaggaca tctataacga gaggcttgag 1320 aagttcaaga aacgttatat ccctgactat atcaatgagg tgggctacat cctggaaacc 1380 tggctagatc tctataagaa gagcttcgtc aaggcttggg tcaacactca ccttcacttc 1440 gagcaatatg ctacatcacg ggttgagggc attcattcgc ttatcaaatt acatttaaac 1500 cactcgcaag ttgatctctt tgaggcctgg agggtcatca agcttgttct gatgaaccag 1560 cttagtcaac ttgaggcaaa ccaagccagg caacatatta gcaaccctat tcgcgaatct 1620 agggtattat acagcaatat ccgtggttgg atatcacatg aagccctgcg gaaggttgag 1680 actcaacggg aacgactatt gaaagaggtt cctgtgtgta caggggtatt cactaggact 1740 cttggtctgc cttgtgctca tagccttcag cccttactga agcagaatca gccccttcta 1800 ctgaatcatt tccactcaca ttggcatctt cgacgcccag gaagcccccg gttccttatt 1860 gagcctcgta agcagtttga tcgtctaaca gctagttcaa cgctaccacc aacaagcaca 1920 caacgtgagc cttctacgtt tgagcgtatc gagaaggcac tacaaccaaa ggcaccgcca 1980 aagtgttcaa gatgtcatca gcaaggccac atgatgacct ctaaagcatg ccccctacgt 2040 tacaagcatc tattgcaggc tcctacccaa acctctacga tacaggcacc tactcaagac 2100 tctacaacaa cgcatataat aacacataca acaactcgct cgataacccg ctcactatcc 2160 ccatcatcct catcaggatc ctctatagta tccgagattg tagcctatac aacaacacat 2220 acaacacata caacaactcg tgtactatct cctccagcag ccagaccagg aactgttcct 2280 gcagcaaatg cgatagtagt gcccgcattg cgagctgatg atccccgtgc catcttccaa 2340 cgatataaag aagcacgaga ggcctggttt actacattgc ctcggggagc ctataagact 2400 aaccaacaat accgtagggc tatggggctg cctctacgtt atagtaaagc agagtatgac 2460 tggtgccttg actataagca aatggggagt cattgcaagg tgggaaacgg cactagagac 2520 tggactaaag aggagatgat gagttatctt gattgggata gagctgagaa cgatcgggtt 2580 gaacagagcg tagagataga aatggcagaa cagcctttct cacggcggcg aggtatgcaa 2640 gatatctggg atgcagccga gagagatatt atgttgcaag agagtatatt tcaagggaga 2700 tagcctagag gtataacccc acggtattaa catttgtaat actaagggca tatgtaatta 2760 taatatatta ttagaaagag aaaggaaagg caaattttca agtataagtg cagtgatcta 2820 atggcttaat ttaatagaga tataattgag cttatatata gggctaaatg taaatatatc 2880 taacacactc taccctccta attatagcaa ttaataaaga agacttacaa atccttcacg 2940 atgacttccg ctttattaat aatatggtcc tcaacaaggg agttaagcaa ggcggggata 3000 gcttccgcag cggctatggt gttataatga ggcattatac gttctttata gccctaagat 3060 agagcaatgt attgcagata gataatataa tacatattaa acagctaagc ttacaataaa 3120 ccattatatt acttcaattc tataaataac agctattttc gtagataaaa gagagataca 3180 cttacccaca tatgtacact cacctatgcc tcttacataa cggatcttat tcgcacgacc 3240 ggtggtgcga aggtcacgtg atcttaggtg caccatcggt cgtgcaggta tggcttccc 3299 // ID NHT1 repbase; DNA; FNG; 2198 BP. XX AC U78574; XX DT 08-FEB-1999 (Rel. 4.01, Created) DT 08-FEB-1999 (Rel. 4.01, Last updated, Version 1) XX DE DNA transposon NHT1. XX KW DNA transposon; Transposable Element; transposase; TIR; KW Fot1 transposon; NHT1. XX OS Nectria haematococca OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; OC Nectria; Nectria haematococca complex. XX RN [1] RP 1-2198 RA Enkerli J., Bhatt G. and Covert F.S.; RT "Nht1, a transposable element cloned from a dispensable RT chromosome in Nectria haematococca."; RL Mol. Plant Microbe Interact 10(6), 742-749 (1997). XX RN [2] RP 1-2198 RA Enkerli J., Bhatt G. and Covert F.S.; RT "NHT1."; RL Direct Submission to Genbank (15-NOV-1996)Botany, University of RL Georgia, Plant Sciences Building, Athens, GA 30602, USA. XX DR GenBank; U78574; Positions 1 2198. XX CC DNA transposon has 100 bp-long TIR and it codes for transposase CC similar to the transposase encoded by Fot1 transposon. XX SQ Sequence 2198 BP; 598 A; 514 C; 566 G; 520 T; 0 other; ccatccacaa cccctctttc ggcatacccc ctctttcggc aagcaaaata aaaaaagctt 60 caccaaaact caccaacttc acttatacca gaattggcca aagtaaatag ctacttagag 120 gacaatgcct ctatcgatta tagaaatgat tggagttaac gactttagct ctcttaggct 180 gtgcggggta cgcgatctat gcatgctgtg ctatggaaat agtgttggtt taatcatcaa 240 actcctcacc gctctgttcc gtgttttttg acctttgtct gcgacaacga caagaaaatg 300 cctaggtcga gacctcgatg gaaatataca gaggaaaaca tggcagaggc tatcttggat 360 gttactgatg atggcgtttc acctcctcaa gccgctcaga gacggggagt gcctcgaagc 420 actctagtcg acagacttaa cggccagaaa gccgtgaaag agcagattca gcctcgccga 480 cgtttgtcca agaatcaaga ggacagattg gctttctgga tcctccgtca ggaatctctg 540 ggctatgctc cgtcccacaa tcagatccgc gcttgcgtca cgggcttgtt gagacagcag 600 ggcgaacatc ccgagttagg acgcaattgg gtgactagat ttatcaagcg ccgcacagac 660 ctgacgacca agatgggtag acgccaagaa gccaaaaggt ctgactcttt cacgcctaag 720 gcagttcatt ggtactttga tatcagggag ggccagtatg gctggatcaa gcctgaaaac 780 accgtcaacg ttgacgaagg gggtattatg actggtttcg gtaagcatct atctgtatac 840 cttgtcagtg cttgaaattt gaccgactaa tcctttttat ttaggcttag atagcctggt 900 tgttggaagc gcggacccaa ggcggaaggc atttctcaag ggaccacaaa ctcgaaactg 960 gacttcattt atcgaagctg tcactgctga cggccgcgcc ttaatccctg gcataatctt 1020 caaggggaaa gaactgcaga aacagtggtt tgttgaggaa ttcaaggaga tagcagactg 1080 gtattacata acttcgccta acgggtggac tgacgaccac attggcgttg aatggcttga 1140 aagagtctat ctgccccaga caatgccggc cgacgactct gatgcgcgtc tgatcatatt 1200 agatggccat ggaagtcatg caacggtatg ttcttccttt tcctcagctc aaggtcacta 1260 ctaagtaagg gaaggatgaa tggatggcca cgtgcttttt gaataacgtt tattgttgct 1320 atctgccagc acactgctct catgggctcc agccgttgga caatggagta ttcaatgcct 1380 ccaaagccgc atatcgacga gagttggaga atttcgcttc actgactgat tccactccaa 1440 tggacaaggt caatttcatc agggcctacg ctaaggcgcg tcgagttgga atgactgaga 1500 agaacatact ctccggctgg agggttactg ggaattggcc gatctcacgt gccaaagcgc 1560 tgccacaccc agaaatccaa caagataggc caaatggcag cccaagagcg actcccgaac 1620 ccaggccgta ttttgactcg gacgatacac caaagacgag ccgtcaaatt cgtgatcttg 1680 ggctgaacaa aacaccaaag acacgaagac ggtataacgt aatagcaaag ggctttgagg 1740 ctcaacagca gacggtagcg gcgcatactg cgaggattgc tagcctagag gaggaattgg 1800 ctcgcctgaa gagagggaag aagaggaagg cggtgccgaa tcctaacaaa cgttttatga 1860 ctcttggtga gactctagct gctggggaag ccatatccga agaggagact caaaatatgc 1920 ctgttgcggt ggaatgtggc cgttcagggg agccggggtc agaatcggag gctgcgtcgg 1980 tcattgaagt cagagaggaa accatacccc atcaactaac cacgcggtca gggcggctta 2040 tcaaaagacc caggattcaa tagagagatg caactattat tcacaagacg caaattcttg 2100 cacgcgccta tcaatttggc caagttctgt gtaagtaaac atgttgattt ttggtggtgc 2160 tttttttttt tgcctggcga aagggtggtt gtgcatgg 2198 // ID ASCOT1 repbase; DNA; FNG; 409 BP. XX AC AF054897; XX DT 15-SEP-1998 (Rel. 3.08, Created) DT 15-SEP-1998 (Rel. 3.08, Last updated, Version 1) XX DE Ascobolus immersus Ds-like transposon Ascot-1 inserted within b2 DE gene. XX KW hAT; DNA transposon; Transposable Element; ASCOT1. XX OS Ascobolus immersus OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Pezizomycetes; Pezizales; Ascobolaceae; Ascobolus. XX RN [1] RP 1-409 RA Colot V., Haedens V. and Rossignol L.J.; RT "Extensive, non-random diversity of excision footprints generated RT by the Ds-like transposon Ascot-1 suggests new parallels with RT V(D)J recombination."; RL Mol. Cell. Biol0-0 (1998)In press. XX RN [2] RP 1-409 RA Colot V.; RT "ASCOT1."; RL Direct Submission to Repbase Update (20-MAR-1998)Dept. of RL Microbiology, Institut J. Monod, Universities Paris 6-7, 2, Place RL Jussieu, Paris 75251, France. XX DR GenBank; AF054897; Positions 1 409. XX SQ Sequence 409 BP; 108 A; 102 C; 110 G; 89 T; 0 other; cagtgttctc aacagtcagt ccggcccgcc attttgggcg ggctgtagtc cgactgccaa 60 gtagcccaac ctagaaaatg gcctagacac cgtagtccag accagaggta cagactggac 120 tggtctatag acagactgta ggctgtagac catgccaagc ccagtcagaa ccaccttgac 180 actactaaaa atgtcatatt tccctctaaa gaagcctgaa aataggccaa aaatcagcgc 240 caagatgata tgaagcgggc tgtggacggt ctgccttaga atgatggtct acagtccgtc 300 cagaatgtgt aggctggtct gtagaccagt cgagtaccct agggtttggg ctggattgac 360 tgggcggtct gtagcccgtt tacagccgga cggactattg agaacactg 409 // ID YLT1 repbase; DNA; FNG; 9451 BP. XX AC AJ310725; AJ310725.2; GI:13399277; VERSION; XX DT 08-JUL-2003 (Rel. 8.06, Created) DT 08-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Yarrowia lipolytica retrotransposon Ylt1. XX KW Gypsy; LTR Retrotransposon; Transposable Element; YLI310725; YLT1; KW gag protein; pol protein. XX OS Yarrowia lipolytica OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia. XX RN [1] RP 1-9451 RA Senam S.; RT "Ylt1 of the yeast Yarrowia lipolytica - sequencing reveals RT uncommon features of an fungal retrotransposon."; RL Unpublished. XX RN [2] RP 1-9451 RA Barth G.; RT "Direct Submission to GenBank."; RL Direct Submission to Genbank (16-MAR-2001)Barth G., Institute of RL Microbiology, Dresden Technical University, Mommsenstrasse 13, RL Dresden, D-01062, GERMANY. XX DR Genbank; AJ310725; Positions 1 9451. XX SQ Sequence 9451 BP; 1906 A; 2920 C; 2169 G; 2456 T; 0 other; tgtaacactc gctctggaga gttagtcatc cgacagggta actctaatct cccaacacct 60 tattaactct gcgtaactgt aactcttctt gccacgtcga tcttactcaa ttttcctgct 120 catcatctgc tggattgttg tctatcgtct ggctctaata catttattgt ttattgccca 180 aacaactttc attgcacgta agtgaattgt tttataacag cgttcgccaa attgctgcgc 240 catcgtcgtc cggctgtcct accgttaggg gtagtgtgtc tcacactacc gaggttacta 300 gagttgggaa agcgatactg cctcggacac accacctggg tcttacgact gcagagagaa 360 tcggcgttac ctctctcaca aagcccttca gtaccgccgc ctgtcgggaa ccgcgttcag 420 gtggaacagg accacctccc ttgcacttct tggtatatca gtataggctg atgtattcat 480 agtggggttt ttcataataa atttactaac ggcaggcaac attcactcgg cttaaacgca 540 aaacggaccg tcttgatatc ttctgacgca ttgaccaccg agaaatagtg ttagttaccg 600 ggtgagttat tgttcttcta cacagcgacg cccatcgtct agagttgatg tactaactca 660 gatttcacta cctaccctat ccctggtacg cacaaagcac tttattttct cacatctggt 720 ggacgacacc tcgtttttgt ttcgagtgat agcctgccag atttattgtg cctttactgt 780 cgtaccagcg tattttactt ccctttccgt tctttcgttt tcaccatgtc gaaagtaaca 840 aaagacgagt tccaggctct caccgcgaag atggacgcct tgacgctctc ccaccaggag 900 atcaccacta ctctcgctac cgcggttaat accaaggaat tccgctcagc cttagacgag 960 ctcaagcagt caaatgagtc tttcaagaca catcaggctg gggagtttga aaagttgcac 1020 cagttggtgt cggcccagca cgaaaccatc gcgaacctca gcaagcgtgt cgactcaccc 1080 ccgagcacca gctcccttga aggcatttcc cgtattggca aggcctgatt ccgaatttga 1140 acccgacacc ccccagaagg gtaactctgt cctacatggc atggactttg ctgccagtga 1200 cacgggtctg ttgactatcg aaaagaatcc gacgccctca agtccatcat ccggaagagg 1260 tttacccctc cttgtccagc gaagaattcc gaaaacagtt gtacgcttac aaatcttttg 1320 attcccgggt ggctaccttt atcctactcc aggatgacat ccgttggagc accagagctc 1380 gggctttcca cctttgggcg gtgtcaacga taagcagccc ctcttcgatc aacagtacct 1440 ccaactccga agcacctttg aagcagagac tgctgatgaa tcaaccaagc caggtgccca 1500 cgctcgtctg aacaccgctt gcgaacgtct cctccgggac ctttttcgaa agagtgggtt 1560 tgaccacgaa cctgctgtct ccattgctga acaagaggag gaactctgtt tccggttcaa 1620 agattaccac accgctttct ctatcgagac actacgtgcg tacctctctg ctctgagcac 1680 cgctctgacc tcctcacctc tgccggttct ctctcggtgt ctccagttgc agaagctcgc 1740 tccgactcac ctgggcaccg ccctcggacg cgagatccct cgtgacaaca ctcgttggct 1800 gagccttggc atggactccg accctgagcg tgaccatcaa gttgccacgg agctcatcca 1860 gcccctcgcc aagatgatca cccaacatgt ccaacgactt gacgatctca atgatgaggc 1920 tcttctgaga tggcgacagc acacggtatc tttcgaagac gtgtggatgt gggtcgagcc 1980 ttccgcccca cctgagcctt ccacgcctga acctgacaaa gtcgtcgttc acgttgcggg 2040 acgtggtcgt tccaccagga agcctgccga cggccctgtc tcaactgaga ctgtgcagaa 2100 acccacaatc cgtgcctcgg atgcctcaac ctcctgggca gctgacaagg ctccttgtgt 2160 tttctgtggt tccactgccc atgcactggt caactgcgat gactccgaag gcagcccctt 2220 ggtcaaggcc aagtaccttg gcagcttcaa gtctttcacc cgacttggct accagggttt 2280 tgaaaagtat ctatcgcctg ttgatgctga cttccctcta aaacagagcg ctctctacac 2340 ttcctggaag cagaaggaat ggtcgaatcc gcttatggag cctagacttc gaactttcaa 2400 tgcgcagtgg cgtcctgccc tagctggccg cgtaaatgcc gttgaatttg tacacgttga 2460 agacccaggc gggcctttgg ataacagcta tgactctgac tcatctgcgt ctggttatga 2520 cttccaggac cttctccaac ccggcacgtt cagtgtctgt ctaggagggg tgcctcgaga 2580 tcttctgtct gatacgtttt cctcctacga cgagcctcgc actatcattg actccactga 2640 ctcccagctt gagctcacga aagaggcaat ccaccagcac attctccaga tggcaaaaca 2700 gcccacaccc ctccccgtca cttacgcaat tgatgcgcct gtgtcaggct cctacagtgg 2760 caacatgaag cgccttgtgg cacacccagc cttcatgcag ctcgtagctc gcttaactgc 2820 tcccccgggc acgttcaaag cctccacgct tgaagcgggt tttgtaggtg ctgttatggc 2880 cccgtcttcc ccagttgccg gccgtgtcta ctttgttgat gcggtccagc gattgctcaa 2940 caagtacaac gtagtattgc ctacgaagct ttacgagtgt ttcgctacag tccgaaatga 3000 cctcatggag cccgcttacg ccaccgaagg cgatcctcgc cgacagtctc tcaagaccaa 3060 catcaacgcc ttgaaaactg ttgtcgacag caagcaccct gacagaccag tggctccgtt 3120 gccgcgacgc agcccccgtc gtgatgtccg tgaagacatg cccccgcctg ctttgcctca 3180 agcgacaaaa cgtggtgccg cttcttctac ggtatcttcc gctgctcccc ccactgctaa 3240 gcgaaccaag gctgtagcca atccctcctc agtggggccg actgactccg catcctccac 3300 gggcgctgtt gttgacgtcc ccagctctcg tgtggctgtt cacccccccc gtctgggtga 3360 taaccactac gtgagccctg gaacccgtgt caccaaccac atccacgatg cctctgccgt 3420 tgcggagaat gcacccttaa aagattacaa ggatgctctg gaccgcctcc cgtctgacct 3480 agaggactcc aaggctctct tcaccagaga tcatcctcgt tacgacaatg ccttgctgaa 3540 ggctgggcgt ctccctctct tcaagcttga ggccattcat gctctgccgg aatcggaaaa 3600 agcagacttg tttgagcgca tcctcaaggc gtcggatgtt gatggcctcg ttctttttga 3660 gcttctccag gtgtgccctg acctcacaaa gtacatttgg aagaacttcc gtcaccagcg 3720 gcaccggctt gcgggtcctg acatccaagc catcgctctt gagctcgggg acgatctcat 3780 ggagtgtgcc atggatcttg cgctcaacgt gatttcgtcc acaccgtatg agctcaactc 3840 tggcaccttc ggtcgtcttc aggaggtttt caccaccatt gaccgtcagc tgtacgacga 3900 caaagttggt aggccactct cgccccactt caccgacaac attgctcttt tcgaccaaca 3960 gaccagcgcc ctttttgaca gtggctcgtc taacaacgtc atcgacactg atttctttgc 4020 ccttgtactc gcgaaggctg gtgtcacccc tgaccgggtg attgtttttt ctgacggaca 4080 gtcccacgcc acagtcgcaa acggagccaa ggtaaaagtt gatttctggg cgcttctccc 4140 tgtcactttc ctgggtgtcg ttactcttga aacattttgt gtcatgaagt gcagcatgaa 4200 gtgtattctc ggcaccggat acatcagcaa actgcgcatt tcgttcgacc atgatcgtta 4260 ccgtgtcgct tcagtggaga accctggtaa ccctggcgtc cggtgctacc ctagtgacag 4320 accttcagct ggccttgttg ctcaccttgg gttgcttgac cgtcttgtga ggcccggccg 4380 ccggcctgtg cctgcgtttc ctgctgccaa gctgtctcgc caaaacgtca tggcacacgt 4440 tcgacccact ccctcactct gtggtgatgt tgatgaagca acaaatctcc ttgacgcctc 4500 atctctcgga gggcctcagc ctggatctta ctcccaccgt tctgaaacag cggcaggctg 4560 ttttgccata tcctttgctg atgactgtga gtctgccggc ccgccttcga gcgctgccac 4620 cgccattctc aaggctctag cgtccagctc cggccctgat ccccttggca ttccccctcg 4680 tgatgaccct gacgagtctt actcctcatc acctgggcac cacggtgatg tctctggcga 4740 gcccaactcc tcatcacctg ggcacacctc cgctcccgtc gacggtacgc ttggaccttt 4800 actgcctacc gatgcctcat ctgtggatga ctccaacgag ctctgctcct cctcttcagg 4860 ctcggaagcc ccgtcggaag ccccgtccgg agtctcggcc gccttgtcag atgtaggcac 4920 cgttttccag gagagctaca cgtcgtaccg tttccatgac aaccttgcag acaatgctct 4980 tcatgccaga cccccccgac gctcatgctc tcagtggttt tatttcttct gccgacctcg 5040 acagtgtttt ccagtatcca cctcctgcat cgccctgcag ctgctgccag cagcctgtac 5100 gtgagtgtcg tgtacttggt aacactgttt tcatcatggc tgacattggc gactcggcta 5160 ccatcgttca ggttcaaccg gatactgacc tgtccatgcg ccaacagctc taccttgctg 5220 aagttctcag tgatgcccaa gaaatcaccc ctgaagactc tctgcattct ttatctgtct 5280 ccgtcaatgc catgtacaag ccgctacaca agcgttctct gcctctaaat aagcttcgcc 5340 cggacggttc ctttcctgtc ggtgacggct ccaagccttc tccgcgacat cgcaacttct 5400 ctggcgacga gtcttgccaa tttgatgcca aacttgctcc agtccttttc ccggccgagc 5460 ttgctctctg tcgccatcgc atgtcggaca cggagggtgt ctgggctttc aacgaagacc 5520 aggagggtgt cctcagtcac catattgagg agcccaccaa gatctacgtg gaagagggag 5580 gcgttatcaa ctcaaagcac ttccctctcc gcggggctat ggtcggcgct gccaaagaca 5640 tcatcatgaa gggtctcgcc aacggccaga tggagcccag ctcctccccc caccgcaacg 5700 cctggttcct cgtgagcaaa aagagctcgg gataccgttt catccttgac tgccagggcc 5760 tcaacaagat caccttgaga gatgctttcc acccacccaa cgcggacctc ctggctgaga 5820 gtttctgtgg tcgtgctgta acttccctgc ttgacattaa gaatggttac ggtcagaagg 5880 agattgctcc cgagtcccgt gacttgacgg cttttaacac agattttggc tcctatcggt 5940 taacgcgcct gcctcaaggt tggtgcaact ctccagcggt gttccaccgt gccatgctgc 6000 gcgtacttgg gcccctcttt ccggatcagg ctgttgtttt cttggacgat attggcgttc 6060 tcgggcctaa gactgactat ggcggagcca tgcatgacga ctttccgggc tgccgccggt 6120 acatcgtcga acacatggac aacctcatgg ctgtgcttca gaatctctat gaagcgggtc 6180 tgactgtgtc tttcgacaag gccgagcttt tcgtcagtga ggctgagttc ctcggtttcc 6240 tcactacctc tgaaggccgc ttcccgtccc ctggcagttc cgagaagatc gaatctttcg 6300 agttccccac tactgtccgt ggtgtgcgct cttttctcgg tgctgtggtg tattttcgca 6360 tgtggatccc tcatttcagc agtatcgctg cacctctgta cgactgcatc tccgctgcgc 6420 agaaggctgg caaactcaag atcaccaaga ccgaggccac cgagtctgct tttatggcgc 6480 taaaaaaggc tatggtgagc cctgcggttc tgcaccgcta cgaccccacc ttacctattg 6540 tcatcaccac tgatgcgtcc tccctcggat ggggcgcagt aatgtctcac atcgtcagtg 6600 ttggccctcc ggctgcccgt cgccccgtcc gtttcgagag tggtttgtgg aaccccactg 6660 agcgtaccta cgcatccacc aagactgagt gccttgctgt aaaacgtgcc ttggagaagt 6720 gccgtcacta tgtcactggc gttcatttcg tgatcgaaac tgacaaccag gccctggttt 6780 tcctactgca gcaatcccga gttgaactcc ctaacgctat gttcacccgg tggtttggtt 6840 acatcaaaca gtttgattac gaggttcgat ttgttaaagg ccgagacaat ccagtggccg 6900 attggctgag tcgtgagaaa ttttctgact tccgacctgt cgattttcgc cctcctgttg 6960 ctgatacagc tcgacaagct gatgagcttg ctccgcttgt gcccccgact tggtcccctg 7020 tggcctccat cactgtcctg tccattggtc cagagcccgt tttcatccac aaaggcatct 7080 ctctcgatct cattttcacc accattgcct ccggcgatct tgatcgagat ggtgttgaca 7140 ttccgcctag actgcgtcaa atctgctctg agttcttcat ttttgacgac attctcctac 7200 tgatcagctc acctggtctc catcgacgtg ttctcttcac agagaaggag gtgtctgagg 7260 ttctccgagc tacccatgaa caatatggcc accgcggtgc tgctgccatc cttcatgctc 7320 tccgtcgcct ctattactgg ccgggcatgg ctgatcacgt gaagtcccat cgtgcatcat 7380 gcggcacgtg tgcaaaagcc accaaccatg gtcttctcaa ggcgagtctc cacttcgtgg 7440 ttccccgtct catttgggag acagtccagc tggacatcct ctaccttccc gctgttcatg 7500 gtcccaccaa ggagtacccc gatctggctg atcccgccaa ggctctcgct gctcaaacca 7560 ccctcaccga cttcctcccc actgcccctc agttcactga tgtttcctct gccccccgcg 7620 gacggctaaa tgtcactatt gccccctacc agtatgtcct tgtcgctcgt gatgaattct 7680 ctggctggcc tgaggcggtg cccttacgaa gtatcaactc tctctccaca gccgctttct 7740 tctacgattt catcattgct cgttttggcg ttccccgtcg ggtctacact gacggtggta 7800 gtgagttcaa gggtgatttt aagcatctct gcgaagattt ccacatcaag caggttttca 7860 ccactcctgc tcatggtcaa tcgactggca ttgtggaacg cggtcaccaa aacctcctcc 7920 actgcctgcg caaatacggt cgtcagtgga tcttatacct ccacaccgcc ctctgggctg 7980 accggtgcac ccgtcgttca tccacgggta agtcaccttt tgagctgatg tatggtgtct 8040 ctggtgtctt gcctgtcgaa agtcgtttcc tgacctggaa ttacctcagt ggcaagaccg 8100 acctggccca caacgacccc gctcatgctg cttttctgcg caccttgcaa cttgctgctt 8160 ctactttcga agttggctct gctcgtgacc acctgaccct gcaacgccag cgtcaaaagg 8220 cgttctacga caaacatcac aacacagctg atacagatcc cttgggcgta aatgatttcg 8280 tttttgttca cgacctccgt ccccacaaca agctgactcc tcgttggact ggtccctcca 8340 tcgtgaccgc gtgtcaccct gagaccagca cgtacactgt caacgatgtt gacggtgaga 8400 acccgcggcg tatccaccgc aaccgcctca aggttttcca ccccgcttcc atcgttgagt 8460 tccaggaccg catgaaggaa catcagtccc gcgagtctgc tctccctgcc attcctggcc 8520 gcttttctgc ctgttctcca catgttcttc ccccggcttc agtggctact cgttccgtcc 8580 gttctgcagc taccactgcg tcgactagag ttacttctcg gtcgaagctc gctcgtgttg 8640 attctgggct tgctcagggc tccttccttg ctcagggcct ttattcttga ttcttctaac 8700 cagggcttcg ggacgaaacc ccgttagacc tgggcaggtg taacactcgc tctggagagt 8760 tagtcatccg acagggtaac tctaatctcc caacacctta ttaactctgc gtaactgtaa 8820 ctcttcttgc cacgtcgatc ttactcaatt ttcctgctca tcatctgctg gattgttgtc 8880 tatcgtctgg ctctaataca tttattgttt attgcccaaa caactttcat tgcacgtaag 8940 tgaattgttt tataacagcg ttcgccaatt gctgcgccat cgtcgtccgg ctgtcctacc 9000 gttaggggta gtgtgtctca cactaccgag gttactagag ttgggaaagc gatactgcct 9060 cggacacacc acctgggtct tacgactgca gagagaatcg gcgttacctc tctcacaaag 9120 cccttcagta ccgccgcctg tcgggaaccg cgttcaggtg gaacaggacc acctcccttg 9180 cacttcttgg tatatcagta taggctgatg tattcatagt ggggtttttc ataataaatt 9240 tactaacggc aggcaacatt cactcggctt aaacgcaaaa cggaccgtct tgatatcttc 9300 tgacgcattg accaccgaga aatagtgtta gttaccgggt gagttattgt tcttctacac 9360 agcgacgccc atcgtctaga gttgatgtac taactcagat ttcactacct accctatccc 9420 tggtacgcac aaagcacttt attttctcac a 9451 // ID PIF_Harbinger-1_Mlaricis repbase; DNA; FNG; 4890 BP. XX AC . XX DT 16-MAY-2011 (Rel. 16.05, Created) DT 16-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-1_Mlaricis. XX OS Melampsora laricis OC Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; OC Pucciniomycetes; Pucciniales; Melampsoraceae; Melampsora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 4890 BP; 1467 A; 903 C; 1046 G; 1474 T; 0 other; gggcccgttc ggctgatttt cccaaaaatc gttacacaaa aacgaaattt caatctgccc 60 atcaaaaaga gtttttgatg ggcggataga gattgttgtt ttacgttacc gaacagttgt 120 ccaaaaaggt caacgaaaga tcaaaatgat catcattgac cgttcatcat ccatttgact 180 gttcggtaac catgaaatga aatgagtctt tcgatcgaaa cttgaaaatc aatcaatccg 240 tttcaaatct catccatcct ttcatcacgg tcatcaacga ccaaaatcat tgttcgttga 300 ccataatcat tgtcccttct gtatcatcag accacaattc ccgtgattta aaacatcatg 360 gagcaccgtc cacgctcgtc ccttgaatct ctcacacctg agaaacgtgc caaacatcaa 420 aaactgctca aactacagtt tctcaaacag cttcttgctg ttcaacatca acaatttcaa 480 gtgttttgtt actttagcac tggtgtacag gcctgtgcag ctcaaatcct gcctcatctc 540 accaaaactc cgcgtcttac gtccatcctc agcggtcagg cttggattga tgagctcatt 600 gctagtccaa acaacttggt tttctatgat aatcttggaa tgaacaaaca cgtttttttt 660 gaactacgtt cagtacttga agaaactgga attttatatg actcttgttg gatcaccgga 720 actgagaagt tggcaatact tatctataca gtcattaccg gcctgtctaa tcgtaaactc 780 cagaaccgtt ttcaaagatc ggctgatact atttctaagt aattcattta tcattgattt 840 ttttattttt tcgaattttc tcatcactat tctgacatgt cttctttggg ctaggacaat 900 caatcacctt gttaaaggaa tctccaatca aggagaatta cttgccaaat acatcactct 960 tccgaatgcc aacactcctc tccctgatac cttttctgac aatatgaagt tcatgccgta 1020 ttttaaagac tgcattggtg caatcgacgg tacacacatt ccggtcactc caccagcttc 1080 tgaatatatt cctttctcta atcgtaaagg ctatacatct cacaatgtgc ttgctgtgtg 1140 taatttcaat atggagttta tttatctatt agttggagct gaaggaaata tggcagacgg 1200 tgctctttgg actttggctc gaagtcgcga tcttacgatt ccggctggaa agtattatct 1260 tggtgacgct ggcttttctc tcaccaaaga ttgtattgtt ccatatagaa aagtccgtta 1320 tcatttacga gagtgggaaa agaaaggttt caagtgagtt tgtttctttg ttcaactttt 1380 tagtcatcaa tctcatactt gtgtttgtcc ttcttcttct caccactcct atcttttcat 1440 cttagaccaa tgaataaaga agaactattc aatcttcgac acgctagtgc acgtaacgtc 1500 attgagcgta tctttggagt ttgcaagaag cgctttaaga tcatggcgca tgggtgtgaa 1560 tacaccatcg agattcaaat ttcaatggtc acagtgatgt gctttattca caacttcatt 1620 cgtgttaaag atccgaaagg ttcagctgaa gaattccctc aattcggaga aggattcatt 1680 cccgaccctc aagataatac gcaagcgcct actcaagaac aatctggtta tcttcaagaa 1740 tttggtagta atgttgatgg taataactac gctaaacaac tcagagatca aattgcagaa 1800 gacatgtggg tagattatca gaaagagatt gcaagaagag aaaaggtaaa taaaaataac 1860 caaaaacatc ggcaacctct tacgtttcct gatctttaaa gcatatgtag ctattgtgat 1920 tcttatttgg caactctcat taaagtattt ttaattcata catgtatcat ttatcacaag 1980 taccaaaact atttttatct tacatgtatt acaagtctca cttataagta ttttcatttt 2040 gcattcatta atcaaatatt ttgtaactat ttgttttata aatccaagca gtcagtacaa 2100 catttgtatc agcgtgtatt tatacaactg tagttaacaa aattttattt aaaaggttta 2160 aaggttttaa tactaaagat cacacagtca ctttttttta tttaaaggtt taaatactaa 2220 agatcaacag tcactatttt tttatttaaa agttttaata ctaaagatca cacagctact 2280 ataatttcat ttgaaggttt agttcacaca gctaccataa tttcaattgt ggttgttaaa 2340 aaaactttga tattttgata ttaatctaca catagatgat agatgatgaa aagaataatc 2400 atgatcagtc agtgtgtatt ggatgcataa tacaaaatga aactacttac tttttttgtt 2460 gatgatgtat tggagccaac catcactgcc agcattaaag aggttcccag atgggaatat 2520 gggtcctagt gatcagattc ccattctgct actgttacac agttccatga atattgcctg 2580 agtagccatt gtgatatatg tagtcaatat tttgaaatgt gtgtctcaat ctgaacaaag 2640 ttacagcatg tattacacat gatttcctta tctagatgag cagataactg agcggacctg 2700 tatgtagctg atagctaagg atttactcag atgtttgcac atatgtagtg tatgctttat 2760 ggctcagatg tgcagtgcga gatgatttga tgctccattc ttctctcaat gatattccca 2820 gcctaggtct tacttttttt gttgatgatg tattggagcc aaccatcacg ctcacgagct 2880 ggtgtattga gataagtttc agcaatgaga ggcttttcaa tgaataaatc caaggcgata 2940 tagcgttgag tatttttgag ggatgattta taaattaaag acagctgaag cgtgagttga 3000 aggcttgtca gcttgaatcg tgttagctgc attgtcgatg gatgctgaag tggaagcaaa 3060 ggaagtttga atgttgctgc caaactcctt catatcagtt gacatcccat caagaatttg 3120 tatacccgat cgtttctttg atttagtcgg agctcgagca gctaaagcta ccttagactt 3180 gcggtggcgc ttcgctgctg aaggttcatc agaatccgtg tcgtccttgg gtttaaagtt 3240 ggcctcaggt gaatcagatg cgtcagaagg aggtgatttg ggggagggat gatgtccagg 3300 tggtgaagaa gagaagccat gatcgaaagg atcattggct tggtcagcaa aaggggatgg 3360 gaccttggtt ctgccgatga tcgggctagt ggaagttgaa gctacattat cgacaagtga 3420 ggtcaaagct agatcgggtt catcgacaat cgaagtcaaa gctagagcgg gtttaccaac 3480 gatcacacct gtaacgtatt tgcctgtagc tttgtggcct ttgactaaag tcccaatggc 3540 atcgaagagg ggaaatgggc gtcctttcaa ccgagcgtag tctttggcct ttgcactctt 3600 cttcaagaga caaagaagtc agtcactatg aaaagcaaaa gtaaaaaaaa agaaaactta 3660 ctttatcagc gagaattggc gcccagactt catcagatag gtcaatgcag ccatccttcc 3720 atcctgcacc actgagacca ctgaggtcat tgaggtgttt gtaatcggtg taaagttttg 3780 ataactgtaa gaggaacaac atcaataaaa agacaataaa agacgataaa gaaagataga 3840 aaaagataga aaaagataga aaaagaaata cttacagcat accagtgagt cttacaagct 3900 ttcaccgtct tggctccact aacagtaact aaatcactac caggaatctt cttcctttca 3960 gttcctttga gtttctgttc ctttgagttt cttttcgact tcagtccaag tcgcagcttt 4020 gaatccatgc gccgtagtag cgttttgagg tccaatcgct gcgtagtcag ggcctcgatc 4080 aaaatggcgt tgtcgtcatc atcccattgg gccttggttg ggttcgaagc agttggagca 4140 gccaatgagt tggagcagcc aatgagattg aagtactcgg ctctagagtg gtcggtgaat 4200 ggactagagg tcgaggggct ctgggagctc gcggtcgttt ggctttggct ttgggtttgt 4260 cggtggtaga catatcggtc tactgataac acgaaggtga caaaataata cgacggtgat 4320 tgattgaaac tgataagacg aggatgatag aggtagaaga caagagtgat agatggcagt 4380 gatagaactg aagatgatgg ttgaatagcg caaaagcaag gatagaagaa ctgaagatga 4440 tgtttgttca ggaaggcaat ggtggaagac ggcacgatca caataaaaat atggcgtata 4500 ggagataaag gaagctgatc agtgattgaa agggtgaaca atagaaaaag aacgatgacg 4560 gaaaggggtg tgtgaaggaa ataaaaggtc atggaaagag agagagagat gtgtagagag 4620 agagagagag agagagagtc gattggaggt gaagggcgaa gatggaggtg agggtccaaa 4680 aagagttttt gggttgaaaa acagcctcaa ggctgttttt cgatttcaac agtttttgat 4740 gaaatgctgt ttttgtattt gggtcgatga aagttgccga acgccggagt ttttgaccaa 4800 atccaaaaac tctgtttggc caaacagagt ttttggcttt ggtggggttt ttggccaaaa 4860 accgtttttg gtttccagcc gaacgggccc 4890 // ID SKIPPY_LTR repbase; DNA; FNG; 429 BP. XX AC L34658; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Fusarium oxysporum retrotransposon Skippy; gag polyprotein, pol DE polyprotein; LTR. XX KW LTR Retrotransposon; Transposable Element; LTR; KW reverse transcriptase; gag; integrase; retrotransposon; RNaseH; KW POL gene; SKIPPY; SKIPPY_LTR; SKIPPY_I. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-429 RA Anaya N. and Roncero I.M.; RT "Skippy, a retrotransposon from the fungal plant pathogen RT Fusarium oxysporum."; RL Mol. Gen. Genet 249(6), 637-647 (1995). XX DR GenBank; L34658; Positions 191 619. XX CC LTR 1..429 CC CDS 484..3045 CC /gene="gag" CC /codon_start=1 CC CDS 2883..6770 CC /partial CC /gene="pol" CC /codon_start=1 CC /function="protease, reverse transcriptase,RNaseH, CC integrase" CC LTR 7418..7846 CC Target-siteduplications of 5 bp were found. CC The second ORF, 3888 bp in length, has homology to the protease, CC reverse transcriptase. RNase H and integrase domains of CC retroelement CC pol genes in that order. CC Sequence comparisons and the order of the predicted proteins from CC skippy CC indicate that the element is closely related to the Gypsy family CC of CC LTR-retrotransposons. XX SQ Sequence 429 BP; 130 A; 128 C; 72 G; 99 T; 0 other; tgttacgacc ctagcggtta catcacgtgt acctcattat ttttctccaa tcacaggaac 60 ggacccacca cctcacattg gaccgacctt ccaatacttt cggtccaaag ataagataag 120 gaccgacgac tctcgttcaa cggtcctaca gaccgatgca taaacaatat cggtcctgag 180 gggaccgacg ccagcacact atcggtcctc acgaagacct ctagtatata tacactcctt 240 tagcagtaga tagaacttag ctcaccagct atcaataaaa cttctttaca ttgatcaagc 300 ctaacacgca ttgaatctac cattaagaga cgtgacactt cgacaagctc agcatcacgc 360 cctacgccat ctgccaacaa taaacctagc acggcttagt ttatccacag ttgggaacca 420 accgtcaca 429 // ID TY5 repbase; DNA; FNG; 6660 BP. XX AC U19263; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Saccharomyces paradoxus retrotransposon Ty5-6p associated with DE autonomously replicating sequence, complete sequence. XX KW Non-LTR Retrotransposon; Transposable Element; retrotransposon; KW TY5. XX OS Saccharomyces paradoxus OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-6660 RA Zou S., Wright A.D. and Voytas F.D.; RT "The Saccharomyces Ty5 retrotransposon family is associated with RT origins of DNA replication at the telomeres and the silent mating RT locus HMR."; RL Proc. Natl. Acad. Sci. U.S.A 92(3), 920-924 (1995). XX RN [2] RP 1-6660 RA Zou S., Ke N., Kim M.J. and Voytas F.D.; RT "The Saccharomyces retrotransposon Ty5 integrates preferentially RT into regions of silent chromatin at the telomeres and mating RT loci."; RL Genes Dev 10(5), 634-645 (1996). XX RN [3] RP 1-6660 RA Zou S.; RT "TY5."; RL Direct Submission to Genbank (29-DEC-1994)Sige Zou, Zoology & RL Genetics, Iowa State University, 2278 Molecular Biology Building, RL Ames, IA 50011, USA. XX DR GenBank; U19263; Positions 1 6660. XX SQ Sequence 6660 BP; 2119 A; 1444 C; 1272 G; 1825 T; 0 other; gatcttgctt ttgcccatta caacggatct tatgtaggat agggaaggtc acaccgaatt 60 tattctgaca aaacttattg atctcctcat ccttctcaaa ctcttgattt ccaaattgac 120 cgcaaggaaa ggcccgatca tcagaccatg tgatttgtat ttttcgtaca agtactctaa 180 ttccttatat tgtggtgtga atgcaccatg agatgctaca ttaactatca gtaccacttt 240 gttacgcaag gagctaaagg ggaatggatt tccatcttca tctatgggcg caaaagaata 300 aaattcttgc atcgaaactt atatagtgtt ccttggttga tgttccttgt gccgaattac 360 gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta 420 cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg 480 tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata 540 aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg 600 gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg 660 gtaatgtttc aagtacttgt ttcagaattg tttcaagtaa tgttttagac aaggaaaaca 720 tagagcagca aacctccgat ccgacagtac ttaagaaacc atagtttctg tgtacaagag 780 tagtacctat gtaattctta catttacata acatatagaa aggtccaata aacttacaac 840 attatgacat ataagctaga tcgtaattca ctacgtcaac aggttatgag ccctgagagc 900 aatgcttcag agaccataat taatctatct aatcccaaca attataaaca gtggaattac 960 gattagagaa actcgctgtg cacaatacca cctacatgac taaattctgt ctgtacacta 1020 cttactgtat tatataatca ctgtagatgt gttaactgta agcactctct gtagcaaagg 1080 tgagtccgga tttaagcact tatggacgtg gcaaacgagg gatgactcgc ttaccctata 1140 aaaataggga acagaagggg aaaaggaact acggagaagt tccacatgaa gacggtagtg 1200 gggaatgtcg agggggatac tgtcgtatgt tgaatgtgat aacccaaaag catgatatgg 1260 gtaatgtttc agtactgttt cagaattgtt tcagtaatgt tttagacaag gaaaacatag 1320 agcagcaaac ctccgatccg acagtactta agaaaccata gtttctgtgt acaagagtag 1380 tacctatgta attcttacat ttacataaca tatagaaagg tccaataaac ttacaacatt 1440 atgacatata agctagatcg taattcacta cgtcaacagg ttatgagccc tgagagcaat 1500 gcttcagaga ccataattaa tctatctaat cccaacaatt ataaacagtg gctgtacggt 1560 atcgagaccg ctgctgaata tgctaacgaa tatatgaacg aattcgttca taccggagat 1620 atccaatcaa tgaaaaggga ttacaatctc agcgcgaatg atgaaagctt tgtcaaaacc 1680 gtatttaaca gtttcctggt aaagctctac aagaaaacta tcgtgggtga agctgcatgt 1740 gaaatgaact ggatatgtga tgattcactt ggaagggtct ctgcttatga tattttctcg 1800 cacttcgaag aaaactataa tgaagtcact attggatcca ggcttactct tatagaggac 1860 ttaccaaata tatcctccaa gcctgtagat gaaatcgctt cctttttgaa aaccctattc 1920 acaatgcttg aagacaatag cgaagaacag gacaaaaaga aaagacgcga taccaatatc 1980 gcgttgctat taatgacctt cttacccgag ttaaaggaat cattccacga gaaattcggt 2040 gactctaaag ctcttcagct gtcacaagtc attagattct gtaaattaaa ggcgtcatcg 2100 aattcattat cttcagtctc agatacattg gttgcacaag acagaagaag ctatcaaaag 2160 aaaggaaata agggatgtat gatttgtggg gctgatcatc gcttaagcaa ctgttctctg 2220 cttaaaagaa gaataccaga agccagaatc tttaaattat atcctaatga caagacgaat 2280 agatcttcat ctgctagtgt tgcgattcct gactatgaaa cgcaaggcca aacagcagga 2340 cagataacac caaagtcctg gctctgtatg ttatcttcga ccgtcccagc taccaaatcc 2400 tcagattgga tttgtgacac aggatgtact tcacacatgt gccacgaccg ttctatgttc 2460 tcatcattta ctagatcctc taagaaagac tttgtcagag gagtcggcgg ttccataccc 2520 atcatgggct ccgggactgt aaacatcggc actgttcaat taaatgacgt atcctacgtc 2580 cctgatttac cagtcaacct aatatccatt tggaaactat gtgctaaatc caactcttct 2640 gttacgttca caaaagaggg tgtcactgtg aaatcacctg atgacgtgat ttctacggct 2700 gggaagttaa acaattatct gtacattttc gatgatctta cgcccgtaac taccttctct 2760 tcgcaaaatt acttctgctc taaaacattg gattcatcta aaatgataac ttccgcagcg 2820 tttcataccg ttgcagataa aatgttgtcg caacacattt ctcccactgc tctcccggta 2880 aaatggcatg ctcgtatggg ccatcccgga gcagatattt acaattcctt ggctagaact 2940 ctgcgttttc caaaatttaa gacggctgaa tacactattt gtcctacctg ctcactagca 3000 aaaggaatca tcaaaaaggg taaagtctcg ctcaaaaaat atacccaacc tcttcaaatg 3060 gtacaggctg atctctgtgg tgggtttcgc taccaagagt ttcagtcaaa taaatatttt 3120 cttactatcc gtgatgccta tagtcgctac tactctgtaa tacatttaaa atccaaagca 3180 gacgctccga taaaattcat ggaatggatc aacgaaaccg aacaatactt tagctcccgg 3240 ggtggattca aagtcggatc tgttcgtaca gacaatggta cagaattcgt aaataaaaat 3300 cttcatgcgt tttttaaatc taaaggaata gagcatcagt taactattcc atatcatagt 3360 tatcaaaatg gtgctgttga acgtgcacat cgtaccatcg aagaacgcac tcgttgtctc 3420 cttatcgggg ggcgtgttcc tccgtccttg tggtctgaag ctgtttcttg cgcagtctat 3480 ttaatcaata ggtcccctgt agtgtccaaa aataacagta tcccatactg ccggtggttc 3540 aacatccccg caaaagattt cggtatcgca catcttcgaa tttttggatg tacagcatac 3600 gcaaccttac aacctagtct tcgagacggc aaacttgccc caactgtcat atctggtgtt 3660 atggttggct atgactctaa ccatcgagga tacaggattt atcatcccga aactggccgc 3720 atctttgtga gcagtcaagt tcgatttgac gaacacatgt ttcctcttgc tgatacagag 3780 gcagttcacg tctctcacga ctttgccact tccgctattg ggggggtgtc caaatatcct 3840 gaaacagggt caaccgtctc tgctccaaag aacgacggat ctgacttggc aaatttgcca 3900 ataactgttc ccaaaaatgt aaatcaacca gcacataaac ctaataccag taacatctct 3960 tcctctgatg atgatgagga tatttcaatg gaaatcgaaa tggaaaaacc tatccctgag 4020 tgtaaccaag acaacttacc aaactccgga tgtccaccaa caaggataca acattctaac 4080 tttgaatcct taccaaccgt gtctaccgaa gacgaaacta attcttctat ggagaaaact 4140 cctgaaagag ttccagcggc actaacttat cgagaaattc caaaatcatc cgattcagaa 4200 tatattccga catgccgaaa tagaactaga cgtgttaaaa gaactaataa gaaaccaacg 4260 cgatcccgcg aaatagaaat atatgatata tcacgtccaa acgtaatatc gagtgacaac 4320 ttacctgaag ttagaagtgc caagcaaaga aagacggtgt ccaatacaaa tgatactgta 4380 gcaaggacaa atagacttcc aaccgtgcta cgaactctag actcaaacaa cattgacacg 4440 ctgcatgttg ccagtactgg tgaagaagtg tccatcgaaa gactttcaag catggctctt 4500 caggaagcga agaacaattc cgccagaact aatcaagcta attctcttac tgattggttt 4560 ccagtaggcg caatgccgat acctgaccag aggtatctat ccgttcacga tggaacatat 4620 atcagcgact cacaagatgt gggtgatact gacctcactc ctgctgtaac caggctagtt 4680 actgaagaga attcaatcga atctcctcca tcgttggatt catcgcctcc aaatacctca 4740 tttaacgcgg ctctaactgc tattatccat agcacaaaaa aaggaaaccc gaaaacctat 4800 gcccaagcaa tgggaaggcc tgactttcaa gaatggcaca acgcatgcct caaggaactt 4860 tccgcgttca aagatcacaa tacgtacaaa ttggtgtctc ttccaaagca aagaagagct 4920 cttggatcgc gctgggtatt cacaataaaa gactccggga cgtacaaagc tcgccttgtc 4980 gcccaaggac atactcaaaa ggctggtatt gactatcaag aaacttttgc accagtcatt 5040 cgatatgact ctgttagatt atttctggcc cttgctagct gcctcaaact aatagtatat 5100 cagatggacg ttgacaccgc gtttctaaac tcaaaaatga atgagccggt atacgtaaaa 5160 caaccacccg gatttattaa tgaaagtaat cccgactatg tatgggaact atacggcggt 5220 atgtatggac tcaagcaagc cccattacta tggaacgaac atatcaacaa tactcttcaa 5280 aagattggtt ttcgtcgaca tgaaggcgaa catggcttat actttcgttc cacatctgat 5340 ggtcccatct acattgccct atacgtagac gacttacttg ttgctgctcc ctctccgaaa 5400 atatatgaca gggttaagca gaaactaacg aagttatact caatgaagga tctaggtaaa 5460 gttgacaaat tcctcggtct taacattaat caattttcaa atggagacat cactctctca 5520 cttcaagact atattgctaa agctgcatct gaaagcgaaa taaacatatg taagcctaca 5580 cagactccgc tctgtgactc aaagcctctt ttcgaaacaa cttccccgca cctaaaggac 5640 atcactcctt atcagagcat agttggacag cttctctttt gtgcaaatac tggtcgtcct 5700 gacatatctt atccggtctc actactctcc aggtttcttc gcgaacctcg cgcaatccat 5760 ttggagtctg ctcgacgagt tctacggtac ctatatacca ccagaagtat gtgtctcaag 5820 tatcgttctg gatctctgtt ggcactaact gtatattgtg atgcatctca tggagcaatt 5880 cacgatctcc cacactctac tggggggtac gtgactctac ttgctggtgc tccagttacg 5940 tggtcatcaa agaaactcaa gggtgtgatt cctgtatcat ctactgaggc agaatacatt 6000 actgcaagtg aaactgtcat ggagatagaa tggattcaaa acttgtttga acacttaggc 6060 cagccactta tctcatcaac attatacgta gataatgaac ctgctataaa actatctaaa 6120 catcctgtat ttcacacgag aacaaaacac attgccttga gatatcacaa gctaagaagt 6180 gcagtggcag caggcataat taccatagag catgttatta caaagagaca agttgctgac 6240 atatttacaa aaatccttcc agcagaatca ttcaaagcac atagggctgt catggtgagg 6300 gaaccagaaa ctgcaaaata accactctca tgcgtattca gttatggggg gatgttgaat 6360 gtgataaccc aaaagcatga tatgggtaat gtttcagtac tgtttcagaa ttgtttcagt 6420 aatgttttag acaaggaaaa catagagcag caaacctccg atccgacagt acttaagaaa 6480 ccatagtttc tgtgtacaag agtagtacct atgtaattct tacatttaca taacatatag 6540 aaaggtccaa taaacttaca acattatgac atataagcta gatcgtaatt cactacgtca 6600 acatcgtaca cttaaaatat atgtatgtat ctgcactatt tagtcttgtt ttattgggtg 6660 // ID FOT1_FO repbase; DNA; FNG; 1928 BP. XX AC X64799; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE F. oxysporum Fot 1 transposon. XX KW hAT; DNA transposon; Transposable Element; KW transposable element Fot1; FOFOT1; FOT1_FO. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-1928 RA Daboussi J.M., Langin T. and Brygoo Y.; RT "Fot1, a new family of fungal transposable elements."; RL Mol. Gen. Genet 232(1), 12-16 (1992). XX RN [2] RP 1-1928 RA Langin J.T.; RT "FOT1_FO."; RL Direct Submission to Genbank (17-MAY-1992)T.J. Langin, C N R S, RL Lab de Cryptogamie Bat 400, Universite` Paris-Sud, 91405 Orsay RL Cedex, FRANCE. XX DR GenBank; X64799; Positions 1 1928. XX SQ Sequence 1928 BP; 477 A; 493 C; 491 G; 467 T; 0 other; agtcaagcac ccatgtaacc gaccccccct ggtaaccgac ccccacctca gacacgtctt 60 cagacgcgtc cacaccagta tttaaatcca cgataaatcg agttcttctt caatttactt 120 ttttctttct tcatcctctt cttttacttc tacaatgccg gtatactctg cggacgacct 180 agaaaatgcc attgcagact tcaagaatgg ggtctctttg aagaccgccg cgaaaaaaaa 240 cggtctacca cccagcaccc tacgaggtcg cctcactggt gcgcaaagtc gtcaggtcgc 300 tcgccaagaa caactacgcc ttaccaccga tcaagaagat gaccttgagc gctggattct 360 gcgacaggaa aagctcggcc acgctccaac tcacgcgcaa gtgcgaacta tcgtccgcag 420 cgttctcgcg cgtcacgggg atcacgcgcc attaggaagg aagtggacta cgcgattcgt 480 ggagcgccac cctgccttga agacaaagtt gggtcgccgt acagactggg agcgtgtaaa 540 tgctgcgacc ccggcgaata tcaagcgctt gttcgacgtg tatgagaccg tggattggat 600 cccccccgaa cgacggtata acgccgacga gggcggcatt atggaaggcc agggcgttaa 660 cggcctcgtg atcggctcgt cacaggagag ccctaacgcg gtaccagtca aaacagcgac 720 cgtacgtacg tggacttcca ttattgagtg tatatcagcg gtcggggttg tcctccatcc 780 gctcgttata ttcaaagcga aaacgattca agagcaatgg ttccgacgcg aatttttaca 840 gaagcacctt ggttggcaag ttaccttctc aaaaaatggc tggacgagca actctattgc 900 gttagagtgg cttgagaagg tattccttcc ccaaacggct cctgcagatc cagctgatgc 960 ccgtttatta atcgttgacg gccatggctc gcatgcaacc gagcaattca tggccaagtg 1020 ttacctgaac aatgtttatc ttctcttttt accggcacat tgttctcatg tactccagcc 1080 tttagatctc ggttgctttt ctagtctgaa ggcggcgtac cgtactttgg ttggcgagca 1140 taccgctctg acggattcta cccgggttgg gaagcaaagg tttctcgatt tttatgcgag 1200 agcccgcgaa atcggtttcc ggaaggtaaa tattcgatct ggatggcggg cagctggctt 1260 atggcctgtg aatattaaca aaccgctcgc ttcgcgttgg gtgatggtgc tcacgaagtc 1320 ggcactacct ccctcagaaa ctctcgatat cgcaacgcca aagcgtggcg gcgacgttgt 1380 aaagcttttc tctgccaaaa gcagctctcc ttcttcacgg ctctcaattc gaaaagcggc 1440 tgcggcgtta gacaaggttg caatcgagct cgcgatgaaa gaccgcgaaa ttgagcggtt 1500 acgcgctcag cttgaagcgg cgcaaccgaa gaaaaaacgg aaaatcaggc aggatccgaa 1560 cgaatgcttt ataagcctcg cacagatact tgcagaggcc aatcgcgagc ctgatcaacg 1620 tgttattcag tcacagaaag gcgatcttga ttgtattgtg gtggatggga aaagtagctc 1680 tgagtcggag gaagatccag cccctgtgcg ccgatcaacc cgcgtcaggc gcgctacaaa 1740 aatgtatatt agacaggatt tgagtagcga agagagcgat tgagagacct ttaaatacca 1800 ttttctctgc atttttagct atttatttga caaagttgtg ttaaaatatt gtaaatagat 1860 cgatggattt tctgagtctt gcaggtgggt cggttaccag ggggggtcgg ttacatgggt 1920 gcttgact 1928 // ID Harbinger2-1_AAp repbase; DNA; FNG; 3546 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 05-JAN-2011 (Rel. 15.09, Last updated, Version 2) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-1_AAp. XX OS Ascosphaera apis OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; OC Ascosphaera. XX RN [1] RP 1-3546 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1213-1213 (2010). XX DR [1] (Consensus) XX CC Harbinger2-1_AAp belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-1_AAp is a consensus sequence of a family of CC autonomous Harbinger transposons that were active in the CC Ascosphaera apis genome recently. The consensus was derived from CC a few copies ~96% identical to it. The genome does not contain CC any full-size copies of Harbinger2-1_AAp. However, it contains CC ~10 full-size copies of nonautonomous elements that share termini CC with Harbinger2-1_AAp. Most of these copies are flanked by the CC ANT target site duplications. Therefore, the same should apply to CC Harbinger2-1_AAp. This transposon codes for the 370-aa TPase and CC 375 unclassified protein. XX FH Key Location/Qualifiers FT CDS 279..1385 FT /product="Harbinger2-1_AAp_1p" FT /note="Harbinger TPase." FT /translation="MDRLILLHILQENARLNANHDDNPRRQVRRRRQGQRT FT HRGNYPRFKFNLDRLHDQDCKLKFRMYKHEIRAILPYMRLQYIIYRYHNKP FT SQELAFCIFLARLSYSTRLYELPYYFGVSVSYIDAVFNDVLDHFGSIYSEF FT MRWDHSRLNFSQMRQYADAIGEGCIWGFVDGTTQKIARPTVNQRMFYSGHK FT RYHCYKYQAVVTPDGLVSSLAGPVEGVRGDWALFHESKIADDIIEEFDSNG FT VPIGEELCLYGDPAYAMTGVTMSSYRRPPGGELPPEYVEWNRHMSTKRIAV FT EHFFSTVKNRWGLMSLHTINRIGSTPVGNLYRAACFLNNCLTCLRGYNQIS FT LQFQCQPPSLEQYLALVDRADASESS" FT CDS 3153..2032 FT /product="Harbinger2-1_AAp_2p" FT /translation="MSYNTGTLFFANETPFGPVSQPVAVPDSIEIGDEWAD FT TAAPPSPTQSIESESNPRRVSSTPTSSFPPSHDGQSQLSQAEDTMPVNNHV FT TAFRPHGDGTKIPDNEKLSLCQFAIAHAEEYRAKRKCDFNDMLGEFCRREL FT GRHVSRPGDVLVRVVKQVEQREKYLLKSTGVAIPDSDLLQAGASWRDIVKD FT VEKIEEAWQDEVNKKRVSGMRENMVTSQHKRANDEPANERLKRQNTNDELS FT RLAQTMLRSEELKVQRQQVELDSARTQRIQEASLEERMGTLESRIDEKLVR FT MEEMMEKTLSSVETLQYQRRQPLPKLTPQEPRQHVWSASQPVSMAASPSQQ FT PSLRAQATQMNPFGLHPPPRFTYGNSNRWDM" XX SQ Sequence 3546 BP; 917 A; 799 C; 878 G; 952 T; 0 other; aggggttttc tgtagcagac ggtcaaatcg acgacggtca aatctgaacc gtggaacggg 60 tagcctgatg cagtttagtg aattacatca aatacgccgc tagtattctg ggcgttttgt 120 gtgtaaaatt ctcggcatag tggataatgt gcatttcatt aaatcttcta gaagatattt 180 aaatcgacgt cgatcagtcc agatctatag accctgaaga aaacaacaac ctcaattctc 240 aatctaatct cagactgtcg tgtcataata acaacatcat ggatcgtctc attcttttgc 300 acatcttgca agaaaacgcc aggcttaacg caaaccacga cgataaccca cgacgtcagg 360 ttcgtcgtcg tcgacaagga cagcgaacgc atcgaggaaa ttatcctcgc ttcaagttta 420 atcttgatcg actccatgat caagattgca aactcaagtt ccggatgtat aagcatgaga 480 ttagggcgat acttccctac atgcgtctcc aatatataat atataggtac cacaataagc 540 cttctcaaga gcttgcgttt tgcatatttt tggctagatt gtcttattcc acaagactct 600 atgaactgcc atattatttt ggagttagcg tgtcatatat tgatgcagtg ttcaacgacg 660 tgctggatca ttttggcagc atatattcgg agttcatgag gtgggatcac tcgagactta 720 acttcagtca gatgagacaa tatgccgatg caataggcga aggttgtatc tggggtttcg 780 tcgacggtac gactcagaag atagcgaggc cgacggtgaa tcaaaggatg ttttactcgg 840 gtcacaagcg gtatcactgt tataagtacc aagcagtcgt gacccctgac gggctggtgt 900 cgtctttggc agggcctgtc gaaggtgtac gtggtgactg ggctttgttt cacgagtcga 960 aaattgccga cgacatcatc gaagaattcg attctaatgg tgtgcccatt ggtgaagagt 1020 tgtgtctgta tggggatcca gcttatgcca tgacaggggt gacaatgtcg tcttaccgac 1080 gaccacctgg aggagagctt ccacctgaat acgtcgaatg gaaccgtcat atgtcaacaa 1140 aacggatcgc tgtggaacat ttcttctcga cagtgaagaa cagatgggga ttaatgtcgt 1200 tacataccat caatcgaatt gggagcacgc ctgtcggtaa cttatacagg gcagcttgtt 1260 tcctgaacaa ctgtctaact tgtcttcgcg gttataacca aatatcgctc caatttcagt 1320 gtcaaccacc ttcattggaa cagtatttgg cgctcgtgga tcgagctgac gccagcgaga 1380 gctcgacata gagacaggga cagggatagg ggggaagggg agaatagaca cagagtgagg 1440 taaatgatat gggtgagaat tgaacgactt agtcaaattc aagagcttgt atgggagaag 1500 aggaaaggga gagagagagg gatagagaga caattcgctt attctttcta taccctactt 1560 tcttcaatct cctgaattgg acatcaagag cttagtcgag ctctagagag gcaattgagg 1620 atggcaaaca ggccaatttg tttagttaac gcgtcgtctt tagcaaacag cttttattac 1680 ctagagaggc agtgttcaat atcaatagtg tgcgagtgca gagatttcaa tgtgcgagtg 1740 cagagatttc attcatgcag ctggtgatgg tgaagtgaat tgcaattcag gaggttaggg 1800 gttaatcatg tagaattcgg aaactgacca atcagagcgc gtcatttgcg ggctcggcgc 1860 ggaatcaatt aaaatccaac caatcacagc gcgacgaagg acttagagaa aaaaaaagtg 1920 atttcaaaga caataacaca aagctctgaa tttgtctaag tacaactctc acccaactct 1980 ctaaaccacc tcaattcagt caatttgtct ctttttcagc ttcaaatcat gtcccatctg 2040 tttgagttcc catacgtgaa gcgaggaggc gggtgcaagc cgaatgggtt catctgcgtc 2100 gcttgagcac ggagactggg ctgttgagac gggcttgcag ccatcgagac tggctgagaa 2160 gcagaccaaa catgctgacg aggctcttga ggtgtcagtt ttggcagcgg ctggcgtctc 2220 tggtattgca gagtctcaac gctagacaac gtcttctcca tcatctcctc cattcgcacg 2280 agcttctcat cgatccgaga ttcaagagtc cccatcctct cctcgaggga agcctcttga 2340 atcctctgtg ttcgggcaga gtccaattcg acttgttgtc gttggacctt gagctcctcg 2400 gatctcagca ttgtctgagc aaggcggctg agctcgtcgt ttgtattctg tcgtttcaac 2460 ctctcattgg cgggctcatc gttggctctc ttatgttgac tcgtcaccat attctctcgc 2520 atcccactta ctcgtttctt attcacctcg tcttgccatg cctcctctat cttttccacg 2580 tctttaacga tgtccctcca cgacgcccca gcctgcagaa gatcgctgtc tggtattgca 2640 acgccggtgg atttcagaag atacttctca cgttgttcga cctgcttgac cacacgtacc 2700 aaaacgtcac ccgggcgaga gacatgtctc cccagctctc tgcgacagaa ctcacccagc 2760 atatcgttga agtcacattt tctcttcgct cgatactctt cggcgtgggc tatggcaaat 2820 tgacagagac taagcttctc attgtccgga atctttgtac catccccgtg aggcctgaat 2880 gctgtgacat ggttgttgac gggcatggtg tcttcggctt gggagagttg actctgtcca 2940 tcgtgagaag gggggaaaga agacgttggc gtcgacgaga cacgtctggg gtttgactca 3000 gactcaattg actgtgtcgg cgaagggggg gctgcggtgt cagcccattc gtctcctatc 3060 tcaatgctgt cagggactgc gacgggctga gagacaggac cgaagggcgt ctcgttcgcg 3120 aagaatagag tcccggtatt gtacgacatg ttggcgttga attgggttga cttgggggat 3180 ttgaagtcga ctttgagtag gtgataattc actgaataaa gtctctttct gcaaggtatg 3240 ttgttgttgt tgtttcttcg ctccaaattc aattcctttg attaaacaaa tctatatact 3300 tccctactaa ttataacaag ctttcgccta gattacccta cagggctgat ccagactttg 3360 acaaggagtt gacgggtgga aaccaaggct acggtcaact gaccgtagta caactacgat 3420 acagtcgcga cggtcagaac agtggagtag ctgaaaagct caaaaccgag ttaatcggtg 3480 ctctttccta atcgggtaaa aaaaactgga gaccgtcgac ttgaccgtat gctacagaaa 3540 acccct 3546 // ID BOTY_LTR repbase; DNA; FNG; 596 BP. XX AC X81790; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Botryotinia fuckeliana gypsy-type retrotransposon BOTY_LTR, long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; GYPSY superfamily; retrotransposon; KW BOTY_LTR. XX OS Botryotinia fuckeliana OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia. XX RN [1] RP 1-596 RA Diolez A., Marches F., Fortini D. and Brygoo Y.; RT "Boty, a long-terminal-repeat retroelement in the phytopathogenic RT fungus Botrytis cinerea."; RL Appl. Environ. Microbiol 61(1), 103-108 (1995). XX DR Genbank; X81790; Positions 79 694. XX SQ Sequence 596 BP; 183 A; 131 C; 136 G; 146 T; 0 other; tgttacgacg attagtaaca ggctgtagaa tcaccaacgt ataggctata atggtattat 60 aggcctcagc gattcagctg cagtatactg ggggacacta ggcacccaag gaaagcctca 120 ggcatgtata tagtattagt cataggatat cctagaaacg taggacaata ggtcctagga 180 aacaccgaac ataactttgc aaacttttcg cgaagttata ttagtaatgt cccaggggat 240 tggccctagg ataaaagata agctaggaca cgggaagaca cgggaaccgg tatcacgtga 300 tgggccgtcc catcaatccc accgattatt atcaatggga tcatggggat ccatcactcc 360 caccacttcc ggtgagtggg atcgatggga caacagagta cgaaggtcta tataagggaa 420 tgggtttcct tatatgtaga gcttcgtgct caagaacaat cattagtttc attactatag 480 ttacgagaat tgcaatcagt tacaacctta ttgaatccct acttgaagtc tagtctaaac 540 cacctcgaga gatctctaga cacttccacg tgaccctaga ggcagctccc gtaaca 596 // ID EGRT1 repbase; DNA; FNG; 687 BP. XX AC X86077; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE E.graminis mRNA for a retroposon-type repetitive element. XX KW retroposon; Repetitive element; EGRT1. XX OS Blumeria graminis OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Leotiomycetes; Erysiphales; Erysiphaceae; Blumeria. XX RN [1] RP 1-687 RA Wei D.Y., Collinge B.D., Smedegaard-Petersen V. RA and Thordal-Christensen H.; RT "Characterization of the transcript of a new class of RT retroposon-type repetitive element cloned from the powdery mildew RT fungus, Erysiphe graminis."; RL Mol. Gen. Genet 250(4), 477-482 (1996). XX RN [2] RP 1-687 RA Thordal-Christensen H.; RT "EGRT1."; RL Direct Submission to Genbank (04-APR-1995)H. Thordal-Christensen, RL The Royal Veterinary & Agricultural Univ, Section for Plant RL Pathology, Dept of Plant Biology, Thorvaldsensvej 40, DK-1871 RL FrederiksbergCopenhagen, DENMARK. XX DR GenBank; X86077; Positions 1 687. XX CC This sequence is a putative master transcript of EgR1, a CC repetitive CC element from the fungus Erysiphe graminis f.sp. hordei. Sequence CC analysis of the cDNA revealed that the EgR1 is a member of the CC retroposon superfamily with properties in common with SINEs and CC LINEs. CC SINE-like properties include the transcript size (approximately CC 700 CC bp), and the lack of major open reading frames. In contrast, the CC fact CC that the transcript is polyadenylated and is most probably CC transcribed CC by RNA polymerase II, suggests a functional relationship to CC LINEs. CC A constitutively high transcript level is found throughout CC the asexual life cycle of the fungus. Small differences in band CC patterns of Southern blots were observed between two isolates of CC E. CC graminis f.sp. hordei, while the band patterns in an isolate of CC the CC very close relative E. graminis f.sp. tritici in general appear CC dissimilar. This may imply that the element is currently active. CC Recent dispersal is confirmed by the observation that an CC approximately 550 bp internal hinfI fragment is conserved in the CC majority of the copies in all three isolates. CC Approximately 50 copies are present in E. graminis f.sp. hordei. XX SQ Sequence 687 BP; 195 A; 170 C; 156 G; 166 T; 0 other; ctcaacacct gtcagtggtg tcccctacga acctccagct ctcactgtag agtctgcaga 60 gccaagattg agtaacaacc tcctcacttc gatgaggatt cccagtcgcc ttcgcgatct 120 gtatcgtctt catttctcat cacatccccc tatcaccatt atcatgaagc taaccacgat 180 cagatcagac gttagggtcg aagcccttct cgtcaccaac ccttgatcat ggaggaaaag 240 ccatccgatg agtttccgga gcgaacccag cacccgatac agagatggtg gattggatca 300 agatggcctc gaatgctaca aagaagggag atatagatga atatgcgcac ctcatgtggt 360 cccggtgtct aggcctcgcc tggctggggc tgcaggtttt ttgagacttt ttcccgcgca 420 cgcagtttcc attgctacca tttttatttt tttttgggta gaaggttccg tggaaaaggt 480 ggctgaattc cacgggtaaa tactgagctg aatggctatt catcatgggc aatatatcaa 540 tgatcttaca agtaacaaga gaggacagga gcactgtaca aggtgtggcc tgggccagag 600 aggagcccaa tgtgctagat agtcgaagac tcaagtagta caataaaaac ccacccactc 660 attactccaa aaaaaaaaaa aaaaaaa 687 // ID Mariner-2_AN repbase; DNA; FNG; 1876 BP. XX AC . XX DT 09-DEC-2003 (Rel. 8.11, Created) DT 09-DEC-2003 (Rel. 8.11, Last updated, Version 1) XX DE DNA transposon, Mariner superfamily, Tc1 clade - a consensus DE sequence. XX KW DNA transposon; mariner superfamily; Mariner-2_AN; Tc1 clade; KW transposase. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-1876 RA Kapitonov V.V. and Jurka J.; RT "Mariner-2_AN, a family of nonautonomous DNA transposons in the RT Aspergillus nidulans genome."; RL Repbase Reports 3(11), 195-195 (2003). XX DR [1] (Consensus) XX CC DNA transposon. Mariner superfamily. Tc1 clade. CC The consensus sequence was reconstructed based on multiple CC alignment of CC 3 copies. They are 99% identical to the consensus. CC Mariner-2_AN elements are characterized by TA target site CC duplications and CC 37-bp TIRs. CC It encodes a 393-aa Mariner-2_ANp transposase (2 exons, pos. CC 291-1116, 1318-1673). The transposase is closest to mariner/tc1 CC transposases from frog and fly (GenBank, AAP49009.1 CC and CAA82359, respectively). XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="Mariner-2_ANp" FT /translation="MPRGGFHPVELRVQVLTLSAIGFSTEKISKSLNLSPR FT TVQSIVKKGRDRGYRPEVSLRVQLEFVEDRKRSGRPVEITEATQNTVITSV FT TADRAGREKLSEILAYEAGISHSSVLCILHSHGFVIAKPSWKPGLTEAACL FT RRLEFCLAHQHWTLEDWKRVIFTDETGVILGHRRGAIRVWRTVKDSHTRNC FT VRRRWKACSDFMVWGCFSYNKKGPLHIYKPETAAMRKQADIEIEAMNRELE FT PLCREEWELATGLSRVHLRPNRGRVPKWNWNEKNEDSAPAHCHRIQQHVYK FT AEDVQKILDWPGNSPDLNAIEPCWAWMKKRTTSRGAPRDKKTGEAEWRQAW FT ADLPQETIQHWIERLIRHIQIVIELEGGNEYKEGREDRDTRSWAGRRIKG" XX SQ Sequence 1876 BP; 484 A; 418 C; 449 G; 525 T; 0 other; cggaggcgtg caccaaaagt ttttgcgcga cgctagtgtc acgccatgta atactgttac 60 gccctacata acaatttcta tggcaacccc actaccatac atacattaat attttgacat 120 atattgcttc ttcattgttt cagctgcctg cagcctcttg aagctattca cactgctcat 180 atattctatt tgactgatca atttggtgtt ttagcacgct tagcacgctt tttatactaa 240 ttcaacttat cctgccacag ttgctctcct tcctcaacac cagcttcatg atgcctcgcg 300 gcggctttca tccagtagaa ctccgtgtcc aagttcttac tttatcagct atcggattta 360 gtacagagaa gatctcaaaa tctttgaatc tctctcctcg tacggtccag agcatcgtaa 420 agaaaggcag agatcgtggc taccggccgg aagtaagcct gcgcgtgcag cttgaatttg 480 ttgaggatag aaagcgatct ggccggcctg ttgagattac tgaagctact cagaatactg 540 ttattacttc agtaactgca gatcgagcag ggcgcgagaa attatcagaa attcttgctt 600 atgaagctgg tatctcccat tcttctgttc tttgtatcct tcattctcat ggctttgtta 660 ttgcaaaacc ttcctggaag cctggtctga ctgaagctgc ttgtcttagg cgtcttgaat 720 tctgccttgc ccaccaacat tggacattag aagactggaa acgcgtgatc tttaccgacg 780 agactggtgt tattcttggc caccgccgcg gagcaatacg agtgtggagg actgtgaaag 840 attcacatac aaggaattgt gtacggaggc gctggaaggc ctgctctgac ttcatggtat 900 ggggttgctt ctcatataat aagaagggcc ctttacatat ctacaagccg gagactgctg 960 ccatgcggaa gcaggcagat atagagattg aagccatgaa tcgtgagctg gaacctctat 1020 gccgggagga atgggagttg gctacaggtc tttctcgtgt tcatttacgc ccaaatcgcg 1080 gccgtgttcc taaatggaat tggaacgaga agaacggtaa gcttatacgt aaaggtaaag 1140 gggggattga ttggtggaga tatcaaacag tttgttccct tatctctata attctctatt 1200 atagagtagt taagcacgtg ctaattactt attctactgc ctaggaagtc cttaaacctc 1260 ttcttattcc atttgcaaaa gaatgcatga ttgagcgccc aaatactatt gttttagagg 1320 atagcgcgcc tgcccactgt caccgaatcc agcagcatgt ctataaagca gaagacgtgc 1380 aaaagatcct tgactggcct ggcaattcac cggatctcaa cgcaattgag ccgtgctggg 1440 cttggatgaa gaagcgtaca acatcccgcg gtgcgccccg cgataagaag acaggagaag 1500 cagaatggag gcaggcttgg gcggatctcc cacaggagac tatacaacac tggattgagc 1560 gtctaattcg tcatattcag attgttatcg agctagaagg gggtaatgaa tacaaggagg 1620 gccgtgagga tcgcgatacg cgtagttggg caggcaggcg gattaaaggg tgactatcac 1680 cacgtgtaga cctcgctcta cagccaatag aggcccctga atagcttcat ttctcttgtt 1740 tttgatttcg gggtttatgc ggatatagtt agttgtgggt caaaaaacat gttgctatag 1800 taatttgtat gtaagcttgt tacgtcggcg cattaaatta ctagcgtcgc gcaaaaactt 1860 ttggtgcacg cctccg 1876 // ID DNA-2_AN repbase; DNA; FNG; 4506 BP. XX AC . XX DT 09-JAN-2004 (Rel. 9, Created) DT 09-JAN-2004 (Rel. 9, Last updated, Version 1) XX DE Nonautonomous DNA transposon. Putative classification: MuDR DE superfamily - a consensus sequence. XX KW MuDR; DNA transposon; Transposable Element; Nonautonomous; KW DNA-2_AN; nonautonomous DNA transposon; KW putative MuDR superfamily. XX OS Emericella nidulans OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Emericella. XX RN [1] RP 1-4506 RA Kapitonov V.V. and Jurka J.; RT "DNA-2_AN, a family of nonautonomous DNA transposons in the RT Aspergillus nidulans genome."; RL Repbase Reports 3(12), 204-204 (2003). XX DR [1] (Consensus) XX CC Nonautonomous DNA transposon. Putative classification: MuDR CC superfamily. CC 9-bp TSD. XX SQ Sequence 4506 BP; 1319 A; 868 C; 907 G; 1409 T; 3 other; gagtacacag gtgaggcggc gggtaaaata tgtcgggtgt ctcgctaagt tgcacgtgac 60 caaattaaga gtcatctgag ccacagtgtc atttacccgt caattcagaa tttcatctgc 120 ttaccgtaca cattgaagct gcgatcatca ggcctgcaac tagttttcaa tcatttttga 180 ctggaaaaaa ggttcctaca atgtctttga ttggacagaa caaatggttc aaaaaatata 240 aagaagaagt gaaaagtggc aagcttgact tgcctgcttt ggaattcgtg aggcttcatt 300 atcactacat tatcaattaa ctacttgcta agtccttact gcgtcaagga tgcgaatcag 360 aatgttgtca tatactatgg tgaagtcttc tgtcgctacg aagattgtgt gaagaatcgc 420 gtgggtattc aactattttc tagctgtttg tcaactgttc attaactgtt ttacaactac 480 ttagtcgcca ttctctacca ctaataatct ccgaacccat ctccgcgatc agcatgactg 540 taaattagag gagagcaaag ggggtcgcaa tgctcacaag acgattaatc tgggcatacg 600 tgaggatctc caactacctg gcaactgctt tctaactact tagaatggta caagggcctc 660 ttctccgagc aagatgcaca ccggccagtt gcccttgaag ataaacatga agccgttcag 720 cagcaaatta tcagcaatct acaaacccag tccaagtcag acctgtccgc ggccctacct 780 tccctgcccc gaaagaagga tggaacagta agattaatta cctgttagct actttatagc 840 tgcttgctaa ctactcaggt tcatatttct aacatgcgca agaaggtcaa agagctgggc 900 catatcatac cctgcaataa atgtccatct gctaaggact gctgcaagga tcagaatacc 960 tgtgagcact tccgtcattt tgagaatgat ctagaggagg acgaggacna agacaaagaa 1020 tgagacacat cttcgtagta actagaagtt ctgtcaggcg ttatggagct tgaattatca 1080 gaagttctct aataagttac cagttagttt acagctagtt atgaatcaat ttcctgcagt 1140 ttcttccgtc tttccataag ctctaattcc ttctcctcat tttgaagctg caaaacccga 1200 atttcttcct gttctttttt cagcttcatc ttaatttgct ccagctccaa ggcctgccgc 1260 tgttcctcaa aagataatrt atcctctgag ggtcttataa ggctttctga agaagatgac 1320 ctaaccattt ataaggtggt tagcaagtag atactaagtg attgctaagc attggcagag 1380 atattatcca cacaccggat taaccttggt cgtgatcgtg acgtacracc agatcgtgaa 1440 gataaatgtg ctgatgatga ccgacggcgt tttcgagatt ctagaatagt taattgctga 1500 tataatatat tgatagagaa gatacctacc ttcacgagct aaatggcgta ggtaattagc 1560 ttccatattt gctgtcctat acgagtgatg aactccaaag tagtcatggt tttgatactg 1620 aataatatct tgcttgtcaa gctttgcaga gctatattaa tgcaagtagt tagtttgtga 1680 ttaggaagtg gttaggaagt agttagtaag ccaataactt acttctgaac agcctcaatt 1740 aatgaaagct gtttaccacc agcatttgct ttatggtgtg actgctctgc tgaattagta 1800 tgattccgta tagaatcata caaagatgat ggaatcctag agcagttttt gttaagccca 1860 gctttaataa ctgcattctt tttatggaga gcccaattct gaatttttgg gtcctcatat 1920 gctaggataa attgttaata agtacctccc aaatatttac gaaacactta cctgcaagta 1980 agtcacataa ctgatcataa tcctcctctg atttacaatc aaccagactt gccatgcgac 2040 tccacacgcc tgttccttta ttgtcattac caacaatctc agtaatagtc cggaaaaaat 2100 ggacccggca gaaaataatg atgctctgta gttgccataa tagggaacga tggtagggat 2160 caatctcttt aagatatcga gccaggccta gctagttgtt aactacttat caagtaattc 2220 ccaagtggct gattaatgat tgacctacca gcatattgtt tcgtgtccat gtcaacaata 2280 attccagata ttccatttcc atggatagaa ttaaattcca caggttgacc tgttactttc 2340 tcaacaagag taaatactct tttgaataaa agatagtagc ctgtcgtagt ttcttggttc 2400 gtaaacacac acattaaggt gataactaga gtagtttgta agtggcttcc aagtagttgt 2460 taactggcta tggaatacct acttttcccg tgctcatgta ggtaggttgc aaaaactacc 2520 tcattcatgt ttttttgtct tatccttttg taggacatat caacttcaaa tgaggttaac 2580 ttgtttagaa gcatgatctg ctccttatag gcacataata tcataatgcc atcaggatca 2640 cggtatttct cctggatata ttgctagata ttgttataaa gcagctccca actagttata 2700 aaatatttat aatcttacct tcaaggtagg gtttatgtta gatatgtata ccacaccatt 2760 gaaatcctgg ccttcgggat atgtaagtaa acgttgtttc tgtataatgg cagatattct 2820 gtcaatattg gaaagggagg cgtgtatttc agctggtgta gaagcattat actgttgaca 2880 aaaagcctct aactcaggac ttcgtaggaa ttttgctatt gagtagttgg taactagtta 2940 tcgaacagta atcaaatagt attagacaac ttaccaaggg ttaggcttgg attccgcata 3000 tttctaatta ttgattcaat ccctttcaaa atctgctccg gtggcttgtg tggtggtggt 3060 ggaggatgtt gatgaattcc atgtgaagta aagaggatat agggagtttc ctgaatatta 3120 actggtacca atgcagtaaa gattacactg cattttatat gttccagctt gccggggcct 3180 tgaacatggt caaagtctag aagtagttta gaattggttt gccgaatgtt gccaagcagt 3240 tttaaagtag ttgggaacca cttaccacag aatttgcgcc gtgttgttag tggttcaata 3300 acagcacact cctcctgcga cgggagaatg gactcattaa ataaccgctc taagaattca 3360 agatcaattg atgtatggcc tttcagagag ctgtgataat gtttctgtag aggacctggt 3420 gcgctattta tgcagctaat atatggatgg tgcttattat tgatgtcctt ttagcaagtt 3480 agtaggtagt taataagcag tttccaagga cttaccgggt agaaagattt tcgaaataca 3540 ggcgcacagc ttgaaaggtt ttcgatacaa gctttgccac tgttgaagaa tctcttcttc 3600 gagcgataaa gactgaatag aagcaattcc ttgtaagtaa ttggcattta gtttccaggt 3660 agttccaaag tacttacctg aatgcattcc tcttccgaat atcattttca acaaggtcaa 3720 tatctttccg aattgtttgg atttcttgcc atgctttttc atcaaggtat gtatgataaa 3780 gaagtcgaag acttggcttg atatattcac agacaaaagc tcccgaacat ttccaactcc 3840 atttcttaac cttacagttc aagaaactgg aattgatatg tcttagccca tggaggcttg 3900 aacgagaata ctgaatcttc aagcaattaa caaacagttc ttaagcggtt acggaacagt 3960 tctgaagtac ttacgtcttg aactcgttgc tccgcctccg attgtgacat tttatctgct 4020 gcaatgatat acgtatgacc attgatatga gtctttggat actcaggaag gtcatctata 4080 tattcaatat agagcgtctg taaagggtgt aactttgcat cggtaaggtc tgtcaaagtt 4140 gttggttggt cctaagatat atatttagtt atgcagtact taagagctat acagttatat 4200 tttacctcca atacatcctc tcttacctcc tcttcaaacg tatctgatag aatatcatta 4260 atatcttctt cccaatcaac tggatctatg ttgtcatcca ttataaaatc actctagaac 4320 tgattgggaa gtactttgaa agtggtttgt acgttgggag tacgaagaaa taataaagga 4380 gacgaattga aaatgaaatt cggtaattaa ctactgtatt taaaggctca gttgactagt 4440 cgggttgcca agatttggtg gggccatcat ccgagttttc cgatgaatca cttgacctgt 4500 aacctg 4506 //