ID Transib-N1_SP repbase; DNA; SPU; 884 BP. XX AC . XX DT 21-MAR-2005 (Rel. 10.03, Created) DT 04-APR-2005 (Rel. 10.03, Last updated, Version 1) XX DE Transib-N1_SP is a family of nonautonomous DNA transposons - a DE consensus sequence. XX KW Transib; DNA transposon; Transposable Element; Nonautonomous; KW Transib-N1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-884 RA Kapitonov V.V. and Jurka J.; RT "RAG1 core and V(D)J recombination signal sequences were derived RT from Transib transposons."; RL PLoS Biology0-0 (2005). XX DR [1] (Consensus) XX CC Transib-N1_SP is a family of nonautonomous DNA transposons that CC belongs tothe Transib superfamily. The genome harbors ~100 copies CC of Transib-N1_SP that are ~94% identical to the consensus CC sequence. These elements are characterized by 5-bp target site CC duplications and 60-bp terminal inverted repeats (2 mismatches). XX SQ Sequence 884 BP; 270 A; 167 C; 166 G; 279 T; 2 other; cacagtgggc cagggaggaa ccaaagtgcg ccaaaactca tttttggtga tttatttttt 60 tcaatttttt ttcttgccca gttgaaaggt aatacattga ggaatacctc agtaaaatat 120 ttaattccgg tatgcacaat aagggtataa atttactcct tcaaacagca aaatcctaca 180 tattcacagt tttagtgcaa aagtgactta ttttataaat ctttcaattt aacatgaagt 240 ttttaagtta ttgatatgaa attgctctca catattcctg atagttcatt tcgttgcatg 300 aatgggttaa aattaataga aacacaatct tcatgatata ttatagggta attcactgaa 360 aaatggacta attatccatg tttttttata aatccagagg aaatgtttag atctccgcag 420 agttccgctt aaattttaat accaccattt tttctgatgt ctaagcttya agttgatacc 480 aaatttggct gcccgatctt gcccgttgtt atgttagagc cgatttccct tgccacattg 540 ccccgaaaaa tgtggggttt ttttkggtcc gcggctgaat catgaaggat tcgcggtcat 600 aaatcacggc gcgtgggggc gcgtgacact tgttctgaca ccgcggacca aaataaacac 660 attttttcgg ggcaatgttg caaggaaaac ggctctaaca taataacggg cagaatcggg 720 cagccaaatc tggtatcaac ttaaagctta gacatcagag aaaatgttgg taataaaatt 780 taagcggaaa tccctggaaa tccaaacatt tcctctggat ttataaaaaa taaatccccc 840 aaaatgagtt ttggcgcact ttggttcctc cctggcccac tgtg 884 // ID Ingi-1_SPur repbase; DNA; SPU; 3371 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 02-FEB-2010 (Rel. 14.02, Last updated, Version 4) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey1_SP; KW Ingi-1_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3371 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 494-494 (2009). XX RN [2] RP 1-3371 RA Jurka J.; RT "Re-classified as Ingi (together with Jockey2_SP)."; RL Direct Submission to RR (02-FEB-2010). XX RN [3] RP 1-3371 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to RR (02-FEB-2010). XX DR [1] (Consensus) XX CC Originally classified as Jockey. Re-classified as Ingi. The 3' CC termini are composed by (GAA)n microsatellite, as the same as CC Ingi-2_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 373..3246 FT /product="Ingi-1_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains." FT /translation="MAPTDCRRKHASSSGRKVTVMSINTEGFSSAKQQLIG FT KLCKENDCVALCLQETHRGHQHIRPRIPGMKLAIERPHEKYGSAIFVRKDV FT IIDQTSLTEEDNIEVLAVNMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNV FT IIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWK FT KGYNPDLSFTSERISCQTKKRVLEPIPHSQHRPIIVDITAAVVPQRVPLRR FT RFNFRKADWEKFAIDLDEALSDLDPVPANYDQFVRTVQEISRKHIPRGCRE FT NYIPGXSAESALMYKEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQD FT LIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAH FT KKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHF FT GHNTREWLLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISL FT LCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDG FT FEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRR FT FYVELNGKRSRWRKQRNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADD FT LGIAAQSSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSLFHLRNHN FT AGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKQHVQKVKGKVGTRNNLL FT RKLANSSWGANSSTLRSTALALCYSAAEYACPVWERSSHAKKVDAALNDSC FT RCITGCLKPTNVDSLHTLAGIAPSDVRRTVASRTERSRQVEDTRHPLYSHQ FT PAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHHEKLPIPTKEQ FT LPPGHNVTGRRGSPSIGFAQGWGDANTTCINGDTLMTQTPTASVEHPCNLC FT HTY" XX SQ Sequence 3371 BP; 995 A; 871 C; 735 G; 768 T; 2 other; ctagactttt tgtcatcact gcacctaatt ttatataaaa acattcaaaa actttgcact 60 tttgatacga cttaaatttt tcaaatttgt ttttcctcgc gtattcttgg atatttgttt 120 tgaatattta cgcggagaag cacctgttac acatacgcat agcaacagta cagcgcattg 180 cgcgcacttt tcatcaaaac tgagtgtgct gagctgagtg tgacgtcaca atagaagact 240 ctgctgattg tctacttatc taagcgtcca cgtcgcgggg ctggaaactg gacatcgtcc 300 tgagctaatt ctgccaccac catcatccat ccatctcatc tactcttacc agcaagtaaa 360 tactacctaa taatggctcc cactgattgt cgccggaagc atgcatcctc ttcaggacgg 420 aaggtaacag tgatgtccat caacactgag gggttttcat cagcgaaaca acaactcatt 480 ggaaagctct gcaaagagaa cgactgtgta gcattatgtc tacaagagac ccacagaggc 540 caccaacaca ttcgaccgag gattcctgga atgaagttgg ctatagagag gccacatgag 600 aaatatggaa gtgctatctt tgttaggaaa gatgtgatca tcgatcagac ctcactgact 660 gaagaggata acatagaagt ccttgctgtc aacatgggga aactaacagt cacttctgtt 720 tataaaccgc cgggatctac atttgccttt actgaacctc aatctttcga ctatgacctt 780 gtaaatgtta ttattggaga ttttaacagc catagcacct cgtggggata cgaagaaaca 840 aatgaggatg gtgaccttgc tgaggcctgg gcagaggcac atcatcttga cctaatccat 900 gatgctaagc tcccccattc cttcaatagc tgtcgatgga agaaaggtta taatccagac 960 ctatccttta caagtgaacg aatatcatgc caaaccaaga aacgagtcct agagccaata 1020 ccacattcac aacacagacc aataatcgtt gacattactg ctgctgtggt acctcagaga 1080 gttcccctac gacgccgttt caattttcgt aaagctgact gggagaagtt cgccatcgat 1140 ctagatgaag ctctatctga tcttgaccca gtcccggcaa actacgacca attcgtccgg 1200 actgtacagg agatatccag gaagcacatt ccacgtggat gtagggaaaa ctacatacct 1260 ggawtatcag ctgaaagtgc cttgatgtac aaggagtaca taaaactcta cgaggaagac 1320 cccttttcag aggaaacctt gagtgcaggt gagctcctca tggcagcaat atcagaggaa 1380 cggaggaagt cctggcaaga tctcattgag ggtgttgata tgacgcacaa cagtaagaga 1440 gcttggtcta ccattaagaa aatcagcaac gatcccaaga agtctacacc ccattctaat 1500 gttactgcag atcaggttgc ccaccaactt ctcctgaatg gcaaatcggc acacaagaaa 1560 cgccacaaaa ggaatccttg gccacaggtt gacacagaat ctacctggta ctttaacaac 1620 ttggaactcc agacggctat cgactccctt aagaatggca aggcagctgg tcttgatgac 1680 atacgtacag aacagatcaa acattttggg cacaatacac gggagtggct actctctctg 1740 ttcgacaact gcgtaaccct ctcccagctt cctaaaatct ggcggaaagc ccgtgtgatt 1800 gctatcctca agccagggaa agaccctaac gaagcaaaga gctacagacc aatctccctg 1860 ttgtgccacc tcttcaagct ctttgagcgc ctcatcctga acagactggg gccagtcaca 1920 gaacaacacc tgataccaga gcaagcaggt ttccggcctg gaagatcgtg cactggccaa 1980 gtgctaaatc taacccagca catcgaggat ggtttcgaga agaatgaacc gactggagtt 2040 gtgttcgtcg acctgacagc tgcctacgac actgtgaacc accgtatact tctcgacaag 2100 ctctatacca tgacaaagga ctcccatctg actaagctta tccaaatgct cctggaaaat 2160 agacgctttt atgttgagct caacgggaag cgcagcagat ggaggaaaca aaggaatggt 2220 ctacctcagg gcagtgttct tgctcctgtg ctctttaatg tctacaccaa cgaccagcca 2280 gtgtacccag ggacaagaag cttcatctat gctgatgacc ttggcatagc agcccagagt 2340 tctcacatag acaagataga agccactctt tcatcagccc tagacaacct gacagactac 2400 tacaacaaca accatctgaa ggctaaccct gccaagaccc aggttagctt gttccatctc 2460 cgcaaccaca atgctgggag gaagctgtcc ctgaaatgga acgatgtctc attgaaacac 2520 tgcgatcacc ctgtctacct tggaatcact cttgaccgaa ccctttcata caaacagcat 2580 gttcaaaagg tgaagggtaa agtcgggaca aggaacaacc tcctacgcaa actggcaaac 2640 tcgtcttggg gtgccaattc ctccacgctg aggtcaactg ctcttgcgtt gtgctactct 2700 gcagcagaat atgcctgccc tgtatgggaa agatcatccc atgcaaagaa agttgatgca 2760 gcactcaacg acagctgcag atgcatcact ggctgcctca agcccacgaa tgtggacagc 2820 ttgcacaccc tggccggcat tgctccatcc gatgtccgca gaacagttgc aagtaggact 2880 gaacgcagca gacaagttga ggacacccgc catccccttt actcccatca accggcccct 2940 acccgcctga agtcaaggaa gagcttcctt catacagtcc agccactgtc acaacctcct 3000 cattcaacca gagtgatctt gtgggaagag aaacgttgtg aaaaccacca ccatgaaaag 3060 ctaccaatcc cgaccaagga acagctgcca cctggccata atgtgactgg aagacgtgga 3120 agtccctcaa taggcttcgc acaggggtgg ggcgatgcaa atacaacatg cataaatggg 3180 gatacactga tgacacagac accgactgcg agtgtggaac atccgtgcaa tctatgtcac 3240 acttattaag atgcccactc ctagwtgacc aatgctgcct ggaagaccta gtggcagcaa 3300 atgagaaggc tcttcagtgt gcaaaggcct ggcagagcat ttgagatcag atgatggaca 3360 cgaaagaaga a 3371 // ID SPRP2 repbase; DNA; SPU; 247 BP. XX AC K01794; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus histone H1-H4 spacer repeat. XX KW Repetitive sequence; SPRP2. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-247 RA Vitelli L. and Weinberg S.E.; RT "An inverted sea urchin histone gene sequence with breakpoints RT between TATA boxes and mRNA cap sites."; RL Nucleic Acids Res 11, 2135-2153 (1983). XX DR GenBank; K01794; Positions 247 1. XX SQ Sequence 247 BP; 50 A; 64 C; 71 G; 62 T; 0 other; cggacgaccc gggactgtct cctcccacgt acgcaacaat gccttatatt gatggcgttg 60 ccgagcctca accggattgc agcgagtatt gttacaccat tgcggacttg ggtgacgaga 120 ttcggcatca ttcggtatgc gggactggag tgcggagact ccccattcga gtgcgccccc 180 tcgtggcgag tattcgctag cattattaca tgcatttatg tagagaggcc tgtgttgaat 240 gctcgag 247 // ID DIRS-1_SP repbase; DNA; SPU; 5973 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 09-MAR-2009 (Rel. 14.02, Last updated, Version 1) XX DE DIRS-like LTR retrotransposon family - a consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; Nonautonomous; KW reverse transcriptase RNase H; phage integrase; DIRS-1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-5973 RA Jurka J.; RT "Families of DIRS-like retrotransposons from sea urchin."; RL Repbase Reports 9(2), 490-490 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 2487..3470 FT /product="DIRS-1_SP_2p" FT /translation="MPKAKQKSKRTTVDQAGSSRPRRTATATAPPSQPGSE FT PLVQAPQPNAGVEQRGPGPSASEYDSWPLVCAGNETLNLNVGPEQAQQGGL FT MINDPPVLATPREALGSAVPRALRDRIWKGEFVDLGALLKNVPVPDGSAPM FT VIALSGSTLQVQPQRGVPRITSIEQWTSAFLVFASIYTEKHVVRALEMYKY FT MDTVRTAARFGGNGWHTYDLQFRLRQAREPTRSWAVIDSELWLMTATAPCT FT QSTPAYYGNAFREGSPYGQTNQWEGNAGRRQTTGRPFGRESRGLRYCFNFN FT SGRCVKQDCVYAHRCQQCGQTSHGRSQCTLGKRTL*" FT CDS 3235..5076 FT /product="DIRS-1_SP_1p" FT /translation="MHFVKAAPTARQINGKAMRAADRPQGVLSGVNRGACA FT TVLTSIVAGASSKTVCTPTDASSAARPRTGDPNVRLGKERFRSLAPTPIRL FT LRMIPFLKSYTKTGDGQFLHEGFAKGFPLGYKGPRVTVKAINLKSARERED FT VLLVKLKHEVELGRIVGPFESPPFENFRCSPVGLVLKKTPGEFRMIQHLSA FT PRNNSVNGQIDPKDCSVAYCTLDDAVLSVQAFGGGACMGKADIKSAFRLLP FT VHPDDFDLLGICVKGKFYYDRCMPMGCSIACSTFEKFSTFLEYCCRKVADS FT CNTLHYLDDFFFVGASESECKHLLRSFESMCERFGVPIAAEKTEGPVTKIT FT FLGLEIDSVVGQVRVPQDKLLSLQALISTVLGKEKVTLRTLQSVIGSLNFV FT CRAVAPGRAFLRRLIDLTIGVKERHHMIRISLGAREDLKAWLHFLLAFNGR FT VLFCERHTWSTPDLQFYSDSSGSIGFGVYFNGKWTQGRWPEGVCTPKYSIA FT FLELFPIVVGLQLWGGDLGNKRVLFWSDNQTVVSVVNAQTSKCPMIMFLVR FT QLVLICLRHNIRFRARYVPGERNNIADALSRFQASRFRQLAPGADHEATPL FT PPHLWKIFTKSGQTC*" XX SQ Sequence 5973 BP; 1460 A; 1213 C; 1491 G; 1809 T; 0 other; tatatatacc cggattttga tgctgtgtat ttcagttaat gaaaattaca aagctttctc 60 atgagcttgg tcacagttgg gaccatgaac gcgtttttca ttgaagactg cttttggttt 120 aagatgaaag gtagttatct cgttattttg attaattggt tgatttagct taagctttga 180 aatttcaaaa cgtgggtatt gaaaagatat ggtaattggt tgaatgcatt atgttcaagt 240 tcaagttcgc gtactttgta catatatata tatatatata gccgttttgt ggctttgttt 300 tatttaccga ttattgcaga gtgttttcat gagcttagtc acagtcgtgg ccataaatgt 360 gcttttaact tatagttttt ggttggaaac gaaaggtaca tgtagttatc acgttatttt 420 ggctaattgg ttggattcaa tatgttcacg ttcaagtttg tgtacttagt tcatatatat 480 atatatagcc gttcgtggct ttgttttact atacttactg ttattgcgga gtgctttcat 540 gagcatagtc acagtcgagg tcattaaggt gtttaattta ttgtttttgg ttgaaaacga 600 aaggtggtta tcacgttatt ttggttagtt ggttgattta gctcaagctt cgaaatcgca 660 caacgttggt attgaaatga aattaaggta attggttgaa ttcaataggt tcaagttcgt 720 gttcgcgttt aaaacgcgta gtgaaacgaa agtaacccat tagaatttag ggtgaaatta 780 ctatgtcagt ttatatgcgt acattacgcg ataaaaatat atacgctcag tggcggcggg 840 cggtgcccgt gtggcggaaa ttggcatttt tgcctcttcg catatatata tgtgtatgtg 900 tatatatgtt aatatataca tataaaggtt attatgtgta ttacacactg ctgcagaata 960 ccccatggga aggttgtgtt ttggagaata tgatttggat tattttaatt ggccattgta 1020 tcttgcagag ctcaatattt attggtttcc ggtaagggcc ccgatgataa caggtatcct 1080 ggtttattta taacatgtac ccgcctgtaa agtaggcatc tgttcgcctg tttaatgcag 1140 tggaaccgtg tgtcttcttt gtatgcagag gggtgttata cgtatagccc actttgtggt 1200 actcacagtt aaattccata tgagaaggta aactctgttc gccctcttta atgaggaaac 1260 agtgtcgcct ttttacgggc tgtggggggt tgtacacaag ttctcgtctg ttgacggccc 1320 tgatgcagag agtactttgg attggacatg ccggctccat ccagtttttt cagagctcaa 1380 tatttattgg tttccggtaa gggccccgat gataacaggt atcctgttta tttataacat 1440 gtacccgcct gtaaagtagg catctgttcg cctgtttaat gcagtggaac cgtgtgtctt 1500 ctttgtatgc agaggggtgt tatacgtaca gcccactttg tggtactcac agttaaattc 1560 catatgagaa ggtaaactct gtttgccctc tttaatgagg aaacagtgtc gcctttttac 1620 gggctgtggg gggttgtaca caagttctcg tctgttgacg gccctgatgc agagagtact 1680 atggattgga catgccggct ccatccagtt tttcatgtgc agatacttgt ataaattgat 1740 caaaagattc gaaaatgata cccgggtcct tccctggggc agattggagc agtgtaacgt 1800 ttaagtaaac gtattttata ttcagttggg aaagtttgtg tcgtagttgt tattattgtc 1860 atgatgttga tattcagggt aacaagattc catcctctat taaatctcaa gtacccgcaa 1920 aaacgcatcc cgtttcattt gttactgtga atgtaagaaa ttttatcgaa cgaagggcga 1980 tataaatggt ttacattcat cagtgacatc acgagttcgc ggcggcttct cttctgtgat 2040 gacccttagc ggcatcttga tagaaaacaa taacatgccg acaccctttg agtcagccgc 2100 gcggcttctt tcatgtacgc gtatctataa aaggaatgtg cgcaatgtat gtttcgaatt 2160 tatatatgga attattttag ccgggatata ttggttctca cggtgttggc gtgagaatcc 2220 tcattcacct tgcagatttt ttagaggatg gtcatagaca ttattcggtg gcaaattaat 2280 ttattggact ttattgagga tatatggtag tcgatgctac tatactttga ttccacgtcg 2340 gttttttgtt ttacttcaac ttagttcttc ggaataatta tatacgacga cggaatttgg 2400 aattttgtac atttggagtt cagcattggt taactttata ttaacttcat aacttcgtta 2460 attgtatcat cgcgtctgga attataatgc cgaaggctaa gcagaagtcc aagcggacaa 2520 ctgtcgacca agccgggtcc tcacgtccac ggagaactgc aactgcaaca gctccgcctt 2580 cccagcccgg atcagagcct ctcgtccagg caccgcagcc gaacgccgga gtggagcagc 2640 ggggacctgg tccatccgca agtgagtacg attcttggcc gcttgtttgc gcgggtaatg 2700 agacattaaa cttaaatgtg ggacccgagc aggcgcagca gggggggctt atgatcaatg 2760 accctcccgt gttggcaact cctcgggagg cgctggggtc agctgttcct cgcgcattgc 2820 gggatagaat ctggaaaggc gagtttgttg atctaggggc cttgctaaaa aatgtccccg 2880 ttccagacgg cagtgcaccc atggttattg cactgtcggg gtcgacattg caggtacaac 2940 cgcagcgagg ggtgccgcga ataacctcaa tagagcaatg gaccagcgca tttctggtat 3000 ttgcctctat atacaccgag aagcatgtag ttcgggcctt agagatgtat aagtatatgg 3060 acaccgtccg gacggcggct agatttggcg gcaacggctg gcacacatac gatttgcagt 3120 ttaggctgag gcaagcaaga gaacccacta gatcatgggc tgtcattgat agtgaattgt 3180 ggctcatgac tgccacagca ccatgcacgc aatcaacccc cgcctactac gggaatgcat 3240 ttcgtgaagg cagcccctac ggccagacaa atcaatggga aggcaatgcg ggccgcagac 3300 agaccacagg gcgtcctttc gggcgtgaat cgaggggctt gcgctactgt tttaacttca 3360 atagtggccg gtgcgtcaag caagactgtg tgtacgccca ccgatgccag cagtgcggcc 3420 agacctcgca cgggagatcc caatgtacgc ttgggaaaag aacgctttag atccctcgca 3480 ccaactccga ttaggctgct ccgtatgatc ccctttctga aatcatacac taagacgggc 3540 gatggacaat ttttacatga agggtttgca aagggattcc ccttaggata caagggtcct 3600 agagtcacgg taaaagcaat taatttgaaa tcagcacggg aaagggaaga tgttttgttg 3660 gttaaattga agcatgaagt agagctaggg cggattgtcg ggccatttga atcacccccc 3720 tttgaaaatt tccgttgctc tcctgtcggg ctagttctaa aaaagacccc gggggagttt 3780 cgaatgatac aacatctttc cgcgcctagg aataattcgg tcaatggaca gatagatcca 3840 aaggattgct cagttgcata ttgtacactc gatgacgcag tcttgtcagt gcaagcattt 3900 ggcgggggcg catgcatggg gaaggctgac attaagtcag cctttcgcct gttgcccgtt 3960 cacccggatg attttgacct gttaggtatt tgcgtcaagg gaaagttcta ctatgataga 4020 tgcatgccca tggggtgttc gattgcatgt tcaacattcg aaaagttcag tacatttctt 4080 gaatattgct gtcgcaaggt agccgactct tgcaatactc tgcactattt ggatgatttc 4140 tttttcgtag gggcatctga gtccgaatgc aaacatttgc tacgcagttt cgagagcatg 4200 tgtgaacggt tcggggtacc cattgccgca gaaaagacag aaggtccagt cacaaagatc 4260 acttttctgg gtttggagat agactcagtg gttggtcaag ttcgagtccc gcaagacaaa 4320 ctcttgtcac ttcaggcgtt aattagcaca gtcttaggta aagaaaaggt gacgctaaga 4380 acattgcagt cagtcatagg cagcctgaac tttgtttgcc gggcggttgc tccagggcga 4440 gcctttctgc ggcggctaat tgatttgaca ataggcgtta aagagcgcca tcatatgatt 4500 cggatttcgt taggagcgcg ggaggactta aaggcatggc tacattttct cttggcattc 4560 aatggtagag tattattttg cgaacgccat acttggagca cacctgactt gcaattttat 4620 tcggattcat ctgggagtat cggttttggg gtctatttca atggcaagtg gacacagggc 4680 agatggccgg agggggtctg cacccctaag tattccattg cttttctcga attgttcccc 4740 atcgtagtgg gtttgcaatt atggggtggc gacctgggca acaagagagt attgttttgg 4800 tcggataacc aaactgtggt ctcagttgta aatgcccaga cttctaagtg tcctatgatc 4860 atgttcctag ttcgtcaatt agtattgatc tgtctgcgcc acaacattag gtttagagct 4920 cgctatgttc caggggagag aaataacatt gctgatgctc tttctcgttt tcaggcctcc 4980 cgcttccgtc agcttgctcc aggggcagat cacgaggcaa cgcccctgcc cccccatctg 5040 tggaagatct tcaccaagag tggtcagact tgttagtttc atctagggcc cgtaataccc 5100 acgcagtgta tcagcaggcg tgggaatcat ttcgtaagtt cttgttgtta tattttccag 5160 ccagcaatac accgtactct tacgaacaga tggcgctgtt tatttcttac ctgtcactgc 5220 agggatatgc agcttcaact atagttacct acatatctgg catatcttcc cgtttgcaga 5280 cggaagggct tttagacgtg actaaacact ttgtcgtaag tcgtttgtta gtcggttgcc 5340 gccgtcggca ttctcgaacg gatgcgcgtt gtccgataac tatgccaatt ctcaagaaac 5400 tgttgtctgc gcttcccgct gtgtgtaatt cttatgatgc tatcctgttc aaggcatgtt 5460 tcttagcagc attttggggt tttttgcgga ttggagagtt tactgctaat tctcggtcaa 5520 cgtctgacgt cagtctggaa ggtcgggatg ttattgtaga tggttcggca ccaaggcggc 5580 acgttaggct gcacattcga tcttctaaaa cggaccaaca gggacaaggt tgttatatcc 5640 taatgccaga agctgacggt tgtccattgt gccccgtgca ggccgttcta gactatatgg 5700 ccatcaggcc gcaatccagc ggcgcctttt tctgtcggtt tgatgggaat catgtgacta 5760 ggcgggaatt tacggcggtt ttaaggaagt gtttgtcctt tttggatctg ccagtagcac 5820 gatttacatc acattctttc agaataggtg cggccacatc agctgctatg gccggttttg 5880 actcaggaga aattcagaac atggggcgct ggtcctcgga cgcgcataag agatatgtgc 5940 gtatcaatat gctgcctatt gcataattca tga 5973 // ID U1_LV repbase; DNA; SPU; 1398 BP. XX AC X01749; XX DT 28-SEP-1995 (Rel. 1, Created) DT 25-MAR-1997 (Rel. 3, Last updated, Version 2) XX DE L.variegatus repeat unit with gene for small nuclear U1 RNA. XX KW Repetitive sequence; LVU1; U1_LV. XX OS Lytechinus variegatus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; OC Toxopneustidae; Lytechinus. XX RN [1] RP 1-1398 RA Brown T.D., Morris F.G., Chodchoy N., Sprecher C. RA and Marzluff F.W.; RT "Structure of the sea urchin U1 RNA repeat."; RL Nucleic Acids Res 13, 537-556 (1985). XX DR GenBank; X01749; Positions 1 1398. XX SQ Sequence 1398 BP; 429 A; 275 C; 261 G; 433 T; 0 other; aagctttcgg gtctactacc aactagagcc catggaacga gatattaaag agagcaaagt 60 ataattttgc ccaagtaaga cgacgaccga taaaagaaag gttgacccga taacaggatg 120 cgagtaagct gacgcttatg tcattataat ctgcaacgtc agtaaagtta ttgtgaagtt 180 catgaatatt cacatcctta cttcttcaca tcttacgtgc aattttgtac ttgttattac 240 gtttaaatta tagaattaca tggatacgtc attaatgttg ctccagagag gggcacagag 300 atttgaggtt tctttctctc aaaacttgcc aaaattgtac aaattcataa aatcatgtga 360 ctgttttctc tttgtagtgt gagatgtttc actgctttct atcgcagata agatttgatc 420 aagtacggcg accgatggat ggggagcata cttacctggc gcaggggtcg cattgatcaa 480 gaaggatgca cccccagggc gaggcttgcc attgcactcc ggcttgctga accttgcgat 540 tcccccaaac gtggggaact cgggcgtaca atttatggta gcggagatct gcgttcgcgc 600 tatctcctac aattcaacta atgcaaagaa agaaaataaa agctccccga aaaactctga 660 tggtgacatg aatggactaa tcccttccaa tttttgggga atttcaacct tatcaggttt 720 ttcaaaccac tagtttcttt attacttaag gggacatgat tggcattcct ttcaataaaa 780 gctcgggttt aaatccgtgt gacaaaaata gcatactact ttaacatctg cttcatctca 840 actgcgaaat gtatgtcgaa ataaactttg ctaagttttg aaagattcta atgagattta 900 aaaaaaatga ttttccggca gattggctcg ctcattttac tcggtcgcaa gtttccgata 960 aaaaccccct ccaaatagtt ttctcattga aacaacgtca tccaaaatac gtttcaagtt 1020 aatccttcca atcaatacat attgtaactg ggtatatttt aaaacctatt ggcccatcgt 1080 tgtttctttt ccatatgaac attagttagt ggttaaaagt tgcatcatga ttcgtaacta 1140 aaaaaaaata aatgacccgt ttaaagcgtc agcttggacc aaccaacatt ttcgtcacca 1200 atctataaaa aggtaaaata tccaggtgca tggtcatttc ccaggggtgg agtccaggtt 1260 attgactact catttaatgt gtatgaacta gtttcgattt tgtggtgcat tttctcttta 1320 tcccttgata tggaaataaa caatcatttt aactttatcg agatattaag cctcacattt 1380 cattctaaaa tgagacga 1398 // ID Crypton-1_SP repbase; DNA; SPU; 2108 BP. XX AC . XX DT 11-MAR-2008 (Rel. 13.03, Created) DT 12-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE Putative Crypton-type transposon. XX KW Crypton; DNA transposon; Transposable Element; Nonautonomous; KW Crypton-1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-2108 RA Jurka J. and Kapitonov V.V.; RT "First Cryptons from invertebrates."; RL Repbase Reports 8(3), 233-233 (2008). XX DR [1] (Consensus) XX CC This element may represent a Crypton-like DNA transposon. Its CC closest currently known relative is Crypton-1_NV. This element is CC present in ~100 copies in the sea urchin genome. Its termini may CC be incomplete and, unlike in Crypton1_NV, no clear TIRs were CC identified. XX FH Key Location/Qualifiers FT CDS 546..1898 FT /product="DIRS-1N_SP_1p" FT /translation="MAELETLPRFQLLDDDQMRDLIDSADSKNTKNSVKFS FT MKIFEDFLQVINTDLDSVNKLSNSELDNVLQKFYAGARRKNGSYYMKKSML FT AIRFGLQRHFLNCNKIDIIKHEDFSNSTRVFKCFSAMLKQEGKGVVTHKPA FT ISAEDMDKIQGSLDLDDPVGLQDKVFMDVMLYFCNRGRENLREMTLDSFDI FT CDEGGKCSITLKDTLTKNNRADKLEKSQGGVMIPTNGPRCPVASFLRYKDK FT LNPQCKSFWQRPANAQAKRELKSNPSSSDQWYCNAPLGKNSIGDKMKTISS FT RAGTKAYTNHCLRATSISTLQNAGFRDREIMSVSGHKAETSLKHYAMTSST FT AKENMSHAIAAAVDPKSVPSSSNIGHGIAAAVDPKSVPSSSTSTGGQRSES FT QELRELNDIFNEITNNPENFPRTCNITTSSHAHVSTSQQVQAPTYHFNNCT FT VNIFNK" XX SQ Sequence 2108 BP; 651 A; 448 C; 438 G; 570 T; 1 other; tttatatacc tcacttaaga aatccagcca tctgattggt cgaaattgca ttcataaact 60 ttaactgttc ctgtaaaatt cccggtaacc atgcttaaaa cagttctaaa atcccaataa 120 ccatggttac cgggaaaata gttcagtctc catggttacc ccataggttt acatgttaaa 180 aaatggtttg agcgatcgag gataccgtac gtgtgcgaag aattggtcgc tatattttac 240 caattttgta actcacccca cgggacatct cgccccagca tcaaagactg ggtcgaaatg 300 tcccgacacg attcatcgat cgagagatac caatgtgtat atgtttgtgc tcattgtaca 360 ttttagacga tatggctgat atttgttcac attctttcgt cctggccgtt aattagcaga 420 ctactggtat ctctcgatcg ataaatcatg tcgggatatc tcgctggggc gagatgtccc 480 gtggggcgag ttagcccgac tccctagtag ctgccagcgc agacgaccga ctgtactagg 540 ccaaaatggc tgaattagaa acgctcccaa gatttcagct tcttgatgat gatcaaatga 600 gagacttgat tgattctgct gacagcaaga acacgaaaaa ttccgttaaa ttctccatga 660 aaatattcga agacttcctg caagttatca acacagacct cgatagcgta aacaagcttt 720 caaattcgga gctggacaat gtactgcaaa agttttacgc tggtgctaga cggaagaacg 780 gaagttatta catgaagaag tcaatgttag ctattagatt cggacttcag cgtcatttcc 840 tcaattgtaa caagatagat atcatcaagc atgaagattt ttccaactcg acgagagttt 900 ttaagtgttt ttcagcaatg cttaaacagg aaggaaaggg agttgtaact cacaaaccag 960 ctatctcagc agaagacatg gacaaaatcc aaggttcgct tgatttggat gatcctgtgg 1020 gtcttcagga caaggtattt atggacgtaa tgttgtactt ttgcaatcgg ggtagagaga 1080 atttgcgtga aatgacactt gacagctttg acatttgtga tgaaggggga aaatgctcca 1140 taactctgaa agatacactc acaaaaaaca accgtgcaga taaactagag aaaagccaag 1200 gtggtgtcat gattccaact aatggtccac gatgtcctgt tgcctccttc ttacgctaca 1260 aagataaatt gaatccacaa tgtaagagtt tttggcagag accggcaaat gcacaggcca 1320 agcgtgagtt gaaatccaat ccatcttctt ctgatcaatg gtactgtaat gcacccctag 1380 ggaaaaacag catcggagac aaaatgaaaa caatttcatc tcgtgcaggt accaaggctt 1440 acaccaacca ttgcctaagg gcaaccagca tcagtaccct acaaaatgct gggttcagag 1500 acagagagat catgagtgtc tccggacaca aggcggagac cagtctcaaa cactatgcta 1560 tgaccagcag tacagcaaaa gaaaacatga gtcatgctat cgcggcagcc gttgatccga 1620 aatcagtacc atcgtcatca aacataggtc atggtatcgc ggcagctgtt gatccgaaat 1680 cagtaccatc gtcatcgaca tctactggtg gtcagcgtag tgaaagccag gaactgcggg 1740 aactaaatga cattttcaat gagatcacaa ataacccaga gaacttccca cgcacatgca 1800 acatcactac aagtagccat gcccatgttt ctactagtca gcaggtgcaa gcccccacat 1860 atcattttaa caactgtact gtaaacattt ttaacaaata gagttatttt ataccagttc 1920 taccagtgag ttattttcta cggagttcta cyattagagt tattttctac ggatttctac 1980 cagttgagtt attttctacg gagttctacc agttgattgg taagttgact cttcggtata 2040 taaaagtatt aatgactgct ttaatattcg agaaatagtt gtttttatac gctctcggga 2100 aggttaca 2108 // ID TU1 repbase; DNA; SPU; 775 BP. XX AC X00146; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus transposable element TU1 fragment. XX KW Repetitive element; transposon; TU1. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-775 RA Liebermann D., Hoffman-Liebermann B., Weinthal J., Childs G., RA Maxson R., Mauron A., Cohen N.S. and Kedes L.; RT "An unusual transposon with long terminal inverted repeats in the RT sea urchin Strongylocentrotus purpuratus."; RL Nature 306, 342-347 (1983). XX DR GenBank; X00146; Positions 609 1383. XX SQ Sequence 775 BP; 188 A; 231 C; 150 G; 206 T; 0 other; ggttccatga cacatgctcc gccgacgatt gctccgccga catttactcc gcaaaacgcg 60 acaattgctc cgcgacattt gctccgcgac atttgctccg acgtcaaatg ctccgccgac 120 agttgctccg ccgacagttg ctccgccgac aattgctccg ccgacaattg ctccgcctga 180 agcgacaatt gctccgccga catttgctcc gccgacaatt gctccgccga catttgctcc 240 gccgaagcgc acctgctccg ccgacatttg ctccgccgac aatgctccgc cgacaacgct 300 ccgcctgaag cgacaatgct ccgccgactg ctccgcctga agcgacaatg ctccgccgac 360 attgctccgc cgacaattgc tccgacgaca tgctccgcat gaagcgacac ttgcaccggg 420 tgacatttgc tccgcgacat ttgctccgcc caaaaagtgt cccattaaat acaaatgcta 480 ctagtactac gacaaatgct tcgccgacaa tatttttttt tcacgggttg tttttgtttc 540 tttctttttt tcttcatttt ttgaatgcat ttcatgacat tatgtaaatg aaatgaaatg 600 aatgaatgtt gataatgtgg gaggaaaagc agtttgccta aaagtcattt cgaatatact 660 gaaataactt tccatctatc actgtacgtc ccacataata aacactaaac actcattaca 720 tgtcatggga agtttttttt tttaaagtta gagcagctaa gccacatccc ccgtg 775 // ID CR1-11_SP repbase; DNA; SPU; 3780 BP. XX AC . XX DT 29-APR-2005 (Rel. 10.04, Created) DT 29-APR-2005 (Rel. 10.04, Last updated, Version 1) XX DE CR1-11_SP is a non-LTR retrotransposon - a consensus sequence. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; KW Interspersed repeat; reverse transcriptase; endonuclease; KW CR1-11_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3780 RA Kapitonov V.V. and Jurka J.; RT "CR1-11_SP non-LTR retrotransposon from the sea urchin genome."; RL Repbase Reports 5(4), 69-69 (2005). XX DR [1] (Consensus) XX CC CR1-11_SP is a non-LTR retrotransposon that belongs to the CR1 CC clade. CC Copies of CR1-11_SP are ~3% divergent form the consensus CC sequence. CC The consensus sequence is incomplete due to 5' truncations of CC CR1-11_SP elements upon their retrotranspositions. CC CR1-11_SP encodes a 986-aa protein (pos. 428-3385) composed of CC the endonuclease and reverse transcriptase domains. The 3' CC terminus CC of CR1-11_SP is composed of the (CAAA) microsatellite. XX FH Key Location/Qualifiers FT CDS 428..3385 FT /product="CR1-11_SP" FT /translation="MNSHAHTPDILVDDINESKYYTPQEFKNSFSYKPDNI FT SLLHINSRSLNKNFEYVENLLHSLNNFAFSVIGISETWLHQNSPDMFNLPN FT YKLIRADRKGRRGGGVAFYITQNLNFKIRSDIKLTQAESLFIEINNSNVKN FT VIIGLIYRPPDSNCELFCDELDFYLHKIGDENKHNFILGDFNINFSPSSDN FT SNSTNCMQLMHSYGFFSIINKPTRINPHSSTQIDNIFSNVHNNKTIGGILC FT SEVSDHLPIFLTCECKLSCSKSFDELYRKESKRNIELLKQDLFFEGWAEVY FT NVNDVNTAYKHFSNKLQYYYEKNIPLGKMSNKRNKPRNPWITKGLLKSIQT FT RNRLYKLHLRNPTDTNLNTYKIYRNKLTKLIRTSRRLHFSNKIKKASSNTT FT ATWKIIKEVMGKKTNPPPTDNITLNGTKIHDPSLHANSFNSFFTNIGPELA FT SKINRTHAHFKDYLSNQNQESLFLNPTNPSEIINITQSLNNSKSHGFDRIS FT MSLLKEIMYPLAKPLTHIFNHSLSQGVFPDLLKIAKVNPILKKDDPHEISN FT YRPISLLPSISKVLEKIVHNRLHKFITKHKILNSNQYGFRKNYSTDLALIQ FT IYDKITSAIANKEHVIGIFCDLSKAFDTLNHAILLSKLSHYGIRGQPLLWF FT KDYLTNRRQYVTFNSYDSDPLLIQCGVPQGSILGPLLFLLYVNDIINTSPL FT LSFILFADDTNIFYSHKDLNSLNNTLNYEINKVSDWFKSNKLSLNTKKTHF FT MYFKHHSHNTETPIYIKIDGMLLEKKTNSKFLGVLIDETLTWNDHLHQVTM FT CISKSIGIISKLKFLLPHATLFLLYNSLVLPYITYCNSVWANCGSTKINSI FT FKLQKKAIRICTGSHFLAHTDPLFYKLKTLKIFDLNTTQVAVIMFKYINNL FT LPPSFDNMFRFNNSVHSYSTRISGNFHLTNPKLSITHKSVRHSGPDIWNDF FT PDNIKSCSTIYSLKATLKRQIIQSYAPHSLN" XX SQ Sequence 3780 BP; 1280 A; 774 C; 484 G; 1242 T; 0 other; taacatgcat acatttttct cctccgcaca acaaatctct ttgttttgca aaactcctgt 60 gtcaatcaca gaatccattg ttatagactg aactagtttt gatgagcggg aatgtcaaat 120 ccctcttttc catttaataa tcgtactccg atttgtcatt attgttatca agcattttgt 180 ttcttcccag cccctctatt ttgcgtgtca aaaatacacc ctttactcgg gcggtcgggc 240 tccgctctgt tgctcctaag caattattgt aactgtgacc aagatgggtc ttattgtatt 300 ttcatttgta ttatattttg aagttacccg cacacttgca cttcgtacac acacaaacgc 360 accagcatca cacatgcagt tgttcatcct ccaaattttc ggtactttac ataatacgta 420 tcgttaaatg aattcgcacg cgcacactcc cgatattctt gtcgacgata taaacgagag 480 caaatactac acaccccaag aattcaaaaa ttcattttct tacaaaccag acaatatttc 540 acttttacat ataaactcca gaagtctgaa caaaaatttc gaatacgttg aaaacctttt 600 acactcttta aataattttg cattttccgt cattggaata agtgagacat ggttacatca 660 gaattctcca gatatgttca atttgcctaa ttataagttg attagggcgg accgcaaagg 720 aagaagaggt ggcggtgttg cgttttatat tacacaaaac ctaaatttca aaatccgttc 780 cgatattaaa ctaacacaag cagaatcttt atttatcgaa attaataact caaatgtcaa 840 aaatgtcatc ataggtttaa tttatagacc ccctgactct aattgtgaat tattctgtga 900 cgaactggat ttttatcttc ataaaatagg ggatgaaaat aaacacaatt ttatccttgg 960 tgactttaac atcaacttct ccccctcatc tgataacagt aactcaacca attgtatgca 1020 gttgatgcat tcatacggct ttttttcgat tattaataaa cccaccagaa taaatccaca 1080 ttcatcaact cagattgaca atattttttc aaacgtacat aacaacaaaa ccatcggtgg 1140 aatattgtgt tctgaagtgt ccgatcacct acccatattt ttaacttgtg aatgcaaact 1200 atcttgcagt aaatcatttg atgagcttta tcgcaaagaa tccaaacgta atatagaatt 1260 gctgaaacag gatttatttt tcgagggatg ggctgaggta tataatgtaa atgatgtcaa 1320 tactgcatat aaacatttta gtaacaaatt gcaatattat tatgaaaaga atattccttt 1380 aggcaaaatg agtaataagc gaaataaacc caggaatcct tggataacga aaggtttatt 1440 gaaatcaata caaacacgca atcgcctcta caaattacat ttacgcaatc caactgacac 1500 taacctaaac acatataaaa tttatcgaaa caaattaaca aaactaatcc gtacatcccg 1560 tagattgcat ttttctaata aaataaaaaa ggccagttca aacactactg caacttggaa 1620 aattatcaaa gaggttatgg ggaaaaaaac gaatccccca cccacggata atatcacatt 1680 aaatggcact aaaatacatg atcctagtct tcatgcaaat tcatttaact cattttttac 1740 gaatatcggc cctgaactcg ccagcaaaat taatagaact cacgctcact ttaaagacta 1800 tctttccaat caaaaccaag agtctctctt tttaaatccg acaaatccta gcgaaattat 1860 taacattacc caatctctta acaactcaaa atcccacggt tttgatagaa taagtatgtc 1920 tctcctaaaa gaaataatgt atccacttgc aaagccttta actcacatat ttaatcactc 1980 gttatcgcaa ggtgttttcc ctgatctatt aaaaatagct aaagtcaacc ccattctcaa 2040 aaaagatgat cctcacgaaa ttagtaacta tcgtccaatt tccctacttc caagtatatc 2100 caaagtctta gaaaaaatcg ttcataatag gctacacaaa tttatcacta aacacaaaat 2160 actcaattca aatcaatatg gcttcagaaa aaattactca actgacttag cattaattca 2220 aatttatgac aaaattacaa gtgccatagc taacaaagag catgttatag gtatattctg 2280 tgacttgagt aaagcatttg atacgctcaa tcacgctatt ctactctcca aactcagtca 2340 ttacggaatt cggggtcagc cactcttatg gtttaaagat tatttaacaa acagaagaca 2400 atatgttaca tttaatagtt atgattctga tcctctttta attcaatgcg gtgttcctca 2460 aggctccatc ttaggtccac tgttatttct tctttatgta aatgatatta tcaatacatc 2520 cccccttctt tcttttatct tatttgccga tgatacaaat atcttttatt cccataaaga 2580 ccttaattcg ttaaacaata ctttgaatta tgaaattaac aaagtatcag attggtttaa 2640 atccaataaa ctttcactta atacaaaaaa gactcatttc atgtatttta aacatcattc 2700 tcataataca gaaacaccta tatatattaa aatcgatggt atgctactag agaagaaaac 2760 taattccaag tttttgggtg ttcttataga tgaaaccttg acttggaatg atcatttaca 2820 ccaagttaca atgtgcattt ccaaaagtat tggaataatc tccaagttaa agtttcttct 2880 accccatgca accttattcc tactatataa ttcgctagtt ctcccgtata taacatattg 2940 taatagtgta tgggcaaatt gtggttcgac aaaaattaat tctattttca aactgcaaaa 3000 gaaagccata cgtatttgta caggttcgca tttcttagct cacactgatc ctttattcta 3060 taaacttaaa acactaaaaa ttttcgatct gaacactact caagtagcag ttattatgtt 3120 taagtacatt aataatctgc ttccaccatc ctttgataac atgtttaggt ttaataattc 3180 cgttcattca tactctactc gcatatctgg aaacttccat cttacaaatc ccaaattatc 3240 aataacacac aaatctgtta gacattctgg cccggacatt tggaatgatt ttcccgacaa 3300 cataaagtct tgttcaacca tctactcctt aaaagctaca cttaaacgac aaataataca 3360 atcatatgct ccccactctt taaattagta taacaaaacc gtgacttatt tattctttat 3420 catgcaactg cttactgcac ctgcacttgc accgcaccct cttgatcact cagtttttcg 3480 aagagagtta tgtcgccaat tctttttacg aggccgccat ccatctccag cctaaccgct 3540 cacgatggtg gtctcctgcg ttctaaatta cctctctaat ttattgaaaa tatttcatat 3600 tatgttattg tatgcttcgt acatgtttat cgtatgatat aattgtacat gattttttat 3660 ttaattactt ttgtaaacat tttattcatt gtatttgtta ttgttcgaat ttttgtactt 3720 tgaatttgaa tttgtatatt tttgaacgca gaaataaaat caatcaaaca aacaaacaaa 3780 // ID Ingi-2_SPur repbase; DNA; SPU; 3528 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 19-FEB-2010 (Rel. 14.02, Last updated, Version 6) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey2_SP; KW Ingi-2_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3528 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 495-495 (2009). XX RN [2] RP 1-3528 RA Kapitonov V.V. and Jurka J.; RT "New families of I non-LTR retrotransposons from animals."; RL Repbase Reports 9(7), 1533-1533 (2009). XX RN [3] RP 1-3528 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to Repbase Update (02-FEB-2010). XX DR [1] (Consensus) XX CC Originally classified as Jockey [1]. Re-classified as Ingi [2]. CC The 3' termini are composed by (GAA)n microsatellite, as the same CC as Ingi-1_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 500..3505 FT /product="Ingi-2_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains, and a CCHC zinc-finger FT motif." FT /translation="MATNDNDDQFVAEAQGRTHGSLSGPALSIISSNIEGL FT SGAKQELLADLCITTNCDILCLQETHRGPTRVRPRISGMTLIAERPHDQYG FT SAIFARNGLAVDKSYLSDVNNIEVLSIDLMGITVSSVYKPPQEPFDLPGRA FT TDGRMNVVIGDFNSHSISWGYREMNEDGELVETWADANQLSLIHDAKLPAS FT FNSARWRRGYNPDLIFTSTRIANQCEKVILDPIPHSQHRPIGLKVNAVITP FT RAVPFRRRFNLRKANWEKFAKDFDSYIQDLPATPQNYDTFVELMKKSSRRN FT IPRGCRTSYIQGLTDHSKVMYEDYIEHFQMDPFSEETLESGENLTKEIGES FT RRRKWQEFIQSTDMTHSSRKAWKTIRILGNDYTKAQPRSEVTADQVAHQLL FT LNGRGNPDHHPRRARLPKVPDALSSQDDPGFTRPFTMNDLLAAIKAMKNNK FT AAGLDDILCEQIKQLRPGALNWLLKMFNECLGTNNIPKLWRKSKVIALLKP FT GKDAASPKSYRPISLLCHTYKLFERLILNRIAPFVDEHLIPEQAGFRPGKS FT CTGQLLNLTQFIEDGYESKLITGAAFVDLSAAYDTVNHRILTRKIFELTKD FT VRLTGLIQTLLSNRRYFVVLNGNRSRWRRQKNGLPQGSVLAPLLFNVYTND FT QPIHPNTRSFLYADDLCIATQNQSFVKLEESLSDALAGLIPYYATNHLRAN FT PDKTQISAFHLKNRDANHQLRISWYGKRLKHTPNPVYLGVTLDRSLTYKNH FT IANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCFSAAEYASPVWSR FT SAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPPHVRRLVLSQKEK FT DKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPHNQRMTLWSNHLQ FT TTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCRVLMQRWGLGDEQ FT TACECGQEQTMEHLLVCPLLPEPCTQDDLEAVNCRAKACVDHWTGLV" XX SQ Sequence 3528 BP; 1002 A; 964 C; 770 G; 791 T; 1 other; aggctctgta taagcttggc ttgttagagc tcttgtgagt tgtgtgccgc ggggtttcat 60 atccttaaac tgctggcgaa cagagcaaca agaccaagct ctgtaattgt taggtttctc 120 caatggtagg tttgtctaat aatgccgagt ttgtgccacg gaacctagtc ggacatttcg 180 attatattct ttttatgtca tacgtcttta tctttttttt ttttaaatat tttttatagt 240 ttagtctacc ttgctgatac ctcctcaaaa tatatacgat agactatcat taattctgct 300 gcattaccat atagcttact tagaggttac tgcagatcaa tcacctgtac tgtatctaga 360 ctatagttaa gtgtaggaga acagtaaaaa cagtggggcc attgaaggag cgttcacgtc 420 gcggtccgtc agatgaaaat ctgcgaatcc ttcaaccaca ctacccaagt ttcttttagt 480 aactaccaca accaacacca tggctaccaa tgacaatgat gaccaatttg ttgctgaggc 540 ccagggtcga actcatgggt ccttgtcagg accggccctg agtatcatct catccaacat 600 tgaaggtctt tcaggcgcca aacaagaact cttggctgac ctatgcataa caaccaactg 660 tgacattctc tgcctccagg agacccatcg cgggcctaca cgagttcgcc ctcgtatctc 720 cggaatgacc ctcatcgcag agagaccaca tgaccaatac ggaagtgcaa tctttgcccg 780 taatggtctt gctgtggaca aatcttacct atcagacgtc aataacattg aagtcctttc 840 tattgaccta atgggaatca ccgtaagctc cgtgtacaag ccacctcaag agcctttcga 900 cctgcccggc agagctactg acggcaggat gaatgtggtc attggtgatt tcaacagcca 960 tagcatttcc tggggatata gagaaatgaa cgaagatggt gaactcgttg agacatgggc 1020 agatgctaac cagctgtccc tcattcatga cgctaagctt cctgcctctt tcaacagtgc 1080 aaggtggaga cgtggctaca accctgacct gatatttaca tctaccagga ttgctaacca 1140 gtgcgagaaa gtcattctcg acccaatccc tcactcccag caccgaccga tagggcttaa 1200 ggttaatgca gtcattactc cacgagcagt acccttccga cgtcgtttca acctgaggaa 1260 ggcaaactgg gaaaagtttg ctaaggactt tgactcctac atccaggacc tacctgccac 1320 cccccaaaac tacgacacct ttgtagagtt gatgaagaaa tcgtcaaggc gtaacatccc 1380 ccgaggatgt cgcacaagct acattcaagg cttgacggac cactccaagg tgatgtatga 1440 agactacatc gaacacttcc agatggaccc ctttagtgag gagacactgg aatctggaga 1500 aaatctgacc aaggaaattg gtgaatctag aaggaggaag tggcaggaat tcattcaatc 1560 cactgacatg acacatagca gcaggaaggc atggaaaacg atccggatac tgggcaacga 1620 ctatacaaag gcccaaccaa gatctgaagt cactgccgac caagttgccc atcaactcct 1680 attgaatggt cggggaaacc ctgaccatca ccccagaaga gccagactcc ctaaggtccc 1740 agacgctcta agctctcaag atgacccagg cttcactaga ccgttcacca tgaacgacct 1800 gcttgctgcc atcaaagcaa tgaaaaacaa caaagctgct ggacttgatg acatcctctg 1860 cgagcagatc aaacagctta gaccaggcgc cctcaactgg cttctcaaaa tgttcaacga 1920 atgtttgggc accaacaaca tcccaaagct ctggaggaaa tccaaagtta ttgccctatt 1980 gaagcctggt aaagacgcag ccagtccaaa gagctacagg cctatctccc tactgtgcca 2040 tacatataag ctgttcgagc ggcttatcct caaccgcatc gccccattcg tggatgaaca 2100 tctcattcca gaacaagcag ggtttaggcc aggaaaatca tgcactggcc aactcctaaa 2160 cctcactcag ttcattgagg acgggtatga gagtaagcta atcaccggag ctgctttcgt 2220 tgatctctct gctgcctacg acaccgtgaa ccacagaatc cttaccagga agatctttga 2280 gctgacaaag gacgtgagac tgactggact catccagacg ttgctgtcca atcggcgata 2340 ttttgtggtt ctcaatggga atcgcagcag atggcgcaga cagaaaaatg gcctaccaca 2400 aggaagtgtg ctcgcaccgt tactctttaa cgtgtacacg aacgaccaac cgatccaccc 2460 aaacaccagg agcttcctct acgccgatga tctctgcatc gccacccaga accagtcttt 2520 tgtgaagttg gaggagtccc tcagtgatgc cctggccggt ctcatcccat actatgcgac 2580 caaccacctg agagctaacc ctgataaaac tcagataagc gcattccacc tcaagaacag 2640 ggatgccaac catcaactaa ggatcagctg gtatgggaaa aggctgaagc acactcccaa 2700 cccagtctac ttaggcgtca cactcgatcg ctcccttacc tacaagaacc acattgccaa 2760 cacaaaggca aaagttggag cccgcaacag catcctcaag aagctagcca acaccaactg 2820 ggggactgat gccagaacaa tccggacgac agccctcgcg ctttgcttct ctgctgcgga 2880 gtatgcatca ccagtatgga gtaggtcggc ccatgcaccc aagattgacc cagctctaaa 2940 ttcatcttgc agagcgatca ctggatgcct aaggccaact aaagtagaag acatctacct 3000 gctctgcggt attgcccctc cacacgtcag aaggttggtc ttgtcccaga aagaaaagga 3060 caaacaagaa aacaatccac tccacccact cttcgaacaa cagccagtgg gcaagcggct 3120 caaatccaga cacagctttc tgcactckgt agagcccctt aatactagcc ctcacaacca 3180 aaggatgact ttgtggtcta accaccttca gaccactcca cataaactct ccctcagccc 3240 gaaggaatcc ctcgcaaccg gctccagtga gacttggcct acctggctta gcctcaaccg 3300 cctaagaact ggctacggtc gatgcagagt cctaatgcag aggtggggtc taggagacga 3360 acaaacagca tgtgaatgcg gccaggaaca gacaatggaa cacctgctag tctgcccact 3420 cctgccagag ccatgcaccc aagatgacct ggaagccgtg aattgccgtg ccaaagcctg 3480 tgtggaccac tggacgggac ttgtgtagtg actcgataag aagaagaa 3528 // ID Ingi-2_SPur repbase; DNA; SPU; 3528 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 03-FEB-2010 (Rel. 14.02, Last updated, Version 5) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey2_SP; KW Ingi-2_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3528 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 495-495 (2009). XX RN [2] RP 1-3528 RA Jurka J.; RT "Re-classified as Ingi."; RL Direct Submission to Repbase Update (12-JAN-2010). XX RN [3] RP 1-3528 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to Repbase Update (02-FEB-2010). XX DR [1] (Consensus) XX CC The 3' termini are composed by (GAA)n microsatellite, as the same CC as Ingi-1_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 500..3505 FT /product="Ingi-2_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains, and a CCHC zinc-finger FT motif." FT /translation="MATNDNDDQFVAEAQGRTHGSLSGPALSIISSNIEGL FT SGAKQELLADLCITTNCDILCLQETHRGPTRVRPRISGMTLIAERPHDQYG FT SAIFARNGLAVDKSYLSDVNNIEVLSIDLMGITVSSVYKPPQEPFDLPGRA FT TDGRMNVVIGDFNSHSISWGYREMNEDGELVETWADANQLSLIHDAKLPAS FT FNSARWRRGYNPDLIFTSTRIANQCEKVILDPIPHSQHRPIGLKVNAVITP FT RAVPFRRRFNLRKANWEKFAKDFDSYIQDLPATPQNYDTFVELMKKSSRRN FT IPRGCRTSYIQGLTDHSKVMYEDYIEHFQMDPFSEETLESGENLTKEIGES FT RRRKWQEFIQSTDMTHSSRKAWKTIRILGNDYTKAQPRSEVTADQVAHQLL FT LNGRGNPDHHPRRARLPKVPDALSSQDDPGFTRPFTMNDLLAAIKAMKNNK FT AAGLDDILCEQIKQLRPGALNWLLKMFNECLGTNNIPKLWRKSKVIALLKP FT GKDAASPKSYRPISLLCHTYKLFERLILNRIAPFVDEHLIPEQAGFRPGKS FT CTGQLLNLTQFIEDGYESKLITGAAFVDLSAAYDTVNHRILTRKIFELTKD FT VRLTGLIQTLLSNRRYFVVLNGNRSRWRRQKNGLPQGSVLAPLLFNVYTND FT QPIHPNTRSFLYADDLCIATQNQSFVKLEESLSDALAGLIPYYATNHLRAN FT PDKTQISAFHLKNRDANHQLRISWYGKRLKHTPNPVYLGVTLDRSLTYKNH FT IANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCFSAAEYASPVWSR FT SAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPPHVRRLVLSQKEK FT DKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPHNQRMTLWSNHLQ FT TTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCRVLMQRWGLGDEQ FT TACECGQEQTMEHLLVCPLLPEPCTQDDLEAVNCRAKACVDHWTGLV" XX SQ Sequence 3528 BP; 1002 A; 964 C; 770 G; 791 T; 1 other; aggctctgta taagcttggc ttgttagagc tcttgtgagt tgtgtgccgc ggggtttcat 60 atccttaaac tgctggcgaa cagagcaaca agaccaagct ctgtaattgt taggtttctc 120 caatggtagg tttgtctaat aatgccgagt ttgtgccacg gaacctagtc ggacatttcg 180 attatattct ttttatgtca tacgtcttta tctttttttt ttttaaatat tttttatagt 240 ttagtctacc ttgctgatac ctcctcaaaa tatatacgat agactatcat taattctgct 300 gcattaccat atagcttact tagaggttac tgcagatcaa tcacctgtac tgtatctaga 360 ctatagttaa gtgtaggaga acagtaaaaa cagtggggcc attgaaggag cgttcacgtc 420 gcggtccgtc agatgaaaat ctgcgaatcc ttcaaccaca ctacccaagt ttcttttagt 480 aactaccaca accaacacca tggctaccaa tgacaatgat gaccaatttg ttgctgaggc 540 ccagggtcga actcatgggt ccttgtcagg accggccctg agtatcatct catccaacat 600 tgaaggtctt tcaggcgcca aacaagaact cttggctgac ctatgcataa caaccaactg 660 tgacattctc tgcctccagg agacccatcg cgggcctaca cgagttcgcc ctcgtatctc 720 cggaatgacc ctcatcgcag agagaccaca tgaccaatac ggaagtgcaa tctttgcccg 780 taatggtctt gctgtggaca aatcttacct atcagacgtc aataacattg aagtcctttc 840 tattgaccta atgggaatca ccgtaagctc cgtgtacaag ccacctcaag agcctttcga 900 cctgcccggc agagctactg acggcaggat gaatgtggtc attggtgatt tcaacagcca 960 tagcatttcc tggggatata gagaaatgaa cgaagatggt gaactcgttg agacatgggc 1020 agatgctaac cagctgtccc tcattcatga cgctaagctt cctgcctctt tcaacagtgc 1080 aaggtggaga cgtggctaca accctgacct gatatttaca tctaccagga ttgctaacca 1140 gtgcgagaaa gtcattctcg acccaatccc tcactcccag caccgaccga tagggcttaa 1200 ggttaatgca gtcattactc cacgagcagt acccttccga cgtcgtttca acctgaggaa 1260 ggcaaactgg gaaaagtttg ctaaggactt tgactcctac atccaggacc tacctgccac 1320 cccccaaaac tacgacacct ttgtagagtt gatgaagaaa tcgtcaaggc gtaacatccc 1380 ccgaggatgt cgcacaagct acattcaagg cttgacggac cactccaagg tgatgtatga 1440 agactacatc gaacacttcc agatggaccc ctttagtgag gagacactgg aatctggaga 1500 aaatctgacc aaggaaattg gtgaatctag aaggaggaag tggcaggaat tcattcaatc 1560 cactgacatg acacatagca gcaggaaggc atggaaaacg atccggatac tgggcaacga 1620 ctatacaaag gcccaaccaa gatctgaagt cactgccgac caagttgccc atcaactcct 1680 attgaatggt cggggaaacc ctgaccatca ccccagaaga gccagactcc ctaaggtccc 1740 agacgctcta agctctcaag atgacccagg cttcactaga ccgttcacca tgaacgacct 1800 gcttgctgcc atcaaagcaa tgaaaaacaa caaagctgct ggacttgatg acatcctctg 1860 cgagcagatc aaacagctta gaccaggcgc cctcaactgg cttctcaaaa tgttcaacga 1920 atgtttgggc accaacaaca tcccaaagct ctggaggaaa tccaaagtta ttgccctatt 1980 gaagcctggt aaagacgcag ccagtccaaa gagctacagg cctatctccc tactgtgcca 2040 tacatataag ctgttcgagc ggcttatcct caaccgcatc gccccattcg tggatgaaca 2100 tctcattcca gaacaagcag ggtttaggcc aggaaaatca tgcactggcc aactcctaaa 2160 cctcactcag ttcattgagg acgggtatga gagtaagcta atcaccggag ctgctttcgt 2220 tgatctctct gctgcctacg acaccgtgaa ccacagaatc cttaccagga agatctttga 2280 gctgacaaag gacgtgagac tgactggact catccagacg ttgctgtcca atcggcgata 2340 ttttgtggtt ctcaatggga atcgcagcag atggcgcaga cagaaaaatg gcctaccaca 2400 aggaagtgtg ctcgcaccgt tactctttaa cgtgtacacg aacgaccaac cgatccaccc 2460 aaacaccagg agcttcctct acgccgatga tctctgcatc gccacccaga accagtcttt 2520 tgtgaagttg gaggagtccc tcagtgatgc cctggccggt ctcatcccat actatgcgac 2580 caaccacctg agagctaacc ctgataaaac tcagataagc gcattccacc tcaagaacag 2640 ggatgccaac catcaactaa ggatcagctg gtatgggaaa aggctgaagc acactcccaa 2700 cccagtctac ttaggcgtca cactcgatcg ctcccttacc tacaagaacc acattgccaa 2760 cacaaaggca aaagttggag cccgcaacag catcctcaag aagctagcca acaccaactg 2820 ggggactgat gccagaacaa tccggacgac agccctcgcg ctttgcttct ctgctgcgga 2880 gtatgcatca ccagtatgga gtaggtcggc ccatgcaccc aagattgacc cagctctaaa 2940 ttcatcttgc agagcgatca ctggatgcct aaggccaact aaagtagaag acatctacct 3000 gctctgcggt attgcccctc cacacgtcag aaggttggtc ttgtcccaga aagaaaagga 3060 caaacaagaa aacaatccac tccacccact cttcgaacaa cagccagtgg gcaagcggct 3120 caaatccaga cacagctttc tgcactckgt agagcccctt aatactagcc ctcacaacca 3180 aaggatgact ttgtggtcta accaccttca gaccactcca cataaactct ccctcagccc 3240 gaaggaatcc ctcgcaaccg gctccagtga gacttggcct acctggctta gcctcaaccg 3300 cctaagaact ggctacggtc gatgcagagt cctaatgcag aggtggggtc taggagacga 3360 acaaacagca tgtgaatgcg gccaggaaca gacaatggaa cacctgctag tctgcccact 3420 cctgccagag ccatgcaccc aagatgacct ggaagccgtg aattgccgtg ccaaagcctg 3480 tgtggaccac tggacgggac ttgtgtagtg actcgataag aagaagaa 3528 // ID DNA7-1_SP repbase; DNA; SPU; 908 BP. XX AC . XX DT 29-NOV-2005 (Rel. 10.11, Created) DT 12-JAN-2009 (Rel. 10.11, Last updated, Version 2) XX DE Nonautonomous hATw DNA transposon - a consensus sequence. XX KW DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; nonautonomous DNA transposon; DNA7-1_SP; KW hATw-2N1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-908 RA Kapitonov V.V. and Jurka J.; RT "DNA7-1_SP, a family of nonautonomous DNA transposon in the sea RT urchin genome."; RL Repbase Reports 5(11), 342-342 (2005). XX DR [1] (Consensus) XX CC The genome contains several hundred copies of DNA7-1_SP. These CC elements are characterized by 7-bp target site duplications CC and 15-bp terminal inverted repeats (one mismatch). CC This element is a nonautonomous version of hATw-2_SP. XX SQ Sequence 908 BP; 271 A; 199 C; 186 G; 252 T; 0 other; tagggtgtct gatcgcgcac ccgatgttgt gtgctaaaat ccttcccata gagattgcac 60 gcatccctat gcagtctacg tgcattgcgc gaccatgcaa aattggtcaa tgattttatg 120 aaaaaaattg aaattcaaac ctttagggct tgtgatcctg aaggtgaaac tcaataaatg 180 aggtgtcata tgaaagagca ggtttttctc catattcccc aaaggggcgc acccccgaaa 240 ttctaaaaat atcttggtca aaacagcgat tgaaatgttg tttgcatcct agctccaaaa 300 tttgccactt tcctgagctg cgccccccgg gcttatgtcc ggctagacgt aaggaaaata 360 tctatgcact tattttttcg ctagccccaa gagatcactc gccccaacag tttaaaaata 420 cccttcccac tatttttgga atcagctaat tagggaggcg tgagctccgc tcagtccaaa 480 ccatggttac atcgcgtaac atctgcgcgt atagtgaatg aaagtatgga tagccgttcg 540 cgccataaaa cccggaagtg aatacacgtt atagtcaatg gcacatatcg cggagacaac 600 gtggctcaag ctgcaagttg cgcatgaaca tgcgtacgct atgcatacgc ttgcatatcg 660 cgcgatacag ctgtttggct aaatttagca aaacaacata actctgcgtg tacgtctttt 720 tcgtcgattc tgaccaaaat gctatgaata ttgcagcgtt ttggaggggc tgtatctttt 780 gatagaaaca tcggtgagac ttgaaatttg aaatgtatta ttctgattac attttttatt 840 caaatatcaa acaaaaatgg tgaaaaacga tcccaaattg aaaattgaaa aatcgttcag 900 acacccta 908 // ID SP2109AA repbase; DNA; SPU; 273 BP. XX AC K01645; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus 2109A repeat element. XX KW Repetitive sequence; 2109A repetitive sequence; SP2109AA. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-273 RA Posakony W.J., Flytzanis N.C., Britten J.R. and Davidson H.E.; RT "Interspersed sequence organization and developmental RT representation of cloned poly(A) RNAs from sea urchin eggs."; RL J. Mol. Biol 167, 361-389 (1983). XX DR GenBank; K01645; Positions 1 273. XX SQ Sequence 273 BP; 74 A; 51 C; 54 G; 94 T; 0 other; ggatcaggat ttgtaactct cctacatcag ctctatgttg ccaacctctc gatgaagcta 60 ttgctgcaaa ctctttgagt gtagcattcc aactttgaaa caggggggca tttcacaaaa 120 cttatcatca gtgacaaatg acagtttttt ttataagcta ccggtactga aatccttgct 180 tatgactggt tatcagcaga tttgtttctg atttttgtca tttttcattg aaaaaaaggc 240 tttgtgaaac gggtccttgg tttactaaag gag 273 // ID Jockey1_SP repbase; DNA; SPU; 3144 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 06-MAR-2009 (Rel. 14.02, Last updated, Version 1) XX DE Jockey-type non-ltr retrotransposon :consensus sequence. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; Jockey1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3144 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 494-494 (2009). XX DR [1] (Consensus) XX CC This is the first Jockey-type element outside Arthropoda. CC Possibly incomplete. XX FH Key Location/Qualifiers FT CDS join(151..2382,2360..3142) FT /product="Jockey1_SP_1p" FT /translation="MAPTDCRRKHASSSGRXVTVMSINTEGFSXAKQQLIG FT KLCKENDCVALCLQETHRGHQHVRPRIPGMKLAIERPHEKYGSAIFVRKDV FT IVDQTSLTEEDNIEVLAVDMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNV FT IIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWK FT KGYNPDLSFTSERISCQTKKXVLEPIPHSQHRPIIVDITAAVVPQRVPLRR FT RFNFRKADWEKFAIDLDEAXSDLDPVPANYDQFVRTVQEISRKHIPRGCRE FT NYIPGLSAESALMYEEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQD FT LIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAH FT KKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHF FT GHNTREWPLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISL FT LCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDG FT FEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRR FT FYVELNGKRSRWRKQKNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADD FT LGIAAQNSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSSFHLRNYN FT AGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKSIKACSKGEGKHVQKVK FT GKVGTRNNLLRKLANSSWGANSSTLRSTALALCYSAAEYACPVWGRSSHAK FT KVDAALNDSCRCITGCLKPTNVDSLHSLAGIAPSDVRRTVASRTERSRQVE FT DTRHPLYSHQPAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHH FT EKLPIPTKEQLPPGHRCDWKTWKSLNRLRTGVGRCEYNMHEWGYADDTDTD FT CECGTSVQSVSHLLRCPLLXDQCCLEDPVAEMRRLFSVQKPGRAFEDTKE" XX SQ Sequence 3144 BP; 923 A; 823 C; 702 G; 677 T; 19 other; tgacgtcaca atagaagact gctgaktgtc tacttatcta agcgtccacg tcgcggggct 60 ggaaactgga catcgtcctg agctaattcc gccaccacca tcatccatcc atctcatcta 120 ctcttaccag caagtaaata ytayctaata atggctccca ctgattgtcg ccggaagcat 180 gcatcctctt caggacggam ggtaacagtg atgtccatca acactgaggg gttttcanca 240 gcgaaacaac aactcattgg aaagctctgc aaagagaacg actgtgtagc attatgtctc 300 caagagaccc acagaggcca ccaacacgtt cgaccgagga ttcctggaat gaagytggct 360 atagagaggc cacatgagaa atatggaagt gctatctttg ttaggaaaga tgtgatcgtc 420 gatcagacct cactgactga agaggataac atagaagtcc ttgctgtcga catggggaaa 480 ctaacagtca cttctgttta taaaccaccg ggatctacat ttgcctttac tgaacctcaa 540 tctttcgact atgaccttgt taatgttatt attggagatt ttaacagcca tagcacctcg 600 tggggatacg aagaaacgaa tgaggatggt gaccttgctg aggcctgggc agaggcacat 660 catcttgacc taatccatga tgctaagctc ccccattcct tcaatagctg tcgatggaag 720 aaaggttata atccagacct atcctttaca agtgaacgaa tatcatgcca aaccaagaaa 780 ngagtcctng agccaatacc acattcacaa cacagaccaa taatcgttga cattactgct 840 gccgtggtac ctcagagagt tcccctacga cgccgtttca attttcgtaa agctgactgg 900 gagaagttcg ccatcgatct agatgaagct mtatctgatc ttgacccagt cccggcaaac 960 tacgaccaat tcgtccggac tgtacaggag atatccagga agcacattcc acgtggatgt 1020 agggaaaact acatacctgg attatcagct gaaagcgcct tgatgtacga ggagtacata 1080 aaactctacg aggaagaccc cttttcagag gaaaccttga gtgcaggtga gctcctcatg 1140 gcagcaatat cagaagaacg gaggaagtcy tggcaagatc tcattgaggg cgttgatatg 1200 acgcacaaca gtaagagagc ttggtctacc attaagaaaa tcagtaacga tcccaagaag 1260 tctacacccc attctaatgt tactgcagat caggttgccc accaacttct cctgaatggc 1320 aaatcggcac acaagaaacg ccacaaaagg aatccttggc cacaggttga cacagaatct 1380 acctggtact ttaacaactt ggaactccag acggctatcg actcccttaa gaacggcaag 1440 gcagctggtc ttgatgacat acgtacagaa cagatcaaac attttgggca caatacacgg 1500 gagtggccgc tctctctgtt cgacaactgc gtaaccctct cccagcttcc taaaatctgg 1560 cggaaagccc gtgtgattgc tatcctcaag ccagggaaag accctaacga agcaaagagc 1620 tacagaccaa tctccctgtt gtgccacctc ttcaagctct ttgagcgcct catcctgaac 1680 agactggggc cagtcacaga acaacacctg ataccagagc aagcaggttt ccggcctgga 1740 agatcgtgca ctggccaagt gctaaatcta acccagcaca tcgaggatgg tttcgagaag 1800 aatgaaccga ctggagttgt gttcgtcgac ctgacagctg cctacgacac tgttaaccac 1860 cgtatacttc tcgacaagct ctataccatg acaaaggact cccatctgac taagcttatc 1920 caaatgctcc tggaaaatag acgcttttat gttgagctca acgggaagcg cagcagatgg 1980 aggaaacaaa agaatggtct acctcagggc agtgtacttg ctcctgtsct mtttaatgtc 2040 tacaccaacg accagccagt gtacccaggg acaagaagct tcatctatgc tgatgacctt 2100 ggcatagcag cccagaattc ycacatagac aagatagaag ccactctttc atcagcccta 2160 gacaacctga cagactacta caacaacaac catctgaagg ctaaccctgc caagacccag 2220 gttagctcgt tccatctccg caactacaat gctgggagga agctgtccct gaaatggaac 2280 gatgtctcat tgaaacactg cgatcaccct gtctaccttg gaatcactct tgaccgaacc 2340 ctttcataca aaagcataaa agcatgttca aaaggtgaag ggtaaagttg ggacaaggaa 2400 caacctccta cggaaactgg caaactcatc ttggggtgcc aattcctcca cgctgaggtc 2460 aactgctctt gcgttgtgyt actctgcagc agaatatgcc tgccctgtat ggggaagatc 2520 atcccacgca aagaaagttg atgcagcact caacgacagc tgcagatgca tcactggctg 2580 cctcaagccc acgaatgtgg acagcttgca ctccctggcc ggcattgctc catccgatgt 2640 ccgcagaaca gttgcaagta ggactgaacg cagcagacaa gttgaggaca cccgccatcc 2700 cctttactcg catcaaccgg cccctacccg cctgaagtca aggaaaagct tccttcatac 2760 agtccagcca ctgtcacaac ctcctcattc aaccagagtg atcttgtggg aagagaaacg 2820 ttgtgaaaac caccaccatg aaaagctacc aatcccgacc aaggaacagc tgccmcctgg 2880 ccatagatgt gattggaaga cgtggaagtc cctcaatagg cttcgcacag gggtggggcg 2940 atgcgaatac aacatgcacg aatggggata cgctgacgac acagacaccg actgcgagtg 3000 tggaacatcc gtgcaatccg tgtcacacyt attaagatgy ccactcctar wtgaccaatg 3060 ctgcctggaa gacccggtgg cagaaatgag aaggctcttc agtgtgcaaa agcctggcag 3120 agcatttgag gacacgaaag aaga 3144 // ID hAT6-2_SP repbase; DNA; SPU; 5381 BP. XX AC . XX DT 31-DEC-2007 (Rel. 12.12, Created) DT 02-JAN-2008 (Rel. 12.12, Last updated, Version 1) XX DE Sea urchin hAT6-2_SP autonomous DNA transposon - a consensus DE sequence. XX KW hAT; DNA transposon; Transposable Element; 6-bp TSDs; hAT6 group; KW hAT6-2_SP; hAT6-2N1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-5381 RA Kapitonov V.V. and Jurka J.; RT "hAT6 - a novel group of hAT DNA transposons characterized by RT 6-bp target site duplications."; RL Repbase Reports 7(12), 1203-1203 (2007). XX DR [1] (Consensus) XX CC hAT6-2_SP is a young family of hAT DNA transposons and it belongs CC to a novel group of hAT transposons, called hAT6, generating 6-bp CC target site duplications upon their insertions into chromosomal CC DNA. The hAT6 transposase is remotely similar to the standard hAT CC transposase; identified hAT6 transposase sequences form a CC distinctive phylogenetic cluster. hAT6-2_SP is flanked by 13-bp CC TIRs and encodes a 884-aa transposase (2 exons). The transposase CC contains the C2H2 zinc finger motif present in diverse hAT CC transposase sequences encoded by different hAT transposons. CC hAT6-2N1_SP is an example of a non-autonomous family derived from CC hAT6-2_SP. XX FH Key Location/Qualifiers FT CDS join(884..1346,2534..4668) FT /product="hAT6-2_SPp" FT /note="transposase." FT /translation="MTSTSSKKRSKKLQTFSGDYTKKWSCIVPSKRNTNSA FT CCTHCSSDFGIGHGGSNDIQVGLHLKSVKHRTAAAEASSNSRSHDIAQFFV FT AKDNSVTNAEVKFTQFLIEHNIAFSAADHLSQLVKNAFPDSKIASKYACRR FT SKATAIARTLGQETKGDIIRKIREKPFSISTDGSSDRGADEQLYPILVRYF FT DDDAQHVVTVLLEIATTKGSSTGKNIFQLLDQALTENKIPWKNVTCFSADN FT AAVMMGVHNGVAAFVREKNPEVYVNGCVCHLLHLAAEKGAQQLPSSPVDLL FT IPIFYYLEKSSKRHKAFHEVQSCCDVKQHAILKHVCTRWLSLEQALNRLIE FT QWVPLVEFFRSESETSSSSAQKKKSVQSKTTAKKVQPQPQPQKKNTGNAKV FT SVTSSKPVSGKASTSSESSSGTKRKIEDSHQNRGKQLKPSSSHQVHQPSQK FT KSSGYIIPHIAKTSSSKPALGKSSTTPASVSKASTSKSSPVVTKTLSSHGT FT APSTSAFPSTSSIGKKASDVTKKDLPKGTKVGSGKVKMPPPRSSWAPSSQK FT TGQVFAGTEHAVSKTSQEVPATSKAAAIYDKLTNDENKLYCLFLQHNIPLF FT TVLNLELQEESPKIHVLLDRLQAFLQNVLTRFVKPKVLMASSQECDYKTND FT NQREDNDLVIGSKVRELLQSGNFSDGQKRKFFSSVRQYYISVCNYVLSKFP FT LKDPLLMHARVANLERRQETPFVSVEYFVRRFHFMEDDIDTLELEYASYQS FT DPSVDKIDASKADLAWVAVSQLKDPTSGQFCYAHLVQVMMLILSISHSNAS FT DERLFSLVRKNKTEFRASLSTATLSDVLTQKATCQSKGQNCHDMKFSDQLL FT TKCKGAAMAFCKQ" XX SQ Sequence 5381 BP; 1665 A; 1087 C; 1099 G; 1530 T; 0 other; cagagctgcc aactagtacg gattttccgt aattggtacg gaaatcaacg gcaattacgg 60 aagcacggaa accccttcaa aaattacgga ttccccgatt tctggacatg cctatgtatt 120 aacacatgca ttatgcatat gcgagtgttt tagcggtaat gatcgcgata cttcccgggc 180 ctcggcccgg tggttaactt ttgagcgcac ggaaatatca tccgcgcctc agccacgacc 240 actgcacaca catgtagcta ccatcgaaag atatgcacac cgccctgcct atatgggctg 300 cgtgtgctag ctttcagcat gcaatatata tcggggagac ggcaaactcg tcccaagtcc 360 atttagccac cttgcaaacc aacccgtacg gtaccatgtc catgtgtagt ttatagcagg 420 tctacaattt ttttcccctt agtgatgggt tctcattgtt atgataataa aagtacgact 480 cgactaatga tgaagatgat gatgatgatg atgatgatga tgatgatgat gataattgtc 540 ataaggaaaa tgaatgtact tccttgatta aacttgaatt tatattcaac aattattgtc 600 attgtgtttt atttcacatt atttgttgga tcatgtttat tcatttcatt ttattcatat 660 accccttttc attgttgata acaaaatatg atacacgaat aaattttgaa tgagctgaca 720 cacaaagttt tgaccgatac gaaagcgcat gcatggtgga tgtgctgaaa caagtggcac 780 gatatttatc tgggcgaaat atgcattggc cgagtgttac actaccgcat gtgcagcagg 840 tcggccgtgg tcgcgtcaaa cttcgagtaa ccgacggaga aaaatgactt caacttcatc 900 gaagaagcgt tctaaaaaac tgcaaacctt ctcaggtgat tacaccaaga aatggtcatg 960 cattgttccg tcgaaaagga atacaaacag tgcctgttgt acacattgct catccgattt 1020 tggaattggt catggcggtt cgaacgatat ccaggtaggc ctacatctga agtcggtgaa 1080 gcaccggact gcagcggcgg aggcaagttc caattcccgc agtcatgaca tcgcccagtt 1140 tttcgtcgca aaggacaatt ctgtcacgaa cgccgaagtg aagtttactc aatttttgat 1200 agagcacaac atcgcgtttt cagcagcaga ccacctttca caacttgtca aaaatgcctt 1260 ccctgacagt aaaattgcaa gtaaatacgc gtgccgtcgc tccaaggcta cagcaatcgc 1320 aagaactttg ggacaggaaa caaaaggtaa ataaatattg aaaattgcat tttagattta 1380 aagggaatct actgtcgtgg gaaaagtgac aaaagttatt gtgagcttcc agattaatat 1440 catggcatgc tatttaggaa gaatattata ataaaaaggc ccactgtcaa tgattgctct 1500 taaattgttc tcatacatgt acatgtagtc gtaataataa tatgacaata aacagctgaa 1560 atgtgcgggc cgcacagttg aatgtagtcc catacatgca tttctgtgtg cagtgcatgt 1620 gactctcatc ataattgagt taatttctta ttattttggt cattccaaaa ccttatagca 1680 tacaacaatt cttagttgaa gtgtaatcaa cctttcccaa tcactcagag agtttcttcc 1740 acaattaaat ttcacgacca cgacagtaat ttccctttaa attgaacatg tgaagtacat 1800 aatgggaatg aaagccaggg ctctgtctca aaaagaaatg acaattatta acctaaaaaa 1860 attattgtgt gtagattagt tgtagtctgt agaatttgaa gttagattaa aagtaaagac 1920 actatgatta tcacaattgt tgtgttattg ttaaataaat gctcaggtca gaataacata 1980 attttatatt gcttgcttac ttaatggttg tgtgtatccc ttctcgccat gcccattgta 2040 agcatttaat aaaaaaatta taagaaataa aattcaaatt tacacaacaa tgtccccttt 2100 gacttttttt ggtgcagtca attatcaaga tttagatcat gtcgctacag tacaggtgtt 2160 gatatatgta ctatgtttgc caattgtgcc gataggcttt aactgtgcac aatattcccc 2220 cccccccccc ccactaaacg caagtggtat gcatctgttc tcaatgggaa atgcacatgt 2280 atattaaatt taaaaaaaaa aatttgttct gtcataaaaa ccaatgatca atataattaa 2340 gtttttacct gttaattcct cacttctgta agggagacct tgccctgtgc atgttgaaca 2400 cgttataatg cttagtaaaa acagatatct aatgcatgaa ctagggaatg tgaatatgct 2460 tatccacatt tatcaacaaa ttttatctga cctgatcgtc ataatgtaca tgttttccct 2520 ttttacattg caggggacat catccgcaag atacgtgaga agcccttctc aatttcgaca 2580 gatgggagct ccgatagggg ggcagatgag caactctacc ccatacttgt aagatacttc 2640 gatgatgatg cacaacatgt tgtgaccgtt ctcttagaaa tagcgacaac aaaggggagt 2700 tccacaggga aaaatatctt ccaacttctt gatcaagcac tcacagagaa caaaattcca 2760 tggaaaaatg ttacatgttt ttctgctgac aacgcggctg taatgatggg agtgcacaac 2820 ggggttgctg cttttgtgag agagaagaat cctgaagtgt atgttaatgg ctgcgtatgt 2880 catttgcttc acctagcagc tgagaaaggg gcccagcaac ttccatcaag tccagttgat 2940 ctcctgatac caatcttcta ctacctagag aaatctagca agaggcacaa ggcattccat 3000 gaagtgcagt catgctgtga tgtcaagcaa catgcaattc ttaagcatgt gtgtaccagg 3060 tggttgtcct tggagcaggc cttgaacaga cttattgaac aatgggttcc tctggttgag 3120 ttcttccgga gtgaatctga aacttcatca tcttctgcgc aaaagaagaa gagtgtccag 3180 tcgaagacta cagctaaaaa ggttcaacca caaccccaac cccagaaaaa gaacactgga 3240 aatgccaaag tttctgtgac cagttctaag cctgtgtctg gaaaggcaag cacaagttct 3300 gaatcatcat ctggaacaaa gagaaagatt gaagactcac atcagaatag agggaaacag 3360 ctaaaacctt ctagtagcca tcaagtccat caaccatccc agaagaagag ctctggctat 3420 ataattcccc atattgccaa aacttcaagc tcaaagcctg cattgggaaa atcaagcaca 3480 actcctgcat ctgtgtcaaa ggcatcaacg agtaaaagtt cccctgtggt cacaaaaact 3540 ttgtcttctc atggtacagc tccaagtaca tctgcatttc cctctacttc ttctattggg 3600 aagaaagcca gtgatgtgac caaaaaagac ctccccaaag gaaccaaagt tggatcagga 3660 aaggtgaaaa tgccaccccc aagatcaagt tgggctccat catcacagaa gacaggtcag 3720 gtgtttgcag gcacagagca tgctgtgagc aagacctccc aagaagtccc agcaacgtct 3780 aaggcagctg ctatctatga caaactgaca aatgatgaga ataaactata ttgcttattt 3840 ctccagcaca acattccttt gttcactgta ctgaatttag agctccaaga agaatcaccc 3900 aagattcatg ttctacttga tagacttcag gcctttcttc aaaatgtttt gacaagattt 3960 gttaagccta aagtgctgat ggcatcgtct caagagtgtg actacaaaac aaatgacaat 4020 cagcgtgaag acaacgactt ggtgattggt tctaaagtga gagagttgct tcaaagcgga 4080 aacttcagtg atggccagaa gaggaagttc ttctcatccg tgagacagta ctatatatca 4140 gtctgcaact atgttctgag caaatttccg ttgaaggatc cacttctcat gcatgctaga 4200 gtggccaatc ttgaaaggcg acaggaaacg ccctttgtgt cagtggagta ttttgttcgg 4260 agattccact tcatggaaga tgatattgac acacttgaac tggaatatgc ctcctaccag 4320 agtgatcctt ccgtggacaa gattgatgct tcaaaagcag acttggcatg ggtggcagta 4380 tctcagctca aagatcccac cagtgggcag ttttgctatg ctcatctagt gcaagtcatg 4440 atgctgattc tttcgatatc acacagtaat gcttcagatg agaggctgtt cagcttggtg 4500 aggaagaaca agaccgagtt tagggccagt ttgagtactg caacattgag tgatgttctc 4560 actcagaagg caacatgcca gtccaaagga caaaactgtc atgacatgaa attcagcgat 4620 caactgctaa ccaaatgtaa gggagctgca atggctttct gcaaacagtg ataaactatt 4680 ataaccaaat gtaagggagc tgcaatgtgt ttctgcaaac aagcaagcta cagtgtgact 4740 ggacatttat gatttgcaca tattattaca tgcaattcag tgataaactc ttaaccaaat 4800 gtaagggagc tgcaatgtgt ttctgcaatg tgtttctgca aacaagcaag ctacagtgtg 4860 actggacatt tatgatttgc acatattatg acatgcaatt cagtgataaa ctcttaacca 4920 aatgtaaggg agctgcattg tgtttctgca aacagtgaga aagcaagcaa gcaagcatac 4980 agtgtgactg gacagttatg ttacttaggt aagagttgtt ccattatgtt tgtagagcct 5040 ctatgttaat tgtaaaaacc tgaagtgaat atacacacgt aagtgaaaca gggtaatgat 5100 acatcaatcc tctaataacc attgtttttt ttatagcact taaaatgatg ttataaacag 5160 aatgttcttg tttttacttc aagtcctgtc attcagagtg atgctattac catggtacta 5220 gtagtttgtg ttgtggtgtt gtgtgcagct ctacaatgta cgtgcaaatg cagtcttctt 5280 gatgttgaaa gcgccgcgct tgaaattact gatttccatc caaaattact gatttttagc 5340 tttcagatta ctgattttgg tttcagaggt tggcagctct g 5381 // ID Ingi-2_SPur repbase; DNA; SPU; 3528 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 02-FEB-2010 (Rel. 14.02, Last updated, Version 4) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey2_SP; KW Ingi-2_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3528 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 495-495 (2009). XX RN [2] RP 1-3528 RA Jurka J.; RT "Re-classified as Ingi."; RL Direct Submission to Repbase Update (12-JAN-2010). XX RN [3] RP 1-3528 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to RR (02-FEB-2010). XX DR [1] (Consensus) XX CC The 3' termini are composed by (GAA)n microsatellite, as the same CC as Ingi-1_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 500..3505 FT /product="Ingi-2_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains, and a CCHC zinc-finger FT motif." FT /translation="MATNDNDDQFVAEAQGRTHGSLSGPALSIISSNIEGL FT SGAKQELLADLCITTNCDILCLQETHRGPTRVRPRISGMTLIAERPHDQYG FT SAIFARNGLAVDKSYLSDVNNIEVLSIDLMGITVSSVYKPPQEPFDLPGRA FT TDGRMNVVIGDFNSHSISWGYREMNEDGELVETWADANQLSLIHDAKLPAS FT FNSARWRRGYNPDLIFTSTRIANQCEKVILDPIPHSQHRPIGLKVNAVITP FT RAVPFRRRFNLRKANWEKFAKDFDSYIQDLPATPQNYDTFVELMKKSSRRN FT IPRGCRTSYIQGLTDHSKVMYEDYIEHFQMDPFSEETLESGENLTKEIGES FT RRRKWQEFIQSTDMTHSSRKAWKTIRILGNDYTKAQPRSEVTADQVAHQLL FT LNGRGNPDHHPRRARLPKVPDALSSQDDPGFTRPFTMNDLLAAIKAMKNNK FT AAGLDDILCEQIKQLRPGALNWLLKMFNECLGTNNIPKLWRKSKVIALLKP FT GKDAASPKSYRPISLLCHTYKLFERLILNRIAPFVDEHLIPEQAGFRPGKS FT CTGQLLNLTQFIEDGYESKLITGAAFVDLSAAYDTVNHRILTRKIFELTKD FT VRLTGLIQTLLSNRRYFVVLNGNRSRWRRQKNGLPQGSVLAPLLFNVYTND FT QPIHPNTRSFLYADDLCIATQNQSFVKLEESLSDALAGLIPYYATNHLRAN FT PDKTQISAFHLKNRDANHQLRISWYGKRLKHTPNPVYLGVTLDRSLTYKNH FT IANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCFSAAEYASPVWSR FT SAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPPHVRRLVLSQKEK FT DKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPHNQRMTLWSNHLQ FT TTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCRVLMQRWGLGDEQ FT TACECGQEQTMEHLLVCPLLPEPCTQDDLEAVNCRAKACVDHWTGLV" XX SQ Sequence 3528 BP; 1002 A; 964 C; 770 G; 791 T; 1 other; aggctctgta taagcttggc ttgttagagc tcttgtgagt tgtgtgccgc ggggtttcat 60 atccttaaac tgctggcgaa cagagcaaca agaccaagct ctgtaattgt taggtttctc 120 caatggtagg tttgtctaat aatgccgagt ttgtgccacg gaacctagtc ggacatttcg 180 attatattct ttttatgtca tacgtcttta tctttttttt ttttaaatat tttttatagt 240 ttagtctacc ttgctgatac ctcctcaaaa tatatacgat agactatcat taattctgct 300 gcattaccat atagcttact tagaggttac tgcagatcaa tcacctgtac tgtatctaga 360 ctatagttaa gtgtaggaga acagtaaaaa cagtggggcc attgaaggag cgttcacgtc 420 gcggtccgtc agatgaaaat ctgcgaatcc ttcaaccaca ctacccaagt ttcttttagt 480 aactaccaca accaacacca tggctaccaa tgacaatgat gaccaatttg ttgctgaggc 540 ccagggtcga actcatgggt ccttgtcagg accggccctg agtatcatct catccaacat 600 tgaaggtctt tcaggcgcca aacaagaact cttggctgac ctatgcataa caaccaactg 660 tgacattctc tgcctccagg agacccatcg cgggcctaca cgagttcgcc ctcgtatctc 720 cggaatgacc ctcatcgcag agagaccaca tgaccaatac ggaagtgcaa tctttgcccg 780 taatggtctt gctgtggaca aatcttacct atcagacgtc aataacattg aagtcctttc 840 tattgaccta atgggaatca ccgtaagctc cgtgtacaag ccacctcaag agcctttcga 900 cctgcccggc agagctactg acggcaggat gaatgtggtc attggtgatt tcaacagcca 960 tagcatttcc tggggatata gagaaatgaa cgaagatggt gaactcgttg agacatgggc 1020 agatgctaac cagctgtccc tcattcatga cgctaagctt cctgcctctt tcaacagtgc 1080 aaggtggaga cgtggctaca accctgacct gatatttaca tctaccagga ttgctaacca 1140 gtgcgagaaa gtcattctcg acccaatccc tcactcccag caccgaccga tagggcttaa 1200 ggttaatgca gtcattactc cacgagcagt acccttccga cgtcgtttca acctgaggaa 1260 ggcaaactgg gaaaagtttg ctaaggactt tgactcctac atccaggacc tacctgccac 1320 cccccaaaac tacgacacct ttgtagagtt gatgaagaaa tcgtcaaggc gtaacatccc 1380 ccgaggatgt cgcacaagct acattcaagg cttgacggac cactccaagg tgatgtatga 1440 agactacatc gaacacttcc agatggaccc ctttagtgag gagacactgg aatctggaga 1500 aaatctgacc aaggaaattg gtgaatctag aaggaggaag tggcaggaat tcattcaatc 1560 cactgacatg acacatagca gcaggaaggc atggaaaacg atccggatac tgggcaacga 1620 ctatacaaag gcccaaccaa gatctgaagt cactgccgac caagttgccc atcaactcct 1680 attgaatggt cggggaaacc ctgaccatca ccccagaaga gccagactcc ctaaggtccc 1740 agacgctcta agctctcaag atgacccagg cttcactaga ccgttcacca tgaacgacct 1800 gcttgctgcc atcaaagcaa tgaaaaacaa caaagctgct ggacttgatg acatcctctg 1860 cgagcagatc aaacagctta gaccaggcgc cctcaactgg cttctcaaaa tgttcaacga 1920 atgtttgggc accaacaaca tcccaaagct ctggaggaaa tccaaagtta ttgccctatt 1980 gaagcctggt aaagacgcag ccagtccaaa gagctacagg cctatctccc tactgtgcca 2040 tacatataag ctgttcgagc ggcttatcct caaccgcatc gccccattcg tggatgaaca 2100 tctcattcca gaacaagcag ggtttaggcc aggaaaatca tgcactggcc aactcctaaa 2160 cctcactcag ttcattgagg acgggtatga gagtaagcta atcaccggag ctgctttcgt 2220 tgatctctct gctgcctacg acaccgtgaa ccacagaatc cttaccagga agatctttga 2280 gctgacaaag gacgtgagac tgactggact catccagacg ttgctgtcca atcggcgata 2340 ttttgtggtt ctcaatggga atcgcagcag atggcgcaga cagaaaaatg gcctaccaca 2400 aggaagtgtg ctcgcaccgt tactctttaa cgtgtacacg aacgaccaac cgatccaccc 2460 aaacaccagg agcttcctct acgccgatga tctctgcatc gccacccaga accagtcttt 2520 tgtgaagttg gaggagtccc tcagtgatgc cctggccggt ctcatcccat actatgcgac 2580 caaccacctg agagctaacc ctgataaaac tcagataagc gcattccacc tcaagaacag 2640 ggatgccaac catcaactaa ggatcagctg gtatgggaaa aggctgaagc acactcccaa 2700 cccagtctac ttaggcgtca cactcgatcg ctcccttacc tacaagaacc acattgccaa 2760 cacaaaggca aaagttggag cccgcaacag catcctcaag aagctagcca acaccaactg 2820 ggggactgat gccagaacaa tccggacgac agccctcgcg ctttgcttct ctgctgcgga 2880 gtatgcatca ccagtatgga gtaggtcggc ccatgcaccc aagattgacc cagctctaaa 2940 ttcatcttgc agagcgatca ctggatgcct aaggccaact aaagtagaag acatctacct 3000 gctctgcggt attgcccctc cacacgtcag aaggttggtc ttgtcccaga aagaaaagga 3060 caaacaagaa aacaatccac tccacccact cttcgaacaa cagccagtgg gcaagcggct 3120 caaatccaga cacagctttc tgcactckgt agagcccctt aatactagcc ctcacaacca 3180 aaggatgact ttgtggtcta accaccttca gaccactcca cataaactct ccctcagccc 3240 gaaggaatcc ctcgcaaccg gctccagtga gacttggcct acctggctta gcctcaaccg 3300 cctaagaact ggctacggtc gatgcagagt cctaatgcag aggtggggtc taggagacga 3360 acaaacagca tgtgaatgcg gccaggaaca gacaatggaa cacctgctag tctgcccact 3420 cctgccagag ccatgcaccc aagatgacct ggaagccgtg aattgccgtg ccaaagcctg 3480 tgtggaccac tggacgggac ttgtgtagtg actcgataag aagaagaa 3528 // ID CSP2111 repbase; DNA; SPU; 155 BP. XX AC J01195; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence csp2111. XX KW Repetitive sequence; CSP2111. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-155 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01195; Positions 1 155. XX SQ Sequence 155 BP; 40 A; 45 C; 27 G; 43 T; 0 other; aattcggatt aacctcggct ccttgactga tcagatattt ggtgacatca agatgaccac 60 agccccactg cactacttat agcctattgc gccctctata tagcaaacaa tgcctaatag 120 gtgaccattg gtcacacatg gtcccctttt tcccg 155 // ID Jockey2_SP repbase; DNA; SPU; 2827 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 06-MAR-2009 (Rel. 14.02, Last updated, Version 1) XX DE Jockey-type non-ltr retrotransposon :consensus sequence. XX KW CR1; Non-LTR Retrotransposon; Transposable Element; Jockey2_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-2827 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 495-495 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(121..2109,2004..2825) FT /product="Jockey2_SP_1p" FT /translation="MTLIAERPHDQYGSAIFARNGLAVDKSYLSDVNNIEV FT LSIDLMGITVSSVYKPPQEPFDLPGRATDGRMNVVIGDFNSHSISWGYREM FT NEDGELVETWADANQLSLIHDAKLPASFNSARWRRGYNPDLIFTSTRIANQ FT CEKVVLDPIPHSQHRPIGLKVNAVITPRAVPFRRRFNLRKANWEKFAKDFD FT SYIQDLPATPQNYDTFVELMKKSSRRNIPRGCRTSYIQGLTDHSKVMYEDY FT IEHFQMDPFSEETLESGENLTKEIGESRRRKWQEFIQSTDMTHSSRKAWKT FT IRILGNDYTKAQPRSEVTADQVAHQLLLNGRGNPDHHPRRARLPKVPDALS FT SQDDPGFTRPFTVNDLLAAIKAMKNNKAAGLDDILCEQIKQLRPGALNWLL FT KMFNECLGTNNVPKLWRKSKVIALLKPGKDAASPKSYRPISLLCHTYKLFE FT RLILNRIAPFVDEHLIPEQAGFRPGKSCTGQLLNLTQFIEDGYESKLITGA FT AFVDLSAAYDTVNHRILTRKIFELTKDVRLTGLIQTLLSNRRYFVVLNGNR FT SRWRRQKNGLPQGSVLAPLLFNVYTNDQPIHPNTRSFLYADDLCIATQNQS FT FVKLEESLSDALAGLIPYYATNHLRANPDKTQISAFHLKNRDANHQLRISW FT YGKRLKHTPNIQSTNSDKRIPPQEQGCQPSTKDQLVREKAEAHSQHPVYLG FT VTLDRSLTYKNHIANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCF FT SAAEYASPVWSRSAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPP FT HVRRLVLSQKEKDKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPH FT NQRMTLWSNHLQTTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCR FT VLMQRWGLGDEQTACECGQEQTMEHLLVCPLLP" XX SQ Sequence 2827 BP; 813 A; 813 C; 621 G; 580 T; 0 other; ggtctttcag gcgccaaaca agaactcttg gctgacctat gcataacaac caactgtgac 60 attctctgcc tccaggagac ccatcgcggg cctacacgag ttcgccctcg tatctccgga 120 atgaccctca tcgcagagag accacatgac caatacggaa gtgcaatctt tgcccgtaat 180 ggtcttgctg tggacaaatc ttacctatca gacgtcaata acattgaagt cctttctatt 240 gacctaatgg gaatcaccgt aagctccgtg tacaagccac ctcaagagcc tttcgacctg 300 cccggcagag ctactgacgg caggatgaat gtggtcattg gtgatttcaa cagccatagc 360 atttcctggg gatatagaga aatgaacgaa gatggtgaac tcgttgagac atgggcagat 420 gctaaccagc tgtccctcat tcatgacgct aagcttcctg cctctttcaa cagtgcaagg 480 tggagacgtg gctacaaccc tgacctgata tttacatcta ccaggattgc taaccagtgc 540 gagaaagtcg ttctcgaccc aatccctcac tcccagcacc gaccgatagg gcttaaggtt 600 aatgcagtca ttactccacg agcagtaccc ttccgacgtc gtttcaacct gaggaaggca 660 aactgggaaa agtttgctaa ggactttgac tcctacatcc aggacctacc tgccaccccc 720 caaaactacg acacctttgt agagttgatg aagaaatcgt caaggcgtaa catcccccga 780 ggatgtcgca caagctacat tcaaggcttg acggaccact ccaaggtgat gtatgaagac 840 tacatcgaac acttccagat ggaccccttt agtgaggaga cactggaatc tggagaaaat 900 ctgaccaagg aaattggtga atctagaagg aggaagtggc aggaattcat tcaatccact 960 gacatgacac atagcagcag gaaagcatgg aaaacgatcc ggatactggg caatgactat 1020 acaaaggccc aaccaagatc tgaagtcact gccgaccaag ttgcccatca actcctattg 1080 aatggtcggg gaaaccctga ccatcacccc agaagagcca gactccctaa ggtcccagac 1140 gctctaagct ctcaagatga cccaggcttc actagaccgt tcaccgtgaa cgacctgctt 1200 gctgccatca aagcaatgaa aaacaacaaa gctgctggac ttgatgacat cctctgcgag 1260 cagatcaaac aacttagacc aggcgccctc aactggcttc tcaaaatgtt caacgaatgt 1320 ttgggcacca acaacgtccc aaagctctgg aggaaatcca aagttattgc cctattgaag 1380 cctggtaaag acgcagccag tccaaagagc tacaggccta tctccctact gtgccataca 1440 tataagctgt tcgagcggct tatcctcaac cgcatcgccc cattcgtgga cgaacatctc 1500 attccagaac aagcagggtt taggccagga aaatcatgca ctggccaact cctaaacctc 1560 actcagttca tcgaggacgg gtatgagagt aagctaatca ccggagctgc tttcgttgat 1620 ctctctgctg cctacgacac cgtgaaccac agaatcctta ccaggaagat ctttgagctg 1680 acaaaggacg tgagactgac tggactcatc cagacgttgc tgtccaatcg gcgatatttt 1740 gtggttctca atgggaatcg cagcagatgg cgcagacaga aaaatggcct accacaagga 1800 agtgtgctcg caccgttact ctttaacgtg tacacgaatg accaaccgat ccacccaaac 1860 accaggagct tcctctacgc cgatgatctc tgcatcgcca cccagaacca gtcttttgtg 1920 aagttggagg agtccctcag cgatgccctg gccggtctca tcccatacta cgcgaccaac 1980 cacctgagag ctaaccctga taaaactcag ataagcgcat tccacctcaa gaacagggat 2040 gccaaccatc aactaaggat cagctggtac gggaaaaggc tgaagcacac tcccaacatc 2100 cagtctactt aggcgtcaca ctcgatcgct cccttaccta caagaaccac attgccaaca 2160 caaaggcaaa agttggagcc cgcaacagca tcctcaagaa gctagccaac accaactggg 2220 ggactgatgc cagaacaatc cggacgacag ccctcgcgct ttgcttctct gctgcggagt 2280 atgcatcacc agtatggagt aggtcggccc atgcacccaa gattgaccca gctctaaatt 2340 catcttgcag agcgatcact ggatgcctaa ggccaactaa agtagaagac atctacctgc 2400 tctgcggtat tgcccctcca cacgtcagaa ggttggtctt gtcccagaaa gaaaaggaca 2460 aacaagaaaa caatccactc cacccactct tcgaacaaca gccagtgggc aagcggctca 2520 aatccagaca cagctttctg cactctgtag agcctcttaa tactagccct cacaaccaaa 2580 ggatgacttt gtggtctaac caccttcaga ccactccaca taaactctcc ctcagcccga 2640 aggaatccct cgcaaccggc tccagtgaga cttggcctac ctggcttagc ctcaaccgcc 2700 taagaactgg ctacggtcga tgcagagtcc taatgcagag gtggggtcta ggagacgaac 2760 aaacagcatg tgaatgcggc caggaacaga caatggaaca cctgctagtc tgcccactcc 2820 tgccaga 2827 // ID CSP2112 repbase; DNA; SPU; 257 BP. XX AC J01196; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence csp2112. XX KW Repetitive sequence; CSP2112. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-257 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01196; Positions 1 257. XX SQ Sequence 257 BP; 70 A; 54 C; 61 G; 72 T; 0 other; aattctaaat cctgaaatgt catgcgctct cttatctcac cactggtcaa tagttgaaga 60 ttagcgcata acttttcggc ggcttggagc atggggtcaa aggagagcgg cttgattcca 120 gtccttctct atcacgtccc ataaggaccg gtattcataa tacgagaaga gggttggtat 180 tcataatacg agaagagggt cgctgttcat aatgcaatat cggggtcgtg tcaaattttc 240 aaatttcgag accaccg 257 // ID CSP2108 repbase; DNA; SPU; 312 BP. XX AC J01193; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence. XX KW Repetitive sequence; CSP2108. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-312 RA Scheller H.R., Anderson M.D., Posakony W.J., McAllister B.L., RA Britten J.R. and Davidson H.E.; RT "Repetitive sequences of the sea urchin genome: II. Subfamily RT structure and evolutionary conservation."; RL J. Mol. Biol 149, 15-39 (1981). XX DR GenBank; J01193; Positions 1 312. XX SQ Sequence 312 BP; 79 A; 76 C; 51 G; 106 T; 0 other; ctgacttggt cgacagatct ggaatgagct tcccttggta attgatcata cccaagaacc 60 gttggacatc tttccgacat ttcggtctct caatgttcaa gatagcagac actttctttg 120 gatcacgttg aactccttga tcactgatca agtcaccaat aaatgtgagc ttcttgacat 180 tgaactcgca tttgtctttg ttcaacttga gatacatttt tttcacaatg ctgagaacct 240 ctctcaacct gttatcatgc tcctgttagg tagttcccta tacaatcaca tcatccatca 300 ttgtgttaac tc 312 // ID CSP2137 repbase; DNA; SPU; 226 BP. XX AC J01197; XX DT 28-SEP-1995 (Rel. 1.08, Created) DT 28-SEP-1995 (Rel. 1.08, Last updated, Version 2) XX DE S.purpuratus repetitive sequence csp2137. XX KW piggyBac; DNA transposon; Transposable Element; KW Repetitive sequence; CSP2137. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-226 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "Repetitive sequences of the sea urchin genome. III. Nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149(1), 41-67 (1981). XX DR GenBank; J01197; Positions 1 226. XX SQ Sequence 226 BP; 62 A; 45 C; 30 G; 89 T; 0 other; aattcgtttg ataaaattat ggagagctcg catgatacgt catagagttg ccaatttgtg 60 tttgattgat cacaacttca aaaatcctaa cttcattatt tttaatcgga atttgctcaa 120 actttcactg acttgtttct ctcatttttc tactcctatt taaactaact taatttcagg 180 gtggactttc cctttaaagc ctcgttacga attatttcat tcaccg 226 // ID CSP2096 repbase; DNA; SPU; 203 BP. XX AC J01188; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence csp2096. XX KW Repetitive sequence; CSP2096. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-203 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01188; Positions 1 203. XX SQ Sequence 203 BP; 50 A; 43 C; 50 G; 60 T; 0 other; aattcgggta cgagttggat tgtaggagtg tagtgagtct ttaatgtatt gtggcgagat 60 tccatggaga gcccgataaa caagtaacat aattttgaag tggacccttt tctggacagg 120 tagccagtga agagagcgta atataggcgt aatagaagac attcttggcc ccccccttct 180 ctctctctct ctctctctct ccg 203 // ID SP2109AB repbase; DNA; SPU; 203 BP. XX AC K01648; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus 2109A repeat element. XX KW Repetitive sequence; 2109A repetitive sequence; SP2109AB. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-203 RA Posakony W.J., Flytzanis N.C., Britten J.R. and Davidson H.E.; RT "Interspersed sequence organization and developmental RT representation of cloned poly(A) RNAs from sea urchin eggs."; RL J. Mol. Biol 167, 361-389 (1983). XX DR GenBank; K01648; Positions 1 203. XX SQ Sequence 203 BP; 69 A; 28 C; 38 G; 68 T; 0 other; agcaaaagta gagtaatgtc caagctgagg ccgtgaattt ttctgcaaag catttaacac 60 tgatttaagg cccctctggt ccttatgtat tgattaacta catgtatatt tattcatttg 120 agtagaaaaa aaactgtaaa ataacatgca taagtgatgg acgtctgaat atttaaacat 180 tttgtaaata gtgctagttt gtg 203 // ID Ingi-1_SPur repbase; DNA; SPU; 3144 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 12-JAN-2010 (Rel. 14.02, Last updated, Version 3) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey1_SP; KW Ingi-1_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3144 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 494-494 (2009). XX RN [2] RP 1-3144 RA Jurka J.; RT "Re-classified as Ingi (together with Jockey2_SP)."; RL Direct Submission to RR (12-JAN-2010). XX DR [1] (Consensus) XX CC Originally classified as Jockey. Re-classified as Ingi. XX FH Key Location/Qualifiers FT CDS join(151..2382,2360..3142) FT /product="Jockey1_SP_1p" FT /translation="MAPTDCRRKHASSSGRXVTVMSINTEGFSXAKQQLIG FT KLCKENDCVALCLQETHRGHQHVRPRIPGMKLAIERPHEKYGSAIFVRKDV FT IVDQTSLTEEDNIEVLAVDMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNV FT IIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWK FT KGYNPDLSFTSERISCQTKKXVLEPIPHSQHRPIIVDITAAVVPQRVPLRR FT RFNFRKADWEKFAIDLDEAXSDLDPVPANYDQFVRTVQEISRKHIPRGCRE FT NYIPGLSAESALMYEEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQD FT LIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAH FT KKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHF FT GHNTREWPLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISL FT LCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDG FT FEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRR FT FYVELNGKRSRWRKQKNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADD FT LGIAAQNSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSSFHLRNYN FT AGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKSIKACSKGEGKHVQKVK FT GKVGTRNNLLRKLANSSWGANSSTLRSTALALCYSAAEYACPVWGRSSHAK FT KVDAALNDSCRCITGCLKPTNVDSLHSLAGIAPSDVRRTVASRTERSRQVE FT DTRHPLYSHQPAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHH FT EKLPIPTKEQLPPGHRCDWKTWKSLNRLRTGVGRCEYNMHEWGYADDTDTD FT CECGTSVQSVSHLLRCPLLXDQCCLEDPVAEMRRLFSVQKPGRAFEDTKE" XX SQ Sequence 3144 BP; 923 A; 823 C; 702 G; 677 T; 19 other; tgacgtcaca atagaagact gctgaktgtc tacttatcta agcgtccacg tcgcggggct 60 ggaaactgga catcgtcctg agctaattcc gccaccacca tcatccatcc atctcatcta 120 ctcttaccag caagtaaata ytayctaata atggctccca ctgattgtcg ccggaagcat 180 gcatcctctt caggacggam ggtaacagtg atgtccatca acactgaggg gttttcanca 240 gcgaaacaac aactcattgg aaagctctgc aaagagaacg actgtgtagc attatgtctc 300 caagagaccc acagaggcca ccaacacgtt cgaccgagga ttcctggaat gaagytggct 360 atagagaggc cacatgagaa atatggaagt gctatctttg ttaggaaaga tgtgatcgtc 420 gatcagacct cactgactga agaggataac atagaagtcc ttgctgtcga catggggaaa 480 ctaacagtca cttctgttta taaaccaccg ggatctacat ttgcctttac tgaacctcaa 540 tctttcgact atgaccttgt taatgttatt attggagatt ttaacagcca tagcacctcg 600 tggggatacg aagaaacgaa tgaggatggt gaccttgctg aggcctgggc agaggcacat 660 catcttgacc taatccatga tgctaagctc ccccattcct tcaatagctg tcgatggaag 720 aaaggttata atccagacct atcctttaca agtgaacgaa tatcatgcca aaccaagaaa 780 ngagtcctng agccaatacc acattcacaa cacagaccaa taatcgttga cattactgct 840 gccgtggtac ctcagagagt tcccctacga cgccgtttca attttcgtaa agctgactgg 900 gagaagttcg ccatcgatct agatgaagct mtatctgatc ttgacccagt cccggcaaac 960 tacgaccaat tcgtccggac tgtacaggag atatccagga agcacattcc acgtggatgt 1020 agggaaaact acatacctgg attatcagct gaaagcgcct tgatgtacga ggagtacata 1080 aaactctacg aggaagaccc cttttcagag gaaaccttga gtgcaggtga gctcctcatg 1140 gcagcaatat cagaagaacg gaggaagtcy tggcaagatc tcattgaggg cgttgatatg 1200 acgcacaaca gtaagagagc ttggtctacc attaagaaaa tcagtaacga tcccaagaag 1260 tctacacccc attctaatgt tactgcagat caggttgccc accaacttct cctgaatggc 1320 aaatcggcac acaagaaacg ccacaaaagg aatccttggc cacaggttga cacagaatct 1380 acctggtact ttaacaactt ggaactccag acggctatcg actcccttaa gaacggcaag 1440 gcagctggtc ttgatgacat acgtacagaa cagatcaaac attttgggca caatacacgg 1500 gagtggccgc tctctctgtt cgacaactgc gtaaccctct cccagcttcc taaaatctgg 1560 cggaaagccc gtgtgattgc tatcctcaag ccagggaaag accctaacga agcaaagagc 1620 tacagaccaa tctccctgtt gtgccacctc ttcaagctct ttgagcgcct catcctgaac 1680 agactggggc cagtcacaga acaacacctg ataccagagc aagcaggttt ccggcctgga 1740 agatcgtgca ctggccaagt gctaaatcta acccagcaca tcgaggatgg tttcgagaag 1800 aatgaaccga ctggagttgt gttcgtcgac ctgacagctg cctacgacac tgttaaccac 1860 cgtatacttc tcgacaagct ctataccatg acaaaggact cccatctgac taagcttatc 1920 caaatgctcc tggaaaatag acgcttttat gttgagctca acgggaagcg cagcagatgg 1980 aggaaacaaa agaatggtct acctcagggc agtgtacttg ctcctgtsct mtttaatgtc 2040 tacaccaacg accagccagt gtacccaggg acaagaagct tcatctatgc tgatgacctt 2100 ggcatagcag cccagaattc ycacatagac aagatagaag ccactctttc atcagcccta 2160 gacaacctga cagactacta caacaacaac catctgaagg ctaaccctgc caagacccag 2220 gttagctcgt tccatctccg caactacaat gctgggagga agctgtccct gaaatggaac 2280 gatgtctcat tgaaacactg cgatcaccct gtctaccttg gaatcactct tgaccgaacc 2340 ctttcataca aaagcataaa agcatgttca aaaggtgaag ggtaaagttg ggacaaggaa 2400 caacctccta cggaaactgg caaactcatc ttggggtgcc aattcctcca cgctgaggtc 2460 aactgctctt gcgttgtgyt actctgcagc agaatatgcc tgccctgtat ggggaagatc 2520 atcccacgca aagaaagttg atgcagcact caacgacagc tgcagatgca tcactggctg 2580 cctcaagccc acgaatgtgg acagcttgca ctccctggcc ggcattgctc catccgatgt 2640 ccgcagaaca gttgcaagta ggactgaacg cagcagacaa gttgaggaca cccgccatcc 2700 cctttactcg catcaaccgg cccctacccg cctgaagtca aggaaaagct tccttcatac 2760 agtccagcca ctgtcacaac ctcctcattc aaccagagtg atcttgtggg aagagaaacg 2820 ttgtgaaaac caccaccatg aaaagctacc aatcccgacc aaggaacagc tgccmcctgg 2880 ccatagatgt gattggaaga cgtggaagtc cctcaatagg cttcgcacag gggtggggcg 2940 atgcgaatac aacatgcacg aatggggata cgctgacgac acagacaccg actgcgagtg 3000 tggaacatcc gtgcaatccg tgtcacacyt attaagatgy ccactcctar wtgaccaatg 3060 ctgcctggaa gacccggtgg cagaaatgag aaggctcttc agtgtgcaaa agcctggcag 3120 agcatttgag gacacgaaag aaga 3144 // ID DNA7-1_SP repbase; DNA; SPU; 908 BP. XX AC . XX DT 29-NOV-2005 (Rel. 10.11, Created) DT 02-DEC-2005 (Rel. 10.11, Last updated, Version 1) XX DE Nonautonomous DNA transposon - a consensus sequence. XX KW DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; nonautonomous DNA transposon; DNA7-1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-908 RA Kapitonov V.V. and Jurka J.; RT "DNA7-1_SP, a family of nonautonomous DNA transposon in the sea RT urchin genome."; RL Repbase Reports 5(11), 342-342 (2005). XX DR [1] (Consensus) XX CC The genome contains several hundred copies of DNA7-1_SP. These CC elements are characterized by 7-bp target site duplications CC and 15-bp terminal inverted repeats (one mismatch). CC Classification is unknown (putatively it belongs to the P CC superfamily). XX SQ Sequence 908 BP; 271 A; 199 C; 186 G; 252 T; 0 other; tagggtgtct gatcgcgcac ccgatgttgt gtgctaaaat ccttcccata gagattgcac 60 gcatccctat gcagtctacg tgcattgcgc gaccatgcaa aattggtcaa tgattttatg 120 aaaaaaattg aaattcaaac ctttagggct tgtgatcctg aaggtgaaac tcaataaatg 180 aggtgtcata tgaaagagca ggtttttctc catattcccc aaaggggcgc acccccgaaa 240 ttctaaaaat atcttggtca aaacagcgat tgaaatgttg tttgcatcct agctccaaaa 300 tttgccactt tcctgagctg cgccccccgg gcttatgtcc ggctagacgt aaggaaaata 360 tctatgcact tattttttcg ctagccccaa gagatcactc gccccaacag tttaaaaata 420 cccttcccac tatttttgga atcagctaat tagggaggcg tgagctccgc tcagtccaaa 480 ccatggttac atcgcgtaac atctgcgcgt atagtgaatg aaagtatgga tagccgttcg 540 cgccataaaa cccggaagtg aatacacgtt atagtcaatg gcacatatcg cggagacaac 600 gtggctcaag ctgcaagttg cgcatgaaca tgcgtacgct atgcatacgc ttgcatatcg 660 cgcgatacag ctgtttggct aaatttagca aaacaacata actctgcgtg tacgtctttt 720 tcgtcgattc tgaccaaaat gctatgaata ttgcagcgtt ttggaggggc tgtatctttt 780 gatagaaaca tcggtgagac ttgaaatttg aaatgtatta ttctgattac attttttatt 840 caaatatcaa acaaaaatgg tgaaaaacga tcccaaattg aaaattgaaa aatcgttcag 900 acacccta 908 // ID CSP2137 repbase; DNA; SPU; 226 BP. XX AC J01197; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence csp2137. XX KW Repetitive sequence; CSP2137. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-226 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01197; Positions 1 226. XX SQ Sequence 226 BP; 62 A; 45 C; 30 G; 89 T; 0 other; aattcgtttg ataaaattat ggagagctcg catgatacgt catagagttg ccaatttgtg 60 tttgattgat cacaacttca aaaatcctaa cttcattatt tttaatcgga atttgctcaa 120 actttcactg acttgtttct ctcatttttc tactcctatt taaactaact taatttcagg 180 gtggactttc cctttaaagc ctcgttacga attatttcat tcaccg 226 // ID Ingi-1_SPur repbase; DNA; SPU; 3371 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 19-FEB-2010 (Rel. 14.02, Last updated, Version 6) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey1_SP; KW Ingi-1_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3371 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 494-494 (2009). XX RN [2] RP 1-3371 RA Kapitonov V.V. and Jurka J.; RT "New families of I non-LTR retrotransposons from animals."; RL Repbase Reports 9(7), 1533-1533 (2009). XX RN [3] RP 1-3371 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to Repbase Update (02-FEB-2010). XX DR [1] (Consensus) XX CC Originally classified as Jockey [1]. Re-classified as Ingi [2]. CC The 3' termini are composed by (GAA)n microsatellite, as the same CC as Ingi-2_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 373..3246 FT /product="Ingi-1_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains." FT /translation="MAPTDCRRKHASSSGRKVTVMSINTEGFSSAKQQLIG FT KLCKENDCVALCLQETHRGHQHIRPRIPGMKLAIERPHEKYGSAIFVRKDV FT IIDQTSLTEEDNIEVLAVNMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNV FT IIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWK FT KGYNPDLSFTSERISCQTKKRVLEPIPHSQHRPIIVDITAAVVPQRVPLRR FT RFNFRKADWEKFAIDLDEALSDLDPVPANYDQFVRTVQEISRKHIPRGCRE FT NYIPGXSAESALMYKEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQD FT LIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAH FT KKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHF FT GHNTREWLLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISL FT LCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDG FT FEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRR FT FYVELNGKRSRWRKQRNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADD FT LGIAAQSSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSLFHLRNHN FT AGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKQHVQKVKGKVGTRNNLL FT RKLANSSWGANSSTLRSTALALCYSAAEYACPVWERSSHAKKVDAALNDSC FT RCITGCLKPTNVDSLHTLAGIAPSDVRRTVASRTERSRQVEDTRHPLYSHQ FT PAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHHEKLPIPTKEQ FT LPPGHNVTGRRGSPSIGFAQGWGDANTTCINGDTLMTQTPTASVEHPCNLC FT HTY" XX SQ Sequence 3371 BP; 995 A; 871 C; 735 G; 768 T; 2 other; ctagactttt tgtcatcact gcacctaatt ttatataaaa acattcaaaa actttgcact 60 tttgatacga cttaaatttt tcaaatttgt ttttcctcgc gtattcttgg atatttgttt 120 tgaatattta cgcggagaag cacctgttac acatacgcat agcaacagta cagcgcattg 180 cgcgcacttt tcatcaaaac tgagtgtgct gagctgagtg tgacgtcaca atagaagact 240 ctgctgattg tctacttatc taagcgtcca cgtcgcgggg ctggaaactg gacatcgtcc 300 tgagctaatt ctgccaccac catcatccat ccatctcatc tactcttacc agcaagtaaa 360 tactacctaa taatggctcc cactgattgt cgccggaagc atgcatcctc ttcaggacgg 420 aaggtaacag tgatgtccat caacactgag gggttttcat cagcgaaaca acaactcatt 480 ggaaagctct gcaaagagaa cgactgtgta gcattatgtc tacaagagac ccacagaggc 540 caccaacaca ttcgaccgag gattcctgga atgaagttgg ctatagagag gccacatgag 600 aaatatggaa gtgctatctt tgttaggaaa gatgtgatca tcgatcagac ctcactgact 660 gaagaggata acatagaagt ccttgctgtc aacatgggga aactaacagt cacttctgtt 720 tataaaccgc cgggatctac atttgccttt actgaacctc aatctttcga ctatgacctt 780 gtaaatgtta ttattggaga ttttaacagc catagcacct cgtggggata cgaagaaaca 840 aatgaggatg gtgaccttgc tgaggcctgg gcagaggcac atcatcttga cctaatccat 900 gatgctaagc tcccccattc cttcaatagc tgtcgatgga agaaaggtta taatccagac 960 ctatccttta caagtgaacg aatatcatgc caaaccaaga aacgagtcct agagccaata 1020 ccacattcac aacacagacc aataatcgtt gacattactg ctgctgtggt acctcagaga 1080 gttcccctac gacgccgttt caattttcgt aaagctgact gggagaagtt cgccatcgat 1140 ctagatgaag ctctatctga tcttgaccca gtcccggcaa actacgacca attcgtccgg 1200 actgtacagg agatatccag gaagcacatt ccacgtggat gtagggaaaa ctacatacct 1260 ggawtatcag ctgaaagtgc cttgatgtac aaggagtaca taaaactcta cgaggaagac 1320 cccttttcag aggaaacctt gagtgcaggt gagctcctca tggcagcaat atcagaggaa 1380 cggaggaagt cctggcaaga tctcattgag ggtgttgata tgacgcacaa cagtaagaga 1440 gcttggtcta ccattaagaa aatcagcaac gatcccaaga agtctacacc ccattctaat 1500 gttactgcag atcaggttgc ccaccaactt ctcctgaatg gcaaatcggc acacaagaaa 1560 cgccacaaaa ggaatccttg gccacaggtt gacacagaat ctacctggta ctttaacaac 1620 ttggaactcc agacggctat cgactccctt aagaatggca aggcagctgg tcttgatgac 1680 atacgtacag aacagatcaa acattttggg cacaatacac gggagtggct actctctctg 1740 ttcgacaact gcgtaaccct ctcccagctt cctaaaatct ggcggaaagc ccgtgtgatt 1800 gctatcctca agccagggaa agaccctaac gaagcaaaga gctacagacc aatctccctg 1860 ttgtgccacc tcttcaagct ctttgagcgc ctcatcctga acagactggg gccagtcaca 1920 gaacaacacc tgataccaga gcaagcaggt ttccggcctg gaagatcgtg cactggccaa 1980 gtgctaaatc taacccagca catcgaggat ggtttcgaga agaatgaacc gactggagtt 2040 gtgttcgtcg acctgacagc tgcctacgac actgtgaacc accgtatact tctcgacaag 2100 ctctatacca tgacaaagga ctcccatctg actaagctta tccaaatgct cctggaaaat 2160 agacgctttt atgttgagct caacgggaag cgcagcagat ggaggaaaca aaggaatggt 2220 ctacctcagg gcagtgttct tgctcctgtg ctctttaatg tctacaccaa cgaccagcca 2280 gtgtacccag ggacaagaag cttcatctat gctgatgacc ttggcatagc agcccagagt 2340 tctcacatag acaagataga agccactctt tcatcagccc tagacaacct gacagactac 2400 tacaacaaca accatctgaa ggctaaccct gccaagaccc aggttagctt gttccatctc 2460 cgcaaccaca atgctgggag gaagctgtcc ctgaaatgga acgatgtctc attgaaacac 2520 tgcgatcacc ctgtctacct tggaatcact cttgaccgaa ccctttcata caaacagcat 2580 gttcaaaagg tgaagggtaa agtcgggaca aggaacaacc tcctacgcaa actggcaaac 2640 tcgtcttggg gtgccaattc ctccacgctg aggtcaactg ctcttgcgtt gtgctactct 2700 gcagcagaat atgcctgccc tgtatgggaa agatcatccc atgcaaagaa agttgatgca 2760 gcactcaacg acagctgcag atgcatcact ggctgcctca agcccacgaa tgtggacagc 2820 ttgcacaccc tggccggcat tgctccatcc gatgtccgca gaacagttgc aagtaggact 2880 gaacgcagca gacaagttga ggacacccgc catccccttt actcccatca accggcccct 2940 acccgcctga agtcaaggaa gagcttcctt catacagtcc agccactgtc acaacctcct 3000 cattcaacca gagtgatctt gtgggaagag aaacgttgtg aaaaccacca ccatgaaaag 3060 ctaccaatcc cgaccaagga acagctgcca cctggccata atgtgactgg aagacgtgga 3120 agtccctcaa taggcttcgc acaggggtgg ggcgatgcaa atacaacatg cataaatggg 3180 gatacactga tgacacagac accgactgcg agtgtggaac atccgtgcaa tctatgtcac 3240 acttattaag atgcccactc ctagwtgacc aatgctgcct ggaagaccta gtggcagcaa 3300 atgagaaggc tcttcagtgt gcaaaggcct ggcagagcat ttgagatcag atgatggaca 3360 cgaaagaaga a 3371 // ID Crypton-1_SP repbase; DNA; SPU; 2108 BP. XX AC . XX DT 11-MAR-2008 (Rel. 13.03, Created) DT 24-JUN-2008 (Rel. 13.03, Last updated, Version 2) XX DE Putative Crypton-type transposon. XX KW Crypton; DNA transposon; Transposable Element; Nonautonomous; KW Crypton-1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-2108 RA Jurka J. and Kapitonov V.V.; RT "First Cryptons from invertebrates."; RL Repbase Reports 8(3), 233-233 (2008). XX DR [1] (Consensus) XX CC This element may represent a Crypton-like DNA transposon. Its CC closest currently known relative is Crypton-1_NV. This element is CC present in ~100 copies in the sea urchin genome. Its termini may CC be incomplete. XX FH Key Location/Qualifiers FT CDS 546..1898 FT /product="DIRS-1N_SP_1p" FT /translation="MAELETLPRFQLLDDDQMRDLIDSADSKNTKNSVKFS FT MKIFEDFLQVINTDLDSVNKLSNSELDNVLQKFYAGARRKNGSYYMKKSML FT AIRFGLQRHFLNCNKIDIIKHEDFSNSTRVFKCFSAMLKQEGKGVVTHKPA FT ISAEDMDKIQGSLDLDDPVGLQDKVFMDVMLYFCNRGRENLREMTLDSFDI FT CDEGGKCSITLKDTLTKNNRADKLEKSQGGVMIPTNGPRCPVASFLRYKDK FT LNPQCKSFWQRPANAQAKRELKSNPSSSDQWYCNAPLGKNSIGDKMKTISS FT RAGTKAYTNHCLRATSISTLQNAGFRDREIMSVSGHKAETSLKHYAMTSST FT AKENMSHAIAAAVDPKSVPSSSNIGHGIAAAVDPKSVPSSSTSTGGQRSES FT QELRELNDIFNEITNNPENFPRTCNITTSSHAHVSTSQQVQAPTYHFNNCT FT VNIFNK" XX SQ Sequence 2108 BP; 651 A; 448 C; 438 G; 570 T; 1 other; tttatatacc tcacttaaga aatccagcca tctgattggt cgaaattgca ttcataaact 60 ttaactgttc ctgtaaaatt cccggtaacc atgcttaaaa cagttctaaa atcccaataa 120 ccatggttac cgggaaaata gttcagtctc catggttacc ccataggttt acatgttaaa 180 aaatggtttg agcgatcgag gataccgtac gtgtgcgaag aattggtcgc tatattttac 240 caattttgta actcacccca cgggacatct cgccccagca tcaaagactg ggtcgaaatg 300 tcccgacacg attcatcgat cgagagatac caatgtgtat atgtttgtgc tcattgtaca 360 ttttagacga tatggctgat atttgttcac attctttcgt cctggccgtt aattagcaga 420 ctactggtat ctctcgatcg ataaatcatg tcgggatatc tcgctggggc gagatgtccc 480 gtggggcgag ttagcccgac tccctagtag ctgccagcgc agacgaccga ctgtactagg 540 ccaaaatggc tgaattagaa acgctcccaa gatttcagct tcttgatgat gatcaaatga 600 gagacttgat tgattctgct gacagcaaga acacgaaaaa ttccgttaaa ttctccatga 660 aaatattcga agacttcctg caagttatca acacagacct cgatagcgta aacaagcttt 720 caaattcgga gctggacaat gtactgcaaa agttttacgc tggtgctaga cggaagaacg 780 gaagttatta catgaagaag tcaatgttag ctattagatt cggacttcag cgtcatttcc 840 tcaattgtaa caagatagat atcatcaagc atgaagattt ttccaactcg acgagagttt 900 ttaagtgttt ttcagcaatg cttaaacagg aaggaaaggg agttgtaact cacaaaccag 960 ctatctcagc agaagacatg gacaaaatcc aaggttcgct tgatttggat gatcctgtgg 1020 gtcttcagga caaggtattt atggacgtaa tgttgtactt ttgcaatcgg ggtagagaga 1080 atttgcgtga aatgacactt gacagctttg acatttgtga tgaaggggga aaatgctcca 1140 taactctgaa agatacactc acaaaaaaca accgtgcaga taaactagag aaaagccaag 1200 gtggtgtcat gattccaact aatggtccac gatgtcctgt tgcctccttc ttacgctaca 1260 aagataaatt gaatccacaa tgtaagagtt tttggcagag accggcaaat gcacaggcca 1320 agcgtgagtt gaaatccaat ccatcttctt ctgatcaatg gtactgtaat gcacccctag 1380 ggaaaaacag catcggagac aaaatgaaaa caatttcatc tcgtgcaggt accaaggctt 1440 acaccaacca ttgcctaagg gcaaccagca tcagtaccct acaaaatgct gggttcagag 1500 acagagagat catgagtgtc tccggacaca aggcggagac cagtctcaaa cactatgcta 1560 tgaccagcag tacagcaaaa gaaaacatga gtcatgctat cgcggcagcc gttgatccga 1620 aatcagtacc atcgtcatca aacataggtc atggtatcgc ggcagctgtt gatccgaaat 1680 cagtaccatc gtcatcgaca tctactggtg gtcagcgtag tgaaagccag gaactgcggg 1740 aactaaatga cattttcaat gagatcacaa ataacccaga gaacttccca cgcacatgca 1800 acatcactac aagtagccat gcccatgttt ctactagtca gcaggtgcaa gcccccacat 1860 atcattttaa caactgtact gtaaacattt ttaacaaata gagttatttt ataccagttc 1920 taccagtgag ttattttcta cggagttcta cyattagagt tattttctac ggatttctac 1980 cagttgagtt attttctacg gagttctacc agttgattgg taagttgact cttcggtata 2040 taaaagtatt aatgactgct ttaatattcg agaaatagtt gtttttatac gctctcggga 2100 aggttaca 2108 // ID Ingi-1_SPur repbase; DNA; SPU; 3371 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 03-FEB-2010 (Rel. 14.02, Last updated, Version 5) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey1_SP; KW Ingi-1_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3371 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 494-494 (2009). XX RN [2] RP 1-3371 RA Kojima K. and Jurka J.; RT "Consensus update."; RL Direct Submission to Repbase Update (02-FEB-2010). XX RN [3] RP 1-3371 RA Jurka J.; RT "Re-classified as Ingi (together with Jockey2_SP)."; RL Direct Submission to RR (03-FEB-2010). XX DR [1] (Consensus) XX CC Originally classified as Jockey. Re-classified as Ingi. The 3' CC termini are composed by (GAA)n microsatellite, as the same as CC Ingi-2_SPur and Ingi-1_BF. XX FH Key Location/Qualifiers FT CDS 373..3246 FT /product="Ingi-1_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains." FT /translation="MAPTDCRRKHASSSGRKVTVMSINTEGFSSAKQQLIG FT KLCKENDCVALCLQETHRGHQHIRPRIPGMKLAIERPHEKYGSAIFVRKDV FT IIDQTSLTEEDNIEVLAVNMGKLTVTSVYKPPGSTFAFTEPQSFDYDLVNV FT IIGDFNSHSTSWGYEETNEDGDLAEAWAEAHHLDLIHDAKLPHSFNSCRWK FT KGYNPDLSFTSERISCQTKKRVLEPIPHSQHRPIIVDITAAVVPQRVPLRR FT RFNFRKADWEKFAIDLDEALSDLDPVPANYDQFVRTVQEISRKHIPRGCRE FT NYIPGXSAESALMYKEYIKLYEEDPFSEETLSAGELLMAAISEERRKSWQD FT LIEGVDMTHNSKRAWSTIKKISNDPKKSTPHSNVTADQVAHQLLLNGKSAH FT KKRHKRNPWPQVDTESTWYFNNLELQTAIDSLKNGKAAGLDDIRTEQIKHF FT GHNTREWLLSLFDNCVTLSQLPKIWRKARVIAILKPGKDPNEAKSYRPISL FT LCHLFKLFERLILNRLGPVTEQHLIPEQAGFRPGRSCTGQVLNLTQHIEDG FT FEKNEPTGVVFVDLTAAYDTVNHRILLDKLYTMTKDSHLTKLIQMLLENRR FT FYVELNGKRSRWRKQRNGLPQGSVLAPVLFNVYTNDQPVYPGTRSFIYADD FT LGIAAQSSHIDKIEATLSSALDNLTDYYNNNHLKANPAKTQVSLFHLRNHN FT AGRKLSLKWNDVSLKHCDHPVYLGITLDRTLSYKQHVQKVKGKVGTRNNLL FT RKLANSSWGANSSTLRSTALALCYSAAEYACPVWERSSHAKKVDAALNDSC FT RCITGCLKPTNVDSLHTLAGIAPSDVRRTVASRTERSRQVEDTRHPLYSHQ FT PAPTRLKSRKSFLHTVQPLSQPPHSTRVILWEEKRCENHHHEKLPIPTKEQ FT LPPGHNVTGRRGSPSIGFAQGWGDANTTCINGDTLMTQTPTASVEHPCNLC FT HTY" XX SQ Sequence 3371 BP; 995 A; 871 C; 735 G; 768 T; 2 other; ctagactttt tgtcatcact gcacctaatt ttatataaaa acattcaaaa actttgcact 60 tttgatacga cttaaatttt tcaaatttgt ttttcctcgc gtattcttgg atatttgttt 120 tgaatattta cgcggagaag cacctgttac acatacgcat agcaacagta cagcgcattg 180 cgcgcacttt tcatcaaaac tgagtgtgct gagctgagtg tgacgtcaca atagaagact 240 ctgctgattg tctacttatc taagcgtcca cgtcgcgggg ctggaaactg gacatcgtcc 300 tgagctaatt ctgccaccac catcatccat ccatctcatc tactcttacc agcaagtaaa 360 tactacctaa taatggctcc cactgattgt cgccggaagc atgcatcctc ttcaggacgg 420 aaggtaacag tgatgtccat caacactgag gggttttcat cagcgaaaca acaactcatt 480 ggaaagctct gcaaagagaa cgactgtgta gcattatgtc tacaagagac ccacagaggc 540 caccaacaca ttcgaccgag gattcctgga atgaagttgg ctatagagag gccacatgag 600 aaatatggaa gtgctatctt tgttaggaaa gatgtgatca tcgatcagac ctcactgact 660 gaagaggata acatagaagt ccttgctgtc aacatgggga aactaacagt cacttctgtt 720 tataaaccgc cgggatctac atttgccttt actgaacctc aatctttcga ctatgacctt 780 gtaaatgtta ttattggaga ttttaacagc catagcacct cgtggggata cgaagaaaca 840 aatgaggatg gtgaccttgc tgaggcctgg gcagaggcac atcatcttga cctaatccat 900 gatgctaagc tcccccattc cttcaatagc tgtcgatgga agaaaggtta taatccagac 960 ctatccttta caagtgaacg aatatcatgc caaaccaaga aacgagtcct agagccaata 1020 ccacattcac aacacagacc aataatcgtt gacattactg ctgctgtggt acctcagaga 1080 gttcccctac gacgccgttt caattttcgt aaagctgact gggagaagtt cgccatcgat 1140 ctagatgaag ctctatctga tcttgaccca gtcccggcaa actacgacca attcgtccgg 1200 actgtacagg agatatccag gaagcacatt ccacgtggat gtagggaaaa ctacatacct 1260 ggawtatcag ctgaaagtgc cttgatgtac aaggagtaca taaaactcta cgaggaagac 1320 cccttttcag aggaaacctt gagtgcaggt gagctcctca tggcagcaat atcagaggaa 1380 cggaggaagt cctggcaaga tctcattgag ggtgttgata tgacgcacaa cagtaagaga 1440 gcttggtcta ccattaagaa aatcagcaac gatcccaaga agtctacacc ccattctaat 1500 gttactgcag atcaggttgc ccaccaactt ctcctgaatg gcaaatcggc acacaagaaa 1560 cgccacaaaa ggaatccttg gccacaggtt gacacagaat ctacctggta ctttaacaac 1620 ttggaactcc agacggctat cgactccctt aagaatggca aggcagctgg tcttgatgac 1680 atacgtacag aacagatcaa acattttggg cacaatacac gggagtggct actctctctg 1740 ttcgacaact gcgtaaccct ctcccagctt cctaaaatct ggcggaaagc ccgtgtgatt 1800 gctatcctca agccagggaa agaccctaac gaagcaaaga gctacagacc aatctccctg 1860 ttgtgccacc tcttcaagct ctttgagcgc ctcatcctga acagactggg gccagtcaca 1920 gaacaacacc tgataccaga gcaagcaggt ttccggcctg gaagatcgtg cactggccaa 1980 gtgctaaatc taacccagca catcgaggat ggtttcgaga agaatgaacc gactggagtt 2040 gtgttcgtcg acctgacagc tgcctacgac actgtgaacc accgtatact tctcgacaag 2100 ctctatacca tgacaaagga ctcccatctg actaagctta tccaaatgct cctggaaaat 2160 agacgctttt atgttgagct caacgggaag cgcagcagat ggaggaaaca aaggaatggt 2220 ctacctcagg gcagtgttct tgctcctgtg ctctttaatg tctacaccaa cgaccagcca 2280 gtgtacccag ggacaagaag cttcatctat gctgatgacc ttggcatagc agcccagagt 2340 tctcacatag acaagataga agccactctt tcatcagccc tagacaacct gacagactac 2400 tacaacaaca accatctgaa ggctaaccct gccaagaccc aggttagctt gttccatctc 2460 cgcaaccaca atgctgggag gaagctgtcc ctgaaatgga acgatgtctc attgaaacac 2520 tgcgatcacc ctgtctacct tggaatcact cttgaccgaa ccctttcata caaacagcat 2580 gttcaaaagg tgaagggtaa agtcgggaca aggaacaacc tcctacgcaa actggcaaac 2640 tcgtcttggg gtgccaattc ctccacgctg aggtcaactg ctcttgcgtt gtgctactct 2700 gcagcagaat atgcctgccc tgtatgggaa agatcatccc atgcaaagaa agttgatgca 2760 gcactcaacg acagctgcag atgcatcact ggctgcctca agcccacgaa tgtggacagc 2820 ttgcacaccc tggccggcat tgctccatcc gatgtccgca gaacagttgc aagtaggact 2880 gaacgcagca gacaagttga ggacacccgc catccccttt actcccatca accggcccct 2940 acccgcctga agtcaaggaa gagcttcctt catacagtcc agccactgtc acaacctcct 3000 cattcaacca gagtgatctt gtgggaagag aaacgttgtg aaaaccacca ccatgaaaag 3060 ctaccaatcc cgaccaagga acagctgcca cctggccata atgtgactgg aagacgtgga 3120 agtccctcaa taggcttcgc acaggggtgg ggcgatgcaa atacaacatg cataaatggg 3180 gatacactga tgacacagac accgactgcg agtgtggaac atccgtgcaa tctatgtcac 3240 acttattaag atgcccactc ctagwtgacc aatgctgcct ggaagaccta gtggcagcaa 3300 atgagaaggc tcttcagtgt gcaaaggcct ggcagagcat ttgagatcag atgatggaca 3360 cgaaagaaga a 3371 // ID DIRS-2_SP repbase; DNA; SPU; 3995 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 09-MAR-2009 (Rel. 14.02, Last updated, Version 1) XX DE DIRS-like LTR retrotransposon family - a consensus. XX KW DIRS; LTR Retrotransposon; Transposable Element; Nonautonomous; KW reverse transcriptase RNase H; phage integrase; DIRS-2_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3995 RA Jurka J.; RT "Families of DIRS-like retrotransposons from sea urchin."; RL Repbase Reports 9(2), 491-491 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 217..1521 FT /product="DIRS-2_SP_1p" FT /translation="MSTSKKKMSEGDKSGSAERERAPGKANENVPSHPAKP FT GAGVSLACHPEPKRSTVPTQQKASTSLTTPKKCSSKKKHVEPNPEIESLKE FT RLNHFEGLLTKVVDALPKQTFTSTSSENPHFQREGDNVFTTADEFWDNHDH FT DMAAGSSGPLQADYGGNPGEEHGGIPGEEPAGFGLDSDDAPVPSFAAKFAV FT PTGVGKPLDSELANSASYLMGHNLEEKTIEETATKYPCPANCILMDAPKVN FT TAIWENLPAETRSRDLKLQRIQKALTKGIGAFVQTLDSHNMSDTQQDALAL FT LCNANFEMNCMRKDMIRPDMNKNYTHLCKPANPVTKLLFGDELGKKVKDLQ FT DQHKAAAGVMRGAANFPKPSYHPYRRYTEAAKRQARDAGWFSNTARHNPGA FT GNMNTNRPFLGRRPSWRGRPAPHTQTPQTGQRRPFRGGKK*" FT CDS 1947..3506 FT /product="DIRS-2_SP_2p" FT /translation="MDNINSAVLLLSPDCFMASLDLRDAYYSVPIHPESRK FT YLRFIWEGQLWQYKALPNGLSSAPRLFTKLLKPAFASLHNAGHVVLGYLDD FT TLIIGRSHRQATKAVTATSELLSELGFIIHPTKSVIEPVQEIKFLGFVLNS FT IDMTVTLPSDKKEELKETCTALLENATPSIRQVARVIGKLVAAFPAAQYGL FT LHYRELERGKIVSLRLNRGHFDRPMKLLDKARRELLWWIGHIDSSFRPINR FT RNPDLELRSDASGAGWGATNMTTHTGGRWNSQEAVIAKGNEINYLETLAAG FT LALKSFCSNMSHKHVLLRLDNTTAVAYVNAMGGVKSPHCNEAATHIWNWCI FT ERDIWITAAHLAGRDNVEADTMSRKFNDRTEWMLNEREFERIAKHFGIPDI FT DLFASRLNAQVSTYVSWRPDPHALAVDAFTLDWRNLNFYAFPPFCLVPKCI FT QKIMADKAVGLLVVPNWPTQAWFPLLKDMIIGEPLFLPKSEKLLRQPVSNL FT SHPLSNLDLLCCRLGAAATDNKA*" XX SQ Sequence 3995 BP; 1150 A; 918 C; 913 G; 1014 T; 0 other; tatgcatttt atttcgtaag tctcgacgga gactacgtga gaagcccgct ctagcatgta 60 agtcaattcg ttcctcgcgt ggtcaatgat tgcaggaaac tacaatcgac tcgtcaatct 120 atcgattttt cgtcagtttt tctgggtttt agttagcccc ttccaatttg gattattttc 180 tggattatac tgattctgct agacaacttt caattcatgt ctacttctaa gaagaaaatg 240 tcagaaggag ataaatcggg ctcggccgag cgggagcgtg ctcccggcaa agcaaacgag 300 aacgtgccgt cgcatccagc caagcctggt gcgggggttt cactagcctg tcatcctgag 360 cccaagcgct cgacagtgcc gactcagcaa aaagcgtcta cctcactaac tacgccgaaa 420 aaatgtagtt ccaagaaaaa gcatgtggaa ccaaatcccg agatcgaatc gctcaaagag 480 cggctgaatc actttgaggg actcctcact aaagtggtag atgcattgcc caaacagaca 540 tttacgtcta cgtcttcaga aaatccgcat tttcagcggg aaggcgacaa cgttttcaca 600 acggcggatg aattttggga taaccatgat catgacatgg cagcgggtag cagcgggccg 660 ctgcaagccg attacggggg aaaccccggt gaggaacacg gaggaatccc cggtgaggaa 720 cccgctggat ttgggcttga cagcgacgac gctccggtcc cctccttcgc cgcaaaattt 780 gcagtgccaa caggcgtggg gaagccgctc gattcagagc tagcaaactc cgcatcttat 840 ttgatgggac ataatttgga ggaaaaaaca attgaagaaa cagctaccaa gtacccatgc 900 cctgcaaatt gcattttgat ggacgctcca aaagtgaata ccgcaatttg ggagaatctc 960 cccgccgaga ctcgtagcag agatttgaaa cttcagcgga ttcaaaaagc actgacaaag 1020 ggaatcggag ctttcgtcca aaccttggac tctcacaaca tgtctgatac gcaacaggat 1080 gctctcgcac tcctctgtaa tgcaaacttt gaaatgaact gcatgagaaa agacatgatt 1140 agaccagaca tgaataagaa ctatactcat ctttgcaagc cggctaaccc ggtcacaaag 1200 ctcctgttcg gggatgaact gggcaaaaag gtcaaagacc ttcaggacca acataaggcg 1260 gctgcaggtg ttatgagagg tgccgcaaat tttccaaaac ccagctacca tccttacagg 1320 agatatacag aggctgcaaa acgtcaggcc cgagatgctg gttggttttc caacacagca 1380 agacacaacc ctggagcggg taacatgaac actaacaggc cttttttagg gcgccgcccg 1440 tcgtggaggg gcagaccagc cccacacact caaacacccc agacgggcca acgcaggcct 1500 ttccgaggag ggaaaaagta gtcccagacg ctaaacaggc acctgactcc agtgatcagg 1560 tgagtcaaaa ttgttcttct atttctagtg aatacacact gcctgtcgga ggtcgaataa 1620 agtcttttca tgataaatgg cgtgcaattt ccaatgatcc atacattttg agtgctgttc 1680 aaggctacaa aattgagttt gatccggctc gatttccccc ctcgagggag aaaccttttc 1740 atacattcaa gcgtaatgct ttagagtcga gacaaattag ctcagagctt ctgagtctcg 1800 agacaaaaaa tgtgatagaa cgctgtagtc attcacaagg agaatttatc tctaacatct 1860 ttaccagacc caaaaagagt gggggtcttc gactaattct tgacttgtct gaattgaata 1920 aaagcgtagc ctatcagcac ttcaagatgg ataacattaa ttcagcagtt ttactgctat 1980 cgccagattg tttcatggct tctctcgacc tccgagatgc atactattca gtaccaattc 2040 acccagagtc gcgcaaatac ttgcgtttca tctgggaagg acagttatgg caatataaag 2100 cactcccaaa tgggcttagc tctgctcctc gcctattcac caaactgctg aaaccggcct 2160 ttgcctcact acacaatgca ggccatgttg tactaggcta tttagatgat acccttatta 2220 tcggtaggtc tcacagacag gccacaaagg cggttacagc tacctcagaa ctgctctctg 2280 aattggggtt cattattcat cccactaaat cggtgataga accggttcaa gaaatcaaat 2340 tccttgggtt tgtgcttaac tctattgaca tgaccgtgac cttgccttca gataagaagg 2400 aagaactaaa ggaaacatgt acagcattac ttgaaaatgc cactccctcc attaggcaag 2460 ttgcaagggt tataggaaaa ctagttgcag cttttccggc agctcaatat gggcttttgc 2520 attatcgcga actagaaaga ggaaagatag tttcattgag actaaatagg ggccactttg 2580 ataggcccat gaaactcttg gacaaagcta gaagggaact actttggtgg attggtcata 2640 ttgactcttc ttttcggccg ataaaccgta gaaaccctga tttggaattg cgctcagacg 2700 ccagtggggc aggatggggt gcaactaaca tgaccaccca tacggggggt aggtggaaca 2760 gtcaagaggc agtgatagcg aagggtaatg aaattaatta tttagagact cttgctgctg 2820 gcctggcact taaatcgttc tgttccaata tgtctcataa gcatgtcctt ttacggcttg 2880 acaataccac cgcggtagcg tatgtcaatg caatgggggg cgtgaaatcc ccacattgta 2940 atgaggctgc cacacacata tggaattggt gtatagaaag ggacatttgg ataacagcag 3000 cacatttagc gggccgggat aacgttgaag cagacactat gtcccgtaaa ttcaatgata 3060 ggacagaatg gatgctcaat gaaagggagt ttgaacgcat tgctaaacat ttcggtatcc 3120 ctgacataga cctgtttgcc tctaggctta atgcacaggt gtctacttat gtttcatgga 3180 gaccagatcc ccatgccttg gcagtggatg cgttcacact agattggaga aatctgaatt 3240 tctatgcctt ccctcctttc tgtcttgtcc caaaatgcat tcaaaaaatt atggccgata 3300 aggcagtagg cttactagta gtcccgaatt ggcctacaca ggcttggttc cctctcttga 3360 aggatatgat tattggagaa cctttgttcc tacccaaaag tgagaaactt ctcagacagc 3420 ctgtgtcaaa cctctctcat cctttgtcta atcttgatct tctttgttgc aggcttggag 3480 ctgctgctac cgacaacaag gcctgagcgc aaaaactgtt gatatcatct ctgcatcttg 3540 gaaggactca acgaaaagac aatataaagt gtacataaag aaatgggagt cattttgtaa 3600 gcagaggaat ttaaacaaac tcaagacaaa agctgagaat gtgttagaat tcttaagtga 3660 tttgttctat aatggcaatg ctggctatag tgtcattaac acggcaagga gtgcattggc 3720 ctccttctta actctggaga atgattctca tacagttgga tcgcacacaa ctattagccg 3780 tttcatgagg ggagtttttc atcttaggcc cccagtttct agatatacca agacttggga 3840 tgttggaatt gtactgaact acttacggga gctatatcca gcaaccaagc tcccgcttaa 3900 ggatttgaca cacaagctgg ttatgcttct agcacttact tcagcacaac gagttcaaac 3960 attataccat atgaacttgg acaagatgaa tttga 3995 // ID Gypsy13-I_SP repbase; DNA; SPU; 10823 BP. XX AC AAGJ02032721.1; XX DT 06-APR-2008 (Rel. 13.04, Created) DT 06-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from sea urchin: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13SP; KW Gypsy13-I_SP; Gypsy13-LTR_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-10823 RA Kohany O. and Jurka J.; RT "LTR retrotransposons from sea urchin."; RL Repbase Reports 8(4), 487-487 (2008). XX DR Genome; AAGJ02032721.1; Positions 12684 23506. XX CC Positions [4578-5036] - Integrase core CC 'TAGTA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 1476..5498 FT /product="Gypsy13-I_SP_1p" FT /translation="MHYTVHDYRCSVNLCLVSLAMNLPQFERFPVHEDPTN FT VGVRWEKYMKRMENFFTAFQITDDAQKRALLLHYAGPEVSDIFDTLPGTGT FT DFKGAKDALDKHFSPALNVEYERFVFRQCKQSTDETVEQYHLRLQQLSATC FT KFANTSSEVKSQIIMGCTSSKLRRYALREEVTLQKLLMSAKTFEQADRHAT FT AIEANSQDAVQAVKYQPAPAPATNTNRFQQSRNRPSRSSTKCRNCGGAFPH FT KQDKPCPAKGKQCHSCGKMNHFAKYCRSKPCTPQKTIQASTHTSAQSTVDD FT TTHDPDGDAYAFQFNINSKKGNKPMVMVSVDDNEPLSALIDTGSSVMMMSN FT ETFSRLRSKPHLVTPSIPVYAYGSSTPLDVIGTFHATVRYKSKSTKAKVFV FT TSHNGDTLLDITTATDLDLIALTYNLQPEQTYADRFSGIGKLANYKCHLHV FT DKSVQPVAVPHRRIPFHLRKQVESELDKLQKLDVIEPVSHTPTPWVSPITI FT VQKRNREDIRICVDMRNVNKAVIRERHVMPTVDDLISALNGATTFSKMDLN FT SGYHQLELDEDSRQYTVFSTHAGLYRYKRLNFGVSSASEIFQHAIQATLHD FT LPGVLNISDDILVFGTNKAEHNARLEAVLKRLCEVNLTLNQSKCVFNTDHV FT EYFGHVFSAKGISPDPKKVEAIQSMPAPQNVSEVRSFLGMVNYCARFIPGL FT ASVSAPLRHLTKADSEWEWGTSQADAFAQIKQRVSQSCTMAYFNPASKTEL FT IVDASPHGLGALLVQHDDHDNTVPVALASRALTEVEQRYSQTEREALAITW FT AIIHFHVYLYGGSFVVTTDHKPLVTLFNSPTAKPPLRLERWILKLQPYDFN FT VQYRPGKHNPADYMSRHLLSTEMSSSDNECLAEAHVSFVAGHAVPKTTTLS FT DITAATKQDPVLQVVIDALVNDNWKDVLAHATDTKSELQSLFNVRDELTVS FT NERDFLLRGNRIVIPQSLRQQIIDIAHEGHQGITKTKSLLREKVWFPSIDR FT MTEKTVRDCLTCQTNTIEHSKEPLLMSPLPKKPWSEISVDFADLPTGEHLL FT VVIDDYSRFPEVEIVSSTSARQVIPKLDRIFSSFGVPDVVRSDNGPPFNGR FT EFADFARYLGFQHRRVTPRWPQANGEVERFMKTLKKAYRSAIAENRSWKQE FT LYKFLRNYRATPHSTTGVPPATLLFGRAVRTRLPEHASSDHQPLDGSLRSR FT DHAKKERMKTYADSRGTTRSTEIKDGDTVLVRRDGLVPKHQSPYLPQSYTV FT IRKRGTRITARCGNHYITRNSSRFKRYCGPLPRSAPDDDEIDFDIALDARD FT VPQPPRLAQPRRNPQRNRHPPIRLRDFVS" XX SQ Sequence 10823 BP; 3206 A; 2244 C; 1990 G; 3383 T; 0 other; atggcgacga gatggcgagg gtagtgttca cagaccctct agattcaaac ccaggaccaa 60 aatccaattg aaaccagttg aaatctccaa ctggtttcaa ttggtttcaa ctggtttcaa 120 ttggtttcaa ttggtttcaa ttggaataga aaatttccag ttgaaaccaa ttgccgaact 180 ggaaaatatt gttatgggta ctcatttcca gttcaaacca ataagaagtg caactggaac 240 cagtaaggta atttttccag tttctcaatt ggttccagtt agaagtcatt tccagttacc 300 caactggttc cagttagcat tcatttccag ttagaagtca tttccagtta cccaactggt 360 tccagttaga attcatttcc agttacccaa ctggttccag ttagaattca tttccagtaa 420 cccaactggt tccagttagc attcatttcc agttagaagt catttccagt tacccaactg 480 gttccagtta gaagtcattt ccagttaccc aactggttcc agttagaatt tatttccagt 540 tacccaactg gttccagtta gaaatcattt ccagttaccc aactggttcc agttagcatt 600 catttccagt tagaagtcat ttccagttac ccaactggtt ccagttagaa ttcatttcca 660 gttacccaac tggttccagt tagcattcat ttccagttag aaataatttc cagttaccca 720 actggttcca gttagaattc atttccagtt acccaattgg ttccaattgg aaatatttcc 780 agttacccaa ctggatccaa ttgaaaccag ttaatttgca tattatatgc ttgtgtgcag 840 atcaatgttt tatgtaattt attttgattt acaatgtact tattaattaa ttttcatttg 900 caagtaatgc atttgtttta gataaatata aagattaatt agcaatgata agcatgttca 960 ttagtaacat atttttgtaa ttacacagat taaaagttga tgagtaaaac actaaccatg 1020 tacaaaatac atcaattaca aacatatata atggcaatgc cttccttgtt aagtatatta 1080 tatggtctgc atattataat gccctttaca ttgtacttaa tgcagacaca tataacaatg 1140 tttctgtgtt gacatgagcg ataattagtg caagagctaa ttaacttata actaattaag 1200 tttatgccaa ttactgtaag tttcaattgg atccaattga aaccaattga aaccagttga 1260 aaccagttgg caactggttt caattggttt tgctccaatt ggtttcaact ggattttggt 1320 cctgggaacc cactgctagt ttggagttgg actggatgtt attgttaaca gttttagcta 1380 cattgacaga cttttcgcat gcaacgagtg tatcgtctgc acgcagtgct cctacatgat 1440 gtcgtgcagt gaacgtgagt gtgcagtatc agcctatgca ttataccgta catgattacc 1500 gctgttctgt gaacttgtgc ctagtatcat tagccatgaa tctgcctcaa ttcgaacgct 1560 ttccagttca tgaggatccc accaatgttg gtgtcaggtg ggaaaagtac atgaagcgga 1620 tggagaattt cttcactgcc ttccagatca cagatgatgc tcagaagaga gcattgttgt 1680 tacactatgc tggtccagag gtttcggata tctttgatac actcccaggg acaggtacag 1740 attttaaagg tgctaaagat gcacttgaca agcatttctc tccagctctt aacgtcgagt 1800 atgaacgctt tgtttttcgc caatgtaaac aatcaacaga tgaaaccgtt gaacaatacc 1860 atctcagact tcaacaactc tctgcaactt gtaagtttgc aaacaccagt agtgaagtca 1920 agtcccaaat catcatgggg tgtacgtcaa gtaaactccg cagatacgcc ctgcgggagg 1980 aggtaacctt gcagaaactc ctcatgtcgg cgaaaacttt cgaacaagca gatcgacatg 2040 ccactgctat agaagctaat tctcaagatg cagtccaagc tgtgaaatat caaccagcac 2100 ctgctccagc tacaaataca aaccgttttc aacaatctcg caatcgtcca tctagatcct 2160 ccactaagtg tcgcaactgt ggtggggcat ttcctcacaa gcaggacaaa ccatgcccgg 2220 caaaaggtaa acagtgccat tcgtgcggga aaatgaacca tttcgccaaa tattgccgat 2280 ctaaaccttg taccccgcaa aagacgatcc aagcttctac acatacttcg gcacagtcta 2340 cggtagacga caccactcat gaccctgatg gcgacgctta tgcctttcaa tttaacatca 2400 actcgaaaaa gggcaataaa ccaatggtga tggttagtgt tgatgataat gagccccttt 2460 cagcactgat tgacactggt tcttcggtga tgatgatgag caatgaaaca ttcagtcgtc 2520 ttaggtccaa gcctcatctc gtcacacctt ccatcccagt gtatgcttat ggtagctcta 2580 ctcctcttga tgtgattggg accttccatg caactgtcag atacaagtca aaatcgacga 2640 aagctaaagt ctttgttacc tctcacaatg gagacacgct tttagacatc accacggcca 2700 cagacctaga cctcattgct ctcacgtata acttgcaacc agagcagaca tatgcagacc 2760 gtttcagtgg gattggtaag ctagctaact acaagtgtca ccttcatgtc gacaagtcgg 2820 tgcagcctgt tgctgttccg caccgacgga tcccgtttca ccttcgaaaa caggtggaga 2880 gcgaacttga caaactgcag aaacttgatg tcatagaacc agtttcccac acacctacac 2940 cttgggtctc tccgattact attgttcaaa agcgaaatcg tgaagacata cgcatttgcg 3000 tcgacatgcg caatgtcaat aaggctgtca tccgtgagcg ccacgtaatg ccaacagtgg 3060 atgacctcat ctccgctctg aatggtgcca caaccttcag taagatggat ctcaattcag 3120 gctaccatca gctagaacta gatgaggact ctcgccaata caccgtcttc tcaactcatg 3180 caggccttta tagatataaa cgtcttaatt ttggagtctc ctcagcgtca gagattttcc 3240 agcatgcaat ccaagcaacg cttcacgacc tacctggtgt cctaaatatc agcgatgata 3300 ttcttgtgtt tggcaccaac aaggctgaac acaatgctcg tttggaagca gtcctcaagc 3360 gcctctgtga agtgaactta acactcaatc agagcaagtg tgttttcaac actgaccatg 3420 tggaatactt tggccatgtc ttttcagcca aaggtatcag tcctgatccc aagaaggtcg 3480 aagccatcca gtctatgcct gcacctcaga acgtctctga agtacgcagc ttcttgggta 3540 tggtaaacta ttgtgcccga ttcatcccag gccttgcctc cgtttctgcg cctcttcgcc 3600 acctaacaaa ggccgactct gagtgggaat ggggcacctc acaagcagac gccttcgctc 3660 agatcaaaca gcgtgtttca cagtcctgta ctatggcata cttcaatcca gcaagcaaga 3720 ctgaactcat tgttgatgca agcccccacg gccttggtgc gctcttagtt caacatgacg 3780 atcatgacaa cactgttcct gtcgctcttg ctagcagggc tcttacagag gttgaacaac 3840 gttactccca aactgaacgc gaagcccttg ctatcacatg ggccattatc catttccatg 3900 tgtacctcta tggtggttct ttcgtcgtga ctacagatca caagccactg gtcacgctct 3960 tcaatagccc cactgccaag ccaccacttc gattagagcg atggattttg aagctccagc 4020 catatgattt caacgttcag taccgtccag gcaagcataa ccctgctgac tatatgtcgc 4080 gtcatctgct atctacggag atgtcctctt cggataatga gtgcctagct gaagctcatg 4140 tcagttttgt agcaggtcac gccgttccta agacaacgac cttgtctgac atcacagctg 4200 ctacaaaaca ggatcctgtc ctccaggttg tcattgacgc gttggtaaat gacaactgga 4260 aagatgttct cgcacatgcc accgacacca aatcagaact ccaaagcctg ttcaatgttc 4320 gtgatgagct cactgtgtca aatgagaggg attttcttct ccgtggtaat cgcatcgtca 4380 tccctcaatc ccttcgccag caaataattg acatagctca cgaaggacac caagggatca 4440 cgaaaacaaa gagtcttctt cgtgagaaag tttggtttcc gtccatagac cgaatgaccg 4500 agaagacagt ccgtgattgt ctaacctgcc aaacaaacac aatcgaacac tcgaaagagc 4560 cattgcttat gtcacctttg cccaagaaac cgtggtcaga gataagcgta gattttgccg 4620 atcttcctac aggagagcat ctcctagtgg tcattgatga ctattcgcgg ttcccagaag 4680 tggaaattgt ttcctctact tccgctagac aagtaattcc aaagcttgat agaatctttt 4740 ccagttttgg ggttcccgac gttgttcgct ccgacaatgg tccgccgttt aacggtcgag 4800 agtttgcgga ttttgcgcga tatttgggat tccaacacag acgcgtgaca cctcgttggc 4860 cacaagcaaa cggcgaagtc gaacggttca tgaaaacact gaagaaagcg tatcgttccg 4920 caatcgcaga aaacagatca tggaagcagg agctctataa gttcttacgc aattaccgag 4980 ctacccctca ttccacaact ggtgttccgc cagcgacact actttttgga agagcagttc 5040 gcacacgcct tccagagcat gcttcttcag atcatcagcc tctcgatggt tcccttcgct 5100 ctcgtgatca tgccaagaaa gagcgtatga aaacctatgc tgacagccgc ggcacaactc 5160 gtagcacgga aatcaaagac ggtgacaccg tacttgttcg acgcgatggt ctggttccca 5220 aacatcagtc cccgtatctt cctcagtcat acacagtgat cagaaagaga ggaacccgca 5280 tcactgcccg ttgtggtaac cattacatca cgcgtaattc gtcacgtttc aagcgatatt 5340 gtggacctct tcctcgctct gctcctgatg atgatgaaat cgattttgac atcgcactcg 5400 atgcccgtga tgtaccacaa ccaccacgtt tggctcaacc gcgtcgaaac ccccagcgta 5460 atcgccaccc cccaatccgt ttacgcgatt ttgtttcttg actctctgca cgcaaacata 5520 cccatgtgca cgtacttccc aattgcataa caaaaaaatg cagttaactt gttagttttc 5580 tttattcaca tcatataaac tcaacagaac atgctagttt tatatcgcac ttgaatttct 5640 gttggaaatc attggaactg aaatatccat gtaactccac tgtattactt atgtactctt 5700 gcaaaataac catttatttc tcacccagct ggaaagtaaa caggcattca gttttttttt 5760 tttccaatgt catgtgcatt gttatggaat actgctccat gctgactaga aagtaaagta 5820 cattattttc tgtgccatgt gtacatgtaa ttgtcagttt atatgtgccc taacaggttt 5880 agaccattta ttttcgtata catgaatcat tttcttttca taacaggaca tgtaatgtgt 5940 ttccttttta catgcatctt tatttaccac tcttttatct gctttgtcct gtatctctcc 6000 ggcagttata taatgttcta tttatatttg tgtgagctgc catacatata ctgtcatcaa 6060 gcctgtatca cgctagacat ttaatcattc tcttgtctga atgtcgtaca tagcaggaag 6120 tttgagatat acaatttttt ttttaaagga aaaggaatga aagtagtatc tacaatactg 6180 aataacccaa gttcattctg aatagttttc actcaataat tttgtttaaa gacatatatt 6240 gccttttatg tagatttatt tatttattta tttatttatt tcacatcttt aaaaagggta 6300 gcccgatcag catgagctgg ttttcatcag ggccctttac aacatacatg gttcaataat 6360 aatgtcaatc aaaacaacaa taaatgcaca ttataatatg agagataatt cggacatgca 6420 ataaaaaggc gatacagtac atttcatagt atacgaagtt caaattaaga taaggtatgc 6480 tatagatatt tataaaattg ttgcgaatat ttcaatgtta aaaaagttta ccgtcaccat 6540 tgagtaatta taaaatgtat acaattaaat actttcccag tttataatta aaactattgt 6600 aaacaaacaa caacaaaaac ccacaattaa aatatatata tatatataca tgtagttgac 6660 atttgtacgc aataacacat agtattaggt taaagttaaa acaaagtatg gtataaatat 6720 caaaacaaat tattgcaata tatttcaatg ttaaaaaagt ttgccgtcac cattacgtta 6780 taccatatat actattaata ctttcccatt taatacttta aactattaat tataaaaaca 6840 aatagttgac atattatgca cataaatata ataacatgca tatgttagta tcataatcaa 6900 ttcataacat ggtattgctt aagtacatga aatacaattt caaagattcc ttgattgagg 6960 tttaaaaaaa aaaaaaaaaa aacatcaatg ataatgttgt ttagcatatt gataaaataa 7020 gtaagcaaga ttcattattg gcgtgtgcta attaaaataa aatgttaaag gagattgcag 7080 cattcatatt gcacggcaat gaacaagagc gttccagact cagtgtgata aattgctttt 7140 gaatacgttc agattggggg agaacctggt ttctatgggt agattattcc agagtgttat 7200 tgcagagttt acaaaggagc gcttaaagaa ttctgtattg cacctattgg attccagctt 7260 aagttgatgg gaattacgtg tcatgcgttg tgctacatca tcatgtaaaa taaatttgtt 7320 tgccaataag gcaggtgcaa gatggtgaac acatttaaat gccataatcc ccattgctct 7380 tgaatacaat gcctcaagtg ttgaccaatt aagttgtaat aaaacctcgt gtgaaggagt 7440 tgaccacgaa catccagata taatatatgc tgctcgttta tgtaatttat ttatagtttc 7500 ataattatgc agggatctat ttgtccacac agtgcagcag tacatagcat gaggtagaat 7560 atagccccag tatatcatac tcagataatg tttattgaac gtgcccttga gtcttcttag 7620 aatacctaat ttctgtttca tttgtaaagc tactttttcg acatgcttcg aaaataagag 7680 attgctgtct actataactc cgaggcattt gtactgtgtc acacattcaa tcggtgttgt 7740 ctttatatgc acatttaaat tattttcgtt tagcgtctgt aacttttgct tcgacccaat 7800 aaccattacc tttgttttag tagtattcaa tagaagttta tttttttgcg tccacgaata 7860 cacttcatct aaagcaagat ttagtttcgt ttggatctca gataatgttt tgccttgtac 7920 cgacatggtc gcgtcatctg caaataaaaa catgtccgca ctatgaatac tagtgggcaa 7980 gtcattaata aatatcgaga ataacaatgg cgctaagaca gaaccttggg gtacaccgta 8040 attaattgtt ctcgttgatg actttttacc tttaatagac acaaactggc tcctgcctcc 8100 tagataggac cgaaaccatt ttatggctct atccgtgcaa ccaacgtttt ttaacttcat 8160 taatagagtt gagtgattca ctgcatcgaa tgccttcctc atatcaatat acgcaacacc 8220 gtttaagttg cctttgtcca cgttttgggc ccataaatct accatacaaa gcagggcagt 8280 ttcgcatgaa tggttggggc ggaagccaaa ctgcctttct gttaatatct tatttacttt 8340 taaatattct tggaattccg tgttcacagc tttttccagt attttggatg gtatggacaa 8400 taacgaaact ggtctataat tttcaacgct gagtttactt ccagctttat aaataggttg 8460 gactcgtgcg atcttccatt catcaaaaaa aattccctga tccaaagatg aattaagtat 8520 ataagtaagg ctttgtatta cattttgaga attgcatgca aattttagta attttattga 8580 aacatcgtct gggccggtgg cttttttaat tgggatacgt tcgatttcct tcataacaaa 8640 ttcatctgtt ataactggga gatcaaacga attgactgga ggaacggtat caacagtatc 8700 gctgtgtaca gatggttcac tagctctatc aatggtggag ttgttaacat cattttcaaa 8760 gttaagagga ttaaacatag tatcgactgc gtccacaaag taattgttaa agtgattggc 8820 tatcttctcg gcatcaatta cttcttcacc atctacttcc agtttaaggt tactctcttt 8880 tttagatgat gatatgagtt tcaaagtttt ccacatggcg ttaggagttc cgccgttctc 8940 atggagtaga gcatttatat aatcattttt ggcatttctg atcatacacg taatttcgtt 9000 tcttaatgac ttgtattctg accaaaattc agagctatcg ggattgctag gcttagttgc 9060 cattgtgtaa agccaatcac gcctattcat ggcctctatt aaatcgccag taatccacgg 9120 gcacaacttg gatctaatac gtttactctt tactggtgcg tgcttgttga cggcacttat 9180 gagcaagtca acccaacatt gccaagcatg atttggatcc ttatcattta aaatctcgtt 9240 gaaaggcaag ttctgtaaca tggtgacaaa attatcatta gaaaaatgtc taaagcatcg 9300 atactcaata atattatcat cattcttttg cttggccctt gcatatccaa aaacagtgaa 9360 tattagataa tgatcactta tatgagtctt caccactccc gtgtgttggt gttcctctgg 9420 gatggatgaa aatacgtgat cgatcaatga ctttgtgtgg ggcgtaacac gggtgggtac 9480 actaatgagt tgatgtaata gattagtatc cattaatgac aaaagggctc gggaaaatgg 9540 agtgcagatt tctggtaata aatcacaatt aaaatcacca ataattatga tttctcctgc 9600 attctcactg atcgagtgaa ttatttcaga tagcttatca aaaaactcat ttggtgaatt 9660 cggaggtcta tagacaactc ccagatacaa aggatgtgtt tgtttttgtt taactttgac 9720 aaaaattact tctagttcat tatcaagttg actaataact tcgaaactta tattattttt 9780 tacatagagc gctatgcctc ctccgtgtct tgatcgatct tttcgagtta cacaaaaatt 9840 atctaatgat atatctaaat ccgtaattgt ggaatcacaa tgtgtttctg aaattgcaac 9900 aatgtcaaat ggatcgttac ctagaagaat tttcagttca tccattttgt gtgggagaga 9960 gtttatattt atatgacata tctttaaacc ggttgaacag agttccggaa tcatgccatc 10020 aacaagttca taatatcctt gtgtatttgt cacattgtgt ccttcattta gttcactttc 10080 atccttggaa gctgtagttt tttcaatttg cgtttgtttc tcattgatgt ttattacatt 10140 tgtagcgttt acattaagat cctccgcgtg aagacttaaa ttatcgctat catctattgc 10200 tactattgat actcttttac agctacaaga ggttataaga gagaaacaaa atgatcaaac 10260 ttttttataa ttttaataac agtctatcat ttgttgtagt aaatgtgatt caaaaacaac 10320 aaaatgttga tgcgaaagga aagttgtttt ttgttgttgg atgtagtaaa actcaaattt 10380 gaggtataaa tagccttcag taaagccagg gctatgtttt atcactattc tttgttttga 10440 agagtattta atggtttaat gatttctcac tccttgtgaa ttgagaaaag aaggtaaaat 10500 gttgtttggt ataaactcgt tcacccaaac ttattaattg ctttgtttaa tggggttaaa 10560 aatataactc taatgtattt gttggcattt gttcagttga aaagttgtgt tagatttcaa 10620 agttcagttt ttgtctgaaa gaagtaaaga aagtactggt ttccaaaata taagactaaa 10680 aagtggaaat acacaagttt tatggatata tgtatgatat gaaaggttca ttctatatct 10740 tggaaagtat attactcgtg ctcatattgc ttttgatgct taacaagatt tctgtggtag 10800 attccatcca aggaagggag gaa 10823 // ID hAT-1_SP repbase; DNA; SPU; 6306 BP. XX AC Contig26222; XX DT 22-OCT-2004 (Rel. 9.09, Created) DT 22-OCT-2004 (Rel. 9.09, Last updated, Version 1) XX DE hAT-1_SP, a family of autonomous hAT DNA transposon in the sea DE urchin genome. XX KW Autonomous DNA transposon; HAT superfamily; hAT-1_SP; hAT-N1_SP; KW transposase. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-6306 RA Kapitonov V.V. and Jurka J.; RT "hAT-1_SP, a family of autonomous hAT DNA transposon in the sea RT urchin genome."; RL Repbase Reports 4(9), 246-246 (2004). XX DR BBBCM; Contig26222; Positions 227 6532. XX CC hAT-1_SP is a fossilized copy of an autonomous hAT DNA CC transposon. It is flanked by 10-bp terminal inverted repeats CC and share common 100-bp and 70-bp 5' and 3' termini, CC respectively, with nonautonomous hAT-N1_SP. The 595 hAT-1_SP CC transposase is encoded by 3 exons (CDS pos. 2100-3185, CC 3545-3702, 3967-4507). XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="hAT-1_SPp" FT /translation="MPSKVWRVFTKVSSTTVKCTICDRVLGYKGGSTGAML FT NHMKTHPNSIEDDRQPRLSSFNRQCNPDRAQRISNLIADMIAKDGLPINFV FT EGEGFRALMHDVEPDFTIPSRQTVMRILELKFLEQKTKIKHWMSGCEHIAI FT TTDCWTSLGQEGFMTVTAHGIDKEWIKRSFVLNTSPVASLDDNDEDNDPPL FT PQRHTSQALKSQLREVAQTWEINNKVCGVVHDNAANVRVIGEAVGAPDVPC FT TAHTLQLCVNAGLNSNGQLQRVIGAVSRLVGHFKHSVVASQALTAKQDQHN FT LPKHRLIQSVKTRWNSVYDMFARVTEQRWAITSVLSDERLTLHRDATTLQL FT KDEHWSIVDNMGKTLEPFLVATKVLSSEEHPTASTVLPMITGLLDNFLIVE FT ETDSGIVRQFKETTSEQLKRRFHIKSARERDEDVEIEDVSALHLASALDPR FT YSNLTYLPRAMRNVVKNKLNELIPERDDEEQNADVEQPSTSLDFLITGRRF FT TAPQQQRDSVEEIHTFFDLPVVPSTADAVAWWKANEASFPLLGNVAKRFLT FT IPATSVPSERVFSTAGNIVTKKRSCLLAENVNMLIFLKHNAKSIPLI" XX SQ Sequence 6306 BP; 1980 A; 1156 C; 1244 G; 1926 T; 0 other; tagtgctgta accaaacgtt taaccgtccg gtatccgacc gcccatggcg gattccggtt 60 tgaatttgac ggtttcgttt acccgatttt tttttttttt tttttttttt tttttttttt 120 tttttttaaa tttgtgtttt tattggaaaa tcaaaagaaa tcacaatatt tacaaataat 180 ttacacattt agaaacaaaa tcacaaaaca aaaacggaga cttaactgtc gggcatgcat 240 tggaacattg actaggtttc actttgttta tgaatctaat aaatcaagtt ttgccgacat 300 tatagtcatc ataagtcagc cccgacttgt gatgttgaat tgtaaagcaa cacaatcaac 360 tgagaagttg acccgtaaaa ctattaagtg cccagcctaa aaataaaaca gttcaatcaa 420 aagcctctaa attgtaaaaa taactctggc ttcacgtgac cgcgcaacgc atcgaaagtc 480 ccaaccatta aacgaggtca atgagacaat gaccccagct catgccccag tttttcttgc 540 gcaatattac aacaaatttg gcgaggccgg gtgaaataca tagtctgtac tttcagtcac 600 tgataatgcg taaccgtccc aaactccata gactccaaat cacattttaa tttttaaagt 660 tacttacaaa ttatgtacaa ctttgcaaga taactacgaa aagcgtgatt atggtattta 720 ttgaagaatc atattcaaga atgaatcaat aaacccaggc aaaatgttga gtttcaataa 780 agttttgaag tttatgtttg tgtttgtcta tgatttatac ttaacttgag ttacgttcat 840 attttgtaaa cagctacgtt actggtgtgt taatctgtca tgtggaatta tctagtgact 900 agaaataacc cggatcagta attttattga aattgggatc taggggaagc ctttcttatt 960 ttcatcattg atcaatttct aagtcctaat tactaaataa agggtgcatg gacggataat 1020 acaccgccga actgttttta attcattaac ttgtcgacag acaagtcgca gacgacagta 1080 tctcttcata gtttatttga gtgccgttgt tcttgtgttt tcactggcgg ccttttttta 1140 gaagttcgtc ggaaaataaa cttagagaag aatacgtttc cgattagaat ctataaatca 1200 gccgagtgtc gatttttgtt taaaaaactg ccgatgatta ttttggcggt tgtttttttc 1260 ggacgtcatt tcgtaatttt cgttcaagag tatatatcaa ttttaatgta ttaaacaaaa 1320 tgattaatga tgtaactgtt aactgaagtt aggagtttga gataacccag ggtatttcgc 1380 cagctgattt tggaaggggg taatcctttt ttgtttaata atattgtaag tcaagtttac 1440 tcctgaaaca attctttcat ttaattccga ttgtcaataa agaatctaac attcagccga 1500 gtgtcgattt ttgtttaaaa aaactgccga ttgttttggc ggttgtttgt tttggacgtc 1560 atttcgtcca agcgtacata ttaatttatt aaacataatg attaatgatg tagcttttaa 1620 ctgaaattag gagtttgaga taacccagga aatttcgcca gctgattttg gaagagggta 1680 atcctttttt gtttaataat attgttagtc aagtttactc ctgaaacaat tctttcattt 1740 aattccgatt gtcaataaag aatctaacat tcagccgagt gtcgagtttt gttttaaaaa 1800 atgccgatga ttgttttggc attttttttt tggacgtcat atcgtccaag cgtatatatt 1860 aatttattaa acatattgat taatgatgta gcttttaact ggaattagga gtttgagata 1920 acccagaaaa tttcgccggc tgattttcga agggggtaat ccttttttgt aaaataaata 1980 ttgtttataa gtcaagttta ctcctgaaac tacctatcac tatcatcctt tcgtttgcgt 2040 tcgtccacga cggttataat tatatctttc tcgccttcga attcgaatat tacgtcaaga 2100 tgccaagcaa agtttggcgc gtgtttacga aagtttcgtc gactaccgtg aaatgcacta 2160 tttgcgatcg tgtgctgggc tataagggag ggtcgaccgg agctatgtta aatcacatga 2220 agactcatcc caactccatt gaagatgaca gacagccgag actttcatca ttcaaccgac 2280 aatgtaaccc ggatagagca cagcgaattt ctaatctcat cgccgatatg atcgcaaagg 2340 atggactgcc catcaacttt gttgagggcg aggggtttcg agcactcatg cacgacgtcg 2400 aaccagactt cacaatccct agccgacaaa ctgtgatgag aattcttgaa ctaaagtttc 2460 tagagcagaa gactaaaatt aagcactgga tgagcggatg tgaacacatc gcaataacga 2520 ccgactgctg gacaagcttg ggccaggaag gatttatgac cgtgaccgca cacggcatcg 2580 ataaggaatg gatcaagaga agtttcgttc tcaacaccag ccctgtggcg agcctcgacg 2640 acaacgatga ggacaacgat cccccactcc cacagcggca tacttcccaa gcgctaaagt 2700 cgcaactcag agaagttgct caaacctggg agataaacaa taaagtgtgt ggggttgtgc 2760 acgacaacgc agccaacgtc agggtgattg gcgaggccgt gggagcaccg gacgttcctt 2820 gcacagctca taccctccaa ctctgtgtga atgctggctt gaactcgaac ggccagttac 2880 aaagagtcat tggagccgtg agtcgcttgg tagggcactt caaacactct gtggtggcat 2940 cacaagctct aactgccaag caagaccagc ataacttgcc aaaacatcgc ctaatccaat 3000 ctgtcaaaac gagatggaat tcggtgtacg atatgtttgc tcgagttacg gaacagcgct 3060 gggccatcac aagcgttctg agcgatgaac gtttgacgct tcatcgtgat gcgacaaccc 3120 tgcaactcaa ggacgagcac tggtctatcg tcgacaacat ggggaaaaca ctggaacctt 3180 ttttggtaag tacaattgaa attattttca ttaaatatat tttaattatc ttacaatttt 3240 ctattcaatt tcacaaataa gaaataatta gaatgcatca atcatatgca atgaaatttc 3300 aattaaccat tctactgtaa ataaccattt ttcattaacg attttatcgt attttttaat 3360 atgttaatta atataatata cataaatata tttgctcgta agtatgaatt tatgaacaat 3420 ttgcaaagat gcaaacttga aaaaagaaaa actgacatta ttgcattgga tttgtaagtt 3480 gtaagtttgt aactagtggc taggtctagc tgtaaccatt gcattgtctt ttttcactta 3540 ataggtagca acaaaggtac tttccagcga agaacatcca acggcatcaa cagtccttcc 3600 aatgatcacg ggactacttg acaacttcct catcgtggag gaaaccgata gcggaatagt 3660 ccgacagttc aaggaaacaa catcagagca attgaagaga aggtaccgat tatattaaac 3720 aaaacgcaaa tgcttcattt aattaaagaa agagaaaaaa gagacactat ctcattggaa 3780 aaattaacaa cttattcgat ttttaatatc aattgtaaaa aaaaaaaaaa aaaaaacttg 3840 tataaaatgt tgctatcgca aataaaatga cagcactaga cttttaaaaa aagcaacaac 3900 aacatatata atgctgatgc tcaaatatta catttctaat tcataaattt ttcgtttcat 3960 ccttaggttc catatcaaat ccgctcgaga gcgagacgag gatgtcgaga tagaagatgt 4020 atcggctttg catcttgctt cagcattgga tccccgctac tcaaacctca cttatctacc 4080 acgcgccatg agaaacgtcg taaagaacaa gctgaatgag cttatcccag aaagagatga 4140 cgaagaacag aacgctgatg tcgagcaacc atcaacgtcg cttgatttcc ttattacggg 4200 aaggaggttt acagctccgc aacaacagcg tgacagtgtg gaagaaattc atacattttt 4260 tgatctgccc gtggtcccct ctactgctga cgcagttgcg tggtggaaag cgaacgaagc 4320 gtcatttcct ctcctcggca atgtcgcaaa gaggtttcta acaataccgg caacatctgt 4380 cccatccgag agggtgttct ccactgcggg caatatagtc accaagaaac ggagctgcct 4440 tttggccgag aatgtgaata tgctgatatt tctcaaacat aacgcaaagt ctatccctct 4500 gatctgagaa aggacttaaa ttgatgatgt tatttcataa actacatgct ctttattact 4560 cttgtagtat acttctcaac gataaagatg acatcacttt gttattgtta atttgttaca 4620 gacttattcc tcacttaccc ttttatcccc gttcgtacga tatgattcta gtttctgtta 4680 taaataatta aaatatgtta ttttatgact tatctttcaa agtctgaata tacgctattc 4740 atctaaaatg tttgaaattt gttgagtttt ttcatggtga tgtcattttt aggcaatgag 4800 atatcaccga atgaacaagt taaatttttg aagtacaaac taaaatcgat tattatcaaa 4860 ataaactatt agaatcaagg tcacaagttt tcacaacgct agtttattaa gccgacacaa 4920 acttaactgc tgagcgcaga tctctaaatg ttctttcgta ataattatta tgctcggtat 4980 ttgttatatt tcattttctt gccacatttg caaaaagggg gtagacaact aggcatgtta 5040 taatttataa tccttgccta acacgtagta ttgggataat tgtatcaaaa cataatgcgc 5100 ctgtaaatag cctgtactgt tgtgtgtcga actgtcgatt tgttttattt ctttgtcaaa 5160 gataaatagc ccaaactctg aagtttggca ttttaatctt tgaaatgtgc gtgcttgact 5220 agtcttgtct ccctgtcagt atatttcttg ttaccgtaat tcaatgaata ggagacgatt 5280 gccatattta aaattgttaa ctttagagag ttagacacaa ggcttatgaa aatgatgatc 5340 catgtactga cctccgaagt ccgaatttca aagtcaaaaa aagttatagc atcagcgagg 5400 ggtcggggta tggtaaatgt gttttcttcg aatcacatgt caacatctcg ctgttttata 5460 tttggaagga aaacatagga acttaggaag cacgtgaatg cccaactcat ttacatatgc 5520 cttgtgtcag ctgctgaagt tgaattaaca agcagtgata tgattggcta gtcgatgtat 5580 ggataatgtc cgcgcacaca atgcatggag ttttgcgagg gagatcgaga gagagagaga 5640 gagatagtgc agtgatgatt agagcatgat tggtcatgaa taatgataag ttggtgctga 5700 ttgtgagcga tgattggtcg cttacatgag acacgatgca gacagcgcgg gcatggtgcg 5760 agagagagag agagagatgt gtgcatgagg gtaccgggtc ggtgacgggt cataaaaata 5820 aacatgattc agtaatattc tttgaaaccg cgcgcggtgt ctagatattt acaaactgaa 5880 caagaaataa caaccaagtg ataagcagta gtattcagct tagatttcag ctggatattt 5940 aaaaaatgaa caagaaatga caaccaagtg ataagcagta gtatctggct tagatttcag 6000 ctggatattt acaaactgaa caagaaatga caaccaagtg ataagtagta gaattcagct 6060 gtcaggggcg gtttaatatt tacaaacaga gcagcaataa catcgcaccg caccgatgag 6120 tgattgagtg caatgaatga cctagaaact tgatacctgg cgtgtgctgg gtgcgtgata 6180 tactactatt cttttttaat cagcggcgac cctggcaaaa gtgaataatt ttcgtttaac 6240 cgaaaaccgt ccggttttga ctggcggtta aacggaattg gagatatccg tgatgttaca 6300 gcacta 6306 // ID CSP2090 repbase; DNA; SPU; 167 BP. XX AC J01187; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence csp2090. XX KW Repetitive sequence; CSP2090. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-167 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01187; Positions 1 167. XX SQ Sequence 167 BP; 44 A; 36 C; 36 G; 51 T; 0 other; aattcgggat caaaaccgtg tcgatgtgct atattagtgc ccttttaggg gttcctgact 60 gacctaaagg tttataatta tcattgaagc atgagctaaa tccaggattt tgtttcagaa 120 tctgaggcct gtcttcatca gctcgagatt gccaaataac ccgcccg 167 // ID SPEC1 repbase; DNA; SPU; 472 BP. XX AC J01207; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus spec1 repetitive sequence. XX KW Repetitive sequence; SPEC1. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-472 RA Carpenter D.C., Bruskin M.A., Spain M.L., Eldon D.E. RA and Klein H.W.; RT "the 3' untranslated regions of two related mrnas contain an RT element highly repeated in the sea urchin genome."; RL Nucleic Acids Res 10, 7829-7842 (1982). XX DR GenBank; J01207; Positions 1 472. XX SQ Sequence 472 BP; 168 A; 78 C; 79 G; 147 T; 0 other; tataaagcac atgtatagat gcaattgtta aaacaatgat tacataacac ttgcaagaat 60 acattcaaag ataaaattac taagatatta tgacaaaaac cctctcaatc tggacctcta 120 ggaagatcag agccattcaa taatttaacg gtccttaata gagctattca tccgtattta 180 ttttaaataa ttatatttgt ttatgttcat gggcatgtaa tatgtttgtt taaacggaaa 240 atgaaaccaa accaatctag agcccggcac taacgtcctt tggcaaggca ttaattcaca 300 tttaccactc tccacccagg tgtataaatg ggtacctagc aattgatggg gtaatgataa 360 atgcagggcc cgcaggacag cagtattgat actgatgttc gctagcctga gtttaaaaaa 420 atattattat cattattaat agtagtagta gtagaagtac tagtatttta tt 472 // ID CSP2034 repbase; DNA; SPU; 498 BP. XX AC J01186; XX DT 28-SEP-1995 (Rel. 1, Created) DT 25-MAR-1997 (Rel. 3, Last updated, Version 2) XX DE S.purpuratus repetitive sequence csp2034. XX KW Repetitive sequence; CSP2034. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-498 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01186; Positions 1 498. XX SQ Sequence 498 BP; 116 A; 101 C; 75 G; 206 T; 0 other; aattccattt cccgtttacg tgtaatcgcc atgggaaatg tgttggtata tcggtaacgc 60 acttgacttc caagctcgag atacctggtt tgagtccggg tgtctccaac aatttttgtc 120 ttcatttctt ttttcttttt gacctttcac tgtaccatct cctttgatta ttaaaacatt 180 attcgcaaat aatgtaataa acaaccgtat ttaccttatt attacccttt tttccactta 240 atccattatt tagtgcgtgt agtccctatg ggggatgact tttttttcaa atctagattc 300 tacattcctg tcttttgcga gcaatatcgc cgttatttct gcttggattt agttgatttt 360 tgagtatgtt gtagctgaga ctatatgcta tctaaatcat tcctcatttt ttcaattaga 420 tatcaggatc acgcttatga tcatgatcat tatcatctca tttctcactg agtattattt 480 atatgtctgt ctctcccg 498 // ID SURF1 repbase; DNA; SPU; 333 BP. XX AC X07085; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus retroposon-like DNA sequence SURF 1-1. XX KW Repetitive element; Interspersed repeat; retroposon; SURF1. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-333 RA Nisson P., Hickey J.R., Boshar F.M. and Crain R.W.; RT "Identification of a repeated sequence in the genome of the sea RT urchin which is transcribed by RNA polymerase III and contains RT the features of a retroposon."; RL Nucleic Acids Res 16, 1431-1452 (1988). XX DR GenBank; X07085; Positions 535 867. XX SQ Sequence 333 BP; 86 A; 64 C; 70 G; 113 T; 0 other; cagatataag tattatatct cgcaattcgc atttcattcg catatatgga tatgggtttc 60 gtatagtctc cgggctgtgg ttcgcggttc gagtccctcc gcgacactaa tgtcctttgg 120 cacgacaaca aattaaatgt gttactctcc acccaggtgt attaaattac ctggtaggaa 180 ttgtattcct tgaatacctt tacatcttag ggtagctggg ctaaagcagg gtaataatac 240 tactttgtat aggcgccctt gggcatattc tgggatggat acgtgcgcaa tataaatgta 300 gctagtattg ttattattat tatcattatt acc 333 // ID R2-1_SP repbase; DNA; SPU; 3305 BP. XX AC 048B05; XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 04-MAR-2009 (Rel. 14.02, Last updated, Version 2) XX DE R2-type non-ltr retrotransposon from sea urchin. XX KW R2; Non-LTR Retrotransposon; Transposable Element; R2-1_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3305 RA Jurka J.; RT "R4 non-ltr retrotransposons from sea urchin."; RL Repbase Reports 9(2), 499-499 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 83..3016 FT /product="R2-1_SP_1p" FT /translation="MPPYVLIGSLLLFFTFQANCLRFNVPNLRATEWQPHN FT AAIKDRLTLLHHDLGAGIVTPKSAADDLTSILTEYFSGQDDFVDKKLSDTY FT IEHEPKSLIQARKCKNVLRKRAFGKNGTAEDRKAFRAAVKTVSYLRKQDKQ FT NKCDKSRSHMEKRYRNNFYEFSKAACSGSLNESPTKPLFSEDVANNYFGDK FT YSTPNVINIGSLNWFPYVNINTPDRFEFDMTPIKPKDVKNVLRRKKAMSAP FT GNDGLMYGMIKHLDSVHHFLATLYNKILDSGDPPESWSESKVTLIYKSGDT FT DKPENFRMISLTSCISKVFHQIIAERSMSYLTENNFIDKTVQKAFIDGVNG FT CIEHNIVLHEILSDAKCKKRSLHTTFFDLADAFGSVSHQLITSSMERYAIP FT TPIARYVATLYSRLNGRVRGPGWITKPFEFKRGVFQGDPLSPTIFLMCFNP FT VLEYLKEQQDQFGYKWGDRKIITTPYADDFNLITGNKLQHQKLMNGINDRL FT KSMGLTLKPRKCSSLSLTSGKPNIVDFTIGSDVISSVHGHPIKFLGSLITF FT SMKTSEIFEYLKGKIESTLENINKCNIRNEYKLCILTRYALPSLRYMLTVH FT DVHATHLKSLDIILDRYIKMWLGIPSRGANLAVVHDPDGFNIPSISDLYRT FT CHCLAYSRSRVKGDDVVNHALDRRLERERGWSRQTSFSLEAHEIHSKIPDS FT VSWNQTKTVIKKAVQDVCRENWKRVIEPLLVQGEFMKVVHMESTDVTWKSI FT IYNLPQSVMKFSVNAAIDSLPTNKNLYRWGKRISDTCNLCNCTGTLHHVLN FT NCERMLDRYTWRHNNILRIMLKHIKNTSNNSTKVYADIEGESINGGTIPPN FT IIRTQHKPDICHIDNKNKDIIIIELTVPFETNIDKAHQRKQDKYASLTHEI FT TSTGWKSKLICIEIGSRGLITPQNKYRLKEILKITDSTRYPESRDEILKAV FT LFSSYVIFQGRREPAWQFDQYL*" XX SQ Sequence 3305 BP; 1092 A; 717 C; 597 G; 899 T; 0 other; atatatcttc actctcgata tatcggaact ttcgattttt cctaccctac aactaccggc 60 gacgaatcac ctaacaaccg caatgcctcc atacgtgctc attgggtcgt tactattgtt 120 cttcacattc caggctaatt gtctgagatt caacgtccca aatctgaggg ccaccgaatg 180 gcaaccccac aatgccgcga taaaagaccg tttaacattg ctacaccacg atcttggtgc 240 cggtattgtt accccgaagt ccgcagctga cgacctaacg agcattctga cagaatactt 300 tagtggtcaa gatgactttg tggacaagaa attaagcgac acgtacattg aacatgaacc 360 aaaatcacta atccaagccc gaaagtgtaa gaacgttctt cggaaaaggg cctttggtaa 420 aaatggaaca gccgaggaca gaaaggcttt cagagcggca gtcaaaactg tgtcgtactt 480 gaggaaacaa gataaacaaa acaaatgtga taaatctaga tcacacatgg aaaaaagata 540 ccggaataac ttttatgaat tctcgaaagc tgcatgtagc ggttcgctca acgagtcacc 600 aacaaaacca ttattttctg aagacgttgc taataattat tttggagata aatacagcac 660 accaaatgtg attaatatcg gttctctgaa ctggtttcct tatgtgaata ttaatacccc 720 tgaccgcttc gagtttgaca tgactccaat taaaccgaaa gatgttaaaa atgtgttaag 780 acggaaaaaa gctatgtcag cacctggaaa tgatggcctt atgtacggaa tgataaaaca 840 tttggactct gtgcaccact tccttgcaac cctgtataac aagattcttg actctggtga 900 cccgcccgaa agttggtcag aatctaaagt aacgctcata tataagtcag gggataccga 960 taagccagaa aactttcgta tgatttcgtt aacatcttgt atcagcaaag ttttccacca 1020 gattattgct gaaagatcaa tgtcctatct taccgaaaat aacttcatcg ataaaacagt 1080 tcaaaaggct tttattgacg gagtgaacgg atgcatcgaa cataatattg ttctacatga 1140 aattttgagt gacgcaaagt gcaagaaaag atcgcttcac actacattct tcgatttggc 1200 ggatgcattt ggcagtgtaa gccaccagct gatcacatca tcaatggagc gttacgcaat 1260 accgacgcca attgcgagat acgtagcaac gctgtattca cgattgaatg gcagagtaag 1320 aggccccgga tggataacaa aacccttcga attcaagcgc ggagtatttc aaggggaccc 1380 cctgtctcct acaattttcc taatgtgttt taatcccgtt ctagaatatc tgaaggaaca 1440 gcaggatcag ttcggataca aatggggaga caggaaaata ataacgacac cctacgcgga 1500 cgactttaat ctgataacgg ggaacaaact acaacaccaa aaactcatga atggcatcaa 1560 cgaccgattg aaaagtatgg gcttgacatt gaaaccgaga aagtgttcat ctttgtcttt 1620 aacgagtggt aaaccaaata ttgtagactt tactatcgga agcgatgtaa tatcctcagt 1680 ccacggacat ccaattaaat ttttaggatc actcatcaca ttctcgatga aaacttctga 1740 aatcttcgaa tacctgaaag gaaaaataga atccactctc gaaaatatta ataagtgtaa 1800 cattcgaaac gaatataaat tatgtatact cactagatat gcactcccgt ctctccgtta 1860 catgcttacc gttcatgatg tccatgcaac gcatctgaaa tctcttgata taatattaga 1920 tagatatatt aagatgtggt taggaatacc gtcacgtggt gccaatcttg ctgtggtcca 1980 cgatcctgat ggctttaaca taccgtccat ttcggacctt taccgtacct gtcattgtct 2040 ggcttacagt agatctaggg tcaaaggcga cgatgttgta aatcacgccc ttgaccgaag 2100 actagagagg gaaaggggat ggtcacgaca aacgtcgttc tctttggaag cacatgaaat 2160 tcactcaaaa ataccagact ctgtaagctg gaaccagaca aaaactgtga ttaaaaaagc 2220 agttcaagat gtatgtagag aaaattggaa aagagtgatc gaacctttac ttgttcaggg 2280 agaattcatg aaagttgttc atatggaaag tactgatgta acctggaagt cgattattta 2340 taacttacct cagagtgtaa tgaagttcag tgttaatgca gcaatagata gtcttcctac 2400 taacaaaaac ctgtaccggt ggggaaaaag aatatctgat acatgtaacc tttgtaattg 2460 tactggcact ctgcatcatg ttcttaataa ctgtgaaaga atgctcgacc gatatacctg 2520 gcgccacaat aacatactac gcatcatgct caaacacatt aaaaacactt caaacaattc 2580 caccaaagta tatgcagaca tagaaggaga aagcatcaat gggggcacca taccaccaaa 2640 cataatacgt acccaacaca aaccagacat ctgccacatt gacaacaaaa ataaggacat 2700 tatcatcatc gaactcacag tccccttcga aactaacatt gacaaagcac atcaacggaa 2760 acaagacaaa tacgcaagcc tcacacatga aataacatca acagggtgga agagcaaact 2820 aatctgtatt gaaatcggtt cacgtggact cataacccca caaaataaat accgcctaaa 2880 ggaaatcctc aaaatcactg actcaactag gtacccagaa tccagggacg aaatattgaa 2940 ggccgttctt tttagttctt atgtaatatt ccaaggtaga cgtgagccag catggcaatt 3000 tgatcaatac ctttaattta tatatacatt aatttttcat atttgttttg aacttgtaac 3060 cattctgtac caaaatgaca atatttaacg taatacgcaa tttatctcga ttcaattata 3120 cactattcat ttatgtatca tgtatgggga tcttctagct tcctcaccat aatgttacaa 3180 tcttcttctt ttaccctgtt ctgtactata ccacttctgt tttcctctcc ttttctcctt 3240 ttctcctttt cacatccttt tccctctctc tttatcctag tgctccttgt tatcacatat 3300 attat 3305 // ID L1SU_SP repbase; DNA; SPU; 5342 BP. XX AC 007C10; XX DT 14-JUN-2005 (Rel. 10.06, Created) DT 14-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE L1 element from Sea urchin. XX KW L1; Non-LTR Retrotransposon; Transposable Element; KW Interspersed repeat; L1SU_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-5342 RA Jurka J.; RT "LINE1 element from S. purpuratus (possibly 5'-truncated)."; RL Repbase Reports 5(6), 149-149 (2005). XX DR BCM-HGSC; 007C10; Positions 55998 61339. XX CC The 5' end may be incomplete. The sequence was derived CC from BCM-HGSC fragment 007C10, id = 107 (Baylor College, Houston, CC TX). XX FH Key Location/Qualifiers FT CDS 1291..4968 FT /product="L1SU_SP_1p" FT /translation="NNMAVKLSFMTLNVRGIRDRLKRMNIFEWCKTKKNSI FT IFLQETYSTVEIEERWKQDWGGPMFFSHGSNHSRGVLILFSNHLDFEEKKI FT KVDEEGRYIIFKGEIQRVKMLLVNVYFPTRDKETLQIEFLKKLDESIFDQC FT DRDYLVLLGGDFNSILDGKLDYVGSKTPVKSRVIDLIKEFLNKYDLEDIWR FT KKNPNVKQFTFRQNWPVVQSRLDYWFIPCSVEKLVGTCEILTSITPDHSGV FT RLEFNDLVDKFVFGKSYWKFNSSLCMDKDFVEEMNKEIQELKVEWSLQILN FT KLVFWDFLKMKMREFIITYSRKKAKARRVEIELLEKQIKDLEGELVVGPTK FT YIVDCIEEKRDKLNKLYDFSRQGIKIRSRAPWFEDGENNTQYFEQFLKSNK FT RKSVIREVYKENGETTRDKEEILKEIKLFYKDLYSLRADINQNDPFFFNDI FT SKLNEDNKEICEGKLTKDECLKVLKEMKLNKTPGNDGLTVEFYYTFWPALG FT DLLVEVLNETYERGELTASQKQGVITLIEKEAKDTLHIKNYRPITLLNVDY FT KIVSKVLAKRMKEVLNEIIHHDQVGYIKDRNIGEAVRLIDDMLFYSMHYGE FT QGKGFLCAVDFEKAFDSVSHRYLFQILKLFGFGDSFCSWVKLLYKGISSCV FT MNGGHSTGYFEIERGVRQGDPLSPYLFLVAIEILAHAVRRDNGIKGITFGK FT SEIRQVLYADDMTIFLKDIDSVRRLQYIFESFEKISGLKVNKTKTHFMWMG FT EDENKPDGPLFGNLVKEIHILGVSYSLDRSLKDDLNYKEILSKIKKLLVWW FT KQRDLTIMGKIHLLKTYALSKLNYISSLVIVPHWVYKEVAKISFEFIWRGK FT DRIKRAIMYQDYDFGGLRMINFEMSVKIQRIMWIKRLLYGEKSLGWKLFFD FT HCLQFVGGRFIFLCDYDLNKIKLVLDIPPYYMEMLQAWQETSNLRYLEGYI FT NPIIFNNQNICINGKSIFDRYLFERGIVQLNHLVEKGHVKPVKYFMNLGMK FT GNNLLMIIDIYDAIPRLWKDDSGLIEFLEVDLISFNTYFHISSKKIQFVDV FT GSRTIYDYFIKALQRTYDLQVRDGQNDYDFIDKELKEIFVRPRITILIRKQ FT REFQFKLLHGAIYTNEHLHRFGFVGDNLCSFCKQEIETYKHLFLSCGSVQR FT LWQALIQLFELDEIKDLEWRDIFVGLVGSSYRIKMCNTIIFMVKYVTFMSR FT SGGASTNFRKDEKKHF" XX SQ Sequence 5342 BP; 1764 A; 552 C; 1147 G; 1779 T; 100 other; agtgtgtttc cataaacctt gctggtctgt tggggatttg ttctctttca cgatattcaa 60 gtactttgtg gtaacgccta tttatgcaaa acataatatc tgggtaacac ggctcttggt 120 attacaatga gctttattgc aaggtacttt ccataaactc ttttgaacgt ccgctttctt 180 tcacgatgta tattgcaatg cctttataca atgccatagt atctgggtaa cgacggcttt 240 ttttaatatt acaatgagct ttatttcgat aacgcattct atgtaaattc acatatctta 300 gtaaatgact gatacatatt taaaactttt tctgtaaagt gaaaacaatt cgagtatctg 360 gataatggtc cgatctgttc acccagccaa aactattttg ttttaaagcc aggtggtggt 420 gtgatgtttt gagagggagg aacgtgttgg gatccggtat gcatgcttgc ctatcattat 480 gtcgggctga cgtttggtgt tctttcgagt tgtcgggaac gccctttagg agtttttttt 540 tacggagtgc atatacaaaa cgatcaggtg tgtgagccta ttcattcatg ggtgaggctt 600 attatgcaaa ttatagaact tggtaaatga tagcatgatg ggttcggttt gcacgaacag 660 tttattaggt tgccgaactg gtgtcgtttg ggggaatctg gtttattggg atcgtgtttt 720 tatttttaat tagaaggtgc gtattgtaat taggtacgcg ggccggtcaa ttcactgtaa 780 tgcattttag gaaaatcatt taacttagtt atgacgagcg ggttccgtaa tacaattcaa 840 ggcatttggt aagggataaa agctctttgt attttttttg tttttttttt tgtttaatta 900 gattacggtt atataacaat acaacgtatt tctcatcgac ttgtgcaaga agaaatgttc 960 attggtttat tctgtcattg gtctagttaa attgacaggg aaagggggag gctcttgctc 1020 tcggatgttt acgtacaccg aagagcagat ttgggttgtt ttgtgtgggg gtgttgtgtg 1080 tgtagtgaat atgcttgtgt gtatgaatgc gttgggttgt gtggtacggg gtggattctg 1140 cttgcatttt ttatataatt cgacgataag tatgcatata tgtttggctg cagatagttt 1200 tttctataca tttgctcacg gtggaaatag attgtgtgga agtttctttg gagtttatcg 1260 atgtaaggtt ttggatacaa ttacacataa aataacatgg cagtgaaatt atctttcatg 1320 acattaaatg ttagaggaat aagagatagg ttaaaaagaa tgaatatttt tgaatggtgc 1380 aaaactaaaa agaatagtat aattttctta caagaaacat atagtacagt agagatagaa 1440 gagcggtgga aacaagattg gggagggcca atgtttttta gtcatgggtc aaaccatagt 1500 agaggggttc ttattttatt ttctaatcat ttagattttg aagaaaaaaa aattaaagta 1560 gatgaagagg ggagatacat tatttttaaa ggtgaaatac aaagggttaa aatgctattg 1620 gttaatgttt attttccaac gagagataaa gaaactttac aaattgaatt tttgaagaag 1680 ttagatgaaa gtatttttga tcagtgtgat cgggactatt tagttttatt aggaggtgat 1740 ttcaatagta tattggatgg aaaattagat tatgtggggt caaaaacacc ggtgaaatct 1800 cgggttattg atttgattaa ggaattttta aataaatacg atttagaaga tatatggagg 1860 aaaaaaaatc cgaatgtaaa gcaatttact tttcgacaaa attggccggt ggtgcaaagc 1920 cgtttagatt attggtttat accttgtagt gttgaaaaat tggtgggtac gtgtgagatt 1980 ttgacatcta ttacgccaga tcattctggc gttaggctag aatttaatga tcttgttgat 2040 aagtttgttt ttgggaaatc atattggaaa tttaacagta gtttatgtat ggataaagat 2100 tttgttgaag agatgaataa ggaaatacag gaattaaaag ttgaatggtc attacagatt 2160 ttgaataaat tagtattttg ggatttttta aagatgaaaa tgagagaatt tattataaca 2220 tactcgcgga aaaaggcaaa agcaaggagg gttgaaatag aactgttaga gaaacaaatc 2280 aaggatttag aaggcgaact ggtagtggga cccactaaat atattgttga ttgtattgag 2340 gagaaaaggg ataaactaaa taaattgtat gatttttctc gacagggcat taaaataaga 2400 tcaagagcac cttggtttga agatggagaa aacaatacgc aatattttga acagttttta 2460 aaatcgaata aaaggaaaag tgtaattagg gaggtgtaca aagaaaatgg ggaaactact 2520 agagataagg aggaaatttt aaaggaaatt aaactatttt ataaagattt atattcttta 2580 agggctgata taaatcaaaa cgaccctttc tttttcaatg atatttcaaa gttaaatgaa 2640 gacaataagg aaatctgtga aggtaaatta actaaagatg aatgcttgaa agttttaaaa 2700 gaaatgaaat tgaataaaac cccgggaaat gatgggttaa cagttgaatt ttattatacc 2760 ttttggccag ctttgggtga tttgttagta gaagtattga atgaaacata cgaaaggggg 2820 gaattaacgg catctcaaaa acaaggggta attaccttaa ttgagaagga agcgaaagat 2880 actctccata taaaaaatta tcgacccatc acgcttttga atgtagatta taaaattgta 2940 tctaaagttc tagcaaaaag aatgaaagag gttttaaatg aaataattca tcatgatcaa 3000 gttggatata taaaagatag aaatattggg gaagctgtac gattgataga tgacatgtta 3060 ttttattcta tgcattatgg ggaacaaggg aaagggtttt tgtgtgcagt ggattttgag 3120 aaagctttcg actctgtatc tcatagatat ttatttcaaa tattgaaatt gttcggtttt 3180 ggagattcat tttgctcttg ggtaaaatta ttgtataaag ggataagtag ttgtgttatg 3240 aacggtggtc actccacggg gtattttgaa atagaaaggg gagtaaggca aggggatcca 3300 ttatcgccat atttgttttt ggttgccatc gaaattttgg cgcatgcagt aaggagggac 3360 aacggtatta aagggattac atttggaaaa tctgaaatta ggcaagtgtt atatgcagat 3420 gatatgacaa tatttttgaa ggatattgat tcggttagaa ggttgcaata tatttttgaa 3480 tcatttgaaa aaattagtgg tcttaaagtg aataaaacaa agacacattt tatgtggatg 3540 ggtgaggatg agaacaaacc tgatgggcct ttatttggaa atttggttaa ggaaatacat 3600 attttagggg ttagttattc attagatcga agtttaaaag atgatttgaa ttataaagaa 3660 attctaagta aaataaaaaa attgcttgta tggtggaaac aaagagattt aactattatg 3720 ggtaaaatac atttgctaaa aacttatgcg ctttcaaaat taaattatat ttcatctctc 3780 gttattgtcc ctcattgggt atataaagaa gttgcaaaaa tttcatttga attcatatgg 3840 agggggaaag atagaattaa acgggcaata atgtatcagg attatgactt tggaggatta 3900 agaatgatta attttgaaat gtccgttaaa atacagcgca taatgtggat aaaacgtctt 3960 ttatatggag agaaaagttt gggatggaaa ttgttttttg atcattgctt acagtttgtg 4020 ggtggtagat ttattttttt atgtgattat gatttaaaca agattaaact cgttttagat 4080 attccaccat actatatgga aatgttgcaa gcatggcaag agacaagtaa tttaagatat 4140 ttggagggtt atattaatcc aattattttt aataatcaga atatatgtat aaatggaaaa 4200 agtatatttg atagatactt gtttgaaaga gggattgttc aactgaatca tttggttgag 4260 aaaggtcatg ttaagcctgt taaatatttt atgaacctcg gtatgaaagg taataatttg 4320 cttatgatta ttgatattta tgatgcgata cccaggttat ggaaggatga ttcagggtta 4380 atagaattcc tcgaggttga tttgataagc tttaatactt atttccatat ttctagtaaa 4440 aaaatacagt ttgtggatgt gggttcaaga acaatctatg attatttcat caaagcactg 4500 caacgaacgt atgatttgca ggtaagggat gggcaaaatg attatgattt tatagataaa 4560 gaattaaaag aaatatttgt tagaccaaga attactatac tcattagaaa acaacgtgaa 4620 tttcaattta aattattgca tggagccata tacactaatg agcatcttca tagatttggt 4680 tttgttggtg ataatttatg ttcgttttgt aagcaggaaa tagaaacata caaacattta 4740 tttttatctt gtgggagcgt tcaaaggtta tggcaggctt taatacaact ttttgagtta 4800 gatgaaatta aagatttaga atggcgagat atatttgttg ggttggtagg tagttcatat 4860 agaataaaaa tgtgtaatac tatcattttc atggtgaagt atgttacatt tatgtcaaga 4920 tcgggggggg cgagtactaa ctttagaaaa gatgaaaaaa agcattttta agtataggga 4980 tgaggaaaag aaaatagcaa ttaaaatggg aaagctagga tcacattttt taaagtggga 5040 gcagcttaag attaattaag atttgctttc ttctccaccg tgagcttgtt aaaagcgtaa 5100 ctcgattttg cggcctggat aacttattta gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5220 nnnnnnnnnn nntaaaagca tcaatattaa ccacgtttat tttattcaat tgtatgtcat 5280 ggtttgtatt acacatctgg agaaataaaa caaaattgtt aaaaaaaaaa aaaaaaaaaa 5340 aa 5342 // ID Ingi-4_SPur repbase; DNA; SPU; 3159 BP. XX AC . XX DT 01-FEB-2010 (Rel. 15.02, Created) DT 01-FEB-2010 (Rel. 15.02, Last updated, Version 2) XX DE A family of Ingi non-LTR retrotransposons - consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-4_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3159 RA Kojima K. and Jurka J.; RT "Ingi non-LTR retrotransposons from invertebrates."; RL Repbase Reports 10(2), 153-153 (2010). XX DR [1] (Consensus) XX CC ~6-bp TSDs. The 3' termini are composed by (CGAA)n CC microsatellite. XX FH Key Location/Qualifiers FT CDS 175..2853 FT /product="Ingi-4_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains, and a CCHC zinc-finger FT motif." FT /translation="MKMPNRAASQSNSAEGPLSRPALTVLSWNAEGISDAK FT EEVLAHMCKQMNCDVLCLQETHRGSDNPRPKIKGMKLAIERPHRQYGSAIF FT MNEKIRPDSTSYTHNNDIEVLNVTIKGLTISSIYKPPNISFSYPSTTTNRH FT IVIGDYNSHSTQWGYDTTGDDGALVETWAQNNDLKLIHDPKLPKSFASARW FT KRRYNPDLVFCSRLLAPTSRKFVAEPIPRSQHRPIGIQLTAVITPNKTPFK FT RRFNFAKADWPAFTEHLDHALTHLPADPKNYESFIDIVKKVSRTHIPRGCR FT TTYIPGIDEESSQLLANYTTAYDTDAFSEDTINLGEELISRISQRHRQMWQ FT HMIETTDLRHSSRKAWATIRKLGIDSTRAQQHYNVTADEVANQLLKNGKAP FT KTTNSHRHKLPGVDQNMSLFTRPISEEELQKGISTLHVNKAAGIDDIRSEQ FT IKHMGSVAQKWLLDMFNNCIENTCVPKQWLRTKVVAILKPGKDSNEAKNFR FT PISLLCQTYKLLERLILNRIGPHVDSQLNCEQAGFRPGKSTTGQLLNLTQH FT IEDGFQNNLITGAVFVDLSAAYDTVNHRRLQTKLHDITNDLKLTRFIQKMM FT QNRRFFVELDGQKSRWRKQKNGLPQGGVLAPTLYNIYTADIPSTENTRNFI FT YADDTCITAQHSTFEAVELHLNTALASLSEYYRANYLRANPSKTQVCVFHL FT KNREAKRELKLKWNNVQLNHCEHPVYLGVKLDRTLSFKKHIEKTIGKVESR FT NAIIGKLASSHYGADPKTVQSAAVALCMSSAEYACPVWSRSAHVKKLDTTL FT NNTYRKITGCLKPTKVEEIYHLAGIGSPNQRRTNTCLKERMKQATDDRHML FT HGYLQPHKRLISRHSFLDSVPPPEQNPPPSAKPVLIKGLT" XX SQ Sequence 3159 BP; 1010 A; 835 C; 676 G; 637 T; 1 other; ggggcacgca acaagagtcc tatctcgcac cccggggcaa cgtgtctgac acggccggtt 60 gtagcaacta cttcgaagat caagattaag attaagattg agaataataa taatttagac 120 ttagacttag agtaatatta agattacgat taagatcaag accaacataa cataatgaaa 180 atgcccaata gagcagcatc ccagagcaat tccgctgagg gacccctctc acgaccggcc 240 ctgacggtgc tatcatggaa cgccgaaggt atatcagatg ccaaggagga agtccttgca 300 catatgtgca aacaaatgaa ctgcgatgtg ctatgtcttc aagagactca ccgcggcagc 360 gacaatccac ggcccaagat caagggtatg aagcttgcca tcgagcggcc acatcgccaa 420 tatggaagtg ctatcttcat gaacgagaag atcagaccgg attctacatc ctatacccac 480 aataacgaca tcgaagtgct gaatgtgaca atcaaaggac taacgatctc ctccatctac 540 aagccaccaa acatmagttt ttcgtatcct tccaccacta ccaataggca tattgtaatt 600 ggcgattaca acagccacag cacgcaatgg ggatatgata ccactggaga tgatggagca 660 ctagttgaaa catgggccca aaacaacgac ctaaaactaa tccacgatcc aaagctccca 720 aagtctttcg ccagtgcccg ctggaagaga cgttacaacc cggatctagt tttctgcagc 780 aggctgcttg ctcccaccag tcgtaagttt gtagctgagc cgattccaag atcccaacac 840 cgacccatcg gcattcaact gactgcagtt atcacaccaa acaagacccc gttcaagcgc 900 aggttcaact ttgctaaggc agactggcct gctttcaccg aacaccttga tcatgcccta 960 acacatctcc ctgcagatcc aaagaactat gaatccttca tagatatagt caagaaggtg 1020 tcacgtacac atatcccaag aggctgccgc acgacataca ttccaggcat cgatgaggaa 1080 tcaagtcagc ttctggcaaa ctacaccaca gcctacgaca cagatgcctt ctcagaggat 1140 accatcaacc ttggagaaga gctcatatca aggatatctc aacgacatag gcagatgtgg 1200 cagcacatga ttgaaacaac agacctaaga cacagcagca ggaaagcgtg ggccaccata 1260 cgcaagctcg gaattgacag caccagagct caacagcatt ataatgttac ggcagacgaa 1320 gtagcaaatc agctgttgaa aaatggaaag gcccccaaga cgactaattc acacaggcac 1380 aaactacctg gagttgacca gaacatgtct cttttcacaa gacctatttc tgaagaagaa 1440 ctacagaaag gtatctccac gctacacgtc aacaaggcgg caggcatcga tgacatcaga 1500 tcggagcaga tcaaacacat gggctctgta gcacagaaat ggctgctaga catgtttaac 1560 aactgcatcg agaacacctg tgtcccaaaa cagtggctcc gaaccaaagt cgtcgctatc 1620 ctcaagccag gaaaggactc gaacgaagcc aagaactttc gaccgatctc gctcctgtgc 1680 caaacataca agctgcttga acgccttatt ctcaacagaa ttgggcctca cgttgacagc 1740 caactgaact gtgagcaggc aggtttccga ccaggaaaat ccaccacggg acaacttctc 1800 aacctgaccc aacacatcga agacggtttt cagaacaacc tcatcacagg tgcagtattt 1860 gtggatttat ctgcggctta tgacactgtc aatcaccgaa ggctacagac aaaacttcat 1920 gacatcacaa atgacctcaa actcaccaga ttcattcaga agatgatgca gaacagacgc 1980 ttctttgtcg aactggatgg gcagaagagc agatggcgga aacagaaaaa cggtctcccc 2040 cagggtggcg tcctggcgcc aacactctac aacatataca ctgctgacat cccttcaaca 2100 gagaacactc gaaacttcat ctatgcagat gacacctgca tcacagccca gcatagtacc 2160 ttcgaagctg ttgaactcca tctcaacaca gcgctcgcaa gcctttcgga gtactacaga 2220 gcaaactacc tacgggcaaa cccatccaag actcaggtgt gtgttttcca cttgaagaac 2280 agggaggcaa agagagaact gaagctaaag tggaacaatg tgcagcttaa ccactgcgag 2340 catccagtgt atctaggtgt aaaactcgat cgcactttat ccttcaagaa acacatcgag 2400 aagacaatag gcaaagtaga atctcgaaat gccatcatcg ggaagctagc atcttcacac 2460 tatggcgctg accccaaaac tgtacaaagt gcagctgttg ccctatgcat gtcatccgca 2520 gaatatgctt gcccagtttg gagcagatca gcccatgtga agaagcttga caccacactc 2580 aataacacat atcgaaagat aacaggctgc ctgaaaccaa caaaagttga ggagatatat 2640 cacctcgctg gcattggatc tcctaaccaa aggcgcacta acacctgcct aaaggaacgg 2700 atgaagcagg cgacagatga cagacacatg ctacacggat acttacaacc ccacaaacga 2760 cttatatccc gacacagctt cctcgattct gtcccaccac ctgaacagaa tcctccacca 2820 tcagccaagc ccgtactcat caaaggctta acctgaagtg gccggagtgg caatgcctaa 2880 atcgaatgcg gacgagaatg gggcggtgta aggtcaatat ggcaagatgg ggctatgccc 2940 atgaaggaga tactctctgc gactgcggag agactcagac gatggaccac ctcttgcagt 3000 gcggcggaac gggttgcaca gatgaagacc tgtcccttgt taatgaaacg gccattgcag 3060 caatcgagcg atggaagaac ttaatttaat ttaatttact tctaagttaa ggaactttac 3120 attactatct tgatctaagg agacacgaac gaacgaacg 3159 // ID RTE1X_SP repbase; DNA; SPU; 3561 BP. XX AC 048B05; XX DT 14-JUN-2005 (Rel. 10.06, Created) DT 14-JUN-2005 (Rel. 10.06, Last updated, Version 1) XX DE RTE-like non-ltr retrotransposon from sea urchin. XX KW RTE; Non-LTR Retrotransposon; Transposable Element; RTE1X_SP. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3561 RA Jurka J.; RT "RTE1X: RTE-like non-ltr retrotransposon from sea urchin."; RL Repbase Reports 5(6), 158-158 (2005). XX DR BCM-HGSC; 048B05; Positions 1360 4920. XX CC The sequence is relatively new, with long ORF homologous CC to RTE elements. The 5'-end has not been determined. XX FH Key Location/Qualifiers FT CDS 623..3298 FT /product="RTE1X_SP_1p" FT /translation="KMCPIHSLFLLTWLERRVQWVHHYSGKKDQMKIGTWN FT VRTLMDTQNSNRPERRTAFVARELRQHDIDIAALQETRLAGDGQLTETAGG FT YTFFWKGKSMGEPRIHGVGFAIKNEIMRTMDQVPLGINERLMTLQMNLSKG FT RKATLISAYAPTLMAEAEEKESSYSSLDTLLTQIPRSHKLLLLGDFNARVG FT KDSTIWNGVLGKEGIGNVNDNGHRLLTKCAEHRLTITNTLFRQKNRQKTSW FT RHPRSGHWHMIDYIIVRQDDKKDVNITRAITASDACWTDHRLIRSVMAISL FT QPKHRKTKKNRAGYNLRSLEQPSVQEAFKVSMEKSIQERNPSINDDVEKYW FT NDLKDAIVKSCKETLGKPERYHEDWFDENDKEITKLISDKRSAFTTWQNDI FT RNANKRAAYHSLRSLIQCRVRELKNQWWLKKAEELQKLADENKSRDFFTAT FT RKVYGPTVNGVRPVLGKDGSLLKDKDKIRERWKEHFSDLLNQPSSVETTII FT DNFPQSTTLDNLSDAPTIDEVTSAVKAMKNGKAAGLDGIPAEVYKLAGSEL FT HRKLHNLYKLIWEQETVPSELRDALIVTIFKKGDKSSCDNYRGISLLSVAG FT KILARILSQRLSIVAEEVLPESQCGFRPGRGTIDMIFSIRQIQEKCREHHQ FT DLYMAFIDLTKAFDSVDRQTLWKILTHVGCPEKFVKIIRSLYEDMNASVLV FT AGEASESFAVQTGVKQGCVIAPSLFSLFVSSVLQLVNQRQPPGINLRYRID FT GQLFNLRRLKAISRTTDVTVNELQYADDNAIVASSEEDLQAAMDAFSYAYS FT VFGLKLNTRKTQILYQPKPGITHEQQCPPCIKVDGQPLTNVERFTYLGSCL FT SSKVDIYDEIQQRLSASSSAFGRYSHSFTQIYANLTLTL" XX SQ Sequence 3561 BP; 1127 A; 799 C; 777 G; 858 T; 0 other; agcacactca ttccataccc tcttaccatc acacaatcat gtcacacaat gttagtcagg 60 tcaggcattt gtctgctact ggtaacatgt agtccagtac aacctgtttc atggtcgagt 120 cgtcggcgac taaactgaca cacccacctc aggttttttt cttttttacc aaggtgagga 180 gggtgcgtga acaccccgca ggattaaaaa caagacctgt caaagggcgg aggagtcctt 240 atacgggacc aacggccatt cactgcaact gttctacatc ttccgatcgt ctagattttc 300 ttgccattgg actcaggtgt ggtacagcca agtatgtgga tttcaggtgt gcaactgaga 360 cccactttaa aaaccacgca cagcttctgc ttgcagcaca accaacccta ccaaagccct 420 atggcgattg gagcgtgatg acgaggacag gatcgtgaaa tctgggagcc cttagtcact 480 aaccagcaca taggcggtga aggttaaatc agtcgctcgg ctcttggact agggacagga 540 gagcagttcg gtagttgcct tcatgactga gcagccctat ttaggatcca ctctgctcac 600 ccatatcttg ggaaggggct agaaaatgtg ccctatacat agtctgttcc tactaacctg 660 gctggaacgc cgcgtccagt gggttcacca ttacagcggt aagaaagatc aaatgaaaat 720 tggtacatgg aatgtacgaa cacttatgga cacacaaaac agcaaccgtc ctgaaaggcg 780 tactgccttt gtggcgcgtg agctgagaca acatgacatt gatattgctg ccctacaaga 840 gacaagatta gccggagatg gacaattaac agagacagca ggtgggtaca ctttcttttg 900 gaaaggaaag agtatgggag aacccagaat ccatggtgtt gggtttgcta tcaagaatga 960 gatcatgaga accatggatc aagtgccact aggcataaat gaaagactaa tgactcttca 1020 aatgaatctc agcaaaggca ggaaagccac cctaatatct gcttatgctc ctacgctgat 1080 ggctgaagcc gaagaaaagg agtcttccta ctcaagcctt gatactcttc tcactcagat 1140 cccacgcagt cacaaactcc tgctacttgg tgacttcaat gccagagtgg gaaaggatag 1200 cacaatttgg aacggtgtgc ttggtaaaga aggtattggt aatgtcaatg acaatggcca 1260 tcgactactt accaaatgtg ctgagcacag actaaccatc acaaatacac tctttcggca 1320 gaagaataga caaaaaactt cttggcgtca ccctcgatca ggccattggc atatgattga 1380 ctacattatc gtcagacagg atgacaagaa agatgtgaac atcacaagag caataactgc 1440 atctgatgct tgttggaccg atcacagact gataagatct gtaatggcaa tctctttaca 1500 acccaagcat cggaagacaa agaaaaacag agcaggatat aatctaaggt cacttgaaca 1560 acccagtgtg caagaagcct tcaaagtgag catggagaaa tccattcaag agaggaaccc 1620 tagtatcaat gatgatgtgg agaaatattg gaatgaccta aaggatgcaa ttgtaaagtc 1680 ttgcaaggaa actttaggaa agccagaaag gtatcatgaa gattggtttg atgagaatga 1740 taaggaaatt actaaactca tatcagacaa acgatcggcc ttcactacct ggcaaaatga 1800 catacgtaat gccaataaga gagcagcata tcattctcta agatccttga tccaatgtag 1860 agtgagagaa ttaaaaaatc agtggtggct gaagaaagct gaagaacttc aaaaactcgc 1920 tgatgaaaac aagagcagag acttcttcac tgccactagg aaggtgtacg gtccaactgt 1980 caacggagta agacctgtat tagggaagga tggatcgctc ctcaaggaca aggataagat 2040 tagagaacga tggaaagaac acttttctga cctcctcaat caaccttctt cagtggaaac 2100 aacaataatc gacaattttc cccagtcaac gactctagat aatttgtcag atgcaccaac 2160 cattgatgaa gtgaccagtg ctgtcaaagc tatgaaaaat ggtaaggcag ctggactgga 2220 tggcatccca gctgaagtct ataaattagc tggatctgaa ctacacagaa aactacataa 2280 tctctataaa ttgatctggg agcaggaaac cgtcccatca gaactgagag atgctctaat 2340 agtgacaatc ttcaagaagg gagataaatc ttcatgtgac aattaccgtg gaatctctct 2400 tctctcagtt gcagggaaaa tactagctag aatcctgtca caacgtctat caattgtcgc 2460 cgaggaagtc ctacctgaat cgcagtgtgg ttttaggcct ggacgaggaa ccattgatat 2520 gatattctca atccggcaga tacaggagaa atgtagagaa catcatcaag atctgtacat 2580 ggccttcata gatctcacca aggcttttga ttcggtagat cgtcagacac tgtggaaaat 2640 acttactcat gtcggatgtc ctgaaaaatt tgtcaaaatc attaggtcac tctacgaaga 2700 catgaatgcc tcggtgttag ttgctggtga agcatcagag agttttgcag tacagacagg 2760 agtaaagcag ggatgcgtta tagctccaag cctcttctca ctctttgtct cttcagtgct 2820 gcagctcgtt aaccaacgac aaccaccagg aataaacttg agatatcgca tagatggtca 2880 actatttaac cttcgccgac tgaaagccat atctcggacc acagatgtca cagtgaatga 2940 actccagtat gcagatgaca atgctatagt tgcctcctct gaggaagacc ttcaagcagc 3000 aatggatgct ttcagttatg cctactctgt atttgggctt aaactgaaca ccaggaaaac 3060 tcagatcctg taccaaccaa agcctggaat cacacatgaa caacaatgcc caccttgcat 3120 caaagttgat ggacagccac tgaccaatgt tgagagattc acgtaccttg gcagttgtct 3180 ctcatcaaaa gtagatattt atgatgaaat acagcagcgg ttgagtgcat ctagctcagc 3240 gtttgggcgt tactcacaca gctttacaca aatctatgca aacctgaccc tcacactctg 3300 attccaccgc ttcacacata tctagtcaca tcacccattc cacactctca caccattata 3360 cacactctga ttaatcacac cgtttacaca gatctataag ctcacccatt ccacactctc 3420 acgcctggtt cttagtaaat agtgagtgga cgaattggca attcatggag ctattaatag 3480 tggacgaacc gatggtaggc caaatgatag tagacgagtt ggtaattgga cgaactggca 3540 atagacgaat tggaaataaa c 3561 // ID SU7N33 repbase; DNA; SPU; 195 BP. XX AC X05414; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus histone H4-H2B spacer 7N33 intermediate repetitive DE sequence. XX KW Repetitive sequence; SU7N33. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-195 RA Yager N.L., Kaumeyer F.J., Lee I. and Weinberg S.E.; RT "Insertion of an Intermediate Repetitive Sequence into a Sea RT Urchin Histone-Gene Spacer."; RL J. Mol. Evol 24, 346-356 (1987). XX DR GenBank; X05414; Positions 20 214. XX SQ Sequence 195 BP; 84 A; 29 C; 26 G; 56 T; 0 other; tcaagttcaa gttcaagttc gtttatttac actcatcatt aaaaatacaa gaacatatac 60 aatcaaatac ggaataatca cacataaaat atcatacatt caataacaac aaaataacat 120 aacataatgg gagtgaaggg atgagctaaa aaggagtatg gtccttatgt tagagttcat 180 tccttagtat aatat 195 // ID Ingi-3_SPur repbase; DNA; SPU; 3158 BP. XX AC . XX DT 01-FEB-2010 (Rel. 15.02, Created) DT 01-FEB-2010 (Rel. 15.02, Last updated, Version 2) XX DE A family of Ingi non-LTR retrotransposons - consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Ingi-3_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-3158 RA Kojima K. and Jurka J.; RT "Ingi non-LTR retrotransposons from invertebrates."; RL Repbase Reports 10(2), 152-152 (2010). XX DR [1] (Consensus) XX CC ~7-bp TSDs. The 3' termini are composed by (CGAA)n CC microsatellite. XX FH Key Location/Qualifiers FT CDS 135..3116 FT /product="Ingi-3_SPur_1p" FT /note="includes endonuclease and reverse FT transcriptase domains, and a CCHC zinc-finger FT motif." FT /translation="MMADTSTCVLQLNAEGPYPLKARSDYPHIAKENWVNV FT ICLQETHCETEEQLHIEGFDLICFIPHKKHGIASYVKQGMKASTTGRSPVN FT SALQWSTFEAMGTHFCNLYKPPPVDVEIILFPKMPRNSFVCGDFNSRSTAW FT GYPXTNKNGKLIFEWLESQELVILYDSKDNPTFYSGSXKSWTCPDLSLVSS FT NIRHTCSRTVLPKFPRSGHCPIIISSDIKLQLSNLPKKRWNFRKADWPKFQ FT ELTNNKLTSRLPDPSTSNVNDSYSAFCSMLHQAAKLSIPRGRRHPYIPCWD FT EECDRLYESCAKSKTIEEREAVGNDLLXSLGEKRRIRWEEEVSEINFTHSS FT RKAWTTINKLTGRSSAPKQCPVTANSIASVLVNNGKWQDKTTEAKAHSRSV FT NSEIKNLLKSTPESTSMSEAFTLDEVETALKSIKSGKAPGNDNIHTEFXXN FT MSRKATSWLQAFLSTCMTTSTIPSKWKTAKVIAILKPKKPADEPKSYRPIS FT LLSHIYKLLERLLLARIVDTVEEKLPTTQAGFRKGKSTTDQVVRLVNNIET FT AFQKKQKFGAVLVDLTAAFDTVWHRGLYLKTLQTIPDVRIVKFIMLLVQDR FT SFVLETSNGECSRKRKLRNGVPQGSVLAPILFNIYVSDMPKGECMQYSYAD FT DTALGFDNHSFEAIKTSLEKDLKMLAEFFNRWHLKMSIPKTVSSVFHLANR FT CANRELNISLDGSRLNFVSTPKYLGVTLDRSLTFHEHAKATAQKTQARVSL FT LKKLAGTGWGANFTTLRTSTLALAFSTAEYAAPAWSHSTHVHKVDVVLNDA FT MRLISGTLTATPVSNLPILSGIPPAQLRRDAQYTKLAQKHDRDKCLVPAPS FT AFEGQRLPRRHFATQAAELPLEKPPSTLATWIAKRWSDLQWNSSTTNLKEF FT IPKPCAKPSGSDLPRKAWVNLNRIRTGVGRTQYFLHKIGAXSSPNCACGEI FT QTMDHVIDDCPIYKSPHGASGLRELDDETICWLNKDLPI" XX SQ Sequence 3158 BP; 920 A; 889 C; 648 G; 692 T; 9 other; aactaaagca acaatttgaa gtctatcatc gcgatcttat cgccagtagg cctacatctc 60 tagccctcta tcatcagaag agtttcctac gcagttcctg gaagcacgtg tccttttcag 120 gacaagccat caagatgatg gctgacacct cgacctgcgt actccaactc aacgctgaag 180 gcccttaccc gctcaaagcg agatctgatt atccccatat tgcaaaggaa aattgggtca 240 atgttatctg cctccaagaa acacactgtg aaacagaaga acagcttcac atcgaaggtt 300 tcgatctgat ctgcttcatw ccacacaaga agcatggwat tgcatcctac gtcaaacaag 360 gcatgaaagc atccaccacc gggcgatctc ctgtgaactc agctctacag tggagcacct 420 ttgaagctat gggaacccac ttctgcaatt tgtataagcc accacctgta gatgttgaaa 480 tcatactctt cccaaagatg ccccggaact cctttgtctg cggagatttc aacagtcgca 540 gcactgcctg gggataccct aasaccaaca agaatggaaa gctcattttt gaatggcttg 600 aatctcagga gctagtgata ctgtatgaca gcaaggacaa ccccacattc tactcaggga 660 gcmacaaatc atggacttgc cccgacctgt cactggtttc atcaaacatc agacacacct 720 gctcaagaac tgtccttcca aagttcccga ggtctggcca ctgtccaatc atcatctcaa 780 gcgacatcaa gcttcaactc tccaacctac caaagaagag atggaatttc agaaaagctg 840 actggcccaa gttccaggaa ctcacaaaca acaagctaac atctcgactg ccagacccct 900 ccaccagcaa tgtgaatgac tcctactctg ctttctgctc catgttacat caggcggcaa 960 aactctccat ccccaggggc aggagacacc cgtatattcc atgctgggac gaagaatgcg 1020 accgtctgta cgaatcctgc gctaagtcca agaccattga agaaagagag gctgtaggga 1080 acgacctgct gmtatcacta ggagaaaaga ggaggattag atgggaagaa gaagtctctg 1140 agatcaactt tacccactct agtcgcaagg cctggactac catcaacaaa ctcactggtc 1200 gaagcagcgc tccaaaacag tgtcctgtta ctgcaaactc catcgcttca gtcctagtta 1260 acaatggaaa gtggcaagat aaaaccactg aggccaaagc ccactctcgc tckgtgaact 1320 ctgagataaa gaacctcctc aagtccactc cagagtcaac ctccatgtct gaagccttca 1380 ccttggatga ggttgaaact gcactgaaat caataaagtc cggcaaagca ccaggcaatg 1440 ataacatcca cacagagttc ckcaakaaca tgagtcgcaa agctacttcc tggctacaag 1500 cctttctctc tacctgcatg acaacatcca ctattccatc aaaatggaag accgctaaag 1560 ttattgccat tctgaagccc aagaagcctg cagacgaacc caagagctac cgtccaatca 1620 gcctgctatc acacatctac aagctacttg aaaggctgct acttgccaga atcgttgaca 1680 ctgtcgaaga gaagctacct actacacagg caggtttcag gaaaggtaaa tcaaccaccg 1740 accaagtagt caggcttgta aacaacatag agacggcctt ccagaagaag cagaagtttg 1800 gtgcagttct tgtcgacctt actgcggcat ttgacacagt atggcaccgt ggcttatacc 1860 tcaagaccct gcagaccatt ccagatgtaa gaattgtgaa atttatcatg ctgcttgtac 1920 aagaccggtc atttgtcctt gaaacatcaa acggcgaatg cagtaggaag aggaaactcc 1980 gcaatggtgt gccgcaaggc tctgtcctcg ctccgatact tttcaacatc tatgtctctg 2040 atatgcccaa gggggaatgc atgcagtatt cctacgcaga cgacaccgca ctggggttcg 2100 acaaccactc cttcgaggca atcaaaacat cactggagaa ggacctgaag atgctagccg 2160 agttcttcaa cagatggcat ctcaagatga gcataccaaa gactgtatcc tccgtcttcc 2220 acctggctaa ccgatgcgcc aaccgagagc tgaatatctc actagatggg tctaggctga 2280 acttcgtctc aacaccaaag tacctaggtg tcactcttga ccgaagcctc accttccacg 2340 agcatgccaa agccacagct caaaagaccc aagccagagt gtctctccta aagaagcttg 2400 cagggaccgg atggggagct aatttcacca cccttcgcac ctccactcta gctcttgcct 2460 tctccactgc cgagtatgct gcacctgcat ggagccacag cacccatgta cacaaggttg 2520 atgttgtcct caatgatgct atgagactaa tcagcggaac actcactgca acacccgtca 2580 gcaacctgcc aatattatct ggcataccac cagctcagct cagacgagat gcgcagtaca 2640 ctaagcttgc ccaaaagcat gacagagata aatgccttgt tcctgccccc tctgcctttg 2700 aaggacagcg tctccctaga agacactttg caacacaggc tgctgagctg ccgcttgaga 2760 agcccccctc caccttagcc acttggatag caaaacgctg gtcagacctg cagtggaatt 2820 cgtccactac caacttgaag gagttcatcc caaagccctg tgcaaaacca agtggcagcg 2880 acctcccaag aaaagcctgg gtcaacctaa accgtatcag aactggagtt ggccgtacac 2940 aatatttcct acataaaatt ggagctgawt catcaccaaa ctgcgcctgt ggagagatcc 3000 aaactatgga tcatgtcatc gatgattgtc cgatctacaa atccccccac ggcgcttccg 3060 gacttcgtga gctcgatgat gagacaatct gttggcttaa taaggatctt cctatctaga 3120 tgatgtactc cctgatattc tttgcacgaa cgaacgaa 3158 // ID D88I repbase; DNA; SPU; 119 BP. XX AC X01062; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.drobachiensis repetitive sequence D88I. XX KW Repetitive sequence; D88I. XX OS Strongylocentrotus droebachiensis OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-119 RA Johnson A.S., Davidson H.E. and Britten J.R.; RT "Insertion of a short repetitive sequence (D88I) in a sea urchin RT gene: a typical interspersed repeat?."; RL J. Mol. Evol 20, 195-201 (1984). XX DR GenBank; X01062; Positions 37 155. XX SQ Sequence 119 BP; 39 A; 30 C; 21 G; 29 T; 0 other; tttattatat acctcactta agaaatccag ccatctgatc ggtcaaaatt gcaggccgag 60 ggcaatggca caattgtaac ctccccgaga gcgtataaaa ccaactatgt ctctcaaag 119 // ID TU1 repbase; DNA; SPU; 775 BP. XX AC X00146; XX DT 28-SEP-1995 (Rel. 1.08, Created) DT 28-SEP-1995 (Rel. 1.08, Last updated, Version 2) XX DE S.purpuratus transposable element TU1 fragment. XX KW transposon; Repetitive element; TU1. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-775 RA Liebermann D., Hoffman-Liebermann B., Weinthal J., Childs G., RA Maxson R., Mauron A., Cohen N.S. and Kedes L.; RT "An unusual transposon with long terminal inverted repeats in the RT sea urchin Strongylocentrotus purpuratus."; RL Nature 306(5941), 342-347 (0001). XX DR GenBank; X00146; Positions 609 1383. XX SQ Sequence 775 BP; 188 A; 231 C; 150 G; 206 T; 0 other; ggttccatga cacatgctcc gccgacgatt gctccgccga catttactcc gcaaaacgcg 60 acaattgctc cgcgacattt gctccgcgac atttgctccg acgtcaaatg ctccgccgac 120 agttgctccg ccgacagttg ctccgccgac aattgctccg ccgacaattg ctccgcctga 180 agcgacaatt gctccgccga catttgctcc gccgacaatt gctccgccga catttgctcc 240 gccgaagcgc acctgctccg ccgacatttg ctccgccgac aatgctccgc cgacaacgct 300 ccgcctgaag cgacaatgct ccgccgactg ctccgcctga agcgacaatg ctccgccgac 360 attgctccgc cgacaattgc tccgacgaca tgctccgcat gaagcgacac ttgcaccggg 420 tgacatttgc tccgcgacat ttgctccgcc caaaaagtgt cccattaaat acaaatgcta 480 ctagtactac gacaaatgct tcgccgacaa tatttttttt tcacgggttg tttttgtttc 540 tttctttttt tcttcatttt ttgaatgcat ttcatgacat tatgtaaatg aaatgaaatg 600 aatgaatgtt gataatgtgg gaggaaaagc agtttgccta aaagtcattt cgaatatact 660 gaaataactt tccatctatc actgtacgtc ccacataata aacactaaac actcattaca 720 tgtcatggga agtttttttt tttaaagtta gagcagctaa gccacatccc ccgtg 775 // ID Ingi-2_SPur repbase; DNA; SPU; 2827 BP. XX AC . XX DT 28-FEB-2009 (Rel. 14.02, Created) DT 12-JAN-2010 (Rel. 14.02, Last updated, Version 3) XX DE Ingi-type non-ltr retrotransposon :consensus sequence. XX KW Ingi; Non-LTR Retrotransposon; Transposable Element; Jockey2_SP; KW Ingi-2_SPur. XX OS Strongylocentrotus purpuratus OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea; Euechinoidea; Echinacea; Echinoida; OC Strongylocentrotidae; Strongylocentrotus. XX RN [1] RP 1-2827 RA Jurka J.; RT "Jockey-type non-LTR retrotransposons from sea urchin."; RL Repbase Reports 9(2), 495-495 (2009). XX RN [2] RP 1-2827 RA Jurka J.; RT "Re-classified as Ingi."; RL Direct Submission to Repbase Update (12-JAN-2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(121..2109,2004..2825) FT /product="Jockey2_SP_1p" FT /translation="MTLIAERPHDQYGSAIFARNGLAVDKSYLSDVNNIEV FT LSIDLMGITVSSVYKPPQEPFDLPGRATDGRMNVVIGDFNSHSISWGYREM FT NEDGELVETWADANQLSLIHDAKLPASFNSARWRRGYNPDLIFTSTRIANQ FT CEKVVLDPIPHSQHRPIGLKVNAVITPRAVPFRRRFNLRKANWEKFAKDFD FT SYIQDLPATPQNYDTFVELMKKSSRRNIPRGCRTSYIQGLTDHSKVMYEDY FT IEHFQMDPFSEETLESGENLTKEIGESRRRKWQEFIQSTDMTHSSRKAWKT FT IRILGNDYTKAQPRSEVTADQVAHQLLLNGRGNPDHHPRRARLPKVPDALS FT SQDDPGFTRPFTVNDLLAAIKAMKNNKAAGLDDILCEQIKQLRPGALNWLL FT KMFNECLGTNNVPKLWRKSKVIALLKPGKDAASPKSYRPISLLCHTYKLFE FT RLILNRIAPFVDEHLIPEQAGFRPGKSCTGQLLNLTQFIEDGYESKLITGA FT AFVDLSAAYDTVNHRILTRKIFELTKDVRLTGLIQTLLSNRRYFVVLNGNR FT SRWRRQKNGLPQGSVLAPLLFNVYTNDQPIHPNTRSFLYADDLCIATQNQS FT FVKLEESLSDALAGLIPYYATNHLRANPDKTQISAFHLKNRDANHQLRISW FT YGKRLKHTPNIQSTNSDKRIPPQEQGCQPSTKDQLVREKAEAHSQHPVYLG FT VTLDRSLTYKNHIANTKAKVGARNSILKKLANTNWGTDARTIRTTALALCF FT SAAEYASPVWSRSAHAPKIDPALNSSCRAITGCLRPTKVEDIYLLCGIAPP FT HVRRLVLSQKEKDKQENNPLHPLFEQQPVGKRLKSRHSFLHSVEPLNTSPH FT NQRMTLWSNHLQTTPHKLSLSPKESLATGSSETWPTWLSLNRLRTGYGRCR FT VLMQRWGLGDEQTACECGQEQTMEHLLVCPLLP" XX SQ Sequence 2827 BP; 813 A; 813 C; 621 G; 580 T; 0 other; ggtctttcag gcgccaaaca agaactcttg gctgacctat gcataacaac caactgtgac 60 attctctgcc tccaggagac ccatcgcggg cctacacgag ttcgccctcg tatctccgga 120 atgaccctca tcgcagagag accacatgac caatacggaa gtgcaatctt tgcccgtaat 180 ggtcttgctg tggacaaatc ttacctatca gacgtcaata acattgaagt cctttctatt 240 gacctaatgg gaatcaccgt aagctccgtg tacaagccac ctcaagagcc tttcgacctg 300 cccggcagag ctactgacgg caggatgaat gtggtcattg gtgatttcaa cagccatagc 360 atttcctggg gatatagaga aatgaacgaa gatggtgaac tcgttgagac atgggcagat 420 gctaaccagc tgtccctcat tcatgacgct aagcttcctg cctctttcaa cagtgcaagg 480 tggagacgtg gctacaaccc tgacctgata tttacatcta ccaggattgc taaccagtgc 540 gagaaagtcg ttctcgaccc aatccctcac tcccagcacc gaccgatagg gcttaaggtt 600 aatgcagtca ttactccacg agcagtaccc ttccgacgtc gtttcaacct gaggaaggca 660 aactgggaaa agtttgctaa ggactttgac tcctacatcc aggacctacc tgccaccccc 720 caaaactacg acacctttgt agagttgatg aagaaatcgt caaggcgtaa catcccccga 780 ggatgtcgca caagctacat tcaaggcttg acggaccact ccaaggtgat gtatgaagac 840 tacatcgaac acttccagat ggaccccttt agtgaggaga cactggaatc tggagaaaat 900 ctgaccaagg aaattggtga atctagaagg aggaagtggc aggaattcat tcaatccact 960 gacatgacac atagcagcag gaaagcatgg aaaacgatcc ggatactggg caatgactat 1020 acaaaggccc aaccaagatc tgaagtcact gccgaccaag ttgcccatca actcctattg 1080 aatggtcggg gaaaccctga ccatcacccc agaagagcca gactccctaa ggtcccagac 1140 gctctaagct ctcaagatga cccaggcttc actagaccgt tcaccgtgaa cgacctgctt 1200 gctgccatca aagcaatgaa aaacaacaaa gctgctggac ttgatgacat cctctgcgag 1260 cagatcaaac aacttagacc aggcgccctc aactggcttc tcaaaatgtt caacgaatgt 1320 ttgggcacca acaacgtccc aaagctctgg aggaaatcca aagttattgc cctattgaag 1380 cctggtaaag acgcagccag tccaaagagc tacaggccta tctccctact gtgccataca 1440 tataagctgt tcgagcggct tatcctcaac cgcatcgccc cattcgtgga cgaacatctc 1500 attccagaac aagcagggtt taggccagga aaatcatgca ctggccaact cctaaacctc 1560 actcagttca tcgaggacgg gtatgagagt aagctaatca ccggagctgc tttcgttgat 1620 ctctctgctg cctacgacac cgtgaaccac agaatcctta ccaggaagat ctttgagctg 1680 acaaaggacg tgagactgac tggactcatc cagacgttgc tgtccaatcg gcgatatttt 1740 gtggttctca atgggaatcg cagcagatgg cgcagacaga aaaatggcct accacaagga 1800 agtgtgctcg caccgttact ctttaacgtg tacacgaatg accaaccgat ccacccaaac 1860 accaggagct tcctctacgc cgatgatctc tgcatcgcca cccagaacca gtcttttgtg 1920 aagttggagg agtccctcag cgatgccctg gccggtctca tcccatacta cgcgaccaac 1980 cacctgagag ctaaccctga taaaactcag ataagcgcat tccacctcaa gaacagggat 2040 gccaaccatc aactaaggat cagctggtac gggaaaaggc tgaagcacac tcccaacatc 2100 cagtctactt aggcgtcaca ctcgatcgct cccttaccta caagaaccac attgccaaca 2160 caaaggcaaa agttggagcc cgcaacagca tcctcaagaa gctagccaac accaactggg 2220 ggactgatgc cagaacaatc cggacgacag ccctcgcgct ttgcttctct gctgcggagt 2280 atgcatcacc agtatggagt aggtcggccc atgcacccaa gattgaccca gctctaaatt 2340 catcttgcag agcgatcact ggatgcctaa ggccaactaa agtagaagac atctacctgc 2400 tctgcggtat tgcccctcca cacgtcagaa ggttggtctt gtcccagaaa gaaaaggaca 2460 aacaagaaaa caatccactc cacccactct tcgaacaaca gccagtgggc aagcggctca 2520 aatccagaca cagctttctg cactctgtag agcctcttaa tactagccct cacaaccaaa 2580 ggatgacttt gtggtctaac caccttcaga ccactccaca taaactctcc ctcagcccga 2640 aggaatccct cgcaaccggc tccagtgaga cttggcctac ctggcttagc ctcaaccgcc 2700 taagaactgg ctacggtcga tgcagagtcc taatgcagag gtggggtcta ggagacgaac 2760 aaacagcatg tgaatgcggc caggaacaga caatggaaca cctgctagtc tgcccactcc 2820 tgccaga 2827 // ID SPRP1 repbase; DNA; SPU; 190 BP. XX AC J01194; XX DT 28-SEP-1995 (Rel. 1, Created) DT 28-SEP-1995 (Rel. 1, Last updated, Version 1) XX DE S.purpuratus repetitive sequence (clone lambda-2109B-18). XX KW Repetitive sequence; SPRP1. XX OS unidentified sea urchin OC Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; OC Echinoidea. XX RN [1] RP 1-190 RA Posakony W.J., Scheller H.R., Anderson M.D., Britten J.R. RA and Davidson H.E.; RT "repetitive sequences of the sea urchin genome: iii. nucleotide RT sequences of cloned repeat elements."; RL J. Mol. Biol 149, 41-67 (1981). XX DR GenBank; J01194; Positions 1 190. XX SQ Sequence 190 BP; 44 A; 40 C; 39 G; 67 T; 0 other; tcgagtgtat aaactgtgtt gttatcagtg gcgtcgatcg ctcgacgttt cattaaatta 60 ttagagaaag aagacgattc gttgtactgt tttcgactcc taatccttgt ctgaataaag 120 tttcccccct cccgcgcgaa acgcggaagc tttggcgttt catttgatta taactcttaa 180 tccttgtttg 190 //