ID   MARE1       repbase;    DNA;    SYN; 945 BP.
XX
AC   .
XX
DT   26-JUN-2006 (Rel. 11.06, Created)
DT   28-JAN-2010 (Rel. 11.06, Last updated, Version 6)
XX
DE   Mammalian-wide repeat - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARE2; MARE1.
XX
OS   Mammalian expression vector pCMV-Script
OC   other sequences; artificial sequences; vectors.
XX
RN   [1]
RP   1-945
RA   Jurka J.;
RT   "MARE1: An ancient mammalian repetitive element.";
RL   Repbase Reports 6(6), 344-344 (2006).
XX
RN   [2]
RP   1-945
RA   Gentles AJ., Wakefield MJ., Kohany O., Gu W., Batzer MA.,
RA   Pollock DD. and Jurka J.;
RT   "Evolutionary dynamics of transposable elements in the
RT   short-tailed opossum Monodelphis domestica.";
RL   Genome Res 17(7), 992-1004 (2007).
XX
RN   [3]
RP   1-945
RA   Jurka J., Kapitonov V.V., Kohany O. and Jurka MV.;
RT   "Repetitive sequences in complex genomes: structure and
RT   evolution.";
RL   Annu Rev Genomics Hum Genet 8, 241-259 (2007).
XX
RN   [4]
RP   1-945
RA   Smit A.F.A.;
RT   "MamRep1161 - consensus.";
RL   Direct Submission to Repbase Update (09-MAY-2008).
XX
DR   [4] (Consensus)
XX
CC   It is detectable in variable number of copies ranging from
CC   hundreds to as many as 3000 copies per mammalian genome.  MAREs
CC   may be useful markers for mammalian phylogenetic studies.
CC   Classified as Mariner by Arian Smit.
XX
SQ   Sequence 945 BP; 244 A; 285 C; 142 G; 274 T; 0 other;
     caggcatccc caagttacaa acacccgact tgcgaacgtc ccgtacatac gaacgccggt        60
     tgcacatcgc ctgatgcccc ctcacccacc ccaccctgcc ctcccgccca ctccggacag       120
     caaccaagct gtcctgggcc gatggcgcca cctggtggcc agcgcgggga actgtctgac       180
     ccaacgtctc ttccccacca cctcctttct tcccctcaag gggaccatgc acacgctgtg       240
     ccctttctcc cttctctttc accattcaca gctcagttaa ttccacctca ggcaatctct       300
     ttctcacatg tacacacaca tcctctttaa ttctcctccc tcctctctct cttccaactc       360
     ttgcccagtt acctcaggaa aatctttctc cttccttcct ccctctccct ttcttcattc       420
     catttgtgag ccaaaaaatg accctaatca tggctgataa gcataagagt agtgctagtg       480
     atacacctgt atcaaggaaa agaaaagcca taagttttga agtgaaatta gacataataa       540
     agaaccagtg ccatcaacct ctaaagccct tgaaagtgcc cagaagtccc cttcagaatc       600
     tccacaaaag tctccatcta cctcctcatc ctcctctaat taaacctgct tttcctcaag       660
     caccagcatt caagataaat aaaaaactat ttcttattca attttattgt ttttctgttt       720
     tgtttaatta ctagtattgc aacagtattg ttttctactt ttttcattgc aaatgtacag       780
     tatttcagct acattatggg ttaaataggc ttttgtgggc tagcctggga acctaaccac       840
     catttataac attgtttcta tgggaaaatg tattctgagt tccaaacaac tgacttacaa       900
     atgaactttt ggaacacaac ccatttgtaa gttggggact gcctg                       945
//
ID   MARE1       repbase;    DNA;    SYN; 957 BP.
XX
AC   .
XX
DT   26-JUN-2006 (Rel. 11.06, Created)
DT   09-MAY-2008 (Rel. 11.06, Last updated, Version 5)
XX
DE   Mammalian-wide repeat - consensus.
XX
KW   Mariner/Tc1; DNA transposon; Transposable Element; MARE2; MARE1.
XX
OS   Mammalian expression vector pCMV-Script
OC   other sequences; artificial sequences; vectors.
XX
RN   [1]
RP   1-957
RA   Jurka J.;
RT   "MARE1: An ancient mammalian repetitive element.";
RL   Repbase Reports 6(6), 344-344 (2006).
XX
RN   [2]
RP   1-957
RA   Gentles AJ., Wakefield MJ., Kohany O., Gu W., Batzer MA.,
RA   Pollock DD. and Jurka J.;
RT   "Evolutionary dynamics of transposable elements in the
RT   short-tailed opossum Monodelphis domestica.";
RL   Genome Res 17(7), 992-1004 (2007).
XX
RN   [3]
RP   1-957
RA   Jurka J., Kapitonov V.V., Kohany O. and Jurka MV.;
RT   "Repetitive sequences in complex genomes: structure and
RT   evolution.";
RL   Annu Rev Genomics Hum Genet 8, 241-259 (2007).
XX
RN   [4]
RP   1-957
RA   Smit A.F.A.;
RT   "MamRep1161 - consensus.";
RL   Direct Submission to Repbase Update (09-MAY-2008).
XX
DR   [4] (Consensus)
XX
CC   This element is shared by all mammals including marsupials. It
CC   cannot be classified at this point. Its presence in two mosaic
CC   forms MARE1 and MARE2 is characteristic for  SINE elements.  Also
CC   MARE2 contains microsatellite-like repeats in its 3' end,
CC   characteristic for some SINE elements. MARE1 contains a  5'
CC   stem-loop like structure at positions 16-55. It is different from
CC   all currently known mammalian repeats and it is detectable in
CC   variable number of copies ranging from hundreds to as many as
CC   3000 copies per mammalian genome.  MAREs may be useful markers
CC   for mammalian phylogenetic studies.
CC   Classified as Mariner by Arian Smit.
XX
SQ   Sequence 957 BP; 275 A; 142 C; 288 G; 244 T; 8 other;
     caggcagtcc ccaacttaca aatgggttgt gttccaaaag ttcatttgta agtcagttgt        60
     ttggaactca gaatacattt tcccatagaa acaatgttat aaatggtggt taggttccca       120
     ggctagccca caaaagccta tttaacccat aatgtagctg aaatactgta catttgcaat       180
     gaaaaanagt agaaaacaat actgttgcaa tactagtaat taaacaaaac agaaaaacaa       240
     taaaattgaa taagaaatag ttttttattt atcttgaatg ctggtgcttg aggaaaagca       300
     ggtttaatta gaggaggatg aggaggtaga tggagacttt tgtggagatt ctgaagggga       360
     cttctgggca ctttcaaggg ctttagaggt tgatggcact ggttctttat tatgtctaat       420
     ttcacttcaa aacttatggc ttttcttttc cttgatacag gtgtatcact agcactactc       480
     ttatgcttat cagccatgat tagggtcatt ttttggctca caaatggaat gaagaaaggg       540
     agagggagga aggaaggaga aagattttcc tgaggtaact gggcaagagt tggaagagag       600
     agaggaggga ggaanggaat taaagaggat gtgtgtgtac atgtgagaaa gagattgcct       660
     gaggtggaat taactgagct gtgaatggtg aaagagaagg gagaanggan gggcacagcg       720
     tgtgcatggn tccccttgag gggaagaaag gaggtggtgg ggaagagacg ttgggtcaga       780
     cagttccccg cgctggccac caggtggcgc catcggccca ggacagcttg gttgctgtcc       840
     ggagtgggcg ggaggngcag ggtnggggtg ggtgaggggg catcaggcga tgtgcaaccg       900
     gcgttcgtat gtacgggacg ttcgcaagtc gggtgtttgt aacttgggga ntgcctg          957
//