ID LINE_LS repbase; DNA; MCOT; 4465 BP. XX AC Z17425; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Lilium speciosum for two putative cds's. XX KW Non-LTR Retrotransposon; Transposable Element; LINE_LS; LSLINE; KW cys motif; reverse transcriptase; tandem repeat. XX OS Lilium speciosum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Liliales; Liliaceae; OC Lilium. XX RN [1] RP 1-4465 RA Leeton R.P. and Smyth R.D.; RT "An abundant LINE-like element amplified in the genome of Lilium RT speciosum."; RL Mol. Gen. Genet 237(1-2), 97-9104 (1993). XX RN [2] RP 1-4465 RA Smyth R.D.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (28-OCT-1992). Smyth D. RL R., Monash University, Dept of Genetics & Developmental Biology, RL Clayton, Victoria, Australia, 3168. XX DR GenBank; Z17425; Positions 1 4465. XX SQ Sequence 4465 BP; 735 A; 1181 C; 1360 G; 1189 T; 0 other; acgccataag gaggcaggga actggttctg atgtggattt acaggagcca gaaaagcaaa 60 aaccccgata atcttcatct agtttggcga cgaggagaag attaccggga tccctcgatt 120 cttttcttgg gtgttcgtcg gggccccgaa actgggcttc acttctcttg gggttgttcg 180 gggtgacggt tcggtgaccc taccgatttc gaggtctggg ggggccgccg aggatgggac 240 acagtctctt tcggggccgc gatctatctc tctactggct caggaacgcc ttttcggttt 300 tcttccagca tttggggcgg gcactgttac tgattcgtcg gaactctctc cactagggtg 360 cccggggggg cggtgttcgt agggggacac ggccgggcgc ggtaaacctg cacttctttc 420 ccatgtcgta catctcttgg aatatccggg gtctgggttc tctggggaga cggggggtga 480 tccgacacct tattgctgaa caacaaccca atcttaattt gtacttcagg agacgtagat 540 ggctgtcccc cctggtttgg gtcctggacc acttggggac gaccagattc gcatgtggta 600 gggtctcgat tcggttggtc aatcgggggg cattctggtg gggtggcacc caatgcctta 660 actgtcgtcg agagggtcac gggtcgaggc gctgtccatg tggttcttcg cgattctggg 720 gggttctgag ccttttttcg ggggtctact ctccctgcgt catcgcttcc aaggcctctt 780 ctgggccgat ttggttcgaa tccggggctc tatccggaac taccttagat ctaagggggg 840 gacttcaact ccaccctttc tccagatgag cgggtggggg gctcagggag ctccgtgacc 900 tgagggcttt tggggatttc gtgtccgatt gttctctgtt cgacatccca ctgtcgggtg 960 ggcggttcac ctggaccaat gggcatcact ttgctcagtt ggaccgcttc ctcgcttctg 1020 acacgtggct catttctcat ccaaactcct gtctccgggt aatgacggcc acagtttctg 1080 accactgccc gatcatcctt atggctcccc ctcgcccgac cccaataatc cgtttcgagg 1140 ctgtctggat cggagaggag ggttttgggg agggtctcgc tagggcctgg cgacgcgatc 1200 attgatctct ccgggcggcc ctcaaccttt cctcaaaggt tcgggcttta cgggtattct 1260 gccggcgatg gaggggacaa ctgggacggc aacggcggta caccgatcac ttgatttcct 1320 tgatcgaacc tttggaggtc cagcgggaag gggggactct accacccggg ggacattcga 1380 actggggctt cttgcattcg gtcctggacg aagaacacca tcgtgaggag atttactggc 1440 gccagaggtg ccggttgctg gatggaggag ggggtccgta acacctcatt cttccatcgg 1500 gtcaatgcca tcgccaatag aactccatcc accgtctggt ctgcattgat gtcatccata 1560 ctgacccggc ctctatcttg ggggtgggcg acccaatatt ttcggacggc cctgtctccg 1620 tcgaacgccg actcttcggt gtgcttggga agatctggac ctgtgcgtcc ttggccatcg 1680 agcatggatg accccttcac ccttgaggag gttcgggcgc ccgtatttgg gtatgcagcg 1740 tgtggatcaa cgggtccaga cggtattcct ttcctttcta tcagccgttt ttggagcctg 1800 gtcggtgtcg acctgttggc acacctgcat gacttctatc gagggggacg actggacccg 1860 attaaccatt cctacttgac attcatcccc aagcctggcc gaggcaagcg cgttgaggat 1920 ttccggccga tcactttggc gaatgcttct tataagatcg tgatcgaggt attggccaac 1980 cgtcttcgag gggtcatcgg ttaatctgat ccacgattcc caatctgcct ttgtccccgg 2040 tcgctcgatt ctggactccg ttgctttggc cgaggagcta ttcgccatgt tcgggaggag 2100 aagatggcta tcaagattga tttcaggtgg gcctttgaat ccctcaactg gaattttctc 2160 atcgagtgcc tccgtgtcaa gggcttcaac gatcggtgga ttgggtgggt gcgatcatgt 2220 ttgggctctt ctcgggccac tgttctggtt acaggccaac cgaggcatta cttccgggtt 2280 cgaagggggg tgaaacagag gtgcccccta tccccccttc tcttcatttt ggcggccggc 2340 gtcttgggag cactgatccg gggggcatcg gcgcggggct cctttccgtg gtcgagtggg 2400 ggggggtttg tttggttggt cagtgggttc caattcgctg acgataccct tatcttctcg 2460 gaccatccgc aggaagccga gaatttactg tcctcctgtc ttgttttggc ggcttctgtc 2520 ctcgagctca actgtgcgaa gacgcaaact cttctacttg ggactatcga ggaaagggcg 2580 gcggatttgg catcacttcg gtgctcccgg ggtactctcc ctatgaccta tcttggcatc 2640 tcacaatctg accggccgct cccaaggaac tgctgggacg gtctgattcg tcaagtacag 2700 gatcgactgg ccgttggcag aaccggtcac tttccggggg gcccgtctta ctctcatcaa 2760 tgcggtgctg gctcagatct ctaccttcct attctcttac cattggagac ccgaatggta 2820 ctacgacatc tagatgggct gcggagaagt ttcttctggc gaggaaggga gggctatccg 2880 ggtctggttc tggcaggctg ggagggtatc tgtcgtcggg tgggaggagg ggggactcgg 2940 tgtcacgaat ctccgtgatt tcaacagggc attgttggcc aagtggctgt ggatactggt 3000 ctccgtccgg gtgtttgtgg tcggtggtgg tgagggaacg tttactttga gaggcatcct 3060 ttatcgggcc tcaccggtcg taccttgggg tctatctctg ccctttggag gggtgtcact 3120 agggtgatag ctcccttcag gcctgcatct cctattatgt gggtgcgggg acggtggtct 3180 ttctgggaag atactggctg gggcctaccc atctcggggt cgattcaaca cctttacggt 3240 gtccaccagg gtaccgggga cggacggctt ctctttattt gggagcacgg ggctggtctt 3300 tttcgacgtt ccggacaact gggggggagg cgctcgcaca actgcgctct ctcctttctt 3360 tgcttgctgg tacgtccccc atatcggggg agagggacgt acctcacttg cgtttggagg 3420 ggaacggtat tttttctgtc cggtctttct actcctttct tcatacgggg gggcttctgt 3480 cccttgggcc gacaccctat ggtcggttcg ggcacctgcg aaggtcttgg tgtttggatg 3540 gtcggttcgg gcacctgcga aggtcttggt gtttggtcgg tcggttcggg cacctgcgga 3600 gaccacacgg gccattctac cgcacggatc catatgcgtt atcatcgccg gttggggcgg 3660 ggtatctggg gaccaaacat cctgtccttc caccccggtc tgggtcgggg ctctcctctc 3720 ggactccacg gggaccctca tatgtctccc gtatcttcct tcggcctcct ttggggagat 3780 ctgcttagga ctctcctatc atgtggcggg tccctaggcg atcgggggtc ccatcgttgc 3840 gactgcccgg gaacatcctc tccaatttta tctctcttgt gcctctgccc acccctcccc 3900 gatgatcagg tccctgcgag gggatcaggg ggccgctggg atcccccctg gtacggccgg 3960 tctgtcccaa tgcggcctat gtggggggca cgacgagcgg ccaaccatct gttcttctcc 4020 tgtccggtct ctagggccta tggacttcct tctgttcacc tctcggggtc cgggggcgac 4080 cggtttccat tgttaggttt ggacatcttg gagggactca tcagtggcgg ggggtttgcg 4140 gcgcgcttgg gacatggtgt cctatgcatt tgttggtgcc tatgggggga gaggaacgaa 4200 cgggtctttc ggggcacatt cagggacatt gttcaactga gggatcactg ttgctttcat 4260 ctccgtgagt gggtgcagtg tcttggtgag aaggatcgga ctgtgctgcc gactcccttg 4320 tgatatttct tgtaaatact gatgtgacgt tttttttttt tgaatgtaac agcatctttt 4380 aataaatata actggtccgg gtcactgccc aacccgcccc accctctcgg gtcggggatc 4440 atcaaaaaaa aaaaaaaaaa aaaga 4465 // ID IRRE_IB repbase; DNA; MCOT; 3412 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 22-SEP-2007 (Rel. 12.1, Last updated, Version 2) XX DE Iris brevicaulis IRRE LTR retrotransposon, partial consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; gag-pol domain; KW IRRE_IB. XX NM IRRE_IB. XX OS Iris brevicaulis OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; Iridaceae; OC Iris. XX RN [1] RA Kentner K.E., Arnold L.M. and Wessler R.S.; RT "Characterization of high-copy-number retrotransposons from the RT large genomes of the louisiana iris species and their use as RT molecular markers."; RL Genetics 164(2), 685-697 (2003). XX RN [2] RP 1-3412 RA Gentles A. and Jurka J.; RT "Consensus of partial sequence of IRRE retrotransposon."; RL Direct Submission to Repbase Update (30-SEP-2004). XX DR [2] (Consensus) XX SQ Sequence 3412 BP; 952 A; 730 C; 898 G; 832 T; 0 other; cggtactggg gcgtgacaag gttttagtgg tggcccatgc aggtctgttt ttcagacttg 60 tagggtactt ggttatagga agtctcaatc atacatgttc tctttgactc ctgattcgtt 120 ctcttcgatc ccagcttgac cctccatcga ttgatcttgt tgattctttc ttgtccggta 180 tttgattgtt tttgtcctct cttaggatct cttccccagc cctggacagc gaacatgaga 240 gacaaggtag aacagggccc tatggcccca gcaaggagag cacccctcag gacagtcagg 300 gttgagcgtc gttgagcaca gccaggatca gtgcctcctg ttgttccgac cgcagccttg 360 atacccagat tactagagat tatccgggga tgttagcaag tcagcagttc agcagcaaca 420 gtccagcaac aggaacaaaa tgttctgttg aatcagggat tacaagtggc tttggagaga 480 agtggaagaa ctgattcggt gcgtcgggta gattctgtcg acgtaaccca ggtactttat 540 ggcacggagg acgccatcac gcagatgctt ggcttcaaga cattgaggct atttggcagc 600 agctaggttc cggaggagga acaagttgat caagtcagat tacagcttca agacttgctc 660 gcgactggtg ggcatcagaa gagatgggct tgaacgtcct atctcttggg atatttcagg 720 gccagtttaa ggccaagtac tttggagtcg tggcgcagta tgagctgcag cagaagttta 780 ttggtctgaa acaagctggc cagacagtag acggctatgc agcagagttc tgcagactga 840 gcaggtttgc tccacaatgg tagctactga gccagaacgg gcatgaggtt ccagcaagga 900 cttcacctag agattctaca gttggtagaa gggcataact atcagacctt tgacgagtct 960 aacagcggct aagagacatg agcttaccat tcaacgattg gcttcgagac aggaggccaa 1020 agaggtccca tgcacaagtg gtggagggat ggcaccccga acaacagcac cagcacccgg 1080 catccgtatt catgacgggc acccagaagg ccagcagtag cagcccagtc aggcaacaac 1140 agccaagaac acaacaacag agagcaccaa taggttgcac cttctgtggc aagggaggtc 1200 acaccagaga tgtgtgtaga gcagcaaaca gacttgcctg agatgtggca gtgcagacca 1260 catgattgta tcatgcccag aatgcagagg ctaggagggc cagtacagca gttcagcatt 1320 gcagcacctg aaccagcaca acaaggaggc cagagtggca gcacgccctt gcccagcgtc 1380 cttaccgacc aagcccagat gtttcgacag agcagcgaca atggcacaac aaggcccagc 1440 aacagatcag agaagacagc agcaaggagc cagcagggtc agggacaagc attcaatctg 1500 tccttggaag aggccctggc atcaggtgaa gtagtggcag gtaatattct cgttgcatct 1560 tttcctgctg tagcattatt tgattcggga gcttcccatt ctttatatct acacactttg 1620 cgacacgaat tggttgaaat ttgaggcatt gccagagagg ctgaatatac tcactggcaa 1680 tggactcgta ggagttaata aggttgtata gcatgcccaa ttctagtgtg tggacactta 1740 ttcctgcaaa ttaatagagt tccctatggg taattttgac attatcttgg gcatggactg 1800 gttgagagat agtcatgcta cgataaactg tcatgagggt agagtagtct tcaaatttcg 1860 ggcaccaagg agttcaccat tgcagagcat cagatgatca gcaagaaggt atgatgcaac 1920 aaccagtgaa gaagacagtt ccccagaatc attgaagaat tccttgatgt cttccctgaa 1980 gagcttcctg gattaccacc agtgagagac gtggagttct gcatagagtt actaccggga 2040 caaaccaatc tctgagcgag tttatcagat gtcaccatca gaattggata agctgtacca 2100 catgtagagg agttgaaggc gaagaagttc ttcgacccag ttggtcacct ggggagcacc 2160 agtagtgttg gtgaacaaaa agatggatct cgcggatgtg cattgactac aggcagctaa 2220 tgcggtgaca gtaagaataa gtacccactg ccaagaatcg acgacctatt cgatcagttg 2280 agtagagcaa gttttctcca agattgacct tcgatccgga tatcatcaag tcaggttcgg 2340 gagcaagaca taccaaagac gacttttagg tcacgatacg ggcattacga attcttagtt 2400 atgccgttcg gacttactaa cgcgcctgcg gtatttatgg acttgatgaa ccgatcttca 2460 tgccgtactt ggatcaattc gtggtagttt cttgatgaca ttctagttac tcgcaatgag 2520 gaggaacatg aagagcatct agaaatgttc tacagattct gagagaaaat cagttgtatg 2580 ccaagttgga caaatgtgag ttttggttgg accgcatttt atttctggga catattatct 2640 ctggagcagg agtaacagta gatccgaaga aggttgggcc gtgaaggttg gccaattcca 2700 agaacagtgg cagatgtgcg cagttttctg ggactagcag gatactaccg aagatttgtg 2760 gcagattttg caaggatctc agcaccactg actcgtctaa cacgcaagga agttaagttt 2820 gcttggtcgc agaatgtcag acatcttttg aagagctgaa aagaagttaa tttctgcccc 2880 tattcttaca ttaccaactg gatcggagga tttacgtata tgtgatgcgt ccggaaaggg 2940 actcggatgt gttttgatgc agcatggaaa ataatagcat atgcttctcg gcaactacgg 3000 aaccacgaga agaattaccc aactcatgat ctggagttgg cagcggtgta tttgcactca 3060 agttatggag gcattacctg tatggtgatc gagtgagata tacaccgatc acaagagtga 3120 agtattttca ccagaggact aaacatgagg cagcggaggt ggttagagtg attaagactc 3180 aacatgaatc tccagtatca cccgggaagc aagtagtagc tgatgcctta gtaggagagg 3240 cagagctata tgttaacctt aagcactccg agattacaga gatgggataa gtttcccgag 3300 ttgcagttac attcatccac tatagaagat aagacccatc agaagcttcg gcagaatgtg 3360 atcgctcaat tcagagatga cctagtttgg aatcgtttgg tccaagtgga aa 3412 // ID RT_AP repbase; DNA; MCOT; 257 BP. XX AC AJ223550; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Alstroemeria pelegrina Ty1/copia-type retrotransposon RT_AP, DE reverse transcriptase. XX KW Copia; LTR Retrotransposon; Transposable Element; RT_AP; KW retrotransposon; Ty1/COPIA superfamily; reverse transcriptase. XX OS Alstroemeria pelegrina OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Liliales; OC Alstroemeriaceae; Alstroemeria. XX RN [1] RP 1-257 RA Kuipers G.A., Heslop-Harrison S.J. and Jacobsen E.; RT "Characterization and physical localization of Ty1-copia-like RT retrotransposons in four Alstroemeria species."; RL Genome 41(3), 357-367 (1998). XX DR Genbank; AJ223550; Positions 1 257. XX SQ Sequence 257 BP; 46 A; 71 C; 57 G; 82 T; 1 other; acggcgttct ttcatggttc gctttcagag acaatctaca tccatgcacc ttcaggtctt 60 tctgtttccc ctggccagtg tctcagtctc agaaaggcca tttacggcct caagcaagct 120 ccgcgcgcat ggtttgagtg ctttcggact gcagttctag ctgccgactt cactngaagt 180 gttgaggact ttgctctgtt tactcatcgt acaacccggg gcctcattat tttgctcctc 240 tacgttgatg acatgtt 257 // ID ENSPM_AC repbase; DNA; MCOT; 1910 BP. XX AC AJ223064; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Spm/En-like DNA transposon. XX KW EnSpm; DNA transposon; Transposable Element; ENSPM_AC. XX OS Allium cepa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; OC Amaryllidaceae; Allioideae; Allieae; Allium. XX RN [1] RP 1-1910 RA Pich H.U. and Schubert I.; RT "Telomeric heterochromatin and alternative telomeric sequences in RT Allium cepa."; RL Unpublished. XX RN [2] RP 1-1910 RA Pich H.U.; RT "ENSPM_AC."; RL Direct Submission to Genbank (23-DEC-1997)Pich U.H., RL Cytogenetics, IPK, Corrensstr.3,. XX DR GenBank; AJ223064; Positions 1 1910. XX SQ Sequence 1910 BP; 645 A; 301 C; 384 G; 580 T; 0 other; gtgacgaaaa aacgaagggg tcgatactga aggctcaaca agtgaacatt taataatggt 60 gttagcgtat ttatggattt tgctttacgt aataatggaa actacaaaga aatccgttgt 120 ccatgtagta aatgcaaact gttaaagcat ttgataccac aaatggttag agttcatttg 180 cgtcagtacg gttcgtgtga actatttgat ttaggatcgt catgggaaca gttagcatct 240 aatcctgtac aagataagga ggtggtgagt aatgaaattg gtacgacaaa tcttgtagaa 300 catatggttg aagatgctca cgttcaatat ttcctgttcc tcaattaact gatgacgatg 360 gtaatgctga agaagaaaca aatattgggg aaaaaaacat atatgatttg ttagatacca 420 cgaaaaaacc ctttgggaag gctgcacaag aggaatccaa ttatcagtaa ctgctgaata 480 cattgcgatg aaatccaaat acaacctcat agaatatgga tttacggctg ttgtacaagc 540 tgcgaaacga catatgcctc ctcataatct aatgtgcgaa aatcattacg aagtaaaaaa 600 aactaatgtc agctttcagt ttactgtatc aaaaaataga tacatgtcta aagggttgcg 660 tgttgttttg gaaagaagaa tatcaacctt agaaattata aaaatatgta atcaggaaag 720 atacaaacca agaaagaaaa aaggaaagga agtcccgtat aagcgtatgc attatttacc 780 aattactcct agatttcaaa ggttatatgc atcttccgta actgcgcaac atatgagatg 840 gcacgatgtt agaacacggg aagaaggtac gttaacacat tcagctgatg gggaagcatg 900 gaagtatttt gactacaaat atcctgattt tgcgtccgaa attcgtaatg ttagacttgg 960 tttttgtgcg gatgggtttt ctccattctc tcaatttggt tcgaaatact cttcctggcc 1020 tataattgtc actccttata atttacctcc ttggatgtgt acgaaaactc catatatgtt 1080 tcttacagtt ttcgtccctg gtcccgatga tcccactagt tctagaaaaa tgaactttcg 1140 catgtatgct tctttattgt ggacaatcag ccattttcct gcatatgcaa tgctttcagg 1200 ttggagtatg gccggtcgtc tagcttgtcc ttattgcatg gaagaaacac gagcaatttt 1260 tttacctcat ggaaagaaag attcgtggtt tgatcttgca tcggcgtttt cttcatatta 1320 atcatccttt agaagagata aaaaaaactt tacagcttaa tagatatgaa actttgagac 1380 cactacggtt tggtcaagtg aagtaattta tgaacttgta aaggattatc caaagataca 1440 tgaaaccgga gaacaaattg aaattcaagg taaatcatcg attcataact ggtgcaaaca 1500 gagcatattt tgggaattgc cttattggaa aaatctcttg attcgtcata atattgacat 1560 gatgcataat gagaaaaacg tgtttgataa tctgtttaat acaattttga atgttaaagg 1620 gaagagaaag atgatttgaa atcaagacgt gatatcgaag taatatgtaa tcgtcctgag 1680 cttcgtataa aaccaaatga cagaaaaaag ccaaaagctt gctatgagct agacaataat 1740 caagttaaat tacttttaaa atgggtggaa ggattaagat tcccagatgg catatcttct 1800 aatctttgta gatgtgtcga ctataagagc aataaactta gcgggatgaa aagtcatgat 1860 tgtcatgtta tgatggaaaa tttgttaccc ttcgtttttt cgtcacgtgg 1910 // ID BREP1 repbase; DNA; MCOT; 507 BP. XX AC . XX DT 14-DEC-1998 (Rel. 3.11, Created) DT 14-DEC-1998 (Rel. 3.11, Last updated, Version 1) XX DE Repetitive element BREP1 (a consensus). XX KW BREP1; MAINTREPS; intermediate repetitive sequence; KW Repeat region. XX OS Musa acuminata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa; Eumusa. XX RN [1] RA Baurens C.F., Noyer L.J., Lanaud C. and Lagoda J.P.; RT "Use of competitive PCR to assay copy number of repetitive RT elements in banana."; RL Mol. Gen. Genet 253(1-2), 57-64 (1996). XX RN [2] RA Lagoda J.P.; RT "BREP1."; RL Direct Submission to Repbase Update (18-SEP-1995)P.J.L. Lagoda, RL CIRAD-GERDAT, BIOTROP lab. AGETROP, 2477, avenue du val de RL Montferrand, F-34032 Montpellier CEDEX, FRANCE. XX RN [3] RP 1-507 RA Ma J. and Jurka J.; RT "BREP1."; RL Direct Submission to Repbase Update (DEC-1998). XX DR [3] (Consensus) XX SQ Sequence 507 BP; 142 A; 92 C; 89 G; 180 T; 4 other; gaattcgggc aggaactatt ttgtttgaaa attagactct tatatcttcc tgttgacact 60 gattttgtag attttggaca ccgaatactt acccaaacat ctgattcaat tgagcctata 120 gacgctgtaa aacagggttc aagatttctg acctttcgat actaaaacgc ctataactcc 180 ctgttgaaaa ttctgawttg taccaaactg attttatttg aaactagact tgaaaatcty 240 tcttttgaca tatagtttga aaattttgga kttcaattgc ccaccctatc gtctgttgaa 300 tccgacccta taaattctgc aaancagtga ttgtgatttt gaccttgtgt taccaaatca 360 gaggtaactc tgtgttggga gccctgtttc atatgaaatc tgttccatcc gaatatagat 420 tgatatatgg ttcgaccata gccttcttat gggtattgga gcataattgt tattctgaaa 480 tatttgtttg atgtgccact ggaattc 507 // ID DEA1 repbase; DNA; MCOT; 2614 BP. XX AC Y12432; XX DT 01-SEP-2005 (Rel. 10.08, Created) DT 01-SEP-2005 (Rel. 10.08, Last updated, Version 1) XX DE A.comosus DNA for Ty3/gypsy LTR retrotransposon DEA1 (partial DE sequence). XX KW Gypsy; LTR Retrotransposon; Transposable Element; HHCC; integrase; KW polyprotein; reverse transcriptase; RNase H; DEA1. XX OS Ananas comosus OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Bromeliaceae; OC Ananas. XX RN [1] RP 1-2614 RA Thomson K.G., Thomas J.E. and Dietzgen R.G.; RT "Retrotransposon-like sequences integrated into the genome of RT pineapple, Ananas comosus."; RL Plant Mol. Biol 38(3), 461-465 (1998). XX DR Genbank; Y12432; Positions 1 2614. XX FH Key Location/Qualifiers FT CDS 1..2613 FT /product="DEA1_1p" FT /translation="LDREIEFVIDLVPGTTPISKAPYRMAPAELRELRAQL FT QDLLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVTIKNKYPLP FT RIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVM FT PFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIV FT LQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRL FT TSVTEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQ FT ELKQRLTTAPILTLPVAGAGYVVYSDASLNGLGCVLMQDDKVIAYASRQLK FT EYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQKELN FT LRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIE FT QMKRLELEIVTPDTPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDG FT CTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPYAIHPGGTKMYK FT DLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEK FT ITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDE FT IVRLHGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSER FT TIQTLEDMLRACVIDFQGGWSQHLPMAEFAYNNSYQASIKMAPFEALYGRK FT CRSPLHWSEVGESLALGPDVLQEAEVKVRIARERLLTAQSRQRSYADRRRR FT DLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGPYEILERVGPVAYRLA FT LPPNLSGVHNVFHVSVVR" XX SQ Sequence 2614 BP; 651 A; 543 C; 762 G; 658 T; 0 other; ctggatagag agattgagtt tgtgattgat ctcgttcccg ggactacccc aatctcaaag 60 gcaccctata ggatggcacc ggcagagctg agggagctga gggcacagtt gcaggatctg 120 ttggacaaag gcttcattcg accgagtgtt tcgccttggg gagcaccagt tttgttcgtc 180 aagaagaaag acggatcact tcgcctttgt gtggattatc gtgaacttaa taaggtcacg 240 atcaagaaca agtatccgtt gccgaggatc gatgacctgt ttgatcagct tcagggatca 300 tgtgtgtatt ccaagataga cttgcagtcg ggataccacc agttgaagat caaacccgag 360 gacgtatcaa agacagcttt tagaacgcgg tatggacatt atgagttcgc agttatgccg 420 tttgggctta ctaatgcccc gacagctttt atggatctga tgaaccgtgt ttttaagcct 480 tatctagaca ggttcgtcgt ggtgttcatc gacgacattt tggtctactc tcggagtgat 540 gcggatcacg aggaacactt gaggattgta ctccaagtac ttcgggaaaa ggagctttat 600 gtcaagttga agaaatgtga attttggctt cgagaggtag ccttccttgg acacttgatt 660 tcaggatcag gtatagcagt ggatcccaaa aagattgaag caatcaagga ttggccgaga 720 ctgacgagcg tcacggagat acggagcttc cttggattgg ccggttacta ccggagattt 780 gtagagaggt ttgctaagct atctactccc ctcacgaggc tcacgcataa aggtgttaag 840 ttcatttgga atgacgcgtg cgagcgaagc ttccaagagt tgaagcaacg attgactacc 900 gccccgatct tgaccctacc agtagctgga gccgggtatg tggtttatag tgatgcttca 960 cttaatggtt tgggctgtgt attgatgcag gatgacaagg tgatcgcgta tgcttctcgc 1020 caactaaagg aatatgagaa gaactacccg acgcatgatt tggagttggc ggccgtagtg 1080 ttcgcattga agctatggcg ccactacctt tatggcgaac ggtgtgaagt atacacggat 1140 cacaagagct taaagtacct gtttactcag aaggagttga acctgagaca gcgcagatgg 1200 ttggagctgc tcaaggatta tgatctgacg attctttacc acccgggcaa ggctaacgtg 1260 gtggcagatg cgctaagtag gaaatcgatg gaaaacttgg cgatgcatgt tgtgactcaa 1320 ccgcggttga tcgagcagat gaagcggttg gagttggaga tagtgactcc tgacacgcct 1380 atgaggttga tgacattggt agtgcagcct accttgttgg acaggattaa agaaaagcaa 1440 gcttctgatg tggagttgca aaagattaaa gggaaaatgg ttgatggttg caccggtgac 1500 ttcaccttag acggtgatgg attgatgcgt ttccgcggac ggatttgtgt accggcggat 1560 tcggggatta aagaggatat tcttcaagag gcgcaccggg cgccctatgc tatacatccg 1620 ggaggcacca aaatgtacaa ggacttaaag ttgctctatt ggtggcctgg gataaaaaag 1680 gatgttggcg agtttgtagc taaatgctta acttgccaac aagtgaaggc agagcaccga 1740 gttcccgcgg ggaagcttca gagtttgcct attccagtgt ggaagtggga gaagatcact 1800 atggactttg tgacaggatt gccacgctcg caggcggggc atgacgctat ttgggtgatc 1860 gtggataggc tgacgaagtc ggcgcacttc atacctattc atacgacttg gaccggagag 1920 aggctcgcac aagtgtacct tgatgagatt gtgcgacttc atggagtgcc tacatcgatt 1980 gtatctgatc gcgacacgcg cttcgtgtct cacttttgga ggagcctaca ggacgcctta 2040 ggcacccggc tggatttcag tacagcattc cacccgcaga gtgatggaca gtcggagcgc 2100 actattcaga ccttagagga tatgcttcgg gcatgtgtga tagacttcca ggggggatgg 2160 tcgcagcatc tacctatggc ggagtttgct tataacaaca gttatcaagc aagcatcaag 2220 atggcgccct tcgaagcact ttatggacgg aagtgtagat cgccacttca ttggagtgaa 2280 gtcggcgaga gtttggctct aggccctgat gtgctccagg aagctgaggt taaggttcga 2340 attgctcggg agcgactttt gacggcgcag agtagacaga ggagctacgc cgatcgacga 2400 cggcgggact tggagttcca agttggagac catgtgttct tgaaggtctc gccgactaga 2460 ggaatcaaga gattcgggat tcggggaaag ttgagccccc gtttcattgg accgtatgag 2520 atcttggagc gtgtaggtcc ggtagcgtat cgacttgctc taccaccgaa cctatcgggc 2580 gtacacaacg tcttccatgt atcggtcgtt cgga 2614 // ID Monkey_MA repbase; DNA; MCOT; 6369 BP. XX AC AF143332; XX DT 03-JUN-2005 (Rel. 10.05, Created) DT 03-JUN-2005 (Rel. 10.05, Last updated, Version 1) XX DE Musa sp. putative LTR retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Interspersed repeat; putative LTR retrotransposon; Monkey_MA. XX OS Musa acuminata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Zingiberales; Musaceae; OC Musa; Eumusa. XX RN [1] RP 1-6369 RA Balint-Kurti P.J., Clendennen S.K., Dolezelova M., Valarik M., RA Dolezel J., Beetham P.R. and May G.D.; RT "Identification and chromosomal localization of the monkey RT retrotransposon in Musa sp."; RL Mol Gen Genet 263(6), 908-915 (2000). XX DR Genbank; AF143332; Positions 1 6369. XX CC Similarity to reverse transcriptase, RNase and integrase genes of CC retroelements from plants, fungi and yeast; several stop codons CC are CC present in the major ORF of this element, suggesting that this CC element, if functional at all, is non-autonomous; present in CC multiple CC copies in the genome. XX SQ Sequence 6369 BP; 1703 A; 1520 C; 1606 G; 1540 T; 0 other; gtcgacacat gggaggactt gaagcgagag ttgagaactc agttcctacc agagaacaca 60 gagttcgtcg caagaaggaa gttgagacaa ctccaccaaa gtacctccat ccgagactat 120 gtgaaacaat tttctgcact aatgctggac atacaggaca tgtccgagaa ggacaagttg 180 ttcagcttcc ttgatggttt gaaaccatgg gctcaacagg agctaaatcg aaggaatgtt 240 accgaagtgg tcggggcaat agctgctgca gaaaggctca ctgattttgt ttcctctgaa 300 gacccaacaa gaaggaaaca atcttcaagc aatctccctc caaaacattc tcgagggaag 360 gagctcgggg gcaaacaaaa gaagaagagc tcccacaaag ggccgaaccc gaaaggcaag 420 gctgcaaaac ctggaggatg cttcttgtgc ggaggaccgc acatggtaag ggagtgccca 480 caaaaatagg cactcaatgc tttgacggct tccatccacc ctcctcaatc ggacaagggc 540 aaagctattg ctcttagttc gagcagttca gaatccagca gcgacgacga ggagtcacaa 600 ggaccccgaa tgggagcaat gcgtttgttg aacgctatgc agggtcaagt gggggagaat 660 atgaagacaa aggcacaaaa agcaggaagt agtgagctga tgtatgtgga catcaagcta 720 aatggccaaa cgatccgtgc aatggtagat acgggtgcta cccacaactt catagccgat 780 cgcgaagcac aacgacttgg gttgaccttg gagaagagcc caagccgaat gaaggcggtg 840 aactcggagg ccaggcgaat ctccgggttg gcgaagggtg ttcctatcaa aattgggact 900 tggggcggaa acaccaatat gatggccgtg ccactagatg acttccaagt gattcttgga 960 atggagttta tgcacgcagc gaagttggtg ccgatgccgt tcttgaactc cctatgtttg 1020 atgggaggcg atgacccctg cgtggttgcc gtctctcgga gaggaactaa ggagccccaa 1080 cacatttcgg cattacaatt gaagaaaggg atgcgaaaag gcgagttgac attcgtggct 1140 gctatgaagc tagagccact caacgaggtg gccattcaag aacctactgt ggtggcgaac 1200 gtcctaaaag agttcaaaga tgttatgcca cccgagttgc cgaagaacct tccaccacgc 1260 agaggcgtgg atcacagtat cgagctggag ccaagagtga agcctccagc gagaccaccc 1320 taccgcatgc ccccgccaga gttggcagaa ctcaggaagc agttaggtga actgctaagc 1380 ggtggtctca tccgcagctc taaagcacct ttcggagctc cagttctctt ccagaagaaa 1440 caagatggga gcctccgatt atgcgtcgac taccgagccc tcaacaaagt aacagtgaaa 1500 aacaagtatc ccatcccgct catcgcggac ttgttcgacc aattgggcaa agctaagtat 1560 ttctcaaaac tcgaccttcg gtcggggtat tggcaggtgt gcattgctga aggcgacgaa 1620 gcgaagatta cctgtgtgac caggtatgga gcgtttgagt tcttggtgat gccttttggc 1680 ttaaccaacg ctccggccac attctgtact ctcatgaacc agctattcaa ggagtatttg 1740 gataagttcg tggtcgtcta cctggatgat atcgtcgtct acagccaaac gctcgaggag 1800 cacgtgaagc acctttggat gattttcaag gttctcaggg agaacacttt gttcgtgaaa 1860 agggagaaat gctactttgc tcaaactgag atcttattct tagggcatcg aatcggtgat 1920 ggctccattt ggatggataa gtcgaaggtg caagtagttg cggaatggcg aactccaaag 1980 aaggtgccag agttaagatc cttccttggt ttcgtcaatt actatcgacg cttcatagcg 2040 ggatattcga agcgggcaac cccactgacg gagttgctga agaaggagca gacttggaag 2100 tggtcggaca aatgtgagat agcattccaa gatctgaagg ctgctgttct ggaagaaccg 2160 gtgctcaaat tgccgaatta tggagagccc tttgaagtcc atatagatgc ttcggacttc 2220 gctattgggg gagtactcat gcaggagggt catccggtgg cctatgagag ccgcaaactc 2280 aacgagaccg agcggcggta tccagtgcat gagaaggaga tgacagcagt gatccactgt 2340 ctacgagttt ggcgacacta cctcctcggg tcgcgatttg tgctgaggac agacaacatt 2400 gccctgagct atttccaaac tcagaagaag ctctccccaa agcaggcgcg atggtaggac 2460 ttcctggttg aattcgatat ggcaatggag tacaagcccg ggaaggcgaa cgtcgtggcc 2520 gatgcattaa gtcggaaggt ggaaagtgtg aatgtcgtac aactggaggg cagaggccaa 2580 gcaagttagt tgcactccaa ctttctttcc cgaatcaggg atgggctgta tagtgatccc 2640 caggcagtta tcctgatgca gctcatcaaa gaaggcaagg cacgacgatt ttgggtccag 2700 gagggacttg tttacacaaa agggaatagg gtttatgttc cccgagtaga caatttaagg 2760 cgtgagttct taaaagagtg tcacgattcc ctttgggctg gacacccagg cattcacaga 2820 acattggctc tcgtggagag ggccttctac tggccgaaaa tggggattaa tgtggaagaa 2880 tatgttcgaa catgccttac ttgccaataa gacaaggtag agcagcggaa gccagtggga 2940 cttttggagc cgttgcccgt accagaaagg ccgtgggaga gaatttcctt ggacttcata 3000 tcaagcttgc cacctgtagg gggactcgga tcgatactcg tggtggtcga tcggttttca 3060 aagtatgcaa ctttcattgc tgctccccta cactgttcag cagaagaggc ggccagacta 3120 atgatgaagg atgtagtgaa gtattgggga gtcccacaca atatcattag tgatcaagac 3180 gctcgattcc taggacgatt ctggaccgag ctgttctaat tgttggggtc aaagttatac 3240 ttctctacaa gcctccaccc ccagatggat ggctagactg aaagaataaa ttcgctcttg 3300 gagcaatatc ttcggcacta cgtgagtgcc aatcaacgaa attgggtgaa gctgttggac 3360 attgcccaat tctcctacaa cttgcagcgg agctctacat ccaacaagag ccccttcgag 3420 attatcacag gacaacaacc gtcgactccg cacaccatgg caattgggta tactgggagt 3480 agtccatcag cctatcattt cgcaaaggag tggcaccgaa atgccgatat tgcgcgggct 3540 tacttggaga aggcgacaaa aaggatgaag aagtaggcaa acttgggaag gcgaccgcaa 3600 gagttcaaag ttggcgattt ggtgttggta aagctctaat cagcatcact ccaattcttt 3660 agaaatagag tccacaaagg attggtgcgc aagtatgagg gacccttccc aattatcagc 3720 agggtaggca atgtctctta caagttgcag ctgccggcgt ggttcaaaat tcacaacgtc 3780 cttcacgcca gcaacctaaa agcctaccac tcggatctgc aagatgcttc ccgaagtgat 3840 ccaactcggc tacctcccat cacagcctcc tacgaaaagc gagtggaaac cattctggcg 3900 gatcgcaaga taaagctacc caacggagct gagcaaacag agtacttggt gaagtggcga 3960 aagcttctcc gaactgaagc cagttgggag cccgaagatg ccctgcgaca tgaagaagaa 4020 gtcatcaaca actaccaaca agcatcgacg agggcgtcga cagtttaagt gggggagaat 4080 gtcacgaacg gtcgtcgcgc acccgcaaca actccgttca acgaaccgtt cgtcgctcac 4140 acctgcatgt acaactgctt gacagcatgt tttctcttgg ttttgggtca ttttgcttgt 4200 aaatatgtaa gttcgaacaa actgcagcgt tccaaagcga ccgctcaccg aaccgagcaa 4260 aacagcccca aaacaaccca aaacagctcc gttttcgcgt gccacgggag gtgagcggag 4320 aactacgtcc gctcaccaaa atgtcagcca tctcagaccc caggaacccc ccgggtggca 4380 cagggctgga tggggcttcg gttatatacc gggtgttgag atctctttcg caagttcgca 4440 catgaccttt acgggaactt gtcttcgcac ccgggaccag gtgagcggct gtttgtgggc 4500 ttgcagctgt tcgttcatcc ttgaaagcct tgtttttctc cctctccctc ttttctcttg 4560 tgcacacaag gtgttcgtcg aattgcttgt aaagcttccc ctttcgcgag acttcgggac 4620 ttgtccgttg ctcgttcttt cgaactaact ctctttctct tttacaggtc cttcgggacc 4680 tgcgagaggt tacaaagtgg gctgatcctt gtggagcaag atcgcaaggg cgaagcacga 4740 cttaggcaat gcaagctaag ttcgcatctt tgccacaagg gtaactcgtg acttaggcaa 4800 cgcaagctaa gttcgcgtct ttggccgcaa gggtgcttca cgccttaggc aattccagct 4860 aaggtcgtga cagtacgact taggcaaaac cagctaagtc cgtgacacag tgtcagtttg 4920 actaacacta tcctaggcgg tagtattgcc caagtctggc aataccaccg cttgggggct 4980 agtgctgggc agtaccactg cccaaactag cggtaccacc gcttggcacc ctgctagggg 5040 cggtacaatc gcctagacta gcagtgcaac cgcatgacac agtatcgaag aatgtgccac 5100 aatggttaga cttttttggg cattgtttag gcttcttatt gggcccaaca cagctcttac 5160 atgagcctag ctggccccta attaggttgg cccaaatcaa atcctaatta cgtgctaact 5220 atgattttta agatatattc taagctaaac aaagttcgta agtctattct ttcggtgagc 5280 ttccggcgaa tcttccaacg atcttccgac gatctctcgg taatgttcta gcggactccc 5340 ggcaagctct tggagttcac gacaatcttc ttggtgagtt ccgatgagct tctctagcaa 5400 gctccgagac ttttcgacta gttcctctag aacttccgat gaacatccgg acttccgacg 5460 aactctcaaa ctcccaacgt gatctcgatc ttgactccgg gacttcattt tgcttcatgc 5520 cttgctatcg tagttaatcc tacatatgta aaatatactt cgatctagac aattaatact 5580 aagcaataat caagttgtcc ggcatgtcat tggtccctcg atgcttcgtc cgattcttcg 5640 gtgcatcgtc ctctcctacg ccctattgcc caatcgatta gttgactccg taactctgat 5700 atccttggca caatgtctgc tcttcttggc ccgatgcctg aatccatgtc ccgaagcctt 5760 ctgtcgatac gttgattgat ccaccagccc gacatccaat cttctgacat gttcctccgg 5820 cccaacatga ttttcctgct ttaattgtct catcctaatc gaagcatatt gcgtcactca 5880 aaacacagat taaatcataa acacatatca attggtttca tcatcaaaat acgaaattca 5940 acaaatcaga taaactagtg tgctatatac caatccatat gatgaaggca attggtctta 6000 tagttgctcg tgtagagaca caagggatac agtataggtg ctcatttgag aatgagttca 6060 ctgattgatc caatcatggg atgctgaata gttaatgata cctcgttgtc ctagtggtat 6120 acttggtctt tagatttgag acatcaagga tgtcatgtat gagtgctcca ctctttgata 6180 ccggatttat aggtttggat attccaaatc tagcacaatt ggtcatcggg agtggcaatt 6240 aaccttacga gggctattga gtatcgatag aggatcatcc actcttggtg tcatgagaga 6300 aatatctcat gtgttcttgc ttaaacaaat cattagctag ggttattcgg attgagagag 6360 aaagaattc 6369 // ID DREP_EG repbase; DNA; MCOT; 355 BP. XX AC . XX DT 01-AUG-2005 (Rel. 10.07, Created) DT 01-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE Dispersed repeat from African oil palm - consensus. XX KW Dispersed repeat; DREP_EG. XX OS Elaeis guineensis OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Arecaceae; Arecoideae; OC Cocoseae; Elaeidinae; Elaeis. XX RN [1] RP 1-355 RA Castilho A., Vershinin A. and Heslop-Harrison J.S.; RT "Repetitive DNA and the chromosomes in the genome of oil palm RT (Elaeis guineensis)."; RL Ann. Bot 85, 837-844 (2000). XX RN [2] RP 1-355 RA Gentles A. and Jurka J.; RT "Dispersed repeat from African oil palm."; RL Direct Submission to Repbase Update (01-AUG-2005). XX DR [2] (Consensus) XX SQ Sequence 355 BP; 99 A; 94 C; 63 G; 95 T; 4 other; ccaaggtttt gctaaattga aatacagcga ctcattcttc tccaactctt ggagtggtca 60 atcccatctc gatcacactc tgacttcrya agtacttgac tgtgcccaga agccttccat 120 ccctgaatta aaaattcagt tagtccagta ccaaagcaca gtgagttgct tgcaagtcac 180 tgaggcgatc tcaagtctaa gggacactta tacctatatc ccatcagaga cattctcgac 240 agcagaatac tctggagttg gtcacgttca atgatgatgt acccttacat ctcacctgta 300 tgccatacca gtrtctccac actcyttggt taagaggaca accaacccat atggg 355 // ID GISH1_AC repbase; DNA; MCOT; 416 BP. XX AC . XX DT 16-MAY-2005 (Rel. 10.05, Created) DT 03-JUN-2005 (Rel. 10.05, Last updated, Version 1) XX DE GISH1_AC, an interspersed repeat in A. cepa detected by genomic DE in situ hybridization - a consensus. XX KW GISH1_AC. XX OS Allium cepa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; OC Amaryllidaceae; Allioideae; Allieae; Allium. XX RN [1] RA Shibata F. and Hizume M.; RT "The identification and analysis of the sequences that allow the RT detection of Allium cepa chromosomes by GISH in the allodiploid RT A. wakegi."; RL Chromosoma 111(3), 184-191 (2002). XX RN [2] RP 1-416 RA Gentles A. and Jurka J.; RT "A. cepa interspersed repeat - consensus."; RL Direct Submission to Repbase Update (16-MAY-2005). XX DR [2] (Consensus) XX CC Detected by in situ hybridization. At least 20,000 copies in the CC genome; this is a consensus of several clones. The distribution CC of CC this repeat mirrors the distribution of both Ty1/Copia CC retrotransposons, and En/Spm elements in Allium cepa. XX SQ Sequence 416 BP; 118 A; 71 C; 80 G; 145 T; 2 other; caatgggaag ttccttggcc tgaccatttg ttggaaatcc aaagaaacaa tacgaccttg 60 tacggtttta gttgtakaac ctgccatgga atatggcggt aacccgctat tgaaatggta 120 gctatagtag gcatagtgcg aaatgtccta tgctggctaa gatttatatc tttactttcg 180 aaatgaattt tytctacact atgcactagt aataatatca aatgttcttt ttaatgcgta 240 tcaagcatct ttgactatca taaggagaaa tctcctccga ttctgcgttt gcattgtgtg 300 tgtgtgcggg aggccttatg gtagtctcat ttttaaaagc attgcgaatt gactttaaaa 360 atattcctct attttgtttt taaagataaa taaactgttt tgagttctca caccag 416 // ID ACSAT repbase; DNA; MCOT; 383 BP. XX AC X02574; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Allium cepa satellite DNA repeat (clone 8009). XX KW SAT; Satellite; Simple Repeat; ACSAT; satellite DNA; KW tandem repeat. XX OS Allium cepa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; OC Amaryllidaceae; Allioideae; Allieae; Allium. XX RN [1] RP 1-383 RA Barnes R.S., James M.A. and Jamieson G.; RT "The Organization,nucleotide sequence,and chromosomal RT distribution of a satellite DNA from Allium cepa."; RL Chromosoma 92, 185-192 (1985). XX DR GenBank; X02574; Positions 1 383. XX SQ Sequence 383 BP; 117 A; 81 C; 93 G; 92 T; 0 other; ttttacagaa aaaatccacg tgacgaaaaa acgaagggta aaaaactttc acgacccgat 60 tgaggttgga taggcttttt tgggtatgaa cgtgactagt gactgctgaa agctttcatt 120 acgctgtaga agctcatgag taccttcgtt ttgactagtt agtggctccc gtaaatctgg 180 aggatgccta gagttatggc cctccgaaga atcggatatc cacaaggtgc aacatctacg 240 gtggaaggtg caacatccgg tccaaaataa cgaaacagtg ccgtacgacc tttagaaatg 300 agtgcatgga tttgaaacat tgcagtacca tggtgcacaa ctctccagcg atggtaaatc 360 atagaccagc cacgggaatc ccg 383 // ID ECORI_CN repbase; DNA; MCOT; 573 BP. XX AC X70875; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 22-SEP-2007 (Rel. 2.02, Last updated, Version 3) XX DE C.nucifera (Ecorep2) repetitive sequence. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Repetitive sequence; EcoRI family; CNECORI; ECORI_CN. XX NM ECORI_CN. XX OS Cocos nucifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Arecaceae; Arecoideae; OC Cocoseae; Attaleinae; Cocos. XX RN [1] RP 1-573 RA Rohde W.; RT "ECORI_CN."; RL Direct Submission to Genbank (20-JAN-1993)W. Rohde, RL Max-Planck-Inst fuer Zuechtungsforschung, Carl-von-Linne-Weg 10, RL 5000 Koeln 30, FRG. XX RN [2] RP 1-573 RA Rohde W., Salamini F., Ashburner R.G. and Randles W.J.; RT "An EcoRI repetitive sequence family of the coconut palm Cocos RT nucifera shows sequence homology to copia-like elements."; RL Unpublished. XX DR GenBank; X70875; Positions 850 1422. XX SQ Sequence 573 BP; 188 A; 95 C; 124 G; 166 T; 0 other; gtttggacct tggtagatcc accagaaggt atagtaccta ttgggtgtaa atggatcttc 60 aagaaaaaga ttggtgcaga tgggaatgtg gagatattca aggctagact agtggcaaaa 120 ggttatagtc aacacgaaag cattgactat caagatacct ttttcccagt ggctatgcta 180 aaatccatcc gcacattgct tgccattgca gtctatttcg agtatgaaat atggcaaatg 240 aatgtgaaaa tggcattctt gaatggatat cttaaggaaa atatctatat ggaatagctg 300 ctacgtttca catccaatga tactgatcag aaggtttgca agctacaaag gtccatatat 360 ggacttaagc aagcatccca gagctggaac actcattcca atgatgtgat caaaatgttt 420 ggtttcatca aaaatgaaga gaaaccatgt atcttcaaaa aggtaagtgg gagcgctgtt 480 gtcttccacg tattgtacgt ggatgacatt ctccttattg agaatgatat tttcatgtta 540 acaacagtca aaatatggtt gtcaaaggaa ttc 573 // ID DEL_LH repbase; DNA; MCOT; 9345 BP. XX AC X13886; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 20-NOV-2006 (Rel. 2.02, Last updated, Version 4) XX DE Lilium henryi del LTR retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; Long terminal repeat; protease; integrase; KW retrotransposon; retroposon; RNase; zinc finger protein; KW LHDEL RNA binding protein; DEL_LH. XX NM DEL_LH. XX OS Lilium henryi OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Liliales; Liliaceae; OC Lilium. XX RN [1] RP 1-9345 RA Smyth R.D.; RT "DEL_LH."; RL Direct Submission to Genbank (04-DEC-1988)Smyth D.R., Monash RL University, Department of Genetics, Clayton, Victoria 3168, RL Australia.. XX RN [2] RP 1-9345 RA Smyth R.D., Kalitsis P., Joseph L.J. and Sentry W.J.; RT "Plant retrotransposon from lilium henryi related to Ty3 of yeast RT and the gypsy group of drosophila."; RL Proc. Natl. Acad. Sci. U.S.A 86, 5013-5019 (1989). XX DR GenBank; X13886; Positions 1 9345. XX SQ Sequence 9345 BP; 2927 A; 1765 C; 1581 G; 3072 T; 0 other; tgtgaaaccc tgaattttcg cataaaacta tgagttacca tctcactccc aatccctctt 60 caaataacgg aaataatttt tcgtttgatt ctttttatgt gatcaaaatg aatattggac 120 ttctggttag actctatcac ctccatgaaa tccatatttg aaattctatc tctttattca 180 gaatatgatt tctacgtata tcgctataga agagagagtt cattttcgcc aagacttaaa 240 attttgtatc ttattaaaag atactattat tacttcattt tagtatcata tcccttcatt 300 agaattattc ttttaatatt gagcaatttt atcttgagct aagatcacca atataattag 360 tttccaaaac ctcaccataa tcgatctctt tttattccca ttattaactc taattgttgt 420 taagagaaaa ctaaatatgt atttatttat ttaattacca cacttaaagg actctatggg 480 ttatcattat caacaattat tacatctcaa tttttgtcta gaaacatcat cattgcaagc 540 tttaaatgac acctcatcat cacccattat tacactccac atttttcaaa agagaatcta 600 aaacctcatc atttctttac atggtaagtc acatccaagc atttatgaga ttctccactt 660 cacaacatca ttattagtac atttattata cttgtcccct ctaaagacta gtctcttcaa 720 acatttatta aacttgtcat tttttcaaaa tattcttcaa agcataatta ttacactcct 780 tggaagataa atcctctaga agaggaatat tcctccccac ttatcatttt aagaaagagt 840 aaaaatgtca tgatggttat aattaatttc tcctcttttg agaaggaata ttcaaaggaa 900 tctttccacc tcaatccact caaggaaaat ggtcaaaaga gatattatta tgtctctcca 960 cctcatggta agtcaaaaga ttccttgcca cttcataatt acaaagattc ctcacctagc 1020 ttataaatag gggacttgag tccattttct caccacacca catctcctcc cctctctcct 1080 ctactcctac actcttccct ctcctccata aaatcttatg aaagccacat cagagaagga 1140 ttaggagttc tctatccatg caataaagcc atctaagcag attgtgaatc atcgtgcttt 1200 gctaagagtt atattgaagg tgatcaattg cttttgaggt aagttactct ctggtagctt 1260 acaaaacaag tatgtaagtg tatttttggt aaatatattc atctatttat ttagaagaat 1320 gatcatgctt aactcaaata ttttcgttcg aggtacataa attcttttgg ttaaaatgtt 1380 cttatttgaa tgcttgactt cacgagatgc tacaaatatt tatttcatag catggtctaa 1440 aatgttctta atagtgtccc taggtgggat cggtgggttt tggggaaagc attgatgaag 1500 ataaattcta tttttggtat aaaatatata tatatatata tgtatatatt ttctaagata 1560 aagagaagaa taaaggaaaa agggatccgc gaccaagcta gggatgtgaa cccccaaatg 1620 tggtcaatcc ttcaagaagg taggatcaag ggtctggact actttgtgga taatgtctac 1680 ttccccggga ttcgtcccaa aagtggagac ttatttggcc gtgttatgag cccttggtga 1740 aagtcctaaa gcttatagta cgcatatagg tgtctccttg gctatgggcg atgggtgatc 1800 ctctgccggc cgggaaaggg tggtgccctg gtgtgaaata aaaccaagtt actggcactt 1860 gtgaagccag gattcacaag tcttctctcc cccataatta gaagattaaa ataagcatgt 1920 ttttgcactt atatatatta tttattcatt cagcaaatac ttctaaattt cacgtgatac 1980 ctatttttct gaatcaaata ttttatactc ttatttcata cttacgaacc tccttcttat 2040 tatcatgttt tagtatcatg ttatattatt agccttatgt atttatttct gaggaccatt 2100 tttcctccat ggtccttagg tgcacctgtt ggggagccat cactgtgacc agctataagg 2160 aagccgcaaa gtactagctt tcttgtaaat aagttgtaat tagttggggt tctgatgggt 2220 tgtagatgct gtgtaccgta cgtcaggacc ggacttgtaa aataagctgt tatgtttata 2280 aataaagttg tatatttttg aaaccactag ctcaaggtat ttgtttcttt tatttctctt 2340 ctccctccct cctttctttt tcccttcaca cccgatattt tttatataaa atgtcgggtc 2400 gtgataaagt ggtatcagag ctttaggttc caggtaatcc taggactggt tagggtgagt 2460 ttttgagttg tttctttccc ttatgttgga ccttgttcca ttttcagatg gtgcgagaaa 2520 atgatagccg ttcctccact ggagggaatg tagtggaccc atttgcacaa cttttggccg 2580 tactccagaa tatgactaat atccttcacc aataacaagc tgccatttct catcaataag 2640 ccgagcaatc tgcaaggcag ggataagaat ctcgacccag gcttattaag gaatttaaag 2700 gcttaaatcc cccgatattc aagggagacc ctgatccttt ggaagcccat aggtggatac 2760 ggcatgttac taaaattttg gatactttgg gagttactga tgaacaaaag gtcattcttg 2820 cctcctttca acttcaagga gaagctgaat tctggtggga tgctaaagta agaagccgtg 2880 aagatgatac tactcagata aaatgggatg aatttgtaga ggtatttact gaaaaattct 2940 ttccagatac tgtacgtgat gatctcgaaa gataattcat gaccctggtg caaggttccc 3000 ttacagtggc ccagtatgaa gccaaatttg aagagttatc ccgctatgcc ccgtaccaag 3060 tagatataaa tattcgaaag gtaaagaggt ttgaacaagg acttaaacta tctattacaa 3120 agcaactatc ttcacactta attaaagatt atagagaagt tatcactcgg gctctaagtg 3180 tggaaaaaag agaacaaaga gaggcccaaa ttatggcaaa aagatctaag aagaatagag 3240 gacacaacca tccttataca aggaaagaac ctcatcgtca ataatctaat gataaatctc 3300 agtgtccaaa tcctctctct ccaggaaagg tctgctactc atatggacaa cctggacatt 3360 tcaaatcaaa ttatctaaca cttatggctc ctccataaca acaacatcca cctccatatc 3420 gccctcctca aaatcagcca agacctcctc agcaccaagg cgaaggaccc agagtcacaa 3480 gggttaatgc tttaatagct caagatcctg gagtatcagg tactatgata agaagcatac 3540 tttctatttt tagctcatta tgccatgtgc ttatagatac aggatccaca cattcattta 3600 ttactccaag aatcataaaa atgctagaaa tacctgtaca acctctaggc tatatcctat 3660 cagttatctc gccaataggt actagtactt ttgttaacca agtttgtaaa ggatgcatga 3720 ttacaatagg aaatcaagaa ttaactgttg atctgattat actagacctt gaagatcctg 3780 atattctatt aggtatggat tggctagctg cataccatgt tgtcttagat tgtttctcca 3840 agaaggttac ctttcatctt ccaggaattc cagagtttca ttttcatggg gagacacaac 3900 ataccttctt cccaactttc acacatcaac ccaacttatc ttacttggca agcttggcca 3960 gtgaaataaa tattactcct tctacagatc tttcgttgat tgtaagagaa tatattaatg 4020 tatttcctga tgatctccct ggtcttcctc ctccacgaga gattgaattt caaattaatc 4080 tacttccagg aacctctcct atctcaataa caccttatca tatggctcca agtgaattac 4140 aagaactcaa agaacaactt gaagatcttt taaataaagg gtttattaga ggaagtacat 4200 ctccttgggg agcgcatgtg ctctttgatc caaagaagga tgatagcaag cgaatgtgta 4260 tcgactattg aaaattaaac agtgtcacgg tgaaaaataa atatcctctt cctaggattg 4320 atgatttatt tgaccaacta aatggagcat aatatttttc taaaattgat ttacggttca 4380 gatatcatca acttagaatc agggcataag acattcctaa aacagctttc cgaactaggt 4440 atggacatta tgaatttttg gttatgccct ttggattaac aaatgtacct actgccttta 4500 tgaatttaat gaatagggta tttcgagaat atcttgacaa atttatcgtg gtatttgtgg 4560 attatgtcct tatctactct cgtacccaaa aagaccatga acatcactta aggatttcat 4620 tacaactcct aagaaataat cagttgtatg ctaaactaag taaatgtgaa ttctggatgg 4680 agaaggtaaa attcttggga catgtagttt cccgtgaagg tattgtggtt gatcctgtta 4740 aagtaaaggc agtgatgaac tgggaactcc caaagaatat ttttgagata agaagttttc 4800 tgggactagc tggctattat agaaggttta ttaagggatt ttccaagctc gcagctctaa 4860 tgactcaact cacgaaaaag ggtgaaaatt ttaattggac caaaaagtat caaaactctt 4920 ttgatgaatt aaaaagatga ctcactactg taccagttct aactattcct attagtgggt 4980 gaccctttgt cgtctacact gatgcctctt tggcaggact cgaaggagta ttaatgcaag 5040 acggaagggt tgtagcttat gcatccaggc aacttaaagt acatgagaat aattatccta 5100 cacatgactt agaacttgca gttgtaatct tcatattaaa attatggagg cactacttat 5160 atggtgaaga ctttgaactt tattgtgatc ataaaagctt aaaatatata agcactcaga 5220 aggatcttaa tctaaggcaa cggtgatgga ttgaagtatt aaaagacttt gatttttcca 5280 tcttttacca tccaggaaaa gctaatgtgg ttgcagatgc cttaagtaga aaatctcaaa 5340 tatctcatct catttcagcc aggcatgagt tcttcgtaac aattgaaggc tttaatcttt 5400 tagtacgata tgattctcat catacagttt tatgcaatct tcgagctaaa cccaacctga 5460 tcaatgtgat aagtgatgcc caaagatttg attctgagtt agaagctatt catgaaaata 5520 ttatacaggg gaagcaagat aaagattgga ctatagatcg ggataatgct gtaagattct 5580 aaggaagatt ggtagtccca ttagatcagg atatccgaac aaaagttttg gaagaatccc 5640 atagatcaaa attcacaata caccctggaa gcacgaagat gtatcgtaac cttaaaataa 5700 atttttggtg gagtggcata aaaagagaag ttgtcgagta tgtctcaaga tgtttaatct 5760 gccaacaagt taaagcggat catcatcatc attcaggatt attacaacct ctccctgttt 5820 cagaatagaa atgggaacat attttaatgg atttcatcat aggctttcca ttatctaagc 5880 gatgtcatga ttcaatttgg gtcatagttg atcggtttac aaagtcagcc cactttattc 5940 ccatacatac cactatttca ggaaaggatc tcgcataact ttatattaaa gaaattatca 6000 gattacatgg gattcccacg actatcgtaa ctgatcgaga tacaaaattt acttccagat 6060 tttggggtag cttataaaag tccctgggta cagaactctt tttcagtact gcatttcacc 6120 cccagacaga tgggtaatct gaaagaacta ttcaaatact tgaagatatg ttaagatctt 6180 gctctcttga cttcaaaggt aattgggaag aacatctgcc tttagtagaa tttgcttata 6240 ataatagcta tcaatctagt attggtatgg ctccttttga agctttatat ggtagaccat 6300 gccgatctcc tacctgttgg gcagaaattg gtgaacatca tttaattaga ccagagctga 6360 tacaacaaac cacaaatgca attgaagtaa ttaaaaggag attaaaagct gctcaagatc 6420 gtcagaagag ttatactgat ataagaaggc atccattaga attttcagta ggaaaccaca 6480 tattcctcga ggtgtcacct agaaagggaa cttcttattt tgtctttaaa ggtaaactct 6540 ctcccaggta tactggtcca tttgaaatct tagaaataat ttggcccgtg gcttatcgtc 6600 tagctctacc tccaatgtta tcaagcatcc ataatgtctt tcacatatca atgctaagga 6660 agtatgaacc tgacccttca catatccttg attgggaaga tttaaggctc aacccagata 6720 tctcctatga agaaaagcca gtacaagttc ttgcctcaga aagtaaagtg ttgcgtaaca 6780 aaatcattct aatggttaag gtcttatggc aacaccactc agaagaagaa gcaacttggg 6840 aactagaggc agacatgcaa gaataatttc caaatctttt ctcaggtatg taaatttcga 6900 ggacgaaatt ttcttttggg ggggaagaat tatgaaaccc tgaattttcg cataaaacta 6960 tgagttaccg tctcactccc aatccctctt caaataatgg aaataatttt tcgtttgatt 7020 ctttttatgt gatcaaaatg aatattggac ttctggttag actctatcac ctccatgaaa 7080 tccatatttg aaattctatc cctttattca aaatatgatt tctacgtata tcgctataga 7140 agagagagtt cattttcgcc aagacttaaa attttgtatc ttattaaaaa ataccattat 7200 tacttcattt tagtatccta tcccttcatt agaattattc ttttaatatt gagaaatttt 7260 atcttgagct aagatcacca atataattag tttccaaaac ctcaccataa ttgatctctt 7320 tttattccca ttattaactc taattattgt taagagaaaa ccaaatatgt atttatttat 7380 ttaattacca cacttaaagg actctatggg ttatcattat caacaattat tacatctcaa 7440 tttttgtcta gaaacatcat cattgcaagc tttaaatgac acctcatcat cacccattat 7500 tacactccac atttttcaaa agagaatcta aaacctcatc atttctttac atggtaagtc 7560 acatccaagc atttatgaga ttctccactt cacaacatca ttattagtac atttattata 7620 cttgtcccct ctaaagacta gtctcttcaa acatttatta aacttgtcat tttttcaaaa 7680 tattcttcaa agcataatta ttacactcct tggaagataa atcctctaga agaggaatat 7740 tcctccccac ttatcatttt aagaaagagt aaaaatgtca tgatggttat aattaatttc 7800 tcctcttttg agaaggaata ttcaaaggaa tctttccacc tcaatccact caaggaaaat 7860 ggtcaaaaga ggtattatta tgtctctcca cctcatggta agtcaaaaga ttccttgcca 7920 cttcataatt acaaagattc ctcacctggc ttataaatag gggacttgag tccattttct 7980 caccacacca catctcctcc cctctctcct ctactcctac actctttcct ctcctccata 8040 aactcttatg gaagccacat cagagaagga ttaggagttc tctatccatg caataaagcc 8100 atctaagcag attatgaatc atcgtgcttt gctaagagtt atattgaagg tgatcaagtg 8160 cttttgaggt aagttactct ctggtagctt acaaaacaag tatgcaagtg tatttttgtt 8220 aaatatattc atctatttat ttggaagaat gatcatgctt aactcaaatc ttttcgttcg 8280 aggcgcataa attcttttgg ttaaaatgtt cttatttgaa tgcttaactt cacgagatgc 8340 tacaaatctt tatttcacag catggtctaa aatgttctta atagtgtccc taggtgggat 8400 cggtgggttt tggggaaagc attgatgaag ataaattcta tttttggtat aaatatatat 8460 atatatatat atgtatgtat gtatatattt tctaagaaaa agagaagaat aaaggaaaaa 8520 gggatccgcg accaagctag ggatgtgaac ccccaaatgt ggtcaatcct tcaagaaggt 8580 aggatcaagg gtctggacta ctttgtggat aatgtctact tccccgggat tcgtcccaaa 8640 agtggagact tatttggccg tgttatgagc ccttggtgaa agtcctaaag cttatagtac 8700 gcatataggt gtctccttgg ctatgggcga tgggtgatcc tctgccggcc gggaaagggt 8760 ggtgccctgg tgtgaaataa aaccaagtta ctggcacttg tgaagccagg attcacaagt 8820 cttctctccc ccataattag aagattaaaa taagcatgtt tttgcactta tatatattat 8880 ttattcattc agcaaatact tctaaatttc acgtgatacc tatttttctg aatcaaatat 8940 tttatactct tatttcatac ttacgaacct ccttcttatt atcatgtttt agtatcatgt 9000 tatattatta gccttatgta tttatttctg aggaccattt ttcctccatg gtccttaggt 9060 gcacctgttg gggagccatc actgtgacca gctataagga agccgcaaag tactagcttg 9120 cttgtaaata agttgtaatt agttggggtt ctgatgggtt gtagatgctc tgtaccgtac 9180 gtcaggaccg gacttgtaaa ataagctgtt gtgtttataa ataaagttgt atatttttga 9240 aaccactagc tcaaggtatt tgtttctttt atttctcttc tccctccctc ctttcttttt 9300 cccttcacac ccggtgtttt ttatataaaa tgtcgggtcg tgaaa 9345 //