ID Gypsy-16_PR-LTR repbase; DNA; PLN; 328 BP. XX AC AAQX01002021; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PR_; KW Gypsy-16_PR-I; Gypsy-16_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-328 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002021; Positions 8075 7748. XX SQ Sequence 328 BP; 80 A; 86 C; 78 G; 84 T; 0 other; tgtaatgtgc ccctcccatt tacatatgta ggtagatcta tataggtaga tctacaaagt 60 aggtacaaag gcacgcggct agcgtgtgcc tcgttgtcat cctgcgattg gttgaaagtg 120 gggagccaga cccatttcga ccaatcaggt gtcaacctgc atttgagtgg ttcacatgga 180 tccgagggcc acccgccccg gtcccaataa taaaccagag ttgattttac cctagactaa 240 acacttggtc tcagtatacc tgagcttatt ggacgcttcc tcaccgctac gtgtaagcta 300 gtgacgggca ctcacctggc ccgttaca 328 // ID Gypsy-57_PIT-LTR repbase; DNA; PLN; 285 BP. XX AC AATU01004497; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_PIT_; KW Gypsy-57_PIT-I; Gypsy-57_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-285 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004497; Positions 38347 38631. XX SQ Sequence 285 BP; 85 A; 73 C; 73 G; 54 T; 0 other; tgtgagcagc cgcagtaaga tgctctccat cgcacctgca gcacagaacg cacgtgctac 60 tcagaagatg acgtgctgct ccctgggacc agcaggtgcg ccatcttcca gtggaagaag 120 gcaactacat atgcttgacg ttgaagtagg attagacagc tagctacgag cgcctaggac 180 agcaggacta gttagcagaa cgagtagcaa agctgtaagc atctaattcg aactcagttg 240 tggatttacc accaagaaca caaatcgacg gtcaaccacg tgaca 285 // ID Copia-35_PIT-LTR repbase; DNA; PLN; 267 BP. XX AC AATU01000867; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-35_PIT_; KW Copia-35_PIT-I; Copia-35_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-267 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000867; Positions 60408 60142. XX SQ Sequence 267 BP; 65 A; 56 C; 73 G; 73 T; 0 other; tgttgtgaat tcagtatgct ctgcaagttg aagcagcact cgcattggag cagtctccca 60 caggagagac ccggcaagtg tcccgtgagt gaaggtcgct ggggtttctc acgttgtatt 120 tacatttagt tagctcagtc tccatttcgc agggtaagaa acgcgttagt gtcgagagag 180 ctgaaggcta agtagtcaat aggaattcgt gtgtgcatta cattggattc ctagcttacg 240 tcgagaagtc tctgcatacg cgcaaca 267 // ID Gypsy-42_PIT-LTR repbase; DNA; PLN; 384 BP. XX AC AATU01002694; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_PIT_; KW Gypsy-42_PIT-I; Gypsy-42_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-384 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002694; Positions 150742 151125. XX SQ Sequence 384 BP; 110 A; 96 C; 100 G; 78 T; 0 other; tgtcacggtg tacagttaga cggtggatta acgatgctgg ctgactgcct gcagaaggtc 60 tactcactcc agactccccg gaccacgtcc aagcaagcgg gacctgcggc caagacagtg 120 acgttccaag tgtgaagtcg tggagcagct ggtcgtggcg ggaattggag ctggaccgcc 180 acgcacgagg gatctgacaa aaggtaagaa gctctaaaaa ctcttagcga ggtgaaacga 240 ggaagtcagt cgtggatttc cttctaacaa gaaacacaag aatatatcaa cttttacatt 300 actatcacag tagtgtcgct aatactacta cctcctacgt cggctcaaga tactcacgac 360 cccgattaga ggaagaccgc gaca 384 // ID Copia-12_PSo-LTR repbase; DNA; PLN; 186 BP. XX AC AAQY01000186; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PSo_; KW Copia-12_PSo-I; Copia-12_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-186 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000186; Positions 294507 294322. XX SQ Sequence 186 BP; 52 A; 45 C; 44 G; 45 T; 0 other; tgttgcggat tatactgatc cccactatac tacttgcagt tggagtaaga caaaaggtga 60 aagagaagaa tctaggcctc agttgagaat atacacacga ccaacaaggt ggcttttgcc 120 gcccagctga gtgttgtcgt tgcttccatc tctgcgtgag cagcaccaag aggacactcc 180 acttca 186 // ID Copia-4_PPa-LTR repbase; DNA; PLN; 379 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.04, Created) DT 30-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Copia-4_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-379 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 572-572 (2010). XX DR [1] (Consensus) XX SQ Sequence 379 BP; 106 A; 69 C; 75 G; 129 T; 0 other; tgttaataga gtgtgtaact cctattagac ataaagtaga atgggcagtt gacaccgctt 60 tgccaattga caagttgtag ctgccatttg ttggtggtaa taccatttag ccgccatagc 120 ctaccaagcc gtcatatggc ctaacaagac gagtgtccac atgttaattg gacattgttg 180 actaggctag ttgtttgtgt gttcacacta gaaagtccat gtggttagac catggacttg 240 tactatataa ggagtcaaac tagaggttca ttttaagcat tagttctctt gaatccttga 300 tagtaaggta gagaattctt ttgtatttgt ttcataaaac ttctatccta gcaatacact 360 tcctctttat tttatcaca 379 // ID Gypsy-8_ES-LTR repbase; DNA; PLN; 333 BP. XX AC CABU01008853; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_ES_; KW Gypsy-8_ES-I; Gypsy-8_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-333 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01008853; Positions 7871 7539. XX SQ Sequence 333 BP; 87 A; 85 C; 88 G; 73 T; 0 other; tggaggtcag gatatggaga ttcggggagc acagatacac gtacataaag agtaggatct 60 gagaggatat gtgataatag attaccgttc ttcgagggtc tatgactctt acgattccca 120 acggctgcga agagttgatg aatctttagg agaatgggaa aagggtccac gaaggctcgc 180 ccactctcct cgccacccta gcttgactga gttcgctcgg tcacgcttgg cattcctcgc 240 catattgcac caaaggaaat agccaacctc cggtggcagg acatagccac cacactcccg 300 gactctctgc tcagccagag tagagggctt cca 333 // ID Gypsy-2_ES-LTR repbase; DNA; PLN; 561 BP. XX AC CABU01003737; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_ES_; KW Gypsy-2_ES-I; Gypsy-2_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-561 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01003737; Positions 10461 9901. XX SQ Sequence 561 BP; 153 A; 129 C; 150 G; 129 T; 0 other; tgtggcgaga atgggtttca gtctagttcg tgaggcgtta ttggttatta tctgaaacgg 60 tcgacatatt tctgagtgtc tagacgactg gaccgaccaa ccaagtagcg tagacctagg 120 gctgatgtgg ccagctggat gcatcggacc tagggcctag gcattcacga gcgtagaccc 180 aggagtatga gagtaagcca gtaacatgtg tttgtgcatt tcattggata agtgcaatca 240 atcagatggt tgttgtgtag tagtaggaga atcgcagacc acggactgac gtgcgactgt 300 ttgtaacgct tggttgcagt tggaccgtcc ggaagcttgg ctccgttaag cctcgcacat 360 gaatcactca taaagctttg ccctcagtct cgccgtacag agctgatagc aagattgccg 420 agagtcaata ataagacacc caaaaacaac cgtgccgaac acaaagacgc ttgaacacaa 480 gcgcatgcac ttctgacaag gctgagcctg ttagcaagga agaggcagaa ccagtacccc 540 agagtaccag ttctctccac a 561 // ID Copia-10_PR-I repbase; DNA; PLN; 5273 BP. XX AC AAQX01001802; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PR_; KW Copia-10_PR-LTR; Copia-10_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5273 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001802; Positions 17207 11935. XX CC Positions [2168-2662] - Integrase core CC 'TGCAT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 44..5221 FT /product="Copia-10_PR-I_1p" FT /translation="MSGRQPPPPGTSPPPTPAAGGAPRAQQVTTTGTTIRV FT PSATTPVMATLAGQDGSTGGLIAGAGGHVAGVGDYVADDGLPRGGLPFTGF FT VPGNGMQPAGGVSLSRGEVVPSSGLGVATGARPIGMRTPGGAATHGAGVLP FT VEAGVAQTGAGVPRVGLTSVKLDISHKPPVMKGSFDLYSVQLRAFLTRLGC FT WCVVDGSYRSDQQNFTDLAARDNAAREAILYGVPAADAEMICQEESAEAMW FT SRFVDRQTKREYSNYIFTRDEFVSNRYTPDKTMDQWLREMETLRRQLFHYG FT KQITDEDYAETLLGHVSRTHRDVVRQFSKHYVVRDGGAVRPVPTATQVMNA FT LRAESALDERVACEADAKPVHVCSCGKQAKDDSATTKPNGNSSRGKQNRRK FT GRYKANQRNEERKQNCKKKETRTCHECGEVGHLRANCPSRKSDESDRPAIS FT EFKRWENKSGGNNTKRTSKNSSGLCCRVRGASVIAATSVKTSAGTEMEWVL FT DSASDVHVCNNRSVLYNIRKDQLHFFLGYDGNTREDEDVGDVTLRVTSNKS FT PYNELMLPFTNVLLSPEAPDNLLSQDMLENDGWTVKYGFINSQRVCWLRKE FT HVELLLTKTNRRYRLKAMAAAVYKVQSEVRQQTNESDSRVILKRKKDSDSL FT LERWHLRLGHLNPPALRRMVRDEVATGMKVDLSEDMRSPCWSCRAAKMIRM FT SYKKTLTRRATRPFQKLMSDMCYVKEVTYDDYEHFQLIQDEASRYLWGFML FT YRKENSSDVVLAHLKWVIAQGNKVEVFNSDQGKELFNNKLKTFLQGNGIEY FT TTTNSYSPEENGLVERMNGVVLSRVRCLLTAANMPWLLWGEAFGFAIEVMN FT ISGNNALEGDTPYFRRFGERPDMTSLRTWGCIAFIFTPKVLRKSKLENPGK FT PGLFVGYAKHSESYRILNLITGNIVEVRSVEFEEDWTVEASYVIKLLSNRY FT GRGRHALPQIIPYVRLPVMHRETVDVTRRSHDDCTGPSKRQRCEVHVSCGC FT PADERNESAVLTTSGAPGRWLITGQEVPTETAAAVALPTSEGVLQRGANAF FT HREVSEHESGVDSVVDLLNSSQEATARSLPDRQTSPSVGDHDSGYFAGNDV FT DTGNGDQYEGDVSIGNPADLLDRITSYEGFVDMNSEDDDEADGWRDEALRA FT ATSFRRSSRVRRPNVRLQDYEVEIPASLVVQAVNLLMEPQSIQEALQAPDA FT EKWKEALEKEYSDLMRNNTWDLVERPKGKKVLTNKWIFVRKRNPMGQVIRH FT RTRITIKGCQQQYGVNFWETYAPVVSYEAVKLVLLFALHYGLLCEHIDFVT FT AFLNGPIGDDVEIYMEMPEYFDDGSGRVCRLLRSLYGLKQAPLIWYKMLDE FT HLRSCRFKRSKMDNGVYWRVVGGSPIFLTVYVDDVVIAANAKNIKLVVGEL FT ERKFKIKDLGSVSLLLGMEINYILGQAMWISQRGYIEKILSRFNMDKCRAV FT ATPQPVGALPLPAASDAEEVNDENLPYRAIVGCLQYLVQCSRPELANAVRT FT LGKYLNKYTHVNYSMAKRILRYLRGTSDYGLVWEKKETPDLHFVAYADADL FT GNEKDDRHSITGYVLQLNGCTYAYKSRKQRIVTDDTCCAEFVAASECSTMI FT VWTHNLCKELKLKRHKPTVLYQDNQATITVLTEIKGNYKTKSVDLKYHKVR FT DFHERGEFEVRYCPSAENLADIFTKALGPTLFRKFRERLNVVPLPLAIADG FT NAESRD" XX SQ Sequence 5273 BP; 1307 A; 1157 C; 1563 G; 1246 T; 0 other; ggttctgagc ccaaaattac gtttggagcc tatcgcgact gcaatgagtg gaagacagcc 60 gccaccgcca ggaacgtcgc cgccgccgac acctgcagcg ggtggagcac cgagagcgca 120 acaagtgacg actactggga ctacgattcg cgtgccttca gcgacgacgc ctgttatggc 180 tacactagct ggtcaagatg gatctaccgg aggtcttatt gctggtgctg gtggtcatgt 240 cgcgggtgtt ggagattacg ttgccgatga tggtttgcct agaggtggac tacctttcac 300 tgggtttgta cctggaaatg gaatgcagcc tgctggtgga gtgagcttgt ctcgtggtga 360 ggtagtgccg agcagtggtc tcggtgtggc tactggagct cgtcctattg ggatgcgaac 420 acctggtgga gctgctactc atggtgctgg cgtacttcca gtcgaggctg gagtggctca 480 aactggtgct ggagtgcctc gagttggttt gacttctgtg aagctggata tttcgcacaa 540 accaccagtg atgaaaggaa gttttgatct ttattcagta cagcttcgtg ctttcttaac 600 tcgcctaggt tgttggtgtg tggtggatgg atcttaccgt agtgatcagc agaactttac 660 tgacttagca gcacgagata atgcagctcg tgaggccatt ttatatggcg tgccagcagc 720 tgatgctgag atgatctgcc aagaggagtc tgcggaggct atgtggagtc gctttgttga 780 cagacaaacg aagcgcgaat actccaatta catcttcact agagatgagt ttgtctcgaa 840 tcggtacaca cctgacaaaa ctatggacca gtggcttcgg gaaatggaga cactgcgccg 900 ccagcttttc cattacggca agcagatcac tgacgaagat tatgctgaga ctttgctggg 960 tcatgtgtcg aggacacatc gtgatgtcgt acgtcagttc tcgaaacact acgtggttcg 1020 tgatggtgga gctgtacgac ctgtacctac tgcaacgcag gtgatgaatg ccctacgtgc 1080 tgagtctgct cttgatgaac gtgttgcttg cgaagcggac gcgaagcctg tgcatgtttg 1140 ctcatgtgga aagcaagcga aggatgactc ggctacgaca aagccgaacg ggaattcaag 1200 tagaggcaag cagaacagaa ggaaaggtcg ttataaagca aatcaaagga acgaggaaag 1260 gaagcagaat tgcaaaaaga aagagacccg aacctgccat gagtgtggtg aagttggaca 1320 tcttcgagcc aactgtccaa gtcggaagtc ggatgagtct gaccgtcctg ccatctcgga 1380 gttcaagcgg tgggagaaca agagcggtgg taacaatacc aagcgcacta gcaagaattc 1440 aagtggtctt tgttgtcgtg tgcgtggtgc ttctgttatt gcagctacgt cggtcaagac 1500 ctctgctggt actgaaatgg agtgggtcct tgattcggcg agtgacgtgc acgtatgcaa 1560 caaccgctca gttctgtaca atatccggaa ggatcaattg cacttcttcc tggggtacga 1620 cggaaataca agggaagatg aggacgttgg tgacgtgact ctgcgggtga cgagcaataa 1680 gtcaccatat aatgaactga tgttgccctt cacgaatgtg ttgctctcac cagaagcacc 1740 agacaacttg ctgagccagg acatgctgga gaacgatgga tggactgtga agtatgggtt 1800 tatcaactca caacgtgtgt gttggctacg taaagagcat gttgagctgc tattgacaaa 1860 gactaaccgt cgataccgct tgaaggcgat ggcagcagct gtgtataagg tgcagagtga 1920 agttcgacag cagacaaatg aaagtgactc aagagtgatt ttgaagcgta agaaggacag 1980 tgattctttg cttgaacgct ggcatttacg tctgggtcat ctcaacccgc ctgccctgcg 2040 gcggatggtg cgagacgagg tcgctaccgg catgaaggtt gatctgtctg aggacatgag 2100 atcgccgtgt tggtcgtgta gagcggcaaa aatgatccgc atgtcgtaca agaagacact 2160 gactcgtcga gcaactcggc cattccagaa gctgatgagt gacatgtgct acgttaaaga 2220 ggtcacttac gatgactatg agcactttca attgatacag gatgaggcta gtcgctatct 2280 ctggggcttt atgttatatc gaaaggagaa ttcctctgat gtggtgctgg ctcacctgaa 2340 atgggtcata gcgcaaggaa ataaggtgga ggtgttcaac tcggaccaag gcaaggagct 2400 cttcaacaac aagttgaaga cgttcctcca aggcaacggg atcgagtaca ccacaacgaa 2460 ctcatacagt cctgaagaga acgggttggt ggagagaatg aacggagtgg tgctctctcg 2520 tgttcgatgc ttgctgactg cggccaatat gccgtggcta ctttggggtg aagcattcgg 2580 gtttgctatc gaagtgatga acatcagcgg aaacaatgca cttgaaggtg atactccata 2640 ctttcgccgc ttcggtgagc gcccggatat gacctcgttg cggacgtggg gctgcatagc 2700 tttcatcttc acgcccaagg tgttgcgcaa gagcaagcta gaaaaccctg ggaagccggg 2760 attgtttgta gggtacgcga agcattcaga gagctatcgc atcctgaact tgattacggg 2820 taacattgtg gaagttcgct cagtcgagtt tgaagaagac tggactgtgg aggcttcgta 2880 tgtgatcaag ctactctcaa accgctatgg tcgaggacgg catgcgttgc ctcagatcat 2940 accctacgtg cgactacctg ttatgcatcg agagactgtt gacgtgacgc gccgctctca 3000 tgatgattgc acgggccctt caaagcgtca acgttgtgaa gttcacgtta gctgtggttg 3060 tcctgctgat gaaagaaacg aatctgctgt tttgacaacg tcaggtgcgc ctggtcgttg 3120 gctgataacg gggcaagagg ttccaacgga gactgctgcg gcagttgctc tgccgacatc 3180 cgagggtgtc cttcagcggg gagctaacgc ttttcatcgt gaggtgtctg aacatgaaag 3240 tggtgttgat agcgttgtag acttgcttaa tagcagtcag gaggcaacag ccagatctct 3300 gccggatcga cagacttcgc cttcagtggg agaccacgat agcggttatt tcgcaggaaa 3360 tgatgttgat actggtaatg gcgatcaata tgagggggat gttagtattg gaaacccggc 3420 cgatctattg gatcgtatca cgtcgtacga gggctttgtg gatatgaaca gtgaagacga 3480 cgacgaagcc gatgggtgga gagatgaagc cttgcgcgcg gcaacatcgt ttcgccgttc 3540 ttcacgtgtt cgtcgtccca atgtccgact gcaggactat gaagttgaga ttcccgcgag 3600 tttagtggta caagctgtaa acttgctcat ggagccacag agtatccagg aggctcttca 3660 agcacctgat gctgagaagt ggaaagaagc tttggagaag gagtattctg acttgatgcg 3720 caacaacact tgggacctgg tggagcgccc aaagggaaag aaggttctga ctaacaagtg 3780 gatcttcgtg aggaagcgga acccaatggg acaggtgatc cgccaccgca cgcgcattac 3840 gatcaaaggt tgccagcagc agtacggggt aaatttttgg gagacgtacg ctccggtggt 3900 ctcgtacgaa gcagtcaagt tggttttgtt gtttgcgttg cattacggtc tgttgtgcga 3960 gcacattgac tttgtcacgg cattcttgaa cggcccgatc ggggacgacg tagagattta 4020 catggaaatg ccggagtatt ttgacgacgg aagcggtcgt gtgtgtaggc tattaagaag 4080 tctatatgga ttaaagcaag cgccgttgat ctggtacaaa atgctcgacg agcacctacg 4140 ttcatgccgc tttaagcgat cgaagatgga caatggggtg tactggcgag tagtgggagg 4200 aagtccgata tttctgactg tctacgtgga cgatgttgtc atcgctgcca atgcaaagaa 4260 catcaagctt gtcgtgggcg agttggaacg caagttcaag atcaaggatt tagggtctgt 4320 gagcttgttg ttgggcatgg agattaacta cattctaggc caggcaatgt ggatctcgca 4380 gcgcggctac atcgagaaga ttcttagccg atttaacatg gacaagtgcc gagcagttgc 4440 cacgccgcaa cccgttggtg ctcttccttt acctgcagct tcggatgcag aggaagtaaa 4500 tgatgagaat ctaccatatc gtgctattgt gggatgtctt cagtacttgg tacagtgctc 4560 tcgtccagag ctggctaacg ccgtgagaac gttgggcaag tacttgaaca agtacacaca 4620 cgtgaactac agcatggcca agcggatcct acggtacttg cgaggtacct cggactacgg 4680 tcttgtgtgg gagaagaagg agacgcccga cttgcacttt gtggcgtacg cggacgccga 4740 tcttggaaac gagaaggatg accgccactc gatcacgggg tacgtgttgc agcttaacgg 4800 ctgtacgtat gcctacaagt cacgcaaaca gcggatcgtc acagacgaca cgtgctgcgc 4860 cgagtttgtc gccgcgagcg agtgctcaac catgatcgta tggacgcaca acttgtgcaa 4920 agagctcaag ctcaagcgtc ataaacctac agtactctac caagacaacc aggcaacgat 4980 cactgtgcta acggagatca agggaaacta caagacgaag agcgtggacc tgaagtacca 5040 taaggtgcgg gactttcatg agcgtggcga gttcgaagtg cgctactgcc catcggcaga 5100 aaacctcgcc gacatcttta cgaaggcgct cggtcctacg ttgtttcgaa agtttcgaga 5160 gcggttgaac gtagtgccgt tgccgctggc cattgcggat ggcaatgcag aaagccgtga 5220 ctagcttgcg agctaggcga acgactgcga gcaaggctga ctcgaagtgg gag 5273 // ID TKM1_LTR repbase; DNA; PLN; 385 BP. XX AC AJ439546; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Kluyveromyces marxianus retrotransposon TKM1_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TKM1_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Kluyveromyces marxianus OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kluyveromyces. XX RN [1] RP 1-385 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439546; Positions 1 385. XX SQ Sequence 385 BP; 137 A; 85 C; 57 G; 106 T; 0 other; tgttgatcct ggccgtccta cgacgttgtc tagggcgcca gatattatac caactataaa 60 agctaaggct aaagcctaga tatactagga tcaaggctaa agcatttgat aattgaattg 120 attccaaaaa gtatataagt agaaggtttc ttcatccaat tcccactttc gaattgacaa 180 cttacttact atccaattat aagtcaagtc agaagaaacc aaggagaaca acagtaaata 240 cttacttatc tagtgaatcc aacaattcaa ttaccaatta attagtccaa cagcttcaag 300 tcaaaatggc atccaacgac attatttcta ctaacgtccc ttctaaggtc cctactaccg 360 atactgagga atatccagtc caaca 385 // ID Copia-44_PIT-I repbase; DNA; PLN; 4499 BP. XX AC AATU01003873; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-44_PIT_; KW Copia-44_PIT-LTR; Copia-44_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4499 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003873; Positions 67242 71740. XX CC Positions [1886-2386] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..1117 FT /product="Copia-44_PIT-I_1p" FT /translation="MSSTGRPTATSDNFENPRGDVDNQAEGINARGADVFE FT DAHEDPRRNTLGIPDDLHFEPLDQATMEQHDQLQLILQLQSELAAMKRQLA FT ARAPSMSDTSMETAPPSPKKPKIKDVRCSNFKGNEVYPGLGAGFENFIYEF FT EHAIRTEGLVNGSTWTDELKASVIVNFLEGNASRYYHKKSSEWQRRHDGDD FT MPYTEVKRAMRAELGCKLSQLELSTKMRCNKREGDSWHDYLEYLNFIESLM FT EGDQTKMVMEVFGNHSCPELAATLLSSVPDDAADYVVETDRMKRLLYKLRG FT DGRRYGSKRDDRKNHPNVNHSGHLYAGRGQSRSNRSNEERHWHNHRTHDGG FT PDRRPQQSSSGQAFASIGKPRQDTLPCL" FT CDS 1145..4456 FT /product="Copia-44_PIT-I_2p" FT /translation="MPLVKRAKELATIGSANVTAAEEDDDGASNNSDEEAH FT VWVAACDSETRTGAPTSVWTVDSAATHHLCNDRSQLFAIAPATLSVRVANG FT NIEVATEKGSAAIAMTAGGKKHTVLLKNVYYSKGIEHNLISVAQLTQRDYT FT CKFSKRQCRIKSDTGNLIAEVGKSPVNGLWSVGIEEGIASFAAMKTSTLRQ FT WHERLGHVNYQDLVRMIDKKLAKGIVATNRKVDFCMNCAEAKQARRAKNQQ FT DTSTSAPTDEPGATLSVDLKVDMTPDRLGHKHILTIVDHATNYNRVYLLHR FT KSEAERHLEDFISEFERQYETTVKVIRSDGGGEFLSDRLDRFLLNRGIRHQ FT TTESGMSSSNGKAERFHRTVMNSGRAMLWASALSQRFWGDAVLYASYIRNY FT LPTRANADHASPIEALSGKVPTVSHILRFGTKCTKHVAHSAKRSAKKRAEK FT AIVIGIDSQKKAYKVYIPRTQRIVSTTNIQNIDRLDARAVGRYMDAVDAEQ FT NEVATELENEEPTGSSNDDEHQDGTPADVHQLSARAIQRVFGLNRGARPLP FT NDEFSLPKSFLNKFSTPVTALLTVSLQEGVAFSTILESDKIKEPTTVKEAM FT NSQHWHEWEKAMQEELRAIAANATWEIVDTPRDGNLITAKWVFKLKFDNMG FT ELERFKARLVARGFNQKYGVDFAESFAPVLKIASLRLIVALAALWHATIRQ FT GDVPNAYLRATLDRSIYMRPPEGLTLPKGKSILLLKSLYGLKQSGKLWNDE FT IHNYLQELGYQRSKLDPCLYFQRIDGKLTVLGLYVDDVVVVSQRDSDAVWT FT MRKLNDQFQIKDLGEAKKCLGIYIEQTDAGIYLHQSSNINNLLAKLGMENC FT RPVATPMESTRSLYDADSKPFFYTGIMRETIGSLLWLSTCTRPDITMPVNY FT LARFVTSPTSTQWTAVKRVLRYLRGSRDLRLAFLRPQSPQRGLAVAIFSDA FT DWAGDKEAKSTSGGLLTINDMPISWYSKKQSTVALSTAEAEYIAGATAVQD FT CLWVRQLLDEVGLRTKTDNVLLHIDNQSAIKNMENEVTTSRMKHINIKFQF FT IRDAIRKKDVVVTYCPTTEMRADILTKPLGATLHGRNTGMLKLVKLE" XX SQ Sequence 4499 BP; 1306 A; 1163 C; 1139 G; 891 T; 0 other; ggttatgagc tcaactggcc gacctactgc gaccagtgac aacttcgaaa atccgcgagg 60 cgacgtcgac aatcaagctg aaggcataaa cgcacgaggt gcagacgtct tcgaagacgc 120 acacgaggac ccacgcagga acacgttggg tatcccggac gacctacact tcgaaccgtt 180 ggaccaagcg accatggagc agcacgacca gctccaacta attctgcaac tgcaaagcga 240 acttgcagcg atgaagaggc aactggcagc gcgagcacca tcgatgtcgg acaccagcat 300 ggagacagct ccaccatcgc cgaagaaacc caagattaag gacgtccgct gctcgaattt 360 caagggaaac gaggtttacc caggccttgg cgccggcttc gagaatttca tctacgagtt 420 cgaacacgca atcagaactg agggtctcgt gaatggctca acgtggactg acgaactgaa 480 ggcatctgtg attgtcaact ttctcgaagg aaacgcatcc aggtactacc ataagaagag 540 ctcggagtgg caacgacgcc atgatggtga cgacatgccg tacacggagg tgaaacgcgc 600 gatgcgcgcc gaattgggat gcaagttaag ccaacttgag cttagcacca agatgcgatg 660 caacaagcga gaaggtgact catggcacga ttaccttgag tacctgaact tcatcgaaag 720 cctaatggaa ggcgatcaaa ctaagatggt catggaagta ttcggaaatc actcttgtcc 780 tgagctcgcc gctacgcttt tgtcatcggt accggacgac gcggcagatt atgtcgtgga 840 aacagaccga atgaagcgac tgctatacaa actaaggggt gatggtcggc gctacggcag 900 caagcgtgac gatcgcaaaa accacccgaa cgtgaaccac agcggacatt tatatgcagg 960 acgcggccaa agtcggagca atcggagcaa tgaagagcga cactggcaca accatcgaac 1020 ccacgacggc gggcctgata ggagaccgca acaatcgagc agtggccaag ctttcgcgtc 1080 tattggaaaa ccgagacaag atacgctgcc atgtctgtaa tgaacttgga cacaaaatct 1140 tcacatgcca ctggtgaaac gagcgaaaga gttagcgacc atcggcagtg caaacgttac 1200 cgccgcggag gaggatgacg acggggcatc aaacaactct gatgaggaag cacatgtgtg 1260 ggtcgcagcc tgtgactctg agacgcgtac tggtgcacca actagcgttt ggacagtcga 1320 ctctgcggca acgcaccacc tgtgtaacga tcgcagccag ctttttgcga tcgcgcctgc 1380 cactctatct gttcgagttg cgaacggaaa cattgaagtc gccactgaaa aggggagtgc 1440 agcgatcgcc atgacggcag gcggaaagaa gcataccgtc cttctgaaga acgtgtacta 1500 ctcaaaagga attgaacaca acctgatctc cgtcgctcaa ctcacacagc gagactacac 1560 gtgcaagttc agcaaacggc aatgtcgaat caagagcgac actggcaacc taatcgctga 1620 agttgggaaa tcaccagtga atgggctgtg gtcggttggt atcgaagaag gaatagcatc 1680 gttcgctgcc atgaaaacgt ctacacttcg acaatggcat gaacggcttg gtcatgtaaa 1740 ttatcaagac cttgtccgta tgatcgacaa gaaacttgct aagggcatcg tagcaacaaa 1800 caggaaggtc gatttctgta tgaactgcgc agaagctaaa caagctcggc gggcgaagaa 1860 ccaacaagac acttccacct ctgctccaac cgacgaacct ggtgccacgt tgtctgtgga 1920 cttgaaagtc gatatgacac ctgaccggct tggtcacaag catatcttga caatcgttga 1980 ccacgcaaca aactacaacc gagtctactt gcttcacagg aaaagtgaag cagaacgcca 2040 cctcgaagac ttcattagcg agttcgaacg ccagtacgag accacagtga aggtcatccg 2100 ttctgatgga ggtggtgaat tcctgagtga ccgtctcgat cgttttcttt tgaaccgtgg 2160 cattcgccac cagacgacag agtctggtat gtcttcgtct aacggtaaag ctgaacgatt 2220 tcacagaaca gtaatgaact ccggacgagc aatgctatgg gcttctgcac tttcacagag 2280 gttctggggt gatgctgtgc tatacgccag ctacattcgc aactacctac cgacgcgagc 2340 aaacgcagac catgcgtcgc ccatcgaagc gctgtctggc aaagtaccga ccgtctcgca 2400 tatactaaga tttggaacca agtgcacgaa acatgttgct cactctgcaa agaggtccgc 2460 gaagaagcgt gctgagaaag ccatcgtgat cggcatcgac tcccaaaaga aagcatacaa 2520 agtctacatc ccgcgaaccc agcgtattgt gtccaccacc aacattcaaa acattgatcg 2580 cctggatgcg cgagctgtgg ggcggtacat ggacgctgtc gatgcggagc aaaatgaagt 2640 tgccactgaa cttgaaaacg aagaaccaac tggaagtagc aacgacgatg aacaccaaga 2700 tggcacccca gcagacgtcc accagctcag tgctcgtgca attcagcggg tttttggact 2760 gaaccgaggc gcacgaccac tgccgaacga cgagtttagc ttacctaagt cgttcctcaa 2820 caaattttca accccagtga cagcactgct gacagtttct ttgcaagaag gagtcgcatt 2880 ttccaccata ctcgaaagtg acaaaatcaa agagccaaca acagtgaaag aggctatgaa 2940 cagccaacac tggcatgaat gggagaaagc gatgcaggag gagcttcgag cgattgctgc 3000 caatgcaacc tgggagattg tcgacacccc tcgagatgga aacttgatta ccgcaaagtg 3060 ggtgttcaag ctgaagtttg acaacatggg cgagctggag cgctttaaag ctagacttgt 3120 ggcacgtggc ttcaaccaaa agtatggtgt tgacttcgcc gaatcgtttg ctccagtcct 3180 gaaaattgct agcctacggt tgatcgtagc tttagcagcg ctgtggcacg cgactatcag 3240 acaaggggac gttccgaacg cctaccttcg tgccacactg gatcgatcga tatacatgcg 3300 accaccagaa ggcctaacgc ttcctaaagg caagtccata ctgctgctaa agagtcttta 3360 cggcttaaaa cagagcggca aactttggaa cgacgagata cacaattacc tgcaggagtt 3420 gggatatcag cggagcaagc tcgacccatg cctgtacttc cagaggattg acggcaaact 3480 gacagtgctg ggcctatacg ttgacgacgt cgttgttgtt agtcaacgcg acagtgatgc 3540 agtctggaca atgcggaagc ttaacgacca attccaaatc aaagacctgg gtgaagccaa 3600 gaaatgtctc ggcatttaca tcgaacaaac cgatgccggc atatacctcc accaaagctc 3660 aaatatcaac aacttattag caaaacttgg tatggagaac tgtcgccccg tagcaacacc 3720 aatggaatcg actcgaagct tgtatgatgc agacagcaaa cccttttttt acaccggaat 3780 catgcgggag acaattggat cgctactttg gttaagcaca tgcacccgtc cagacattac 3840 catgcccgtg aactatctag cacgctttgt tacgtcgcca acctccaccc aatggacagc 3900 tgtaaagcgc gtacttcgat atcttcgagg gtctcgagac ttaagactcg ccttccttcg 3960 accgcaatct ccgcaacggg gcctagctgt tgccatattc agcgacgcag actgggcagg 4020 ggataaggag gctaagtcca cctcaggagg cctgctgaca atcaatgaca tgccaatctc 4080 ctggtatagc aagaagcaat ccaccgtagc actctcgacg gccgaagccg agtatatcgc 4140 tggagcaact gcagtacagg actgtttatg ggtacggcaa ttactcgacg aggtcggcct 4200 gcgaacaaag actgataacg tcctactgca cattgacaat cagagtgcca tcaagaacat 4260 ggaaaacgaa gtgactacat cccgcatgaa acacatcaac atcaagtttc aattcatacg 4320 cgatgcaatc cgcaagaaag atgttgtagt gacttactgc cccacgactg aaatgagggc 4380 tgacattcta accaaaccac tcggtgcaac attacacgga cgcaacacag gtatgcttaa 4440 gttggtcaag ctagaataac cacagggctg agacacaaaa tgttcctatc gaggaggag 4499 // ID Gypsy-40_PIT-I repbase; DNA; PLN; 7410 BP. XX AC AATU01010462; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_PIT_; KW Gypsy-40_PIT-LTR; Gypsy-40_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7410 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01010462; Positions 12760 20169. XX CC Positions [6113-6463] - Integrase core CC 'CTAT' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 720..2150 FT /product="Gypsy-40_PIT-I_3p" FT /translation="MAAHGARVAGNDGRGSGAGAVRRPPSPDRSGDGSSNS FT SYSGSNGDDSSSDSSRDRGSERRRRRRRGRRASTANRSRRVRHEQRRKNAK FT DLELAAYKPSPTVSVSTWIAKVDLAVQGARISGRGDWTDEELYFIVGNKLQ FT DNAASWWVQMDQELPESEKTWTRLKEALMRRYGERPDPVMAEWRVYQRMMY FT PGETLADFAAGLRDVTGPNHVSEQTLLGQFYRNLDKTTRMLVKQEPVPTTL FT EQAVDKATAIDDPIDNVARGMVNIGQSWATAPNAYTVPMDGTTGRVAIIPG FT IGSAVDVMATQPGAENSEVAYFTNPRDVYNKFTGLWDVPGGRSWNGRLWKP FT TKKNQKMSRSGSYHGGKRGSSKKRGKVRIVQSMADSSEESDSDGELPQPKT FT KKRKAAIRKPKAPTYPAKDEPQMRTVEARANRWSTTDNRCYACGKFGHFAK FT ECPDPEAKARNDAYLATRTVQTTSATGNDGRA" FT CDS 2401..3852 FT /product="Gypsy-40_PIT-I_1p" FT /translation="MTVRPAMAALRYVRADCQKGNGVQSTGEGGSLTVVGG FT GRLTEEGDTRAVRMLGVEASNGGEQADTAVTMHEYGSDDEEIDETSTTTTD FT GAKERNVAKARRRRTKQERVRAVKQRAIVAATTSDDIDEALAVLDAERQSR FT REQQGREVRAELARRQQLHERQDGQLGTGEHIKLRLVQRQRSVTDTDATGA FT SDDLGVSAEDGLPTATMDVEVERLPVKLDSGERYSVTGTDWMLRGERSKQA FT SPVDVVEGIGGVLLDVLGVWTFNMRNTFGQDVTVSACIIDGCKDEFLVGIG FT FMQQYKAVMDFERNEMRYEDRKKRVVIPFRTDEDGGSAKVATVRLVRRTPL FT TRQTVTPIEVSVTAPDDEKGIFVPTTSYGTVMLATTVTRSRNGKATIFAVN FT VHGGKVKLPSKAELGTWIPLEENMQVLTMNGELDNKKLGAWLKELGDDETP FT LDNEDEVRIGSKETGARNLIIRLLRAYRKYRWITATVRQ" FT CDS 4457..6463 FT /product="Gypsy-40_PIT-I_2p" FT /translation="MLKKCMFATESIKYLGHELSSKGVQSVQRLITAVTEF FT PRPTDAVGVKGVVHLADYYRKFIEAFGSIAAPMTRLLQKNRDWEWTEEQQF FT AFERIKAALTTKPLLIYPNFALPFRLVTDASKVGLGACLMQDHGRGWQPIA FT YASKVNSDAESNYSITELECFAVVWSVKLFRPYLYGRTFTIVTDHSALKWL FT LTTANRAGRLHRWSLTLQEYEFDIVYRPGTTNVVADALSRAPAAVLVVTGR FT RPAKRTIRGTDATDEEAKIESDETATHASHELSGSVEDSTENRTSKPTAAA FT TSDARINPATVYQDTTVSERVDWPTDRPLTRAARRRIEAAGAVVQKTARDD FT DVENVTVEPVVLAMSGDTTTTNDSIVAENGSTVTTEVTAPITNATSMTSAV FT ATTSTEGTALRRRQTDAGESRKPAERQTNGTTPMVVAIRLDEGEEAAPMEP FT TLQVTDDEIVTAQQCSKLVQKLIQDGEYHGMKVKRMHGLVTIDTAYGRRVI FT LPPSLWAIVLKEMHGSVWAGHLRGPHTYGRVSQLYWWPQLLREVNKWVRGC FT QECGSRKARPREVIPPLRSIRGGDVGDRWALDVAGPFPVADGEERYVVAAL FT EYVTRYEVAKCVTQHTAESVASFLMEEIVLKFGALRELLTDGAPEMTGKII FT EQLVMMLQARQVNPVPYHMQ" XX SQ Sequence 7410 BP; 2065 A; 1721 C; 2348 G; 1276 T; 0 other; tgcaggggcg ttgtattgag cgaagatcga ctataaagct acacgaatac gggttatatt 60 gtgagtacgg ttacgaccta acgtatggca aggacgaaaa cgatcatggt gccgacaata 120 actacgggag tgatgacgcg ttcgatgcag ccgtcgggac aagcacagcc agacacgacg 180 acggtgggaa cgacgatctc ccgggatcct gtaatgaacg aggagacatc agcacgacag 240 ccagcacagc cgccaacgat ggcgactgca cagcagccag tagcaccagg gcaacaacct 300 ggttcggacc cagcgacaga cgtgtacgcg ggcagtggaa gagaaacggc agtaccgacg 360 agatctgcag cctcgacatc cgagggagct ggaaggtctg acgaagttaa cttgacagca 420 gcaacgggtg gcggactcgc ggcgaacacg acgaacaccg aggaagatga agcgacagca 480 aacgcatcgg cattgctgac agccatccac cacatgaaga ctacaatgac gagactggaa 540 gcgcgcgtgg gagcgatgga gaccacgaga actacaccgg tagtacaacc ggtggcaacc 600 tcacaaatgc tgtggcaccg aggccacaac aaccagaagc ggcgagcttg gcggaacaac 660 gagtgtcccc agcgcctgta gtgcagacac aagcgcaacc cgcaccggca gcagtaccaa 720 tggcagcgca tggagctcgt gttgcaggca acgacggacg aggatcagga gcaggagcag 780 tgcgacgacc accttcacca gacagaagtg gggatggtag cagcaacagc agttatagtg 840 gcagcaacgg cgacgacagc agtagcgaca gttctcggga tcgtggcagc gaaagacgac 900 gcaggagacg acgcggccga cgagcaagca cagctaatcg gtcacggaga gtacgacacg 960 aacaacgacg caagaacgcg aaggacttgg aacttgcggc gtacaagccc tcgcccacgg 1020 tgtcagtctc aacgtggatc gccaaagttg acctagccgt gcaaggtgct cgtatctccg 1080 gaagaggaga ttggacggac gaagagctgt actttatcgt aggcaacaag ttacaggata 1140 atgcggcgag ttggtgggta cagatggatc aagaactgcc agagagcgag aagacgtgga 1200 cacgtctgaa ggaagcactg atgcggagat acggcgagcg accggaccca gtgatggccg 1260 aatggagagt gtatcaaagg atgatgtatc ccggcgagac attagccgac tttgcggctg 1320 gattacgaga cgtcacgggc ccgaatcacg ttagcgaaca gacactgctc ggccagttct 1380 accggaattt ggataagacg acccggatgc tagtaaaaca agaaccggta ccgacaacac 1440 tggaacaggc ggtggataag gccacggcaa tagacgaccc gatcgacaac gtagcccgcg 1500 gtatggtgaa tatcggtcag tcatgggcga cagcaccaaa cgcgtacact gtacccatgg 1560 acggcacgac tggaagggta gcgatcattc cgggaatagg atcggctgtt gatgtgatgg 1620 cgacgcaacc aggagcggaa aacagcgaag tggcgtactt cacgaaccca cgagacgttt 1680 ataacaagtt taccgggtta tgggacgtcc ctggcggtcg ttcctggaac ggacgactct 1740 ggaagcctac taagaagaac cagaaaatga gtcggagcgg ctcgtaccac ggcggtaagc 1800 gcggaagcag caaaaagcga ggaaaggtga ggatagtgca gtcgatggct gattcaagcg 1860 aagagtcgga ctcggacgga gaactacccc agccgaagac gaagaaacgg aaggcggcga 1920 taagaaaacc caaggcgccg acttatccag caaaggatga gccccagatg cgtacggtag 1980 aagcaagggc aaacaggtgg tcgacaacgg acaacaggtg ctatgcgtgc ggcaagtttg 2040 gtcattttgc gaaggagtgc ccagaccctg aggccaaagc gcgtaacgac gcatacctgg 2100 ctacccgcac ggtgcaaaca acttcagcta cgggaaacga cggacgggcg tagtgagggg 2160 gtcactgcgt tattcaatca ttagaaaata atatgtcaac aattaatcaa ttattaagtt 2220 gagcctattc ctcagaaagt ggcgccaagt ggtgtggaga cggtaacgac gaggggcagc 2280 tggccaacga ctgtgggtag tgaacaatac cccactacca gaggagaagc agcagcagca 2340 gatgcctgtc gggatggaga attggcgggg agagacgagg aacgagcgcg tcgctacgtg 2400 atgacggtac gaccagcgat ggctgcactg cgctatgtac gagcagattg ccagaaaggt 2460 aatggagtac agtcgaccgg ggaaggcgga agcctcacag ttgttggcgg aggacgacta 2520 actgaggaag gcgacacacg ggcggtgaga atgctcggcg tagaagctag caatggcgga 2580 gagcaagcgg atacggcggt gacgatgcat gagtacggtt cggacgacga ggaaatcgat 2640 gagaccagta caacaacaac ggatggcgcc aaagagcgaa acgtggcgaa ggcaagacgg 2700 cgacggacga agcaggaacg ggtccgggct gtgaagcaac gggctattgt ggcggcaacg 2760 acgagtgatg acatcgacga agcattggcc gtactagatg cagaaagaca atcgcgacgg 2820 gagcaacaag gccgcgaagt tcgtgctgaa ttggcacgac gacagcaact acacgaacgt 2880 caggacggcc agcttggaac aggtgaacat attaagttac ggctagtcca gcgtcaacgt 2940 agtgtaactg atacggatgc gacgggtgct agtgacgacc tgggtgtatc agcagaggac 3000 ggtctgccaa cggcaaccat ggacgtagaa gtcgaacggc tacccgtcaa gctggactcg 3060 ggcgaacgtt attcggtgac cggaacagac tggatgttac gaggagaacg gtcgaaacaa 3120 gcgtcaccgg tcgatgttgt ggaaggtatt ggcggagttt tgctggacgt cctgggtgta 3180 tggacgttca acatgcgaaa tacgttcgga caagatgtga cagtgtccgc gtgtattatc 3240 gacggatgca aggacgagtt tctggttggc attggcttca tgcagcagta caaggccgtc 3300 atggactttg agcgcaatga gatgcgttac gaggatagaa agaaacgagt agtgatacca 3360 ttcaggacag atgaagacgg cggtagtgcc aaggtcgcga cggtacgact ggtacgacgt 3420 acgccactga cgcggcagac agtgacgcca atagaagtgt cggtgacggc acccgacgat 3480 gaaaaaggca tctttgtgcc gacaacaagt tacggtaccg tgatgctggc aacgacagtg 3540 acccgcagta gaaacggaaa agccacaatt ttcgcggtca atgtgcacgg aggtaaagtg 3600 aagctgccga gcaaagccga gctcggtacg tggatcccgc tagaggagaa catgcaagta 3660 cttacaatga atggcgagct ggacaacaag aagttgggtg catggctaaa agagttgggt 3720 gatgatgaga cgccgctcga caacgaggat gaggtgcgca tcggcagtaa ggagactggc 3780 gcacggaatc tgattatccg gctgctacga gcctatcgca agtatcggtg gatcacggcg 3840 actgtccgcc agtgaccaca ctagacgttc agcatcacat agatacgagt caggcggccc 3900 cgatcatgct aaagagacgc cggcaggatc aatcagagga cgctattgtc gacagcaacg 3960 tggataagat gctaggagct ggtgtaattg aagaaggcaa cgtcgcgtgg ggattcccgg 4020 ttgtgttgtc aagaagaagg atggtgaagt gcgcttttgt attgactatc gtgcactata 4080 caatgtaacc aagagagatg tctacccgct gccacgcatc gacgagactc tggagacgtt 4140 gggtggcgca atactgttta caacgctgga cctgaggtcg gggtactggc agattggcat 4200 ggctccggag gacaaggaca aaacagcgtt caccaccaaa cgagggctat atcggttcac 4260 tagaatgccc tttggcttga tgaacgcccc gtctacattc caacgcatga tgaacggcgt 4320 gcttcgcgga ttaacgtggc tgtcatgctt agtgtactag gacgacattg tagtgtttac 4380 gcgcggtaac gtggagcagc atgtggttga actcgccgtg gtgttggatc gactctcgac 4440 cgcgggtctc acactaatgc taaagaaatg catgttcgcc acggaatcca tcaaatacct 4500 cggacacgaa ctgagcagta aaggcgtgca gtctgtgcaa cgactaataa cggcagtaac 4560 ggagtttccg cgaccaactg acgctgttgg ggtcaaaggg gttgtgcatc ttgcagacta 4620 ctatcggaag ttcatcgagg catttggttc aattgcagcc ccgatgacac gactgctgca 4680 gaagaatcgt gactgggaat ggacggagga acaacagttc gcattcgaaa ggatcaaggc 4740 ggcactaacg acaaagccgt tactcatcta ccctaacttt gcacttccct ttcgattggt 4800 tacggacgct agcaaggtgg gacttggcgc ctgcctgatg caagaccatg ggcgtggctg 4860 gcaacccata gcctacgcca gtaaagtgaa tagtgatgct gaatcaaact actcgatcac 4920 ggaactggaa tgcttcgcag tagtgtggtc ggtgaagctg ttcaggccgt atctgtacgg 4980 cagaacgttt actattgtta ccgatcactc ggcgttaaaa tggctgttga cgacggcgaa 5040 tcgcgctggg aggctgcaca ggtggtcact taccttgcag gagtacgagt ttgatattgt 5100 atacaggcca ggcacgacaa acgtagtggc cgacgctctg tcacgagcgc cagctgcagt 5160 actggtggta accgggcgac gaccagcgaa gcgaacgata cgtgggacgg acgcgacaga 5220 cgaagaagcg aaaatagaga gtgacgagac ggcaacacac gcttcgcacg agttgagcgg 5280 cagtgtcgaa gacagtacag aaaacaggac gagtaagccg acggcagcag cgacgtccga 5340 cgcacggatt aacccagcca cggtatacca ggataccact gtaagcgaac gtgtggattg 5400 gccgacggac cgaccattga cgagagcagc tagacgacgg atcgaggcgg caggtgcggt 5460 agtacagaag acggcacggg acgatgacgt cgagaatgtg acagtagaac cggttgtgtt 5520 ggcgatgagt ggcgatacaa caacgacgaa cgacagtatt gtggccgaga acggtagtac 5580 ggtgacaaca gaagtcacgg cgccaataac gaacgcaacg agtatgacga gtgcggtagc 5640 tacgacaagt acggaaggta cggcgttgcg aaggaggcaa acagacgccg gcgagagtcg 5700 aaaacccgcg gaacgacaga cgaacggtac gacaccgatg gtagtggcaa ttagactgga 5760 cgagggcgaa gaggcggcac cgatggagcc cacattgcag gtgactgacg acgagatagt 5820 gacggctcag cagtgcagca agctggtaca gaagctgata caagacggcg agtatcacgg 5880 tatgaaggtg aaacgtatgc acggactggt gacaatcgat actgcgtatg ggaggcgcgt 5940 gatactgcca ccgtcgctgt gggcaatagt cttaaaggag atgcacgggt ctgtctgggc 6000 aggacatctg agaggaccgc acacatacgg acgggtgtcg caattgtact ggtggcctca 6060 gctacttcga gaagtgaata aatgggtgag aggctgtcaa gaatgtggga gccggaaagc 6120 gcggccccgg gaagtgattc cgccgctcag gagcatccgt ggtggagatg tcggggatcg 6180 ctgggcattg gacgtagcgg gaccgtttcc agttgccgac ggagaggagc gttatgttgt 6240 ggcggcactc gaatacgtaa cgagatacga ggtagcaaag tgcgtgacgc agcacacggc 6300 cgaaagtgta gcgtcattcc tgatggagga gattgttctc aaatttggag cgttacgcga 6360 actgttgacc gacggtgccc cggagatgac tggcaagatc atcgagcagt tggttatgat 6420 gttacaagca cgacaggtca atcccgtgcc ctatcatatg caataaatcg gcctggttga 6480 acgtttcacc gttcgtggaa ggactgtgtt gccacattta tggcgaatga cgagcagaat 6540 gactggaact tatgggttaa ttcccgtgta cgcgtacaat tcagcgcgtc attcaactgt 6600 agcactgaca ccgaacgagt taatgatggg aagacggctg cgaacgccta atgagctact 6660 aagacgaaca gcggtaacgg aagcaggagc actgctatta tatcacgagc agttgataca 6720 ggcgatggaa cggagccacg agtacgctga gaacgctcga cgaaaggagc aaacccggca 6780 ggcgcgctat tatgaccgaa atgttcggca aaagcgaatg ttcggcgttg gcgaccgagt 6840 gtgggtctac agcccgccac gaggccccaa agcactaaat ttgtacaccc gtggatgggt 6900 cccgtgaaga ttgtggagga cgcgggtgat gagaactttg tactccaaag agaagataag 6960 aatggtacgc cagagacgtt gattgcccat gtgtcatttc tggctagcta ttcatatcct 7020 gcttcactac gggagcaatt ggccaaggat ttaaacgcac aactggaata tgaagatcaa 7080 gacgaaagta caggcgagca tggcgcgaag acaggagcgc ctattcccgc agcgacggga 7140 gttagcggtg cgacggcagc tccgcgaagt gtaaaccaga aacgaggagc agtggaaaat 7200 ccgagaggga cgcgccacgc gggtgacgga ctggtggaga cacgacagag acgacggagg 7260 aaccgggcag ggcagtacga cctcgagtac gagctccggg gaattgttgg tggacggcac 7320 gaacacgaac gaaagtgggt ctcagcatac gaatacgaac gtctctatca agacggtagg 7380 gtcgtggaaa accctacagt tgggaagtcg 7410 // ID Copia-23_PIT-LTR repbase; DNA; PLN; 146 BP. XX AC AATU01002123; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-23_PIT_; KW Copia-23_PIT-I; Copia-23_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-146 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002123; Positions 293004 293149. XX SQ Sequence 146 BP; 42 A; 36 C; 39 G; 29 T; 0 other; tgcggacgat aggcgccgag cagcgtaatc acctgaaagg caagacatag gttagtagga 60 taaggaatct aatctcactc tctcttttgc gtagttaacc acaagtgcgc cagaagtgca 120 gcccgtccga ggacagggct tcaaca 146 // ID Harbinger2-1_ES repbase; DNA; PLN; 7867 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 13-AUG-2010 (Rel. 15.09, Last updated, Version 1) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-1_ES. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-7867 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1214-1214 (2010). XX DR [1] (Consensus) XX CC Harbinger2-1_ES belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-1_ES is a consensus sequence of a family of autonomous CC Harbinger transposons that were active in the red alga genome CC very recently. The consensus was derived from 3 copies >99% CC identical to it. The genome contains only two full-size copies of CC Harbinger2-1_ES; ther are flanked by the unusual TAA target site CC duplications (the same is for Harbinger2-3_TMe). In addition, the CC TWA target site duplications are perfectly defined for 8 copies CC of the non-autonomous Harbinger2-1N1_ES. TIRs are 16 bp long and CC contain 2 mismatches. HArbinger2-1_ES codes for the 350-aa TPase CC (3 exons). XX FH Key Location/Qualifiers FT CDS join(357..524,780..1121,1407..1943) FT /product="Harbinger2-1_ES_1p" FT /note="Harbinger TPase." FT /translation="MFEAYTDMWMAYNMAFIYTMASLVTDDVATRVARRDV FT TNFFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFAVSGREALCVLL FT YRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKP FT RLVEFAEAIYNADCPLTHCWGFIDGTVRGIAPVRFQRWYYNGHKRKHAIKF FT QGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSPSGHPYCLY FT GDPAYGLSDHLACPFSASSHGPLTPDMADFNQRMSHCRVAVEWGFKEMTSK FT WTFVDMKPQQKYLLSPVGKQYLVATLLSNIHSCLNGGNQISQFFDVQPPTL FT QEYLKV" XX SQ Sequence 7867 BP; 1947 A; 2356 C; 1890 G; 1674 T; 0 other; agagagtttc ggaacaaaag ttagatataa gagcgtttca gatttagatt ttagtttagg 60 aatgttctgg gaagattatt ctgtggcgaa cagtctcaga tttaagaaat ctgggacgtt 120 ttatgacgtg ggttctaaac gtgctctgat tggctgattg tcacagtctg ggaagaccca 180 ccgcacacac aacgcgcggc cctccgacac cgggagcgcg aggtacacac acacacgata 240 ccagcagcca gcacacgcac ctcaacctgg ctacaggtcc caccatgtca cgtctgcgca 300 tccgtgagag gatcgcgcgc aaaacacgag cggtagtgtt cttgcagtgc cgacagatgt 360 tcgaggccta caccgacatg tggatggcat acaacatggc cttcatctac acgatggcga 420 gtcttgttac agacgatgtg gcaacacgtg ttgcacgccg agacgtgaca aacttcttca 480 gcccccaaga ctgcatcaac tttcttcgct tcacacagcc gcaggtaggt gcttcccagt 540 tctctgtgtg tatcccactt ggaagaacgc cacactgctg tgctgctgca agaccatgca 600 tgtaggcagc accagtacac ggcaccggga cacttgtccc cacacacttt gtccacatgt 660 tgcccggggt gtgtatgcag cggcagagcg atagaagaag tgttgaatgc acaagccgtg 720 ggacttcggc ggatagaggg tgacaccaca ctgctttgct ccttttttct tcgttccaga 780 tcatgcttat gctggatctt ctcttgatcc ctgcgttcat ccgaaccgac tgtgggtttg 840 ccgtgagtgg gcgagaggct ctttgcgtgc tactgtatcg cctggcgttt ccatgccgtc 900 tgaaagacat gcgcttggtt ttcgggttga gcgagtcgtg catcagcgaa acgttcaatt 960 ggatgctgca cttcctcgag ttcaaatggg gctggctgct ctccctcgac gtggagcgac 1020 tgaagccgag gttggtggag ttcgccgaag ccatctacaa cgcggattgc cctctcacac 1080 actgctgggg cttcatcgac ggaaccgtcc gcggcattgc gaggtgtgtg taataattat 1140 tgccgctttt caatggtcta taggagttaa agcggggtgg gcacaccggc agtagactat 1200 tatgcagaga aaccgattcg ccgactctca cgaacaaagt gaggttcaat tttgtgatgt 1260 acccaggcaa cagtatgtcg gcccgttctc cgtacggttc aaatggagcg actgctgaat 1320 ccccccagct tttcatcatg tcgccggatt tgcatcggcc aaacgcatgt tgtgtcggtg 1380 ctttttgttc ttgtactctt cgtaggcccg tgcgcttcca acgatggtac tacaacggcc 1440 acaagaggaa gcatgccatc aagtttcaag gcgtgattac ccctgatgga ctcttcgtcg 1500 acatgtgggg ccctgtgctt ggcacacgtc atgacagtta cttgcttgcg cagtctggac 1560 tgatgcagaa gctggcaaca cactctaaca gcccttctgg ccacccgtac tgcctgtatg 1620 gagacccggc atacggttta agcgaccatc tcgcctgccc ttttagtgcc tcatcccacg 1680 gtccacttac gcccgatatg gccgacttca accagcgtat gagccactgc agggtggccg 1740 tggagtgggg cttcaaggag atgacgagca agtggacgtt tgtagacatg aagccgcagc 1800 agaagtacct gttgagcccg gtaggcaagc agtacctagt ggctaccctg ctctccaaca 1860 tacactcttg cctcaacgga ggcaaccaga tttcgcagtt ctttgacgtg cagccgccca 1920 ccctccagga atacctcaag gtgtaagtcg tatagactgt gacgtgtttc agacttaaaa 1980 cggtgaacgc atctagtgat tgatggagaa acgcgagcat gccctgtcga gatactcgcg 2040 cgacgaggtg tttgcactgg gcataaaaag agcagggtgg aaattgtggg ttaaatgcct 2100 gtgatttgcg ccatggttga gcttcgccaa caaatgccac gacccagtag attgaacgac 2160 cggggcgttc tggtgtggta gcattagcaa gtcctttggt gtgtggttgt atgtttgtgg 2220 gaaaatcagg agctctagag agagccggga gggcccctag tggagggggt tcagagaagt 2280 acctgaaccc gttttaactt cgtttttttt acgccctctt aactgatcgt ttcaatatac 2340 tgaaaagagg gtagtgcagg caagttggta gtgcagggtt tccgagggaa tcacttcaac 2400 gtctgcaagc ctaccactca acaagccttg catgagcctg ggagatgcgg ccatcatgtc 2460 gcggccgcag taaaggtgca catggagata gctagtgcgg ctatagaatt tgttctcact 2520 ctcgctctct accacaccct ctcgattctc tacagctcca tggtacaaac ctcgaaacag 2580 acagtcaagg ttcctggccg gcggcgagta gcgtcgacca gacacctgga cccacaaggg 2640 ttgaaggcct ccagttgatt agcaacacac gagatacaca cgtcgaatcc ctgcggctct 2700 ctacggtagg aaacgactat gcagaaacag caacaagggc tccccttcgc tacaacgtcg 2760 gcgtcttaga atgcaaagta aaacaccacc cccatagccg cctacaacct tgacgcgaaa 2820 cagttaaaca caaacatgta tttggcggca ggaagacgtg cacgtcgcaa acgaagcaac 2880 tttcatcgaa cccccccccc cccccctccc gttttctcgc accgcaatcg cacggggcgg 2940 catacctttt cgacacccaa caaatgaaaa aaaaagcact gcagccgcca cgccgccagc 3000 aatgcgacaa gtatcctccc ttgaaaacca aagctacgaa aaataaaaac actgcagccg 3060 ccacgccgcc aacaatgcag caagtattcc cccttgaaaa caaagctacg aaaaaaaagt 3120 aagggactgc ggccgccacg ccgccaacag tgcaacaagc acggacgccc cccctccatt 3180 gaaaaacaga gctacgacaa gactaaacaa aacactgcag ccgccacgcc gccagcaatg 3240 caacaagcac ggacgccccc aactcccttg aaaaccaaag ctacgaaaaa aaaagcaagg 3300 gactgcagcc gtcacgccgc cagaaatgca acgagcactg accccccccc ctcccttcaa 3360 aaacaaagct acgaaaaagc aaaacaaaaa acactgcagt cgccacgccg ccaacaatgc 3420 aacaagcatg gacaccccct cctccctcga aaaacaaagc tacgacaaaa aaaaaacact 3480 gcagctgcca cgccgccagc aatgcagcaa gtatcccccc ttgaaaaaca aagctacgaa 3540 aaaaaaagca agggattgca gcggccacgc cgccaacagt gcaacaagca cggacgcccc 3600 caactccctt gaaaaccaaa gctacgaaaa aaaaagcaag ggactgcagc cgtcacgccg 3660 ccagaaatgc aacgagcacg gacacccccc cctcccttca aaaacaaagc tacgaaaaag 3720 caaaacaaaa aacactgcag tcgccacgcc gccaacaatg caacaagcat ggacaccccc 3780 tcctccctcg aaaaacaaag ctacgacaaa aaaaaacaag actgcagccg ccacgccgcc 3840 agaaatgcag caagtatccc cccttgaaaa acaaagctac gaaaaaaaaa gcaagggagt 3900 gcagcggtca cgtcgccaac agtgcaacaa gcacggacgc ccccaactcc cttgaaaaac 3960 agagctacga acaaaaaagc aagggactgc agccgtcacg ccgccagaaa tgcaacgagc 4020 acggacaccc ccccctccct tcaaaaacaa agctacgaaa aagcaaaaca aaaaacactg 4080 cagtcgccac gccgccaaca gtgcaacaag cacggacgcc cccccccccc tcccccaatg 4140 ggcgtatgga actaaaggaa tactatatgc gtcaccccgc gcaacattgt tttcttgtgc 4200 gtggtaccaa aaaaacgttc gaagggctcc aatggctacg gtttcttact ctctgccacg 4260 gccagctgca gcttcaatcg catcatttcc aactcgaatt tctgggccct ttccttgtcc 4320 gccttttctt cggcacgctt agcggcctca gccgcctccc gcttatccct gtcctcccgt 4380 tcctcccgtc gctcatcggc acgcatatct ctctcgtgct tgcgatccag ctgcctttca 4440 tcgcgctccc gctggaatcg gtcctccgcc ctcttctcgc tcctgattgc cgcagcgtct 4500 tccctggccg ccctccgaac ctcgtttttc tcggcattgt ggatcgagcg ctcaatcatc 4560 ctattttttg gacacaaaaa aaaagacaac aagccacctt ttgaatgcat tgctcgtgca 4620 gacgatattg acgacacaac cgggcacgag gaaatagaca agcaagaact aaaccacaac 4680 gaggttgggt ataccttgcc tactgataca ggtgaggttg ggtatacctt cactttgcag 4740 gagacaacac gaatataagg tactccatga cacacaaacc tggaacctac aatcgtttcg 4800 acacgttttg tgaagcaacc caaaaagtat aaaatcagta cgctcacctg ttcatgcccg 4860 tctcctcctt cttgctggtg cttgtgcggg tcttcctacc gctcttgccc gtacgcttgg 4920 cttgcttgtc gggaggtgca tcgtcgtcgc cggaatcgcc gtcgtcgtca gcgtcgccgc 4980 cgccgccgcc accgccggcg aagtccagca gtgtgtggct gccgtcgaaa accagtctag 5040 acgccagagc cctcgtcagc ccatcaaaga tctcgtccga cggttcttcc agaactggcc 5100 acccaaggcg gtacctctcg gcatggggaa ggactctaaa cgcgggatag tcttgattgt 5160 agtggacaaa aagtgcgtgc gtgagatttc cgcgcctgtc tagtccagga gcttttgacg 5220 tatctacggg gtccatgccg taggcgtctt cgtcagctgc aacgatgtct ctcacaaatc 5280 tatccaccga tttcccatcc cttagtccca tgaggtagcc cgcaatcaca ctctccatca 5340 tcctcgttgc gacatcatgt gggatttggt caggcctaaa tccggcgttg aggaaaaggt 5400 cggcctgctc acgcgtaacg ccaactttcg atgcaaggat ctccatcgtc ggcgcgcgta 5460 gcaggttggc aagggggctt ccaagcgggg gggtaagtgt gaccccaccc gcggtagccg 5520 ggctggatcg gccgctaccg ctaccgctac cgctaccacc accactaccg aaaccgacca 5580 cgccgccgat gttagcgggg ctcgatcggc cgctcccact accagacgga gtgaacccag 5640 gcatgcgtcc cctgctgtca ataacgccac tcatccggcg ctcgtcgctg gcgtgagctt 5700 ctccgaagga tgtcgccgct gctcccggtc cgcaccggct attgcccatg tcaatggctg 5760 attgcccaag caagttgtga cccgccttcc tcgccttttc ctgctgactg tctgccctct 5820 ccccggtcct ggcgtctagc acggattgca caagcttctc ctgcgaaaaa ggagcaaaat 5880 tggcagacat gaaaaagcgc ggcaagacca gcagcaactg tcatgtctcc agttactcca 5940 tttgcacatt cccgcgtttg ctacagacct tgcttgactt ctagcatgtt tttcgcgaac 6000 gcatacagct gaacgcgctc gtcatacagg cagcgcgcta ccccgaatga tcgttgtcaa 6060 caaaacgctg atacgacgac tataggtgta tcacagcagg tgaacaaatc cgcgtaatca 6120 aaccgattag cttctcacca tctcggcttc gtcgccctcg aggtcgtcgg cggaggtatt 6180 ccctgctccg gatgcttttg ccgcctcctc gttcttcttc gcttgagcgc gaatgtgcga 6240 gtcgaagcgc gacttcaaat gcttgaccgt cttgctgccg aacactctca catatggctc 6300 cttgctcaag tcctcgacga ctaatgccca cctgtcttca accctgtcgg tcaggccagc 6360 cactcgccag gtcttgtgct tgatagctgc cgcgacagag aatagtgtta acaagcacga 6420 ataatatgcg aatttgttgg tgaagagccc acggggccgg tgtctttttc gggagagata 6480 cctagcacct ctcctaacaa acctacccag acggatgcaa atgtggtaag tggaatagca 6540 ggcacatttg ggcgcacggg tggaatagaa ctttggatgt tgtaacgttt tcgccacacc 6600 ttcctgtgcc acgccaacca ctgctgtaca tacctccaga gctgcccgct cgttacacta 6660 ctgtacggga acagcagtcc ggtggtaaga tacacaattc ctgttctatt cctgttctaa 6720 gccccccatt caaacaagta catcgggtcc actgctgtgc aggagtagag acgcaggcgg 6780 gagggagcct agccatcttg gcaccggctg ttgcggcgaa acaggaaatt tgaaatttga 6840 aaaaaagtag gacaccgatc atcgacaaca tgcgtgtggt cttccttgct tctgctggtg 6900 accgtcagat gttcttcgca accgcgctct gcttactcaa ggcatgttct ctccacatcg 6960 ccttcaactg ccgccctaca cacaacacca aacgcgccgc ggaacatcat gatctcgtac 7020 agctagactg gtgtggtact cccgcagcaa tccacacttc aacaaaagca tgtgcgccgt 7080 gctgtgttat ccaccaacaa cagcccacta cctaacccta agccgagtct tcggaccgaa 7140 tgcacgcagg tcctacttac aaagcacgga tgctatgtag gaactctacc acaataggtg 7200 tcaccatgat gatgagcgct catgatgcat ggtgttcggt ggtaacgtgt gcatatatgt 7260 acgcgccagc tgtgcacgca tagtctagtc tacaaccaat cgtcttccct ccatttgtct 7320 gatggtcgca caaactcacc gtgtttcatc agcgtcaagt ccgaccacat gctccacttc 7380 ggggagactc tcttcttctt cttgcccgcg gaagccgcac tcgatgggtt ggccacagct 7440 accacctcag cgtcggagtc ctcctcctgc accggagtct cttctccacc caagctcatc 7500 accttttgcg cgtgcccatc gcctgccgcc ctgaaggacg tgcgcgaaga gttatctgcc 7560 tccctacgcg ccgcggtctg gcgggaagcc tcaagggcca agaccttttc cgtgggggtg 7620 accaccctcg agctctgacg ggaagccatg cttgcttgtg tatgctctct aaaatctgaa 7680 gggtgatttt cgatttagga aaaggcggtg ccgggccgct gttttcctaa atctgagagc 7740 cccctttcag atttaggagc tcgatgttcc cccgctttga ggaacgttcc cagaaattga 7800 cccttccacc taaatcgaga acttgcatct aaatcgaaaa gcgtcaaaac gtgttccgaa 7860 actcccc 7867 // ID Gypsy-10_PSo-LTR repbase; DNA; PLN; 313 BP. XX AC AAQY01000273; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PSo_; KW Gypsy-10_PSo-I; Gypsy-10_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-313 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000273; Positions 70454 70142. XX SQ Sequence 313 BP; 83 A; 80 C; 73 G; 77 T; 0 other; tgtaatgggc cccagttaca taactaggta gattgacagt acataaagta gttaagtccg 60 tacacggcta gcgtgtactg acggtcatcg tgattggctg aattggagga gccagacccc 120 atttcagcca atccggcgtt gacctgcatt tcagtggctc acatgagacc aggggtagcc 180 gccctggtcc taacataaaa cagagttgat tttacccaag actgactgct tggtctcact 240 aaatccgagt cttaactaag cttcctcacc gctacgtgta agctagtaac ggacacacac 300 ctggtccgtt aca 313 // ID ARET1I repbase; DNA; PLN; 5820 BP. XX AC AB003364; XX DT 15-JAN-1999 (Rel. 4, Created) DT 15-JAN-1999 (Rel. 4, Last updated, Version 1) XX DE Internal part of Ty3/gypsy-type retrotransposon ARET1. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ARET1I; KW ARET1LTR; Gypsy superfamily; LTR retrotransposon ARET1; gag; KW internal part; pol; internal portion. XX OS Adiantum capillus-veneris OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Polypodiopsida; Polypodiales; Pteridaceae; OC Adiantum. XX RN [1] RP 1-5820 RA Nozue K.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (24-APR-1997). Kazunari RL Nozue, Tokyo Metropolitan University, Department of Biology; 1-1 RL Minami-ohsawa, Hachiohji, Tokyo 192-03, Japan RL (E-mail:tkanegae@comp.metro-u.ac.jp, Tel:+81-426-77-2564, RL Fax:+81-426-77-2559). XX DR GenBank; AB003364; Positions 3670 9489. XX CC ARET1I is an internal part of ARET1 LTR-retrotransposon. CC Its LTR is designated in RepBase as ARET1LTR. CC Putatively, ARET1 was an active element several millions years CC ago since there is 4% divergence between its LTRs. XX SQ Sequence 5820 BP; 1630 A; 1132 C; 1485 G; 1573 T; 0 other; tggttccatt gccaggatat caatcacttt tccctaaaga gtgagcctgg attgttttgg 60 gtaaagacac agagtgcagg aacgcgggat tacacaatgg ccgacaaggg gaagggcatt 120 atggaagagg gttcctcttc aaaggacagg caggagatcc ctatggtttt cgagattggc 180 gagagcttac gaccaggtca gtctgtacct cctgtcaatg tgaatgtccc tccagtagta 240 tagggcttta tgacttggca acttgaggat gatgcgttca agactcaatt agttgccgcg 300 ggtgaatgtc ttttcgtagc tggtgcagaa tccaatgttt atggagttct tgcaagcgcc 360 accagtgcaa tagcaaaata ggcaacctac gtcgcgtacg gagcttgttg atgctcaagc 420 ccaggtactt catgcggccc aggaggaaag ggaacactcg catgttgcgg agtcagggga 480 tccaaaacag gttcctcctg tgcttgaaca ggtggctaga acgcctgttc cacaggttat 540 gccagttcag cccgccacct tttagagcca gcatgctatt ttgaatggac agtgaactgg 600 ataccaggct atgcactcag tttttccacc acccacggta cattctaggt attttgggga 660 tggatcagtg atccaaagta tggctggtta tgcacttgga agtcagccgt acatgccagg 720 aacagtgttc gggggtatgc aaggcatcat gccaaacccc atgtatggta gtattggcat 780 gcagcaaggt tttcactgca accagggcca gtttggggtg ccacagggtc attttggcat 840 ggctggtttt tctggacagc agccagatat cgcacctctt ttgcaaaatg tgaatggcga 900 agatgtgccg atcatgccta ttacagtgcc catgttgcag accatccctt atgataactt 960 gggggcacta gagaagccga aggcttacaa agaagatggt gcagctgtaa agttcagtac 1020 cttcagtggt tttgaggata agacgaaggc tcttaccttt ctccagcagt ttgatacagc 1080 ttatgcgaga gggaatttaa cagaggcctt gaaggtcagg aaagctgcca ctttcttaaa 1140 ggacaatgcg cttacatggt ggacgacatt gttaatgcaa ggacaggcac ccgccacttg 1200 ggtttacttc aagcaaatgt ttgcatctgc ttggctgtca aatgaatttg aagccgacgt 1260 catgacagat tggtaccagc ttacttcagc ttcgtgcaag agcttgctgg agtacattag 1320 gaggttttgt aaagcgttac tctcagtgac ctcctacaga tttgtgccat tgacagagca 1380 gatagagaag tactgttgtg ggttgcctaa agggcttcgc gattactgta caaagaacag 1440 agtggctacc ctcacttagc ttatggaagt tgcgaacatt ggtcttgcct tgttgaaagg 1500 agaggatagt ggatttccga gcagcgacaa aggagggcag taaaagaaaa attcagcaaa 1560 gaagcccttt gtgaaaacgg cccctgatgc gtcacagggg tcagaaaagg ccaccaaaga 1620 caaggattca gacgaaactt ctggagcgca agcaaagaaa cagaaaagga agccttttgt 1680 gctcaagtcg ctcgagtaaa agaaggtcct aatggctgag aacaaatgct ttatatgcga 1740 gcagcctggt cacttttcta tcatttgtcc acaaaggaaa agaccagccg actcaaagga 1800 taaagaagac cagaaaggca agaagcctaa acccacggca agtttagtgc cagacatggt 1860 ggatgacagg cccaacacag atgccattga gttatgcagg gcatggggta aagttaggga 1920 tcagacggca ctcatcttct ttgatccagg tgccaaagcc aacttcatct caccagagtt 1980 agctatgaag ctgggcgtca gagctgaaga gatgggtaca caacagaggc agggttggca 2040 tgtcctggcc actcagagtg tgttactccc atcattggaa aactgcgtct gtatattcag 2100 tcgtatgtgg acacagaaga gttttacatc atgctgctgg aaggttgtga cgccttgttg 2160 gggttcccat ggatgttccg agtggatgga gtcttggatg cctacaacaa aaagatcact 2220 gtacagcata gggacaaaat tcacatcttg gatgtaaagc ttaaaggaga gtcagtccct 2280 attgtatctg cttctgctat cacttttgta ataaagaatc atctttctgt gtacttgatt 2340 tttgcacgtc atgtctcaga aagtgatcaa tcaaatttat ctgtgttaga taaagaaggg 2400 tcaacatttt tgcaaaattt tagtgactgt ttttttgatt cattaccgcc gcaattgccg 2460 ccagagagac ctgaggacca tcggatagat ttggtgccag ggtgtagccc accaaataga 2520 cctccctaca gggttagtgc ggcacaacag aaagagatta tagaccaggt tgaggttcag 2580 cctagttttt cacctttttt gctccccagt gctcctagtg cagaagaagg atggctcatg 2640 gcgcatgttt tattgattac cgtttgttga ataagattac catcaagaat aggtttccta 2700 ttcctagaat tgatgatatt ctcaatcgtt tagagggtgc tgcaattttt agcatgatag 2760 accttcagag tgggtaccat cagattcata taaggccaga ggatgtgcac aagactgctt 2820 ttagaacggc atttggtctt tatgagtttc tagtgatgcc gtttgggcta aaaaatgctc 2880 ctgcaacgtt caacagaatg atggaccgga ttttccgctc acatcaatag tttgttggga 2940 cgttcttcga tgacaggata gtgtattcga agaatgaaga ggagcatagg cgtcacttga 3000 ccattgtgtt cgaagagtgc gcaatcacac gggttacttg tcaatcctaa gaaaagtgaa 3060 ttcttcctcg aagagatcca ctttcttggc cacatagttt caaaggatgg tgttagaatg 3120 gatccagcaa aggtcgaagc tatcaagaca tggccagact tgaagactgt gcacgatgtt 3180 aaaagcttct tggggttgtg ttcctactat agaaggttta ttagaaattt tgcagagata 3240 gcatcgcctc ttcatgcttt gcaaaagaaa aggtcacttt cagattgacc caaaaagaga 3300 ttttagcttt tagtctctta aaggaaaagt tgacttcaga tccagttatt gttttgccgg 3360 atctcaggaa gtcatttgtg gtccaatgtg acgcgtgttg cagtagtgct aatgcaagat 3420 ggacgggtag tagcttatga aagccgaatt ttgcaagggc cagagaggac tatgcaagct 3480 atgagaaaga gctcttggcc gtgattcatg cgctttctag ctggaagcac tacctcttag 3540 gtgctgattt tgttgtccaa acagatcatc agaccttgcg atacttcttg acacagtcaa 3600 agttatccga aaagcatatg cgatggacaa tcattctttc catgttccac ttccagatta 3660 ttcatgtgga aggcaagaag aatgttgtgg ctggtgcgtt atcaagaaag ccacaatttt 3720 agctatgtca attccttttc atcatgagtt agatgacatg acggaacaat atactgctga 3780 tgaagatttt gcaaggatct ttgaacagtt acaagagggg caacatcacg agcactacct 3840 cctcagagat ggttttatga tgatgcatgg tagactttgt gtcactaggc cactgcgaca 3900 taaggtcatg gaagagagtc acgtcccacc gtatgcaggg catcgtggca ttgatgcaac 3960 agttaaagcg gtagagacat tcttctattg gcctaccttg aggagagatg tggatgcctt 4020 tatgtgagca tgcatagttt gccaaaaggt caagtttgac aggcaaaagg caccagggtt 4080 gttacaacca ctgccgattc cggataagcc atggcaaagc attgctatgg actttatctt 4140 tgatcttcca agaacgccag cagggaatga tggtatatgg accattatct gcaggttcag 4200 caagcaggct cattttatcc ctgtcaggaa gaagataaaa tctgatcaga tggcacgctt 4260 gttcatgtac aatgtgttga agtaccatgg tatgccacaa tcgattatca gtgatcgtga 4320 tcctcgcatg accagtttgt tctggagagg attgtttgag aacatgggca ccacgctcaa 4380 gttctcgtct tcgtttcatc cacaaactga tggacagtca aaagaggcta attctattgt 4440 cttagatctg ctgaaatgct atgtgtcaga taataaggcc aagtgggaat agtgtttgcc 4500 tatgcttgag tatgcgtaca ataatacggt gcattcgtct actggcaaag cacttttgag 4560 attgttgaag gcggcaaaaa ggttcctccc attctgcata caaaggacaa gatctttgag 4620 gcagatcgat atgttgagaa catggatgag atgtataaga agattaaagt tgccttggag 4680 aagactcggg caaagcagaa aaaggctgct gatcgtcacc gttgtgaatt gttgttatca 4740 cgtggtgatt gggttctgtg aaggttcgaa aaggcaaggt taaagaagat gaagggcaag 4800 gaacggttgt ttcctaagct caacatgcgt tactatgggc ctttttaagt gcttgacaag 4860 atcagcgatg tggcttacag gctgaaattg cctgatgcgt ggaagattca taatgcgttt 4920 cacgtgagtc ttctaagacc cttcgtaggt gatgtgctag aagatatgcc agatgagcat 4980 cagcaagaag ttgaggaact tgatgagatc ttggtacctg agcaagtttt ggcacataag 5040 gacagaaaag ttataggaca agttgcaaga cgctatttgg tgaagttcaa gaactatccg 5100 cctatggatg caaagtggat ggaagagcat gaagtgtcag agtcaccaaa tgtattgcag 5160 ctttaccttg aagcctttgt gttacagcct acttatgccc caatccaacg tgtgcaaagg 5220 aggggtaatg atagagctag tacatcaaat gtacatatga attcagtgta atagatggaa 5280 atgacaaaag tatgaaggcc tcattaagtc atttgtatct atgtgttatg accttttttg 5340 cggatacatg cgatgataaa agagtgttga tagcacaaga tcatcagtgg catgtattta 5400 tggtatgcaa tcgaggacgt ttgcgatttc aagagggggg tatgtcacgg ggacgtggca 5460 acttttaact atgtcacgag gacgtggcaa cttttaacta tgtcacgagg acgtggcaac 5520 tgctaacttt agttgttggt ttctttccaa ggggttttgt tttatttttg agaccctctt 5580 cttgaagtag caaacagtcg gacattgtat ggccaatgtg aactgtagtt tcacccgtag 5640 atgggtagtg gtcggcactg gaattcgtat ggtaagagga tgtctaggct caaagcaaga 5700 tcatataggt cccctcccgt cgcacttagc aagctggtgg atactaggaa gtgaactcaa 5760 taaaggccta aagtcaaggt gtgactacca acagaaaagt atccgacagt tgggccacat 5820 // ID Gypsy8-LTR_VC repbase; DNA; PLN; 323 BP. XX AC scaffold_27; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8-VC; KW Gypsy8-I_VC; Gypsy8-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-323 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 136-136 (2008). XX DR Genome; scaffold_27; Positions 680801 680479. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 323 BP; 93 A; 74 C; 71 G; 85 T; 0 other; tgttgtagcg cgatagctac acaggaatga tgagcttatc acgaaatatg cgaatcaatt 60 atgatcatga aatcttctga aaactgacct ggctgtcaag aatcgtttgt aagaattcac 120 cggaactgaa catcatgaat ctgtacgaca gccttaccga aatccataaa tctactgaaa 180 tcgtctttgc tcacagaacg gacgtgggtt cgtttagaat tcatattcta ctcacgttcg 240 gagcgcggtc ttataccgtg gtcggggcag tgccggcctg agacatactt cacgggccag 300 tagcactgca tttcactaca aca 323 // ID FOSBURY repbase; DNA; PLN; 253 BP. XX AC U15189; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Magnaporthe grisea Fosbury retrotransposon, 5' LTR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; FOSBURY; KW Gypsy group; LTR; Retrotransposon Fosbury. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-253 RA Shull V. and Hamer E.J.; RT "Genetic differentiation in the rice blast fungus revealed by the RT distribution of the Fosbury retrotransposon."; RL Fungal Genet Biol 20(1), 59-69 (1996). XX RN [2] RP 1-253 RA Shull V.; RT "Mitotic Instability in Magnaporthe grisea can be due to the RT Transposition of fosbury, a Novel Rice Pathogen-Specific Gypsy RT Class Retrotransposon."; RL Thesis (1994) Biological Sciences, Purdue University. XX RN [3] RP 1-253 RA Shull V.; RT "FOSBURY."; RL Direct Submission to Genbank (28-SEP-1994)Verel Shull, Biological RL Sciences, Purdue University, West Lafayette, IN 47907, USA. XX DR GenBank; U15189; Positions 338 590. XX CC This is a LTR sequence from Gypsy group retrotransposon Fosbury. CC 5 bp terminal inverted repeats. XX SQ Sequence 253 BP; 51 A; 86 C; 60 G; 56 T; 0 other; tgtcacagac ctgaaggaca gccactgggc tgtcgcttag tcatgacccc tgtcacgtga 60 aggcgcgagg gccgagcgcc tcgcgcgcgt atatctacgc gaaatctctg cagtctccga 120 tatgtagctc ctcgagctac gtcttcgtcg acaaccacct gctacactgt acctggaaga 180 ctagatagcc aatatactct gtcctgttac ctgatcgccc gcacctacct gtccgccctg 240 cctgcccgtg aca 253 // ID Gypsy-22_PR-I repbase; DNA; PLN; 5084 BP. XX AC AAQX01000202; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PR_; KW Gypsy-22_PR-LTR; Gypsy-22_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5084 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000202; Positions 71181 66098. XX CC Positions [3846-4331] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 66..1103 FT /product="Gypsy-22_PR-I_1p" FT /translation="MEPSEDDAVVQPPSQGRNQTDIDELAARTAAMRLESA FT ASPAPQSPGLRLQIPNPFDPADGSEADEAMPTVSPVSGGQRVAAAPALRQP FT PRFAGRTMQDRRDFMRHYETYLTAINALQTQWGGAFAMPVGACIESKTKRM FT VARYEFNLAPHLVGEEQWIEYFKQANAPSHVDYASVDEAMKKLRMKTTWPE FT PESKMMSLQADLETILYQFNLTEVAFEHEQRRIVKYLANALAPPSFKSVIM FT TKLMLQENKRYKNEVVPFCSWVTLLVREFMTWERAAQTASSPDPTSQTQQP FT RGSGRGHQGGRSAGAGRGGRGGQSGHNRPDGGREGRNHQDGVGSGPPPPPP FT WLL" FT CDS 2775..4907 FT /product="Gypsy-22_PR-I_2p" FT /translation="MQQSIPEYTRISAVLYDTLERAAKVSGSRKKKMLAKV FT NLVDVAWGAQETAGFENVRQALLRMVPLAHPSPSSEVCLYSDACPDFWGAV FT VTQLESNEVQLPLEEQHHRPLAFLSGRFVGAAVRWPTIEKDAFAIIESTRR FT LEYLLLRPKGFRLFTDHRNLVYIFDPFATDSAMARYQADKLQRWAMSLLAF FT RYVIKHVPEKINAWGDLLCRWGAGPALKQERTSRRVARLAVVQRVSPLEDP FT EFVWPAETEIRALQQVARDDNSDLQGAQWSEQRQLLLTAAGQVWIPGDAVD FT MQQRLCVVAHAGASGHRGSRATTQALETVFYWRTMAKDVAEFVAGCLHCMA FT TASGRIPRPFGETLKATKPNEVLHFDYLTMVEGEGAVKCILVLKDVMSGYV FT ELIACLQANSDNAYHGLQDWFKRFGVVRQWVSDQGAHFRNQVVESLQRALG FT AHNHFTTSYTPWANGTVEVVNREVLKSIKALLRERKLPVRDWPAVLPVVQS FT ALNGMPDDRLGGKSPLTAFTALPGGAQLQHILHPRDPADTTVQWVNQEILA FT HLSKVRAALDGMHAEMVDASDKRRRAARARHERRQGVKLHKFSEGDFVLAA FT TATGRSGHKLALVWRGPKKLVRALNDYTFEVQDIVAPFEVSIRHASGLQLY FT RDAARGSVEELQEQAIFGEGGQLVEALQACRLSPDTHRWEILVKWFGLDEI FT EASWEPAEVIV" XX SQ Sequence 5084 BP; 1098 A; 1364 C; 1579 G; 1043 T; 0 other; caatacatca aagttaattt agttcgatcg cagattcgaa ctctgcgccg gtccagcgcg 60 tgaacatgga accaagcgaa gatgacgccg tggttcaacc accctcgcag ggtcgtaatc 120 agacggacat cgacgagctc gcagcccgca cggcagcgat gcggttggag agtgccgcgt 180 cgccggcgcc gcagtctccc ggcctgaggc ttcagatccc aaaccccttc gatccagcag 240 atggctccga ggccgacgag gccatgccga cggtcagccc cgtgtccggt ggacagcgtg 300 tggctgcagc accggcgctc cggcagcccc cgcggttcgc aggcaggaca atgcaagatc 360 gaagagactt catgcgtcat tacgagacgt atctgaccgc aattaacgcc ctccagacgc 420 agtggggtgg cgccttcgca atgcccgtcg gtgcgtgcat cgagtcgaag acgaagcgca 480 tggtggcgcg ttacgaattc aacctcgctc ctcatctcgt cggagaagaa cagtggattg 540 agtactttaa gcaggcgaat gcgccctccc acgtggacta cgcttcggtt gatgaagcga 600 tgaagaagct tcgcatgaag actacgtggc ccgagccgga gagcaaaatg atgagcctcc 660 aggcggacct ggagacgatc ctgtaccagt ttaacttgac tgaagtggcc tttgagcatg 720 agcagcgtcg tatcgtgaag tacttggcga acgcgctggc gccgccgagc ttcaagtcgg 780 taattatgac caagctgatg ctccaagaga acaaaaggta caagaatgaa gtggtaccat 840 tctgctcctg ggtgacgctg ctcgtgcggg agtttatgac ttgggagcgc gctgcccaaa 900 ccgcgtcatc accggacccg acgtcgcaaa cacagcaacc tcgtggctcc ggtcggggtc 960 atcagggtgg acgaagtgct ggcgctggcc gaggcgggcg tggaggtcag agcggacaca 1020 atcggcctga tggtggccgc gaaggtcgca atcaccaaga tggagttggg tcaggacccc 1080 cccccccccc cccgtggctc ctgtagcagc gggcaacgac ccgagaccca cacgaggaac 1140 ttgtctgaag tgtaactcgg ctgaccacca agtgcgtggc tgtccgagga gccagcccgg 1200 tgaagctgcg catctgctga aggcaaggcg cgaacagcgg gacgctgcac gaaacatggg 1260 catttgtatg ttcgatgtcg ttgacgccga tgggcattct cctaaggcga atggtgttaa 1320 tgtggatcat ggaacagttg agatggtgtt gcagttgttg caatcctctt ggactccggg 1380 gcggatacat ctctggtggg tcgaggtgtg cttgatgccc tcgaacaagc gggcaaatcg 1440 gtatctgtcc gctctgtcga cgaagtgcag ctgaatcccg ttggcggaca gagtattaat 1500 gtgagccgcc aggcgacgtt cggggatgtt gtgatcaccg cctccgccgg gccattgatg 1560 ttgcgcaatt tgacgtgtta cgttgaagag gagaatgact caaaggatct gacggtaggt 1620 cggcctatca tgcacatcct aggttactcg acagataagc tgttggtaaa ggcaagagag 1680 gtgaactcag agtgggagct ttcgccgacc gagttggaaa gtgacaacag aggagaaacg 1740 ccgactttaa gctgttacgc gtgatccacc tgaagtggaa gccgacgcgg acactgttga 1800 acgacataaa atgagaacgg cgctgctaag catgcgcccg acgtcactga acgacgcgat 1860 ccggttcttg gagaaaaagg ttgaggtggc cgagaaaatg gacttaactc tcgatggttg 1920 cgccaaactg cgcgccatcc tgcgtgtgag ggtcgactgt tttcgcgttg aatttggaaa 1980 cgaccctccc gttcgcgttg agcctatgca agtgcgtcta aaggccggtg tgcgtccagt 2040 gagagcgcag cctcgccgtt attctccgaa cgaccgattt cttagaccgc catactgcag 2100 cgctgcttgc gcacgggctc gtgttcaaga atcacagaag caggtgggca tcagcgccga 2160 gaattgttcg caagcgagag caagaaactg accccacggc ggatccgaga atgaccatcg 2220 acaccagaag tgttaacgaa cgtaccgatc cgatgccgtg gccgataccc gtcctggttg 2280 tggtcctggg agagcttgag ggagcccggg tgtacttcgt tctcgactgg ttcaggggct 2340 tttggcaact gcctttacac cccgactcgc aagtgctgta ttcattcgtg acgcatcgcg 2400 gcatctacac tccgactcgt gtgcccatgg gggcaacaga tgcggttgcc tattgtcagg 2460 gggtagtgga gggaatcttt ggagatctgc ttggtgatgg catactggcc tgggtcgaca 2520 acatcctcgg ctacgctgaa agtgaagacg cattgttggt cctacttgat aaggtcctgg 2580 cacgttgcga gtcgtacggc ctaaagcttc acgcaaagaa gtgcgcgttc ttcgccactg 2640 aggtcaagtg gagtgggcgc attatttcgg cgcaaggggt taagcactgc ccagaacggg 2700 tacaaagtct agtggacatg cagttgccac agactggagc ggacttgcag caattccttt 2760 gtggcgccaa ctagatgcag cagagtatcc cggaatacac tcgcatatcg gcggtcctgt 2820 atgacaccct cgagcgtgca gccaaggtca gcggatcaag gaagaagaaa atgctggcta 2880 aggtcaatct cgtagacgtg gcttggggtg cacaggagac tgctggattc gagaacgttc 2940 gtcaggcgct gctgcgcatg gtgcccttag cccacccaag tccatcgagc gaggtctgtt 3000 tatactccga tgcctgtccg gacttctggg gcgcagtggt cacccagctg gagtcgaacg 3060 aggtccagct gccgctggaa gagcagcatc atcggccgct tgcgttcctg agcgggagat 3120 tcgttggagc agcggtgagg tggcccacca ttgaaaagga tgccttcgcc atcattgagt 3180 cgacccgccg gctagaatac ttgctgctga ggccaaaggg gttccgactg ttcactgatc 3240 atcggaatct ggtctacatc ttcgacccct ttgcgacaga cagcgccatg gcacgatacc 3300 aggccgataa gctgcaacgc tgggctatgt ccctcctcgc gtttcggtat gtgataaagc 3360 acgtgcctga aaaaatcaac gcatggggag atctgttgtg ccgctgggga gctgggcctg 3420 cactgaagca ggaacgtact tcaagacgag tcgcccggct tgcggtagtg cagcgcgtct 3480 cacctttaga agaccccgag tttgtttggc ctgcggagac tgagattcgt gcgctccagc 3540 aagtggcccg tgacgacaac tctgatttgc aaggcgctca atggagtgag cagcgccagc 3600 ttctactaac tgctgctggt caggtgtgga tcccagggga tgctgtcgac atgcagcagc 3660 gactctgtgt ggtagcccac gctggggcca gtggccatcg aggttctcga gccacaacgc 3720 aagcgttaga gaccgtgttt tactggcgca ccatggcgaa ggacgtcgcc gagtttgtag 3780 caggctgtct gcactgcatg gctacggcta gcggacgcat tccgcgcccg tttggtgaga 3840 cgttgaaggc gacgaagccg aacgaagtcc tgcacttcga ctacctgacc atggttgaag 3900 gtgaaggcgc cgttaagtgc attctcgtac tgaaggacgt gatgagcggc tatgttgagt 3960 tgatagcgtg ccttcaagcg aactcggaca acgcgtatca cggactacaa gattggttca 4020 aaaggttcgg cgtcgttcga cagtgggtct cggaccaggg ggcccacttc cgcaaccaag 4080 ttgtggagag cctgcagcgt gcgttaggcg cccacaatca cttcacgacc tcgtataccc 4140 catgggcaaa cgggactgta gaggtcgtga accgtgaagt tttgaagagc atcaaggcct 4200 tgttgagaga gcgaaagcta cctgtcaggg actggcctgc ggtactgccc gtggtgcagt 4260 ccgctttgaa cggaatgcca gacgatcgac ttggtggcaa gtcaccgctt acagcgttta 4320 cagcgttacc gggtggcgca cagctgcaac atattcttca cccgcgtgat cccgcagaca 4380 cgaccgtgca gtgggtgaac caggagattc tagctcatct gtcgaaggtt cgagccgccc 4440 tggatgggat gcacgcagaa atggttgacg ccagcgataa gcgtcgccgg gcggcacgtg 4500 cgcgacacga acgccgccaa ggtgtcaaat tgcacaaatt cagtgaaggt gatttcgttc 4560 tggcggcaac agcaactggc cggagcggcc acaagctcgc gttggtttgg cgtggaccca 4620 agaagctggt gcgcgccttg aacgactata ctttcgaggt tcaagatatc gtagcccctt 4680 tcgaggtttc tatccgccat gcatcggggt tgcagctgta ccgcgacgcc gctcgcggca 4740 gcgttgagga gctgcaggag caggccatct tcggtgaagg agggcagctc gttgaggcgc 4800 tccaggcgtg tcgcctcagc cctgacactc atcggtggga aattcttgtg aagtggttcg 4860 ggcttgacga aattgaagcg tcctgggaac cggccgaggt gattgtttga agcgttcgtc 4920 acagcgtcgc cgggggaccc gcagctggcg cgcctcgtta cggcattgga atcaactgac 4980 cgtcagcgtc gggtgccagc tactcgacgc ctgccccacc gtcgtgccgt tcgcacacgt 5040 ccggtcgctc acccgcagta tccttctcag attggagggg gaag 5084 // ID Gypsy-48_PIT-LTR repbase; DNA; PLN; 261 BP. XX AC AATU01003360; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_PIT_; KW Gypsy-48_PIT-I; Gypsy-48_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-261 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003360; Positions 22901 22641. XX SQ Sequence 261 BP; 72 A; 54 C; 73 G; 62 T; 0 other; tgtagtggtt ggtgcattgg tgaccaagcc ttgtccactg cactgggccg cacagaacgt 60 gcggccaagc tggcatagga agtagtaagg tatagtcgag agctataagg tatagtcgag 120 gacgtgacat cacgtaccga taagccgtag tgataagttt agtcagggag tttgagtttt 180 acctcaaagc aagcaataga tcaaggctaa aaggaagcgc cagcttccct catgtgtgtt 240 cgagtttcga tacccactac a 261 // ID Gypsy-2_PR-I repbase; DNA; PLN; 4432 BP. XX AC AAQX01000382; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PR_; KW Gypsy-2_PR-LTR; Gypsy-2_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4432 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000382; Positions 12751 8320. XX CC Positions [3272-3778] - Integrase core CC 'CGTGG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1220..4411 FT /product="Gypsy-2_PR-I_1p" FT /translation="MSTSCSSNLQGGGESTVAEADHDDITASDPELGFSDE FT TDEIHTVVSKLVDDAVDAGFDSSLTGDLRALVHEYEDVWRLKIGADEPAKV FT EPMRVALRPDSEPYRSGVRKHPDMQRAFLRTYVQEPLDNGLIIRNNNSRWA FT CAALPVRKSSGDGYRITVDYRPVNKMTMPLAGPTPNLAAVTQSVRGAYGFG FT QFDLFKGFWQMPLAAESQELFSFVTEDGVFTPLRVPQGASDSAMFFQLQMH FT DCFRSMLYDSVLVWIDDVLLFAKSPSEFIEKLRLFFQILRQRNLKLNAKTC FT TLFAHRVVWCGKVVDGEGLEHDSARLSALREMPLPPTAAALQSFLCAVNWL FT RDSMVDYARTVGPLQDKLEKVMAARGRRKAQLAGVDLTWTKEDEVAFQLVI FT ELLGMSTNQYFADSEAQVGLFSDASARGWSIILTQVAEWNDDLPVTGQAQQ FT MMVCRGGLFKSAQVNWSTVEQEAYPIVRACGDLAYLLEREQGVRIYCDHAN FT LIKIFAPGKEVKQHVRGKLQCWALKMIGIRNEIEHIKGEDNLWADIVSRWG FT QPAPAPSESPVAFKRVTTRSVQPLSSLRPLQDAAFQWPSLDAVRQKQQRYR FT NAAPVAADDDGVFRHDGKIWIPGDAKELLQRILIVAHCGQQGHRGADVMLS FT SVQQRFSIARLREVVSRFARKCLLCKHVKGGRLIQRAWCPTATATRRNQCL FT HIDYLSLGESYGDSAYVLVLKDELTHYCELSASDAPTSSVATEAVHDWFKR FT FGLPEEWVSDNGSHFKAQVMKELAGRLHATQKFVPVHTPWINGTVERVNRD FT ILQVLRVMLLELQLDTGNWLYLLPIIQANLNHAAVESLGRHAPVELFAGLP FT AASPLDCVVVPDGRTPRVLSLDLERLSEQLDNLHAHFREMHSEVVERKERK FT RLTNMARSKGSTRNFEPGDYVLWLRVDKRLQSSKLLVRWVGPFRVTEALAN FT SFMVEHLLTKDVYEVHGSRLKHYCDADLDVTEGLREHVANQGIVLGVRAIT FT EHRYNDEAKEWQLFVAWRGLEDNENSWEPFDSVYSDVPTIVQRYIADGGHT FT ELEPMLH" XX SQ Sequence 4432 BP; 1017 A; 1045 C; 1381 G; 989 T; 0 other; ttgttatcaa tagctattaa gacgacgatg gcaggcttcg gtgcggtgga tcaagatggg 60 gacgttgaga tgagtgttcc tcaaccgatt tttgagttta tcaaggcacc caagctggca 120 gtgtggagcc aaccagcgtt ggtttggttc ctgcgcgatc gtcgccagta cttgaacaag 180 gtccgggaaa gatgcatggt cacaggcgaa gatcaagaca acgtgacttt cagcatcaag 240 agttcggtgg aacctcggat ccttgagcat ctcgctcact acgtgctacg atagcctata 300 actgaggtga cggaggacgc actgcgaacg gggatggaac ggaaggctga ctccatgatg 360 aatgatcatg tgccggatgt ggcaaaactg ttcgccgaag agttgaagat ggacttacgc 420 gagcccaaca ttgaggcccg ggtgtctaag tacttcatgg atttcgacag gtggtcgagg 480 atcagggtct agcgacatgg gtgggtcgag gcgtattgca ggtcgccagc gatgcaaggt 540 gcttgtggcc aacctgctac ctgacgtgtt aaggatcgat gtggagcggc tgataagcat 600 gactcatcgc gacgcaaagg tggacgacgt ccaactgtac gatttgattg ttgaacgagc 660 cgttcgtcaa cagcaccatc acctcatgca ggcggagacg aaaacgtcgg tgcaagccag 720 gagcaaaact ggtgagacga agcagttcaa agaaaggccg aaggaggcga ccaagagcga 780 tacaaagccg aaagccaagg agtatacggt acgaccgccg aaggacggtt gttttatctg 840 caagggccct catcgcgcgt ttgagtgccc aactggcacg agtgagcaga aagaggatgc 900 gcggcggacg ctggcggctc ggaaggcgga gcgtctgaag catgtgagct ccagcacagc 960 gactgggtac acggtgacca ttaacggtgt gttggaggtt cctttttgcg ccgactcggg 1020 cgcagacagc agcataatct ctcaggctat ggtgcaggag ttgggtacac tggatagtac 1080 cgtggtgttg gttccgctag agcccccggt cgaggtgaag gtggctggag gagccatctt 1140 gtcgtgtcgt gtctggttct agatggggac gaggaagagt tcctactggg cagggcgacg 1200 atgaaagaca tcgggattga tgtcaacgag ttgctcgagc aacttgcagg ggggggggga 1260 atctacagtg gctgaagcgg atcacgatga tattactgca agcgacccag agcttggttt 1320 ctcagatgag accgatgaaa ttcacactgt ggtgagtaag ctggtcgacg acgcggttga 1380 tgccgggttc gattcatcac tcacaggcga cttgcgtgct ctcgttcatg agtacgagga 1440 tgtgtggcgt ctcaagatcg gtgccgatga gccggccaaa gtggagccaa tgcgggttgc 1500 cctgaggcct gactctgaac cataccgtag tggcgtaagg aagcaccctg acatgcagcg 1560 tgcttttttg cgaacttatg tgcaagaacc gctggacaat gggttgatta ttcggaacaa 1620 caatagccgg tgggcatgtg ctgctttgcc agtgaggaag tctagtgggg atggctatcg 1680 gatcaccgtt gactacaggc ccgtcaacaa gatgactatg cctttggctg gacctacgcc 1740 taacctggcg gcggtaacgc agagcgttcg aggcgcctat ggcttcgggc agttcgacct 1800 ttttaaaggg ttttggcaga tgccgctcgc ggccgagagc caagagcttt ttagcttcgt 1860 gactgaagat ggagttttta ctccgctgcg ggtgcctcaa ggcgccagcg actctgcgat 1920 gttctttcag ctacaaatgc atgattgttt tcgttcaatg ctctacgact cggtgctcgt 1980 gtggatcgac gacgtgttgc tctttgcgaa atctccgagc gagttcattg agaagctgag 2040 gctattcttt cagattctgc gccaacgcaa tctgaagctg aacgctaaaa cgtgcacact 2100 gtttgcacac cgggtggtgt ggtgcggcaa agtcgtcgac ggtgagggac ttgagcatga 2160 ttcagcacga ctgtcggcgc tacgggagat gccattgccg ccgaccgctg cagcgttaca 2220 gagctttctc tgtgctgtaa attggctacg agactctatg gtagactacg cacgtacggt 2280 ggggccgctg caggacaagt tggaaaaggt gatggctgcc agaggtcggc gaaaggccca 2340 gcttgccggg gttgacttga cttggacgaa ggaagatgag gtcgcgtttc agctcgtgat 2400 cgagctgctg ggtatgtcga cgaaccagta tttcgccgac agtgaagctc aagtcggttt 2460 gttttcagat gcatctgcac ggggttggtc cataatactg acccaggttg ccgagtggaa 2520 cgatgacctg cctgtgacgg ggcaggctca gcagatgatg gtttgccgag gcggattgtt 2580 caagagtgcg caagttaact ggtcgaccgt agagcaagag gcctacccga ttgtgcgagc 2640 gtgcggtgac ttggcgtatt tgctggagcg tgagcagggt gtccgaatct actgcgacca 2700 cgcaaacttg attaagatct ttgcaccggg gaaggaggtg aagcagcatg tccgcggaaa 2760 gctgcagtgc tgggctctca agatgattgg gattcgtaac gagatcgagc acattaaggg 2820 ggaggataat ctatgggcag acatcgtctc gaggtggggc cagcctgcac cagcgccatc 2880 ggagagcccg gtcgcgttca agcgcgtgac gacaaggagt gtgcagccac tgtcatcatt 2940 acgtccacta caagatgcgg cgtttcagtg gccatctctg gatgctgttc ggcagaagca 3000 acaacgctat cgtaatgcag cccctgttgc agcagatgac gatggtgtgt ttcgtcatga 3060 tgggaagatt tggatacctg gtgatgctaa ggaattactg cagcgcatcc tgatagttgc 3120 gcactgtgga caacaaggac atcgtggtgc cgacgttatg ctgtcaagtg tacagcagcg 3180 attcagtatc gctcggctgc gggaagtagt cagtcgtttt gctcggaaat gtctgctgtg 3240 caaacatgtc aaaggtggcc ggctgattca aagggcatgg tgtccaaccg caacggcaac 3300 ccgacggaac cagtgtctac acatcgacta cctgtctctt ggtgagagtt acggtgactc 3360 ggcttacgtc ctagtgctca aggatgagct aacacactac tgcgagttgt ccgcttcgga 3420 tgcaccgacc agcagcgttg ctacggaggc tgtgcacgat tggttcaagc gattcgggct 3480 gccagaagag tgggtttccg acaacggctc gcattttaag gcacaggtga tgaaggaact 3540 ggcaggacgt ctgcatgcaa cgcagaagtt cgtcccagtg cacacgccct ggatcaatgg 3600 gactgtggag cgagtaaacc gggacatatt gcaagtgctt cgggtcatgc tgctggaact 3660 tcaactcgac acaggcaact ggctgtactt gttgcctatt atccaggcaa atttaaacca 3720 tgccgccgtg gaatcactgg gaagacacgc ccccgttgag ttgtttgctg gactcccagc 3780 tgcgtcgcca ctcgactgtg tggtggtgcc cgatggacgg acaccccgag tgctgtcgtt 3840 ggatttagag cgtctgagtg agcagcttga caacctgcat gctcatttcc gcgaaatgca 3900 tagtgaagtc gtggaacgca aggaacgcaa gcgtttgacc aacatggcca ggtcaaaggg 3960 tagcacgcgc aacttcgagc caggcgacta cgtgttgtgg ttacgcgtgg ataaacgact 4020 gcagagcagc aaactgctcg ttcgttgggt ggggccgttc cgagttaccg aagccctcgc 4080 caattcgttc atggtggaac atttgttgac caaggacgtc tatgaggtcc acggctctcg 4140 cctaaagcac tactgcgatg ccgatttgga tgtaacggag ggactccgcg aacacgttgc 4200 caaccaaggc attgtgcttg gcgtgcgcgc aattacagag caccggtaca acgatgaagc 4260 aaaagaatgg cagcttttcg tcgcgtggcg tggcttggag gacaatgaaa actcgtggga 4320 accatttgac tccgtctact cggatgtccc gaccattgtt cagcgataca ttgctgatgg 4380 cggacacacg gagttggaac ctatgctcca ctagactcta cgcaagctgt ag 4432 // ID Copia-14_PSo-I repbase; DNA; PLN; 5213 BP. XX AC AAQY01000834; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-14_PSo_; KW Copia-14_PSo-LTR; Copia-14_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5213 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000834; Positions 143292 148504. XX CC Positions [1779-2321] - Integrase core CC 'GCGGCC' target site duplication CC LTRs are 92% similar to each other. XX FH Key Location/Qualifiers FT CDS 912..2597 FT /product="Copia-14_PSo-I_2p" FT /translation="MTTRHDASRDADSSSENDELGESASRLDALIIDAGLS FT ADSGGAERLATSEDEEEQEGNDSHAHVGWWHDGQDHDEGEANTSSGLWYFD FT TAANVHVTGNPWYYVAFTPDPSQSQHIQGVTAALASRIAGVGTVALITMVD FT GEQATVTLNNVFYVPGATHGLFSIGLAAEQGFDFDYDRQSRDFRVQDEGRT FT VIVASPHEATWGFQVTHPSNGDIVGPQDQLLSNFTAADGVASLRLWHERLG FT HTCPQYLKVMVDKGLVRGMLIKQRDLGACDACHIGKQKKKPHLKKLERNTK FT TPNQVVYADLLIPSKDNGTRFEAVLVIMDGFSRFVTLHLLTSKSSEVVNRH FT IKEYVLWAERQAGRHKVRQVLTRTLHVKYKVCQILTDTGGEFVNTEMELWY FT KAHGIERVLVGPKSSQLNLCERTHQSLVEMMKASMHDAGFSKSLWPEALRN FT AVYIKNRINNKGTGGVPYEMLFGVKPDLHHVRKFGALAYVHVPVTPGRKKH FT HDNARLGFVLGYAEDVIYCKVYFPDNRTAKFVSDLRVAEDVMYRDRHEVTV FT EEDDLESLHFVQLRT" FT CDS 2675..4393 FT /product="Copia-14_PSo-I_1p" FT /translation="MYRDRHEVTVEEDDLESLHFVQSGEIVEDDDAVSTLY FT ESTMELEAEGNTAAAPSVHETMAGPTVDLKRGEMCGAPSAAPSASAAPSAE FT ASGDLSALPSGSGRSRTDTREASRATPASSVVDVGGVTVALPSEPAEIRST FT QTETQCELDELQSELQSELLTGSQDDCPSDDTEPEQHSSVIDSPGTMDSPP FT KHDVAATSDAASCDGSESVAGQYRSDVGDTEELDDGNAVAAEEELDDEEAT FT TVASVCGKLMGKRQRDETPSEEIRVEQSAERQEPKRTRRTGLREYHERRRP FT AYLRDYVMNVTQNTSRVLDQNGRPIRASDVRVPRNRRESRRSKYRVFFIRA FT ELEEMAAMRAQHVLEEITIEDVPKDAKPIKTRFVYDIKTDPQGYVIRFKAR FT LVALGNCQRPGIDFGDTFSPVARMSSFRLMVGLAGALNLTLYGGDINTAYL FT NAKLGIRKYVRSIEGFPCEVDGHVYVVMKAFYGLRQSGREWNTELNRWMLD FT RGYQRSLTEPCLYYYVEGGEIMLVLVYVDDILVATKDEKLFEDLDKEYGPK FT DQGLLTQYLGVEVEQTADRFIIRQSK" XX SQ Sequence 5213 BP; 1311 A; 1176 C; 1610 G; 1116 T; 0 other; gcacctacgg acttccggct gcacgcgggt gatccaagat ggcggagccg ctgaagtaca 60 ctagcgaagg agttccaaag aactggaacg gaaaagactg gcagcagtac aaatgggcga 120 tgatgattgt cttcaggaag aagaagctcg tggagattgt ggagggcagt atcacgagat 180 cctcgctgac ctcggcggag gcagaggacg acttcgacga caagccgttg acgatcatgt 240 ctatcatcgg gatgtcgctg ccagcggaca tctttcacca agtgcgcgac gagaccaccg 300 ggacggacat gtggaaggcg ctttgcgtga tctacgagag ccggtcaaac aagacgacca 360 tggctcatcg cgcagagagc atccggcatg aggtggagat gattaagctg tcaccgggtg 420 gagatgttaa caagcattta agcaagatgt ttaatttgcg gacggagttg ctttcgttga 480 actaccaggt tgatgatgtc gccatggttg agctgatgct gaacagcttg ccgcaccagt 540 acgaatttaa gagtctgtag agtggagtgg gctacaacag cgcagataac ttcatcacgc 600 cagagcggac tcgcgagctg attcgtgttg cggactctcg tcagaaggca taccaggcca 660 agagcgggac tggacaacgc ggtaaccaga agattggtgt gactagcggg gctggcagta 720 aggtgaaaac tggaaatggt gaggaccaac aactgggtgg caaatttaag gactcaaaga 780 agaaaagacc caagaagtgc ttcatttgtg ggagcaccga gcacttgagg gctgagtgtc 840 ctgatcgagt ggagggcaac cacgggggcg gagctaatac taatgagcag aagcggaaac 900 cacgtgcgaa catgacgact cggcacgatg cgagccgtga cgcagattcg tccagcgaga 960 acgatgagct tggcgagtcg gcgagtcggc tggacgctct gataattgat gcagggttgt 1020 cagctgattc tggtggtgct gagagactag cgacatcgga ggatgaggaa gaacaggaag 1080 ggaatgactc tcacgcgcat gttggctggt ggcatgacgg ccaagaccat gacgaaggcg 1140 aagcaaacac cagcagtggc ttgtggtact tcgacaccgc cgcgaacgtg cacgtgacag 1200 ggaacccctg gtactatgtt gcctttactc cggatccgag tcagtcccag catattcaag 1260 gcgtgactgc tgctttggct tcgcgaattg ctggagtagg cacggtagcg ctgattacta 1320 tggttgatgg agaacaagct acagtgactc tgaacaatgt gttttacgtg cctggtgcta 1380 cgcacggatt gttttccatt ggactagctg ctgaacaggg ctttgatttt gattatgatc 1440 gtcagtcacg ggactttcga gtgcaagatg aagggaggac agtgattgtg gcaagtccac 1500 atgaggcaac gtggggattc caggttaccc acccgtctaa tggtgatatc gtcggaccgc 1560 aggaccagct tctgagcaac ttcacggctg cggacggtgt ggcatcgctc aggctgtggc 1620 atgagcggct gggtcacact tgccctcagt atctgaaggt aatggtcgac aaagggctcg 1680 tacgtggcat gctgattaag cagcgcgacc ttggtgcctg tgacgcgtgc catatcggca 1740 agcaaaagaa gaagccgcac ctaaagaagc tcgagcggaa cacgaaaacg ccaaaccaag 1800 tggtctacgc ggacctgctg atcccgagca aggacaacgg tactcgtttc gaagctgtgc 1860 tcgtcatcat ggacggattc tccagattcg tgacgctgca cctgcttacg agtaagtcta 1920 gcgaagtggt gaaccgccac atcaaggaat atgtgttgtg ggcagaaaga caagctggtc 1980 gacacaaggt tcgtcaagtt ttgacgagaa cgctccacgt caaatacaaa gtttgccaaa 2040 tcctgacaga cacgggtggt gaatttgtta acacggagat ggagttgtgg tataaggctc 2100 atggtatcga gcgtgttctg gttggcccga agagttcgca gctgaactta tgcgagcgga 2160 ctcatcagtc tctcgtggag atgatgaagg cgtcgatgca cgatgctgga ttttctaaga 2220 gtctgtggcc tgaggctcta cggaacgcgg tgtatatcaa gaaccgcatc aacaacaaag 2280 gcacaggtgg ggtcccgtat gagatgctgt ttggtgtaaa acctgacttg catcacgtac 2340 gcaagtttgg cgcgctcgca tacgttcacg taccagtcac accaggaagg aagaagcacc 2400 atgacaatgc cagattgggt ttcgtactcg gctacgctga ggacgtgata tactgtaagg 2460 tgtatttccc ggacaatcgc acagcaaaat ttgtgtcgga cctccgtgtt gcagaggatg 2520 tgatgtaccg cgacagacat gaagtaactg tggaggaaga tgacttggag tctttgcact 2580 ttgtacaact gaggacgtga tatactgtaa ggtgtatttc ccggacaatc gcacagcaaa 2640 atttgtgtcg gacctccgtg ttgcagagga tgtgatgtac cgcgacagac atgaagtaac 2700 tgtggaggaa gatgacttgg agtctttgca ctttgtacaa tctggtgaga tcgtcgagga 2760 cgacgacgct gtctcgacac tctatgagtc tactatggag ttggaagcag aaggcaatac 2820 tgccgccgcg ccatcggtgc acgagaccat ggccggaccg accgtggatc tcaagagagg 2880 cgagatgtgt ggcgctccga gtgcagctcc aagcgcaagt gcagctccaa gcgcagaggc 2940 aagtggagat ttgagtgcac ttccgagtgg cagtggccgc tcacgcacag ataccaggga 3000 ggcgtctcga gcgacaccag ctagcagtgt ggtggatgtt ggtggagtga cggtagcact 3060 acccagtgag cctgcagaaa tacgaagtac gcagacagaa acacagtgtg agcttgatga 3120 attgcagagt gagttgcaga gtgagctttt gactgggagt caggatgatt gtccgagtga 3180 tgacacggaa ccggagcagc actcatccgt gatagactca cctggaacta tggattcacc 3240 acccaaacac gatgttgctg caacgtccga tgctgcatct tgtgacggta gcgagtcggt 3300 tgctggtcag tatagatctg acgtaggcga cacggaggaa cttgatgatg gaaatgcagt 3360 ggctgctgaa gaggaacttg acgatgagga agcgactact gttgcgagtg tctgtggaaa 3420 attgatgggg aaacgtcaac gtgacgagac cccttctgag gagattcgtg tagagcagag 3480 tgctgagagg caggagccaa agcgaactcg gcgcactggg ctgcgcgagt atcatgagcg 3540 tcggcgcccg gcctacttgc gggactatgt gatgaatgtg acgcagaaca cgtcacgggt 3600 gttggatcag aatggccgtc cgatccgagc aagtgatgta cgcgttcctc gcaaccgtag 3660 ggagtctcga cgtagtaagt accgggtttt tttcataagg gcagagctgg aggagatggc 3720 tgcgatgagg gcacaacatg ttctggagga gatcaccatc gaggacgtgc ccaaagacgc 3780 aaagccaatc aagacgagat tcgtgtacga tatcaagacg gacccccaag gctacgtaat 3840 tcgctttaag gcgaggctgg ttgcacttgg caactgccag cgccctggaa tcgatttcgg 3900 tgatacgttc tcgcctgtgg ctcgtatgtc ttcgtttcgt ttgatggttg gactagctgg 3960 agcactgaat ctgacgctct atggcggaga catcaataca gcatacctga acgcgaagct 4020 aggaatacga aagtatgtga ggtcgattga ggggttcccc tgtgaagtgg atgggcacgt 4080 ctacgtggta atgaaggcat tctatgggtt aagacagtct ggacgtgaat ggaacaccga 4140 gttgaaccgg tggatgctgg atcgtggcta tcaacggtct ttgactgaac cctgcctgta 4200 ttattatgtt gaaggtgggg agatcatgct ggttttggtc tatgtggatg acatcttggt 4260 ggcgaccaag gatgagaagt tgttcgaaga cctggacaag gagtacggac ccaaggacca 4320 gggacttttg acgcagtatc tcggggtgga agtggagcaa accgctgacc gcttcatcat 4380 ccgccagagc aagtaagctc gagaaatttt agagaaattt ggctaagctg aggcacactc 4440 ggttgggagg tgaatgctcg cctcgtgccg cttggtgatg atgaagaaag cgacaccagt 4500 tttccatatc gagaggcagt gggtatgtta atgtatctgg ccactagtac ccgacctgat 4560 ttggcgttcg cactgagcca gctgagtcgc tttgtagcaa agccatccag caagtatgtt 4620 ggggctctga aacgagtcct acggtaccgc gcaggtaccg tgaactatgg aattacgtat 4680 gaccgacagt cgagcgagtc gaagactgtg gtgcttgagg gctactgcga cagtgactgg 4740 gccaacgacc cggagacccg caaaagcacg acaggtttcg tgttcacgct ggctggtggg 4800 gcggtatcct agatgtcgag acgccaattc atcgtcgctc tatctacggc tgaggcagag 4860 tacgtggccg cctgtgaagc gacaatggag gcagttgcag aaagcaacat tctgcaggaa 4920 atactgccac acaagtgtct gaagctgcgc attggtatcg acaaccaagc cgcgcacatc 4980 atggctacga atcctaccta cagccgtcgc acccgacaca tttgagttgc gctggcactt 5040 tgcgcgtgag caacttgaac gaggcgtgat tgaactgcgc acaagataag aggcgaggtg 5100 aaccccgctg acactttcac gaagccgctc gacacgctgc gtctgcagaa catgctgggg 5160 ctggccggca ttggtgatgc agattagtcg aagctcatgc ttcgagggag gcg 5213 // ID R2I-1_PI repbase; DNA; PLN; 6438 BP. XX AC . XX DT 31-JUL-2009 (Rel. 14.07, Created) DT 31-JUL-2009 (Rel. 14.07, Last updated, Version 1) XX DE A family of NeSL non-LTR retrotransposons - consensus. XX KW NeSL; Non-LTR Retrotransposon; Transposable Element; R2I-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6438 RA Kapitonov V.V. and Jurka J.; RT "NeSL non-LTR retrotransposons from the Phytophthora infestans RT genome."; RL Repbase Reports 9(7), 1524-1524 (2009). XX DR [1] (Consensus) XX CC This family of non-LTR retrotransposons belong to the NeSL clade. CC Numerous related families populate different species of CC Phytophthora. The most striking feature of R2I-1_PI is a CC ribonuclease H domain (aa pos. 1696-2088), which is not present CC in NeSL non-LTR retrotransposons from other species, excluding CC Phytophthora). The RNase H domain sequences in R2I-1_PI and CC related families in Phytophthora species are ~40% identical to CC this domain id diverse genes and plant Gypsy-encoded RNase H ( CC while the identity to RNase H in other clades of non-LTR CC retrotransposons cannot be even detected by BLAST). Most likely, CC this domain was recruited by a common ancestor of Phytophthora CC NeSL non-LTR retrotransposons relatively recently. XX FH Key Location/Qualifiers FT CDS 379..5490 FT /product="R2I-1_PI_1p" FT /note="Contains RNase H, reverse transcriptase and FT restriction enzyme-like domains." FT /translation="MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQN FT PRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDAAQFECALC FT PYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACA FT RRNQRAVPPAPTPVAPTRPEATPQPTGYLAAAMTAAAAAASSDTVVAAATN FT MQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTPT FT ARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATPGAQVQRVEDTTAA FT QDDTVQQDHDADTAQVSPPRRTPTRWGPRPSSTQEPSPMTGEPAATLAARR FT PLTPAATGTRATRWGPCHRAIGAAAIARLVTGLSTEPAQPQRRQPPPPQEP FT PSQPEPLAAAATAAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFD FT GACRRNPGPGGAGAALFAPSGAVVWTCSHYMPSRSETNNTAEYTALLLGVQ FT SAVHHGASHLEVEGDSSLVIAQVKGTFACRNARLRQLRNRVRHALRSVDTH FT KLRHIDRQANAHADRLANRALDQRRTSSECGTHGSCMDSCLAVPTALAAQE FT TPPAAPPSTSATPAEGNAMDDIAAEIAARDEGETFPVLPIGPGSAPERQPR FT LRLRQLSDEERDAAADALQELADTMASKIEDADSWTSGEGYISSIPERIRE FT VLQPYATAPPQPGRSRRQQRRRPPRVTRNQREHRLDEALDDMAATQQATPR FT DQRAVRRARRRVGRVRASMAQQELRHEFAKDESKCVAKILKTASTETAAED FT EHPETCPIDAATLHAHFTGVNAPRTDFDYDATSGREFRAAMSDLPPATVEI FT DAFDAELTIDEVEDQLTRAAKTSSPGHDGIDYGIYSRFAAQLVPLLHAVFQ FT FCWRHRRVPRLWKVGIVRLIHKKGDPRQPTNWRPICLQPTIYKLYSGLLAH FT RLSRWLEGNDRLPMAQKGFRAFNGCHEHNFMATTLLDQTRRQHRKLYQVWY FT DLRNAFGSLPQQLMWRVLRHLGVDSGFIDRCRDIYRDSAFVVANAADGATD FT PVRQEVGVYQGCPLSPLLFVAALVPLVRRLEKLDGVGVPLADGVRPCTTAY FT ADDLKVFSDSAAGIRKCHDTVAGFLAWTGLRANPGKCASLAVTTNARGNPT FT RDSSMRLEVHDAAITTLSLHESYRYLGVGDGYDHVRHRLQLEPKLKQLKRE FT AVALLTSGLAPWQVVRALKVYVYPKVEYALRHLRPLQSQLQAFDRVVSKGL FT RHLLSLPRSATSEVLYAPTSSGGLGLQPLVELHRALQLAHAWQMLHSKDPA FT IQAVARAQACQVVRKRYRLQEDHWRGRDDELVRSFLNSELAASPHAEVLRR FT NGDIASLWSDVQRWLRIYHLRFEHCDETEAHGPLSFRVPHHNKWLTHKTVL FT RHVKLHLKIRHQTRWKGMVDQGKTVRVHGGVGAKFMTTGAGLSDDDYRFGV FT KGRLNQVDTNSVLKRKRLRAHTTCRDPTCSSAETLAHVLNHCESNMDAIRQ FT RHDDALEQIGSKIRGALDRAKSPTELRLNQTVPEYTGAALRPDIVLRNVAA FT KTMVIADLAVTFEDQAARARHSSLQLSHDHKTLKYQPIVAELQHKGWRVQT FT AAIVYGTLGSVQPSNFKAYTEKFKLHKREARQLDLQLSSHCIRASHRIWGW FT HCRQHRDRQRSGTASRASRGSGGAPRRTSQAPARR" XX SQ Sequence 6438 BP; 1263 A; 2253 C; 1941 G; 981 T; 0 other; agctcggcct cgcggctgcc ttcccaggcg ccgccgactt cgcgctctgg cgcggcccac 60 acgccgccgc cgagcctcca agcgcgcccg ttggctttcg cagacgcagg gctcgcggcg 120 acggccctcg ccagccccca agaccccccc tacgatgtgg caccacccgg cagggcggcc 180 ggcaggctgc ccgactcggt atcgccgggt gctacactct cagccgccac agctcgggcc 240 ttggcggtcc gccattggcc cttggagctc gacagcgaca gcagcgacga cgaggacgct 300 caagaccccc acgccgccgc cccagaaccc ccagaagacg tcgcgagtgt gcttgcccca 360 cccggcaggg caggcagcat gctcgccgac ccagcagcgc tggcagccgg tctggctcgc 420 gctccgccgc ccccatcggc accccaggac ccaagccccg ccttccctgc tggccccgcc 480 ggccagaacc ctcgcgccgc cgccccagcc cgtgttgaag tccacacagt cgtggcacca 540 cccggcaggg cgggcggcat gctgcccgac ccggggttgg ttgaagaacc tatccaagcg 600 acgtacgcgc acgacgctgc ccagttcgag tgtgcgttgt gcccgtacgt cgctgagagc 660 atggcagtgc tcgttcagca ccgacggtcg gctcaccgcg gcacccgctt caaggacatc 720 ttcaccagcg ggtgccagtg cagcctagtg ttttacgcgc gcattgttgc cgccagccat 780 gcagtggcct gtgccaggcg caaccagcga gccgtgccac cagctccgac ccctgttgcc 840 cccacgcggc ccgaggctac cccacaacct actgggtacc tcgccgcggc gatgactgcc 900 gctgcggcag ccgcatcaag cgacaccgta gtggcagccg ccaccaacat gcagagcgcc 960 gtgccagccg ccgccaagac cactgggctt cagctcgtcc cccccgagct ggagcctgcc 1020 cttccgcagc gtgcttcttg ccatgcaggc aaacgccgtc ggctcaatgc cgacgaggcg 1080 gtgacaccgt gtacgcctac ggcgcgggtg tcgccgcaaa cagaagtggc gatggcgcct 1140 cacgacgcac cccaggacga caccgtctta cagcgtgagg ccgccgagcc acagccagac 1200 ccagcagcaa cgccgggtgc ccaagtgcag cgagtcgaag acacaactgc ggcgcaggat 1260 gacactgtgc agcaggacca cgacgccgac actgcccagg tctcgccgcc ccggcgcaca 1320 cccacacgct ggggaccaag accaagctca actcaagagc ctagccccat gacaggcgag 1380 ccggctgcca ccctggcagc gcgaagacca ctgactcctg ccgcaacggg cactcgtgcc 1440 acgcggtggg ggccatgtca ccgcgcgatc ggggccgcag ccatcgcacg acttgtcacg 1500 ggcctttcaa cggagccagc gcagcctcag cgacggcagc caccgccacc acaagaacct 1560 ccatcgcaac cagagccgct agcagcagca gcaacagccg cagcagacat agcagcaaca 1620 gttgcagcag acattgcggc agcggcagcg aacgcagcaa tggacgtgga tggtggaccg 1680 gcagccgacg agacatggct gttgcgcttt gacggcgcat gccgacggaa cccaggacct 1740 ggtggagcag gtgccgcact ctttgcgccc agcggtgccg tggtgtggac gtgctcgcac 1800 tacatgccaa gccgctccga aacgaacaac accgccgagt acacggcgtt actgctcggc 1860 gtacagagcg cagtccacca cggtgcctcg cacctggaag tcgagggcga cagcagcctg 1920 gtaatcgctc aggtaaaggg caccttcgca tgcaggaatg cgcggctccg ccaactccgc 1980 aaccgagtgc gtcacgcgct ccgctccgtg gacacgcaca aactccggca catcgaccgc 2040 caggccaacg cgcatgcaga tcgccttgcc aaccgcgcgc tagaccagcg gaggaccagc 2100 agcgagtgcg ggacgcatgg ctcgtgcatg gactcctgcc tcgccgtacc cacggccctg 2160 gcggcgcaag aaacgccacc ggcagcacca cccagcacca gtgccactcc agccgaaggt 2220 aatgccatgg acgacatcgc agccgagatt gctgcgcgtg acgagggcga gaccttccca 2280 gtcctgccaa ttggcccagg ctcagcccca gaacggcaac cccgactccg tctgcgccaa 2340 cttagcgatg aagagcgcga cgcagcggca gatgccctgc aggagctcgc cgataccatg 2400 gcgagtaaga tcgaggatgc tgacagctgg acctccggcg aaggatacat cagctccatc 2460 cccgagcgta tccgagaggt actgcagcca tacgctacgg ccccgccgca gccgggacgc 2520 tctcgccggc aacaacgccg tcgaccacca cgggtgacgc gcaaccagcg cgaacatcga 2580 ctcgacgaag ctttggacga catggcagcc acacagcaag cgaccccgcg agaccagcgg 2640 gctgtgcgcc gtgcgcggcg acgtgtgggc cgggtgcgag cctcaatggc acaacaggag 2700 ctgcgccacg agtttgccaa ggacgagtct aagtgtgtgg ccaagatcct gaagacagcg 2760 tcgacagaga cggcagcgga ggacgagcac ccggagacgt gccccattga tgcagctacg 2820 ctccacgccc atttcacggg agtcaacgcg ccaaggacgg acttcgacta cgatgccacc 2880 agcggccggg agtttcgagc ggcgatgagc gaccttccgc cagccaccgt ggagattgat 2940 gcgttcgacg cggagctgac gatcgacgag gtggaggacc agctcacacg cgcggccaag 3000 acctcaagcc ccggccacga cggcatcgac tacggcatct acagccgctt cgccgcgcag 3060 ctcgttccgc tcctccacgc ggtgttccag ttttgctgga gacaccgtcg tgtgccaaga 3120 ctgtggaagg tgggcatcgt acgcctcatc cacaagaagg gcgacccaag gcagccgact 3180 aactggaggc cgatctgcct tcagcccacg atctacaagc tctacagcgg gctgctggcg 3240 catcggctct cacgctggct ggaaggtaac gaccgcctgc cgatggccca gaaggggttc 3300 agggccttca acgggtgcca cgagcacaat ttcatggcta ccacgttgct ggaccagacc 3360 cgccggcagc accgaaagct gtaccaagtg tggtacgacc ttcgcaacgc cttcggctcg 3420 cttcctcagc agctcatgtg gcgcgtgctt cgccaccttg gcgtcgactc aggcttcatc 3480 gaccgctgca gggatatcta cagggactcg gccttcgtgg tggcgaacgc ggcggacggt 3540 gcgacggacc cggtgcgcca agaggtgggc gtataccaag gctgcccact cagcccgctc 3600 ctgttcgtcg cggcgctggt gcctctcgtg cgccgtctcg agaaactcga cggcgttggt 3660 gtgccactgg cggacggtgt gcggccctgc accacggcct acgccgatga cctcaaggtg 3720 ttcagcgaca gcgccgccgg catccgcaag tgccacgaca cagtggctgg cttcctcgcg 3780 tggacagggc tgcgcgctaa ccctggcaag tgtgccagcc tcgcagtgac gacgaacgcc 3840 cggggcaacc cgactagaga cagcagcatg cgtctcgagg tccacgacgc cgccatcacc 3900 acgctcagcc tccacgaaag ctaccgctac ctgggcgtgg gtgatggata tgaccacgtg 3960 cgccatcgtc tccagctcga gccaaaactc aagcagctca agcgggaggc ggtggcgctg 4020 ctgacgtcgg gtttggcacc gtggcaggtg gtgcgcgcgc tcaaggtgta cgtctacccc 4080 aaggtggagt acgcgctgcg ccacctgcgc ccgctgcagt cgcaactgca ggcgttcgac 4140 cgtgtcgtct ccaagggctt gcgacacctg ctgagcctgc ctcgctcagc caccagcgag 4200 gtgctgtacg ccccgacgtc cagcggaggc ctgggcctgc agccgctcgt ggagctgcac 4260 cgcgccctac agctcgccca cgcgtggcag atgctgcatt ccaaggaccc agccatccaa 4320 gcagtggcaa gagcgcaggc ttgccaggtg gtgcgcaagc gctaccgcct gcaagaagac 4380 cattggcgcg ggcgcgatga cgagctcgtg cgcagcttcc tgaactccga gctcgccgcc 4440 tcgccacacg ctgaggtcct ccgtcgcaac ggtgacattg cctcgctgtg gtccgacgtg 4500 cagcggtggc tgcgcatcta ccacctgcgg ttcgagcact gcgacgagac agaggcccat 4560 ggcccgctca gcttccgcgt gccgcaccac aacaagtggc ttacgcacaa gactgtgctg 4620 cggcacgtga agctacacct gaagatccga caccagaccc gatggaaggg catggtggac 4680 cagggcaaga cggtgcgcgt gcacggtggg gtgggcgcca agttcatgac gaccggagcg 4740 ggcctgtcgg acgacgacta ccgcttcggg gtgaagggcc gcctcaacca agtcgacacg 4800 aactcggtgc tcaagcgcaa acgactgcgg gcacacacga cctgcaggga cccaacctgc 4860 tcctcggctg agacgctggc acatgtactc aaccactgcg agtccaacat ggacgccatt 4920 cgccagcgtc acgacgacgc cctggagcag attgggtcta agatccgcgg agcgctcgac 4980 cgcgccaagt ctcccacaga gctgcgcctg aaccagactg tacccgagta cacaggcgca 5040 gctctacgcc cagacattgt gcttagaaac gtggccgcca agacgatggt gatcgccgac 5100 ttggcggtca cgttcgaaga ccaagcggct cgcgctcgtc actcctcgct gcagctcagc 5160 cacgaccaca agactctcaa gtaccaacca atcgtggcgg agctgcagca caagggatgg 5220 cgagtgcaga ctgctgccat agtgtacggc acgctgggct cggtgcagcc cagcaacttc 5280 aaggcctaca ctgagaagtt caagcttcac aagcgcgagg ctaggcagct ggatctccag 5340 ctgtctagcc actgcattcg cgccagccac cgcatctggg gctggcactg ccgacagcac 5400 cgcgatcggc aacgaagcgg cactgcctcg cgagcgtcgc gtgggtctgg gggggccccg 5460 cggcgcacat cgcaggcacc ggcacggcga taagctggtc atcatgaccg acagggcact 5520 acccaggtag ggaaccgccc ttaaaaaacc caggaagaca caaacaccct ccacttagtg 5580 acatacatat tttagcctag atttcagtta cggagaggtt actaactggt aaatacgaac 5640 acatattctg ttctaatcag tgtgaaaact ggttttcgcc ttttggcgga ctttttcact 5700 cgcatttttg ggcaatcgtc tgcggctagc ttgctagcgg cggacgagcg gtctccgggg 5760 gcgttcacct ttcccccgcg aggccaacta caccgatctt ctctacactt ttctaattcg 5820 cctccgtctt cggtcttcgg ttgtcgggct tttttctttt tgaccaatca gagcgcgcca 5880 tgcgcctctt ctggccaatc agagaccggg ccctgtcctc ggacagcgag gcctccacgg 5940 ccagccaatc gagtctcggc agcgacgcgt ctttctatag cgcagctgac gaggccgatc 6000 tggcggcccc cgattggtcc gactttcggc caatcagcga cgacgagggg gcaggggttt 6060 acacttttgc ccccgtttcg acttcaactt caggccaaaa tggcgatttg gaccctccac 6120 gcgccgtgcc actgctcggc accggcggcg attcagcggg tgcaacttcg ggcacgtgtg 6180 caacacatgc agcgcccatt gcacgccaag cggcatcgcg ggacgacgcc tcggccgccc 6240 aagcgcagcc ccgcccttcc agcacgacct cgcgccgttt ggcggatcgc catcaagacg 6300 tgcgagagcc aggcggggtc gggcaaaata tacttactct aagtatgccc gaatccctgc 6360 cctctcaggc tgaacgcggc cccatacttg atctaagtat gggaggatcc ctggcctctc 6420 aggctgtacg cgagaccc 6438 // ID Gypsy-8_PSo-I repbase; DNA; PLN; 12233 BP. XX AC AAQY01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PSo_; KW Gypsy-8_PSo-LTR; Gypsy-8_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12233 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000384; Positions 13862 1630. XX CC 'GTCC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 88..1662 FT /product="Gypsy-8_PSo-I_1p" FT /translation="MSSPRTPGDGQGDGVTDGSESNFDFEGATDVFGSSES FT KASAEKVAAGNVLGPIAEEQAVGQDDEAPGAEASAVPVGEAPDRPDLRMGA FT EAQGRASLLETSRGRRALDASLRELVLRAPAVAGGEARDVPATTAPTTGVV FT ATVVATSSGTRLSESVPGEATPVPGDASAVPTSAFATPPAASMAGASGAPA FT PAPAPTRTRTTRTLTWADVAAMAAGMGPPPPTAASTGPPPTTVSAATVASA FT APSTMSSASTTSTAGTGPVPSGGTHGPSGNPNVELLARVLTRALSTPPPTS FT QGPTVQQGGGTSLPPPTAGGTGQAPPPAGGTGQGPTTSSAAAQAYQAPSAA FT WPVSPPVVSAQPTVAARPTQSAPARGNVNPSAEAYLDSLVRQALQQYLGGA FT AGTVAATGVPTPNAALMQSVPVQTTTVLSRPVPSVPTPTHMMVPAPNPSAL FT SMAAIPSYGELTIAQTPMGGGGATPASAFYPSFQPVSAMTPVASMPMSQSA FT GAAPGAYSGQMAVSAAATPMGAAASAPLS" FT CDS 3880..5691 FT /product="Gypsy-8_PSo-I_2p" FT /translation="MKRRMQENAARQKAMSIEEMSKMLGIPVAKLERTKEV FT ARRAGSTPEYWLEWYDKMLAVASEAKRANRDFKGHGPYQKPEAKSTGPLAA FT VADGPNPHEGVVEVTSAAARVSGGMEKGIIESARDHGKDEAAVEQEVVRNV FT CSSLAKNEAASESETKDEMDREDKTVPFTSRSVIRKVVHRRLKGLVRDGED FT GADGKVPPFRDKNPAGLAEDEKEWLRGQPRVSFKGVDERRLRVLADWSERC FT YAGEAAAICEKLKLRAKRGVAEARVGKDSAPGKAEKHVSFQVGGTVCVVKG FT PPERDKALEEDSPHCVHVIGAVGRPRRRKLGLRPVDFGDEDDERVVPEGKR FT VIGSVGGIEALAGGFIGDVPTEMLIDTGAIASLVDKKVLKWLGRSAETLRP FT YTGGLDSVTGHEVQIKGVIDLPVTLGSLEKLLPFAVVNRLHVDSILGTDSL FT QLFRAVIDMEAQTMTLKDTDEVIPLGETRVEESYSASVAATVRLEPGSQTL FT VRSRVRGGARQGSVVLVEGLAGGEASLRVARALCTVHQEQVLVEVCNASIE FT EMVIGEGAVIGVASAVPESAFSFEREEPSGSEDVSKVIGSVSAEKDPSQDA FT REAKME" FT CDS 7738..9120 FT /product="Gypsy-8_PSo-I_3p" FT /translation="MDVQLRVLILRMSPNFVMKNGVLMRRVYLKARAGPAS FT TITVPVIPLPFIETVLHFCHADIFSAHLGKTKTIDRVRRHAYWPGWKKDVA FT EYVRCCPICNGGKGSRPWKAGRMQRMSIMGLSGSFSLVVVDAIGPLPATER FT GNKYILVFADYFTRWVEAFAVAALDSITFVDVMVDGVICRHGVPEQLLSDR FT GTNFTSELARSLYQTLGIKKLFGSAYHPQTQGLVELFNGTLLGMLRMFVHE FT SQNDWDVYLPRVLFAYGSSYHEALGDSPFFSLYGRDPKLTLDLAFMNTGSD FT WKSSEVASYRRQLYQSLHDSRRMVERQLIKAQDRHERRLRGQKEVVFAVGD FT AVWVYQLFRARRGERKTKKLAFTWHRPYRVLGQVGENAYRIDTPSHPDKVV FT TVNVNRLKRFKGRWSRPFVGDVPEGVDGSPEVEEEGPLEEDDLPETSFVER FT VTIGGEETAFTNAGCL" XX SQ Sequence 12233 BP; 2347 A; 3258 C; 4495 G; 2132 T; 1 other; agtaggtgga gaagcagggt acttctcact gacaagagag gcgcctggat caaggcgtgc 60 tgaaggaaga aggcggtggg gaactggatg agttctccaa ggacgcccgg cgacgggcag 120 ggtgatggcg tgaccgacgg gagcgaatcg aacttcgact tcgagggcgc cacggacgtg 180 ttcggcagca gcgagagcaa ggccagcgct gagaaagtgg cggctggcaa cgtgctgggc 240 ccgatcgcgg aggagcaagc cgtcgggcaa gacgacgagg ctccaggtgc agaggcctcg 300 gcggtgcccg tgggcgaggc gcccgaccgg ccggacctga ggatgggcgc cgaggcccag 360 gggcgtgcga gcctgctgga gacgtcgcgt gggcggcgtg cgctggacgc ctccctccgg 420 gagctggtgc taagagctcc tgcggtggct ggcggtgagg cccgggacgt gcctgcgacg 480 actgcgccga cgacgggcgt ggtggcgacg gtagtggcga cgtcctcggg gacaaggttg 540 agcgagagtg tgccaggcga ggcgacgccc gtgccgggag atgcgagcgc ggtgccgact 600 tccgcgtttg caactccgcc ggccgcgtca atggcgggag cgagcggagc ccctgctccg 660 gcccctgccc ctacaagaac gaggacgacg aggaccctga cgtgggccga cgtagcggcg 720 atggcggctg gtatgggacc gcctccgccg acagcggcga gcacgggacc gcctcctacc 780 acggtgtctg cggcgacagt ggcttcggcg gctccctcga caatgagttc cgcgagtacc 840 acttcgacgg caggtaccgg accggtaccg tcgggtggga ctcacgggcc gagcgggaat 900 ccgaacgtgg aattgctggc gcgggtattg acgcgggctt tgagcacgcc cccaccgaca 960 tcccagggtc ctacggttca acagggagga ggaacgagtc taccaccgcc gacggcggga 1020 ggcacgggac aagctcctcc gcctgcggga ggtacgggac aggggccgac tacgtcaagt 1080 gcggccgccc aagcgtatca agctccgagc gcggcgtggc cagtgagccc gccggtggtg 1140 tctgcgcagc cgacggtggc ggcccggccg actcagagtg cgcccgctcg ggggaacgtg 1200 aacccctcgg cagaggcgta cctcgactcg ctggtgcggc aggcactgca gcaatatctt 1260 gggggagcgg ctggaacggt ggcggccacg ggagtgccga cgccaaacgc ggctctgatg 1320 cagagcgtgc ctgtgcagac tacgacggtc ttgtctcgac cggtgccgtc cgtgccgacg 1380 ccgacgcaca tgatggttcc ggcgccgaat ccgagcgctt tgtcgatggc ggcgattccc 1440 tcgtacggag agctgacgat cgcgcagacg ccgatgggcg gaggcggggc gacgcccgcg 1500 agcgcgttct acccctcgtt ccagccggtg agcgcgatga cgccggtggc gagtatgccg 1560 atgagccagt ccgcaggggc tgcgcctggt gcctatagtg ggcagatggc tgtgagcgcg 1620 gctgcaacgc cgatgggggc ggccgcgtcg gctccgttga gttgagcatg ggatcgtacg 1680 ggcagcagcc gggctaccag cagtacgtgc ccccggtgac gtcggagacg cccgggtacg 1740 gtcaggggta cgccggctac actgcccctc tttcgactgg tctcgctccc gcgtttggag 1800 ctggccaagg tggaggagta ggtgcgacca atgaggcaag gagtgttgcg tatggaggct 1860 cccacgtggg tggcatcccc acggagcttc gcaatgcggt gaaggtgatc gtgccgttct 1920 actcggaggt tgcatcgagc gaacgtgctg ctgcgttctg gcggtcgttc gagaagtgca 1980 ccgagggcat ggatgacgct ctgcgactga cagcattcga gcagtgcatg aagggcaagg 2040 ttggccaaga gtggtggtac aactccagga tcgagaactt cacgacgctc aagatccgct 2100 tccacaaccg gttcgtcagc cgtacgccgg ctcaaatgtg gagccagcta cgcccggcga 2160 ggcggaacta cggtgagtcg gtcgaggagt ggggcgaccg cgtcaacagg atgtgcgagg 2220 cgctccgcta caacgggcca cgcatgcggt acgagttctt cgtagagggc cttcgcaaca 2280 agcagttgcg tgccatgctg aacgcgagcg tggtctcgac gatcgaggag gcgggtacgc 2340 tactgttgtt caagggactg catcgaccgg tggaggaaga ggacgagttc gccgagagcg 2400 agaagacgtc cggcggtggt aagacggagc agtccaagct ggccgatcag gtgcacgaga 2460 tgcacgggat gatgaagcag cagcagaggg cgctcgcgtc tgcgcctcag gctccgcgtt 2520 ctcctcgccg accctcgatc aatgccgcgg cgccgacaca gacggcggct gcgagttcgg 2580 gtgaaaccgg tggtggtggt tcggagcgtc aactccatat tcgcatggcg cctgacacgc 2640 acacncagga aggcgagacg gtctgcggtc gctgcgagcg acggaactgc agtcgcttga 2700 cgtacgcccg aggtaagggg acgtgcaacc gctatggcga gttcggccac ttcttcatgg 2760 aatgctactt gcccagaaca ccgacgaatg gcggttctcg gggcaacgga ggaggtggtg 2820 ctcaaggcca aaggacaagg cagcgcggcc tgtgtgacgg cacggaccac ttcatggcga 2880 agtgcccgta caaggcgcag ttgaaggatc tgctcaagag cttggccggg aaggaccccg 2940 cagtactagc ggaggccctg aaccgagcgt gaagagggca ggaggaggga gaaggaagtg 3000 tcgctccttc ctcttgcctg acgggcaaca cagcggagca cgtcgtggcg gcgatggcgg 3060 aaatcggcga acggttgggt gctctgcagg acgaaggcag cgcgtcgcgt gacgaagacg 3120 gtggcgtgtt ggccggggaa tcgacggaaa atgttagtgg tgaaacagaa gagaaggtag 3180 gtactgcccc gcgtggcaca cttgccgatg aaggcctgga cgacgacacg agcgagaacg 3240 gcgaagccga actcgtcgtg ctgaaggtga gcgcggacgg gcgcgtgaag agctccgtca 3300 cggtgaaagt gaacaaggag gtggtgcgtg cgggcaccgt cttgactgga atgcgcgtcc 3360 ccggagcaac gaagagctcg ggcgcagact gcgacaagga ccccgacggc gcgatgaaga 3420 acgccgtcgt gggcaacatg aacgaccagg acggtgcgaa ggagggcact ggcccgaatg 3480 atatggtaaa cgcgggtggt gcgacggaaa gcactgtccc gatcggaagg agcagcgtcg 3540 ggtctggacg ctggagggtt actccgcgag gttacctctg gcacggacac gctggaagat 3600 tgcattgaag atgctgaggt cgcgcggctg gagcggttct ccactgtgac caaggcaaac 3660 gacacggccg agtcggatac tcagggccgt gccgagaagg gcggaacacc ttcgactgag 3720 agtaccaagg gtagagcgtc tcaggctcgc tatggatgcc tgttcgccga ccgagagctg 3780 gagctgctcg aacagggtga gtatgggctg gcgagcgacg aacctgatga gtacgacaag 3840 gagttggagg aacggctgtt cccccgagac gaagtggaga tgaagcggcg gatgcaggag 3900 aacgccgcga ggcagaaggc gatgagcatt gaagagatga gcaagatgct cggaattcca 3960 gtcgcgaagc tggagcggac gaaggaggtg gcgcggcgtg ccggctccac gcccgagtac 4020 tggctggaat ggtacgataa gatgctggcg gtggccagcg aggcgaagcg cgccaatcgt 4080 gacttcaagg ggcacgggcc ctaccagaaa ccagaagcaa agtcgacagg cccgttggcg 4140 gccgtcgctg acggtcccaa cccacacgaa ggagtcgtcg aggtcacgag tgccgcggct 4200 cgggtgagcg gtggaatgga aaaggggatt atcgagtcag cgagggacca cgggaaagat 4260 gaggctgcgg tagagcagga agtcgtgaga aatgtgtgct cgagtctcgc taagaacgag 4320 gcagcgtcgg agagcgagac caaggacgag atggaccgtg aagacaagac ggtcccattt 4380 accagtcggt cggtgatacg gaaggttgtt caccgacggc tgaaggggtt ggtgagggac 4440 ggtgaggacg gcgccgacgg caaggtgccc ccgttccgtg acaagaaccc ggccggcctg 4500 gccgaggacg agaaggagtg gctacgtggg caaccccgag tctcgtttaa gggggtcgac 4560 gagaggcggc tgcgggtatt ggcagattgg tccgaacgat gttacgccgg ggaggcggcg 4620 gccatctgcg agaagctcaa gctgcgcgcg aaacgaggag tggctgaggc tcgcgtgggc 4680 aaggatagtg ccccgggcaa ggccgagaag cacgtgtcgt tccaggtggg cggcacggtg 4740 tgcgtggtga aggggcctcc tgagcgagac aaggctctgg aagaggatag ccctcactgc 4800 gttcacgtga tcggcgccgt ggggcggccg aggcgtcgga aactggggct aaggcccgtg 4860 gactttgggg atgaagacga cgaacgagtc gtccccgaag gcaagcgcgt gattggaagt 4920 gtgggtggta ttgaggccct ggcgggaggt ttcatcggcg acgtgccgac ggagatgctc 4980 atcgacacgg gcgcgatcgc gagtctggtg gacaagaagg tgctcaagtg gctcgggcgt 5040 tctgccgaga cgttgagacc atacacgggc ggactggaca gtgtcacggg gcacgaggtc 5100 cagatcaagg gcgtgatcga cctgcccgtg acacttggct ccctggagaa gttgttgccg 5160 ttcgcggtcg tgaaccgcct gcacgtcgat tcgatcctgg gcacggactc gctgcagttg 5220 ttccgtgccg tgatcgacat ggaagcgcag acgatgacgc tcaaggatac ggacgaggtg 5280 atcccgttgg gcgaaactcg cgtggaggag tcgtactccg cgagtgttgc ggcgaccgtg 5340 cgtctcgagc ccggctcgca gacgttggta cgatcgaggg tgcgcggcgg cgccaggcag 5400 ggctccgtcg tgctcgtcga aggactcgct ggcggtgagg cgtctctgcg agttgccagg 5460 gcgctgtgca cggtgcatca agagcaagtc ctggttgagg tttgcaacgc ctcgatcgag 5520 gagatggtca tcggtgaggg cgccgtgata ggcgtcgcgt ccgccgtgcc tgagtcggct 5580 ttctcgttcg agcgtgaaga gccgtccggg tcggaggacg tgagcaaggt cattgggtcg 5640 gtgtcggccg agaaggatcc gtcgcaggac gcccgcgagg cgaagatgga gtaggagctg 5700 gccaaggtgg ctgcggaaga cctccaagcc gacttcagcg actcgtccat ggacgccgag 5760 cagcaggagc tattcgcgag catgttgggc gacttcaaag acatgttcgt cgagacgtcg 5820 aagcgtccgg ggcggacgga cttgctactg ttcagcatcg catgctccga tcaagcagcc 5880 ctcgtaccga gtgtcgaagg cggagggtga cgtgatggag gcggagatcc agcagtatct 5940 ggagctcaac ctcatccggc cgtcttcgag tccgtgggca agcccagtgt tgatgaaacg 6000 caagccggat ggtggaattc gattctgtat tgattaccgg aagctcaatg cagtcactgt 6060 gaaggacagc taccctatgc ctcttatcga cgacatcttg gacgtcctgg ggcgggcgaa 6120 gctcttctcg acgatggaca tcgcgtccgg gtactggaac gtgcccatgg agcctggaag 6180 tgtcgagaaa acggccttca cgagcaagtt cgacctgtac gagtggctca tcatgccgct 6240 cgggctgtgc aatgcggtgc cggccttcga gcgcttgatg gagaacgtgc tggtcgactt 6300 gaagtggagg acgtgtctag tgtacttgga tgactgcgtc gtgttcagcg acgacttcgc 6360 gagccacttg gtccgcgtgt gacaggtgct ggagcggttc cgagcggcgg gcttcaaatt 6420 gaagatgaag aagtgccatt ggggtcgtgc ccaggttgcg ttcctgggtc acatagtgac 6480 gccctcgggc atactgccca acccggagaa ggtgaaggcg gtactcaaca tcgcgaagcc 6540 gtacgactta cgcacgctgc gtgcgttcct cgggctgacg agctacttca ggagatatat 6600 ccctgggtac gctgcgatcg ctgcgccact ggaacggctg aagcagaagg agacggtctt 6660 ttgctggggt ggagactgcg attcggcgtt ctaccagctg cagcgcagct tggtacgccc 6720 gccgatcctg gtgtatccgg acttcactaa gagattcaag ctgtacgtgg actcctcgca 6780 cctggcggtg ggggcgtgcc tgatgcaaga ggtggacggc cgagactggg ccatcgccta 6840 cgcgagcaag atgctggtgg ggtcgcagcg gaactggatc cgcaagacgg acggtacaac 6900 ggagatcgag tgctggggcg tggtctgggc cacgcggaag ttccggtgtt atctcgacca 6960 cacggagttc gacctgtata cggaccacca ggctctgacc tggatcttcg gtgagaatac 7020 gcggacgacg aacgcgaagt tggcgcgctg ggctatggag ttgtcccagc tacgcttcaa 7080 gattcatcat cgtgcagggt cgctcatggg tcacgcggac ggcctgtcga ggcttcgaca 7140 gcggcccgtt attggcgcgg tgaccatgaa cgacctgctc aacccgcctg gacgtctcga 7200 aggtgacggt ccgggccggc tacgaccttt gcggcttgaa gacgtatgga tccctgtggc 7260 gacgcccgaa gggcgtggcg ccgacgaagt cggggagcgt tcgggccgag atgaggggcg 7320 tggagaagtg cgacgaccgc tgcgtctgga ggacgtgtgg atgactggag cggctgacga 7380 cgagggtacg gccgtcgaag tcgaagagca gcatgaaggc gatgagcgcc tgagcgagcg 7440 cgtcgagccg gacctggctc cgagtgcgga cgagcgagat accgtcccag ccagagagcg 7500 gggcaacgac gagagaagaa cggaggtcgc gcgtgactcc gaagaggccg ctcgaggcga 7560 gggtccgcgt ctcacgcagg aggagcagaa agaggacgag ggcggcagga cggaggcgga 7620 ctatccctcc gccatggact cgttcgggct cgacagcgag aagttcgtcg aggagcaagg 7680 gcggactccg tggatggtgg cgatgaaagc gttcctcgag aggggggaac tctctcgatg 7740 gacgtgcagc tacgcgtgct aattctacga atgtcaccga acttcgtgat gaagaacggc 7800 gtgctgatgc gtcgcgtata cctgaaggca cgggctggac cggcgagcac gatcacggtg 7860 ccggtcatcc cgttaccgtt catcgaaacc gtgctacact tctgtcatgc agacatcttt 7920 tcggcccact tgggcaagac gaagactata gatcgggtgc ggcggcacgc gtactggcct 7980 ggatggaaga aggacgtggc cgagtacgtg cgctgctgcc cgatatgcaa tggcggaaag 8040 gggtcgcggc cgtggaaggc tggacgcatg cagaggatgt cgatcatggg cttgtcgggt 8100 tcgttctcgt tggtggtcgt ggacgcaata ggcccgctgc ccgcgacgga gcgcggcaac 8160 aagtacatct tggtcttcgc ggactacttc accaggtggg tggaggcgtt cgcggtggcg 8220 gcgctggact cgatcacgtt cgtggacgtc atggtggacg gggtgatctg cagacacggg 8280 gtgcccgagc agctactgag cgaccgcggc acgaacttca cgtccgagct agcgcgctcg 8340 ctctatcaga cgcttggcat caaaaagctg tttgggtcgg cgtaccaccc gcagacgcaa 8400 ggactggtcg agctgttcaa cggcacgctg ctgggcatgc tgaggatgtt tgtgcacgag 8460 tctcagaatg actgggacgt ctacttgccg cgtgtgttgt ttgcgtatgg gtcctcgtac 8520 catgaggccc tcggcgactc gccgttcttt agtctctacg gccgagaccc gaagctcacg 8580 ctggatttgg cctttatgaa caccggttcg gactggaagt cgagtgaagt ggcctcatac 8640 aggcgacagc tgtaccagtc actgcacgac tcgcggcgca tggttgagcg ccagctgatc 8700 aaggctcagg accgtcacga gagacggctg agagggcaga aagaggtcgt gttcgcagtg 8760 ggagatgctg tgtgggtgta ccagctcttc cgcgcgcgaa gaggggagcg gaagacgaag 8820 aagctcgcgt tcacttggca cagaccctac cgagtgctcg gccaagtcgg ggagaacgcg 8880 tacaggatcg acaccccgag ccatcccgac aaggtcgtga ccgtgaacgt gaatagactg 8940 aaaaggttca aggggcgatg gagccgaccc tttgtgggcg acgtgcccga aggtgtggac 9000 ggctcgcccg aggtcgaaga agaagggcct ctcgaagagg acgacttgcc ggagacgagc 9060 ttcgtggaac gcgtaaccat cggcggtgag gagacggcgt tcacgaacgc gggctgcctg 9120 tgatcaacat tgtggggaaa cgcgtcgaga agaaggaggt gcagtatttg gcgctgactg 9180 caacgtacga gacgttctgg ctgtcacgcg ctgcgctctc gcccgagtat gacgtgctga 9240 tcacggcgta tgagaacgcc atgcggagac ggaagggtct acctgaacta cggcgaagcg 9300 tgcggctaat ggaagccaac gccgtggtcg acgaagatga gctcctcttc tagcgttggg 9360 gtcgtgctcg acccacgcta ggaagatgga ggcggtaatt gtggatagct tcaaggggag 9420 gcagtgtgcc tcgaagctcg tgaggattgg atattgtgtt ttattgcttt acgggaactc 9480 ggcttggaga tgttgggaat gcggcgctgc tgtggacacg gaaacagaga cgacaagatg 9540 aaagaagact caagttgaat taattggaat tacgggaatt agcgtggcac atgcaggcgt 9600 ctgggggacg cagaaacgaa ggacgcctta ctcgtcgtca gcagcagggg cgagcgcggt 9660 cggcttgcct tcatcgtcct cgaaatcgga gaagtcgtcg gtcttgatgt cggagggcga 9720 gaacgtcgtg atcgacgtgg gctggtaaga gccgtccttg atcgctgggg ccaggatggc 9780 ctcggtttct tgggcaatct tgctgtcgat cagcacgtgc catgggccga cgtcctcatc 9840 tcccacccag tcggcgtttc tcggcgcgtc gctcttgatg tccatgcgga tgcgtgcgag 9900 cgcgtcgagg gagagacggt gctcggctgg ggcattcggg tcgagagcgc gcgtggactc 9960 gagcaggtgg cgtaggctgt gatagccata gtcgtcgatc agcgccgggt tgagagcgtt 10020 gtcgatgacg aactcgaagc gctccgagtc cgtgcggtag agcgaggcca ggtcttcggc 10080 gcacacgccg ttgtcggtgc gcttctcgcc ggagcccttg ccgccttgcc cgccgtacca 10140 ataccggtcg tcgtggccct cgagcagccg gtaaaagccg aagtagcccc aagtctcaat 10200 gcagagactg gtgaggcgga ggcgcgcgat gcccgctcgg agcttcgatt tgcggcggtt 10260 gtccgtgtcc ttcttgatcg tcaagggcgc gtgaacgccc agtgccagaa gagcgcgcgg 10320 aacagcatgt agaaacgcca gtgctcgcgg tagacctggg ggtactttac cgggtcgtac 10380 cagaggctgc ggtcgcacca cggataggcg acccgctacg gcatcttgcc ctcggcgacg 10440 cacttggcca gcacggcagc gatggcgtca cggacggctt gggcgcagct gggctgacgc 10500 gaagaatctc gtcgatgtca atgggctgga cctcgtcgtc ggtctcggcg cgagcctttt 10560 tgctggacgg cgtgctcgcg gggctgggcg acgccgcgcg tttgttgctg cggcggggcg 10620 ctttgccctt gcccttgccg gacttgggcg gcggcggcgg agagcgcgac ttgggcggac 10680 gtggcgacga cggaggatca gcgggagcgg cggaatcggt cgagggagga gcggaaggca 10740 gtggcggcag cacgaagatg ggaccgccga ggatcgggtc ttcctgctcc tcgagcacgg 10800 cgtcgacgac tgcctgtagg tgctcgagtc cctgggactg agggttcgcg gagagcacgc 10860 agcgcacgcg ctcccagaac gccgtcttga tggtgcgctg gtccgtcccg agagagtcat 10920 caagaagccc aatgatgagc tccttgattt cctcaatctc ctccgccgag aatgcgcagc 10980 gaagcttgga catcgtggcg agtggcgagt ggtgcgtggc gcgtggcaga ttctcaaatg 11040 agagattcgc cgaaagagcg gctgcatgct ctccaggagc ggtcctacta cgttcttgca 11100 gaacgttctg caaggagtgg actgcgatag cggcgtcggc aacttgccga agaacggacc 11160 tgatggccgt tggctgcggc aacggttggt tgcccccccc ccctgcattt tgcgaaactc 11220 ggcggcagca gctcatggac gattggccgc tggccgtcac gatactcgcg gacgtgcgtg 11280 actacttcga gaagggcgtg catccgatgg tgtgggcggc gctgggcgtt gccgcatggc 11340 acgtcattac gcccgtgttg aacgtgttgt gggtgtttgg ggcctcggtg cgcgagactg 11400 ggctcgtact ctacttcttc gggttcacct gcgtcgacag gtacatgtcg gcgataagga 11460 gctcgcgtgt cccagggctg gaagcgtcgg aatacgcgtg ggctgcgcta tctctactgg 11520 tggtggtgcc gattgctgtg ctgcgggagc acgagcagct tttcggcatg gtcggggaaa 11580 tgtggcatgc ttggtgtgtg gcgatacatc aaactgtgtt cttgttcctg ccggatgcag 11640 gacaactgat gctgcaggcc gcgcggcgtt acgcgtgtgc gctcggcgaa gcggctgtcg 11700 ctatggctgg ccgtgtaagt gatggcgtct atggcgtcta cgtgcagatt gcgctgtgtg 11760 tgtccgtcgt ggctcacgca cctcgcattg cgtatgacgt cctcgaagga ctgctgcacg 11820 ggtcaacggg ggtcgctgtg gtgctcggcg tgtggaacgc ctggtgcgga ttctcgctgg 11880 tgaccacgag ggtgagcggc gtgctgctgc tttgtgggct ttacagccat ctcgtacgac 11940 gctgccacgg gcgcgtgccg acgaaggcgc cgaagaaggt cgcaaggtcg gggttgggcg 12000 ctctgcgtga gcgcaaggac gcgagggagc gcgcagagaa ggcaagtctc aacaagctgc 12060 gtggcgtacg tcgtcggtcg gcggtggtac cgtcgaagcc ggtgacgaac gggccggagg 12120 tggccgtggt cgtcgacgag gcggacgggc aaggtccgac gtgccccgcg actgcgacga 12180 gtgaggacaa gggcgaggct ggccgaggac ggcagcctga agtcggggag agt 12233 // ID Gypsy-58_PIT-I repbase; DNA; PLN; 2966 BP. XX AC AATU01004468; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_PIT_; KW Gypsy-58_PIT-LTR; Gypsy-58_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2966 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004468; Positions 21458 18493. XX CC Positions [2185-2664] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 505..2964 FT /product="Gypsy-58_PIT-I_1p" FT /translation="MISTKAPLVPCPVKESAQPYHARPFGIPHAYLDTIKK FT EVARLERLGVIVCDSSSPWAALAFIIPKKDKTARFRTDFRRLNALIVRHPF FT PMPKITELLQGLERFVFVTSLDMNMGYYSIVLGERSSRVCCFVLPWGKFRY FT LRLPMGICTASDEFQRRMQRMLGDLPFVRVYLDDVLISTSTNFADHRNHIR FT TVFERFRTSGLQVNMNKSRFAALKTEYLGFRLTRDGIQPLPDKIKAIQQLA FT PPKTKRELRRFVGLVNYYRDMWPQRAHLLTPLTSLTSPRTPFRWTPACQTA FT FEQIKAVVGRAVTLHFPDFSLPFEVHTDASIFQLGGVVSQNGRPLAFFSRK FT LSSAQRKYAVMELELLSIVEVLREFRNILLGHRIIVHTDHKNLFFANFQSD FT RVNRWRLIVEEFASEIKYIKGENNVVADALSRLPLVEDGRETCFALEPCDD FT DFPLAFERIQSKQLRDEQLQQRLRDGQVETKQHGEFKIIYSTNRIVIPPAL FT QHHVTNWYHEQLKHPGMNRTYLTIRQHFTWMNMKRCIEEFVSRCEICQKWK FT RNKKKYGKLPVAEPVVEPWKVVCVDLIGPYTHAATGNKYSAMTMIDPATGW FT FEVHAITDKEAKTAAHILDNEWFCRYPRPECCIFDQGNEFTDAEFQEMLES FT YGVKPRPTTVKNPQANSVLERIHQVLGDMVRTSDLDANAWEQVLPSVAFAI FT RATVSTTKETTPAQLVFGRDMVMNTAFMTNWKRITDRKLRQVLRDNERKNS FT SRLQHTYRVGDLVLITKDKNRISKLDQPAEGPFKILQVNTNGTVQIQRSAY FT VEIINIRRLVPYRSVGEA" XX SQ Sequence 2966 BP; 728 A; 860 C; 741 G; 637 T; 0 other; tattgagctc aatccgtcgc tctctccaag gccatgtcgc tcattccgct caagaccacc 60 gtcaaggctc tcgatgagca ccggcgggac ctgttcgtca cgtaccgtgt gcgtacgaac 120 ttacacgacg ccaacgacca tgtgtcgctg aacattcgac acctcgacta cggcaacgga 180 gaagggtggt tgaactggcg caagcagttc gagtacatcc gcaagctgaa gggctggcaa 240 gaggctccag agctatacca gaatactcgc attctgctac gcggagcagc cttggttcgc 300 tttgaatccg ttaactccgc cgtcatgggc aacgaggacg tcgagcactt cgatgaaacc 360 cttcaacgta tgaccgcgat gtactttcct aaacgcccag cgagcaagac gccaagtatg 420 ccaaagtgaa cgtcgacgac tgcgttcctg cgcacctcac cgagccagag caagccgaac 480 ttcgccagct gctacttcag tttgatgatc tcaaccaagg caccattggt accatgcccg 540 gtaaaggaga gcgcgcagcc ataccatgct cgaccgtttg gcatcccaca tgcctatctt 600 gacacaatca agaaggaagt cgcacgactc gagcgactgg gagtcattgt ctgtgattca 660 agtagcccgt gggccgcact agcatttatc atcccgaaga aggacaaaac agcacgcttt 720 cggactgact tccggcgcct caacgcactc atcgttcgcc atccgttccc aatgcccaaa 780 atcaccgagt tgctacaagg tttggagcgc ttcgtcttcg ttacttcgct cgacatgaac 840 atgggctact actccatcgt tctgggtgaa cgatcctcgc gtgtctgctg cttcgttcta 900 ccatggggaa agtttcggta tctgcgactg cccatgggta tctgcacggc ctccgacgaa 960 tttcaacgcc gcatgcagcg catgcttggt gatcttccct tcgtccgcgt gtatctcgac 1020 gacgtgctta tcagcaccag cacgaacttc gccgaccatc gcaaccacat tcgcacggtg 1080 tttgaacgct ttcgtaccag tggcttgcaa gtcaacatga acaagagtcg ttttgctgct 1140 ctcaagaccg agtacctcgg atttcgcctt actcgcgatg ggattcagcc gctgccggac 1200 aaaatcaaag ccatccaaca gctcgctccg ccaaaaacca agcgtgaact tcgtcgattt 1260 gttggtctcg tcaactacta tcgcgatatg tggccgcagc gcgctcactt gttgacgcca 1320 ttgacgtcgt tgacgtcgcc gcgcacgcct ttccgctgga caccggcgtg ccaaactgct 1380 ttcgagcaaa tcaaggctgt ggtaggccgt gcggtgacgc tgcattttcc cgacttttca 1440 ctaccgttcg aggtgcacac ggacgccagc atcttccagc tggggggagt ggtaagccaa 1500 aatggcaggc cattagcttt cttcagcagg aagctgtcca gcgcccagcg caaatatgca 1560 gtgatggagc tcgagttact gtctatcgtg gaagtcttac gtgaatttcg caacatcctc 1620 ctgggacatc ggattatcgt gcacacagac cacaaaaacc ttttcttcgc aaacttccag 1680 tctgaccgag tcaatcgatg gcgtttgatc gtggaagaat ttgcctccga gatcaagtat 1740 atcaagggag aaaacaacgt cgtcgccgac gctctcagcc ggctacccct cgtggaagat 1800 ggaagagaga cttgcttcgc gcttgaacca tgtgatgatg atttcccact agcgtttgag 1860 cgtatccaaa gtaagcagct tcgtgatgaa cagctccagc agcgtctgcg agacggccaa 1920 gttgagacta aacagcatgg ggagttcaag atcatttatt ccaccaaccg cattgtgatt 1980 cctccggcgc tccaacacca cgtgaccaac tggtaccacg agcaactcaa acatccgggt 2040 atgaatcgca cgtatttgac gatccgccag catttcacct ggatgaacat gaaacgctgc 2100 atagaagagt tcgtgagtcg ctgtgaaata tgccagaagt ggaagcgcaa caagaagaaa 2160 tacggcaagt tacctgtggc agaacctgtt gtggaaccgt ggaaggtagt atgtgtcgac 2220 ctcatcgggc cctatacaca cgccgcaacc ggcaacaagt acagtgcaat gaccatgatt 2280 gatcctgcta caggctggtt cgaagtgcac gccatcacgg ataaggaggc caagaccgcc 2340 gcgcacattc tcgacaacga gtggttctgt agataccctc gtccagaatg ctgcatcttc 2400 gaccaaggca acgagtttac ggacgctgaa ttccaagaga tgctggagag ctatggagta 2460 aaacctcgtc cgactactgt caagaaccct caggccaatt ctgtgctaga gcgcattcac 2520 caagtcctcg gtgacatggt tcgcacctcg gacttggacg ccaacgcatg ggaacaagtg 2580 ctacctagcg tcgcctttgc cattcgcgcg acggtgtcca cgaccaagga gacaacgcct 2640 gcacagctcg tcttcggccg cgatatggtg atgaacacgg ccttcatgac aaactggaag 2700 cgcatcacag accgcaaact acgtcaggtt ctccgtgaca acgagcgtaa aaacagtagc 2760 cgccttcaac acacgtaccg cgtcggagat ctggtgctca ttaccaagga caagaatcgc 2820 atcagcaagc tggaccagcc ggcagaaggc ccgttcaaga tcctacaagt caataccaac 2880 ggcaccgtcc agatccagcg ctcggcgtat gttgaaatta tcaacattcg ccgcctcgtc 2940 ccgtatcgtt ccgttgggga agcgaa 2966 // ID Gypsy-45_PIT-I repbase; DNA; PLN; 4667 BP. XX AC AATU01003518; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_PIT_; KW Gypsy-45_PIT-LTR; Gypsy-45_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4667 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003518; Positions 51069 46403. XX CC Positions [3291-3608] - Integrase core CC 'ATCAC' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 35..1738 FT /product="Gypsy-45_PIT-I_1p" FT /translation="MQSSEARFDADGDAVMQNVQQPVFEFVQAPRLTDWSQ FT DAVVSWKKRWEQYVSIVRQRCTESGERLEVALRPVKTCVDPELLEVLCLYE FT LRKAVDEVTSEELVTLIDAKLGSVKNAQVPDLDDFFSRLLKIDLREDDIDA FT RVLKYYKDFATLYKENGLTKILGVGDPADGGYVDRTKLRCTVLIDNLEPKM FT LRDDVRRHVKYECREARRNDFTLFGIIKEKARAQHKYHVMAHDQKVKSNLS FT KKDNANDRNNNKPEARSASMKTANTQGATGSIRGGSGGAGGSVKQNFPKKE FT TLSPKTGCWHCQGPHWLRDCPAAGEDEKARAVEKMKEVRQATNGRVKKIGS FT APAPGETMVNNLLTIPFLADTGSEETYLPRQYLDELIGLGAVLNVMKLPRT FT EKKSAAGGNTVECREAVTLDLLLQTVAGPVHLSDVYCKVIKGPESDFILGN FT DMLKTLGIDVNEQLSQLASGDPVADKDPFDLGVPSMMPPTEVHVARSSALP FT SSPSPLFSSTERVSTRTCPDAGKERIYLSKHLELVGLCSGAGCKGWSAKRI FT SIDGRLPTGERGNRADCWHRC" FT CDS join(1581..2477,2481..3608) FT /product="Gypsy-45_PIT-I_2p" FT /translation="MLEKNGFIYRNILSLWACAAVPVAKVGRPNEFRLTVD FT YRPVNVVTVPIAGTGADLSSSSGNVAGAYGFAGFDMPSGFSQLPLDVDSRE FT PLSFITDEGVWTPCRVPQGAMDSPLHFHNQMNLAFEDMLRTNLLIWIDDIL FT LYAPSPVVFVAVLRLFLARARKLGLKLSVMKRFLFRKEAKWCGRVLSGVGV FT CHDPERLSGLRQLPLPGTAADLQQFLCATGWMRDSLIDFSRVMQPLHDKLE FT AVLKAVGRTKRLAAGAALQWDARDTAAFEDARNLLATSQTLHHPAQDAAIV FT LMSDASDGWGLVVTQVHDWVEGVPVADQQHELLVCKSGKFDDTARRWSIIE FT KEAFPIIWASRNLTYLLARGNGLRLYCDHKNLVYVFAPDQVVKSHVRGKLQ FT RWTFSLTGLQYQIEHIDGSANLGANLLSRWGLPSVEEGVLTKCKAITRSRT FT RETAVADTQMQRVHLRANGFVFPTLGEIQTVQQKHVSSAPVNVKRDDNGSL FT VVNDRPWIPEVEVALLQRILIVAHCGAQGHRGLEPMITTVKELFEIANLTQ FT VCRRFLSRCLLCKHVKGGNVIPRPWGPTYEATERNKLLHFDYLFLGDSMGA FT CKYVLVLKDNLTHFCELVACDSPTSVVAATALVDWWKRFGAPSVLMSDQGS FT HFKSELIAMICKKLDIDQNFVVAYAP" XX SQ Sequence 4667 BP; 1135 A; 1071 C; 1314 G; 1147 T; 0 other; aagttaactt tagtccattt aggaccgcga caagatgcaa agcagtgaag ctcgattcga 60 tgcggacgga gatgctgtga tgcaaaacgt tcagcaaccc gtgttcgagt ttgttcaagc 120 acccagattg acagactgga gtcaggacgc agttgtcagc tggaagaaga ggtgggaaca 180 atacgtgagt attgttcgcc agcgttgcac tgagagtggg gaaagactgg aagttgctct 240 gcgtccggtc aagacttgtg ttgacccgga actgctcgaa gtactctgcc tttacgaact 300 ccggaaggct gtcgacgagg tgacgagtga agaattggtc accctgatcg acgctaaact 360 cgggtctgtt aagaacgccc aagtcccaga cttagacgat tttttttcac gactgttgaa 420 gatcgacctc cgagaggatg acattgacgc ccgagtactt aaatactaca aggacttcgc 480 tacgctctat aaggagaatg gtcttacgaa gattcttggt gtgggtgatc ctgccgatgg 540 tgggtacgtt gaccgaacga aactacggtg cactgttctc atcgataact tggagccgaa 600 gatgcttcga gacgacgtgc gtcgccacgt aaagtacgaa tgtcgtgaag cgaggcgcaa 660 cgacttcaca ctttttggga ttattaagga gaaagcccgt gcacagcata agtaccatgt 720 aatggcacat gatcagaagg tcaagtcgaa cttgtccaag aaggataatg cgaatgaccg 780 caacaacaac aaacctgaag ccagatcagc aagtatgaag acagcaaata cgcagggtgc 840 cactggcagt atacgcggtg gttctggtgg tgctggcggt agtgtgaagc agaattttcc 900 caagaaagaa acactttcac cgaagacggg ctgttggcac tgccagggac ctcattggtt 960 gagggattgt ccagcggcgg gcgaagacga gaaagctcga gccgtggaga agatgaagga 1020 ggttcgtcaa gcgacaaatg gacgtgtcaa gaagatcgga tcggcacctg cgccgggcga 1080 aacaatggtt aataaccttt tgacgatccc gttccttgct gatacagggt cggaggagac 1140 atacctacct cgacagtact tagatgagtt gattggactt ggagcagttc tgaacgtgat 1200 gaaattacct cgcacagaga aaaagagtgc ggcaggagga aatacagtgg agtgtcgtga 1260 agcagtcacg ctggatctac tgttgcagac tgttgcaggt cccgtacact tgtctgatgt 1320 gtactgcaaa gtgataaaag gccctgagtc agatttcatc cttggaaatg acatgttgaa 1380 aacgcttggc attgacgtca atgagcagct ttcacaacta gcatctggcg atcctgttgc 1440 ggacaaagac ccgttcgatt taggtgtccc atccatgatg cccccaactg aggtacacgt 1500 agccagaagc tcagccttac cgagctcgcc ctcgccgtta ttctccagca cagagcgcgt 1560 ttctacgaga acatgtccag atgctggaaa agaacggatt tatctatcga aacatcttga 1620 gcttgtgggc ttgtgcagcg gtgccggttg caaaggttgg tcggccaaac gaatttcgat 1680 tgacggtcga ttaccgaccg gtgaacgtgg taaccgtgcc gattgctggc acaggtgctg 1740 atctttcgtc gtcctctggg aacgttgcag gggcttacgg attcgcaggg tttgacatgc 1800 caagtgggtt ttctcagctg ccgcttgatg tagacagtag ggagcctttg agtttcatta 1860 cggacgaagg agtatggaca ccatgtcgtg ttcctcaagg tgctatggat tctcctttgc 1920 atttccacaa tcagatgaac ttagcatttg aggacatgtt gcgaacgaat ctgttgatct 1980 ggattgacga tattttgctg tacgcgcctt caccggtagt tttcgtcgct gtgttgaggc 2040 tgtttttggc tcgtgcacgc aagcttggat tgaaactcag tgtgatgaaa cgttttctgt 2100 ttcggaagga ggctaagtgg tgcggccgag ttctcagtgg tgttggagtt tgtcatgacc 2160 cagaacggct tagtggcctc cgacaactcc ctctgcccgg tactgctgcg gatttacaac 2220 agttcctttg tgcaaccgga tggatgcgtg actctcttat agatttcagc cgggtgatgc 2280 agcctttgca tgacaagttg gaagctgtgt tgaaagcagt tggtcggacg aaacgacttg 2340 ccgcaggtgc ggctctccaa tgggatgctc gtgatacagc tgcatttgaa gatgcacgaa 2400 acctacttgc tacgtctcaa acactccatc acccggccca ggatgcggca atcgtactca 2460 tgtcggacgc ttccgactga ggctggggac tagtagtcac gcaggtccat gattgggttg 2520 agggtgttcc ggtggcggat caacagcacg aactgctcgt atgcaagagc gggaagtttg 2580 atgacacggc gaggcgctgg agtatcattg aaaaggaagc tttccccatc atttgggcgt 2640 ctcgcaacct gacctacctg ttagctcgtg gcaacgggct cagactctac tgcgatcaca 2700 agaacctcgt gtacgtgttc gctcctgatc aagtggtgaa gagccatgtg cgtggaaaac 2760 ttcaacgctg gaccttctcg ttgacagggt tgcagtatca gattgagcat atcgatggat 2820 ctgccaattt aggggccaat ttactatcgc ggtgggggct tccttcagtg gaggagggag 2880 tgctaaccaa gtgcaaagct atcaccagaa gcaggactcg ggagactgct gtagctgaca 2940 ctcaaatgca gcgtgtacac ctgcgagcaa acggatttgt gtttcctact ctgggcgaga 3000 tccagacagt gcagcaaaag catgtcagca gtgcacccgt gaacgtaaag cgtgacgaca 3060 atggatccct ggttgttaac gatcgaccgt ggatacctga agttgaagtg gcactactgc 3120 agcgaatttt gatcgtcgct cactgtggag cccagggcca cagaggatta gagcccatga 3180 tcacaacagt gaaggagctg ttcgagatcg cgaacctcac tcaagtttgc cgccggtttt 3240 tgagtcgatg tttgctttgc aagcacgtga aggggggaaa cgtcatccct cgcccgtggg 3300 gacccaccta cgaggctaca gagcgaaaca aactactaca cttcgattat ctctttctcg 3360 gggacagcat gggtgcgtgt aagtacgttc ttgtactgaa ggacaatctc acccactttt 3420 gcgaactggt ggcctgtgat tcacctacaa gtgtggtggc ggctacagct ttagtcgatt 3480 ggtggaaacg ttttggtgct ccatcggtgt tgatgtcaga ccagggcagc cacttcaaga 3540 gcgagctgat tgctatgatt tgcaagaaat tagacattga ccagaacttt gtcgtggcat 3600 atgcaccata gattaatgga acggttgaat gtctaaaccg cgacgtactc caaattctac 3660 gcgtgttatt gatggagttt actctagaca ctcatgagtg ggtctacatc ttgcctctcg 3720 tgcagggaaa tctcaaccat actcctgtgc ggtcgctcgg cgacaaagcc ccgagtgaac 3780 tgtttacggg actgccacgc ccgactccat ttgagcctat cctactggaa cgaggtcagc 3840 aagttgaagt gttggagact tcggcgttgc ctgcagaacg ccttgaccat ctgcggacca 3900 gtttggccgg tttgcacaag gaggttgtgg atcgacgtga gaagcgtcgc cttcagaata 3960 tggctcagtc caaggggact gagtgcaact tcagcgtggg cgattttgtg ctatggtcac 4020 gcatcgactt aaggattgag gtggataaac tgctagcacg ttgggtagga ccatttgaag 4080 tcgtggagac ggccccccac tccttcacga tccgtcacct cgtgacgatc aaacgttacg 4140 tcgtgcatgg atcgcgtctt aagttctacg ctgactcaag tttggaagta agtgaagaac 4200 tactagctca tgtaggcaac caaggtatgc tacttgtggt tgagagtttg aaagaacgcc 4260 ggaagaacag aggcgtatgg cagcttctcg tgtcctggga gggtctacag gacgaagaag 4320 actcgtggga gtctctggaa gcgctacaaa agaacgttcc gtcacgtgtg ggtgaatatg 4380 ttcgttcctg tggtgacaat gtgcttgtac gtgcctacgc tacactcgtg catgctggat 4440 ccaactaaat cggctacctg gtaacgctac ggaccaactt caacgtgttg aagtgcaact 4500 tgactggtaa cgtcgcctcg tctcagaaat ggcctgtctc tcctcgcgtg gtgacagatt 4560 tctgtcaggc ggtactttct attggatttt aaacggtctt ttattcgggt ccagactaca 4620 tgtatacatc tacatacttc ggaagtggtt gtcgtcttgg gaggcag 4667 // ID Copia-5_PSo-LTR repbase; DNA; PLN; 206 BP. XX AC AAQY01000043; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PSo_; KW Copia-5_PSo-I; Copia-5_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-206 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000043; Positions 32562 32357. XX SQ Sequence 206 BP; 72 A; 40 C; 50 G; 44 T; 0 other; tgaaatgaag taagaatcaa aggatatgtt ttagggcatc tgattggata atacgaaggg 60 cattaagtgc cattcaaagg gaaagaagcc agcgctgctg gcagcaatat gataagccga 120 gggatgcgaa ggaatcaggc tttcattgcc attacttccg aaactgaagg caactacaca 180 actacctaca attgctgcac gcaaca 206 // ID Copia-20_PIT-I repbase; DNA; PLN; 4884 BP. XX AC AATU01000550; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-20_PIT_; KW Copia-20_PIT-LTR; Copia-20_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4884 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000550; Positions 12571 17454. XX CC Positions [1676-2053] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 50..2053 FT /product="Copia-20_PIT-I_2p" FT /translation="MSRLTWKESWNFDSRKPDFTAWQIRIQTLLEAEGVWD FT IVSKELHFSERWSHRRREDFIARDKKALHLLISSLDDPTVRALGKYKRSWL FT AYDLMERVNAGKGTINIFRARKDFQNLKYNDGEDMQAHINALEDKAEALAR FT LRRPVDDEEKVMQMLGSLPDTWKNLVMVCQNEKGLTWEDLQAKLLLESDTR FT KDIKETTDIQAHLTEGSQQLPFPAPSLSSKAIAHFGQGPHRRSGGRLPFRS FT QLKQPSGRPYQRNETDKECHYCGKQGHSIRDCRMKARHDHERGANTQKPAA FT ANMMVATEEEEEALDSYDVLAVAVAMDHVYIKGNIQATALQAAVASKDPTL FT SRELWVLDSGCTQHMCYDKSYFTELKTVSQRVHLGDNNHVEVDGIGRVVLD FT FKGEDGSNVKLTLSKCFYLPKLSRNLLSVRCLREKGVKSDFSTYVDRAIIH FT KGKMRIKSAENRFNRLYVFKTSCINTLTESAYVRVVNQPISLWHSPCGHLG FT YQNIARLVARGKAHGLQVAKRDLVEFPVCDVCERSNQQRASFKSTYTKHAT FT SLNELVYTDIKGPIEVSTFGNKRYVLLVVDEFSGFVTTYLLETKAEALRHF FT KQYVISAETKHNCPVQAVSSDNGGEFTSPEWVNFVKSKVLHDEQQHHIPQS FT KMVVPKCDFVFFFERFELY" FT CDS 2425..4023 FT /product="Copia-20_PIT-I_1p" FT /translation="MELKRLKLDRLAKLHHLDLIQPSKLAQSIPDLVFYAE FT PIEELNSYDKEIQQLDSFLDEFNVDELRDEQGNLPDVSCYVGQQVNNKISI FT LELPTAGSEPQVLTMCAADRLSEKQKQAELMVATENIANKNENSKINSMAT FT SVEPKSYNEAMTCSESLHWRKAIDKEGRSLIAHDTWKLVKLPKGKRALTSK FT LIFKIKYDVQGNVERYKARLVIRGYEQVKYVDYDEISAPVIRLESLRMLLA FT LVAINDWECHQTDVDTAFLNGEMTEEVYMLQPEGLVVKGKENLVCLLTKSL FT YGLKQAPRAWHKKLTNFLKTKGYVKLNSDACIYVRTGDHALSIIGIYVDDL FT LLIADTTSGVEAIKSMLAEAFKCKDMGEVHLILGLRVQRDRSSKTLSIDQT FT SYAKSVIERFNLTQMNPCKTPCDPGTVLSKEDSPKNDDEREQMKAKDYRGL FT VGSLMYLMTGSRPDIAFGIQCVSKYLNDPGIPHWNAAKRILRYVKGTIGYG FT LVIDGRNRNGLQLTAYVDSDYAKTPTRGDRYLDTLCK" XX SQ Sequence 4884 BP; 1463 A; 1093 C; 1235 G; 1093 T; 0 other; aaaggttata agcccaactt cgccaggaag caacagtcgg tcacgaaaga tgtcgcgcct 60 cacctggaag gagtcgtgga atttcgactc gcgtaagcct gattttactg catggcaaat 120 ccgcatccag actctgctgg aagctgaagg tgtctgggat attgtatcta aagaactaca 180 tttcagtgag aggtggagtc accgcaggcg tgaagacttt attgctagag acaaaaaggc 240 acttcatctt ctcatcagct ctttggatga cccaacagtg agagcgttgg ggaagtacaa 300 gaggtcgtgg ctggcgtatg atctcatgga gcgtgtaaat gctggaaaag gtactatcaa 360 catctttcga gcaagaaaag actttcagaa tcttaaatac aacgacggtg aagacatgca 420 agctcatatc aatgcactag aagacaaagc agaagcactt gccaggcttc gcagacccgt 480 tgatgacgaa gaaaaggtga tgcagatgct tggatcgcta ccggatacct ggaagaacct 540 agtgatggtg tgtcagaacg aaaaaggatt gacgtgggaa gaccttcaag ccaagttatt 600 gctggagtcg gacacccgca aagacatcaa agaaacaacg gacattcaag cgcacctgac 660 cgaaggaagc caacaattgc cgtttccagc accgagtttg agctccaagg cgatcgcaca 720 ttttggacag ggaccacatc gccgttccgg tggtcgcctg ccatttcgca gtcaactgaa 780 gcagccaagt ggtcgcccat accagcgaaa cgagacagac aaagaatgcc attattgcgg 840 aaagcaaggg cacagcattc gcgactgccg catgaaagca agacacgacc atgagcgcgg 900 tgctaataca cagaagcctg cagccgcaaa catgatggtc gcgacggaag aagaagaaga 960 agcactggac agctacgacg tccttgcagt tgctgtggcg atggatcatg tatacattaa 1020 aggcaacata caagctacag cacttcaagc agccgtagcc tctaaggatc caacattgtc 1080 tcgtgaacta tgggtgctag actctgggtg tacgcagcac atgtgctacg acaaaagtta 1140 ctttacggag cttaaaacag tatcgcagag agttcatttg ggagacaaca atcacgtcga 1200 agtggatggt attggaagag tagtgttaga cttcaagggt gaagacggaa gtaacgtgaa 1260 gctgacgcta tcaaaatgtt tttacctgcc caaattatcg agaaatctgc ttagtgtgcg 1320 ctgcctccgt gagaagggcg tcaaatcaga cttcagcacg tacgtcgatc gagccattat 1380 tcacaaagga aaaatgcgaa ttaagtcagc tgaaaaccgg ttcaacagac tctacgtgtt 1440 taagaccagc tgcatcaata cactcactga atctgcttac gttagagttg taaatcaacc 1500 gatcagtctt tggcattctc catgtgggca cctaggttac cagaatattg cgagactggt 1560 agccagaggt aaagcacatg gacttcaagt ggcaaaacga gacttagttg aatttcctgt 1620 ttgtgacgtc tgcgagcgat caaaccaaca acgagcgtcg tttaagtcaa cctacacaaa 1680 acatgcaact tcactaaatg agctggtgta cacagacatt aaaggaccga ttgaagtctc 1740 aacatttgga aacaaacgat acgttctctt ggttgttgat gagttttctg ggtttgtgac 1800 gacgtatctc cttgagacca aggcagaagc tcttcgtcat tttaagcaat acgtgatatc 1860 tgctgagaca aaacacaatt gtccagtgca agcggtgagc tcagacaatg gtggcgagtt 1920 tacgtctcct gagtgggtaa attttgtgaa gtcaaaggta ttgcacgacg aacaacaaca 1980 ccatataccc cagagcaaaa tggtagtgcc gaagtgcgat ttcgtgttct ttttcgaaag 2040 gttcgagctc tactgatcga ttcacagcta ccaaagcaat tttggggtga agcacttctg 2100 acagcaacac tacttggcaa cattagtcct cttagacgag cggaagtcac gccgtatgag 2160 cgatggcacc tacgagaacc tgattacagc aacttgcgtg tatttggctc tctagcttac 2220 acgtacgtat cggcaacaca tcctaagcga ctggaactga cagcaacacc gggtacccgt 2280 aagactctcg ataatcgcag tgttcgaggg atttttgtcg ggtatgcaga caaccgaaaa 2340 gcgtggcgtg tattgcattg cggtactaat acagtcgtag ctacctgtca tgctacgttt 2400 gatgaatcta actcctacgc tgcaatggag ctaaagcgac tgaaattaga cagacttgca 2460 aaactgcatc atctcgatct cattcaaccc tccaaattgg cccagtcgat tccagactta 2520 gtcttctacg cagaacctat cgaggagctg aacagctatg acaaagagat tcaacagctt 2580 gactcctttc ttgacgagtt taatgtagat gaactgcgtg acgagcaggg aaatctaccg 2640 gatgtgagct gctacgtggg ccaacaggtc aacaataaaa tctctatact tgagctccct 2700 actgctggat ctgaaccaca agtgcttacc atgtgcgctg ccgatcgact ctctgagaag 2760 cagaagcagg cagaactgat ggtggcaacc gaaaatatag caaacaagaa tgaaaacagc 2820 aagatcaaca gcatggctac tagtgttgag ccgaagtcat acaatgaagc aatgacttgc 2880 agcgaatcac tgcattggcg gaaggcgatt gataaagaag gtagatcact catagctcac 2940 gacacatgga agctggtaaa gctaccaaaa gggaaacgtg cgcttacttc gaaattgata 3000 tttaagatca agtacgacgt tcaaggcaat gtcgaacgct acaaagcaag actggtcatt 3060 cgtggatatg agcaagttaa atatgtagac tatgacgaaa tatctgctcc tgtcattaga 3120 ctggaatctc ttcgaatgct actcgcgtta gtggcaatca acgactggga atgtcatcag 3180 acagacgtgg ataccgcgtt tctaaacggt gaaatgactg aagaagttta catgctacag 3240 cccgaaggcc ttgtggtcaa aggaaaagag aacctcgtgt gtctactgac aaagtcactt 3300 tatggtctaa agcaagcacc gcgagcgtgg cacaagaagt taacgaactt tctaaagaca 3360 aaaggctatg tgaaactcaa tagtgatgca tgcatttacg tgcgtacagg cgaccatgcc 3420 ttatccatca ttggcattta cgtggacgat ttactcttga tagcagacac gacaagtgga 3480 gtagaagcca ttaaaagcat gttagcagaa gcatttaaat gcaaagacat gggtgaagtg 3540 catctcatcc tggggctacg cgtgcagcga gatcgatcgt cgaagacact cagcatcgat 3600 caaacttcct acgccaagag tgttattgag cggtttaacc tgacacagat gaatccgtgc 3660 aaaactccct gtgacccagg tactgtactc tcaaaagagg acagtcctaa gaatgatgac 3720 gagcgtgaac aaatgaaagc caaagactac cgaggactcg tgggttcatt gatgtatttg 3780 atgacgggta gcagacccga cattgcgttc ggaattcagt gtgtgagcaa gtacttgaat 3840 gatccaggca ttccgcactg gaatgcagca aagcgaatac tacgctacgt gaaaggcacc 3900 attggatacg gacttgtcat tgatggaaga aatcgtaatg gcctgcagct aacagcgtac 3960 gttgactccg attatgcaaa gacaccgaca cgcggagatc ggtatctgga tacgttatgc 4020 aagtaggaaa ttgtgcaatt acgtactcat gcaaaagcca acggactgtg gcgttatcgt 4080 ctactgaagc caagtatatg gcactggcac acggagctaa agaggtgata ttcttacgag 4140 aactactggg tgagttgaac atgccgcaag acaccacggt ggtatttgtt gataaccagt 4200 cagctatcgt catggccttg aatcccattc accaccagcg taccaagcac attgacacca 4260 gatatcattt tatccgcgaa cgcattgcac tgaaagactt agagattgaa tacgtaaata 4320 ctaaggaaaa tgtgtcagac ttactaacaa aagctgtgac tacagatgta cttcaaacct 4380 tacgtggccg tctcggtgtt cgtgagacgc atcccgaagt aaagtctacg agccttggta 4440 agagaaaaag agacggtaag tataactagc gacagcatgc gaggcttttt tggacaagct 4500 gggcatgggc tggctaagct tgaaagcaac agcgtgtgag ctctttgacg agtttaacac 4560 ggcctggctc gagcgacagc acacggggtt ctaggacgag ctgggtgtgg tctggctccg 4620 gatcgagcaa cggcacgcgg ggctctcgga cgagctgggc gtggtctggc tcacggcgca 4680 gaaccggcat gcggaggact caaagcgagt agcccatggg ccgactgcag gtgatgacga 4740 cggagcacgg agtttctgaa aaactggatg ctggccggtc acgaggatta ctgagggcgc 4800 caacacaacc tcgtaacaca ccgtgacttt tgcaattacg ggggagcggt caacacagtc 4860 acggcactgt agaccacggg ggag 4884 // ID Copia6-LTR_VC repbase; DNA; PLN; 194 BP. XX AC scaffold_13; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia6-VC; KW Copia6-I_VC; Copia6-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-194 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 129-129 (2008). XX DR Genome; scaffold_13; Positions 520061 520254. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 194 BP; 43 A; 41 C; 43 G; 67 T; 0 other; tgttggaaag tgctcttagg tacactcagg cttgacactt cggtagtttg attagttgcc 60 gttatcctaa tacgacatcg gatcaggatt ggctacggta tgcttatata ctgcttgcgt 120 atccattctc tctctctcct tgtgtaacga tatgagcgag tgatgtgttc actgaaggac 180 tcttatctct aaca 194 // ID Gypsy-10_PIT-LTR repbase; DNA; PLN; 188 BP. XX AC AATU01002354; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PIT_; KW Gypsy-10_PIT-I; Gypsy-10_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-188 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002354; Positions 83331 83144. XX SQ Sequence 188 BP; 45 A; 54 C; 43 G; 46 T; 0 other; tgtgacgggc ccatcgtcac acatcgccat cgcatccaat gcgatggcca atcagcttgt 60 agaacacatc tactggttgg cgtggtccga gaccacgccg ttaactttca atacatctca 120 gagtctaatt tgcctgcttc ctcacgcaca gtgtacgtaa ggtaacgggt tgctgaaagc 180 ccgttaca 188 // ID Copia-6_PR-I repbase; DNA; PLN; 4898 BP. XX AC AAQX01001127; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PR_; KW Copia-6_PR-LTR; Copia-6_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4898 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001127; Positions 63774 58877. XX CC Positions [1706-2215] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 51..992 FT /product="Copia-6_PR-I_2p" FT /translation="MSTSADTKKETKEEKKAAHPPFDGKDFEVWFERMKLK FT LERKGMWKYCVKEIEEPEESKQNEHDAWMKDSARAKELLYDGMTDKIMKTV FT KFEPTAFRVVERLKQRFVGKTYFKYAAEMTQLRKLRLQENGNMPDHLGEVR FT RLIDRIALLGKPLDEYEKPAILIGTLPDDYDNVVETFLASHVPRDVNDPPN FT YDQLEHALELAYDRRQGRKLNEGNEDQALFGGSGRGRGRGRGRGRGSDRGR FT GGRSGGRGRGRGFGRGGGRGGSQGAGRGREGQVTSKERCFHCGEQSHQVRD FT CPHLGRRQVVPADPSHLKSKPR" FT CDS 887..4888 FT /product="Copia-6_PR-I_1p" FT /translation="MFSLRRAIAPSARLPALRQTPSGARGSEPPQKQAKVE FT GAQGKRAAKNQYTQDESDESAYVVSALIKQPPNVQKFASKRWYLDSGATSH FT LTNQKIDFISFTAMSALVRVGGENWLNVAGIGTVKKEIQTTSGWRTLVLRG FT VRYVPELQCSLFSVRRQTAQTLPADEKVRVHFDDDEFAKVKFEQGSAKAHV FT DRTNLYCLELESPVNSALVVATDEDYKVQLWHTRLGHPGRTIFNALFRHAD FT WPLLAVDLRIRQDFSCEACVRGKMTRKSFHSVQSSNRDWLIGERAHVDVWG FT PYPVASYSGMRYFALFVDEASRFSTLFLMKERTNVYAKFQFYYERVKTQLK FT IRMKELRCDNARELLALGEKCKRTYGMECSLTVKHTPEQNGVAERMIRTVT FT ERMRCLLEHFGLPKQMWAEAAATAAYCVNIVPNKRKGMQVPYAVWFRETPA FT YSRLRTFGCAVLAYVDKVERKKMDSRAKEAVFVGYSRERRGYRLLDSKTNK FT AFYSHTAVFYEDKPGRILLKDGTEAPTVPTSEYLDINATTMQNIPALLEEA FT QAEEMPDSECRTGGASGGAVPAEVADESRAQQISGASRETTISRKRARASG FT ISAPRKRVRIDEKVAPGAEAAPVKENAPRQKKRKRGKRKKPSCERCDTPNE FT ESDGPGSRRCATPAVEQDDKETEGQQSSTRLPGAIATTSNETLDADGDSPM FT GDLTVSEQRDAPRSKASKTGCREYRTKSGRVSKPPRWLSDTIHLAYGDSIE FT KKRSAGSSSWEMKRDEMQFEIAKEKAMDWWQDLCCLSASMINEPETLDDAM FT NSEYSEEWRSAADIEYHALKKNDTWKLVPRRKGMKVLGNRWIFRVKYLPNG FT KIERFKARLVVKGFMQVYGVDYLEVYSPVVRLETLRMLLTLAAIWDYEVDQ FT MDVTTAFLNGPIDREVYMEQPKGYEETGKEDWVCMLDKSLYGLKQAPRVWF FT RLLKDHLEKQGFTIMNCEACVAVKDIDGELVFISIYVDDLILFAPNKKLMK FT ELKQMLHVRFEMKDLGPIHYILGWEIMRNRMERTIFINQRKYADKVLHRFG FT MERCNGCKVPSTPDLKLSKVMRPTTKEEKGLMSGKPYRAVIGSLMYLMLGT FT RPDLTYLVRECSQFLENPGILHWRAAKRGLRYLKETQDWGLQLGGVQWSQQ FT ELNDHLKAFADADFANRVDDRKSIAGYLTQFCGSTISWASQTERTVALHTT FT EAEYMALSLLVQEVIHLRQMLKELKVKQDNPSDVFVDNESARKLANNPEFH FT SRTKHIDVRHHFVRERVELNEITVKRVAGTDNVADAFTKPLLRVKLEQHRA FT SMGLISQGQYETTKNLCNVDNQ" XX SQ Sequence 4898 BP; 1366 A; 1014 C; 1463 G; 1055 T; 0 other; agtggttatg agcccaatac tgcgttggta acttcccgac ggtgaagatc atgagtacaa 60 gtgcagacac gaagaaagag acgaaggaag agaagaaggc cgctcaccca ccgttcgatg 120 gcaaggactt cgaggtgtgg ttcgagcgca tgaagttgaa gctggaacgc aagggaatgt 180 ggaagtactg cgtgaaggag atcgaggagc cggaggagtc gaagcagaac gagcacgacg 240 cgtggatgaa ggattctgcg cgcgctaagg agctactcta tgacggaatg acggacaaga 300 taatgaaaac ggtgaagttt gagccgactg cgttccgtgt agtggagaga ctgaagcaga 360 gattcgtcgg gaaaacgtat ttcaagtatg cagcggagat gacacagctg aggaagctcc 420 gactccagga gaacgggaat atgcccgatc atttgggtga agtgcgaaga ttaattgatc 480 gaattgctct attgggtaaa cctcttgatg agtatgagaa gcctgcgatt ttgatcggca 540 cactgcctga cgattacgat aacgtggtgg aaacatttct ggcaagtcac gtgcctcgag 600 atgtaaatga ccctcccaac tatgatcaat tggagcatgc attggagctc gcgtatgatc 660 ggcgccaagg acgaaagcta aatgaaggca acgaagatca agccttgttt ggaggatctg 720 gtagaggtcg gggccgaggt cgtggtcgcg gtcgtggctc tgatcgtggc cgcggtggcc 780 gcagtggagg acgtggccga ggcagaggtt ttggtcgtgg tggtggtcga ggaggtagcc 840 aaggagctgg acgcggacgt gaaggtcaag tcaccagtaa agaaagatgt tttcattgcg 900 gagagcaatc gcaccaagtg cgagactgcc cgcacttagg cagacgccaa gtggtgcccg 960 cggatccgag ccacctcaaa agcaagccaa ggtagaagga gcgcagggga agcgagctgc 1020 aaagaaccag tatactcagg atgagagtga tgaatcggca tatgtggtta gtgctctcat 1080 taagcagcct cccaacgtac agaagtttgc aagcaagcgc tggtacttgg actcgggagc 1140 cacaagccat ttgactaacc agaaaattga ttttatttcg ttcacggcca tgagtgcatt 1200 ggtgagagtt ggtggtgaga actggttgaa tgtagctgga attggcaccg tgaaaaagga 1260 gatccagact acgagtgggt ggcggacgtt agtactgcgt ggagtacgct atgtaccaga 1320 actgcaatgt agtttgttct cagtgcggcg acaaaccgca caaaccctgc ccgctgatga 1380 gaaggttcga gttcactttg atgacgatga attcgcaaag gtgaaatttg aacaaggaag 1440 tgcgaaggca catgtcgaca gaaccaatct ttattgctta gagctggaaa gtcctgtgaa 1500 ctccgcattg gtcgtcgcca cggatgaaga ctacaaggtg cagctgtggc acacgcgcct 1560 tggtcaccca ggacggacaa tattcaacgc actatttcga catgcagatt ggccgttgtt 1620 agctgtggat ctgaggatca gacaagattt cagctgtgaa gcatgtgtga gaggcaagat 1680 gacgagaaag agttttcact cggtgcagag ttcgaatcgt gactggttaa ttggagaacg 1740 agcacacgtg gatgtttggg ggccgtatcc agtggcgtca tactcgggca tgcgctactt 1800 tgctctcttc gtcgatgagg cgtctcgctt ctcgactttg tttctgatga aagagcgcac 1860 caacgtctac gcaaagttcc agttctacta tgagcgagta aaaacacaat tgaaaatccg 1920 aatgaaagag cttcgttgtg ataatgctcg cgaactacta gcgctcggtg aaaagtgcaa 1980 acgcacgtac ggaatggagt gctcgctgac ggtgaagcat accccagagc aaaacggagt 2040 tgctgaacga atgattcgca cggtgactga gaggatgagg tgcttgctgg agcatttcgg 2100 actgcccaag cagatgtggg cggaggccgc tgccaccgca gcgtattgtg taaacatagt 2160 gccgaacaag agaaaaggaa tgcaagtccc gtatgcagtg tggttcagag agacacctgc 2220 gtattcgaga cttcggacat tcggttgtgc tgtgttagct tacgttgaca aagttgagcg 2280 caagaaaatg gattcacgag caaaagaagc tgtattcgtt ggttattctc gtgagcgaag 2340 aggctatcgg ttgctggaca gcaagacgaa caaagcgttc tacagccaca cagcggtctt 2400 ctatgaagat aaacctggac gaatcctgtt gaaggatggt acagaggcac caactgtccc 2460 cacgtcggag tatttggaca ttaatgctac gacgatgcag aatatcccag ctttgctgga 2520 ggaagctcaa gctgaggaga tgcctgactc agagtgcaga actggtgggg ctagtggagg 2580 tgcagtgcca gctgaggttg cagatgaaag tcgtgcacag cagattagtg gtgcttctcg 2640 tgagactact atatcacgaa aaagagcgcg agcgagtggc atctcggctc cgcgcaaaag 2700 agtccgcata gacgaaaagg tggcaccagg tgcagaagca gcaccggtga aggaaaatgc 2760 tcctcgtcag aagaaaagaa aaagagggaa aagaaagaaa ccaagttgtg aacggtgcga 2820 tacaccaaat gaagagtctg atggtccggg cagtaggcgg tgtgcgacac cggctgtaga 2880 gcaagatgat aaggagactg aagggcagca atcttccact cgtttgcctg gtgcgatagc 2940 gaccaccagc aacgagacgc tggatgctga tggtgactcg ccgatggggg accttaccgt 3000 ctctgagcag cgagatgcac ctcgcagtaa ggcatcgaag actggctgca gagaataccg 3060 gacgaagagt ggccgagtgt cgaagccacc acggtggcta agcgacacca ttcatcttgc 3120 atacggagac tcaattgaga agaagaggtc agctggttca tcaagctggg agatgaaacg 3180 tgatgaaatg cagtttgaaa tcgcaaaaga gaaagcaatg gattggtggc aagacttatg 3240 ttgtctttcg gccagtatga ttaatgaacc agagaccctt gatgatgcaa tgaatagtga 3300 atactcagag gagtggcgat cagcagcaga catcgagtac catgcattga agaaaaatga 3360 cacatggaag ctggtccctc gacggaaagg gatgaaggtg ctcggaaacc ggtggatatt 3420 tcgtgtaaag tatcttccta atggcaaaat tgagaggttc aaagcccgac tggtggtcaa 3480 gggctttatg caggtctatg gcgtggacta ccttgaagta tactcacctg tggtccgctt 3540 ggagactctg cggatgttgc tgacgctggc tgcaatctgg gactacgaag tcgaccagat 3600 ggacgtgacg accgcattct tgaatggccc tatcgataga gaggtgtaca tggagcaacc 3660 aaaggggtac gaggaaacag gaaaagagga ctgggtttgc atgctggata aaagcctgta 3720 tggcttaaag caagcccctc gtgtttggtt tcgcctactg aaagaccacc tagagaagca 3780 aggctttaca ataatgaatt gtgaggcttg tgttgctgtg aaagatattg atggtgagct 3840 ggtgtttatc tccatctatg tggatgattt gattctcttc gcccccaaca agaagttgat 3900 gaaggagctg aagcagatgc ttcacgtgcg tttcgagatg aaggacttgg ggccgattca 3960 ctacatattg ggctgggaga taatgcggaa cagaatggag cggacaattt tcatcaacca 4020 gcgcaagtat gctgacaaag tattgcatcg atttggaatg gaaagatgca atggctgcaa 4080 agtgccaagc acgcctgact tgaagctatc gaaggtcatg cgtccgacca cgaaagagga 4140 gaagggcttg atgagtggaa agccgtaccg ggctgtaatt ggcagtctaa tgtacttgat 4200 gttgggcaca cgccctgatt tgacttacct ggtccgtgag tgcagtcaat ttctcgagaa 4260 ccctggaatt ttgcactggc gcgctgcaaa gcgtgggcta cgttacttaa aggagacgca 4320 ggactggggc ctacaattag gaggagtgca atggagtcag caggaattga atgatcatct 4380 caaagctttt gcagatgcag actttgcgaa ccgagtggac gatcggaagt ctattgctgg 4440 gtatctcacc cagttctgtg gcagcaccat ttcttgggca agccagacag aacgaacggt 4500 cgctttgcac acgacagaag cagagtacat ggcgctcagc cttcttgtcc aagaagtcat 4560 acacctgcgg cagatgttga aagagctgaa ggtaaagcag gacaacccct cagatgtatt 4620 tgtggataac gaaagcgctc gaaagttggc gaacaaccct gaatttcaca gtcggacaaa 4680 acacattgat gtgcgacatc attttgtccg agaacgtgtt gagctgaacg agatcactgt 4740 gaaacgagtc gctgggactg acaatgtggc tgatgcattc acgaagccac tacttcgtgt 4800 gaaacttgag caacaccgag caagcatggg tttgatttcc caagggcaat acgagactac 4860 caagaacttg tgcaacgttg acaaccagta ggtggggc 4898 // ID Gypsy16-I_VC repbase; DNA; PLN; 6579 BP. XX AC scaffold_18; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy16-VC; KW Gypsy16-LTR_VC; Gypsy16-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6579 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 125-125 (2008). XX DR Genome; scaffold_18; Positions 1993703 2000281. XX CC Positions [5371-5868] - Integrase core CC 'ATTGT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS join(16..2355,2359..6507) FT /product="Gypsy16-I_VC_1p" FT /translation="MSAEGRQSSDTLENNLPDQQTVTNQDANTSAGGSAAA FT DLMPTDAAADQLEVSILRRLSAMSPHSALALFRRLGTSLASYISESTGDQP FT TGGARNRDQPTGGALNRNQPPSEQLTPDISLSFQQLTGVEETQPTGGLRPY FT SESSEPADQSMPEANAGVALTVLDAAAPGTSNGQSEQRQGLRGIASRLREL FT VQSLPGRVTSFPTPLVRTQSLPSLLLLSQPDNVTPERQVARDVAQQPQPDS FT LTHARTTAAIPNRLFMTPIPNDDAVLQARRGLGPTAVPQGTAAPNQDARPA FT GMQPATGLGLQPANAAHQAAPGFTFGQPFMQQPQQQQRPPDFYQAFSFSGL FT PGVEGQRGVPPPVDLQREIAGNSTTLVQQLQDVRGRINSQGHLMEKVNNNI FT NHIGAMMHTQNQVMHGQGQTLSRVVDQVNQIHQVGTPGPTLLTQNSPVPFA FT RHLPRPPCLTGDPKQDNKSISDKLVWYNSVVEFMQLTGMNHISNFKFFLQG FT PASKWFDSLQRYYSQKGISLDGSSLAAEFKKAYGDPSRTHELLEARERLQR FT GEATQTPGMSVSEYVQKFLLILLDAPDMAESDKISWFFAHMQPGLAKASAV FT DKDNCRHKTLDSAIEAAYAAEHRMNIAKSVRATAAVAAVATIHDDEPNLPG FT RWVDSDDPMDNSDSDPEPPHVAYAKPRTRDAKHGKGSSRPQQFTKKSTYNP FT LQSSRKKQILQSMAAEREAKRNKTGHGEVKRTDNWLQKLCFDKGYCWSCVH FT ENDGLPKDKEPTHWKDCTKHNSRRQDARREVAQCEGSGGNSAAFVPQLRVE FT DRAGCSGAKWDLMFSRAEFLRIQAMTGREFSFDAACNDDGSNSHCSAFASP FT RKSFFKHNVAGEHVWVNAPFEQARHWIKHYKRCKAGSPFNTSAVFILPKWE FT QFRQSTQGMTLLHEYPKGTQLFTSPAGEDTREYVSTTRSIQVWYDPPEQPC FT LRVAEPNKSITFKCKIGAIDAIALIDTGASHTIADVSVVNTANIQNCAAMD FT VEIADGKKVPIQGKTEVILQVQKYFGVVQALVMTNLLPGIQLILGMDWLQA FT NGALLDIPGLSCLLRTPANGSRKPIHLLADASRGRQGAGGEENAGVRTMQT FT ICAALAAKTTPDLMSASAARRAIKKNTPGMLVVVREVPDPTGSNPVALSVN FT SELPPPPPLRCFPDNPSLCSTFASPHQPNTSTDDSDMKHTAVVPDSDLKAL FT LNEYSDVFEPISGLPKDRGIGHTIDLEPDARPVFSRMYRLSPQEVEEVKRQ FT VEDLLNKGLIQPSTSPWGSPILFAAKKDGGLRMCIDYRQLNKATIKNRYPI FT PNPEDLFDALHGATIFSSIDLQSGYHQIRISEQDRQKTAFRTPFGHYEFLV FT LSMGLANAPATFQAVMNSVFRPYIGKFVLVYLDDIIIFSKSPQEHVEHLRT FT VLETLRKEKLQAKLSKCEFNRQELKFLGMVVGKDGLKVDDSKVKVVRDWPT FT PTDVSGLRGFLGLANYFRKFIQGYSTLVAPLTKLTGSKEPWVWGPAQQESF FT AGVKFALTNAPTLRFPDVTKPFEVIADASLHGTGGVLLQEGRPVAYTSAKF FT TQAEKGYTTTEQELLGVITALKQWRCYLEGPPITLITDHNPNTFLDSQKSL FT AKLSRRQVRWLEYLARFHYTWEYRPGRINVADPLSRLHAHTFVAHTQARYT FT VSSELPVQILQSYEQDAYFEDMRSLGRDGVVRDADGYYRRNGCIVVPKGPD FT HLRSRIMRELHDCPYAGHRGVERTTELIKREFWWPGITADVERFVKACRVC FT QHNKPLQRKPAGLLQPLPIPRDVWASVSMDFITHLPRTKAGHDAIVTFVDR FT LSKMCRVAPTTNDVTAEDLAQLYMDNVFRSHGFPEEIVSDRGPQFISKFWG FT ELMRRSGTERRLSTAYHPQTDGQTERMNRLLQEVLRNYVSPTQDDWDTKLS FT IVEFAINNSYQASIKATPFQLNYCRTPRLPNLLGMKEGTVPAATRYCSDIH FT EYVERAKRFIQKAQDSYKKYADKARRDAEYTVGQKVLLSTKNIRLKQPGTP FT KFLPLWIGPFTVVKCIGSVAVKLSLPSEYRVHDVFHISLLKPFIEGTGRTP FT AGPVAVLDDGAYWAVDKLLDHRDKSYGRGKSRREYLVSWEGYGPEHNSWEP FT ETNITDAAIDEYWALQESRTKQKPASEPKRKRTRK" XX SQ Sequence 6579 BP; 1697 A; 1772 C; 1598 G; 1512 T; 0 other; ttggtgcgaa ttgctatgtc agccgaaggc cgacagtctt cggacactct agaaaataat 60 ttgccggacc agcagacagt tacaaatcag gatgctaaca catctgctgg tgggtctgct 120 gcggcggacc tgatgcccac ggatgccgcc gctgatcagt tagaggtaag cattcttcgc 180 cgactttctg ctatgtctcc tcactcggcg ctagctctgt ttcggcgact tggtacctct 240 ttggcatctt acatttctga aagtactggc gaccaaccta cgggtggcgc tcgcaatcgt 300 gaccaaccta cgggtggcgc tctaaatcgt aaccaacctc cgagtgaaca attaactcca 360 gatataagtc tttcatttca acagcttacg ggcgttgagg agactcagcc tacgggcggg 420 cttcgtcctt actcagaatc atcggaaccg gcggaccaat ccatgcccga agctaacgcg 480 ggcgtagcac tcacggtatt agatgccgcc gcaccgggca ctagtaatgg ccaaagcgaa 540 caacggcaag gccttcgtgg aatcgcttct cgattacgtg aattagttca atctttacct 600 ggtcgcgtta cttcctttcc aacgccatta gtgcgaacac aatcattacc ttcactactc 660 ttattgtcgc aaccggataa tgtgacgccg gaacgacagg tagcccgcga tgtcgcgcag 720 caaccacaac ctgattcttt gacgcacgcg cgaacaactg cggccatacc aaaccgatta 780 tttatgacac ctataccaaa cgatgatgcc gtcttgcagg cacgacgcgg cttgggtccg 840 accgcggttc cgcagggcac ggcggcccct aatcaagacg caagacccgc cggaatgcag 900 ccggcgactg gtctgggctt gcagcccgca aacgcagctc atcaggcggc gcccggcttt 960 actttcgggc agccgtttat gcagcaaccg cagcaacagc agcggccccc tgatttctat 1020 caggcatttt ccttttccgg attgcccgga gtcgaaggcc agcgcggtgt tccgccgccg 1080 gtggatctgc agcgggaaat tgctggaaac tccaccaccc tggtgcagca gcttcaggat 1140 gttcgtggcc gcattaactc tcaaggccac ctaatggaaa aggtcaacaa caatatcaac 1200 catatcggcg ctatgatgca tactcaaaat caggttatgc atggccaggg ccaaaccctt 1260 tcgcgcgtgg ttgatcaagt gaaccaaatc caccaggtgg gtaccccagg gccaacctta 1320 ctaacgcaaa attcaccagt tccatttgct cgtcacttgc cacgaccacc ttgcctaacg 1380 ggagacccta agcaagataa caaatctatt tcggataaac tagtttggta taactccgtg 1440 gtagaattca tgcaactcac gggcatgaac cacattagta acttcaaatt cttcctgcaa 1500 ggtcccgcca gcaaatggtt cgatagcctg cagcgttact attcccagaa aggtatttcc 1560 ctggatgggt cgagtttagc tgcggaattc aagaaggcgt atggtgatcc ctcgcgcaca 1620 cacgaactct tagaagctcg cgaacgactt cagcgtgggg aggcgacaca aacgccaggc 1680 atgtctgtct cagaatatgt acagaagttc ctgttaatct tgcttgatgc gccggatatg 1740 gctgagtccg acaaaatttc ctggttcttc gctcatatgc aaccaggctt ggctaaggct 1800 tctgcagtag acaaagacaa ctgcaggcac aagacgcttg actccgctat tgaagcagcc 1860 tatgctgccg agcaccgcat gaatatcgct aagagtgtac gtgctaccgc cgcagtcgca 1920 gctgtcgcca caattcatga cgacgaacct aatctgccag ggcggtgggt cgactccgac 1980 gaccccatgg ataactcaga ttcagatcct gaacctccac acgttgccta cgctaaaccg 2040 cggacacggg acgcaaagca tggcaagggg tcctcacgac cgcagcaatt tactaaaaaa 2100 tctacttata accccttgca atcctcccgt aaaaaacaga ttttgcaatc aatggccgcg 2160 gaacgggagg cgaagcgcaa caagactggt cacggggagg tcaagcgtac tgacaactgg 2220 ctacagaagc tttgcttcga caaaggctac tgctggtctt gtgtccatga gaacgacggc 2280 ctgccaaagg ataaggagcc gacacattgg aaggactgca ctaagcacaa ctcccgcagg 2340 caggatgcta gacgttagga agttgcgcag tgtgaaggtt ctggcggaaa ctccgctgcg 2400 ttcgtccctc agttgagagt tgaggatagg gccgggtgta gcggtgccaa atgggacctt 2460 atgtttagcc gcgcggaatt tcttcgtatc caggcgatga ccgggcgaga attctctttt 2520 gacgcggcat gtaacgatga tggctccaac tctcactgtt ccgcctttgc atcgccacgc 2580 aaatcattct ttaaacacaa tgttgcgggt gaacatgtct gggtcaacgc accctttgag 2640 caggccaggc attggattaa acattacaaa cgctgcaaag caggcagccc attcaataca 2700 agtgccgttt ttattctacc caagtgggaa caatttaggc aaagtactca gggcatgact 2760 ctgctacatg aatatcccaa aggaacacag cttttcacat caccagctgg tgaagataca 2820 cgcgaatatg tttctaccac caggtccata caggtgtggt acgatccacc ggagcagcct 2880 tgcttgcgag tggccgaacc taataagtca ataactttca aatgtaaaat cggtgcaatc 2940 gatgctatcg cgctcatcga caccggtgca agtcacacta ttgcggatgt atctgtcgta 3000 aatacggcta acattcaaaa ctgcgcagca atggacgtag aaatcgctga tggaaaaaag 3060 gtaccaattc aagggaaaac cgaagttatc ctacaggtgc aaaaatactt cggggttgta 3120 caggccttag tcatgactaa tcttcttccg ggaatccaac taattctagg catggactgg 3180 ctccaagcca atggtgcact actcgatatt ccaggtctct cttgtctcct ccgcacacca 3240 gccaatggtt cccgtaaacc gatccatctg ttggcagacg cttcacgtgg taggcagggt 3300 gcaggtgggg aggaaaatgc aggagtacgg accatgcaga ctatttgtgc agcgctcgca 3360 gctaaaacaa cacccgacct catgtcggct agtgctgcac gacgagctat taagaaaaac 3420 acacccggca tgctggtggt tgttcgggaa gttcccgatc ctactggtag caacccagtg 3480 gctctttctg tcaattctga acttcctcct ccaccacctt tacggtgttt tccggataac 3540 ccatctcttt gtagcacatt cgcttcccca catcagccta acacatcaac cgatgattcg 3600 gacatgaagc acacagcggt cgtaccggac tcggacttaa aggcattatt gaacgaatat 3660 agcgacgttt tcgagcccat tagtggctta cccaaagatc gtggcatcgg gcacactatt 3720 gacctggaac ccgacgctcg tcctgtattc tctcgaatgt atcgactatc cccacaagaa 3780 gtagaagagg tcaaacgaca ggttgaggac cttcttaata agggcctcat acaaccgtca 3840 acctctcctt gggggtctcc aatcttattc gctgcaaaga aggatggtgg tttacgtatg 3900 tgcattgatt accgccagct caacaaagct actattaaaa accgctatcc tattccaaat 3960 ccggaagacc tgtttgatgc actacatggt gctacaattt tctcttcaat tgaccttcag 4020 tccggttatc atcagatacg cataagtgaa caggatcggc aaaaaactgc ctttcgtaca 4080 ccttttgggc actacgagtt cctagtcctc agcatgggac tagctaatgc acctgccaca 4140 ttccaagctg ttatgaattc cgtgtttcgt ccttatatcg ggaaatttgt cttggtatac 4200 ctcgacgaca ttattatctt cagtaagtca ccccaagaac acgtggaaca tttgcgcact 4260 gtgttagaga cactgcgcaa ggaaaaatta caggctaagc ttagtaagtg cgaattcaac 4320 cgacaggaat taaagtttct cgggatggtt gtcggtaagg atggcctcaa agtggatgac 4380 tctaaggtga aagtggttcg tgactggcct acccccacgg atgtgtccgg cctcagagga 4440 tttctaggct tggcgaatta tttccgtaaa ttcatccaag gatattctac cctggtggcg 4500 cctttgacta aactcacggg cagcaaggaa ccatgggtct ggggtccagc gcaacaagag 4560 tctttcgcgg gtgttaagtt cgcattaacg aatgccccaa cactcagatt ccccgatgtc 4620 acaaaaccat ttgaggtcat tgctgatgct tctcttcacg gcacaggtgg cgttctcctt 4680 caggaagggc gacctgttgc atataccagc gctaaattca cacaagctga gaagggctat 4740 acaacgacag aacaagagct actcggtgtc atcacagcgc tcaaacagtg gcgctgttac 4800 cttgagggac cgcctataac cctgataacg gatcataacc caaatacgtt tctcgactct 4860 cagaaaagtt tggccaagct ttccagacgt caggtacgct ggttggaata tctcgcgcgc 4920 ttccattaca catgggaata tcgaccaggt cgaataaacg tcgctgatcc cttaagccgt 4980 ctgcatgccc atacctttgt ggcgcatacg caagcaagat atactgtctc gtcggagctg 5040 ccagtccaaa ttctccagtc ctacgagcaa gacgcatatt tcgaggatat gcgctctcta 5100 ggaagggacg gtgtcgtgcg tgatgcggac ggttattacc gccgcaatgg ctgtatagtc 5160 gtgccaaaag gtccggacca cttacgatcc cgaatcatgc gggaattgca cgactgccca 5220 tacgcgggcc acaggggcgt cgagcgcacc acggaactca ttaaacgtga gttctggtgg 5280 cctggcatta ccgcggatgt tgagcgattt gtgaaggcgt gtcgagtctg ccaacacaac 5340 aagccacttc agcggaaacc agcgggctta ctccagccat taccaattcc cagagacgtc 5400 tgggctagtg tttcaatgga ttttatcacg catttgccac gcactaaggc ggggcacgac 5460 gccattgtca ccttcgtgga taggctttca aaaatgtgcc gggtcgctcc caccacgaat 5520 gatgtaaccg ctgaggactt agcccagcta tacatggaca atgtcttccg cagccacggt 5580 tttccagagg aaatcgtatc cgatcgaggc ccccaattta ttagcaaatt ctggggagaa 5640 ctcatgcgcc gtagtggcac ggagcgcaga ctatccacgg cttaccaccc ccaaacggat 5700 ggtcagacag agcggatgaa ccgcctgctc caagaagttt tgcgcaacta cgtcagcccc 5760 acccaagatg attgggatac caaactatcc atagtggaat tcgcaatcaa taactcttac 5820 caggcgtcca tcaaggctac tccgtttcag ctcaactatt gccggacacc tcgtctaccc 5880 aatcttttgg gtatgaagga aggcactgta cccgctgcta ccagatattg cagcgacatc 5940 cacgaatatg tggagagggc caaacgtttc atccagaagg cccaggatag ctataagaag 6000 tacgccgata aagctcgacg tgatgctgaa tacacggtgg gtcaaaaggt cttgctgagt 6060 acgaaaaaca ttcggctcaa gcaacccgga acgcctaagt tcctaccctt atggattgga 6120 ccattcaccg tcgttaaatg tatcggctct gtcgctgtca aactcagctt gccgtcagaa 6180 taccgggttc acgacgtgtt ccacatttcc ctactaaaac catttattga aggaactggg 6240 cgcacccccg cgggaccagt tgctgtattg gacgacggtg cctactgggc tgtcgataaa 6300 ttacttgatc atcgtgacaa atcttatggt cgcgggaaat cacgtcgtga gtatttggtg 6360 tcgtgggaag gctacggccc cgagcacaac agttgggagc ctgaaactaa tatcacagat 6420 gcagccattg atgaatattg ggctctccag gaatcccgta ctaagcaaaa accagcttct 6480 gaacctaaac gtaagcgtac tcggaaatga ttacccacgc acccccgagg ggtatccatc 6540 tgtaagctcg cagggactct cgctgcaggt ggggaggaa 6579 // ID Gypsy-25_PIT-I repbase; DNA; PLN; 6950 BP. XX AC AATU01001818; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_PIT_; KW Gypsy-25_PIT-LTR; Gypsy-25_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6950 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001818; Positions 41626 48575. XX CC Positions [4459-4818] - Integrase core CC 'ACCAT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(2758..4455,4459..6051) FT /product="Gypsy-25_PIT-I_1p" FT /translation="MVLDAMSGSEVFSAIDLTDGFYQILMRLSDIPLTAVS FT TPSGMLWEWLVMPQGLKNAPATFNRMVSHVLRPLRDFAPSYFDNIFVHSRA FT EGGLSALEVHLKHLRQVFQVMCENKLYANLKKCIFCAPEIPVLGCFVSKNG FT VRADPEKVSSICAWPTPQNPTELRQWLGLANYLHKYTKNYAGLIQPLSSLL FT KKDVSWSWTSAHQAAFDSVKKSLAEAPILALPDDSKPFHVVCDASDFAIGC FT ALMQFDEEDRERVVSYQSRQMKPAERNYPVHDKELLAMRYALIKFRVYLLG FT EDTFAVYTDHASLRTAMKSPHLSQRMARWLSFFSEYNFVVHYKPGKNNILA FT DALSRRPDYDPRGALGRQASLDEDDVDECATCEASGVNLTSVSPVMPLRDE FT IRAAYEHDSTCSSILKHLRSPSTDTLGALSRSGRNKIHRYRLEDELLTYSI FT DNFDAPRIVVPNDPDLRSRIIHEFHDAPLGAHLGREKTFAAVSRDFYWPHL FT YKWVRKWVRTCETCQRVKPASSSQAPLRPLPVATEAWRSVSMDFIFGLPPD FT AKGRSGVFVFVDRFSKMVTFPVSDAITAADTAVHLLDAVFRHHGLPESIVS FT DRDPRFTSAFWSKLFELLGSKLMMSTAAHPETDGQTERVNRVLEDVLRSYA FT TSFSSWSSFLPLAEFALNNAVHASTGLTPFFVNNARHPRVPALLAVGHPTA FT PRVSTLGGEEAADRASTPSAMSPAATPVLGQPVHTPVANDISSVSPVPTSV FT NAVTRSASSSLAPANYAPKHAARPIDSAVVSDFVLQRQAVTRYVRDALQDA FT VDKQKENADRIGRKNTATFTTGERVLLSTEGIRNSAVTNLGANKLAPRFIG FT PFTVIKAIGDAYTLDIPTSLRLHPTFYVGRLKKYHPATIPESSQATEPEHA FT SSDLLDGRGEPSTHPHQESDLEAASPSANVREPTSPASATEQGSLGSTDAA FT AHSPRWPGQSDREPHPTPAGHPSSCSASRSRSGQPERECYRRDGPPPVVDA FT AGDTRWIVEYIVAHEDPLRAPKRHRGLAHDVPADRRYRVRWLGFPPDEDTW FT EPRANLLRDVPNVVQAYESSLAANHLVTHASSHEESDSSD" XX SQ Sequence 6950 BP; 1365 A; 2178 C; 1973 G; 1434 T; 0 other; cctggtagca ctttgtagtc cttccaacga ccaagttcga catgagccaa gacctcgacc 60 acgctgcctt tctccatctc actcggatcg agtaggaagc tctccaccgc cttgcggcgg 120 tgtccggaga agccgtcgtc acgtcgctgc tgcgctcagc gacgcccgac gagcagcgcg 180 ttgcggcaca agaattcatg gaacgcgagc tcgccgatgc gaatcaacga gtgtcaactc 240 cctcgcgtat ctccacgaat gacgtcgtga agctagagac gtccacctac tccggtgccg 300 gaggagatcg acttccgctg aatcgctgtt ttcgagagat cgacatcgcc atcgcctcga 360 ggttgatcga ggcgccttcc gcgaaggtcc atttcctcct ctcgcggctg tctgggaaag 420 ccaaggaatg ggctctcggc aagttggttg tcgatcccaa cgtcttcccc actctggata 480 ccctccagag tgaccttcgg ctcgcgttcg agccgccgca agatgaattc cgaattcggg 540 cagacttctt cgcccttcgg caaggcacga tgactatgcg cgactacgtc cagaagacac 600 gacacctcgc gtcgtgcatc gtgtctaagc cgatcgatat ggcctctcag gttcatgtat 660 tcgtgttcgg tatgcgcgaa ggcatgacgc gctactgcct tacaagatcg gacccctcta 720 cgctcgaaga ggcattcgcc ctcgccctac gcgaggacta cgtggttgcg gcgtcatatg 780 ctcacgcgct acctgcttct gctcgggatt ctgcgcccga gcccatggac atcgacgcta 840 tcgatgcgac gagcaatcgt cagcgttatg cagcgcgtcg gagcggtgct cggaacaatc 900 gttctctcac ctgcttccgc tgtcggaagg tcggtcatcg cgcggcggag tgccgcgcgc 960 cagctccagt gcttgcgcat gtcgatgccg agcccgtgag ttctgaccag ccaaaaaacg 1020 gtcagggtca gtaggtgcgg ggcgccctac tggctggaat ggaggtccgg gtcccccggt 1080 ggcaacccaa cctcctagcc ctcctgtgct gcatgcacac tttcatgcca ccaccacgcc 1140 gagcgattca agattgatca ttgtcagtct tcatgtcgcc ggtgcccggc gaccactgcg 1200 agcgctcctt gattcaggag cgaccaacaa cttcttccgc gcgtcgtgct tgtcggtact 1260 cccgtcggac atcactgtcc gcaaaggcag agggaaggtc gctgtcaagt tggccgatgg 1320 gaaatcacgc cgcgtagcgc ggcgcgagat tacccttccg tacacgttcg acggtttccg 1380 aagcaacgac gacttcctcg tcattgagat gaattacgcg tttgactgca tcctgggtat 1440 gccgtggctg acgcgctatc aaccagagat tgactggttg gccctggtcg gtcaagcgcc 1500 gcagtgatta tgatgtgagc gaggtgttca cgcacctcgt gttcgcccag aaggattggg 1560 cctcacgtca ccgtcgtgga ccggtcatcc acgacgcacg ttgtgcacag agtgagcgat 1620 ggccctctct gcacggcttg cgcagtgctg ttaactgacg agtccccgcg gcgccgcggg 1680 gatgaagaca aactggcggt cgagcagggg ctcccgcaga tgtacgagac ggcggtcgag 1740 caggggctcc cgcagatgta cgagacggcg gtcgagcagg ggctcccgca gacgaataag 1800 atggcggtcg agcaggggct cccgcagacg aacgagatgg cggtcgagca ggggctcccg 1860 cagacgaacg agatggcggt cgagcagggg ctcccgtcaa ttgagccggt ggtcgagcag 1920 ttggcgctcc cgctgaacac taccgcggtc gagcaggggc tcccgctaga ggggggtgac 1980 atctcgtcca gcgagagtga ctcatcattc tcgagttcgc actcgaggcg gcgaaagagg 2040 aagtcgaagc ggcgtcggct gaaacctcgc cgagagcccg taccaagtga cagctcaccg 2100 acggagtcgg tctgcgtgct tgagtatgtg gaaggtacct ctggccgccg acgaacactc 2160 gagcttgcaa acccgcctgg cgaggcaggg tcgatcactc gacttccagg tctctcctgg 2220 tagaacttcc ttcgcggcct caaggacgat gaaatcgaac aggtttgcct gatcaccgac 2280 gccgattcgg cgtcgctcga agtgaatgca gtcagtgacg gcgacgctcc ctcgcgccca 2340 aagagcgctg agccgaagtc ggcccgcgag gagcgcttcg cagcgcagtc ttgggacgcg 2400 ctacgcgaat ccggcaatcc agtctacgag accgcccgcg aatatgaaga tgtatttccg 2460 gataagatcc cagcggagtt gccagctgac cgaggaattc gccacgatat tgatctcgtg 2520 cccggctcga agtattgtgt gacgcggcag tggccgctcc cgcgagatca ggtccaagct 2580 atcgatgact tcttcgagag ccgccgcaag gcgggtcatg tgcgtgagag cacatcgccg 2640 cactccagtc cgaccttctg tgtgaagaaa gccacgggcg gatggcgcat cgtccatgcc 2700 ttcaacaagc taaacaacgc taccatccct gcccagacgc cgattcctcg gaaggacatg 2760 gtgctcgacg caatgtcggg tagtgaggtc ttcagcgcca tcgacttgac cgatgggttc 2820 taccaaatcc tcatgaggct gagcgatata ccgctcacag cggtaagcac tcccagtggt 2880 atgctctggg agtggcttgt tatgccgcaa gggttgaaga atgctcccgc cacgttcaat 2940 cgcatggtat cccatgtgct gcgcccgctc cgcgacttcg caccgagtta tttcgataac 3000 atcttcgtac acagtcgcgc tgagggaggc ctcagcgcgc ttgaagtcca cttgaagcat 3060 ctgaggcaag tcttccaagt gatgtgcgaa aacaagctgt atgccaactt gaagaagtgt 3120 atattctgcg cgccggagat tccggtgctt ggctgctttg tgagcaagaa cggcgtccgc 3180 gccgaccccg agaaagtgtc gtcgatatgt gcgtggccta cgccacagaa tcccactgaa 3240 ctgcgtcagt ggctgggtct cgcaaattat ctccacaagt acacgaagaa ttacgccgga 3300 ttgatccagc cgctctcttc gttgttgaag aaagatgtgt cgtggtcgtg gacttccgca 3360 catcaagccg ccttcgactc ggtgaagaag agtctcgccg aggccccaat cctcgcgctc 3420 ccggatgact cgaagccttt tcacgtcgtc tgcgacgcga gcgatttcgc catcggctgt 3480 gcgctgatgc aattcgatga agaagatcga gagcgtgtcg taagctacca gtctaggcag 3540 atgaagccgg cggagcgcaa ctaccctgtt cacgacaagg agctccttgc gatgcgctac 3600 gctctgatca agttcagagt gtacttgttg ggtgaggaca ccttcgcggt gtacaccgat 3660 catgcatcgc tgaggacagc gatgaagagt cctcatctct cccagcggat ggcccgctgg 3720 ctttcgttct tctccgagta caacttcgtt gtccactaca aacccggcaa gaacaacatt 3780 ctcgccgacg ctttgtctcg gcgtcccgac tacgacccac gcggtgcatt gggtcgacaa 3840 gcttcgctgg atgaagacga tgtagacgag tgtgccacgt gcgaggcgtc aggcgtcaac 3900 ctgacgagcg tctccccggt aatgccactt cgcgacgaga tccgagctgc ttacgaacat 3960 gactcgacgt gctccagtat cctgaagcat ctccgctctc ccagcaccga cacactggga 4020 gccctttccc gctctggacg aaacaaaatc caccgatatc gtctcgagga cgagctgctg 4080 acgtacagca tcgacaactt cgatgcccca cgtatcgttg ttcctaacga ccccgatctg 4140 cgctcacgga ttatccatga gtttcatgat gccccgctgg gcgctcatct cggtcgcgag 4200 aagacatttg ccgctgtgtc acgcgacttt tattggccac acctgtacaa atgggtgcgt 4260 aagtgggtgc gcacctgcga gacctgccag cgcgtcaaac ctgcctcgtc ttcgcaggct 4320 cccttgcgtc ctctaccggt ggccaccgag gcctggcgct cggtgtcgat ggacttcatc 4380 ttcgggctcc cacccgatgc taaaggacga tcaggtgtct ttgtattcgt agaccgcttc 4440 agcaagatgg tcacctgatt cccggtgtcg gatgcgatca ccgcggcaga taccgcggtg 4500 cacctcctcg atgctgtctt ccgtcatcat ggccttcccg aatctatcgt ctccgaccgc 4560 gacccgcgct tcacgtcggc cttctggtca aagctcttcg agctactggg ctcgaagcta 4620 atgatgtcca cagcagccca tccggaaacg gacggccaga cggagcgcgt aaatcgcgtc 4680 ctcgaagacg tccttcgaag ctacgcgacg tcgttctcca gctggagctc gtttctgcca 4740 ctggccgagt tcgctctgaa caacgcggta cacgcgtcga ctgggctgac gcccttcttc 4800 gttaataacg cgcgacaccc gcgtgtccct gctctcctcg ccgtgggcca tcccacagcg 4860 ccgcgtgtct ccactctggg tggggaagaa gctgccgaca gagcgtctac tccatctgcg 4920 atgtctccgg cggctacacc ggtactgggt caaccggtac atacaccggt tgctaatgat 4980 atctcgagtg tatcccctgt tcccacgtcg gtcaacgcag tgacacgctc cgcatcgagc 5040 tcacttgcgc cagctaacta cgcgccgaag catgcggcgc gaccaatcga ctccgcagtc 5100 gtctccgact tcgtactaca gcgccaagcg gtcacccgct atgttcgaga cgcactgcag 5160 gatgcagtgg acaagcagaa ggagaacgcc gataggatcg gtcgcaagaa cacggccacg 5220 tttacgacag gcgaacgcgt gctcctgtcg actgaaggta tcagaaactc tgcggttacc 5280 aacctcggcg cgaacaaact cgcgccgcgc tttattgggc catttacggt aatcaaagcc 5340 attggtgatg cctacacgct tgacattcct acgtcactac gtctgcatcc gacgttttac 5400 gtcggacggc tcaagaagta tcaccccgct acgattccag agtcgtctca ggctactgag 5460 ccggagcatg cgtcgagcga ccttctcgac gggcgcggcg agccatcaac ccatccgcac 5520 caggagtcgg atctcgaggc tgcgtccccg tctgcaaacg tccgtgagcc gacctctcca 5580 gcatctgcaa ccgagcaagg atctctcggt tcgactgacg cagctgcgca ctctccccgg 5640 tggcccgggc agtctgatcg agagcctcat ccaactcctg ctggacatcc cagtagctgt 5700 tcagcaagtc gttctcgctc tgggcagcca gagcgcgagt gctatcgacg cgacggccct 5760 cctcctgttg ttgacgctgc cggagatacc cgctggattg ttgagtacat cgttgcccac 5820 gaagatccac ttcgcgctcc caaacgtcat cgtgggctcg cccacgatgt tccagccgac 5880 cgtcgctatc gggtacgttg gctcgggttt cctcccgacg aggatacgtg ggagcctcgc 5940 gccaatctcc ttcgggacgt cccgaatgtg gtccaggcgt atgagtccag cctcgctgca 6000 aaccaccttg tgacacatgc cagctcgcac gaggagagcg actcgagcga ttaagcgaac 6060 gtgatcgaga ccgatgactt tgtcgaccac gtgaacggga ccgagatctg cgatttgtgc 6120 gaccacgcga acgtgatcga gagcgacgac ttgagcggcc gcgcgaacga gaccgagtcc 6180 gatgccaaga atcttcacgt gcagggcgtc ggcgtgagcc ggcgcgatta gaggcgcgca 6240 cgttctcggc caacgagcga cgatacttct cgatccaccc gtgttcttgt tcaccgagcg 6300 gatactcggc gatgtggctt ctccactcct cgacagtcgg acgcgatcca gtacaagtgc 6360 cacaaccttc agcgaccctc acgtagcaga tgcggcgcat gtcctcccat gcgctggtgc 6420 agacgcgctc acggagctcc gtgagcgagt gctccttgac gatctcctcg cggtacacca 6480 gccagccgac gaagctctcc ccttcttcct gcgtccggtt ccaacgccgg atgaaggcgc 6540 accacgactt ctgcaatgcg ccatatgcga caccctcgac aggcttctga cgcagtcctc 6600 ggaagcgccg gaagtgatcc ttcatcgtgt ccagtgtgtc cggagcccgc gctccggata 6660 tgtcatagag agcccatgcc cggagctgat cgttcatcac gcgcgtgccc cgtgccgctg 6720 cggtcgacga cgtcgccgtc gtcggtgtcc ccgtccgctg ttgatccatc gtgctgttcg 6780 tcgtcttctc cgcaagtcga gttatgtcgc tcctgcgctt cgcaggagat gtctccgtct 6840 ctgtttcgct ccgcccgtta gccaagtccc cgttcgccat cctcacgcag attgatttgt 6900 tcttcgccca ctgcttatgt tgcgtaagtg caactttaag aggggggtaa 6950 // ID Gypsy-5_PIT-LTR repbase; DNA; PLN; 526 BP. XX AC AATU01003047; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PIT_; KW Gypsy-5_PIT-I; Gypsy-5_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-526 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003047; Positions 35815 35290. XX SQ Sequence 526 BP; 115 A; 166 C; 123 G; 122 T; 0 other; tgtcccgtac ccgggaacgg aggggtcatt ccaggagctc tgcctcccgt cgggatgacc 60 cgagaccctg gaatcactcc tcgccccgcc gtcccatcag ggtggttccc gttgaactca 120 acctcgcacg tgcccctgac cgagcccgtt agggtggtcc tataaggggg cccctgaacg 180 ccgaagtctt ggcgtcgtgg gaccaaacgc acctcgcgac atcaagcccc ttccttgaca 240 ctctccattg tcccacgaag gccgacaaca aacgaagtga atccttcctt tttttatatg 300 tagtgtagtg tatgtaaggt cgagaaggtg ttaggcctct cctccggtta gctctcagtc 360 ttatatttcc ctccttctac tcaagaggaa gccaagccaa tcaacaaact tttattttca 420 gctctctagt gttcctatct accgttcctg cagccactga acaagaccgt actccctgaa 480 cagccgcgga ctacccgacc cttgaaggaa gaggaggtat acgaca 526 // ID Copia-40_PIT-LTR repbase; DNA; PLN; 550 BP. XX AC AATU01009827; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-40_PIT_; KW Copia-40_PIT-I; Copia-40_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-550 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009827; Positions 7182 6633. XX SQ Sequence 550 BP; 122 A; 149 C; 143 G; 136 T; 0 other; tgtgagatgc tatttgctac ggtctgccag tgtccagtgc cagacgtcat tgccacagcc 60 caagacactg gcaataccag tactactgat ccaacctaca atcctacgcg tgtctatgca 120 tgtactgcat cccggcgtac cggtctgcaa tgcgctcacg tgcgagcggc gtgcggaaga 180 taccaaggac tgtatgaagg acgacatggg tggcggtgag caactgcaac tgcgttgcag 240 gtgatggtga actacttagc tttctataga ctgagtatgt gctaatctaa ctttgcggaa 300 catggaggtt caggtgctgg cagctctcac tctcacaact gcttttgctg cgctgcgtgc 360 acaacgagtg agaggcagca agcaccagaa ctccgtggtc ctgtcgtggt actttgcccg 420 gcactcacgt gtcttacatt ctattcctac ttgctctacg cctactgccc tacaagtctg 480 tgcttatggc acctacttta cgtagtgata gaaggtcaga gagcccggtg acgcgccaag 540 cgtcatctca 550 // ID Copia-6_PIT-LTR repbase; DNA; PLN; 577 BP. XX AC AATU01002515; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PIT_; KW Copia-6_PIT-I; Copia-6_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-577 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002515; Positions 149189 149765. XX SQ Sequence 577 BP; 112 A; 184 C; 173 G; 108 T; 0 other; tgtgagatac cacgctgggt atgctgcact accagagagg agaccagtgc tggagcgccg 60 ctggcgccgc cgaagcccag cctggaagca ctggagaagc cacttgaagc tggtgcgccg 120 caccgctcaa cgtgccggaa cgggacgctg cgctgtccca gcttgctgcg attatgcagg 180 cgctgcctgc tgctgaagcc gtcctgcgga cggaaccccc gccgttgctg ccgttgcaca 240 ggcgctgcct gttgcagagt ttgtcctgcg gacaagactc ctgagtgctg ctgcgcacac 300 tcaacggcca gcacaagatc agctaaagag ggctctaaca gtaatataaa catacgggtt 360 gcgagggtac ggcgaaggtg gagtgcgctg cgcgcactcg gggctcctag agtctcactt 420 ccgaatccac cactgcgctg ccaagcccct caagtcccgg taaggcttct gccttgctac 480 tccggtgtcc gtaggcgttc ttccttttct caatgcagaa cgacggacag gacgagtcgt 540 cggagcctgc cggctccccg aaccgtacca cgtctca 577 // ID Gypsy-13_PPa-I repbase; DNA; PLN; 4606 BP. XX AC . XX DT 15-DEC-2009 (Rel. 15.07, Created) DT 15-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-13_PPa-I; Gypsy-13_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4606 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 975-975 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(375..1064,1076..1555) FT /product="Gypsy-13_PPa-I_1p" FT /translation="MQQYLQLFGANTTEGIMYAASYLRDAAAIWWRHRVQS FT YGAQGGFCDWKEFETKFRNQFWPINVEKIACDQLANLTQSRLVQDYVSQFK FT SLCLQIGNVSEAEMMDRFLRGLKPGIQREVELKDPQTFEEAIRIAKRIDAI FT DFRNYRARPIAQSPMPLSNTMAQQPIPMEIDALQGSLIPQRRQILVQKRLC FT FYCREPGHQIGGCPKYQNSITNKTRQVHSLKTHQVNNEIEGSLIKAPRASI FT RDSYCLSETNGMALDNYKKSRLVHLMGLLRGQPCRVLVDCGSTKNYILTEI FT VNQLGIKTKVIKGRSIYLADDRENILSETCEEETLRLTDTYVLRERFKVTK FT LRYDVILGMPWLEVENKQVDWIARTISFKDGGCKVTLCTSASSEEEK" FT CDS join(1833..2210,2315..2947,3503..3835,3839..4588) FT /product="Gypsy-13_PPa-I_2p" FT /translation="MNLKSYKRHWTNSWRRASFEKAHHHGEHLYSLHPRRM FT VDFGFASTIEASISRLLKIHIHFHVWMIFLINFKVRPSLANWIFGVAIGRH FT LLQERILKRWHFVCAMDILNGLFYLLASPMLQPLSWITEVLRQLQDSRFYC FT KQSKYELWKSKVTFLGHVVSSKGMRMEQDKMKAMEDWPTPKDASEVCSFLG FT LAGYYCHFVWQFVHIAASLTNLLEKGAPFEWKLEQQSAFDRLKEALITAPI FT LQPYDSNLPCILDIDAFDFAIGAVLQQDFGRSLQLVAYESCKLRRTERNYS FT TCDREQLAIVHATKMWRHYLLEKPVVVWIDHRSLLYDLHLKNMKSVTMDLI FT TCLPQMPHNHTAIAVFVDRLLKQLHLAMVRLDIDAPVLARVFFDTIFCHHG FT LPRVIISDRDPCFTRSFWQALFKLLGTRLAMSTTFHLQTDGQIEHANRTLE FT DMLAFVVVHHNDWDEYLTPLEFAYNDSIQASTNHSPFFLNTDQHPIMPTTL FT HCPIDTNNLTMEEFIQWLTMALQEARHCLFTAQNRQKQYADNHWQYKTFRE FT GDQVLLSNANLPLATSIQIRKLAPWWLGPFHIFAVIFDVAYCLELLPHIWV FT HLVFHVLQLKEFHTKPKRFLDRHQPPPPPVVVDDQQEYEVDNILEHCYLCR FT GSGRPQLQYKVLWKGYPIYDAMWKPAQNLIHCQETIWRYHREQNEDVPH" XX SQ Sequence 4606 BP; 1436 A; 918 C; 1009 G; 1243 T; 0 other; ttggtatcag agcgagtatt agactgttct ttggtagtat gtcgatagcc atcatctagt 60 ttgaggtcaa ttattgtggt cacactggat attgtattga ggctaccatg agctactctt 120 aaaaagtcaa ttaaaaggtg agaaggcatt acaatagtag agtccagcaa agaaattaca 180 acatgggaga tatggcagag caatcccaga tggaggctca aatacaacac ctcttaggct 240 agatagctac tttgcaaggg caaatagaag cctctaggac aagggagtca acatctgcta 300 ggctgaaatt gagtaagcct agtacatact ctggaacttc aagacaagaa gatgtatgtc 360 aatggctctt caacatgcaa caatacctcc aactatttgg agcaaatacc actgaaggaa 420 ttatgtatgc agccagctat ttgagagatg cggcagccat ttggtggcga catcgagttc 480 aaagctatgg agctcaaggt ggattttgtg attggaagga gtttgagacc aagtttagga 540 atcaattttg gcccatcaat gtagagaaga tagcatgcga tcagttggca aatcttacac 600 aatctaggtt ggtgcaagat tatgtctccc aattcaagtc cctatgtctc caaattggca 660 atgtttcaga ggcagagatg atggatcgat ttctacgagg tttgaaacct gggatccagc 720 gagaggtgga actaaaggat ccacaaacat ttgaagaggc aattaggatt gcaaagagga 780 tcgatgctat agatttcaga aattatagag cacgacctat agcacaaagt cctatgccgc 840 tatctaatac tatggcacaa caaccaatac caatggagat tgatgcccta caaggatcat 900 tgataccaca aagacgacaa atattggtac aaaagagatt gtgtttctat tgtcgagagc 960 caggccatca gattggaggt tgtccaaaat atcaaaattc aatcaccaac aaaacaaggc 1020 aggttcatag tctcaagact caccaagtca ataatgagat agagtaggaa aatgaggctc 1080 tctaataaag gcgccgaggg ctagtattag agatagctat tgtctctcag agacaaatgg 1140 catggcctta gacaactata aaaagagtcg actagtgcat ctaatgggac tactaagagg 1200 acaaccatgt cgagtgcttg tggattgtgg ctctacaaaa aattacatct tgactgaaat 1260 tgtcaaccaa cttgggatta aaactaaggt aatcaaggga agaagtatat accttgcaga 1320 tgatcgagag aacatattga gtgagacatg tgaagaagaa accttgaggt tgactgacac 1380 ctacgtctta agagagaggt tcaaggtaac aaagctaaga tatgatgtta tccttggtat 1440 gccatggcta gaggtggaaa ataagcaagt tgattggata gcaaggacaa tctctttcaa 1500 agatggtgga tgcaaggtga ctctttgtac ctctgcatca agtgaagaag aaaaataatc 1560 tgcaactaaa gacttatttg taggaatgac ctttatgaag aagcaaatac agcataagca 1620 actggtatat atggtggttc caaatcttgc atcaatggta gaaaagacag ccaaaggaat 1680 agaatgggca gagcaactca tacgagaata ttgagatgtc tttccaatcg acctacctag 1740 tggcatgcct cttgatcgag gtgcctcctt tcaaatagaa ctattgcttg gagccaaacc 1800 aataagtcgg ccaatttatt gcctagcacc aaatgaactt gaagagctac aaaagacatt 1860 ggacaaactc ttggagaagg gcctcatttg agaaagcaca tcaccatgga gagcacttgt 1920 actctttgca cccaagaagg atggtggact ttggctttgc atcgactatc gaggcctcaa 1980 taagcagact attaaaaata catatccact tccatgtatg gatgatcttc ttgatcaact 2040 ttaaggtgcg accatcttta gcaaattgga tctttggagt ggctattggc agacacctat 2100 tgcaagagag gatattaaaa agatggcatt ttgtatgcgc tatggacatt ttgaatggct 2160 tgttttatct tttggcctca ccaatgctcc agcctctttc atggatcaca tgaacagatt 2220 gttttgggac cttttggaca agtatgtagt tgtcttcatt gatgatatcc tcatatatag 2280 taaaatccct gaagagcatg agcaacacct ataagaagta ttgcgccagc tacaagatag 2340 tcgcttctat tgcaagcaat caaaatatga actttggaag tcaaaagtca cctttttggg 2400 gcatgtggtg tcttccaaag gcatgcgcat ggagcaagat aagatgaaag caatggagga 2460 ttggccaacc cccaaggatg cttctgaagt ctgctcattt ttaggccttg ctggatatta 2520 ttgccatttt gtttggcaat ttgtacacat tgctgcctca ttgacaaacc tattggagaa 2580 aggtgcccca tttgaatgga aactagagca acaaagcgcc tttgataggt tgaaggaggc 2640 actcattact gctccaatat tgcaaccgta tgattccaac cttccttgta tacttgacat 2700 tgatgctttc gactttgcta ttggagcggt ccttcaacaa gactttggta ggagccttca 2760 acttgtggca tatgaatcat gcaagctcag aaggacagag cgcaattact ctacatgtga 2820 tcgagagcaa ttagcaattg tacatgccac aaagatgtgg cgacactatc tgttggagaa 2880 gccagtggtt gtttggattg accatcgatc cttgctatat gatttgcatc tgaaaaatat 2940 gaaatcatga catcattatt ggaaagaata gttgtagctt tttgatatcc agcttgagta 3000 caagcaaggg caacaacata ttgtgccaga tagcttattg cagagaccag acttgaaggc 3060 caaattgaga gacaaggcag aagtcgctac cattagtagt gtcatttcaa acctaaccaa 3120 agaggcagaa tagaaggaag ctatgcattg ggatgcttat ttcaagatgg ttagcaatcg 3180 actgaaggtg gacaatatac aatatcaaga ttacagtctt agtgatggct tgctctattt 3240 caagaagcaa atttatgtac ctgacaatgc tatactctgg acgcacatac ttcaagaaag 3300 acatgacatc ccaatatctg gacatctagg gcaagagaag actctagaat ggatctcaag 3360 gacatgattt tggacaggtt tggatcatga tgtttgagct tttgtgcgct cttgcgagtc 3420 atgtcaacat aataaagcat gcaatgtaac atctcttaga ctattgcagc caattccact 3480 acctatggca cgttgggagt aggtgactat ggatctcatt acgtgtttgc cgcagatgcc 3540 tcataatcac actgcaattg ctgtctttgt ggatcgactc ttaaagcaac ttcacttggc 3600 catggtgcgc ttggatattg atgccccagt acttgcacgg gtcttctttg atactatctt 3660 ttgtcaccat ggattacctc gtgtcatcat ttcagatcga gatccatgct tcacgagaag 3720 tttttggcaa gccttattca agctactagg tacacgactt gccatgtcta caaccttcca 3780 tctccaaaca gatggacaaa tagagcatgc aaatcggacc ttggaagata tgctgtaggc 3840 atttgtggta gttcatcata atgattggga tgaatacttg acgcccttgg agtttgctta 3900 caatgatagt attcaagcaa gtaccaatca ttcaccattt tttcttaata ccgatcaaca 3960 tccgattatg ccaacaactc tccattgtcc catcgacacc aacaacctga caatggagga 4020 gtttatacaa tggcttacaa tggccttaca agaggcacgg cactgcctct ttactgcaca 4080 gaatcgacag aagcagtatg cggataacca ctggcaatac aagaccttcc gagagggtga 4140 tcaggtgtta ctctccaatg ccaacttgcc acttgctaca tcaatccaaa tccgtaaact 4200 agcaccttgg tggcttggac ctttccacat ttttgcagtg atttttgatg tcgcatactg 4260 cctcgagctt ctgccacata tttgggtcca tctagtcttc catgttttgc aactgaagga 4320 atttcatacc aagccaaagc gctttttgga tcgacaccaa ccaccaccac caccagttgt 4380 agttgatgac caacaagaat atgaagtaga caacattttg gagcattgct acctttgccg 4440 tggcagtgga cgtccacaac ttcagtacaa agttctttgg aaaggttatc ccatctacga 4500 tgcaatgtgg aaacctgcac aaaacctcat ccattgccaa gagacaattt ggagatacca 4560 tcgggagcaa aacgaggacg ttccacatta gtagagggag attaat 4606 // ID Copia-50_PIT-I repbase; DNA; PLN; 4481 BP. XX AC AATU01008506; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-50_PIT_; KW Copia-50_PIT-LTR; Copia-50_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4481 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01008506; Positions 6487 2007. XX CC Positions [1856-2368] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 8..4033 FT /product="Copia-50_PIT-I_1p" FT /translation="MSPTAQPTATNNNTRSDVEDQGGMNARGADVFADARE FT GPRPNTLGFPDDLRFDEADRESVELHSQLQLIRQLQSELAAVRTQLDARTL FT SMSDTSMATAPPTPKKPKIKDVRCPNFKGTEVYPGLGAGFESFIHEFEHAV FT RTEGLVNGSTWTDEFKASIIVNFLEGNASRHYHKKNAEWRQRHEGEDMPYS FT EVKRALLTEFGCKLSQLELSTKMQCYKREGDSWHDYVEYLNFIESLMEGDQ FT TKLVMEVFGNNACPELAPTLLSSISEESTDYAAETDRMKRLLYKLKGDGRK FT SGVQRKNRHGDRSKSHGARNHERNNRFIDHNGGGSHGNNGDYAAKSTPHQN FT NGQAFATTGNRGEIRCHVCGQPGHKIFSCPVVEQAKRMASSGNANIAAASE FT ECEEDKDSAHDSDAEAHVWMAVKATKQPEHDGTWTVDSGATHHLCSDRRQL FT FAMEPAYLSVRVANGNLVPATERGSTVITVTVKGVKRTILLENVYFAKDID FT HNLISVGQLSKKGISCTFGENEKCIIRSKTGKVLAEVGRSPTNSLWSIGIE FT HGAASFAAMTSSTLRQWHERLGHVNYQDLVRMLDKKLVEGMIATNKNVNFC FT MNCAEAKQARRAKNTHDTSTSAPMDEPGATLCVDLKTDMTPDRLGHKHILT FT IVDHATNFNRVYLLYKKSDAEGNIEDFINEFERQYDIKVKVLRSDGGGEFG FT SMRLDRFLLNRGIRHQSTEAGMSSSNGKAERFHRTVMDSARAMLWASALPQ FT RFWGDAVLYASYIRNHLPTRSNADHASPIEALTGKTPSISHILRFGAKCTS FT HIAHTAKKSTKKRAEKGIIVGIDTHKKAYKVFIPRTKRMVTTTHIQNIDRI FT DARAVGRYMDAVDKEQIRGETAAGNGEQENTRKPYEQTEVNGVQPEDAEGN FT HEPSARAIQRVFGLNRGARPLPNNDFTLPQSFIDEFSTPVSALLTVSLQGG FT AALSTLLAGKNITEPTTVKEARCSSQWPEWERAMQEELRAIAENATWEIVD FT TPIDGNLITAKWVFKLKFDNKGELERFKARLVARGFNQKYGIDFGETFAPV FT LKIASLRLIVALAALWQAVIRQGDVPNAYLRAALDRAIYLKAPEGLKLPKG FT KSLRLLKSLYGLKQSGKLWNDEIHNYLLELGFERSKLDPCLYFRRSDGKLT FT VLGLYVDDVIIVSQRSSDTDWTMEMLNNQFQIKDMGEAKKCLGICIEQTES FT GIFLQQSANIDQLLTKLGMENCRPVATPMESTRALETEDSEPFFDTDAMRE FT TIGSLLWLSTCTRPDITMPVNYLARFVSSPTTAHWTGIKRVLRYLQGSRGL FT KLAFIKPQGSQQHAKAVIFSDADWAGGKDA" XX SQ Sequence 4481 BP; 1272 A; 1088 C; 1153 G; 968 T; 0 other; tttggttatg agcccaactg cccagccaac tgcgactaat aataatacgc gaagcgacgt 60 cgaagatcaa ggcggaatga atgcacgagg tgctgacgtc tttgctgacg ctcgtgaagg 120 tccacggccg aacacgctgg gtttccctga tgatcttcgc tttgatgaag ccgatcgcga 180 aagtgtagag ctacacagcc agctccagct gatacggcag ctacaaagtg aacttgcggc 240 agtgaggacg caactggacg ctagaacact atcaatgtca gacactagca tggccacagc 300 tcctcctacc cccaagaaac ctaagattaa ggatgttcga tgcccgaact ttaaaggaac 360 cgaggtctac cctggtcttg gcgcaggatt cgagagcttc atccatgaat tcgagcacgc 420 agtcaggaca gaaggactcg tgaatggctc gacatggacg gacgagttca aggcgtcaat 480 aattgtcaac tttctcgaag gtaacgcatc cagacactac cacaagaaaa atgcagagtg 540 gagacagcgt catgaaggag aagacatgcc atactccgag gtgaagcgag cgctactaac 600 agagtttggc tgcaaactta gtcaactcga acttagcacg aagatgcaat gctacaagcg 660 tgaaggcgat tcatggcacg attacgtgga atatttgaac ttcattgaga gcttaatgga 720 gggcgaccag acaaaacttg tcatggaagt atttggcaac aacgcgtgcc ctgagcttgc 780 ccctacgctg ttatcctcaa tatcggagga gtcaacagac tacgccgcgg aaacggaccg 840 catgaagcgc ctgctttata aattgaaggg cgatggtcgc aaaagtggcg ttcagcgtaa 900 aaatcgccac ggagaccgca gtaaatcgca tggtgctcgc aaccacgagc gcaacaatcg 960 ctttattgac cacaatggtg ggggtagcca cggaaataat ggcgactatg ctgctaagtc 1020 aactccccat caaaataacg gtcaagcatt tgctaccact gggaatcgag gcgagatacg 1080 ctgtcacgta tgcggtcaac ctggacacaa gattttttcg tgtccagtgg ttgaacaggc 1140 aaaacgaatg gcgtcaagcg ggaatgctaa catcgcggct gctagtgaag aatgtgagga 1200 agataaggac tcggcacacg actccgacgc tgaagcccac gtctggatgg cggtaaaagc 1260 tactaagcag cctgagcacg atggtacgtg gacagtcgat tcaggagcta ctcaccattt 1320 gtgcagcgac cgtcgtcagc ttttcgcgat ggaaccagct tacttatccg tccgagttgc 1380 aaacggaaat ctcgttccgg ctacagagcg aggtagtacg gttatcactg tgactgtgaa 1440 aggagttaag cgaactattt tgctggagaa cgtgtatttc gcgaaggata tcgatcacaa 1500 tttgatttcg gttggtcagc tgagtaagaa aggcatctcg tgcaccttcg gtgaaaatga 1560 gaagtgcatt attcgaagca aaactggcaa agttcttgcg gaagtgggcc gatctcctac 1620 taacagccta tggtctatcg ggattgagca cggtgcagcc tcattcgcag cgatgacatc 1680 ctctacactc cggcaatggc atgagcgact cggccatgtt aattatcagg atcttgttcg 1740 aatgctcgac aagaagctcg ttgaaggcat gatcgctacg aacaaaaatg tgaatttttg 1800 catgaattgc gcggaagcaa agcaagctcg tcgagctaag aacacgcatg atacttccac 1860 ttcggcccca atggatgaac caggtgcaac actttgtgta gacttgaaga ccgacatgac 1920 tccagatcgc ctaggccata agcacatttt gaccattgtc gaccacgcta caaatttcaa 1980 ccgggtctat ctcctttaca aaaagagtga tgctgaggga aatattgaag acttcattaa 2040 cgagttcgaa cgtcagtatg acatcaaggt gaaggtcctc cgatctgatg gaggtggcga 2100 atttggaagc atgcgccttg atcgttttct gttgaatcga ggaattcgac accagtcaac 2160 cgaggcagga atgtcctcgt caaacggtaa agccgagcgc tttcatagaa ctgtgatgga 2220 ttcggcccgg gcgatgttgt gggcctccgc gttgcctcaa cgcttctggg gtgatgctgt 2280 tctctatgcg agctacatcc gcaaccactt gccgactaga tcgaacgcag accatgcatc 2340 accgatcgaa gctctcacgg gtaaaacacc gagtatctcc cacatactac ggttcggggc 2400 taagtgtacc agccatattg ctcatacagc taagaaatcg actaaaaaac gtgctgagaa 2460 aggaatcatc gtcggaattg acacccataa gaaggcatac aaggttttca tcccgcgtac 2520 caagcgtatg gtgaccacta ctcatattca aaatattgac cgcattgatg cgcgagctgt 2580 ggggcgatac atggatgccg tcgacaaaga acaaatcagg ggtgagactg cggctggcaa 2640 cggcgagcaa gaaaacactc gcaaacccta tgaacaaacg gaagtcaatg gcgtacaacc 2700 cgaggacgcg gaaggcaatc atgagccgag tgcacgcgca atccagcgcg tctttggtct 2760 gaatcgcgga gctcggccgc tcccaaataa cgacttcacg ttgcctcagt cctttatcga 2820 tgagttttcg actccagtaa gtgcgttact cactgtatca cttcaaggcg gagcagcact 2880 atcgactctg ctcgcaggta agaacattac agagccgaca actgtcaagg aagctagatg 2940 cagctcacaa tggccagaat gggaaagggc gatgcaggag gagctgcgag ctattgccga 3000 aaatgcaacg tgggaaattg ttgatacacc cattgacgga aacctgataa ctgcgaaatg 3060 ggtatttaag ctgaagttcg acaacaaggg cgaactcgag cgatttaagg ctagacttgt 3120 cgcacgtggc ttcaaccaga agtatggtat cgacttcgga gaaacgtttg ccccggtgtt 3180 gaagatcgct agtctgcgac ttattgtcgc tttagcagca ctttggcaag ccgtcatccg 3240 tcaaggagac gtaccaaacg catacctacg agccgcgttg gaccgggcta tctacctgaa 3300 agcaccagaa ggcctaaaac taccaaaagg aaagtcgctg cggctgctta agagccttta 3360 cggtctaaag caaagcggaa aactctggaa tgacgagatt cacaactacc tactagaatt 3420 aggcttcgag cgaagcaagc tcgacccatg cctgtacttc cggcggtccg atggtaagct 3480 gacagtgttg ggattgtacg tcgacgacgt tatcatcgtc agccagcgaa gcagcgatac 3540 agactggacg atggagatgc tcaacaacca attccaaatc aaggacatgg gcgaggccaa 3600 gaaatgcttg ggcatctgta tcgagcagac cgaatcgggc atcttcctac aacaatctgc 3660 caatattgac caacttctta caaaacttgg catggaaaac tgtcgtcctg tcgcaacacc 3720 aatggaatcg acgcgtgcat tagagacaga ggacagcgag cccttcttcg acacagacgc 3780 tatgcgagag acaatcggat cgttactatg gttaagcacg tgtacaaggc cagatatcac 3840 catgccggtg aattatctcg ctcgttttgt ttcgtccccg actactgctc attggacagg 3900 tatcaaacga gtgctacgct acctacaagg atcgcgagga ttgaaactcg cattcattaa 3960 gcctcaagga tcacaacaac atgctaaagc agtcattttc agtgatgctg actgggctgg 4020 cggcaaggac gcttagtcta cgtctggtgg cctcctagta atgaacgaca tgcccatctc 4080 gtggtacagc aagaagcagt ctacagtggc cttgtcaacg gccgaagccg aatatattgc 4140 aggtgcgact gcggtgcagg attgcctatg ggtaaaacaa ttgcttgaag agctcaacct 4200 gggcaagaag gatactgtta tcctcaacat cgacaaccag agcgccataa aaaatatgga 4260 gaacgatgtc accacggcac gcatgaaaca tattaacatc aagtttcact tcatacgcga 4320 agccattcgc aacaaggaca ttgaagtgcg ctactgtcct acaacagata tgagggccga 4380 cattctgacc aaacctcttg gcgctacgtt gcatgggcgc aatgtgacta tgctgaagct 4440 ggtcatgtaa aagatctacg gttgttgccg tcgaggagga g 4481 // ID TCA1_I repbase; DNA; PLN; 4838 BP. XX AC AF043301; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans retrotransposon TCA1_I, internal region. XX KW LTR Retrotransposon; Transposable Element; TCA1_I; KW internal region; internal portion. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-4838 RA Chen y.J. and Fonzi A.W.; RT "A temperature-regulated, retrotransposon-like element from RT Candida albicans."; RL J. Bacteriol 174(17), 5624-5632 (1992). XX RN [2] RP 1-4838 RA Chen J., Wang Q., Fu Z., Zhou S. and Fonzi A.W.; RT "Tca1, the retrotransposon-like element of Candida albicans, is a RT degenerate and inactive element."; RL J. Bacteriol 180(14), 3657-3662 (1998). XX DR Genbank; AF043301; Positions 394 5231. XX SQ Sequence 4838 BP; 1870 A; 742 C; 831 G; 1395 T; 0 other; gattagaagc ttggtaaagt tctgctttgc tcaataggtt tcagattcag aaagattgtt 60 aaaacttaga tcatcttcgt tcatcacaaa ccaagaactt tacggaatgt acgaatatca 120 ctttcattag tagataattc gttacttaat ccagtgatta atcttgaggt tcgaaagatg 180 gttaatagaa atttatttga caattacgac taaggttaca taataaatca ttggtatcac 240 ggctatgaaa gcttccaaga tgtgatttta ataacagagt gtttttggtc tcaacagatg 300 agaatacatt gaatttaatg aattgctaac aaaagtcatc aattagtcta cgactgaaat 360 ggaatactat tcatattgtg ttaatgattg acattaaaaa tgaacaaaat aaaaggtatc 420 atagatttta tgctattcaa agtgatggtg gtgttgacaa aacgttttga aaagtaacga 480 tatttggact aaaaaggatt caagaattat gtcattgctg aataattttg gagaacctgc 540 cttaataatt ttatgaggtg tctactatat ggtaaagttt tgatgaacaa aagaaatgaa 600 attataatga ttgccaaatt tgtgcacatt cccattaaag ggataagagt ctacaataaa 660 gcaacagtag ttttcatgaa cactacttaa acaccaagga agaacaagat ctatgaggtg 720 ccatttttaa aaaattaagt tgaaggggaa aatctaaaag tacctatcaa tttatggaag 780 tttatttgtt aatctgtcaa ctatgtgaag gaacgtatag tcgaactact tggtaactca 840 tttcgttaat ccacacatga acgtttaaaa cctaaaaaat gaagtcatac atcttttcat 900 acaatgatct tatcaattca agacatacct ttgtgatgtt ataattttgt aagtcattca 960 aaggggagat ttgcactgaa taactcatct atgctcatac atgctggtat tgaaaaattg 1020 attttcacgt ttgttacctt tcagaagtct atgcattaca atagtgaaaa ttcaatgcga 1080 acccattgct aaatttacca gactcaaaag agaaaatgat tgagataaaa aattacagag 1140 attattcaca aatcgtccag tattgttaag agaaaagtga attagatgat aatcataagc 1200 ataggaatca acttcatgat gtcagataaa cccattatgg tattttatct atcattattc 1260 caacatgata tcccagaata catgtgataa tgaaattcaa taaactggtt aaagagaaat 1320 tttgaaatat ggcttcttta agaaatttta taaaatgaaa agagttgctg aaatccatgc 1380 tattacacac tttttcatat tcctgagaag tgaaagctac gtcacacagt cttcgttaga 1440 taagaactct aaatgttgga atatttgtac caggacatgc ataagcatcc agtcacaatg 1500 gccataaaca tgagaaacct acccaatgaa gactaccaat gaattatata ctgaaaaaat 1560 gtccaagata tgagtattaa ttaactattc accttatgaa tatcccaaat attcagacct 1620 atcataatga ttatttcata gacaaaaatg agtaccaatt ccacattatg agttgttgaa 1680 tgttgtggag tatgaaatta tgatgaacat ccacgtataa attagttgtc gagaattatc 1740 gatcgaacag atattagacc tagagctgat cccacctggc aaccgtacct gatgccgtca 1800 tacatcaagt acaccatact gtacagacac ctgatcatgg ggtgtaaaga taccatgatc 1860 aatcacaccg actattacga tctggggagg gtaattaccc cggacaccag gtgcgcaccg 1920 aaaaattggg aattcgagat cgcgggccta ccaccctaaa cactgcgatt tgatgttagg 1980 tgtaaacgac gaaacatacg ataccgtgat acatcgagga atcatattgg ttctctagat 2040 tccaagatga ttgccacacc atctttacca aaacgaatag ataatcaaaa tgatatcaat 2100 tcagggaaga tgacgttact gcaaagtttc ttaaagcagg taacgaactg aaattatata 2160 agacattgtc ataaagcaaa acaacatgta catgacattg ccgcaaacat tgacttatgc 2220 ataagaaata catcagatga gataagaaac tgaaaaagta atctcatttt ttctacggca 2280 aattttacaa agaagacaat atgggaataa aatagaccat attaccaaat tatgaaatgg 2340 acactctcta aagacttatc aatcattaca agctgctttt aacgtggaat tttctaagtg 2400 ttcgacattg atgttgtttt tatcactatc atcatatttc caaagttttc agggtcgatg 2460 attatagaac aagagctaac ctcaacgaga gcactgtttg aaagcacccg acaccccgag 2520 gattcaataa aattgaggat agaacggtaa aatagtaatc actaacgaag acatgctaga 2580 aatttttaca tgaaagacat tacatttgcc cctatgttca atgaacacga atgaaatttt 2640 ggatatacaa ccacatttta agtaataggt tatgggtata aaactaaact atagctagtt 2700 ggtattggta aaggagaaag gtccaatgac atgattttgt caataagtgc ttcaagaaaa 2760 taatattagc caacggataa gattgatcta gacaggagca ataacaacac gataacactg 2820 ataaattgca agaaccaagt aggtctcaat atttgatggt tattatcact ctttccccaa 2880 caaaagaata caaatgttca aaccaacacc acttcagggg aggagaattt atgaataaaa 2940 ttgatatgaa gtagtggatg atttggaaaa aaattcggta atgttatgaa tttaccaata 3000 gaataagata acattactac ccctgattgg tatattagac agaacttgtg atgatactaa 3060 aactcgaaaa gagatgtttc aagcaggggc atataatgtg caaaatgtca caatgactct 3120 aagattcaaa tggcatcatg atttctgaac taaataccag ccaaacactc tcggttgata 3180 cgtccaattt aaaagacggt caccgaaaac aaagtgaaag taagtgaaat catatgaata 3240 gattcacaag aaatcgtaat ggaaacacaa taatcatttc ataaatcttt gaagtataca 3300 caagaattga ggtcaataat tatctattaa aagactacca caaggttgac tttatgatcc 3360 caatacacca atagaggaga ttgaaacatc ctaggtcaac gtcgaagatg gaaatttgag 3420 acaaagatga ataaaaggtc gaccgataac attgtttgat gaatccaaag agaattggta 3480 cttcaataca ttaaataaag atcttccgtt aaatgtaaga tacgaaattg atgtgaatcc 3540 gttacttaaa tatctaaaga agaataatgc aacttatgag atatgttgaa aacatgaatt 3600 agcttaaatc acactaaagt gagaagtttg attttaagaa acataccata gagtatttat 3660 aatatcgtcc atcctactgc aaaaagacta ttccatgcta tactcaaatc aaaaaactgg 3720 gtacatactt aatgatgatg actaaattca aaccaagtgt caccatttct agatggctac 3780 tcaaaaatga gaatgatggc aaacaaatgg aagatagatc aatgtttgaa ttgcttagac 3840 agagattttg gctaaaacac cagcagacta tgaatgcgga atacaagtga taaagtttta 3900 caacttcacc aaattgtgaa tataatcaat ctggaatccc ggaaatagaa atcaaagatt 3960 gaaaattttt cgaaatcgac taataaaatg catgatttcg tcaaatttaa acaacacata 4020 cgcaaatata ttaaattaga ataccgatgt ggattgaaaa tggaggtgaa tacgtgtaag 4080 tacggttaaa attccacagt tttaattgtg tttcatggca tgtgtcaaga ttatccattt 4140 gcataaactt atcgaaatat tggtagtaag gaaacaaggt gaatgccggc cggatttacc 4200 aagtactgaa actcatatta ggtttggatg tatgaaaatc gagatatctg ataactacag 4260 aaaacacata tactacttaa aaaatacccg aagtcatttt catattacaa tcggatagtt 4320 aaacaagggg agctaacgct caaagagaga gtcacatatt tgaatatgac tgttgacaca 4380 gatctttatc tagtgcgggt tcatagatct agtgctaaga aaatagattg agttaatatg 4440 atcattagtg aatgaagaaa tgataacgtg aagcgatgtt acaagaagat tacgatacaa 4500 aagtgatact tacgttaaaa ttattcagta tttgcaagca tattagatta ataaggttaa 4560 aattaacaaa aaacaattag gtccataagc ccatattacg aaattattct tagaaaaagt 4620 tatgattaat tttcaatcca acattacaat attatctcaa aataaagatg ctaggttaaa 4680 acacactatt gtccttagag aaatggaagt tatgtggagt taaaaaataa tcagtggaaa 4740 gaatcaccga cacaatgatt tgacatcaat tgttgataac aaagtcgcta gaagagatta 4800 aggaatcaat gatgaaccat gattactgaa tcagggag 4838 // ID TDH2_I repbase; DNA; PLN; 5173 BP. XX AC AJ439551; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Debaryomyces hansenii retrotransposon TDH2_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TDH2_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Debaryomyces hansenii OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Debaryomycetaceae; OC Debaryomyces. XX RN [1] RP 1-5173 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439551; Positions 377 5549. XX SQ Sequence 5173 BP; 2034 A; 763 C; 771 G; 1605 T; 0 other; atagattaga agtcaaacta agtgttacac ttcaatgtca gaacaattta cgtattctga 60 tcctactcat gtcaaacatg caaaaaccgt taataacaga gtctatgaat cgagtaatga 120 agaagaaatg gggtcaaaaa cctataaaat ccatcattct aaatcttctg atgtgatcaa 180 taaatttgat tcatcatcgc tattgaaatt taaccaaaaa gaaattgttg ataatgccat 240 tgaacaagca aaagaattgt accaatgtta ctttgagaaa ataccttttg ttcacgttaa 300 tgatgtttca actttgttat tactccaaaa tgcgtttaat aaattgttat caaataacaa 360 aggtcttgga aaattattgt taattaatga tccaacgatc caggactatg gaaaagtaaa 420 gatgtcttca gtatattgtc aaaataataa tctccagatt tggtttcccg tttttagaga 480 attattatct caatcattat tccataaaac actggcgata cagaaatatt atccagagta 540 tgttttttct ttaaactata cgtataaata tattcgtgat aatagagagg tatttgttag 600 tgaaatttta ttaaaactta ttaatttcta tattcatgca atggataatc cttttatgga 660 cgtaactgat atttctgcaa ctgctactta tggaactggt caagaaattg atttggaaat 720 aaatgatttt attaaaaaat tggacctata tcgaataatc ttaatttata aaagacttaa 780 gactaatata aagaacctgg aagcatttat tgatgaatta acatttgctt atcttgagtt 840 tccaaacaac aataacttgc taaatctaga tcaaattatt gtaaatttga aaagaaatac 900 aaggtttatt aaacccaaat attttcagga gaaaactgat aattattcaa acagattcga 960 taataataaa aagaagcaac tgaagaaaaa taataaatat gaacatagga atcaaaattc 1020 ttcaaaggat aatgatgaaa attaacaaat tggtagtcac aatactgata taaaattatc 1080 tagtttttca ataaataata ttatttcaag tgaccaacca atcaataatc agtacatcta 1140 tgataataat aaaatagatg atagcaaaaa ttatgttttc gacagcggag caagcgttac 1200 tgtggtaaat gatataaaac aattaataaa tataaaggaa gatttagaag atagtgaaag 1260 gctattctat actgtttcaa atgtaccaat ttatgcaaaa gctaagggtg atttagttat 1320 aaaaatcaaa aactgcaaat ttacaattaa taacgcttat tatattccag gaatccaact 1380 gaatctaata agtttcaatg atttattgaa taaaggtttt ctaatattat ttgacaacga 1440 ttatttattt cttattaaaa aatctaatgg aaaatgtttt aatattgcaa aacgagatac 1500 gaattctaat ttgtttaaca atattagatc aagagatttt ttcagtatga aactatctcg 1560 aaaaattata gatgaattaa ataatatgaa tcagaaaatt atcaacaaga aaacattgaa 1620 ttatttcaat aataagtaca ttaagatttc taacatgaat catgaaatcg caaacccgtt 1680 taaacgcaaa cgcgatctaa tgtactatca tcttatgggt aaccatatgt ctcttgaaag 1740 tatgaaatac ttaattaaaa gtgggcatat aaaaatgagt tctgaaataa cggcttcgga 1800 agaagaaagg gttaaatctt gtaatgaatg cttagcaatc aattcaaaac aatcctcaca 1860 taaccatact catttcacag cacccagaag gttatttaga ttacattcag atacgttggg 1920 aatatttagt caccgaggca aaaagtatta cattacaacc ttaattgatg aatactccgg 1980 ttacttaaat acaatatggt ctgaacataa atcaattcaa gatttattat ttgaaaaaat 2040 aagaatttgg aataataaat ttgtagatgc aaatgttgcg ttctttcgaa ctgacaatgc 2100 attggagatg cctactaaag atcaattagc agaaatcggt attgaaaaag atgaaattgc 2160 atcttacagt ccagaattaa atggaattag tgaaagaact aatagatcca taattcaatt 2220 tataagaaaa gccctcttac ccatacaaga tactagaact ctttatcttc tacctaagat 2280 tgttgactat gtaacataca taaggaacat gacacctgtt cgttcaaaag gaggtctgtg 2340 tccgtatgca ttattctatg atacgaataa gttccattat aatcctatac aatttggtct 2400 agacgtaatt gttaagttaa gttccacagt ggaagctaaa aagtatggag tcagcaactc 2460 aaaaactagt ccatgtattt tatttggtac atttattggt tacggtacag acgtacacgt 2520 ttataaagtt attttatcta ccaaagactt tccaataata gtgacaccaa atattacatt 2580 aatgaaatca atggataatt taaaagtcta tctaaagagt ctcgattacc ttcaagacaa 2640 agatgctcaa gacatcgata tttcactcgg aaaacttaca gatagaacag atgaaaaatt 2700 atctatagca atagagcata tgaatcaaga tacaatttat gaatgtaatg agtatgatac 2760 ccaggaaagt ctagtaaatt caaactcaac gattcaagac gtagctcaac atatattcga 2820 aagaacacat gaatcaaatt cactaggaat gtcaaatcca gtccactcta attatacaat 2880 ggtgactgat acgtcaaatg attttgatta taccatagag gaaactatga acgaagttaa 2940 tctgaatcca tctgatacaa atgaaacgac aactgattca aatatcacaa aaactaattt 3000 caacgactca ctgaatagta gtgataattc acaacaaaaa tcgtctactc atcaaacgtt 3060 acctcatcca ctggccccgg ataaaaatga tgaaataaat aagataaatg aagatggtaa 3120 tacacattta tcattagagt cgagtacatt atcggaaaag acaccgacaa ctcaaaataa 3180 tgtacgggtt tcaactagaa gtaaaaaagc cattgtagag acggttgaac ccagaggaaa 3240 aataacctca agtaaagatt cgagagttaa aaaggatcca cataaaacat ctttacgcaa 3300 ttcttcaaaa tcctcgaaga aaataaatga cttacaatcg catgcaccta aagtaaataa 3360 gtcattagaa actattccat atactgtcat aactcgatct atgtcaagga aactaaactc 3420 acaatcatcc aaatccaatt ctttagtcac tcggaaaatt aatactgtat atcgaaaagt 3480 cgatttaaca gataacaact ggaagcagtc aatacaacgc gaattagata cttttaagaa 3540 atatgaagta tatacggttg tgaaaaatcc taaaaatgtc aaacctattc caactacttg 3600 ggttcataca cataaaatta acgatctcaa agaagttcag tataaatcac gttgcgttgt 3660 acagggcttt aggcaaattg caaatgaaca ctatgatacc tcgaaggtgt catctcctgt 3720 gattgaatta tccataattc gtttacttac agcgatagca gttgaatatg aatggccgat 3780 acatcatctt gatatatctt ccgcatattt acatgcagat atcgactatg agaaatccat 3840 atttgttaaa ccaccacctg gatcgaatat tgattctggt aaatgttggc aattaaacaa 3900 atctgtttat ggaatgaaac aagcagggta tatgtggtat caatgtataa ctaaggttct 3960 tatggatctt aatttcgaac ctgatactgc cattagcgga atgttttgta aatattttgg 4020 tgaaaataag aagctcatcg ttgcactata tgtggatgat atgtttttaa cttcgtctaa 4080 tattacaatt cttaacgatt tcaaacttga actcgctaaa catttcgacc ttaaatattt 4140 cgctgacata tctgaattct taggaattga attcattcaa attgcagggg ggtatagatt 4200 atcacaacac aatttcttga attctgtaat taaaaaattc aatttaacaa ataattatgg 4260 aaagtatatt ccaataatta aagagaaaaa taaaatttcc gaaactcaac taaagagtga 4320 atttactaat gacgaagtca ttaaaaatga atcattgcta aatgaagaag ataaaagact 4380 atatcaatca ggtgttggtt cgttattatg ggcagctaat aacacgcggc cagacataag 4440 ttttgctgta aatcaattga gctcaaataa tcaaaatccg acatcagtcg atcttgaaaa 4500 attgatatat tgtttacgtt atgtaaaaca aacaatatct tttagtttag agtataagcg 4560 gaatcgattt tcacataaaa agggatcatt tatcattcaa actttttcag atggatcttt 4620 tgcacccaca aaagatagaa gactgattac aggttataca gtttatttaa atggtaatct 4680 aataaattgg tctaccataa ggcagaaggt tatcactgat agttctgcag cttgtgaaat 4740 caatgcacta cattcagctg tgagaagtac acttaaatca agacaagcta tattagatct 4800 aaatttagtt attgatgaaa ttacattatt tgaagacaac gccgcagtta tagcgaactg 4860 taataatgaa ggtacttcat attcaaggcg tatggtcgat atcaaattaa aatttatcag 4920 acagttagtt tctgaaggta tattaaaatt aaaatatgtt aacacaagta ttaatatagc 4980 agatatgtta acaaaggcat taagccgaaa attatttgaa aatcttcgtt cactactatt 5040 tgaaagaaat gatttaaata aagaatagaa tcatttacta tatgtcaaag agtaccaatt 5100 gttttttacc acaaagttag gttttacaat ataaagatct tatgattaaa ctaatctata 5160 agatctaggg gag 5173 // ID Copia-1_PSo-LTR repbase; DNA; PLN; 331 BP. XX AC AAQY01000022; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PSo_; KW Copia-1_PSo-I; Copia-1_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-331 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000022; Positions 199 529. XX SQ Sequence 331 BP; 106 A; 79 C; 93 G; 53 T; 0 other; tgttcatgag tcttcgagag cgccgccaat aaatgcacat ggacgaagag aacgtgtgga 60 cacatccgcc gatgactcgg aggatccgac ggcgacggga gagcctgcgg cagccggact 120 ctggatatac caatggctgg tcagggagac ccaagtatac tgagatcaag tcaatcggaa 180 cccgggagta atccgtctga tgagaggcac caacgagcac aaggaaacaa gaaggaaagc 240 aggaggggaa gactagagag tagtttgaga gacgataaca tttaatctca cttcggaatt 300 tgccccctca accacaagct aaaacccaac a 331 // ID Gypsy-4_SMo-I repbase; DNA; PLN; 8597 BP. XX AC ADFJ01000686; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SMo_; KW Gypsy-4_SMo-LTR; Gypsy-4_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-8597 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000686; Positions 19363 10767. XX CC Positions [6377-6859] - Integrase core CC 'CGCT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1460..5074,5078..7252) FT /product="Gypsy-4_SMo-I_1p" FT /translation="MIVDDDRMCRDFLQSLEGKAATWADSLLPEDQTDFQT FT LLASFRERFVEEKPTNRLLVDLFSFRQGAHETVLDYITRFRAYWKQCWDRR FT VVQDEQQGITAFTAGLRGNLQRKLLKKTFRSCREAFSFATKLERELLVDLG FT IARVDFDQAIIPSESPCATICPSTSKPVAVERTPPALENFANEMRQLKEII FT LQQQSHHDKLLQELVESKKEAATARECRFKSRWCTHCETNTHNTQRCFKLH FT PELQPLSSQRVQQHPFVDNSTQPQGPGTYQEQLERQAIEAAPLSSKGKAPV FT SLVNTILVAEELYRQQQQTAATQAQAKKKVATQPTIDPPAPVESDSPLASG FT PVTQRVACKLPFKSLLSSPPEISPAATPVPEPVLQQLVDTPVTFSLRDMLC FT LVPGFGQHLEKFARSGTPESTLKRTPQEVHIVNMTRYGGDPGPFFVPVQIG FT TSSCRMDALVDSGFGSNIISLEAALSAQLQITESSSIVLKTFANHTVPPAG FT ICYGVKVSVQGVISEVDFLVVDYQRLETSSLKDSIILGRSWQVTAHCTIDS FT AQGKLEISNGTHSATFLNNHGRALSQQAQQARTKMASTPYFPPDLTEVFPE FT LAVASTIYMADASSCNAIDTVGGESGSPRHLSTSLSLFESKAEPLERPSLF FT EGRAYRIRAHISSFSECFLIEEGLLDSFLAWDQLSLMDLDDTVTPDQAHLS FT QDIAELDSPQQLFEVLDSQHFPTKITVADDFEHILSCCFLETEDDIQSHNW FT QEESSKSDVLHASYSSLSSEFPTVEPPVQIQGYYTETLAPDLDWTLVEDLP FT SLAEYLAAVLALDIERSEHQKQREQQTKTLDPTATFLLDSPETVLPDVVSP FT ASLFEEEDTPMITAYFDGALCPKNQVAGIGVWMIDPAENKVADLSITLPAT FT SANEAEYLAAISAMKLATDLKFRLVHFVGDAQLIIRQLTGEYQVHKENLKE FT LWQRAFNLKDEFSEVSFQSVPREENFWADRLSHQAITTMREAKGTPCSLVS FT RVREESKIEPPETKVSPDFRVHAVFLGDDKDPVFIATSLAPTNVAKLLDLL FT HCFKDVFAWDYSQLPGVPMDTIMHSIVLSESAKPVCQKMRRFSPAAHSEMK FT LEIERLLAAGFIYPLESSEWVANLVPARKANGKLRLCIDFRDLNKATVKDH FT FPTPFIDAIVDEMAGHRYYSFMDGFSGYNQIFIHPDHRDLTAFRTPGVFAF FT NVLPFGLCNAGATFQRFMTHAFHDLIGGALRVYMDDLCTTSDSFEDHLMHL FT EQIFTRCRHHRFSLNPAKCKFGVTEGRLLGFDVSQDGIKPQVAKAQEILDW FT NPPTNLKQPRSFLGQTGFFRRFIHNYAARSWPLVALLQHSVPFIWGESQQQ FT AFESLQQSLRTAPVLQPPERQLPFDIYITTGTEAFGVCLCQCSQPGKPPHA FT TYYASHSFKETEKKYVDAEKEAVAVVYTLERFRHFLAGARIHFHVYFNVLT FT FLLQRPVHSPRTLSWIVTIQEFQPTFHMRWKRVMDPSEFLVAEATSFVVPA FT ALQDVAVYLDSGQFTVDSSPVQQKALEIRARGFCLLDGHLYRRTSQEVLLR FT CVGEHEVPELLRAFHSCAGHFSGWVTAQLLLRHGYFWPQIHQDSLAYAKSC FT EQCQRFNPRSHVPRLPFQIITSPGPFFQWGLDFVGLINPPSSKGQRYIIVA FT TDYFTKWVEATPLRQADQQSTAKFVYEYIICRFGVPAVLVSDRGSGFLGQV FT MQHLLQQLQVKHVKSSSYYPECNGQAESSNKILKTVISKLVEDHPRRWHEH FT LVTVLWAFRTSFKTSISATPFSLVYGTEAVLPIEIQVPSLSLSLRYAAAMQ FT LSDEDKLHARDLEVLALEEQRQSTSKHLLQCKQKIKSVIDHQRFAEPFEDG FT DLVLLKEFTPPLKFSPRWTGPYYVQRHIGGGAYVLVDAEGRELPHAHNHSH FT LKRFIR" XX SQ Sequence 8597 BP; 2002 A; 2290 C; 1985 G; 2320 T; 0 other; aatggtgaac ccggcgtgaa gcgcaggact ttctgaagcg tcatttccct cttttctttt 60 ggccgcagag tttgggaagg aattccttgt tcattttgtg gtggttttct ttgatcttga 120 gtgtgttgga taggtctgga gctcctcttt ccagaaaggt atggcgctca tcaagccgtg 180 cagtatttga agagatacaa cgtttcttgg ctcggtcgga tgagcatttt ggggttttca 240 ctttctcgcc tggatcctca gccgaatttc tcaaggtagt gcatttgggc ttgtagattt 300 ggcctagatc tatgagtagt ggtagttctt ggcactagat ttgggagaat tgacggcatg 360 caaaaggatt ttcttctccg gctagattgg gttatctttg tggtaggaat tcatgctcct 420 ccaggcttgg ttttggatgc cgtttatttc tagaggtgct cctggtccta ggctttcgag 480 aagtaccaac ggcgccttag tgtcgatcta catcatggac atgcacatgt ttttccataa 540 tgttggcgtt ctaggctacc tcttcatgga ttttgaggca gtttcttccc aaattcttgc 600 gatataaggt agacggggct gagctctttc caacgagccc accaacaatc aaagtggcga 660 aggatcaaga ctagaggact catttttctc ttttgggtta aacttcgttg agggttcctt 720 gggaacgaag caatcttcaa ggaacaggta accgtaggaa caggaacagg aggagcagga 780 acaagagttg gcgtagaaac agggacaata ggaataggca cagggatagg agttggtgtt 840 ggagcaagtg caggagtagg agcgagagta ggggttaccg gttacaggtc acaggccccc 900 gcttatcggc taccggctac tcccgcggct actccagtgg ctgctctagc gactaccccg 960 gttaccggct accggctact ccagtggcta ctccaacggc tactctagtg gctcctccag 1020 cggctactcc agtagctact tcagcggtcg aatcaaaggc attttgagca acttgagcac 1080 tagcctacaa tcttcttgct cctgtcaacc cagttgcctt gatcgggcat ttgcagtgtt 1140 cagggtattt gatgccggta caaactagac gtatgacgaa ttggcaccct ttcaccatac 1200 ctcaaggccc taaggtacgg agtaaacttt tcaacatcca aaggcagctt aggtacgaca 1260 ctgcaccttc ttgggccgag tcctcttcct cctcgacaga ttccagtgac ttagatctac 1320 gagctatggc gcagccaccc ttagctcgac ctcagctcca tgttctgcaa aaggggagtg 1380 atctgccagt ctttcaggtg ttggaacagt ctctccaaca tcgcatatta gtcgctttga 1440 ttactactgc accacaaaca tgatcgtcga cgatgatcgt atgtgccgcg acttcctgca 1500 gtctctcgaa ggcaaagcag caacttgggc agattctctc ctcccagagg accagacaga 1560 cttccagaca ctacttgctt ctttcagaga acgcttcgtt gaagaaaaac ccacaaatcg 1620 gctacttgtc gacctttttt cgttccgaca gggtgctcac gagactgttc ttgactacat 1680 cacacgcttt cgagcttact ggaagcagtg ttgggatcgc agagtagtcc aagatgagca 1740 acaggggatc acagcattca cagcaggtct gcgtgggaac ttgcagcgga aacttcttaa 1800 gaagactttc aggtcttgcc gtgaggcatt ttcgtttgcc acaaagctgg aaagagagct 1860 tctggtcgac ttggggattg ctagagttga ttttgaccaa gccatcatcc cgtcagagtc 1920 accttgtgcc actatttgcc cgtccacatc aaagcctgtt gctgttgagc gtacacctcc 1980 ggctcttgag aactttgcca atgagatgcg gcagctgaag gagatcattc ttcaacagca 2040 atcacaccat gacaaactgc tccaggagct ggtggagtcc aagaaagagg ccgctacagc 2100 tcgggaatgc agatttaagt cccgttggtg cactcactgc gagacgaaca cacacaacac 2160 acagcgctgc ttcaagcttc acccagagct tcagcctcta tcttctcaac gtgtccaaca 2220 acatcccttt gttgataact ccacacagcc tcagggtcca gggacatatc aggagcagtt 2280 ggagcgacaa gcaattgagg cagccccttt gtcaagcaaa ggcaaggcac cagtctcatt 2340 agtcaacacg attttggtag ccgaggaact ttataggcaa caacagcaaa ctgcagccac 2400 tcaagcccaa gcgaagaaga aggtagccac tcagcctacc atagatcccc cagcgccagt 2460 tgagagcgac tctccgttgg cctcaggccc agtgacacag agggtggctt gtaaactccc 2520 cttcaagtca ctcctctctt ctcctcctga gatctcacca gcagctactc ctgttccgga 2580 gccggttctt caacagctgg ttgacactcc tgtcaccttt tcgctccgag atatgttgtg 2640 ccttgtcccg ggatttggcc agcatttgga gaagtttgca cggtcaggaa caccagagag 2700 cactctcaag aggactcctc aagaggtgca cattgtcaat atgacaagat atggaggaga 2760 tcctggtccg ttcttcgtcc cggtgcagat cggtacttcc tcttgtagga tggatgcttt 2820 ggttgactcc ggttttggaa gcaacattat ctctctcgaa gctgcccttt cagcacagct 2880 acagatcact gagagctcct ccatcgtgct caaaaccttc gccaaccaca ccgttcctcc 2940 ggcaggaatt tgctatggtg tcaaggtctc agtgcagggt gttatttctg aggtagattt 3000 cctcgtggtt gactaccaac gtcttgaaac atcctctttg aaggactcta tcatccttgg 3060 ccgctcatgg caagtcacag cccattgcac cattgatagt gcacaaggca agttggaaat 3120 tagcaatgga acccatagcg ccacctttct caacaaccac ggcagagctc tttctcaaca 3180 agcccagcaa gctcggacta agatggcctc cacaccatac tttcctcccg acctcacaga 3240 ggtttttcct gagttggcag tggcgtcaac catctatatg gcagatgctt cctcatgcaa 3300 tgcgattgac acggttggag gtgagtcagg tagcccgaga catctctcaa cttcactctc 3360 tttatttgag agtaaggccg agcctctgga aaggccctct ttatttgagg gcagggctta 3420 taggatacgg gctcacatat ccagcttttc agagtgtttc ttgatagagg aagggctcct 3480 tgattcgttt cttgcatggg accaactctc tcttatggat cttgatgaca cagtcacccc 3540 agaccaagcc catctttcac aggacatagc tgaactcgat tctcctcagc aactctttga 3600 ggtgttagac agccagcatt ttcctactaa aatcacggta gctgacgact tcgagcatat 3660 tttgtcatgc tgttttttgg agacggaaga tgacatccag tcacacaatt ggcaggaaga 3720 atcaagcaaa tcggacgtgc tgcatgcgag ttatagctct ttgagttctg aatttcctac 3780 tgtggagccc ccggtacaga tccaagggta ttacactgaa actttagcac cagacttgga 3840 ctggactttg gtggaggatc tcccttcgct tgcggagtac ctggctgcag tccttgcatt 3900 ggacatcgag cgctcagagc atcagaagca aagagaacaa caaacaaaga ctctggatcc 3960 aacagcaacg ttcttattag actcaccaga gacagtcttg ccggatgtgg tgtccccagc 4020 atctttattt gaggaagagg acactcctat gattacagct tattttgacg gtgctttatg 4080 ccccaaaaac caggttgccg gcattggagt ttggatgatt gatcctgcag agaacaaagt 4140 agccgacctc tctatcactt tgccagcaac atcagctaat gaagcagagt acttggcggc 4200 catcagtgcc atgaagctgg ccacagatct caaatttagg ctagtccatt tcgttggaga 4260 tgcgcaactc atcatacgcc aacttactgg ggaataccaa gtccacaaag agaacctgaa 4320 agagctatgg cagcgggcgt tcaacctaaa ggatgagttc tctgaggtgt cttttcaaag 4380 tgtcccccgt gaagaaaact tttgggcaga caggttatca caccaagcaa tcaccacgat 4440 gcgagaagct aaaggcactc cctgctcttt ggtttccagg gtcagggaag aatcaaagat 4500 agagcctcct gaaaccaagg tttctccaga cttcagggtt catgccgttt ttctaggtga 4560 tgacaaggac ccggtcttta tcgccacatc acttgctcca acaaatgtag caaagctctt 4620 ggatctcctt cactgtttca aggacgtgtt tgcttgggac tacagccagc tcccaggagt 4680 tcccatggac acaatcatgc acagtatcgt gctttcagag tcagccaaac cagtctgtca 4740 aaaaatgcgg cgtttcagcc cggcagctca ctcagagatg aagttggaga tcgagcgact 4800 tctggcagcc ggctttattt accctttgga gagctcagag tgggtggcca atctcgtccc 4860 tgcacgcaag gcaaatggaa aactccgcct ctgcattgat tttcgagact tgaacaaggc 4920 aactgttaaa gatcactttc caactccgtt tatcgatgcg attgtggatg agatggctgg 4980 ccaccgatac tactctttca tggatggctt ttcagggtac aaccagatct tcattcatcc 5040 agatcatcga gatcttacgg cctttcggac accttagggc gtctttgctt tcaatgtcct 5100 cccatttggc ttgtgcaacg ccggagctac ttttcagcgc tttatgaccc atgcctttca 5160 cgacttgatt ggaggtgcct tgagggtgta tatggatgat ctgtgcacga cctcggactc 5220 ctttgaggat caccttatgc acttggaaca gattttcact cgctgccgac accacaggtt 5280 ttcattgaac ccggcaaagt gtaaattcgg ggtaaccgaa ggccggttac tgggctttga 5340 cgtctctcag gatgggatca aaccccaggt agccaaggct caggagattc tggattggaa 5400 cccaccaacc aacttgaagc agcctcgcag tttccttggg caaacgggtt tctttcgccg 5460 tttcatccac aattatgctg cacgttcatg gcctctggta gctttgctac aacacagtgt 5520 tccatttatt tggggtgagt cccaacaaca agcctttgag tcactacagc agtcactccg 5580 cacggccccg gtactccaac caccagaacg acaacttcct tttgacattt acatcacaac 5640 gggtacagag gcttttggag tatgcctttg ccaatgttca cagcctggca agccaccaca 5700 tgcaacatat tatgcctcac attcgttcaa ggagactgaa aagaaatatg tggatgcgga 5760 aaaagaagca gtggctgttg tttacacctt ggagcgattc cgtcactttc tcgctggagc 5820 ccgtatccat ttccatgtct attttaatgt gctgaccttt cttttacagc gaccggttca 5880 tagtcctcgt actttatctt ggattgtgac catccaagag ttccaaccaa cttttcacat 5940 gcggtggaag cgtgtgatgg atccaagcga gttcctggtt gctgaagcta cctcctttgt 6000 ggtcccagca gcattacagg atgtagcggt gtacctggat tcaggtcagt ttacagtaga 6060 ttcctcacca gtacaacaaa aggcattgga gatccgagca cgggggtttt gccttcttga 6120 tgggcacctt tataggagga cttctcagga agttttgttg cggtgtgtgg gggaacatga 6180 ggtccctgag ctccttcgcg ctttccactc ttgtgcaggg catttctcgg gatgggttac 6240 agcacagctc ctcttgcgcc atggctactt ttggcctcag attcaccagg acagcttggc 6300 ctatgcaaag tcatgtgagc agtgccaacg gttcaacccc cggagccatg ttccacgtct 6360 tcctttccag atcatcactt ctccgggtcc ctttttccag tggggacttg acttcgttgg 6420 cctgatcaac ccaccgagct caaaaggaca gcgatacatc atcgtggcga cggactattt 6480 cacaaaatgg gttgaggcca cccctttgcg acaggcagat cagcagtcta cagcaaagtt 6540 tgtctacgag tacatcattt gccgatttgg agttcctgct gttttggttt ccgatcgtgg 6600 cagcggcttc ctcgggcagg tgatgcagca tcttctccag caactacagg tcaagcacgt 6660 gaaaagcagc agctattatc cggagtgcaa tggccaggcg gagtctagca acaagatatt 6720 gaagacagtc atctcaaagc ttgtggagga tcacccaagg cgttggcacg agcacttggt 6780 tacggtgttg tgggcctttc ggacatcctt caagacatcc atctctgcga ccccattttc 6840 ccttgtctat gggacagagg ccgtacttcc aatagagatc caggtgccat cactctcgct 6900 ttcacttcga tacgcagcag cgatgcagct tagcgatgaa gacaagcttc atgcacgtga 6960 cttggaggtt cttgccttgg aagaacagcg acaatccaca tctaaacatc tccttcaatg 7020 caagcagaag attaagtcag tcatcgatca ccagcggttt gccgaaccat tcgaggatgg 7080 cgatctcgtt ctactcaagg agttcacgcc acctttgaaa ttctcccctc gctggaccgg 7140 cccctactat gtccagcgac acattggagg tggagcatat gtgctagttg atgctgaggg 7200 acgtgagctc ccacatgctc acaaccactc tcatcttaaa cgcttcatcc ggtgaggcat 7260 tccttttctc ttctttttct ttttcttttt cttcctttct ttcactttac tttcgtggct 7320 acttttctta ctttcagagg gtgtttctcc attggaccgt ggcctatgcc ttggatttcg 7380 tgctcaggct gcattgccgt ttgtatggag gttcctcgct tggctcggtc tatgttccag 7440 gttctttggc ccttccttta tcattactat accctgcaca tttcccacac tcattccata 7500 taatctacac tcacagttcc atcaccaatc acttccaaca gcgttgcccg cacttatctc 7560 tagatgccca tcttgcatct ttcattcttt caccatcatt cccatctcca tttgaggtca 7620 catttacacc ataccatgga tgcacataca tgcagcaaaa gacaccacct catttggacg 7680 tgccatgtcc aagatgtcct ttcgaccatt tgccgacaac gcactagctt ttctgaagcg 7740 actttcttcc aaccaggtga acctgttcac tcaaggcacc taggtggatc tttaggcgag 7800 gccacagaag ctgaagccac tttcttctgc tccagcactc agtggacaca tgccacctct 7860 ccttaccggc aacccagtga ctatgccgtc cttttcagct gctgacttct tcagtccgac 7920 acatcagact agccaccttc tcagagatct cagcgctcca ccatggagct ggcacaggag 7980 taggagcgag agcaggtggt taccagttac tggttacagg tacccggcta ccggttatca 8040 gttaccggct actccgagtg gtcagtgttt actctacggg ccaacggtta tcaatggcta 8100 ccacttccga gtgccaccac catctcggcg ctctaccata tcactccatc tttcatcatt 8160 tccacactta ccacccttgg gcaacgcatc ccctcttcta cctctctttc tttctcgatt 8220 tcggccaatc cttggagcat accgggagtc atcaagaggt tgcatttgca tattacactt 8280 tcctgagccg aaatccaggt acaggttaag ttctttgggt actcacgttc tttttcctct 8340 attttcctcc tcttttcaca ctttttctac acttttcttc aacttcaggg tccagtttga 8400 ctacagggtt tcccaccggg ttttctccct gtctccaaac ttctcaccta ccttttttct 8460 ttcttttcca ctctgttttc tagagtttct actatttcac gcagttacca gcacttggca 8520 tcagtagcaa acgtacactc tacactcttc ggagggttct cgcgcgtctg gagccagcgc 8580 gatccaccgt ggtcgca 8597 // ID Sola3-3_PS repbase; DNA; PLN; 6043 BP. XX AC . XX DT 28-JAN-2009 (Rel. 14.02, Created) DT 28-JAN-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola3 DNA transposons from Phytophthora sojae. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW Sola3-3_PS. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6043 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(1271..1336,1340..1876,1780..3642,3726..4115, FT 4356..4994) FT /product="Sola3-3_PS_1p" FT /translation="MDDSTNGGYVLSKPNLLDLSVHFINLCFCIMHARFDN FT GCANISTQARLPKITCGCDAARCRREDCLKCSKCDCEHDGRSISTKMSGRV FT GRPVRKKLNFRHLSDSSEVVPAYGCSDDVETHAGGSYGDCGGNAHLNDGYP FT ESPPLVASISGRSNSSGLYSVSVCGSSDDENGERILPLSVPIHVRRSVELV FT KLPHLAISQVCKWRTNLAPECADTCTPVRRTRKTTAPSYFASLLSPPPLTP FT TPTKRSLPSWQAAMKFFGESEDDVVYIAKKLPGLSVRTTMPLWSSEVRLTS FT DQLKRRKVIMKLYLRLLTYIAATLCGSEAAGASIHTFAKWLAPTEAKVADS FT DEMILISSARAILSTKKNSIERRTLRAVMCASVPYHRLTLLSRTMPRFSIS FT RPAYSRAIDEYEHLVIKGNLRKEPWSRARVKNECADAAIKFILAADNVAFL FT SWGSKRIQRDGVTYEVPSIARKKSISLMFSQYKSSQQGLTTLERTTFYKLC FT SVLTHGTVQSRRAVDYVTGELLNDTMEIMNRVITTFLPDQVDILARHLQLV FT KTWLKYGSFSDVDKSFRDKSYVPTKTCSRHQIHFGLLAPAPEDIPTQNACC FT SACTGLKKVTDAILEHLKCGNASEEALAVVADCYHKFDLFMGHRLRVVNQQ FT RALHDILQNMRQRSIDGLGSDEILLVIDFKMKVEPMYFREKTTDHYGKRGM FT TWHGAMARFWTLESNGEDDARVPVENKVYFDHISAGDNKQDREAVVEFLEA FT VILSIKRDLPKVTRITVQSDNAPSYQNTMVALMLPVLARAHRINICRFIHT FT ETQDGKSMLDAHFAQGMIKIRDSRISRVPADATAKLREELAPLEKSFGKLT FT GRVNDLFYEYPAPSDTDDTSRTAGSFCLEDSLNFSVRAFAYSGAGEGTHIA FT VDSKTMRCYRQDASGQSDDWTNAEIVNQRSDEADGNDDNELRGLDGRDCTR FT SSLLVMKHAGDLTVIESSELASKMIQLVREYTGSEDVLVILEQGWARRPAK FT GCMYGANYVAFYKADIARLFQQGVANKSDKLGPRRMLESIQEKYPWRFDFP FT SSSQIRAEISKLMKAQKETVHQEDSQNPVRNASGSSAEGNPPGKRSSKRKI FT MDSTYVTFINRLMDSYPDLLAAQAIQHFRTAFPQAQSVEDATIRNRVNRIK FT RQKTG*" XX SQ Sequence 6043 BP; 1624 A; 1421 C; 1523 G; 1475 T; 0 other; cagtgcctcc taataataac tttacactga ggggtggaag gctggacacg gcgacgccaa 60 cgaaagcgca aaccgatacc aaatttctcc cacgtactca tagcggcatt aaaacagaaa 120 ttgtagagtg gcaaggtcca ggcgtttgtt cttcatccgc tggacggcga caaagctgca 180 atacaaacgt ccagttattc ctgtgttccg ctgtctgatt agcggatatg tgccacacca 240 agtgtaccta gcggacatta ttgcggtcca ctgtgccaca ccaggtacac atcgcatatc 300 agcggcttcc aaagatcccg agacggcatg gaagaccaac atggatcgct gctgtccacg 360 atgttaagct aaggacacga agcctgcggg gtgcagccgc ctttcacaac gtaccaacga 420 catcactgcg tcgccgggta aaaggcttcg ccaaggttgg aaaagccaag tggacgtaca 480 agctacctta cacgacagga agaacacgat agtgtgctgc aagctaagct actcgccaac 540 gactccaagc acccgataca acttgccgaa ctgagaaacc tggtacagca aactgctttg 600 agccatcaag acggagacat ccccccaacg tttccgaatc agaaatggct acgaagattc 660 atggatcgca acccgcaact cgcccaatgc atcacttatg ccaagttatc tgctattacc 720 aggtctatcg tattgtcagg ctacctcatt tatatatctg tgaagattca actaatgtga 780 cgctataatt gtgcttgtcc cttacgaata cagcgaacag cacgggcacg accacaacgc 840 caagcagcag gcgcagcgcg aggaggccac gctgccaccc gacttcgctg tggacgcgga 900 ggtcgaggac ggagactccg aaaggtgcgc caacttgctc gagcgcagtg gatacatcac 960 gagctaatcg gagttggtgt ctttgtatgt gggctgtggg ctgtggttgc gggaactaag 1020 cagcaatgag cacgatcacc acgccgaaga gcaaatatgt tcatggttgt tctggttttc 1080 ggttgggtta cttgtattga atgttgcgat cgctgttttg ttgaaataca tcgtcaagaa 1140 gaccgaaaga gggattgggt ttcggaaaag aagacaaaac ctccaggcgt tcggtaatga 1200 agcggtgggt tgcgccgtat tggtctgggt ttttggcagc tgcggcactc ttctggattc 1260 gagtttcagc atggacgata gcacaaatgg agggtacgtt ttgtccaaac caaacctgtt 1320 ggaccttagc gttcactaat tcatcaactt gtgcttttgc atcatgcatg ccagatttga 1380 caatggctgt gccaatattt ccacacaggc acgcctacca aaaattactt gcggctgcga 1440 tgccgctcgt tgtcgaagag aagactgctt gaagtgtagc aaatgcgact gtgagcacga 1500 cggacgatct atttcgacaa aaatgagcgg ccgagttgga cggcctgtcc gcaagaaatt 1560 gaatttccgt catctcagcg attctagcga agttgttcct gcatacggtt gctctgatga 1620 tgttgaaaca catgcgggtg gtagctacgg tgattgcggc ggcaatgccc atttgaatga 1680 tggatatcca gaatcgccgc cgcttgtggc gtcaatctct ggtcgcagca atagcagtgg 1740 cttgtatagt gtaagtgttt gtggaagttc ggatgatgaa aatggagaac gaatcttgcc 1800 cctgagtgtg ccgatacatg tacgccggtc cgtagaactc gtaaaactac cgcacctagc 1860 tatttcgcaa gtttgttgag cccgccaccg ctaactccta cacctacgaa gcgaagctta 1920 ccttcatggc aagctgcgat gaagtttttt ggggaaagcg aagatgatgt cgtatacatc 1980 gccaagaaac tccccggatt atctgtgaga acaacaatgc ctctgtggtc ttcggaggtc 2040 aggttgacgt cagaccaatt gaaacggcga aaagtgataa tgaaattgta tttacgtctt 2100 cttacctata tcgcggcgac attgtgtggg tctgaagctg cgggagcgtc gattcacacg 2160 tttgcaaaat ggttagctcc aacagaagct aaggttgctg atagtgatga aatgattttg 2220 atttcttcag cgcgtgctat attgtcaacg aagaagaact cgattgagcg acgtacgctt 2280 cgagcggtaa tgtgtgcctc cgtaccatac catcgtctta cgcttctttc tagaaccatg 2340 cctcgcttct cgattagccg tccagcatac tcgcgcgcta tcgatgaata tgaacaccta 2400 gtcatcaagg gcaatttgcg gaaggaaccg tggtcaagag caagagtgaa aaatgaatgt 2460 gctgacgctg cgatcaaatt tattcttgct gctgacaacg ttgctttttt gtcgtggggg 2520 tccaagcgca ttcagcggga tggagttacg tatgaagtcc catcaattgc aagaaaaaag 2580 agcatatcgc tcatgtttag tcagtacaaa tctagccagc aaggtttgac gacattagag 2640 cggacgacgt tctacaagct atgctcggta ctgacccatg gcacagttca gtcgcgtaga 2700 gcggtggact atgtgaccgg ggaactattg aacgacacta tggagataat gaatcgcgtc 2760 attaccacat ttcttcccga tcaggtggat atcctcgccc ggcatctaca actggtgaag 2820 acatggctga aatacggtag ttttagcgat gtcgacaaat cgttccgcga taagtcgtac 2880 gtgccgacta aaacctgctc tcgtcaccag atacactttg gattgttagc ccccgcacct 2940 gaagacatcc ctacgcaaaa tgcctgctgt agtgcttgca cgggtttgaa aaaagtaact 3000 gacgcgatat tggagcatct aaaatgtgga aacgcatccg aggaagcgtt ggcagtcgta 3060 gcggattgct accacaagtt tgatttgttc atggggcatc gtctccgagt tgtgaaccaa 3120 cagcgggcac ttcatgacat cctgcaaaat atgcggcaac gtagtatcga tggtctcggc 3180 tccgatgaga tccttttggt gatagatttc aaaatgaaag tcgagcccat gtactttcgt 3240 gaaaaaacca ctgaccacta tggaaagcga ggaatgacgt ggcacggtgc catggctcgc 3300 ttctggactc tggaatctaa tggagaggac gatgcgcgtg taccagtcga gaacaaagta 3360 tacttcgatc acatttcggc cggtgacaac aagcaagacc gggaagctgt tgtagagttt 3420 ttggaggccg tcatactatc tatcaagcgc gatctgccca aagttacaag aatcacggtg 3480 caaagtgata acgctcctag ttaccagaat acaatggtcg ccctaatgct tcctgtactt 3540 gcgagagcgc accgcataaa tatttgccgc ttcatacaca ccgagaccca ggacgggaaa 3600 tcaatgctcg acgcccactt tgctcaagga atgataaaaa tataatcatg ggtccagcag 3660 ggcaacgact gctacacacc gaggcagctg gtagatgcct tatctgctga tcaaggttta 3720 tttaacgcga tagcagaatt agtcgagtac cagcggacgc tacagcaaaa ttgcgcgaag 3780 agttggctcc attggaaaaa tcgtttggta agttgacagg acgggtgaat gatctatttt 3840 acgagtaccc agctccaagt gataccgacg atacttcgag gactgctggc tccttctgtt 3900 tggaagattc gctgaatttt agcgtgcgag cttttgcata ttctggagct ggtgagggga 3960 cccatatcgc agtggattct aaaacgatga ggtgttatcg ccaagatgct agtggccaaa 4020 gcgatgactg gacgaacgca gaaatcgtta atcagcgctc agatgaagcc gatggtaatg 4080 acgataatga gttgcgtggc ttagatggtc gagattaaaa tacgatcgcg gacgaagatt 4140 ttgtgtcgga tttagagatc gatgatcgtg ttgtggagtc gaggtcggtt tctatatcac 4200 tcctataaca gtgacaggtt tcgttactgg ggtcgagcta atcacctcgt caaaaatgag 4260 aaggcgaacg ccacccagtg tcagccacgg ccactctaat atctcgccca catggaacgg 4320 ggaaaaactt gaattcagtg aaaaggatat tttagtgtac gcgaagcagt ttgttggtga 4380 tgaagcacgc cggagatctc acagtgattg agtcatcaga actagcgtct aaaatgatac 4440 aattggtgcg tgaatacact ggaagtgagg atgtgctggt tattctggag caaggttggg 4500 caaggcgacc cgccaaagga tgcatgtacg gagccaatta cgttgccttc tataaagccg 4560 atatcgcgcg tctctttcaa caaggtgtgg cgaataagtc tgacaaactc ggtcctagaa 4620 ggatgctcga gtctatacag gagaagtatc cctggcggtt cgattttccc agcagcagtc 4680 aaattcgagc cgaaatttcc aaattgatga aagcccaaaa agaaaccgtg caccaggagg 4740 actcgcaaaa tcccgttcga aatgcatcag gatcgtccgc tgaggggaat ccgcctggga 4800 agcggagctc aaagcgtaaa atcatggata gtacctacgt aacattcatc aaccggctta 4860 tggactccta tccagatctt cttgccgctc aagcaataca acactttcgt actgcgttcc 4920 ctcaagccca atcagtcgaa gatgcaacca ttagaaaccg agtcaaccgc atcaagcgcc 4980 agaaaactgg atgaattttc tagtttccag tattttgttc aacgttacca tttgaatatt 5040 atctacaact cagctaactg aatacatcac catggtaact attctaccac cacaaaaata 5100 tcaaatagcc cctcatgtaa caaacgcaac gagaggtaca cactcttcag tgtcaaaatt 5160 gtgctcattg ctgcttagtt cccgcaacca tagcccacag cccacataca aagacaccaa 5220 ctccgattag ttcgtgatgt atccactgcg ctcgagcaag ttggcgcacc tttcggagtc 5280 tccgtcctcg acctccgcgt ccacagcgaa gtcgggtggc agcgtggcct cctcgcgctg 5340 cgcctgctgc ttggcgttgt ggtcgtgctc attgctgctt aggtccgtag ccacatctca 5400 cacaaactct gcaatgcaga aatctacggt aactgtgtat accgatatgc tgagccttga 5460 gacctcagtt ttgcatcatt ttctaccatg ggcattgttg gagctactgg ctcgcatcat 5520 cgtaacgcta tttgggctag accctcgtag ttatcagcaa gcgttggcaa tacagttgaa 5580 gtgggataga cagggggtcc aagtgataga ctgctgacag ttgaataact aatacaaagt 5640 ggtagatggc tgcatggagg cgatgcggta gaagtgctcg tgtaatatgg tagagtgtgg 5700 aaatcggggg ccggctagct gcattgcgcg cggtcacctt cgttcaggag tgcaacaaga 5760 aattgtgctc attcccgtat aaatactgcg acttttcacc gtgactcttc agccaaacgt 5820 taaacatgtc aattactata ggcgtcaagg tgcactcgga gtgcacgcat tgtgaacgca 5880 ttgtccactc ttgggggacg aattccagtt gttagtatca attaaagttg gtcttcatca 5940 cggtaccgtt aaaaaaaaaa ttcggagccg attccgatgt tatcgaccaa gcacgttcca 6000 ccccatgcga ccattactgt aaagttgtta tttggaggta ctg 6043 // ID Copia-3_SMo-I repbase; DNA; PLN; 4539 BP. XX AC ADFJ01002177; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_SMo_; KW Copia-3_SMo-LTR; Copia-3_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4539 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01002177; Positions 9094 13632. XX CC Positions [1568-2068] - Integrase core CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 29..2704 FT /product="Copia-3_SMo-I_2p" FT /translation="MAPSSSLTLEVYDGKDFQSWKTQMLFYFMEKDLWSVI FT ESSLKPEDDADEKKEWDAKNNKALGVLGRGLGKKYRSYLDIDKTAKENWDA FT VCAILGTTTRARLLELKLQLNSRKQGEAESVSDFASALVDIAKQIDAVQMK FT DFDEDELITAFFKGLSGPMQLAGSHHLSSSNTFSQIVADLTALEGFLKSGQ FT ASSNEKELALFAGKGKRSVTVWDRLGPTNDQGESSKPEKFKKKKKNDRCNI FT CKKPGHWARDCTDEEAKKAKEARKAEAKRLAARKNKSANFARTAESSEEDN FT QEDVDDHGSLFMATSIQQVAKNTLGTEAEVVYLDSGANKHMTHLRKFFTTL FT KKVPGNKRIFLGDDYSYKVEGVGTIDIKLPTGQIASVKNVYYVPGVNKTLF FT SVGKIADRDLEITFTKKMCAITDVNGNGIACGSRQAGLYQLNAEVVQPVKA FT FFAGTKKAADLQIWHRRLGHTNLQDIKELAAKEMVKGLSITSSSAMKFCEP FT CALGKHHRLPFPQIATNRAKEPLALIHSDLSGNMPTLSRDKKLYFVTFIDD FT YSRIVAVKFLQLKSEAFQKFKEYKAQVELQTGKRIKMLRSDGGGEYTSKEF FT ASFCISSGIQRQFSIPDTQQQNGVAERMNRTLQEAARTLLRDSGLPNSFWC FT EAIATAAYLRNRQLTAAVSGKTPYEAWYGVKPDVSHLRVFGSICYAHVLKK FT HRDKLASTSQKCVLVGYADTMKGYKLFNLETQKMIVSRDVIFEESRTYATR FT NLLPPPQFSPTEVAADDSEESENEFPVRARAITRGRAEGTNFQLGHAQSHE FT AELKEPARGMEAATRMIQEATRTVQRAWMVLEAIQMEVRACSLKLKACHST FT QQALEPVGALEQQTQSAARKTTVVSALLAGPGLKIVRAV" FT CDS 2887..3864 FT /product="Copia-3_SMo-I_1p" FT /translation="MEEEGEQGENQLLLLFSHGRDALVPKTMEEALAGPDA FT DQWRTARQAEYSSLMENKTWDLVELPPGRKVIKTKFLLRLKTGPDGDTRYK FT VRFVARGFSQVEGVDFYETFSPVVKLASIRLLYNLAAHEDMHVEHMDVTTA FT FLNGDLEEEVYIEQPAGFIAKGREHLVCKLKKALYGLKQSPRAWYAKMNSF FT LLALGFESLSADTNVYIKQVGALLVLLALYVDDCLLLSKSKKLIHQLKKDL FT SSRFKMVDLGSVKYCLGIQIFRDRRKGTLEMSQKKYIEELLQKFRLSDVNS FT ASTPMEVGMHLSKDMAPQTEAAKAVMERIPSGRW" XX SQ Sequence 4539 BP; 1326 A; 1030 C; 1247 G; 936 T; 0 other; ggatcacgtc ccactctgaa aaagaaagat ggcaccctca tcttccttaa ccttggaagt 60 gtacgatggc aaggatttcc agtcatggaa aactcagatg ctattttact tcatggaaaa 120 ggatctctgg agcgtgatcg agagcagcct caagccagag gacgatgcag atgagaaaaa 180 ggaatgggac gccaagaata acaaagcttt aggggtcctg ggacgaggcc tcggaaagaa 240 atatcgaagc taccttgaca ttgacaagac ggcgaaggaa aactgggatg ctgtgtgtgc 300 gatccttggt acaacaacca gagcaaggtt gttggaacta aaattacagc tgaacagccg 360 taaacagggg gaggcagaat ccgtaagtga ttttgccagt gctcttgtag acatcgccaa 420 gcagatcgat gcagttcaaa tgaaggactt cgatgaagat gagctgatca cagctttctt 480 caaggggctt agcggaccaa tgcaactcgc agggtcgcat catttaagtt ccagtaacac 540 tttcagccag atcgtagccg acctcacagc gttggagggt tttctcaagt cagggcaagc 600 gagctcaaat gagaaagaat tggcactctt cgcaggaaag gggaaacgat ctgtcacagt 660 gtgggacaga ctaggaccaa cgaacgatca gggcgagagc agcaaaccag aaaagttcaa 720 gaagaaaaag aagaatgatc gctgtaacat ttgcaagaaa ccagggcact gggcacgaga 780 ttgcacagac gaagaggcca agaaagctaa ggaggctcga aaagctgagg caaagagact 840 ggcagcaaga aagaacaagt cagccaactt tgccaggaca gcagaaagta gtgaggaaga 900 caaccaggag gatgtggacg accatggcag cttgttcatg gccactagta tccagcaggt 960 tgcgaagaac actcttggca cagaagcaga agtggtgtac cttgattctg gggcaaacaa 1020 acacatgaca cacctcagga aatttttcac cacgttgaag aaggtcccag gaaataagcg 1080 aatttttctt ggcgacgact actcatacaa ggtggagggt gttgggacga tcgacatcaa 1140 gctgccaaca ggacagattg ccagcgtgaa gaatgtttac tatgttcctg gagtgaacaa 1200 gacactcttc tcagtgggaa agattgctga tcgtgatctg gagatcacat tcacaaaaaa 1260 gatgtgtgca atcacagacg tgaatggaaa tggaatagct tgtgggagca gacaggccgg 1320 tctctatcaa cttaatgctg aggtggtgca gccagtaaaa gctttttttg ctgggacgaa 1380 aaaagcagcg gacctccaga tatggcacag gagactcggc cacaccaacc tacaggacat 1440 caaagaacta gcggcaaaag agatggtaaa aggtttgagc atcacttcat caagtgcgat 1500 gaagttttgc gagccgtgtg cactcggtaa acatcaccgg ctcccttttc cacagatagc 1560 cactaatcgt gctaaagaac ctctagcact gattcattct gatctctctg gcaatatgcc 1620 cacactttcc agagacaaga agctatactt cgtgaccttc atagacgact actcacgaat 1680 cgtagcagtg aagttcctcc agctcaagtc agaagccttc cagaaattca aggaatacaa 1740 ggctcaggtg gagttgcaga caggaaagag aatcaaaatg ctaagaagtg atggaggtgg 1800 ggagtataca tccaaggaat ttgccagttt ttgtatttcc tctggaatac agcggcaatt 1860 ttcaatccct gacacacagc agcagaacgg tgtagcagag cgaatgaatc gcacacttca 1920 ggaggcagca cggactctct tgcgagactc tggcttacca aactcgtttt ggtgtgaggc 1980 catcgcaacg gcggcatact tgcgtaaccg ccagctcaca gcagctgtat cagggaagac 2040 cccatatgaa gcgtggtatg gtgtaaaacc agatgtgagc catctacgtg tttttggaag 2100 catttgctat gcgcatgtgc tgaaaaagca cagagataaa ctcgcaagca caagtcaaaa 2160 gtgtgtcctt gttggatacg cagacacaat gaagggctat aagctcttca acctcgaaac 2220 tcagaaaatg atcgtgagca gggacgtcat ttttgaggag tccaggacgt atgcgacaag 2280 aaatcttctg ccaccgccac agttttctcc cacggaagta gctgcagatg actcggaaga 2340 aagtgaaaac gaatttccag ttagggcacg cgcaatcaca cgaggcagag ctgaaggaac 2400 gaatttccag ttagggcacg cgcaatcaca cgaggcagag ctgaaggagc cggccagggg 2460 aatggaagcg gcgaccagga tgatccagga ggcaacgagg acggtgcaga gagcgtggat 2520 ggtgctggag gcgatccaaa tggaggtgag ggcttgctcc ctgaagctga aggcttgcca 2580 ctcgacacag caggcgttgg aaccagtggg agcgctagaa cagcaaaccc agtcagcggc 2640 gaggaagacc acggtggtga gcgcactgtt ggcaggacca gggctgaaaa tagtgagggc 2700 agtttgagac gttctggccg tgagcgcgca ctcacagagg ctgggcgtca atacagggag 2760 cagctggaca tacaagcagc taagcgggct tctcggcaag aaaccaaggc tgctagagac 2820 agatcagtga cagtgccaat tcctgagacc tcctacgatc cagcctttta ttttgccaac 2880 tctagcatgg aggaagaagg ggagcaaggc gagaaccagc ttctccttct cttcagccat 2940 ggccgagatg cacttgttcc gaagaccatg gaagaagctc ttgccggacc tgatgcagat 3000 cagtggcgca ctgctcgtca agctgagtac agctcattga tggagaacaa gacctgggat 3060 cttgtggagc tgccacctgg gaggaaggtg attaagacca agttcctctt gcggctcaag 3120 acaggacctg atggagacac gcgctacaaa gtcagatttg ttgcgagagg attctcacaa 3180 gtcgaaggag tcgacttcta tgagaccttt tcaccagtgg tgaagcttgc atcaattcga 3240 cttctctaca acttagcagc tcacgaagac atgcacgtcg agcacatgga tgtaacgacg 3300 gcgttcctga atggtgactt ggaggaggaa gtctacattg agcaaccagc cggatttatt 3360 gccaaaggac gagagcactt ggtgtgcaag ctcaagaagg ccctctacgg cctgaagcaa 3420 tcgcctcgtg cctggtacgc aaagatgaac tcgtttcttc ttgcccttgg cttcgagagt 3480 ctctctgcag acactaatgt gtatattaag caagtgggag ctctcctggt gctgttggct 3540 ttgtacgtgg acgactgctt gctcctcagc aaaagcaaga agctgattca tcaactgaag 3600 aaagatctca gctcgagatt caagatggtg gaccttggga gcgtcaagta ctgtcttggc 3660 atccagatct tcagagacag gagaaagggc acactagaaa tgtctcagaa gaaatatatt 3720 gaagagctcc tccagaaatt caggcttagt gacgtcaact ctgcatcaac gccaatggaa 3780 gttggcatgc acctcagtaa ggacatggca cctcagacgg aagcagcgaa agcagtgatg 3840 gagaggatcc cgtcaggcag atggtaggca gtttagtcta cctcatggtt tgtaccaggc 3900 cagacatcgc ctattcagtg ggagtggttt cgcagttcct ggcaaatccc ggcttccagc 3960 actggcaggc agttaagcgt gtgttttgtt acctgaaggg gacagccgat tatgttttgt 4020 gctacacaaa acaagagcag cctcaactta agctacaggg attctcggat gcagactggg 4080 caggggaagt tgatcagcgt aaatcaactt ctggctacgt cttcagcctg ggcagcgcag 4140 cagttacatg gagcagccag cggcagccaa tcgtggctct ctcgagcaca gaggctgagt 4200 atatcgggac gacccaagca gccaaggaaa ttctttggct caggactctg ctgaacggtc 4260 taagctacga gcaacgggag gcaacggttc tgcattgcga caatcaagga gctattgcct 4320 tgacgaagaa tccaagattt catcgcagga caaaacacat ccaggttcag tttcatttta 4380 ttcgtgaaca ggtagcgatg aagaaagtgg aactcgtcta ctgtgctacc acggagatgg 4440 tggcagatat attcacgaag gcacttccac cagcagtgtt cgcgcgacac gcacaagctc 4500 tgggcgtgaa gaaaagaagt atcgcgagct caacttgag 4539 // ID Copia-2_SMo-LTR repbase; DNA; PLN; 169 BP. XX AC ADFJ01001872; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_SMo_; KW Copia-2_SMo-I; Copia-2_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-169 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01001872; Positions 10576 10744. XX SQ Sequence 169 BP; 26 A; 42 C; 43 G; 58 T; 0 other; tgttagagcc acgtggcgta cagccacctg gcttgagtcg catttcttca gtttagggct 60 ttcttagttt tctttcccat cctgtgtgag atccatccca ggggattgtt ctgggagtgt 120 tctcattctc tatagagtgc taggccgtga ggcctggctt ctctcatca 169 // ID Gypsy-26_PSo-LTR repbase; DNA; PLN; 945 BP. XX AC AAQY01000890; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_PSo_; KW Gypsy-26_PSo-I; Gypsy-26_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-945 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000890; Positions 66595 67539. XX SQ Sequence 945 BP; 228 A; 285 C; 292 G; 140 T; 0 other; tggggtcgta cctcgcggaa gaagtgggcg ccgggcgccg gaggaagaag gcgccgggac 60 gcgagtgatg gacttcgacg cggctgatgg aacgcgacgc ggattgatgg gcgcgacgca 120 gggccgagct cgacgggaaa gtcggcgtgg gtgatgggcc gtgagacacg gtgccagaat 180 ccagtgcgac gcgtaatcat ccgacgggtc gaccagcgca cccggttctg caaaacgcgc 240 cgaccctaaa ccccgccgac caaaacgtgc cgaggtaaga tcttgattgc gccacgcaaa 300 tcaggttgaa ggacggcagt gcaagcacga cagaagtagg gataggcaca gaacgatagg 360 cttagcaagc agtagtacgg agtagccagt agctagggca taggataggg taaggactca 420 gtcccgaaat ttctctgaac cacaaagacc tcccgtcttc tccgaggttt caggggaacc 480 accaagcgcc ggcaagtaga gccgcctcga tatcgcggcc ccccgtcgtt tgctggttcg 540 ggtgctcacc ccccacagac ccgtgctgga acaaaggcgc gttaaacgta taccgtttag 600 gtgggcgccc gataacgcgc tgcctaggcg aaggaccgca ccggcctgat aaccgccgtg 660 cacaagaccc cccgtgtagg cccgataacg ccgcacgccc gacgggaact ccgaggaaac 720 gccggcccga taacgccgca cgcccaaggc tcgacgtcct acgacaagga acaagcgtca 780 acacaagaac ccccaactcc gaagcctgcg aagacttggg cctgtatttc gaagatacgc 840 tactccaaca accgggaata atttgctcgg cgcgaccgct atccagacgc gccgagtttg 900 tgcgagatcg cattcgcgag atttctgcga gggcgctact ccaca 945 // ID Gypsy-32_PSo-LTR repbase; DNA; PLN; 530 BP. XX AC AAQY01000598; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_PSo_; KW Gypsy-32_PSo-I; Gypsy-32_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-530 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000598; Positions 39188 38659. XX SQ Sequence 530 BP; 118 A; 142 C; 156 G; 114 T; 0 other; tgtcccgtgc cggggtatac cgaccccgtg ccaggcatcg gggcggcgga ctcgcgtgtc 60 ggctggagtg ccgaaatggc tacatcctac gaggggtacc gattgtgagg tactcgagtt 120 gctgccggaa atgatggcgc gacgcgcgtg tgaggtggga ctcttggagg tccgtggacg 180 tctccatccc cgctcgagga cgggtgtcgt gcgtacgaaa caacggaata tggtgtgaat 240 gcggaggggt tgtcgtgccc aaggacgaag ggtacacctg caactccgag aagcgcaagg 300 agaggtattg accttaggat cgagggcccc tcggcttgta gattcagtcg taaatcttcc 360 ctctcttgtg aacaacaaca accacaaaga aagcttttgt aacaactaca acgttatctt 420 tagttgaagc tttcactcgt ctaaacaccc agtcaccttc gaccccgtgt aggccccttc 480 tttccaaaca gtcccagcgt actcgaccct gacggtggag gtatacgaca 530 // ID Copia-37_PIT-LTR repbase; DNA; PLN; 259 BP. XX AC AATU01001186; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-37_PIT_; KW Copia-37_PIT-I; Copia-37_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-259 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001186; Positions 8589 8847. XX SQ Sequence 259 BP; 62 A; 62 C; 64 G; 71 T; 0 other; tgagacctgg acgacgcagt ctcagaaacc agaagtcttt ttagtattgg tagccactcg 60 cccgttagat acttggttaa tatttttatt tctaacggag tccaccaagg gtggagctcc 120 agcaattccc aatctaccag gtgtggggcg agtagtgtgt taacgcttac ttcttccgtc 180 gtactcactg tccagacatc gtacacgacc tctgcaagtg aacgagtagg agacgttcgc 240 tgttagggtt atgagccca 259 // ID Gypsy-4_ES-I repbase; DNA; PLN; 10098 BP. XX AC CABU01005135; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_ES_; KW Gypsy-4_ES-LTR; Gypsy-4_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-10098 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005135; Positions 12971 2874. XX CC Positions [8248-8730] - Integrase core CC 'CAAT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 4509..5633 FT /product="Gypsy-4_ES-I_5p" FT /translation="MLLLKEPEPTPPSPTPPPAPGVPKDRTGEPEIRVSEA FT NTGQLGHQSRLRLLELLARAKAKGLFPVNPTIVAALPGREVPIPLIDENVT FT PVACKQQQYNPVQAEIVNKQADLWLETGVIRHSTSAWCSRTSIVKKKDGTE FT SPSTIDRSTLSPRRIAEAWARRRQCTNASRGVTSSPYLTCPQPIISSPSRK FT PTATRRPSEMRAVACTTSRDVDSASRRSPQSSRPTSATLSARSRTKVASNA FT GLMISYCTARHWRSTWPSSRRFSTFCMRWGIRYTSGIPCSACRSWSFWVPW FT SAGPGCGQHRPKSRRCRSWKCPRRSGKCGHSWASPATSGASFRTSAPSPHP FT SRTSCVTRHSAQSGRITARCRGEPHRQRPFMQ" FT CDS 7996..8931 FT /product="Gypsy-4_ES-I_1p" FT /translation="MSLQTKTCSGTPRVACVCDCCAQTARARGVSAGTWYP FT GTARTTLLIERKSHWPTLKKDVRAYVLSCKCRRRKRAWSKQFLMMPARLLQ FT PWEVLEIDIQDKKVTSDKNNRYLLVVVDRASKFLAASPLPSKEAIGVSRKL FT LDLILMFGLSLSIRCEPGGEFTAEVIQHFCGWLRVSLDYGPTNHSRAQGAV FT ERLGGWLHETLAQLCISWPRRWDDFVPVATWIHRVTPDASLPGGASPYRIL FT FGHEPRSHIDSMTQALDDDSFGQGLERTVTDQQRMTQEILSQRHEACNRKS FT QAITRGLDENHQVLKLKLEA" FT CDS join(2217..3275,3279..4388) FT /product="Gypsy-4_ES-I_3p" FT /translation="MVMTVEDLQHLMNRAVALCFPQRVDQGPFHAYLVSVM FT EHTRHLLTQHPVDSHALGSSQMRLRDDLCKDCYRKFVTTLGQNSYYYAQPS FT SQPAGKAMSALQPHSQRLPPGQDTFSRQAKQRGSSLALLEGKTARVPLSVD FT PQDSTSDSDADGGDAHVAAVDTAGDGPPATDAAPRAPFDRRTTRPAGQSRL FT QDFRKRERTRGQAGDAGTGVRDSRRQRRTESQAPQPATQPATRGQPAERGL FT PSDAPQLAADASAPDADQKQIQKYIMLHGVCFNHVRGLPCQRMMHDHHCRY FT LHTAEPIPFKAYPRPLARNATTLVAAVQEYDENLLYAADAFASWTDSCGHD FT AAQDAPDASAWCALESTSLRDSLGNTPPHRGRKPEDEAACVAVSAAAPASV FT AKPSKGSHQTWVTAYLWNTAQRWRGYCTTVLLDTGAAGGSYASVAFIHAVE FT DTEYDGRCIVSKRGRGFLRAANPTNSGVAPMQIVGTANLPLVFPPVDRVFR FT ARVRVVDGLPFGLILGAAFMRYYNSVIDLDDPGFFKPTRDSAHVPLLRPKP FT PPKSRPWRERQHTLNGLLALQLAGADNWCSVPGWRASRFGVRSGRARCAET FT GNILPAAVTPPATVGAGPPPESFCEAVWHTEEHETDGGEELVLLPQLAAAD FT ATDLGVAAWEDRGSLRWPMILTHTQTLAGRVSAEVEASLPGPQPDKAQLLV FT VFPLGLFDIENDTEIGIAKGVQW" XX SQ Sequence 10098 BP; 2048 A; 3304 C; 2910 G; 1836 T; 0 other; tggtacacgt acggagccac gctttgtttg agtatgtgcc actccgagcc atccttacca 60 gaacctttgg tccgtcgccg agtgacacca atgcgacagg aacccagtga ccacccaaac 120 ctaggcgatt tcgaacttca tactgcactt gcttccagaa cccatacaca cggaatgtta 180 cgttgacccc atccggaaaa cccggtccac acttgttgcc cgcagtgccg cgtacaacat 240 gaaccagaat gatgacgccg tcgccaacca caaccgcgac gagagcgaga atgatcaact 300 ccctgactta cacaccgatt cggacgtccc ttcctcggac gcctcgtcgt ccgccgacac 360 tgagtcgatg acgttcgacg atagtgatga tcatgaccta tccctcctcg acgacagtaa 420 ccctacgacc tcgacctctg cgacaaatga ggccgaagct cagatggatg ccttgcagct 480 agatgaagga gctaccgccg tccaaaccaa cggcgatgcg caagccgtag tcaacaacgc 540 caccatgcct gcgcattcgt cgggtactgt caatcattcc cgtcggtggc acgccctggt 600 caaccacgct atccagcagt ggctcaacga gggctaagtc ctacccagcc gtaccccgtg 660 gggtgacgac cgctgagtcg ccccacatcg actacatatg tgtgttgtga gatgctgttg 720 cggagcttaa ggggggaatg ggtgttaaca atcaaaacat gaacaacaat aaaaagaaag 780 aaaaggggga gtgtggacat gctcactttt gtgtgtacga cgtgacgtcc gatcgactgt 840 gaatagctgt gcattgacgc cgccgacgac aatcaacgtc gtcgtccgac accggcatct 900 tcgatctgcg gcgtctccgt cggcatcatc aacctacggc gtcctcacgg gcatcatcga 960 tctacgacgt ccccgtcaat cgacctcacc aatcgccatc gtcgacccgg aggcagcttc 1020 gaccgatcaa gatcaaccag caacctctgc acggacatca acccaaccct gaggcagccc 1080 aacctgccct aggacaaggg ggacaagggg ggggggcgcc tcagccgccc ccgctgcatg 1140 gcggagcgcc tcaccttccg ccaccgccgc cgccgccggc cgcgggacac ccccctccgc 1200 cgggaggggc cggaggtgtg ccgcccgccc cgctgggtgt cccccccccg cacctaccac 1260 cggtaatgct gcccctacac ggtggagccc agcaccagcc gcttgggcag catctgcagc 1320 agcaccagcc cccgccgccc caacaccttg ggcagcagca accccagcct aaccagcagg 1380 gtctccagca ggcggagcct tatcgcccgc cagcccgccc ggcgtaccaa ccgccgcccc 1440 aggcggggat gtacgtccac caaccttacg gtggctacgc gtacgccccg gttcaaccgg 1500 cctatcccta cgagccgcac cagccatacg gagggtacgg cgcccagccc cacgtgtacg 1560 cgtccccccc ggcgtctctt cccccccccc caccaggtgt tcgctgtcga cctcagccaa 1620 cacaagcagc gggaggacat cgccaacaag gtgacgcgca tgatgggtgg ttcgatgaag 1680 acctttggga cgcccatctt ccaagaaccg ccggtcactc caccgctgga gctgcacttc 1740 cggcagcacc cctgcctgtt ccgtgagcgg ctgacggacg ccttcaggat ggtcggcatg 1800 ggaatcgtct gcctggagga ggacgccccg accaccgctg gtgcggggaa cgtcatgaag 1860 ccctggcctg acgaccggac tgccctgcgt ttcagcatcg tctatgatat gttccccacg 1920 actatggctg tcacggctgc catcgcccgc ggtcaggatg tccaggttca taacctcaac 1980 gggggcatgg cgtgggtgcg ctttcagcac ttttccgtca cggacgccct tcgactcttg 2040 gtagcggaaa catcgcgcca tggtatctcc ggccgccatg cggcgcacgc cctggacaac 2100 aacagcctac aggagggggg tcttgggaga cgggcctcaa tcgcctagca cgcactgcac 2160 gcgctgcgag cgtcctccct gatcgcccct acctgtccga agagccatac ttttagatgg 2220 taatgacagt ggaggacctg caacatctca tgaaccgcgc ggtggccctc tgcttcccgc 2280 agcgcgtgga ccaaggaccg ttccacgcgt acctcgtcag cgtcatggaa cacacccgac 2340 acttgctcac gcaacacccc gtcgactcgc acgccctggg ctccagccag atgcgcctgc 2400 gcgatgacct ctgcaaagac tgttatcgca agttcgtcac caccctgggc cagaattcgt 2460 actactacgc ccaaccgagc agccaaccgg cgggcaaggc catgtcagcg ctccagcccc 2520 actctcagcg cctgcccccg ggccaggata ccttctcgcg ccaagccaaa cagcgcggct 2580 catcccttgc gctgctggaa gggaagactg cccgcgtccc gctgtcggtg gacccccagg 2640 attcgacttc ggactcggac gccgacgggg gcgacgccca tgttgctgcg gtcgacactg 2700 ctggggacgg acccccggcg accgatgcgg cccctcgggc cccgttcgac cgtcgcacta 2760 cacggccagc gggtcaatca cgccttcagg acttcaggaa gcgggagcgg acgcgtggcc 2820 aagcgggtga tgccggcaca ggagtacgcg actcgcgtcg ccagcgccgt acagagagcc 2880 aagcgcctca gcccgcaact cagcccgcaa ctcgagggca gccggccgag cgtggactac 2940 cctccgacgc cccgcagctc gccgccgatg cgtcagcacc cgacgctgat caaaagcaga 3000 tccagaagta catcatgctc catggggtct gcttcaacca cgtgagggga ctcccatgcc 3060 aacggatgat gcacgatcac cactgtcgct acctgcacac cgctgagccc atccccttca 3120 aggcataccc gcggccgctc gcccggaacg cgaccaccct ggtggcggcc gtgcaggagt 3180 acgacgaaaa cctcctgtac gcggctgatg ccttcgccag ctggacggac tcctgcgggc 3240 acgacgcagc gcaggacgcg ccggacgcca gcgcctgatg gtgcgccctg gagagcacct 3300 ccctgaggga ctctctgggg aacacaccac ctcatcgtgg gcggaagccg gaggacgaag 3360 ctgcctgtgt ggctgtctcc gccgccgctc ccgcctctgt tgccaagccg tcgaagggct 3420 cccaccaaac atgggtgacg gcgtacctgt ggaatacggc ccaacggtgg cgcggctact 3480 gcaccactgt actgctggac acgggagctg cgggcggatc ctatgcttct gtggcgttca 3540 tccacgccgt ggaggacacc gagtacgatg gtagatgcat cgtctctaaa cggggacgcg 3600 gcttcctgcg tgctgccaat cccaccaaca gtggtgttgc gcccatgcag atcgtcggca 3660 ccgcgaacct tccattggtc ttcccaccgg tggatcgagt cttccgtgcg cgtgttcgtg 3720 tggtggacgg attgcccttt ggactaatat tgggtgcagc cttcatgcga tactacaaca 3780 gcgtcatcga ccttgacgac cccggcttct ttaagccgac gagggactcg gcccatgtgc 3840 ccctcctccg tcccaagcct cctcctaagt ctcgaccttg gcgtgagcgc caacacaccc 3900 tgaacggcct tctcgccctg caactggcgg gcgcggacaa ctggtgcagc gtaccaggtt 3960 ggagggcctc caggtttggc gtccggtccg ggcgggcccg ttgcgcagag actggaaaca 4020 tcctgccggc ggcggtgacc ccccctgcaa ccgtaggcgc cggaccaccg ccggagagct 4080 tctgcgaggc cgtctggcac accgaggagc acgagacaga cgggggggag gagctcgtct 4140 tactgcccca gctagcggcc gctgacgcga cggacctcgg tgtggcggcg tgggaggacc 4200 gaggatcgtt gcgctggccg atgattctaa cccatacaca gaccttggcg gggagagtga 4260 gcgctgaagt ggaggcgtca ctacctggcc cccagccaga caaggcgcaa ttactggtcg 4320 tgttcccgct tggactgttt gacatagaga acgacacgga gatcggcatc gccaaaggtg 4380 tgcaatggtg aactcctggt atcgcgccta aactgaagtt ggttaaccgc gccaccagct 4440 ccaagaccat caagcaaggc gtgcaggtgg ccacggcgta cgccactaac tgcgacgaca 4500 tcgagcggat gcttctcttg aaggaaccag agccaactcc accctcgccg accccgccgc 4560 cggcgccggg cgttcccaag gacaggaccg gtgagccgga gattcgtgtg agtgaggcca 4620 acacgggaca gcttggtcac cagagccgcc tccgactgtt ggagttactg gcccgcgcca 4680 aggcgaaagg gttgttcccg gtcaacccca caatcgtcgc cgcgttgcct ggccgcgagg 4740 tgcccatccc gctgatcgat gagaacgtca cgccggtagc atgcaaacaa caacagtaca 4800 acccagtgca ggccgagatc gtcaacaaac aggccgacct ttggctcgag acgggcgtga 4860 tccgccactc cacgtcagct tggtgcagcc ggacgtcaat tgtaaagaag aaggacggca 4920 ccgagtcacc gtcgactatc gaccgctcaa cgctgtcacc aagaaggata gcggaggcct 4980 gggcacgtcg gcgacaatgc accaacgcat caaggggagt aacttcttca ccctacttga 5040 cctgccctca gcctatcatc agctctccat caaggaagcc gaccgccaca agacggcctt 5100 ctgagatgcg cgcggtcgcc tgtacgactt cacgcgatgt ggattcggcc tcacgacgat 5160 ccccgcagtc ttctcggccc acctcggcga cactctccgc ccgatcgaga acaaaggtgg 5220 cttcgaacgc tggcttgatg atatcctact gcacagcgcg acattggcgg agtacctggc 5280 cctcatcgag gaggttttcg accttctgca tgaggtgggg tattcggtac acttccggaa 5340 ttccatgttc tgcatgtcgg agctggagtt tttgggtgcc atggtcggca ggtccggggt 5400 gcggccagca ccgtccaaaa tcaaggcggt gcaggagctg gaaatgcccg cgacggtcgg 5460 ggaagtgcgg tcattcctgg gcctcgccgg ctacctcagg ggcttcgttc cggacttcag 5520 cgccctcacc gcacccatca cggacctcct gcgtgacaag gcattcagct caaagcgggc 5580 gcataaccgc caggtgccgt ggggagccgc acagacagag gcctttcatg caataatcaa 5640 ggcccggtgc tcgcagtccc ggactggaac ctgccattca ccctgcacac agacgctagc 5700 gagctagcgg caggagcggt gctcacccag cctgtggata actgcgaggc ccctctgggc 5760 tacgccagcc accgcttcac gcgaacggag gagaggctgt cccctaacga ccgcgaggtc 5820 ctcggggtgc tttatggcat tgaacagttc cgcacgtatc tgtagcaccg tcgtttcact 5880 ctcgttaccg actgtgccgc cctcacgtgg ctgtttacta gtcaaagcct ctcatcgaag 5940 atgcaccgat ggtcgcttcg cctaatgcaa ttcgacatcg acctcaagtg gcgaaaggga 6000 gaggatcaca cggcaccgga tgcactctcc cgcctacgtc gcaagggccc accggagccc 6060 cccgtcaaca cagcattccc ggacgacacg tcaaacgcgg cgaacatcca gagccccgcg 6120 ggaccggtgt tagatagcgt accgctgcga acgctgtcat ccccaccagc tggtgaggag 6180 aaggtcctgg atggtgtttc cctcgccgcc ctgggattac cggagacacg gggccaatca 6240 gaaatacccc tacgtgtgtt ctatgcactc cagatcacgc cagagctccc tgcgagtgac 6300 gaccactacc gcctccagaa ctgcgaggat gcccgcgccg cgttggcccc tagactcccc 6360 cgagcggttg ttcttggctg tggagccggg ggggcactca tagcctttcg gggcctgttg 6420 cacgttgaag ccgccatcga accggactgg actacgctgg agtgtgcccg cactaaccac 6480 tggagtgacg acgtacccat ggttcgggcg cccctcacgg gtacccggtg catgcaggtg 6540 ttagcctagg ttagaccagc aatcctcatc ggcaatgccg accgacgcta cgaccttgag 6600 cgccgcggcg acactgctgc ccgccagacc gcggccatag tagacacctt catagcctca 6660 agggcacagc tgctgctggt cgagtgcccg atggggttta cgagaacaca ggtatggcga 6720 gaaagactgc ggccgcgtct ggagctcgct cggtgctctg tggaggatgc ttccctgtat 6780 gccacggacg ttggagtgcc cacggggaaa cagcgagtgc tcgtcgtagc ggtcaagcac 6840 cgcccaagcg cgccggctga agcgctttcg gtgaagctga ccaagtggaa gacccgtctg 6900 caacaccgca cacctgaccg tctcacggta ggcgcgttcc tgggacgtga cggctgttat 6960 ttcctgaagc gactcccagg agacaaggag atctttagct tttctaaaca gtcgatcacc 7020 ctcactcatg ggcacatcat gggccgacgc ccgccgcctg acgagtacca gccacacccc 7080 gcggacggcg gccccttcgc taattcgcga gacctatctt gggaggactt cgtgatgctc 7140 accacgacgc aggaggactt catggtcccc ccgactgttc gcaggataga cgcggcgtgg 7200 gcgctcgagg agtttccctg ccggcgatgt tatgcgaggc cgtcaacgga ctcgggatac 7260 ttggtgtggt gcacaggaac gcggactcgc gaagcagtat ggaggaagag ctttcgctat 7320 cccttgctag tctctggttg gacccggcgg atgcaacagg tgcggaaggc atgacggctg 7380 ctattgcacc gagcgaggag cctggtgttg cggagccacc ctttgttgtg ataccacgag 7440 tcacacgagg catggcccgc cgggcggcac aaccgccgcc tgacgcctcg gcttctcctt 7500 ccccccccgg aagtccgacg actaccacac gcacggatgg cgacagccgc gcgcaagccc 7560 cgcggacagg aaaggcgccg gcccggcaca tggtgccccc accttcgacc cggacatcgc 7620 cgccatcgcc cgagcccacg tcacctccgg cgccggcacc accgttagcg cctgaacccg 7680 cgtcaacgct gccaccgtcg gccccactgc cggcaccgcc gtagtcgcca acgactgcgc 7740 caacgcctct gccacggcca tcccctacgc tgacaaccgc agcgacaccg gcgtcggatc 7800 cagacggcag acactccacg gatgaccacc tctctctgga cacatcggaa ctgcgccgag 7860 gcctctccac tcagctggcg cggatggagg acaccctgcg agacacggct caactcgtag 7920 aagcgcagcg tcaggatgct ttcctccagc cgttgaggag tgagttggag gctggacgag 7980 gtgaagatag cgagtatgtc cttgcagacg aagacctgct ctggcacgcc ccgtgtggcg 8040 tgcgtatgcg attgctgtgc ccaaacagct cgtgcccgcg gtgttagcgc tggtacatgg 8100 tacccgggaa cggcgcgcac aacgctcttg atcgagcgga agtcccactg gccgacactc 8160 aaaaaagatg tccgtgccta tgttctatcg tgcaagtgcc gtaggcggaa gcgtgcgtgg 8220 agcaagcagt ttctcatgat gccggctcga cttctccagc cctgggaggt ccttgagatc 8280 gatatacaag ataagaaggt gacctcggac aagaacaaca ggtacctgct tgtcgtggta 8340 gatcgagcat ccaagtttct cgcagcttct cctttgccgt cgaaggaagc aatcggtgtc 8400 agccgcaaac tgctggacct tatcctcatg tttggactgt ccctgtcgat tcgatgcgag 8460 cctgggggtg agtttacggc agaagtgata caacactttt gcggctggct gagggtctct 8520 ctggactatg gtcccaccaa ccactcccgt gcgcaaggag cggtcgagag gctggggggg 8580 tggctccacg aaacccttgc tcaactgtgt atttcatggc ctcgccgttg ggatgacttc 8640 gtccctgtag ccacctggat ccaccgcgta acgccggacg cgtccctccc tgggggggcg 8700 tcaccctacc gaatactctt cggtcacgaa ccgcgtagcc acatcgactc catgacgcag 8760 gccctcgatg atgattcctt tggtcaaggg ctcgagagaa ccgtcactga tcaacagcga 8820 atgacacagg agatcctcag ccaacgccat gaagcttgca accggaaaag ccaagcaata 8880 acgcgagggt tggacgagaa tcaccaggtg ctaaagctga agttggaagc ctagtactag 8940 tcaaggaacc aattaacacg ctccaccgcg acagtcttca tccgaagttg gcccatgaac 9000 actacactaa cccgtggaag attatccatg tcatccgaga ccgcctgttc ttcaccgttc 9060 aactgcatgg gcgacgagtt cgtcaacgcc gagtcgcggc caccgacatc aaaccgtact 9120 acccgcgagc tgagcacctc cgactcccgt ttgaagatga gtatgcacac ctcgtgtggt 9180 cggctgactt gggtttagcc gacacttccg tcgtcgccgt ccctctgtac acgctggtgg 9240 acacatggta ctgggaacac ttcgtcatgg acgtgggaat atcagggccg tttccaagat 9300 ggtgcgttat caccctggat ggctgaagac gaggcgagtg acagcttttc tccactgcaa 9360 ctagacatct tccacgccct gtacgaggaa taccatggtg cggacaccat gccaagacct 9420 gccagttcac cgctgagggg cgcacgtgag gccgcgtccc gggaacatgc cttgcagctt 9480 ttccgatagg cacaccggtg ggcagggaac tcgtcgacaa tgaaggtcaa cccaaggttt 9540 tcaaagccac cgtgttctac tactgcgacc cctactggcg agtggaatac cctgatggcg 9600 actgggagga actgaccaag cgcaaagtgg atgcgggcgt cggtattgcc gcccgtcctt 9660 cattttccgc ttgactttgt tcctgtgtgt gccactgcct tgagcctacc gactgtttgt 9720 ctggcagtct gggggtgtgt gatggcagtg gaggaacatg agaagtatca tgcgcgattt 9780 tttatgcact gccgtcatcg taccgatcgg tggagaatgg atggaagaga ttcaagatcg 9840 ccttctccac tttggtccac gagattcaag atcaccgtct cctggtccaa gatcgagact 9900 ctccttccta gattatgtct ttgcggacta tctaggaagt ggagggtcgg actctccctc 9960 ctagattatg actttgctga ctaactaaga ggtggagtta ctctcctttc taggtgtctt 10020 tgaggactac ctaggaagta gagagtcgga tcgcccgtcc tttagcataa ccgtttgcca 10080 cggtcgatgc tggggggg 10098 // ID HOLN3_EA repbase; DNA; PLN; 408 BP. XX AC AB016150; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Equisetum arvense LINE retrotransposon HOLN3_EA, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; HOLN3_EA; LINE; KW endonuclease; long interspersed nuclear element. XX OS Equisetum arvense OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Equisetopsida; Equisetales; Equisetaceae; OC Equisetum. XX RN [1] RP 1-408 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016150; Positions 1 408. XX SQ Sequence 408 BP; 117 A; 70 C; 84 G; 137 T; 0 other; ctggaatgcg cgaggtctca atgacccttt gaaagttgag aggattatgg atggacttgg 60 gtattataat cccgacatta ttcttatgcg agaaactaaa attagagaca atcttaacta 120 atttactttg tggaatcctt tttagaagtc ttatcatgtg atttactccc caactcaaga 180 gactagagtg ggattagccc ctttgattag gaaggatttc actttggata gcatagatga 240 agtttggcct agttgtattc ttagaactga cattataatt gataagggtg tgatgtctat 300 tttcaatatt tatttccatt ccaactctac ttccatcata gctaaaatgt ggaacaaact 360 tggggagctt caagttaatg gccattggct tttccccggg gacttcaa 408 // ID Gypsy-19_PSo-I repbase; DNA; PLN; 11832 BP. XX AC AAQY01000101; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PSo_; KW Gypsy-19_PSo-LTR; Gypsy-19_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11832 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000101; Positions 12126 23957. XX CC Positions [7392-7733] - Integrase core CC 'CTGG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1070..5551 FT /product="Gypsy-19_PSo-I_1p" FT /translation="MELERSTWFGEGPRVRRMEWERKRGEVADQVAPSDEE FT VAVRRRSGWALEAARWRNAHATYNGPTASRTPGTGTAPPAPTAAPSTSWRG FT ASGLSPSAYNLSTMVSHAVKVLPMFHSDTATVEKARDFWELFEDHTDGFPD FT RSRLLVFRQKLRGREADRWWNNSRIKSFRMLKVRFHNQFLSRMADELWELL FT ENTKRQRGESVEEWGDRVSDLCESLDYPNPQMRYQLFRRGLRNKRMLATLD FT ASPASDIPEACEWLMFEDMHRPIEEDDEFSDSESKKKNKKSEEAPATTAVE FT ALAEQMKSFMEQQQQWQQQLMQRQWQPPRSPRNRAPVVAATPATQPAGNGR FT GPGNAQPFRGIRMGDDSRTQDGSPVCGRCNFMGHGRATCKRASMGCRRCGA FT FGHIAVEWDRPQNGGGQTAAAGGTQAPSGCVFYQDASHSVMQCPVLAELRD FT ATPSLLNAAAQSNPTRRQWRGREEAEEGATPFSSLEDGSGGDRRRQARRRR FT SAVTARKTVDKVVKSSVNEGSVEEERVEAPRAEVEVETVAGAREEWIVPSG FT VSVEEEYEREQGRTVLSVREEGEAECWTELSVHGENEESVAEEPAYCYEEK FT AAWAVASDEEEKMYPAGKTATEESAEQDEPSARVNGAWAHDGAALDGNDEE FT AKEAEAAKLDAPAGDGDPASGPDRSPERGVGNEEGTAAETVDSAYDEDRSA FT RSEESAYSEEEEVDGDVFYAASADDEAFCAAPPSANIPYKVPTEEVPPPTE FT LRAVPRSVTAAPLRSILKKEGPRPRWMTEEPSFEGWGGAVDVGDTLFAEWN FT DDGGSPAGEHIAEKNVNVVVGPEPVAGPATELAVAEEDRGAAAESKEVPES FT SEVVEAAKDVKEPPRHARLFTDEELDDMECEAPKPSVPGISEEIEEYDKEL FT EDRLHPLDEVELMRKVKENAERAKGPSMEEMSKFLGVPVEALTKMKDASPE FT GTSSPEYWEDWYRNTLENSAEAKRANRDFKQSLVSCVSLERSTEETTYESF FT GLSESDLGQKASTVSVDGSVMEDSVTANIAVPVDVCEENSEEMVTAVSVNP FT PVAAPEPSSSASPSERSEARKAVHFLLKETKDEMLRAKKSVVDPLGEGVTV FT EIPPIRDKPPDLDWVRLVHDVEQVAGENEDQIYWREPVKKWTNEYYNENAT FT YIWNKLLDRVREAHSASAKRRLRRRSRRPVCFDFTALYRDSAEALDGELRP FT EEDDDATHYVQVVRPERPPPERGRKTGMVEVVTVNLPDGFGVRADKDDDEC FT GAELPRVVAGGRRVVCTVGNFEALSCGYIDCLPSQMLADTGATLSLVDFRV FT LKRLGRAGEALEAYDGRVRSSSGHRLRIRGWITLPLMLGKVGMTMRMLVAD FT KLHVDTILGVDALGAFGAVIDVAERTLMLKSTGEVLSLGVMVVHESFMATM FT AVSVRLPPRVQALVVTDVVGDAPNATVLVEGSLNLPPSLCVAITLCTVDDG FT RVVVEVCNASTKEFWIKKGTVVASTIIAS" FT CDS 6084..7988 FT /product="Gypsy-19_PSo-I_3p" FT /translation="MSYFRRYIPGYALISTPLERLKMKDTPFVWNEDCEVA FT FRQLNRALVTPPILSYPDMKKRFNLYVDSSRYAVGACLMQVVDGRDRAVAY FT ASKLLTGSQKNWISNQAGISEIECWGIVWSTRKFRCYLDKREFDLCTDHQA FT LTWIFSPGNRTTNAKLARWAIELSNLQFRVHHKPGTSMGHVDGLSRLPTAS FT VNALTMADLLNPGGSPVGMADLLNPDDSPETVANDSVGEPSDRAVASDSVG FT EPSNVAPEPMTRDGGGEMGTETAVPLPEAATEDESAPTDVPPSSVDLFGLD FT MEQLMVEQRKIPWVMALIAFLTGGALPLDPSLRVKVVRIASKFAVENEVLI FT RRVNLPARVGPARSLTVPVIPLPFVETVLHFCHADLLSSHLGLTKTLEKVR FT RHAYWPVWRQDVEEYLRECDKCGSGKGARPWRAGRMQRMPIVDLTGPFSLL FT VVDAVGPLPETERGNRYILVFVDYFTRWAEAFAVERLDSMTFVEVTVNGVV FT SQHGVPSRLLSDNGSNCTSEVAKSFYQTLGIKNLFGAAYHPQTQGLVERFN FT GTLIGMLVRLKMIGIFIFLECFLPTGRPTTRPWEIRRFSRCTGATQCFRWT FT WPSSILESSDGVMKWLSIGESCTALSVPHDIWLSVSC" FT CDS 10829..11830 FT /product="Gypsy-19_PSo-I_2p" FT /translation="MEWATEVVNGLAAIVVVAAEAACQVAVERRWELAWLT FT AGAVSWTVTGPLRSIGSRIAAVFVDFALKWSVLAKLYVMRYCRYVRGPAVQ FT MQPLRTRVWKCYEALLTTPLVVLESKGEHEDRLGRLLYKWLDALHEWWCVF FT LPETCASGRKACSKYCTGASLESGRSVAKVVWTLTSLIPFSAFYAVLFTYE FT VFEWICQGVAGVFAVVVVFDCWFASEEGEHAIVTNYWLLVVNVWVALVCIT FT SKLWRLYEASAGECSPLTMATEGYAAWCAALEEQEQAERLSEAFWRMDGGG FT NAPRVQVRTRSGLQAERRAWQVRREVDQAACARRGRRDAVGE" XX SQ Sequence 11832 BP; 2352 A; 3118 C; 4117 G; 2245 T; 0 other; cgtggtggag gagcagggta gtgttaccga ctgtggagtg aacagtgctg agagcctgtg 60 cccggaagtg aacagagtca agagccgagc gtctggaact ggtgactgga cgtgtgaccc 120 ccctcctcgt gtttaaagtg tgccagggaa ggacacagga gtccgcacac gagtacacgc 180 cgcgcgggaa aagcggcgtc gaggagcagt gagaggagcg atccaggccg gtaggacaag 240 ggaacggtaa cgtagacaca agagccaagt gtgcacggtc aagagcaaga ggtcaagcga 300 acaaggaaca gtaaactgag agtggacaag gaacggtaaa ctgagaagag aagatgccag 360 gaggacaagg aggaagaggc ggtaacgctg aggaagcagc acgccgccgg gctgaacaag 420 aagaaagagc gcgtgcagag cgcgccgagg cagagcgtac cgcgcgggcc gaagcagagc 480 gtgccgaaag acgtcggcag aggccctcga caccgacttc cgggacgccg atgatcggga 540 tagcgccgcc gctgtcccag cgaccgaggg ccccgccgcc gcccagccag gctggagcgg 600 gcgcgccgga cccggttgaa gagggattga ggagtctgga gcggtggagg aagacccctg 660 agtatgctga agagggagcg tccgtgtcgg atgtgatgcg tgagctccgg gaagatgaag 720 aagacgagga ctatgaagag aaggaggcgg tcaagacgga gaccgcgact ggagtccagc 780 cggtgacctc ggctggaatg aagacggaga ccgtggcgaa ggccaaggcg gagtccgccg 840 tgaagggcga gccggagcca ccggtctcga gtccgatggg acggtcgagt gtggggtagc 900 cctacgctca gccgacggac tatgggtacg gctacgggat gtacgccgac gacgaggaag 960 actaccacga cgcgatggag gagccggtcc cgacgcagcg aggcccgagt gggttcatca 1020 cccgctacac gggtcccgag gcccgccgaa cggatcgccc tgcctttgga tggagctgga 1080 gcgctcaaca tggttcgggg aaggcccccg agtacgaagg atggagtggg agcggaagcg 1140 cggtgaagtc gccgatcaag tcgccccctc cgatgaagaa gttgcagttc gccggcggtc 1200 cggctgggct ctcgaagccg ctcggtggcg gaatgcccat gcaacctaca acgggcctac 1260 ggcaagtcgg acgcctggaa cgggtacggc tccgccggct ccgacggctg caccgtcgac 1320 gagttggcgc ggtgccagtg gactttcgcc gagtgcctac aacctgtcta cgatggtctc 1380 gcacgccgtg aaggtgctgc cgatgttcca ttcagacacg gccacggtgg agaaggcgcg 1440 ggacttctgg gagctcttcg aggaccacac ggacggtttc cccgaccggt ccagattgct 1500 ggtgttccgt cagaagctgc gaggccgcga ggctgaccgg tggtggaaca actcgaggat 1560 caagtcgttc aggatgctca aggtgcggtt ccataaccag ttcctcagcc ggatggctga 1620 cgagctgtgg gagctgctag agaacacgaa gaggcagcgc ggagagtccg tggaggagtg 1680 gggtgaccga gtctcggacc tgtgcgagtc cctcgactac ccgaatccgc agatgcggta 1740 ccagctcttc cgccgaggac tgcggaacaa gcgcatgctg gcgaccttgg acgcgagtcc 1800 cgcgtcggac attccggagg cgtgcgagtg gctcatgttc gaggacatgc accgtccgat 1860 cgaggaggac gacgagttct cggacagcga atccaagaag aagaacaaga agtcggagga 1920 ggcccccgcg acgactgcgg tcgaggccct cgctgagcag atgaagtcgt tcatggagca 1980 gcaacaacag tggcaacagc aacttatgca gcgccagtgg cagccgccta ggtcgcctcg 2040 caatcgagcg ccggtagtgg ccgccacccc tgccactcag cccgctggaa acggtcgtgg 2100 gccagggaac gctcagccat tccggggcat tcggatggga gatgatagtc gcacgcagga 2160 cggttcgcct gtgtgtggtc gctgtaactt catgggacat ggtcgcgcta catgcaagcg 2220 cgcgtcgatg ggctgcaggc gctgtggcgc gtttggtcat atcgcggtcg agtgggacag 2280 gccccagaac ggtggaggcc agactgcagc cgctgggggt actcaagctc cgtctggttg 2340 tgttttctac caagacgcga gccactccgt gatgcagtgc cccgtgttgg ccgagcttcg 2400 tgatgcgact ccgagtttgc tgaacgcggc cgcccagagc aatccgaccc gtcgacagtg 2460 gcgggggcgg gaggaagcag aggagggagc cactcctttc tctagtctag aggatggctc 2520 agggggtgat cgtaggaggc aggcgagacg aaggcgttct gcggtcacgg cgaggaaaac 2580 ggtggacaag gttgtgaaga gtagtgtgaa tgaagggagc gtcgaagagg aacgcgtaga 2640 ggcgccaaga gcggaagtgg aagttgagac ggttgccggg gcccgggaag agtggattgt 2700 acccagcggc gtctccgtcg aagaagaata tgaacgagag caggggcgga cggtattgtc 2760 tgtgcgggaa gaaggtgaag ctgagtgttg gacggagttg tctgtgcacg gcgaaaatga 2820 ggaaagcgtg gcggaagagc ctgcatactg ctacgaggaa aaagcggcgt gggccgttgc 2880 gagtgacgag gaggagaaga tgtaccctgc ggggaagacg gcgaccgagg agagcgccga 2940 gcaggacgag ccgagtgcaa gggtgaacgg ggcgtgggcc catgatgggg ccgccctcga 3000 tggtaacgat gaagaggcta aggaggccga ggcggccaag ctggacgccc ccgcgggcga 3060 tggagacccc gcgagtggcc cagaccgcag ccccgagcgt ggagtaggca acgaagaggg 3120 gacggcagca gagaccgtcg actcggcgta cgacgaggac cggtccgcga ggtcggagga 3180 gtcggcgtac tccgaggagg aggaagtcga cggtgatgtg ttctatgcgg ccagtgcgga 3240 cgatgaagcg ttctgtgctg cgcctccgag cgcgaacata ccctacaagg tacccacgga 3300 ggaggtgccg ccgcctacgg agttgagagc ggtgccgagg tcagtgactg cggccccttt 3360 gcgaagcatt ctgaagaagg aaggcccccg tccgcgttgg atgacggagg agccctcctt 3420 cgaagggtgg ggcggcgctg tagatgtggg ggacacactg ttcgccgagt ggaacgacga 3480 cggaggatcg ccggccggcg agcacatcgc cgagaagaac gtcaacgtag tcgtagggcc 3540 cgagccggtg gcagggcccg ccaccgagtt ggctgtcgcc gaggaggacc gaggcgctgc 3600 cgccgagagc aaggaagtgc ccgagagttc cgaggtggtc gaggcggcca aggacgttaa 3660 ggagccgccc cgccacgctc gtctcttcac ggacgaggag ctggacgaca tggagtgcga 3720 ggcgccgaaa ccctccgttc caggcatcag tgaggagatc gaggagtatg acaaggagct 3780 ggaggacagg ctccaccccc tcgatgaagt ggagttgatg cgcaaggtga aggagaatgc 3840 ggagagggcc aagggcccgt ccatggaaga gatgtcgaag tttctgggcg tcccggttga 3900 ggcgctgacc aagatgaagg acgcctcgcc cgagggcacg tcctcgcccg agtactggga 3960 ggactggtac aggaacacac tggagaactc ggcggaggcc aagcgagcca accgtgactt 4020 caaacagtca ctggtcagct gcgtctctct agaacgctcg accgaggaga caacgtatga 4080 gtcgttcggc ctgtcggagt ccgacctggg ccagaaggcc tcgaccgtct cggtcgatgg 4140 ctccgtgatg gaggacagcg tgactgcgaa cattgcggtc cccgtggatg tctgtgagga 4200 gaacagcgag gagatggtca ctgcggtaag cgtgaacccg cccgtggccg ctcctgaacc 4260 gagttcgagc gcttctccga gcgagaggtc ggaggctcgc aaggccgtgc acttcttgct 4320 gaaggagacc aaggacgaga tgttgcgtgc gaagaagtcg gtcgtcgacc cgctcggaga 4380 aggcgtcacg gtcgagatcc ccccgattcg tgataagcca cctgatctag actgggtgcg 4440 cctcgtgcac gatgttgagc aagttgctgg tgaaaatgaa gaccaaatct actggcgaga 4500 acctgtgaag aaatggacga acgagtacta caatgagaac gctacgtata tttggaataa 4560 gctactagat cgagttcgag aagcccactc ggcgagtgcg aagcgtcggc tgcggcgtcg 4620 ctcgcggcgg cccgtatgct ttgacttcac ggcgttgtac cgcgattcgg ccgaggcgct 4680 ggacggggag ctccgtcctg aagaagacga cgacgcgacg cactacgtgc aagtggtccg 4740 tcccgagcgt ccaccgccgg agcgtggacg gaagaccggg atggtggagg tggtaaccgt 4800 gaacttgccg gacggcttcg gcgtccgtgc cgataaggat gatgatgagt gtggagccga 4860 gctcccacgc gtagttgccg gtggtcggcg tgtggtgtgc actgtgggga acttcgaggc 4920 gctgtcgtgc gggtacatcg actgcctgcc ttcgcagatg ttggcggaca cgggcgcaac 4980 gctcagtctc gtcgacttcc gtgttctgaa gcgtctgggc cgagctggtg aagctctgga 5040 ggcctacgac gggcgggtac gcagttcgtc tggacaccgt ctgcgcattc gggggtggat 5100 cactctcccc ctaatgctgg gcaaggtcgg gatgaccatg cggatgctcg tggccgacaa 5160 gttgcatgtg gacactatct tgggcgtcga cgcgctgggc gcgttcggag cagtgattga 5220 cgtggccgag cggacgctca tgctgaagag cacgggcgaa gtcttatcgt tgggcgtgat 5280 ggtggtccac gaatcgttca tggccacgat ggccgtgtcc gtccgcttgc cgccaagggt 5340 ccaggccctg gtggtcacgg atgtggtggg cgatgccccg aacgcgaccg tcctcgtcga 5400 gggctctctc aacttgccgc cttcgctttg cgtggcgata acgctctgta ctgtggacga 5460 cggtcgagtc gtcgtggagg tttgcaacgc atcgacaaaa gagttctgga tcaagaaggg 5520 cacggtggtg gcctcgacga ttatcgcaag ttgaacgccg taacggtcaa agattgctat 5580 cctatgccgc tgattgacga catcctggac gtgctgagtg gagccaaact gttctcgacc 5640 atggacatcg cctcaggcta ctggaacgtg cccatgcatg aagacagtat tgctaaaacg 5700 gctttcacat gcaaatacgg tctattcgaa tggttagtca tgccctttgg cctatgcaat 5760 gctgtacctg ctagcgaacg gttgatggag accgtgcttg tcgacctcaa gtggcacgtg 5820 tgcttggtgt acttggacga ctgcgtcatc ttcagcgagg acttcccgtc gcacctcgtt 5880 cgccttcggc aagtgctgac ccgctttcaa caggccggct tcaaactgaa gatgaagaaa 5940 tgtcactggg gcaggagtca ggtcgccttt ctcgggcaca ttgtgacacc catgggcatc 6000 ctcccgaacc ccgagaaggt gaatgccgtc atgaacgtgc agaggccgcg cgctgtgcat 6060 gatatccgtt cattttgggg ctgatgagct acttccgccg gtatatcccg gggtacgctc 6120 tgatctctac gccgctggaa cgcctgaaaa tgaaagacac tccgttcgtc tggaatgagg 6180 actgtgaggt ggcgttccgc cagctgaata gggcgctagt cactcctcct atcctatcct 6240 acccggacat gaagaaacga ttcaatcttt acgtcgactc gtcgaggtat gctgtcggtg 6300 cttgtctaat gcaggtggtg gacggtcgag accgtgctgt cgcctatgct agcaagttac 6360 tgacaggctc tcagaagaac tggatcagca accaagccgg aatctctgaa attgaatgct 6420 ggggaattgt ctggtctacg cggaagttcc gctgctacct agataagcga gagtttgatc 6480 tctgcactga ccatcaggcg cttacctgga tcttcagtcc tggcaaccgc acgaccaatg 6540 ctaagctcgc tcgctgggcg atcgagctgt ccaatctaca attccgagtg catcacaagc 6600 ccgggacgag catggggcac gtggacggct tgtcgcgcct ccctaccgcg agtgtgaacg 6660 cgctgaccat ggcggacctg ctgaacccgg ggggctcgcc tgtgggcatg gccgacttgc 6720 tgaatccgga cgattcgccc gagaccgtgg ccaacgactc agtcggggag ccgtccgatc 6780 gagccgtggc ttccgactca gtcggggagc cgtccaacgt ggcgcccgaa ccgatgacta 6840 gagacggcgg cggcgagatg ggcacggaga ccgcggttcc gttgccggaa gccgctactg 6900 aggacgagtc cgcgccgacg gacgtccctc cgtcgtccgt ggacttgttc ggactcgata 6960 tggagcagtt gatggtggag cagcggaaga tcccgtgggt gatggccctg atcgcgttcc 7020 tgacgggtgg agcgctgccg ctggacccta gcttacgagt gaaggttgtg aggatcgcgt 7080 ccaagttcgc cgtcgagaac gaggtgttga tacgcagagt gaatctcccc gcgcgcgtgg 7140 ggcccgctcg atcgcttacc gtgcccgtga taccgcttcc gttcgttgaa acagtcttac 7200 atttttgtca cgctgatcta ctgtcgtcgc atctcggcct cacgaagacg ctcgagaagg 7260 tgaggcgaca cgcgtactgg ccagtgtggc gacaggacgt cgaggagtat ttgcgcgaat 7320 gtgataagtg cggaagtggc aagggtgcgc gtccgtggcg cgctggtcga atgcagagaa 7380 tgcccatcgt ggatctgacg gggccgttct cgttgctcgt ggtggacgcc gtggggcctc 7440 tgcccgaaac cgagcgtggc aatcgctata ttttagtttt cgttgattac ttcactcgct 7500 gggccgaggc gttcgccgtg gagcgcttgg actccatgac gttcgtggag gtgacggtga 7560 acggagtggt gtctcagcac ggagtgccgt cgcggttgct gagcgacaac ggctcgaact 7620 gcacgtctga ggtggccaag tccttctatc agacgttggg cattaagaat ctctttggtg 7680 ctgcctacca ccctcagact caaggactcg tcgagagatt caacggaacg ctcataggaa 7740 tgctagtgag gctcaagatg attgggatat ttatcttcct agagtgtttt ttgcctacag 7800 gacggcctac cacgaggccc tgggagattc gccgtttttc gcgctgtacg ggcgcgaccc 7860 agtgcttccg atggacgtgg ccttcctcaa tcttggaaag cagtgacgga gtaatgaagt 7920 ggctcagtat aggcgagagc tgtacagctc tctccgttcc tcacgacatt tggttgagcg 7980 tcagttgttg aaggcgcaag atcggcacga gcagcgcctg gaagggcaag tcgaattgaa 8040 ttatgaaata ggagacccgg tgtgggtcta ccaggtgttc agggcgaaac gcggcgaagt 8100 gcgcacgaag aagcttgcct tcgcttggca cggtccctat cggatcgtag ccaaggtcgg 8160 cgagaacgct tatcgggtcg acatcccgac tcaccctaac aaaatggtga ccgtgaacgt 8220 gaataggctc aaaaggtatc gtggcaaatg gacccggcct tatatggatg aagtgcccga 8280 gggtctgggc actagtgatg aaaacgaaga agaggggccg ttggaagagg ccgacctccc 8340 tgtgtcgagc tacgcggaac ggttgacact aggaaatgag gacactgtta ttgtgggcgt 8400 ggaagccccc atcgtggaaa tagtggcgaa gatgaaggac ggtcagggcg tgaagtacct 8460 gacgatgacc agctcgtatg aggtgttctg gctgcccagg gagactttga tgcccgagta 8520 tgcgtcgttg gtgaccgctt ttgagcaagc ggataggagg aagaaggggt tgccggagct 8580 tcgtcgaagt gcgcgtttgg cggacgctaa cgcccaagtc gatgatgact atttgctgct 8640 ggcgtagttg gtgatgttct tgagctgaag aacctgtgat tgtggatatg gatttacgag 8700 cagctcacga atggtggata tgcatgtcaa gttcatgttt ttatttggtt ttacctgcaa 8760 aattagtgct gcggctgcac tagactcgac tacaacgaaa tgaagaagat aaacggagat 8820 ccgaggtgtg cgcatgactc acttggcctt gtcgacgctt gcgggacgcg acttgagctt 8880 cttcgtcgga ggctcgctcg ctacctcgcc gtcgtcgtct gcttcgtcgc ccggcagcgt 8940 ctctttggcc gcgacggggg ccttggtggt cttgggttgg accttgtcgt ccttgtcgct 9000 gtcgtcctag gccgccggct tcttcttgtc gtcgctggag tcttcggact cgcctgactt 9060 gctggagcga gaaaccggaa ctcctggctt ggacggagtg gtagctcgct gtttgacggc 9120 gggagcccgg tactgcacgg ggggcgtcgg aggcaacgcc gtgaaggctc cgtcctcgtc 9180 ctcgaagtcc gagtcatcgt cgccctgctc gtcggggttg aagggcttct ggtcgtacac 9240 ggccaccttc atgcccaagt ccaggagctc gaccacctcc tcgatggtgt ctttgagcga 9300 cgcgtccgac aagagggcct tccacgggcc gcgggttcgg ttgaccaccc aagaaggcac 9360 ggggggtggc ccgctggtga cgtcgagctt gatgcgagcg agggccttgt cggagagtcg 9420 caggtgtagc gctcgcgtgg ggtcgatgag ctccgcctcc tcgaggagct ccggaatcga 9480 ggcgtagccg tgttcgtcga cgatcttggg gtcgagagct cgctcgatgg cccgctcgta 9540 gagaatcttg tcctttccga agacaacgcc gaggtcctcg tgcgccgcgc ccttgctctt 9600 agccgcgccg gcagagtgct tggccgctct gcctcccaac cacatgagcg tgtcatgagc 9660 accgttctcg aagtcgtcga gaaagccgaa gtaccatcgc tcctcgatgt tgtagctaat 9720 gagctcgttc cgcgctcggc acgcattcat tttctccttg cgccgctggt cggcattcag 9780 acaaggcgcg tacagcgccc acaggaaaaa cagctcgcgg aagcgcatgt tggcacggta 9840 gtggacgagg tgcaacttgg gatactcgga tggcggctac cagcaccgct gtttgcgcca 9900 ggggtacgcc aagcggaacg gagcgaggcc cttgctgaag gggcgctgcg caagtgcggc 9960 caggtcgatc ttcagtcgcg cgggcgccgt cgtcggcaac cggaagtcgt aggcctcggc 10020 cttcttcttg gccgcggcct tctgtttctt cttcgatggc ggtctcgtct tggaagacgt 10080 ccgtggcgac gatctggttc ctgtcgatgg acgcggcggc ggtgacgtcg actctggcgt 10140 gggcaccaac ggcggcagcg ggatcgacag gacggagtgc tcggcaggct cgccggcctg 10200 catctggtcg gggtgcggca ggatcacgag gatcttgttc aggcggcgtg cgtcgccacc 10260 ctacaggacg tccatggcca tggcgtccag gacgtctagc ccctgggacg cattgttgac 10320 ggagagacgg gtccggaggc gcgcccaaaa ctcgcgctgc gcgatgaaga cgtccccctc 10380 gtcgtcgagc tcgagggcca tgtccaggct gcccacctgg ttgtcgaagt cggtgacgtc 10440 ggagttggtc ttcttaacca tgacggacgc gaggcgaggg agagagcgga gagatgcttg 10500 gtgactgcgg agtgcgcggc ccggcgaaaa ttgcggattg aggcaacttt cagtggggcg 10560 gctacggcaa cttctgctta ccacgtgact tcaagtgaat tgacgaaatg tgactcacct 10620 tgtggatgac tgcgaccgtc tgagagaggc gcccaactgg ctggtcactt tcgaagaacc 10680 cgcgagcgac gctggcagta acggggcctt ggctgccctg cgcctctgca ggttgatggt 10740 gaccgccaag ggctgccgct agtggcgcgc gcggacggct cggacggcgt caaagtggcc 10800 gtcattatga attagtgctg ctggaacgat ggagtgggcg acggaggtgg tgaacggcct 10860 ggcggcaata gtggtggtcg ctgctgaggc agcttgtcaa gttgcagtgg agcgtcgctg 10920 ggagctggcg tggctcactg ctggagcagt gtcgtggacg gttacgggcc ccctgcgaag 10980 catcggctca cggatcgccg ctgtgttcgt cgacttcgcc ctgaagtgga gcgtgctggc 11040 caagttatac gtcatgcgct actgcaggta tgtccgtggg cctgccgtgc aaatgcagcc 11100 gctccgaact cgcgtgtgga agtgttacga ggccctgctg accaccccgt tggttgtgct 11160 ggagtccaag ggcgagcatg aagacaggct ggggaggttg ctctacaagt ggcttgacgc 11220 cctccacgag tggtggtgcg tcttcttacc tgagacttgc gcgtcgggac ggaaggcgtg 11280 ttccaagtac tgcacgggcg cgagtctgga gtctggccgt tcggtcgcca aggtggtatg 11340 gacgctgacg tccctgatcc cgttctcggc gttctacgcc gtgctgttca cctacgaagt 11400 cttcgagtgg atctgccagg gcgtggccgg cgtgttcgct gtagtcgtgg tctttgattg 11460 ctggttcgct tccgaggagg gcgagcatgc aatagtgact aactactggt tgctggtggt 11520 gaatgtttgg gttgcgctgg tatgcataac cagtaagttg tggaggttgt acgaggcgtc 11580 ggcgggcgag tgttcgccgc tgactatggc cacggagggc tacgctgcgt ggtgcgcggc 11640 tctcgaggag caggagcagg ctgagcgtct aagtgaggca ttttggagga tggacggcgg 11700 gggaaatgcg ccgagagtgc aggtgcggac gcgaagtgga ttgcaggccg aacggagggc 11760 ctggcaagta aggagagaag tggatcaagc tgcgtgcgct cggcgaggac gccgagatgc 11820 agtcggggag ga 11832 // ID OCCAN_MG repbase; DNA; PLN; 2688 BP. XX AC AB074754; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Magnaporthe grisea DNA transposon OCCAN_MG. XX KW DNA transposon; Transposable Element; OCCAN_MG; transposase. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-2688 RA Kito H., Takahashi Y., Sato J., Sone T. and Tomita F.; RT "Direct submission."; RL Direct Submission to Genbank (22-NOV-2001). XX DR Genbank; AB074754; Positions 1 2688. XX CC 76bp terminal inverted repeats. XX SQ Sequence 2688 BP; 710 A; 701 C; 649 G; 627 T; 1 other; tacttggggg ctgttcgttg tgggccccct caaagagggg gttacaaaac cttgattttc 60 gaaaaaaccg tgggccaccc cgcatcagtt ttttacctag aaaatcgtta acaatttaac 120 ttatgccgag tgtaatcccg ttccataaca acacaattgc acttaccgca aatataccta 180 tatcatgacg tccccagaat ctccagctat cttaggagcc cgcatgtatg cccaatatgt 240 cgaaactcac cgcagtaggg cggataccgc gcgggagggc agatccaagc cagaatcgct 300 acgatcgttc tgtaaaagga acggttaccc gtattcgagt actcagcggc atgctcgtaa 360 tctcctgatc aatggcattc ctaagatatc gatagagcgc agcgggcggc cttcattgtt 420 gactgatgct gaagatcaag ctctcgttgc gtatatcatg cagcttgata aacttggtgc 480 atatcccgac tcacaacacg taatatctgc ggccaatctg atgcgtcagt cacgtatacc 540 gccctgtggt ccagttcaaa tgaactggta cggccgttgg cgtaaaaaac acccggaact 600 gcgacttacc aagcaacaac ccgtcgagat tactcgcctt agttgggagc aacagatcga 660 tcttgtggag gcctggtatc gccgcacggc ggctcatgcg gtagagcttg ggatcacggc 720 ttcagcggcc tggaacgctg acgaatgcgg tactagaatc ggtgtgagag atggccggat 780 accggtattg gtcgtgacga aaaagaggca tgaaaagcca cgcaccgcgg atccggctaa 840 ccgtgagagt tgtacgttga taggcggtgg caacgctgtt gggcagtcgc taccgccctt 900 ctgtatcttc acaaaatggc caacgagcga ttggcttgat ctggatctgc ctgagggtat 960 cgtttttacg cggtcagaaa cggggttttc caacggagat atccagctca cctggataca 1020 gcatttcaac cggtattcgt ggccagaagt tgctgccgtg caatcgatcg gatctcccac 1080 gttgaaagag tggtttggtc atgactttga cgtcagattc gactttgtga accgcactgc 1140 ggccaaaatc gatccaaatt cacagcgggc caaaacacgt atttggaggt ggctttttct 1200 cgacggcttt accggccact ttggcatgga gatacttgac tattgcctca aatttgatct 1260 tgagatcgtt attttaccgc ctcattcaac gcattatatg cagcccatgg acgtatccgt 1320 gttcactcac ctgaaaaacg agttgcaggc ggtcctgcat gagcatataa acaccggtat 1380 tccggtgttc acccgctcaa atttcgttgc tgcgattcga gcaagtcgtt ttcgatctac 1440 aggttaattt agcggtaaac tgatatatct tcccttaact tagcgctgct ggcaaacggc 1500 cttcacaact ggccacgtaa taagcggttt ccaagataca ggcttatttc ctgtcgacgg 1560 caccaaagtg ctcgccaaac tgcgtggcca cgccacggca gcgaatacac cgcgatatcc 1620 ggactccctt cctaccgctg aacgattttc acgggccaaa tatgcggcaa gccgtatggc 1680 ggccaaggcg caccacttta gttcagatac cgttgatgct atctcggatt tacaagccgt 1740 tgccaacgag gcgatcatcc tacagcaacg cgttgcccaa gagcagacga ataagcaaaa 1800 acgccttcaa cgcgcttcac gttacaaagt taaaatgacg ttgaagtcaa aagacaagca 1860 gttccagacc gctaatacgt tagaagatat gcgggtcgct cacgaagcca aacaggcgtt 1920 gatcgaggaa acagccctat accaacaaga aaagttcgtc aaagatgcgt ggtataggga 1980 taagaatcag gctattcaac gctggcgaga aacagagggc atgcccaacg ggattaagat 2040 acaacagaag agatatctgg aggacctcag cttcacgccg gagaacgttc cggcggtcag 2100 ggaacgccct ggaaaaagga agaagaccga ttcacagccc tcacagtcat ggttcgtcga 2160 taaagggcca atttcagctg gaaatacaag tacccagatc aatattaccg tggataccga 2220 ctctgcctgt tctatcagca tatgcgtatc acgatcctcg caatcagcct cacctcccgc 2280 cccaaacagg ccttccaaac cgttcccacg gtatatacca ttggctacac cctctccccg 2340 tcaacttcag gatacgagac cgcttkaaga ccgttcctcg ccgccaatac cgggtggtag 2400 aaaggatgag ttggaagtac ccgggtcgcc ttgtaaccgc ttgagcgacc ggaaaagggc 2460 gattgagcca aaactccaga aatagatatc tacagcgcaa ttcacggctt caatttatct 2520 gcaaattcta acctttttcg tgggtgtagt gtttacgaac gtgaatcgaa ctttcatgag 2580 ctactttgtt agcgatctgc taacaaattt gctggcccac ggttttttcg aaaatcaagg 2640 ttttgtaacc ccctctttga gggggccaca acgaacagcc cccaagta 2688 // ID PILN3_PT repbase; DNA; PLN; 413 BP. XX AC AB016147; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus thunbergii LINE retrotransposon PILN3_PT, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; LINE; PILN3_PT; KW endonuclease; long interspersed nuclear element. XX OS Pinus thunbergii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-413 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016147; Positions 1 413. XX SQ Sequence 413 BP; 161 A; 63 C; 88 G; 101 T; 0 other; ttggaatgcg agaggtctca atagccgaga aaatcgatat acttacaaga caaattgaag 60 aaggagaagc cacagattgt gattctctag gaaaccaagg tatcaaggga gaaaatggag 120 gatattctta taaaaattaa acccaaataa aaattagtac aaatagatgg aaaaggaagt 180 gtaggaataa tttcaatact ctgaaatcct gcgaaggtaa tggtagatta ttggatggta 240 attccacgca cttttacatg ttgatttcac aacactagaa caagagaatg gattcttatc 300 tcaacggtat atggccctca cacttcagga gagaaggaaa gcttccttca gagtataagg 360 aaaatgagtc aaatgcatac aaaaaaagta tggctcatcc tcggggactt taa 413 // ID Copia-4_SMo-I repbase; DNA; PLN; 2341 BP. XX AC ADFJ01003091; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_SMo_; KW Copia-4_SMo-LTR; Copia-4_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-2341 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01003091; Positions 82077 79737. XX CC 'TGCTG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 52..2304 FT /product="Copia-4_SMo-I_1p" FT /translation="MAASTPPPPPPPPPPPPPPPPPPPVAAQVLVASTEKV FT EKFNGTNFFTWATRIRLILSAKRAWNIVDGTEPRPAEQTLQSDWDFRNQQA FT ITVIGLGLSDEFLPLIDLTKTAAEIWTSLRTIFVAQAANSSMLLNQQFLAL FT HMETGETIAVYVGRIRGLMAELTGAGSPVTDDRARALLLATVTPAFSTLAS FT VLSHMAMNFDQVVGALIEEERKMKGKKEAMPSAKSSLLYAGAAGGSSSSSQ FT AQPNDTGFRGICHYCHKPGQLARDCKKKKADRAKAAKNKDKGNKDKGSGTP FT RKLLMARSASSSHQPVLGPELWLDSGASFHMTPMASLFFDYQEPCESDAVG FT LGDSSAHDVLGKGTIRVQLSSGEIREIYPVSYVPGLTHTLLSIGTAAQVGF FT DTLFTAQGAFVLDAETGDKVAFGVPVDTLYRLDAHVILPPVALMARVPPTL FT ATWHQRLGHVNEQQLKKVDVPVAPGSTLPFCEACVGGKHHVFPFPQISHSR FT ASSVLELVHSDVCSIMVESLGGKRYVVTFLDDYTRYLIVYLLAHKSEVFSC FT FSQYKNPGPGHWQAVKRIFRYVRGTLHLQLHYGAAVSQELHGYSDADWAGD FT QDSRRSTSGYTFLLHGAAVSWSSKRQPLVALSSTEAEYIALTAASKEAIWL FT TQFCRDLPQIPACTGPMVLFSDNQSALALAANPRFHSRTKHIEIRFHYVRE FT QVQNGKLLLEYCPTEAMVADILTKALARDSFERHRAALGVCSPSVSAEWEG FT " XX SQ Sequence 2341 BP; 497 A; 635 C; 635 G; 574 T; 0 other; tggtatcgga tttcggggac gatcctggtt ggttgatttg acgttgctgt catggccgct 60 tcaaccccac cacctccgcc gcccccacca ccaccgccgc cgccgccgcc gccgccgcca 120 ccggttgctg ctcaagttct cgtggcttcc acagagaagg tggagaaatt caatggcacg 180 aatttcttca catgggcgac aagaatcagg ctgatcctct ctgcgaaacg agcgtggaac 240 atcgttgatg ggactgagcc tcgtcccgct gagcagacgc tacaatcaga ttgggatttt 300 cgcaatcagc aagccatcac cgtcattggc ttgggattga gcgatgaatt cttgccgctg 360 attgatctca ccaagaccgc tgctgaaatc tggacgtcgc ttcgcacgat cttcgtggcc 420 caagccgcaa attcttccat gttgctgaat caacaattct tggcgcttca catggaaacg 480 ggtgaaacca ttgctgtgta cgtgggacgg attcgagggc taatggctga attgactggt 540 gctgggtctc ctgtcacgga cgatcgcgcc agggcgttgc tgcttgcaac cgtcacgcct 600 gcgtttagca cgctcgcatc tgttctatct cacatggcca tgaactttga tcaagtcgtg 660 ggtgccctaa ttgaagagga acgcaagatg aaggggaaga aagaagcgat gccctctgcc 720 aaatcttcct tgctttatgc tggcgctgcg ggaggatcat cctcgtcctc tcaagctcag 780 ccgaacgaca ctggttttcg tggcatttgt cactattgcc acaaacctgg acaattggcg 840 agggattgca agaagaagaa agctgatcgt gctaaagctg ccaagaacaa agacaaagga 900 aacaaagaca agggctctgg gactcctcgt aagctcttga tggctcgctc tgcaagcagc 960 agccaccagc ccgtgctcgg accagagctg tggctggatt ctggagcgtc attccatatg 1020 acgcccatgg cttccttgtt ttttgactac caagaaccgt gtgagagtga cgccgtggga 1080 ctcggtgact cctctgctca cgacgtacta ggcaaaggaa caatcagggt tcagctctct 1140 tctggagaaa tccgggagat ctatcctgtg tcttatgttc cgggacttac acacacgctg 1200 ctgtcgattg gaactgctgc tcaagtaggc ttcgatactc tgttcacagc acagggagcg 1260 ttcgtgctgg atgccgagac tggagataag gtcgcttttg gagttccagt tgatacgctc 1320 taccgcctgg atgctcacgt gatccttcca cctgtggcac tgatggctcg ggttccaccg 1380 acacttgcaa cctggcacca gcgccttggt cacgtgaacg agcaacagct aaaaaaggtg 1440 gatgttcctg tggcgcctgg gagcacgctg cccttctgcg aagcttgtgt tggtggaaaa 1500 caccacgttt ttccttttcc acagatttct cattctcgag caagttctgt tcttgagttg 1560 gtacactcgg acgtttgttc gattatggtt gaatctttgg gaggcaaacg ttacgtagtc 1620 accttcctgg atgattacac gcggtacctg atcgtgtacc tgctggctca taagtcagaa 1680 gtgttctcct gttttagcca atacaagaac cccggacctg gacattggca agctgtgaag 1740 cggattttcc gctacgttcg aggtaccttg catttgcagc ttcactatgg cgctgctgtg 1800 tcacaggaac ttcatgggta ctcggatgcg gactgggcgg gcgaccagga ctcaaggcgc 1860 tctacctccg ggtatacgtt cttgctccat ggggctgctg tgtcctggag cagtaagcgc 1920 cagccgctgg tggctctatc ctcgacggag gcagagtaca ttgccctaac cgctgccagc 1980 aaagaagcga tttggttgac ccagttctgc cgtgacctgc cccagattcc tgcttgcacc 2040 ggacctatgg tgctgttctc ggacaaccaa agtgctcttg cactggccgc caatccgcgc 2100 ttccattctc ggacgaaaca catcgagatt cgtttccact acgtgcggga acaagtccaa 2160 aatggaaagt tgttgctgga atattgcccc accgaggcaa tggtggctga tatactcacg 2220 aaggctttgg ctcgagactc ctttgaacgc catcgcgctg cactgggagt ctgctctcca 2280 tctgtttcgg ctgagtggga ggggtagtcc atcctctcag ctgatcgagc cagagtggga 2340 g 2341 // ID Gypsy4-LTR_VC repbase; DNA; PLN; 450 BP. XX AC scaffold_31; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4-VC; KW Gypsy4-I_VC; Gypsy4-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-450 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 132-132 (2008). XX DR Genome; scaffold_31; Positions 1451181 1450732. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 450 BP; 101 A; 119 C; 106 G; 124 T; 0 other; tgtagcagtc tacatttccc ttagagtatt ttaacgatta cttttaacaa taactgttaa 60 tttgttaaac gatctgactc aagtttcgta catgttccga gtttcgtcac atgtcgcgaa 120 ctgggcagtt gttcgtaagc gaatctaacg ggctggggcc ccgggcccca ccaacattat 180 cctagtacgg caaggtccgt agtagagatt atccggcagg taggccgaga tataagctac 240 ccgggcgggg tgttctggcc agacactgac gtatcacatt actaggtgtt cggagttcaa 300 gactccgctg ccgccgtctc taaccgttac gtacacatct tatgtacgct agtgcctgcc 360 gcttggttgg acttcttcct acatcgacga ggactaataa ctccacgctt ccgctttgcc 420 agtcctcccg tcaggtgagc gactgctaca 450 // ID Gypsy-3_SMo-I repbase; DNA; PLN; 4814 BP. XX AC ADFJ01002772; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SMo_; KW Gypsy-3_SMo-LTR; Gypsy-3_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4814 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01002772; Positions 124136 119323. XX CC Positions [3454-3951] - Integrase core CC 'TACGC' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 31..4563 FT /product="Gypsy-3_SMo-I_1p" FT /translation="MAGEQDIDPDEEYGVSEDSHDDAEETLDDVVVRQGRQ FT ISAVQSDIKEVKDSVNLIKDFLLRMNPQGLNQSHVRDYHWYVKHVKDYGIV FT EWKSSPDVCDSQEVDSWLELWESCWSHNPCEDKVKIDFFVTKLTGHASSWW FT KNYIKANPMPTSWTDLIKVFHASFVKKFEEVDLVNQLLEIRQGTLSLDAYA FT RKFRDLCLSLTGTYNELLKVQCFIKGLSSVDVQQKVKKDFPATLTDAITKA FT QIFSPKPSVNSVNAGQTDGLRGGQRDDQPTNTSFSGKKRPLLRRSLKSGDD FT NEAKRHRLDQREKDKVEGNCFRCHKAGHHGKDCPLVKGSKNAKVNAVESIV FT DTVQASAVVALPHPVAKVQESKSRVRINSIEINGSMRNQLVKAKGDIQGHA FT VSILFDPGATHNFLSSKVVTKLGLPVEKSSVIYKVVMADGHSTRVYGEWAP FT SVPLTVQGILDHPLFQVMDLGRTDVILGKEWFYDRKPGIDWERNVLRIEVG FT GTIKEIVGTDNSDTPLINALELVTCMHEIANSFVVYPFLSNMIMSDLEYVR FT RHEAQVDSIQEEFRDVFPDELPDGLPPERGIQHEIDLVPGATPFQRQPTRT FT SPAEDEEINRQLAEYLRKGWLRISKSPWAAPVVMVKKKDGTWCLCVNYKGL FT NDRTVKNMFPIPRIDDLLDRLRGARYFSKIDLRQGYHQICVQPEDVPKTAF FT RTRTGHYEFLVMPFGLTNAPATFQRLMNHVLQPYLGKFAIDYFDDILVFSS FT SMEEHEMHVRSVLQLLRDNKLYSKLSKCEFFLEEIGYLGHLILVHGVRADP FT AKIQAVVDWPIPSTVHDLRSFLGMARVFRRFVKDFSGIAAPLTDLLQNTSK FT HATIHGWDEKCEVAFQRLKQCCVSAPVLKIFDPEKPLVVETDASDIAIGAI FT LLQVGHPLAYMSHKFDATQRNWSTRDKELYAVIAAVKEWRHYLYGSDFHVD FT SDHQSLQYFSRQKDLRGHLARWQEFLQEMSVKIRYKHGGDNKVADALSRMV FT NSISFVKLSSDLLDELKEFADFDSFITDIRAKVLLRDASTDLKGDKFASFE FT IRNGILVKKGRVVVPRVDKLIKRILVECHDVPSAGHPGVLRTYMLVKRHFF FT WPGMKSDVEKYVRGCLTCQAVKVDHQKLAGLYHPLRVPENKWDSISMDFIT FT SLPKTFRGNDAIWVVVDRLTKMAHFFPVKTTIKASELAQLFVDRLFSLYGL FT PGDIVSDRDPKFTSKFWQTVFEKLETKLSMSSGEHPQSDGQTERMNQLLED FT MLRSFVGNLTRQGVWEKYLPLLQFAHNSAHQSAIGMSPFMAMYGYEPRSPV FT SLNLALVRVPHACDFLEDMQDKLELAKLNMRQAQERDKRLADEHRRHQEYK FT VGDKVFLKLSDAQRSLKGGGSAKLSPRYCGPWTILQRVGDLAYTLDLPVSS FT KIHPTFHVSKLKACLHSGDIVDQSIIQVPEIDAEKAGPANILAQRLVKTRR FT KTTRELLVQWNGYSMDEATWETEDDVKRVFPSFGYDLDDIPEEEEN" XX SQ Sequence 4814 BP; 1199 A; 886 C; 1287 G; 1442 T; 0 other; ttggtattgg agcagcacgt tcttttgggg atggcgggag agcaagatat tgatcctgat 60 gaggagtatg gcgttagtga ggatagccat gacgatgcag aagagactct tgatgatgtt 120 gttgtgcggc aaggacgcca gatttctgca gttcaaagcg acataaagga ggttaaggat 180 tccgtcaatc tcatcaagga tttcttgctt cgcatgaacc ctcaagggtt gaatcaatct 240 catgtccgtg attaccattg gtacgtcaag catgtcaagg attatggtat cgtggaatgg 300 aaatcatcac cggatgtttg tgatagtcaa gaggttgatt cttggttgga attgtgggaa 360 agttgttggt ctcacaatcc ttgtgaggat aaggtgaaga tagatttctt tgtgacgaag 420 cttacgggcc atgcttcttc gtggtggaag aactacatca aagctaatcc gatgccgact 480 tcttggactg atttgataaa ggttttccac gcttcgtttg tcaagaagtt tgaagaggtt 540 gatctcgtga atcagttgtt agagatccgg caggggactt tgtctttgga tgcgtatgcc 600 cgcaagttcc gtgatctttg ccttagtctc acgggcacct ataatgagct gctaaaggtg 660 caatgtttta tcaaaggatt gagctcagtg gatgtgcagc agaaggtcaa gaaggatttt 720 ccagcaacat tgactgatgc tatcactaag gctcaaatct tttcgcccaa accgtcggtc 780 aattcggtca acgctggtca aacggatggt ctccggggtg gtcaacgtga tgaccaaccc 840 accaatactt cattttcagg gaagaaacgg ccattgcttc gtcgtagctt gaagagtgga 900 gatgacaatg aggcaaaaag acatcggtta gaccaacgag agaaggacaa ggtggagggc 960 aattgttttc gttgtcataa ggctggacat catggcaagg attgtcctct tgtgaaggga 1020 tcaaagaatg ctaaggtgaa tgcggtggaa tccatcgtgg atacagttca ggcatctgct 1080 gtggtggctc ttccacaccc tgtggcaaaa gttcaagaat ctaagtctcg agttcgtatc 1140 aactctatag agattaatgg ttctatgcgc aatcaacttg tgaaggccaa gggggacatt 1200 caaggacatg ctgttagtat tcttttcgat ccaggtgcta cacacaattt tttgagctct 1260 aaggtggtga caaaacttgg tttgcctgtg gaaaagagtt cagtaatcta caaggtggtt 1320 atggcagatg gacatagcac tcgtgtttac ggtgaatggg ctccgagtgt tcctttgacg 1380 gttcaaggga ttctcgacca tcctttgttt caggttatgg atcttggtcg cacagacgtt 1440 attcttggga aggaatggtt ttatgacagg aagccaggga tcgattggga gcgtaatgtt 1500 ctgcgtatcg aagttggtgg cactatcaaa gagattgtcg ggacagacaa tagtgatact 1560 ccattgatta acgctttgga gttggttaca tgcatgcatg agatagctaa ttcttttgtg 1620 gtgtacccgt ttctttctaa tatgatcatg tctgatttgg agtacgttcg taggcatgag 1680 gcacaggtgg attccattca ggaggagttc cgtgacgtat ttccggatga gttacctgat 1740 ggtttgcctc cagaacgtgg aattcagcat gaaattgact tggttccggg agctactcct 1800 tttcagcgac aaccgactcg tactagtccc gctgaagatg aggagattaa taggcagctt 1860 gctgaatacc ttcggaaagg gtggttacgg atcagtaagt ctccttgggc tgctccagtg 1920 gtgatggtca aaaagaaaga tggtacatgg tgtctctgtg tgaactacaa gggattaaat 1980 gataggacag tgaagaatat gttcccgatc cctcgtatcg atgatttgct tgatcgtctt 2040 cgtggagctc gatatttttc gaagattgat ttgaggcaag gatatcatca gatttgtgtc 2100 cagccagagg atgttccgaa aactgcattt cggacaagga caggtcacta cgagttttta 2160 gtgatgccgt ttggtttgac aaatgctcct gcaacttttc agagattgat gaatcacgtt 2220 ctacaacctt acttgggaaa gtttgcaatt gattattttg atgatatcct ggtattcagc 2280 tcttccatgg aggaacatga gatgcatgtg cgaagtgttt tacaactttt gagggacaac 2340 aagctctact cgaagttatc caagtgcgag ttttttttag aggagattgg atatctcggg 2400 catttgattt tggtacatgg agtgagagct gatcccgcaa agattcaggc cgtggttgat 2460 tggcctatac cttccacagt gcatgatctc cgtagtttcc ttggtatggc tagagttttt 2520 cgacgatttg tgaaggactt ttcagggata gcagcccctt taactgatct tctccagaat 2580 acgtcgaaac atgctactat tcatggttgg gatgagaagt gtgaagtggc atttcaacgt 2640 ttgaagcagt gttgtgtctc tgctccggtg ttgaagattt ttgatcctga aaagcctctt 2700 gttgttgaga cagatgcaag tgacattgct attggagcca ttttgcttca agttgggcat 2760 cctcttgcgt acatgagcca taagtttgat gccacacagc ggaattggtc tactcgagac 2820 aaggagttat atgctgtgat tgctgctgtg aaggaatggc gacattatct atatggatcg 2880 gacttccatg tggattcaga ccatcaatct ctccaatatt tcagtcgaca aaaggatctt 2940 cgaggccatc ttgctcgttg gcaagagttc ctgcaggaaa tgtctgttaa gatccggtac 3000 aagcatggag gtgataataa ggtggctgat gcattatcca ggatggtaaa ttctatctcg 3060 tttgtgaagc tatccagcga tctcttggat gagcttaagg agtttgctga cttcgactcc 3120 ttcatcactg atattcgtgc gaaggttttg ttgagggacg cctctacaga tttaaagggt 3180 gacaagtttg cgtcattcga aatacgaaat ggaatcctgg tgaagaaggg acgtgttgtg 3240 gttcctcgtg ttgacaaact catcaaacgg attttggttg agtgtcatga tgttccaagt 3300 gctgggcatc cgggggtatt gagaacgtat atgttggtga agaggcattt cttttggcct 3360 gggatgaagt cagatgttga gaagtacgta cgtggttgtt tgacctgcca ggcggtcaaa 3420 gttgatcatc agaagctcgc tggcctctat catcctttac gtgtacccga gaataagtgg 3480 gatagcatct cgatggactt tatcactagt ttgcccaaaa cctttcgagg aaatgatgct 3540 atttgggttg ttgtggatcg tttgacgaag atggctcact tcttccctgt gaagacaacg 3600 ataaaagctt ctgaacttgc tcagttgttt gtagaccggt tattcagtct ctatggtttg 3660 ccgggtgaca ttgtgagtga tcgagatcct aagttcacgt ccaagttttg gcaaacggtc 3720 tttgaaaaac tagagactaa actgagcatg agtagtggtg agcatccaca atctgatggg 3780 cagacagagc gcatgaatca gctattagaa gatatgctac ggtcttttgt gggaaacttg 3840 actcgacagg gagtatggga aaaatacttg cctttgcttc agtttgctca caatagcgct 3900 catcaatcgg ctattggcat gtctcctttt atggcgatgt atggttatga gcctaggtct 3960 cctgtgagtt tgaatttggc tttggttcga gttcctcatg cttgtgattt cctggaggat 4020 atgcaagaca agcttgagtt ggcaaaattg aacatgaggc aagctcaaga acgagacaaa 4080 agattggctg atgagcatcg tcgtcatcaa gagtacaaag ttggtgacaa ggttttcctt 4140 aagctgtcgg atgcacaacg gtctctaaaa ggaggtggca gtgctaagtt gtctccacgg 4200 tattgtggac cttggacaat tttacagcgt gtaggggatc ttgcatacac tttggacttg 4260 ccagttagtt cgaagattca tccaacgttc catgtgagca agcttaaagc gtgtttgcac 4320 tctggtgata tcgtggatca gtccatcatc caggttccag agattgatgc agagaaggct 4380 ggtccggcca atattcttgc tcaaagattg gtgaaaacac gccgaaagac aactagggag 4440 ttgttagttc agtggaatgg ttattccatg gacgaagcta catgggaaac ggaggatgac 4500 gtgaagagag tgtttccgag ttttggttat gacttggatg acattcctga ggaagaggag 4560 aattgagttc tatagccgta ttgctatatg atttgagccg tttgttctat tctcattctc 4620 ttgttttcca tgaccgtatt gtcatgtgag aaagccgtat tgctttcttt ctttcgtgac 4680 cgtttgttgc gacgttggtg ttgccgtttg cacatctttt ctccatggcc gtattgcctt 4740 ggactccctt catttgaggc tcgtttagct tctcgaggct accgtatgtg gctgggtcat 4800 gagggagggg agaa 4814 // ID Copia-33_PIT-I repbase; DNA; PLN; 4241 BP. XX AC AATU01002124; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-33_PIT_; KW Copia-33_PIT-LTR; Copia-33_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4241 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002124; Positions 121417 125657. XX CC 'AGTAT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 36..2390 FT /product="Copia-33_PIT-I_2p" FT /translation="MKKPDDLLRSDNYFHWEFNMRMTFARKGLGDHLTVVK FT QEHEMTEAWRLSDQNALALIAQRVSLKHQTRIRTAVTAKQAWDTLKEYYSR FT STLQNRVTMTRRLHEFAMEPGQTMATHLDRFNELETALEAVGDGIDDARQL FT VVLLGSLPTEYSTIVSNFENTRSVTLIEVKEKLHKEHDKQATQESEEVAFK FT ARPNSRTKSKVQPRAIKKFGGPSKNKFGGKCFACGKRGHKEADCRSSHQNG FT GDETLFMVHQGGGEGWLIDSGASSHMSPKKEDFVTYRPLKKSIRVTVADGA FT VMEAVGIENIHIRGYQDQRIVVQNALHIPKLDRRLLSVPRITSRSLVVKSG FT ATFCRFMRGNKTILKVPKVGKAYDLDVEPERAAVVKHKPVSTQWELWHARM FT GHASKARILSTLKATAGLPSITARGGELCSGCMKGKHTVSSFPGSTGAVKT FT SRVLELVHSDLMGPMKTASSGGSKYILLFVDDYSRYIVGFFLKKKSEVANC FT FRKYKALVENRFGHQIKAVRSDNGTEYVNKTFDGICRASDIVHQLTTPYTP FT QQNGLAERTNRAVMEMARSMLHHKRVSYKWWAEAVNTAIYLINRFVDNVNP FT HVTPYEICHGKRPSLDHLRVFGFIGYAHVHKEKRTKLDAKSYKCMLIGYAE FT QAKAYRVVDLETGKVKLSRSLALDEREVDGVYAEAPRDRPIEYIVWKDVDD FT ELMQPELNAGSIDVDMDPAEAEGVTDNVITMEDVQEAPAQVAALPVPDGIP FT ALPSTSPAAPRQLPAPEPSQRQLLCFSSHGEPPC" FT CDS 2215..3231 FT /product="Copia-33_PIT-I_1p" FT /translation="MSLPWKMSKKPQLKLLHFPSQTAFLLFLPLAPPLRGN FT YQLQNLLNASCYAFHPTESRRVSNQYTTSIVSYSGSGNRSDYRARDSVVAN FT ESDSGTMVVYDGSHDNELETGDRPSKRSRTETALIAGEVAFAADVPCTFDE FT AITGPDQKKWQEAIAAELNPLERNNNRIVIPRTSTMKPVGWKWVFALKRDA FT AGKIIRYKARLVARGFTQRQGVDFHDTYSPVASMNGIRIFPSVCCQKQLLI FT FQFDVDTAFLYGVLKEKVFMRAPPRVKVPSGSVLKLEKSIYGLKQASQVWH FT NTIHSALIEFGFATSCADPCISCTGMVTMMMTTLEVWLLSVFTLMTY" XX SQ Sequence 4241 BP; 1110 A; 1003 C; 1163 G; 965 T; 0 other; ggttatgaga ccaaggcgct tcgacgaaga gtaccatgaa gaagcccgac gacctgctcc 60 gttccgacaa ttacttccat tgggagttta atatgaggat gacattcgca cgaaagggcc 120 tcggggacca tctcaccgtc gtgaagcaag aacacgagat gactgaggcg tggaggttga 180 gtgaccagaa tgcgctggca ctcatcgctc agagggtgtc tctaaaacac cagaccagga 240 tacgcactgc tgttacagcg aagcaagcgt gggacacact gaaggagtac tacagccgct 300 ctaccctgca gaatcgcgtg acgatgaccc gcagactgca cgagtttgca atggagccag 360 gacaaactat ggccacgcat cttgaccgat tcaacgagtt ggaaacggcg ctggaggctg 420 ttggcgatgg gatagatgac gcacggcaac tggtagtgtt gctcggcagc ctgcctactg 480 agtacagcac catagtgtcg aatttcgaga atacccgaag cgtaactctc atcgaagtga 540 aggagaagtt gcataaggag cacgacaagc aagcaactca agagtcggaa gaggtggcat 600 ttaaggcccg ccctaactca cgaacaaagt cgaaggtgca gccgagggct attaagaaat 660 tcggtggtcc atccaaaaat aaatttggtg gcaagtgctt tgcttgtgga aagcgtgggc 720 acaaggaggc agactgcaga agttctcacc agaatggcgg cgacgagact ctgttcatgg 780 ttcaccaagg gggtggtgaa gggtggctga ttgacagcgg tgcatcttcg cacatgtcgc 840 cgaaaaagga ggattttgtc acgtaccgac cactcaagaa atctatccga gtaaccgtcg 900 cagatggtgc tgtaatggag gcggtgggta ttgagaacat ccacattcga ggttaccaag 960 accaacgaat cgttgtgcag aatgcacttc atattccgaa gctcgatcgt cgtttactgt 1020 ctgtaccgcg aatcacttct cggtcactcg tagtgaagtc tggagccacg ttttgcaggt 1080 tcatgcgagg aaataagacg attcttaagg tgccaaaggt gggcaaagct tacgatcttg 1140 atgttgagcc cgaacgagct gctgtcgtga agcacaaacc cgtttcgacg cagtgggagt 1200 tatggcatgc tcgtatgggt catgcttcga aagctcgcat cttgagtacc cttaaggcca 1260 cagcaggatt gccgtcgatc accgcgagag gcggcgaatt gtgctcaggc tgcatgaaag 1320 ggaagcacac ggtaagtagc tttccgggga gcacaggtgc ggtgaagaca agtcgcgttc 1380 tcgagctcgt ccacagtgat ctgatgggcc cgatgaaaac agcatcgagt ggcggatcga 1440 agtatatact tctgtttgtc gacgattact cccgttacat tgttggcttc tttttgaaga 1500 agaagagcga ggtggcgaac tgctttcgga aatacaaggc cctcgtagag aatcggtttg 1560 gccaccaaat caaggcggtc aggtcggaca acggcacaga gtacgtcaac aagacgtttg 1620 acggtatctg cagagcaagt gacattgttc accagctgac gacaccgtac actccccagc 1680 aaaacggctt agcagaacgc acaaacagag ctgtgatgga aatggctcgc tccatgctgc 1740 atcacaagcg cgtaagttac aagtggtggg cggaagcggt gaacaccgca atctacctga 1800 tcaaccgttt cgtggacaat gtgaatcccc acgtgacgcc atacgagatc tgtcatggca 1860 aacgcccaag tttggatcat ctacgagttt ttggcttcat tggctacgcg catgtacaca 1920 aggaaaagcg tactaaactt gacgctaaga gctacaagtg catgctgatc ggatacgcag 1980 agcaggcaaa agcgtatcgc gtcgtcgact tggagacagg gaaggtgaaa ctcagtcgat 2040 cattagcgct agatgagcgt gaagttgatg gtgtctacgc tgaagctcct cgtgacagac 2100 caattgagta cattgtgtgg aaagacgtgg acgatgaact tatgcaacca gagctgaacg 2160 ccggcagcat cgacgtggac atggaccctg cagaagcgga aggagtcacg gacaatgtca 2220 ttaccatgga agatgtccaa gaagccccag ctcaagttgc tgcacttccc gtcccagacg 2280 gcattcctgc tcttccttcc actagccccg ccgctccgag gcaattacca gctccagaac 2340 cttctcaacg ccagctgtta tgcttttcat cccacggaga gccgccgtgt tagtaaccag 2400 tacacgacaa gtattgtgtc ttacagcgga tcgggcaacc gaagtgacta tcgtgctaga 2460 gattccgtcg tcgcaaatga gagcgattcg ggcacgatgg tggtttatga tggcagtcac 2520 gacaatgaat tggagacagg agatcgacca tcaaagcgat cacggacgga aacagccctt 2580 attgcaggag aagttgcgtt tgctgcagat gttccttgca cttttgatga agctattact 2640 ggacccgacc agaagaaatg gcaagaagcg attgctgcgg agctcaaccc cttggagcgg 2700 aataacaaca ggatcgtaat tccgcgcacc agcacgatga agcccgtcgg atggaaatgg 2760 gtttttgcac tgaagcgtga tgctgctgga aaaatcattc gctacaaagc tcgacttgtt 2820 gcgcgtggct tcacgcaacg tcaaggtgtt gactttcacg atacgtattc cccagtggcc 2880 agcatgaatg gcattcgtat attcccgtcg gtgtgctgcc aaaaacagct cttgattttt 2940 cagtttgatg tggatacggc ttttttatat ggcgttctta aggaaaaagt gttcatgaga 3000 gctccgccaa gagtaaaagt tccttcagga tctgttctca aactagagaa atcaatctac 3060 ggactaaagc aagcttctca ggtgtggcac aacaccatcc actcggcgct catcgagttt 3120 ggttttgcta cgtcgtgtgc agatccttgt atatcgtgta ccggcatggt gacgatgatg 3180 atgacaacgc tggaagtctg gttattgtct gtctttacgt tgatgaccta ttgatcgcat 3240 cgaagaagag gcagcttgtt gaaaatgtgt gcaacttcct ccaagaacgc tttcgactca 3300 aggagctcga aattgccaaa tttgtgctgg ggattgagct gaatcacaat gtcgaacagc 3360 gcgtcctctg tctttcccaa aagagataca tcatggacgt cgtcagtcgt ttcaagcaag 3420 acggtgcaaa aactgctgaa agtagttttg cattttaaga ctcgcctcgc acggacgtgc 3480 gaggcgagtc ttaaattgtc gagagcagat tccccatcga ctgatgaaga attggctaaa 3540 atgcgtcgtg tgccgtatcg ggcgctaatg ggatctctgc tttacattgc tgtctgtacg 3600 agaccagaca ttgcttacgc cactactcat cttagccgat ttctcgacaa tcctgggcgg 3660 aagcactgga aggctgctat tcgtatattg cggtatctga aaacgacatc agaccatggt 3720 ttgcgctttg atgcttcgat tagccctgga aaacgtcgcg cctacaccga tgcggattgg 3780 gtaagcaacc tggatgatcg acgctccgtc tcaggtgtgc tcctgttgct aaatggcggc 3840 cctgtggtgt acaaagctaa ataccaacgc tctgtggctt tgagctctgc tgaagctgag 3900 tacatggctc tatcgctgtg tgcgcaagaa gtgatgtggg caagaacatt gctacaggag 3960 ctagattgcg aacaagtggg agccacgatc attctcgaag acaatcaggg agcgattgca 4020 ctatcgaaga acgtggggta tcagacacgc actaagcaca ttgatttgcg ccaccactac 4080 aatcgcgagc gcgtccaaga gaagcgtgta accgtagcgt atgtcgagac caagctccag 4140 ctagcggaca tcttgaccaa accagttggg acggcacagt ttcagttttt acggtcgtcg 4200 actggtatca ttccggtggt gaagcgtgac gtgagtggga g 4241 // ID PIF_Harbinger-5_PI repbase; DNA; PLN; 2092 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-5_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2092 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2092 BP; 417 A; 593 C; 534 G; 548 T; 0 other; agagtggttt agcagcagga acttgtgcga gttgtagact agcgccaatc acacaaccct 60 aatcacactg ccgcacacgt tggtttgcca gcgaagcatt ttgcagagcg aacgcgagct 120 cttatcagtc cttggtgtat actacatttg caaagcacac aagccagtca agatgctcga 180 agagagctta gtcctcgcag cgaccgctct ggacctcgtc ctcgtcgagg acgccgctgt 240 gctcttcgcc agatctccta ttccacgacc agtcctcaca ctgaagggca acttcaattt 300 caacgcatta agcgacggag actgtcgttt taatttccga ttctggaagc gtgacgtaat 360 tcggctgcac aaggcgctgc ggcttgagga agactacaag ctaccgagcc gccttcgcgt 420 tggtgaagtc gaggggctct gtgtgttgct gcgccggctc gcgtaccctg gacggtacgg 480 ggatcttgct gtgatgttcg gcaggtcgcc cagtgcgctg tgcctgatct ttcgcttcat 540 ggtggaccta atctacgcta agtgcagcaa gcttcttgcc cttgagtgcg gcatattgag 600 ctcatcaagg tgtggagctt acgctgcagc ggtcgttgca cgcggcagtc ctatcgacag 660 gtgtatcggc ttcattgatg gcacggtgcg tggcatcgcc cgaccagtgc gcaaccaacg 720 gcagtgctat aatgggcaca agcgcaagca tgcactcaag tatcaaggtg tcatggctcc 780 cgacggacta ttcatcgact tctacggccc cgttctcggt cgtcggcatg atgtctacct 840 gctacgagta agtgaagttt tgcagcgtct tgttagcgtg catggcgagt cgtactgctt 900 gtacggggat cctgcttacc caaatcggcc tacactgcaa gtcggtttca aaggctcacg 960 cctttcgcgg gatcaagaag cctttaatgg tgcaatgagt gctgtgcgtg tatctgtcga 1020 gtgggggttt ggtggaataa ctcggttgtg gccgtacgtg gatatgaagg tttcgtccaa 1080 gctcctactt tctcctgtcg gcaagtacta cctagttgct gctctactga caaactttag 1140 aaattgtact agtcccaacc agatcagtcg tttcttcgga gttagtccgc catcactcga 1200 aacctacgta gcgctcgctt ttcctactgc ggaattcgag ctgccatagc tcgcataacc 1260 tcaataaatg ccatgcgctc ttccttttct aacgctaaac gctctcgttc taatgctatg 1320 cggttttcct cgttcgctac ctttttgagc tccacagtac gtgcaaactc atctcgttct 1380 ttgacgtgtg ccatcaactc agcgaacttg tcatgcttgc tcgttctccc cttcattccg 1440 gtcatggcct cgtcccgcat tgcatctgcg cgctcgtcgt ctcgctgctt ggcttccttg 1500 gcctgcttct tctcctcctc caccgtctca gcgtcctcga acagctctag cacgtcggcg 1560 agcaggtcgt ccctctcggt gtgctcttca tcgataccac tggctgctgc acttctagcc 1620 attttggcct tgaagtcggt gagcagcaga gagcagcgct ctcggcatcg ccttgcatcc 1680 acatccagcg ccaaagccga ggccacggct gcccatgcag ccgtcttccc gccacgctcc 1740 acctcgaatg gattcgctgc gagcacctcc ttgagcagag catcgtcgtc gtcctcatcg 1800 aagcggactt gtgtcttgcg cttcttggtg gggcgagaag actccatggg cggcggctgg 1860 tgactgctgg tgcaagatgt aaactggaag agcactggaa ccgtgtgctc caccaacttg 1920 tggtttacag tattcggatg ttaaagtgca tagatataca tttgtatacg acttgtagaa 1980 agcttatcag tcgtagctac atcacttgaa cgaacgtgtg acgctcgtct ctggcattcc 2040 tcacaaaaaa aactgggcgt cacacgttcg tagctttctg ctaaaccact ct 2092 // ID RTEX-4_VC repbase; DNA; PLN; 5587 BP. XX AC . XX DT 26-FEB-2010 (Rel. 15.02, Created) DT 26-FEB-2010 (Rel. 15.02, Last updated, Version 1) XX DE A family of RTEX non-LTR retrotransposons - a consensus sequence. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-4_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5587 RA Kapitonov V.V. and Jurka J.; RT "First examples of RTEX non-LTR retrotransposons found outside RT metazoans."; RL Repbase Reports 10(2), 142-142 (2010). XX DR [1] (Consensus) XX CC RTEX-4_VC belongs to the RTEX clade of non-LTR retrotransposons. CC The consensus sequence is ~2% divergent from several CC copies of RTEX-4_VC. The 3' terminus is composed of the (ACA)n CC microsatellite. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user CC community. XX FH Key Location/Qualifiers FT CDS 98..1543 FT /product="RTEX-4_VC_1p" FT /note="ORF1." FT /translation="MDYIQRARNNPEELANNGLMVQLIDQIAGLAGGLAAT FT NQEIRTIKHEQAELKTQVKSLMKSGRGVYYDAFGLVHQNGLFYLDSMRIFT FT TGNVDESRIKNVLREADVNIKRIRLLGNDPNKDRKTWCAYFDITERPSFFR FT AAEVLRHQKVGIDDNLTQAGRIERKRMAPLRQDIMRQGAIPVWRNGAELYI FT KERPGGKAQPYGTRNDTDSDLGSAEYGADGGDSDGEGTAAAEQGADGSEYV FT GGNAGGGEGGASGSRGPGGGTSGVAAAATTAAAGKGCVRGPKMAAAGSAAP FT AVAGAANPTAAIAPATTSWARGVRAPLSPSVACRAGPAAIAPSVGANPTAR FT APPPPPPPEPIPPGHELALIANNKSKIPPEASLSAVKAKPPKQLRTEGTIG FT LMYTASPGTLERASYRPPAGRDPRVPGPDSRGVDAEGFRLVAGSTRNGQVG FT QGGSGSGGRDDRARDQLAVNRTNRFANLPNADEMDDT" FT CDS 1547..5428 FT /product="RTEX-4_VC_2p" FT /note="composed of the APE, RT, and CCHC domains." FT /translation="GLASRGLRILLWNVHGLLEAGVFKLNQAGIRSFVTSH FT DIVVIAEAHLKDTIEEKDIALEGFRIFRVERSKEALRADYGGVALYVRESL FT TRGITVVRKDNQLPGCEVIWARVSLSTGSSLLMGACYLAPETSRVYPDGGG FT TVSQRTAAAEAVFTRIQQSLTELRLGDEDVLIAGDLNARLSGAQHERNRAT FT PMDLPAYVNDIPDLEQSQAVCEVMGFEGLRDYQNYDGLGNRKCQDQVCNFF FT GAQLGALCRSEGLLVMNGRMRGDPEGRLTFPKGEAGGSMIDLFIATPRVLQ FT QYATFLRVGNLIELDGWEPTDHRPLTLVLNVTVDDESRCRDGKGRKARVEF FT DIARYQDYAEYFEGGSPTMNALSQVAEDLQRGVCNTTQAVERIGGALYKVL FT VRAFDTHRPTGMTAGGNTVWWNRECQQTRQRMLESRAHLGPGRVSNKSGPE FT WEAFRHARTDYNRAKRHAKAAYEEDRMRDFVAKCRQDQRALWRALGGKLRE FT RCAIDDIEVFREHFAGLLNAGVGETGPDGANRLLNFINFGQFLEGQEWRSS FT HSVLGRTAKAAEILDPPLTLEEVARAVDRLPNSKAPGLEVAPSECYRYARL FT PREEEGSASGNGGGRRRGEVNQLVPVLHVLLEHIRATGDFPRQFTTTVLTP FT IYKKGDPSMPSNYRGIAVGGALAKCYALVLLDRLVRTGETLSLRHRGQAGF FT RRGFGTTHHLFAKQYLTTRHSQPGQRPLIIVQIDFEKAFDKVPREIMWLRL FT QERGVEGSMLRSLMRAYDKVTMVIKTNGKAGGEFESKQGVKQGCPLSTELF FT GLYIETLADVIDMHDGINTGARPEDAPEVGNERVSILLYADDVSLLATTPG FT RMGELLNIVDMFCDDFGMRPNVSKCERLVFASDSDTRSAVQASCDELRLAG FT EAIPAKDSARYLGLVYGPERQFWACRQQLYDTARAAMFALSAKLDKLKLFA FT PDVRMRCFDTQVRAILLYGCQAWGPFMLAEVSDRLRKRSDANNLAEGPFEA FT CLKDRAVQLQISFMRQIVGAARPTHRLLFAELSQLPLHYHVLKQVVRFWNH FT VRLQRGSVAYQVLRQEVAESLSNPEGAGWGTLLLRFLCFLGHDVWKEAPQG FT LHEVDERVEWLMNKPMPEGVILEFKDRLMSGWKHTRLDVQPDVYPSDGKQP FT GIHMAKYKHWMGLAAEQAGRKEVLPHITMFIPRSANRKLMQFRLCCWALAA FT NRARKGRRYIPREERVCPCCGTDSHIEDEKHILLDCPVYDEIRSDMGFPRF FT EHMKDAMKWEPERLARMLERIWSHRNSIVPFGR" XX SQ Sequence 5587 BP; 1370 A; 1361 C; 1779 G; 1077 T; 0 other; agaatagaaa tgatagccca cacaactaca gtttgaaagg cgccgacaga gggtgacgcc 60 caggtgacgc ccagctcttc aagaaaaaaa aatagaaatg gactacatac aacgagcacg 120 gaacaatcct gaggaactgg ccaacaatgg cctcatggta cagttgatag atcagatagc 180 cgggctggcg ggaggcctgg cagccaccaa ccaggaaatc cgcacgatca aacatgagca 240 agcggagcta aaaacgcaag taaagagcct gatgaagagt ggccggggag tctactacga 300 cgccttcggc ctagtccatc aaaacgggct cttctatttg gatagcatgc ggatcttcac 360 gactgggaac gtggatgaga gcaggatcaa gaacgtccta agggaagcgg acgttaatat 420 taagcggatc aggctcctgg ggaacgatcc gaataaagac cgcaagacct ggtgcgcgta 480 cttcgatata acggaacggc catcattctt cagggctgct gaggtcctac ggcaccagaa 540 ggtgggcatc gacgacaact tgacccaagc ggggaggatc gagagaaagc gcatggcccc 600 gctgcggcag gacatcatgc gacaaggcgc gatcccagtc tggaggaacg gggccgagct 660 atacataaag gagcgaccag gcggaaaagc gcagccgtat gggacccgga atgataccga 720 cagcgacctg ggcagcgcgg agtacggcgc cgacggaggc gacagcgatg gagaagggac 780 tgcagctgcc gagcagggag cggacggcag tgaatatgtc ggtggcaacg caggaggcgg 840 agaaggaggg gccagcggca gcaggggccc cggaggtggc acctcgggag tggcagcagc 900 agctacgacc gcagcagccg ggaaggggtg tgtgcggggc cccaagatgg cggccgcagg 960 gtctgcagct ccggccgtcg caggggcagc aaacccaacg gcagctattg caccagcgac 1020 cacctcgtgg gcgcgtggtg tgcgggcacc gctatcccca tccgtggcct gcagggcagg 1080 gccggcagcg atagcgccct cagtaggggc caacccgacc gccagagccc ctcctcctcc 1140 accacctccc gaaccaatcc cgcccgggca tgagctggcg ctcattgcga acaataaaag 1200 caagatacca cccgaggcct cactcagcgc tgtgaaggcg aaacccccga agcagctgcg 1260 gaccgagggc accattggac tgatgtacac ggcgtcacca ggcactctgg agcgagcgag 1320 ctacagaccg ccagccggac gcgacccacg agtaccaggg ccggacagcc ggggcgtcga 1380 cgctgaaggg ttccgactcg tggcgggaag cacgcgaaac gggcaggtgg gccaaggagg 1440 aagcggtagt gggggcaggg acgacagggc acgggaccaa ctggcggtta acaggacaaa 1500 ccgcttcgca aacctcccta atgctgacga aatggatgac acctaggggc tcgcgagccg 1560 agggctaagg attttactat ggaatgttca tgggctactg gaggcgggag ttttcaagct 1620 caaccaggca ggaattaggt cgttcgtcac gagtcatgat attgttgtta tagctgaggc 1680 acatttgaaa gacactattg aggagaaaga catagctttg gaagggttcc gtattttccg 1740 ggtggagagg tcaaaggaag ccctgagggc cgattatgga ggcgtcgcgc tgtatgtacg 1800 ggagtcactc acgaggggta ttacggtagt gcgcaaggac aaccagctgc cagggtgcga 1860 ggtcatttgg gcacgcgtta gcctttccac aggtagcagt ctcctgatgg gagcctgcta 1920 cctcgcacca gagacgtcca gggtctaccc ggatggtgga ggcaccgtat cacagcgcac 1980 tgcagcagca gaagccgttt ttaccaggat ccaacagtca ctaacggaac tcaggcttgg 2040 cgatgaggac gtactgatag ccggggacct taacgcacgt ctgtctggag cacagcatga 2100 gcggaaccgt gctaccccga tggacctacc tgcttacgtg aacgacatcc cggatttaga 2160 gcagtcgcag gccgtatgcg aggtcatggg ttttgaagga ctgagggact accagaatta 2220 tgatggactc ggaaatcgaa agtgccagga ccaagtttgc aatttctttg gtgcccagct 2280 tggggcgctc tgcagatccg agggactgct cgtgatgaac ggccggatga gaggggaccc 2340 agaaggccgc ctaactttcc ctaaggggga ggcaggcggt agtatgatcg atttattcat 2400 agcgactccg cgtgtgcttc agcagtacgc cacctttctg agggtaggaa acctgatcga 2460 gttggatgga tgggagccca ccgaccaccg tcctttgacg cttgttctta atgttacagt 2520 ggatgacgaa agcaggtgta gggacggtaa aggccggaaa gcccgggtgg agtttgatat 2580 tgcacgatac caggattacg cggaatattt tgaggggggg tcccctacta tgaatgcctt 2640 aagccaagtg gccgaggacc tgcagagggg agtttgcaac accacacaag ctgtcgaacg 2700 cattggaggt gccctgtaca aagtcctggt gagggccttc gatacccacc gacctaccgg 2760 catgacggca ggtgggaata cggtttggtg gaaccgggaa tgtcaacaaa cacggcaacg 2820 catgttggag agtagagcac atctgggtcc aggccgggtg agtaataaat cgggtccgga 2880 gtgggaggct ttccgccatg cgcggacgga ttataaccgg gcaaaaagac acgcaaaggc 2940 ggcatatgag gaggatagga tgagagattt tgtggccaaa tgtcggcaag accaacgagc 3000 tttgtggcgg gctttaggag ggaagttgag ggagcgatgt gcgatagacg atattgaggt 3060 cttcagggaa cactttgctg ggctcttaaa cgcaggtgta ggggagacag ggcctgatgg 3120 tgcgaaccgg cttttgaact tcattaactt tgggcagttc ctagaggggc aggaatggcg 3180 gtcatcccac tcggttttgg gcaggactgc gaaggcagca gaaatcctag acccccccct 3240 cacgctggag gaagtcgcac gtgctgttga ccggctgcct aacagtaagg caccaggttt 3300 ggaagtagcg ccgtcggaat gttaccgcta tgcgcgtttg ccccgagagg aagaaggctc 3360 cgcgtcgggt aatggtgggg gcaggcgacg gggggaagtg aatcagcttg ttccggtact 3420 gcacgtgctt ctggaacata tcagggcgac tggggacttc ccacggcagt ttacaactac 3480 cgtcctcacc cctatttaca agaaggggga ccccagcatg ccgagtaact accggggcat 3540 agcagtaggg ggcgccttgg cgaaatgtta cgcgctggtc ctcctggata ggctcgttcg 3600 cacaggggag acgctctcac ttaggcatcg aggccaagcg ggtttcagaa gaggtttcgg 3660 tactacacat catctctttg ccaagcagta ccttactact aggcacagcc aaccgggaca 3720 gcggccgtta atcatcgtgc aaattgactt tgagaaggcg tttgacaagg tgccgcggga 3780 gataatgtgg cttcgcttgc aagagagagg ggttgaaggg tccatgctgc ggtcgctgat 3840 gcgggcgtat gataaggtta cgatggtcat caagacgaat ggcaaggctg gaggtgaatt 3900 tgagtcaaaa cagggtgtga aacaaggctg tccactatca actgagctgt ttgggctcta 3960 cattgaaact ctcgcggacg tcatcgatat gcacgacggt attaataccg gggcacggcc 4020 agaggatgca ccggaggttg gaaatgagcg agtgtccatc ctcctctatg ccgacgacgt 4080 tagccttctg gcaacaacac cgggacgcat gggggagttg ctcaacattg tggacatgtt 4140 ctgtgatgat tttgggatgc gcccaaatgt gtcgaaatgt gaacgcctcg tttttgcaag 4200 cgacagcgat actagaagtg ctgtccaagc atcgtgtgat gagctcaggc tggctggaga 4260 ggccataccg gctaaggata gtgcacgata tctggggtta gtgtatgggc cggaacggca 4320 gttctgggcc tgccgtcagc agttgtatga cacagctaga gcagctatgt tcgcgttgag 4380 tgcaaaatta gataagctaa agttgttcgc cccagatgtg aggatgaggt gtttcgatac 4440 gcaggtacga gcaatactgt tgtatggttg tcaagcgtgg gggccgttta tgctagctga 4500 ggtctcggac aggctcagga agcggagtga tgcgaataac cttgcagagg ggcccttcga 4560 ggcatgccta aaggacaggg cagtgcagct tcagatatct ttcatgcggc aaattgtagg 4620 agctgccaga ccaacacacc gcctcctgtt cgcagagcta tcgcagctac ccctacacta 4680 ccacgttctc aagcaggttg tgaggttttg gaaccatgtc cgtttacagc gtgggtctgt 4740 ggcataccaa gttttgcgac aggaggtcgc agagtccctc tccaaccccg aaggggccgg 4800 atgggggaca ctactcctcc gttttctatg ttttttgggg cacgatgtat ggaaagaggc 4860 cccgcaaggg ctacacgagg tagacgaacg agtggagtgg ctgatgaaca agccaatgcc 4920 agaaggtgtg attttggagt tcaaggaccg attaatgagt ggttggaagc atacgcgttt 4980 agatgtccag cctgacgtgt atccgtcaga cggcaagcaa ccaggaatcc acatggcgaa 5040 gtataagcat tggatggggc tggcggccga gcaagcgggc aggaaggagg tgctcccgca 5100 catcacaatg tttatcccac gttcggcgaa tcgcaagctt atgcagttta ggctttgctg 5160 ttgggcactg gcggctaaca gagcgcgtaa gggacggcgt tatataccta gggaggagcg 5220 agtatgccct tgctgcggca ctgatagcca catcgaggat gagaaacaca ttttgctgga 5280 ctgtccggtt tacgacgaaa tcagatctga tatgggcttt ccacgcttcg aacatatgaa 5340 ggacgctatg aagtgggaac ctgaacgcct ggcaaggatg ctggaacgta tatggtctca 5400 ccgcaactct atcgttccct ttggtcgtta gtatacttca tcacttgttt cgttggaagt 5460 gcgaggtagg atggtgctta taggcgattt ggcagccctt gagccctcgg ctcgtactag 5520 ggtggtttgc aggtacgggg aacgcaccca cgaccatgta acaacaacaa caacaacaac 5580 aacaaca 5587 // ID Gypsy1-PP_I repbase; DNA; PLN; 5455 BP. XX AC scaffold_127; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1-PP; KW Gypsy1-PP_LTR; internal portion; Gypsy1-PP_I. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5455 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 423-423 (2008). XX DR Genome; scaffold_127; Positions 1100189 1105643. XX CC Positions [2319-2774] - Reverse transcriptase CC Positions [3824-4303] - Integrase core CC 'CCACA' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2951..4813 FT /product="Gypsy1-PP_I_1p" FT /translation="MVFITAPILVHPDFTKAFYLETDASDFALGVVLSQMG FT VDEKLHPVAFYSRKFSAAEINYEIHDKELLAIVDSFQEWRHFLEGTVHPVT FT VYTDHKNLEYFMSVRVLNRRQAQWSMSLSRFDFVITYWPGKQQGLSDALSR FT RSYLAPKAGDAAFDQQCTTLLKSEKFRLNAAIVPIDADFLDQVWAAIIEDS FT LALDIKQHASDDKFKMERDLVYFEERLYIPKGPTRLRVLQSRHDFPTAGHF FT GFNKTLELISRDFWWPQMWKDVKDFVVSCDICSRSKNPRHRPYGLLQPLPI FT PCRPWSSVSIDFITDLPPSNSFDSIFVVVDRLTKMAYFVPCKKTLSSEDTA FT RLFLDNVYRYHGLPDDIISDRGTQFVSKFWKSLFEILKVDIKLSSTFHPQT FT DGQTERMNQVLEQYLRCTINYQQDDWVTYLPLAEFAYNNTLHASTQQTPFF FT SNCGYHPKLDLWSSSTINNPAAEGLVKELLQLQTTLKLQLQTAQESYRASV FT DKFQNQAPKFMIRDKVWLLRRNIKTKRPCDKLDYRRLRPFVIQKQINPVAY FT CLELPATMKVHPVFHVSLLEPYRESSFPEKVQCPPPSIEIENHKEYEMEKV FT LDSRQRRDKLEYFVHWSGYDINE" FT CDS join(1602..2564,2568..2888) FT /product="Gypsy1-PP_I_2p" FT /translation="MVPLHLGIQELQVDALLDSGASACFIDEEFAKLHNIS FT LVKKLKPVHVEVIELKVRLENHESNIVFNVIKTPSCPIILGLSWLDRYNPL FT IDWKLRKVTFPTNSLKVESAKTMSRNKSLFIDARAFMKEAKQNTPLVIFAT FT PTQEDATPTLVIPKQYEEFKDVFEKKNADMLPEHRPYDCAIELQEGAQPPF FT GSIYNLSQTELTELRKYIDENLAKNFIRHSKSPAGAPILFVKKKDGSLRMC FT VDYRGLNKVTKKNRYPLPLISGLLEQLGRARIFTKIDLRGAYNLVRIKEGD FT EWKTAFRTRYGHFKYNVMSFGLTNASAVFHMMNDIFREHLDDFVVIYLDDI FT LIFSKNEEEHEKHVRLVLKKLRERGLYAKLEKCLFHQTEMEFLGFIATTEG FT LKMDPKKVEAIMSWEVSKTVRDVQCFLGFANYLD" XX SQ Sequence 5455 BP; 1613 A; 1106 C; 1201 G; 1535 T; 0 other; atttgtcgag actaccttta tcttaatatc agagctgaat ccttcttgtt tgagagcgga 60 ttacccctct tcttgaaggt attctagcgc tttaggggtt gtggattacc ttcctctaaa 120 ctgatatttt ctcaatcaca atatcagagc ttagttcttt gaggcagaga gtggactacc 180 cctttccttg gagatacttg agcgttctaa gggttgcgga gtaccctctc ttggactgat 240 attaattcct tcttagagct ttgccttctt gatagagtgc ggattacccc tcttctcgaa 300 agcattgagg catttttaga ggttgcagat taccctcctc taaaactgaa atcgtttagt 360 attttttttt cttttctccg agtaggtttt agtgacaggt agtgctacaa ttttctccaa 420 gagacttagc aatttcttct tctctcaaaa ttttaatcca tctattctct aaatatggaa 480 gtagaccagg tcatagacaa tgcatctcca caagtagaca atagagtggc aactcttgca 540 gatcttcaag ctcttatgaa tagtgtacga aaggagattg catttcttcg caatccaagt 600 aaagaacctc aaattgatct agtgaccgaa gaagctagac gcgaaattca tagcctacaa 660 caagagatta ttcgactgag agaagcaaga catgcgtcac atacgacccc tatggatact 720 tcaaggatta gtacgaaaga accaaaagcg agtatgccag acaagtttga cggaacaaga 780 gccaacttcc gaggttttat gcaacaagta cggctttacc tacgtctata cccttctcgt 840 tatccgaatg gatttaccca ggttgctttc ataggtactc ttctatcagg aaatgctcgc 900 tcttggtttg ctccactatt ggagaaggat tcttcaatat tgtacgacct agaggctttc 960 atagagagac ttactgctgc gtttggagat agcgatcgag aaagagtggc tgaaagaaag 1020 atacaaaatc tgcgacaagg atcacgttct gctgcaatct atgctgcaga atttcaacag 1080 cttacatgtg atcttgatta gaatgataag gcgttcatga cacgatttcg atatggattg 1140 agagatgatg tgaagaactt attgatcacc atgcctaagg cggatacttt agaagaactt 1200 atatctcagg caattatttg tgacaaccgc ctctttgaat tacgacaaga aagacgatca 1260 agctggagaa atgatggagc atttgctaca tttccaaaag gtccagagaa tcactccaca 1320 gatcctgaat ccatgcaaat tgatgcggta cgtttcaaac ccttcacagc tgaggaaagg 1380 aagcgacggt ttgaacaaaa cttgtgttta tattgcggag aagcgggcca taaagctgta 1440 gattgtcgga agaaacagaa gcctcaaaca acaagactca ggagtacaag catgcaggaa 1500 aacaaggacg cccagccaca atagggaccg tgcggctgga catctcaaca tccaaaatta 1560 atcaaggtcc ctttctctca gctcaacctt cagattgttt tatggtacct ttacatctgg 1620 gtattcaaga actacaagtc gatgctttat tagactcggg tgcatccgct tgctttatag 1680 atgaagagtt tgccaagctt cacaatattt ctcttgtaaa gaaacttaag cctgtccatg 1740 tagaagtcat agaattgaag gtacgtcttg aaaaccatga gagtaatatt gtgtttaatg 1800 ttatcaagac tccttcatgt cctatcattt tgggactatc ttggcttgat agatataatc 1860 cattgataga ttggaagttg cggaaagtga catttccaac aaactcgttg aaggtggaat 1920 ctgccaagac aatgtctaga aacaaatcct tgtttataga tgcaagggct ttcatgaagg 1980 aagccaagca aaatacacct cttgtcatct tcgcaactcc gactcaagaa gatgcaactc 2040 cgactttggt tattccaaag cagtatgaag aattcaaaga tgtctttgaa aagaagaatg 2100 ctgatatgct gccagagcat cgaccctatg actgtgccat tgaattgcaa gaaggagcac 2160 aaccaccttt tggatcaatc tacaatttgt cgcagacgga gttgactgag ttgcggaagt 2220 acattgacga gaatctagcc aagaacttca tccgtcattc gaagtcgcca gctggggcac 2280 caatcttatt tgtgaagaag aaggatggct cactacggat gtgcgtggac tatcgaggtc 2340 tcaacaaggt gacaaaaaag aatcgctacc cactgccttt gatctctggt cttttagaac 2400 aacttgggcg tgcaaggatc tttacaaaga ttgacctaag gggagcttac aaccttgtgc 2460 gaattaagga aggagatgaa tggaagacag catttcgaac aaggtatggc cattttaaat 2520 acaatgtcat gtcatttggt cttactaatg cttcagcggt cttttaacac atgatgaatg 2580 acatctttcg agagcatcta gacgattttg ttgtcatcta tctagatgat attttgatat 2640 tttctaagaa cgaggaagaa catgagaagc acgttcgtct ggtactcaaa aaattacggg 2700 agcgaggact ctatgccaaa ttggagaagt gcttatttca ccaaactgag atggagtttt 2760 tgggattcat cgcgactacg gaaggcttga agatggatcc aaagaaggtg gaagcaatca 2820 tgtcttggga agtttcgaag acggttaggg acgtacaatg ttttcttgga tttgctaact 2880 acctcgatta acgtgtaagg acaagctcga atggggacct atcacagaaa aagcatttca 2940 agatttgaag atggtattta ttacagctcc aatcttggta catccggact ttacaaaggc 3000 cttttatttg gagacagatg cttcggattt tgctttggga gttgtacttt cacagatggg 3060 cgtagatgag aagctccatc cagttgcgtt ctattctcga aaattctctg ctgctgagat 3120 caactatgag atccacgata aggaactcct tgctatagta gattctttcc aagaatggcg 3180 ccactttctc gaaggaactg tacatccagt gaccgtatat acggatcaca agaatttgga 3240 gtattttatg tcggttcggg ttttgaatcg gcgtcaagct cagtggagta tgtcgctatc 3300 caggttcgac tttgttatta cttattggcc tgggaagcaa caagggttgt ccgatgcatt 3360 atcaaggaga tcatatctcg cgccaaaggc tggagatgca gcatttgatc aacagtgcac 3420 gacattgttg aagtcagaga aatttcggct caacgcagct attgtaccaa ttgatgctga 3480 cttcctcgac caggtatggg ccgcaatcat tgaagattct ttagcccttg atatcaagca 3540 acatgctagt gatgataaat tcaagatgga aagagatcta gtatatttcg aagagcggtt 3600 gtatatccca aaagggccaa cacgactccg agttcttcaa tctcgtcatg actttccaac 3660 tgcgggacat tttggattca ataagacctt ggaacttatt tcccgtgatt tctggtggcc 3720 tcaaatgtgg aaggatgtga aagattttgt tgtatcttgt gacatttgtt caagatctaa 3780 aaaccctcga catcggcctt atggacttct acagccattg cctattccgt gccgaccatg 3840 gtcttcggtt tccatagact ttattacgga tctaccacca tcgaattcat ttgacagcat 3900 ttttgttgtc gtagaccggc ttacaaagat ggcatatttt gtcccttgca agaagacatt 3960 gtcaagcgaa gacacagcaa gactctttct tgataatgtg tatcgatatc atggtctacc 4020 agatgatatc atatcggatc gaggaaccca gtttgtgtca aagttttgga aatctctttt 4080 tgaaatattg aaggtggata tcaagctttc ttcgacattt catcctcaaa cggacggcca 4140 aacagaacgg atgaatcaag ttttagagca atatttacgt tgcaccatca actatcaaca 4200 agatgattgg gtcacatatc taccgctagc cgagttcgca tataacaaca cccttcatgc 4260 gtcaactcaa caaacgccat tcttttccaa ttgtggatac catccgaagc ttgacttatg 4320 gagttcgtca acgattaaca atccggcagc tgaaggattg gtgaaggagc ttttgcagct 4380 tcaaactaca ttgaagcttc aattgcaaac tgcccaagaa tcttacaggg cgtccgtgga 4440 caaatttcag aatcaggcac ctaaattcat gattagagac aaagtttggc tgcttcgacg 4500 aaatattaag accaagcggc catgtgacaa attggactat cggagattga gaccatttgt 4560 tatccagaag cagatcaatc ctgtagcgta ttgtctggag ttaccagcta ctatgaaggt 4620 acatcctgtc tttcatgttt ctttgttgga gccttatcga gaatcgtctt ttcctgaaaa 4680 agtacaatgt ccaccaccta gcatagaaat agagaaccac aaagaatacg agatggaaaa 4740 ggtcctggat tcacggcaaa gacgggataa attagaatac tttgtgcatt ggagcggtta 4800 cgatattaat gaatgaacat gggagccggt cgaaaatctc gcgaatgcgc cgcaaaaggt 4860 acaggagttt catcgacgat atcctgagaa atccaagccg gttcgacgat agcttcatac 4920 tgaagcttgc tcatccagaa aacagaaaag aggagagagc accaccaaaa tccatagttg 4980 atgtagtcat tctctccaag atagcgtaga actttgttag tagcccaagt ttgttcttat 5040 tgttttagcc tttgaatatg gatagccaag atactacact tgtcatgtca tctcaagcaa 5100 ctagctcacg aagacgaccg cgagatgaag aaccgcttgc accacgacga cgtcgaagga 5160 ttccgagcaa cagatcgttg gtgattgtat ttgaggtcga gcctgcctac aatggtcagc 5220 cagaaggagt gtttgcaaga caatttcaca atgaagacac ggaggttcct gcttggtcag 5280 aagttgaagg cgtgggccac taccgttggc ttcaaggacc attgaatcac ttgcctcgtg 5340 aacaacaatt ggagttcata gcagaggtta tgcgacagat gttcattttc ttgcgttggt 5400 attgactgac aataacattg cttctcggag acctcaaagc taaaggagga ggtga 5455 // ID Gypsy-38_PIT-LTR repbase; DNA; PLN; 434 BP. XX AC AATU01001024; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_PIT_; KW Gypsy-38_PIT-I; Gypsy-38_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-434 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001024; Positions 28350 28783. XX SQ Sequence 434 BP; 109 A; 93 C; 110 G; 122 T; 0 other; tgtagtgggt cgtggtttaa aagcccaacc gagcccatgc aatgcagtcg agttgcggca 60 gcaaggttga ccatcatcat gtggttgcag tcagccatgt aaatgtggct cagcgagata 120 tggagttgaa gctaagcgtc ttttgttaag tcaaagacgc ttatcagaac tgtctgctgt 180 tatctacaac tgttcgtcta ctcaagctgg tgcatgttga agcgagttga gcaccatcac 240 taggagttga gcaccatcac taggacgcta gtgatggcaa tgtggggagc aagtcgaagt 300 acatgtttta gttttctcag tttcattttt gacagctagt cgacaagctc aatacactcg 360 gcgacaagac tttacaggaa gtgccagctt ccttcgagtg tctttgaact ttcttttgag 420 cgcgacctac taca 434 // ID Copia-4_ES-I repbase; DNA; PLN; 6590 BP. XX AC CABU01009301; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_ES_; KW Copia-4_ES-LTR; Copia-4_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-6590 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01009301; Positions 23636 30225. XX CC Positions [3263-3550] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 3620..6433 FT /product="Copia-4_ES-I_1p" FT /translation="MGHRAWEGRLVGYSMDSKSYRIYNSETRRVRVNRNVV FT FIETPPVAPALDEGGFDGGEFTYDNHDDMVRDVRNYTFNHSVDSLSPDHDV FT GDIPVIELLEQIRATTNRDLGVSHAGTAPNDDASRTSGGTPTGGSPASPGG FT VNPLETDDGASPPGSSPDFAPLGSSPSGPAPSSAVPRGGSARGRGLSRGGR FT SARGGSSRGGSAQGGITPRGGRGSASGTGSRGGRGSTSAPAVTRSSSRMPT FT SKTIRELRRISYAFTAKGEFPDVAHRDASFGFTEYAYAMGASQPDVPRTIQ FT EARAMPDGAQWNAAAEREIASLKERQVYKLVPRKAVPPGRKRIKSKWVFKR FT KADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELD FT QMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPS FT NWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDDQVYLTLYVDDLLLAGNNAN FT VILMIKEKLKQRFKKADMGDVKLVLGMEIKRDRTQGTLTVSQEAYSKSILE FT RFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVL FT RYDIMYATGQLARAMAKPSKIHMVAAKHTLRYLAGTMDFRITYKVGGFKLA FT TFSDSNWANNPDNGKSTSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIAS FT ALAMKEAVFCSNVLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRTKHI FT ALRFFYIRELVSEGRISIHYTSRRKATLLTSGQSILTSIGSNTCWTSSGAS FT TSTTSSATSSSNRVICLCVCYEVFLHLFCLCESACSFGSQHSASHHHWLNE FT PCRIESYDALVYARNNSRYSLQAHEGIVARVKHELSLGTLVVETHETNEFR FT YAGNECTCFNIHHCSLVQFRATFIEGECYGNVST" FT CDS join(987..1937,1941..3200) FT /product="Copia-4_ES-I_2p" FT /translation="MAESSSSRLHRMLDSIGKCAGHSGFREWKIKLRQAVI FT LHAPELLPVLNGNARPSATAANAQDVAAWDKANGRLFSLLFFVTSGSAQLT FT VHTHEGAADSDMGDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGD FT PIDFFTKGWDLKLRLKVLGEEVSDPVYLDIMLSGLTKAPEFKFIREMHYRD FT NFTSVDSLQATANRFFVDQQSCNASGPVVSGRGALMAVASDTDQCRRCKAY FT GHFQRDCPQQVQKSRPKQGKKKGANKRGSGGSAQPKWCSYHNTKTHSDAEC FT QKQKEIRENKKKELEGLAANLVLLQAGHANFLQLPNIGPTTTPRHTAMLSA FT KSKRRSGKTRKRSLKGWRRTWCSCSELAMPTFCNSQISGVLTWRNRLRRWR FT NRLRQSLLSFGFSFNALGTSLAEATSSSASSQPPSAASAATQAAPASASST FT SSAQDHRLPSGFFGAFMATHAELSLAPFRSNGSFIRMVVDSGATDNYLDPG FT LTPGLRAHMRDVEHLRVPHQIVAGGQHVLKGVATGTIFGAVTDDKGNDRHV FT SFRVIMVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQNLGVD FT ATTRKCVYSIEVKLGGEPGGPTVLGDAPDALALKVESAGLWHRRMGHINRK FT SLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVS FT VDTLGPFTPTALGGLKYATKFVDQQTKWAEIVFRPVL" XX SQ Sequence 6590 BP; 1468 A; 1789 C; 1870 G; 1463 T; 0 other; taataggtta tgagcctcga ctgtgtgtgt caggaggcct gcggcgactg cgtcttctgc 60 tggtgtcgag cactgtggag aacacacaca tcttccagct tgggtattct ccgcggggag 120 ctaccgtcgg agtctacttt ctgctggagg tcacactgag tcaacccgct tgcttattgg 180 gcccggactg atcacctggg ttcttggctg cacatttcgg tacgatactg tgtaaagcat 240 tcgggggcat aatttctagg cgttgacttc ggtcggcgaa tagagttgtg caggtagttg 300 gttctgcgtg cggagtgccg tcctcggtgt tctgtgtgtt cctaactgac tgccactttc 360 gcctgcgcgt ggtccttcgc gaggcgtata gtctgtctaa gatatctccc acgtgctgag 420 ttgccaagct tggtagcgtg tgcaggctga ggatacgact gctagctggt agccgactgc 480 tgctacagct acacccacgt gatccgctca cgtaaattta cctgcgcgtt gtgctatacg 540 cgaggtacgc ctgtccaaga tatcttacgc gtactgtgtg tataccggtg cgagtgtagg 600 ttgaggatct gaccaggcct gtttgcatcc gtgcagcagc cacaagtctg cgccgaaaga 660 cgcgtagcaa gtctaagcag tacatctgac ccgtgtgcct gcaggacgag gccggagttg 720 gcaacttcgt cgccgcaaca ccgcagccta gccacctgcg gtaggtcata gctgtgctcg 780 tagtagcgca gtagtccgag cggacgctac accgcttccg ctggaagtgg gttgtacgct 840 acgaagctgc gacctgcacc aagcctacct ctgtgtagca tagcatcacc gttttgttct 900 ggcgcgtcga accttcggag gtaatcgagg cgtcttacgt gtgctgaaaa ccgtatagcg 960 ctcggcgtgt gaccctggtt tcagtgatgg cggaatcctc gagctccagg ctccaccgca 1020 tgctggactc catcgggaaa tgcgcgggac attcgggttt tcgcgaatgg aagatcaagc 1080 ttcgacaagc agtcatcctc cacgcgccgg agcttctccc cgtcctcaac ggaaacgcac 1140 gtccttccgc aaccgcggcg aacgcgcagg atgtggccgc gtgggacaag gccaacggtc 1200 gcctgttctc cctcctcttc ttcgtgacct ccgggtctgc gcagctcacc gtccacactc 1260 acgaaggggc ggcggatagt gacatggggg atgggacagc ggcctggaga gccctcaacg 1320 agcgtttcga tgctcaaacc caggaagctc ggcgtgcgtg tcacaacgag ctgttcaacc 1380 tgcgacacct tgcgggcggt gaccccattg acttcttcac aaaggggtgg gatctcaagc 1440 ttcgccttaa ggtgctgggg gaggaagttt cggacccagt ctacctggac atcatgctct 1500 caggcctgac caaggccccg gagttcaagt tcatcagaga gatgcactac cgtgacaatt 1560 ttacttcagt agacagtctc caggcgacgg ctaaccgttt ttttgtggat cagcagtcgt 1620 gcaacgcgtc gggccccgtg gtctcgggcc ggggggcttt gatggcggtc gcgtccgaca 1680 ccgaccagtg ccgccggtgc aaggcgtacg gacacttcca gcgcgattgt ccccaacagg 1740 tccaaaagag ccgtcctaag cagggcaaga agaagggagc caacaagcga ggaagtggtg 1800 ggagtgcaca gcccaagtgg tgctcctacc acaacaccaa gacacacagc gatgctgagt 1860 gccaaaagca aaaggagatc cgggaaaaca agaaaaagga gcttgaaggg ttggcggcga 1920 acttggtgct cctgcagtga gctggccatg ccaactttct gcaactccca aatatcgggc 1980 ctaccacaac accaagacac acagcgatgc tgagtgccaa aagcaaaagg agatccggga 2040 aaacaagaaa aaggagcttg aagggttggc ggcgaacttg gtgctcctgc agtgagctgg 2100 ccatgccaac tttctgcaac tcccaaatat cgggagtgct cacctggcgc aatcgtctcc 2160 ggcggtggcg caacaggctc cgacagagcc tactttcgtt cggattctct ttcaacgccc 2220 tcggaacttc cttggcggag gcaacctcgt cgtctgcctc ttcccagccg ccttcggcgg 2280 cgtctgccgc cacacaggcg gcacctgcat ctgcctcatc aacgtcgagt gcgcaggacc 2340 accgactgcc ttcaggcttc ttcggtgcgt tcatggcgac tcatgcagag ttgtcgcttg 2400 ctccttttcg ctccaacggt tcgttcatcc ggatggttgt ggacagtgga gcgacagaca 2460 actacctcga ccctgggctt acaccaggat tgcgggctca tatgcgcgac gtcgaacacc 2520 ttcgggtccc acaccagatc gtcgccgggg gccagcatgt cctcaaaggt gttgcgacgg 2580 ggactatctt cggcgctgtc acggatgaca aaggaaatga ccggcacgtc tcctttcgcg 2640 tcatcatggt accaggactg ggcaccaacc tcttctctgt gacattggcg atgctaaagg 2700 gggtggcgac gttgtttcat ccggacaacc ccaggttgga gtcgggggac gtggttttcc 2760 cgatgcagaa tctcggggtg gacgccacga ccagaaaatg cgtctactcc atcgaggtga 2820 agttaggggg tgaacctggg ggcccgacgg tcctcggaga cgcccctgat gccctcgcct 2880 tgaaggtgga gtccgctggt ctctggcacc ggcgcatggg gcacatcaac cgcaagagct 2940 tggacgttct aaggaaagaa ccggtcaacg gcgtcgacta caccggagac gtgaaggact 3000 gtagtgtctg cccgctcgga aagagcgcgc aacaacctca tccaaagcag gccacctacg 3060 gcgtcttgcg ccccttccaa cacgtttccg tcgacaccct tggccccttc acacctacag 3120 cgttgggcgg actcaagtat gccaccaagt tcgtcgacca gcagaccaag tgggcggaga 3180 tagtattcag acctgttctg tagactccct cgcgttgttc aacaaaggga ccgtggttcc 3240 taccggcgaa cgcattcatt gcctccgcgg ggatcaaggc acagaattca cgagtgcgga 3300 attccgccag tactgtcaag atatcggcat caagctggag ctcacctctc caaacacccc 3360 tcagcagatc ggagcgaacg agcgtgcggg tcggacgatt ttgaatatcg tgcgctgtct 3420 gctcgctgac tcaactctac cgaacttcct ttggggggag ctgatccaga cggcagtcta 3480 cctgagcaac cgggttcctc atgcagccct gcaaaacggg acgccgtaca aggccctcta 3540 cggcaaggat gcctaccttg gtcaccttcg ggtgatagga tcaagggcgt tcgtgcacga 3600 agagacccac accaggaaga tggggcatcg tgcttgggaa ggacgccttg tcggatacag 3660 catggacagc aagtcgtacc ggatctacaa ctctgagacg cgacgtgtac gggtgaatcg 3720 aaatgttgtc ttcattgaga cacctcccgt tgcgcctgcg ttggatgagg gtggcttcga 3780 cggcggggag ttcacgtacg acaaccacga cgacatggta agagacgtgc gaaactatac 3840 tttcaaccac tcagttgatt cgctctctcc tgatcatgac gttggggaca tacctgtgat 3900 tgagcttcta gagcaaatcc gtgcgacaac caaccgtgac cttggggtta gtcatgcagg 3960 aactgctccc aacgacgacg cgtctaggac ttctggtggt acacctacgg gaggtagccc 4020 tgcctcgcct gggggagtaa acccccttga aacggatgac ggtgcgtctc ctcctggttc 4080 gtcacctgat tttgcgccgc ttggttcatc gccttctggt cctgcaccgt ctagtgctgt 4140 accgcggggt ggatctgcgc gtgggcgcgg tttgtctcgt ggtggccgaa gtgctcgtgg 4200 tggatcttcg cgaggaggat ctgcgcaggg aggcatcacg ccacgtggag gtcgcggctc 4260 ggcaagtgga actggttctc gtggtggacg aggatccaca tcggcacctg ctgtcaccag 4320 gtcgagttcg cgaatgccca cctcaaagac catccgcgag cttcgtcgta tctcctacgc 4380 atttaccgcg aaaggggagt tccctgacgt tgcccatagg gacgcctcct ttggtttcac 4440 ggaatatgcg tacgctatgg gggcatccca accggatgtt ccacgaacga tccaagaggc 4500 aagggccatg ccggacggag cgcagtggaa cgctgctgca gagcgcgaga tcgcgagtct 4560 caaggaacgt caagtgtaca agctcgtccc gcgcaaggca gttcccccag ggaggaagcg 4620 gattaagtcc aaatgggtgt tcaagcgtaa ggcagacggc tccttcaagg ggcgtctagt 4680 ggcgcaaggc tggaaccaag tgcctggact ggactgcggc agcacctatg ctccggtgtg 4740 caggttacag agcattcgga tgttagcgtg catagccgtg caattcaacc tggagttgga 4800 tcaaatggac gtgtccacag ccttcctcta cgcggacatc ctggagaacg tgttcgtcga 4860 acagccacct ggcttcgagg tcaaggacaa ggatggaggt gatctagtga tgcagctaca 4920 gaagagcctc tacgggctgg cccaaagccc cagtaactgg ttccacacca tcgacccttt 4980 ccttgttgag ataggtttcg ttccgctcaa gtctgacact tgcgtctacc tgtacgacca 5040 cgacgacgat caagtctact tgacgctcta cgttgacgat cttcttctag ccggaaacaa 5100 cgccaacgtc atcttgatga taaaggagaa attaaaacaa aggttcaaga aggcagacat 5160 gggcgacgtg aagcttgtct tgggtatgga aattaagagg gaccgcaccc aaggtacact 5220 gacggtttcc caagaagcgt acagcaagtc catcttagag aggttcggga tgtctgaatg 5280 caaaccaacc agcacgcctg gctacggttc ggagctctcc aacaagcaac cagaggacac 5340 tctgctaggc gaggaggaaa cgcgacgtta tcagggcatc gtggggtgcc tgatgtacat 5400 cgctcaagtg ctccgctacg acatcatgta cgctacgggc caactggccc gcgcaatggc 5460 gaagcccagc aagatccaca tggtggcagc taaacacact cttcgctatc tggccggcac 5520 catggatttt agaatcacgt acaaggttgg aggcttcaag cttgcgacgt tttcggactc 5580 caactgggcg aacaaccctg acaacggaaa gtccacctct tgctacttga cgatgctagg 5640 caatgcaccg gtgagtttta agtcggggat acaaggtcca actgccatgt ctaccatgga 5700 ggcagagctg attgcatcgg cactagccat gaaggaagca gtgttctgct ctaacgtgct 5760 aactgagcta gggttcggta aggagtttgc gcaagtgccg ctgtactgcg acaacacggc 5820 gacgctgcac gcgcttggaa accgctcctt cagctcgagg acaaaacata tcgcccttcg 5880 tttcttttac atccgagagc tagtatcgga aggacggata tcgatccatt acacatcccg 5940 acggaaagca accctgctga catcgggaca aagcatctta acaagcatcg gctcaaacac 6000 ctgctggaca tcatcaggag cttcaacgtc aacgacttca tcagcaacaa gttcaagtaa 6060 tcgtgttata tgtttgtgtg tttgttacga agtatttttg catctgttct gtttgtgtga 6120 atcagcgtgt tctttcggta gtcaacattc ggcctcgcac catcactggt tgaacgagcc 6180 atgtaggatt gaaagttatg atgctttggt ttatgcaaga aataatagca ggtactcttt 6240 gcaagcgcat gaaggtattg tagcacgtgt aaaacatgaa ttatcacttg gtacattagt 6300 ggttgaaacg catgaaacga atgagtttcg ttacgcagga aacgagtgta cttgctttaa 6360 tattcatcac tgtagtttgg tacaattcag agcaactttc attgaggggg agtgttatgg 6420 aaatgttagc acatagccag tattagtcat ttttcagtag cactgctctt gtatgtcgta 6480 gatctcatat gtgtcggttc gaatgtcggt tcgaatgtaa cttacgtatg tgtatgcgga 6540 ggaattactc tcgcagtatt ctctgcgttt attattcctt aagtattctc 6590 // ID Gypsy-53_PIT-I repbase; DNA; PLN; 4902 BP. XX AC AATU01004845; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_PIT_; KW Gypsy-53_PIT-LTR; Gypsy-53_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4902 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004845; Positions 51555 56456. XX CC Positions [3606-4112] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 1448..2797 FT /product="Gypsy-53_PIT-I_1p" FT /translation="MVDAAGAAGFAPELLEDLRKLVFEYADVLRIRIGGDP FT PADVEPLKVRLRERAQPYRSGTRKYPPAQQKFLREIVSELERHGLVRRNNT FT RCSALPVKKPQTDEFRCTVDCRPTNKCTVPLAGATPNLTSATQSVMGAYGF FT GLFDIFKGFWQLPLHRDSQELFSFVTEDGVFTPTRVPQGASDSAMHFQLQM FT QLCFQAMMYRSILVWIDDLLLFARGAEEYLTNLRSFFKVVHERRLKLNAKK FT CALFDTKVVWCGKVIDGTGVKHSLDRLAALTSMALPPTAAALQQFLCAANW FT LRESMVDYARVVGPLQSKLEALMAQRGRRKAQLTGVELTWPADDKAAFRAV FT IDLLTTSAKLFFPDPDAVVCMFSDASLGGLAVIVSQVRNWIAGLPVTEQAH FT DLLACRGGLFTGAQGNWSICFALPSYLNLIQTHYSLTRNPNAHRGEGSIPY FT CSGLW" FT CDS 2751..4742 FT /product="Gypsy-53_PIT-I_2p" FT /translation="MHIVEKEAYPIVRACGDLAYLLEREKGVQIYCDHANL FT IHIFSPDKTVKPHLRGKLQRWALHIVGVRYTIEHIKGEDNVWADLISRWGQ FT ASAVPGNLPHAVKRVVACVVGKNEEDYANATADDVTDGETRETVKDKPCMI FT KPFDLSAAYWHVPMQDGAVGLAKRVTARRTQPISLLRSLQDGRFVWPSEGA FT IRDQQRRHRSSAPAAADEDGLIRVDEKLWVPKQARELLQRLLVVAHCGPQG FT HRGSDVMQAALAERFEIANAGALIDRFLRECLLCKHVKGGKLLMRRWGPTS FT TASKRNKCLHMDYLQLGESYGASRYVLVLKDELTHYCELIAADAANSATAV FT QAVLDWYKRFGLPEAWVSDNGSHFKASVMEELAGRLKAIQKFVPVYTPWIN FT GTVERVNRDILQVLRVMLLELHLDTRNWVHLLPVIQANLNHSAVASLGGHA FT PVELFTGLPAPSLLDTVAIPSSGSYRMLPVDLTKVAPQLAKLREHLYELHG FT DVVDRKERRRLREIARGKGQECNFNEGDFVLWSRVDTRMRGGKVLVRWVGP FT FRVVRALSHSFMIAHLLTGDEYEVHGSRLKHYCDPELGSIAEIREHVAVQG FT IVLGVRDIIGHRYDTTAKEWQLHVAWRGLKDSENSWEPFLAMYADIPVLVT FT TYVESVNTPELTAML" XX SQ Sequence 4902 BP; 1115 A; 1167 C; 1445 G; 1175 T; 0 other; taaagtatac tttggctttc aaggactgac gatggcgttc aacagggagg ttgaccaaga 60 tggagacgtc gcgatgcggt gtacacagcc ggtcttcgag tacatcaagc ctccgcgatt 120 gacagacctg ggacaaccag cactggtcaa atctatgcgc gatcgtcgac agtatgaaga 180 gagggtctgg gagcgatgcc tagcgacggg tgaagtgcac gagaacgtgc tcgttagtat 240 caagaactcc atggaaccaa ggatcctcga acacctggcg cactacgaat ttcgtacaac 300 cgtggaggaa gtgacggaca ggtgtctaca ggaggacatc aagcgccgtg cgggcactct 360 gatgaatgat catgtccctg atgtgaccaa gcttttcagt gataacctga aaatggacat 420 gaaggtgtcg gatatccatg cacgcattgc acaataattc atggattttg accggctagt 480 ggataaacat ggactaggga catgggttgg tcggggacca gcgacagatg ctgcaggccg 540 tcaacgcatg aaggctcgct gcaagttact ggtctcgaac ttgttcccga cggtgttgcg 600 ggtggatatc gagcgcctca ttgccgtgac gcaccagcac gctaagcaag atgatgtggc 660 gttgtacgag ctgatcgtcg tccgagccaa gagccagcaa catttccaca ccatgcaaac 720 cgagttgaag cgtgatgatg cccccagggg aaaatctact ggcggtaaga ctggaggagg 780 gaagcaaccc agtagggctg ttggtaaggc cgtacgtacg aaagtggaat tgaaggcacc 840 tcccaacccg cctcgaatgg gatgtttgat ctgtaagggg ccccatgggg caaagtactg 900 cccgactggt tctgacgaac agaagcgaga tatccagcgc gaggtgcagg ctcgtaaggc 960 gctaagagat gaacgcgtca aggctgtacg ggtagtacgg gctggagaag gccgatgtgc 1020 gtgcattaac ggtgttttgg atgtgccgtt ctgtcccgat actggagcgg acagcaacat 1080 catttcgacg agcttcaggg tgtcggaagc acgctaaagc tgcaggcatt gaagcctgta 1140 gtgcaggtgc aagtagctgg tggcgctcgc atgtgttgtc gcgatgctgt cattttggat 1200 ctgcgtatcg aaacagcagc cgggccttgc acctcgctga tgtaccgtgt cttgtcatgg 1260 agggccatga aatcgagttt ttactgggac gcaaaactat gcaagacatt ggcttcgaca 1320 tcgacaggct atttgaccaa cttgcaagtg gtcatgtcgg tgacgcagat gaagacgatg 1380 ttaccagcga tagccttcaa gtggtttttt ggtggatggt gatgaagtct atggctactt 1440 gaacaagatg gttgatgctg ccggagctgc tggttttgcg ccagagttgt tggaggacct 1500 acgcaagctg gtgtttgagt atgccgatgt attgcgtatt cgtatagggg gtgatccacc 1560 tgcagacgta gagccattga aagtgaggct ccgagagagg gctcagccgt atcgcagcgg 1620 gacaaggaag tatccaccgg cgcagcaaaa gttcctacgg gagattgtgt cggaattgga 1680 gcgtcatgga ttggttcggc gtaacaacac caggtgctca gcattgccgg tcaagaagcc 1740 acaaaccgat gagtttcgct gcactgtaga ctgtcgaccg acgaacaaat gcaccgtgcc 1800 gttagccgga gcaacgccga atctaacctc agcgacacag agtgtgatgg gggcgtacgg 1860 tttcggcctc tttgatatct ttaaaggctt ctggcaactc ccacttcacc gtgacagcca 1920 agaacttttc agttttgtta ctgaagatgg ggtgttcaca ccgacgcggg taccgcaagg 1980 tgcaagcgat tccgcaatgc atttccagct gcaaatgcag ctctgctttc aagccatgat 2040 gtatcgcagc attctcgtat ggattgatga tctgctatta ttcgctcgtg gtgccgagga 2100 atatctaact aacctgcgat ctttctttaa ggtggttcac gaaaggcggc tgaagctgaa 2160 cgccaagaaa tgtgcgttgt tcgacaccaa ggtggtatgg tgtggcaagg tgattgacgg 2220 tacaggcgtc aagcactcac tcgatcgcct cgcagcactg acgagcatgg cgctaccgcc 2280 gactgctgca gcgctccagc agttcctatg tgcagcgaat tggctgcggg aatcaatggt 2340 ggattatgcc cgagttgttg gtccgcttca gtcgaagcta gaagcattga tggctcaacg 2400 gggtcggcgc aaggcgcagc ttactggtgt cgagctcacc tggccagcgg atgataaggc 2460 agcttttcgt gcggtgatcg atttgttgac gacttcggcc aagttgtttt tcccggaccc 2520 agatgcagtt gtgtgcatgt tcagcgatgc ttccctgggc ggtttggccg tcatcgttag 2580 ccaggtccgc aattggatcg cagggctacc ggtgacggag caagcacacg atctactcgc 2640 ttgccggggt gggcttttta ctggggctca aggtaattgg tctatctgct tcgcccttcc 2700 gagctacttg aacttgattc agacgcacta cagtctgacg aggaatccaa atgcacatcg 2760 tggagaagga agcataccct attgttcggg cctgtggtga tctcgcgtat cttcttgagc 2820 gtgagaaagg tgtgcagatt tattgcgacc atgcaaactt gattcacata ttttccccgg 2880 ataagacggt caagccacat cttcgtggca agctgcagcg gtgggcactc cacattgtgg 2940 gagtccgcta cactatcgaa catatcaaag gcgaagataa tgtttgggcc gatctgatat 3000 cgagatgggg ccaagctagt gcagttccag ggaacctacc gcatgctgtt aaacgtgtgg 3060 tggcctgcgt ggttgggaag aacgaggagg actatgctaa tgcaaccgcg gatgacgtca 3120 ctgatggcga gaccagggag acggttaagg acaagccgtg tatgattaag cccttcgatc 3180 tctcagctgc ttactggcat gtccctatgc aagacggtgc tgttggtttg gccaagagag 3240 tgacagctag acgcacacag ccgatttcgc tgctgcggtc gttgcaggac ggtagatttg 3300 tgtggccatc cgaaggtgca attcgggatc aacagcgacg ccaccgttcc agtgcaccgg 3360 cggctgcaga tgaagacggt ctcattcgag tcgacgaaaa actctgggtc cccaagcagg 3420 cccgcgagct gttacaacgt ttgttggttg tggctcactg tggacctcag ggccacaggg 3480 gtagcgacgt tatgcaagcc gcacttgccg aacgctttga aattgctaat gcgggggcgt 3540 tgattgaccg tttcctgaga gagtgtctgt tgtgcaagca tgtgaaaggc gggaaacttc 3600 tgatgcgccg ttgggggcct acatctacgg caagtaagcg caacaagtgt cttcacatgg 3660 actatctaca gctaggcgaa tcctacggtg caagccgata cgtactcgta ctcaaggatg 3720 agcttacgca ctattgcgag ttgatcgctg ctgatgcggc aaacagtgct acagcagtcc 3780 aggctgtgtt ggactggtac aagcgattcg ggttacctga ggcctgggta tctgataatg 3840 gatcgcactt caaggcgtca gtgatggaag aacttgctgg tcgtttgaag gccatacaga 3900 agtttgttcc ggtctacacg ccgtggatca acggtaccgt tgagcgtgta aaccgcgaca 3960 ttcttcaggt tttacgcgtc atgcttctgg agctacatct agacacgcgc aattgggtcc 4020 atcttttgcc ggtgatccag gcaaatctta atcactcggc ggtggcttca ttgggcggac 4080 atgctcccgt tgagctgttc acgggcctgc cagcaccttc tctgctggat actgttgcaa 4140 ttccttcgag tgggtcctac aggatgctac cagtcgattt aactaaggtt gctccacaac 4200 ttgccaagct gagagagcac ctctacgagc ttcatggtga cgtcgttgac cgtaaggagc 4260 gtcgtcggtt gcgcgagatc gcgcgaggga aaggccaaga gtgcaacttc aacgagggcg 4320 atttcgtgtt gtggtccagg gtggacactc gcatgcgggg tggtaaagtg ttagttcgtt 4380 gggtaggccc gttccgcgtt gtccgtgctc tctcgcattc attcatgatc gcccacctgc 4440 tcacgggtga tgagtacgag gtacatggct cacgcctcaa gcattactgc gacccggaac 4500 taggcagtat cgctgaaatt cgcgagcacg ttgccgtgca gggcattgtg ctaggcgtgc 4560 gggacatcat tggccaccgt tatgacacga ctgcgaagga atggcagctt cacgttgcct 4620 ggcgcggcct taaggactca gagaattcgt gggagccatt tttggcaatg tatgcagaca 4680 ttccagtcct ggtgacaacg tatgttgaat cggtgaacac tcctgagttg acagcgatgc 4740 tgtaaccatc aatttcaacc tggccctgtc acatgtcaca tttttcacaa gtcatggcga 4800 tatggctact ttacgttttc cagattttcc agttttctga cattttttca agttttccag 4860 ttttttcatt taccgcggtc atcttggggg cagtgtagtg ca 4902 // ID Gypsy-14_PIT-LTR repbase; DNA; PLN; 1044 BP. XX AC AATU01003137; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PIT_; KW Gypsy-14_PIT-I; Gypsy-14_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1044 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003137; Positions 21182 22225. XX SQ Sequence 1044 BP; 291 A; 200 C; 381 G; 172 T; 0 other; tgtaataggg cattgacggt ggttgccgag gagtcaagca gtagagagca cgtgggaggt 60 attgggtacg tcagtgaagt gagcggttat atggcgtcag ttggtgtggc gagcggagac 120 cgcacaaatg cgatcttgta tccagaagcg actcgtgaga gttgcgagcc aatcaggagt 180 gaccaaagat cgcaacacga acccaacgtg cagaggaaaa gcgacgtgaa gacggagagc 240 ggtgagactt cgagatttgc gcaggagagc agtagcagat tgaatctcac ttcgagattt 300 gcgcagtcga gcacagaggc gaagtaactg cgagtacgga gaagtgcgag gtagtgagta 360 gggtgcacga agcggtcaga ggaccaacac gagaagagag aaggagaaga gagagaagag 420 gtgcgattgg acggacgatc agtcgtcagt gcattggtgg acgcgtgggg caacgacagc 480 gacgggcgac gagaccagga ggagaggacc ctccaagtta ctgtgtggct gcgagccgta 540 gggtaggcgc cagaggcgta atccaagtgg ctttagtaag cgagggttag tgggacccga 600 atcgtcggtg ctttgcgtgg acagagttgt gctgggggtg gattagaagg acaggagcac 660 gaagagtggg cgctcgataa gttacggacg cgtggcgagt cggaagcgta agagtgagac 720 tgagtagcgg tgtattccgg gaaagaaggc ccagagaaga accgtggcaa taggtcgaga 780 gttgagaggg tgagtcaggt gagtgatagc acgccaccga gagcgagttc gcggctgcta 840 gtcacaacag gtcagagtca caggagttga ggagagaagt aaataaaata gggacgagag 900 tcccggcacc tttgcgaggg gcctacagag tgagtgagtt gcattgagac gggctaccca 960 acaaaccgaa ctactggtag tccaccgcag gaagcacaga caatatacga tccgccagca 1020 acggggcgta agcgggttgt caca 1044 // ID Gypsy-22_PIT-LTR repbase; DNA; PLN; 426 BP. XX AC AATU01001592; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PIT_; KW Gypsy-22_PIT-I; Gypsy-22_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-426 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001592; Positions 79433 79858. XX SQ Sequence 426 BP; 147 A; 117 C; 90 G; 72 T; 0 other; tgtcataccc gcctccggct tgctgagcaa gcatgccaga gagctcgggt gcaaaggctc 60 tggcttgctt gctcgcaacc agaggcctca cgtcgctgct accgttgcct tcaaggccaa 120 cagcagcagt gacgatgcat ttagtagcaa tgaacatgca tataagagaa aagaaaagta 180 aaagaaacag agaaaagaag aaaacacaaa gacacgaggg tagggataca aaaacaagta 240 gacaagaagg aagcccctgt gctcgcctag gagcacatga aggcatgcat ttggaagtaa 300 gaactcactc ttaaatatac caactacccc caagcctcga gaccaacacc tacaactaca 360 agacctacaa tctccaagtg acctacactc tcctgcgacc aacactctac agccccagtc 420 attaca 426 // ID Copia-8_PIT-LTR repbase; DNA; PLN; 166 BP. XX AC AATU01002990; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PIT_; KW Copia-8_PIT-I; Copia-8_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-166 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002990; Positions 73597 73432. XX SQ Sequence 166 BP; 43 A; 40 C; 41 G; 42 T; 0 other; tgttgaaatt caatgaatct ggcgccagga ttcaggagat gcgccgacca gctggaggtc 60 tcggatggcg tgcgagggta agtataggaa ggataaatga cggaacggtc actcactaat 120 ctcactttcc attctgcttc ctactacgca cctttacctt tcaaca 166 // ID Gypsy-1_HAE-I repbase; DNA; PLN; 6964 BP. XX AC ABWE01000216; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HAE_; KW Gypsy-1_HAE-LTR; Gypsy-1_HAE-I. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-6964 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000216; Positions 46686 53649. XX CC Positions [4171-4650] - Integrase core CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 1550..3436 FT /product="Gypsy-1_HAE-I_1p" FT /translation="MKHKPWIDWLSRTVGASHKPLVERAFAGHVPSLSRDG FT FVHEHHIPRLESLFAGSAEAMGEQGCRGSTDTLECVEAGAASAREVTTVGG FT DGRGSAVVTIAQEVATVGGGANGSIVVTSAQGAGVFGRHIHEVVVFPPSSE FT DATVGGCASGSAAVTIAQEDATVGDCASRGAVVTPSQDVVVVDRSSLNVIA FT VEPLTKLEELYGIDELSHREFLATLKEGALEDVVLIRQEATSVELNSSSVM FT DPEVLDDENKSYRQQRYGSAILKNPSDPFYPLLKEFADVVSEDPPSVLPLD FT SGLRHEIDLEPGTKYCTTRQRPLPKEQVDAIDAFFAANHAAGMVRESKSPY FT TSPTFYVRKPNRKWRMVHAFNKLNVATVLASTPIPRKDVLQNSMAGCSIFS FT ALDMVDGYYQLLMRESDIPLKAVSTLSEMLWEWLVIPQRLSSAPATFNRLV FT TQLFRPMRHFAQTYFDDILVHSKAEGDKTDVEVHIEHLRSVLMCMRENRLF FT ANINKCLFGAEEIPLLGCFLGKDGIRADPKKVRAIAQWPTPKSQKDLRKWL FT GLANHLHKYSENYAEMARPLKNLLKNDVIWSWSGEAQQTFEAIKMSLQSAP FT ILALPDEGRPFSVVCDASDFAIGCALLQLDA" XX SQ Sequence 6964 BP; 1482 A; 1679 C; 2088 G; 1715 T; 0 other; caccctggta ggacttgtag tcaatcccgc gaccaaggat tgatacaatc cgcaagtcgt 60 ataacatgga tgacttggaa agtaagatgc ctttgaggca tgactatact catctttcgg 120 atgcccattg ggctacgttg gagcgaatgg ttagcctctt aggcagggag actttcgtcg 180 ggttctcctc cctaaccgcc gagcaacagc gtgctcggat ggagcgactt gagagctatg 240 agtcctcact catcgctcat gtgagcaaga cggcgcaaga ggcggctcgt gccgtcttca 300 gagccgaggc gcagagcgct gctccgacgc aggtgtcgta tacgccacgt ccagagtcct 360 cgaaagctgt gaaagttagt gtccctacgt ttgatgggaa ggaagcggac agcttggtct 420 tttggatcag ggagatcgag atcgcgctga gcgcacgcta gattcacgac ttgaggtccc 480 aagtggcctt ttccctttca aacctgggag gtcgggcaag ggcgtgggct atggccaaag 540 agacagccac tccgggatac tttgtctcgt gggagttcat ggcgcaggag atgcgtcaca 600 catttctcct ggccaatgtg gcgtaccgtc atcggtcttc gttcttgcgg agagcaaggc 660 aagaggtcct tgcaggacta tgtcatggag cttcagaact tggaggctgc catggcaggg 720 gctccgttgt cggaagaggt gaaggtcacc gtgtttatgg atggtgtccg ggtcggaccc 780 gtccgcacgg agctctttcg tcgtcaagcg accacgttca atgaagcggt acatatcgct 840 ttgttgtaaa gtcactgcat gcggtcggcc cagggccacg tcggggctac ggaggcctcg 900 gatggttcta cccccatgga tttatcgtcg gctgagaaga ctcgcccacg ttaaggtgcg 960 tgaagggccg gtggccgctg ttttgggtgc aatgcggtcg ggcattaccg cagagattgt 1020 cttaagaacc cgtggaaggt tgtccacggc aagccagctt cagcgaagca ctctcttaac 1080 gccgtaagcg ttgtagattc gggaaacgtc gattcccagt aggtgcggga cgccctactg 1140 ggaagtcaat ggcttccaag acgggagaga atttaccccc tcctcttcct ggagaagatg 1200 tcccggggac aacactattg tgtttgtctg tggccgcggt gcggtcaaac ttagtggtgg 1260 ttactgctag ggtgaatggg tacgatgacc ccatgacggt cttgatagac tcaggcgcgt 1320 catataactt agcgacgaag gctagtgtgt cgaagaattg ggcgctgtat accaaggctg 1380 tggaagactc caagagtaac agcaaggtgt cagttcgctt agcgacagga tcgattgtat 1440 cgaatcgcaa ggttttgata cctttggtaa tcaagtttga tgagtttgat tcagaagaac 1500 cgttcatcgt cttggacatg gacgatcgat acgatcttat ctttggttta tgaagcataa 1560 gccatggatc gactggctta gtcgcaccgt gggtgctagt cacaaacccc ttgtggaaag 1620 agctttcgcg ggtcatgtcc cctccttgtc tcgcgatgga tttgtgcacg aacatcacat 1680 cccacgtttg gagagcctct ttgccggttc ggcagaggca atgggtgagc aaggttgtcg 1740 cggatcgact gataccttgg aatgcgttga ggctggagca gcctccgcac gagaagtcac 1800 aaccgtgggt ggcgatggaa ggggtagtgc tgtggtcact atcgctcagg aagtcgcaac 1860 cgtgggtggc ggtgcaaatg gaagtattgt ggttacttcg gctcaaggag caggtgtctt 1920 tggacgacat atacatgaag tagttgtgtt tcctccttca tcggaagacg caaccgtggg 1980 tggttgtgcg agtggtagtg ctgcggtcac tatcgcccag gaagacgcaa ccgtgggtga 2040 ttgtgcaagt aggggtgctg tggtcactcc ttcacaggat gtcgtggtcg tagatcgaag 2100 cagcttgaat gtaattgcgg tggaaccgct taccaagctc gaagagttgt acgggattga 2160 cgaattgtcc catcgggagt tcctagcgac cctcaaggaa ggtgcgttag aagatgtggt 2220 gctcatacgt caggaagcga cgtcagtgga gctgaacagt tcttcggtca tggacccaga 2280 agtgttggat gatgagaaca agtcttatcg tcagcaaagg tatggctcgg ccatcttgaa 2340 gaatccatcg gatccgtttt atccgctgct aaaggagttt gcggatgtgg tctcggaaga 2400 tcctccgtca gtgttgcccc tggatagcgg tttacggcat gagattgacc tggaaccggg 2460 tactaagtac tgtactacgc gtcaaaggcc gctgcctaag gagcaagtgg acgcaataga 2520 tgcgttcttt gcggcaaatc atgctgcggg catggttcga gaatcgaaat cgccatatac 2580 gtccccaacg ttctatgtgc ggaaacccaa tcggaaatgg cgcatggtgc atgcttttaa 2640 caagctgaat gtggctacag ttctggcttc gacgccaatt ccccgcaaag atgtgttgca 2700 aaacagtatg gcggggtgca gcatctttag cgcgctcgac atggtcgacg gctattacca 2760 gctgctgatg agggaatcgg atattcccct taaggcagtg agtactctca gtgagatgtt 2820 gtgggaatgg ttggtcatac cccaaaggct ttccagcgcg ccagccacgt tcaatcggct 2880 ggttacccaa ctgtttcggc cgatgcgaca cttcgcgcag acgtattttg atgacatctt 2940 ggtccacagc aaggctgaag gggacaagac ggatgttgag gtgcatattg agcaccttcg 3000 gtcagtgttg atgtgcatgc gagagaatcg tctctttgcg aacatcaaca agtgcctctt 3060 tggggcggaa gagattcccc ttttgggatg tttccttggg aaggatggaa ttcgggcgga 3120 tccaaagaag gtacgggcga ttgcgcagtg gccgacgccc aagtcccaga aggatctgcg 3180 caagtggctg ggacttgcaa atcatttgca caaatacagc gagaattatg ctgagatggc 3240 caggccattg aaaaacttgc tgaagaatga cgtgatatgg tcatggtcgg gagaggccca 3300 acagactttt gaagccatca agatgagcct acaatcagca ccaattttgg cgttaccgga 3360 cgagggtcgt ccgtttagtg tggtgtgtga tgcgtctgat tttgccattg gctgtgcgtt 3420 gcttcagctg gatgcctagg gcaacgaacg tgtgattttg ttccagtcgc ggcagctcaa 3480 ggccaccgag aagaattacc cagtgcatga taaggaactt tttgagatga agtatgcact 3540 ggtcaagttt cgggttcatc tgctaggcag taaaccgttc gttgtctaca cagaccatgc 3600 ctcgttgagg acggcgacgc agtcgccaca cttttcgcag cgcatggggc gttggttgtc 3660 attctttgcg gaatacaact tcacggtggc ttataagcca cggaagtaaa atgtgctagc 3720 tgacgcgttg tcaaggcgtc ctgattatga gctggcacgt gtggtacacc ttgaatcgac 3780 actgtttgag ctcatacgcg gggcgtattc tcaagatccg gacttttgag gtgttattga 3840 ggcgctgggc acctcatcga acgtcgtcaa gctgacgaaa cgccagcagg cacatctcca 3900 tcggtatagc ctgtccgacg gacttctgct ctacagtgtg aatcctgggg atgaaaagcg 3960 ggtggtcgtt ccaaacgacg aagatttacg ccaccggatc ctctacgagg cacacgatac 4020 gcctggcagt ggtaacttgg ggcgcgagaa aacgtatacg tctgtggcac gtgaatttgg 4080 tggccccata tgtacaaatg ggtgtggtct tacgtaaaga cttgtgagac ttgtcagcgg 4140 gtgaagcccc taccgtcctc agcagcgccg tcgcagagtt tgccagtccc ggaggactgt 4200 tggcgctcag tgagcatgga cttcatcttt gatataccgg cagataggca tggccatact 4260 gggattatgg ttttcgtgtg ccgccttagc aagatggtgc gattagtggc ggtttgccga 4320 agtgttacgg cgccgcaggc ggcccatccc ttcattgatc atgtgtttcg acattatgga 4380 ctcccggagt cttttgtgag tgatcgggat cctcgtttcg tttcagcctt ctggcagcat 4440 ctctttcggc tgatcgggac tcgactggat atgtcgacag cgaatcatcc ggagacggat 4500 ggtcagaccg aacgggtcaa ccgtgttttg gaagatgtgc ttcgcagtat ttgtgtggat 4560 gagccacctc agtggagcgc tcaactagcg caagtggaat tcgcgttgaa taatgcagtg 4620 cactcttcta cgggttttcc ccgttctatg tgaatgggtt gcggcatccg cgtactcccc 4680 tatcattgcc gagggcttct gatttggagg gggagaggct gtcgctgatg acctaagagg 4740 tctaagtggt gttcgaccat cggtcgagcg tgattttctt acgtctattg agactggtga 4800 agccattcgg ctccgcgtaa gggaagccat ggctgccgct caggaccttc aaaaggaaaa 4860 cagtgaccgc catgggcgtc ggaacacaca ggtgtttaag attggcgatt cggtgttgct 4920 aaatgctcgc aatttaccta tacacgcagt gtcggctgta gggattacaa agcttcgtcc 4980 gcgcttcgtg ggtccgttca tggtcattgg tctgcatggc aatgcttaca ctttgaactt 5040 tccatcggct atggcaacgc atccaacgtt ctacgttggg atacttaagg cctaccttga 5100 tttctctgct gggattgaaa cagacgccac atgtggttca tcatctggcg aaggtcgtca 5160 gttaatggct ccattggagc gcctcttgga acctaaggag aaggtttgcc atggaagata 5220 agcaggatac cccaagggat acgcagattg tcctgaagcg ggtgcaggaa ccgggtttga 5280 tctctccaag cgtcgctcaa ggctctttac cctgtccacc agggtaatcg tccactgaca 5340 ttgatcatcc agcgctttct gcatcttcac agcaaacgac tcgactcgcc cgttcagttg 5400 ttccaggcga tgccgttggc ggtcttggaa tcctcacact gtcgaagacg acaatcatcc 5460 gaatggtcat ggttgtcgag aacctggacg cggtccttca gctcagacag ctcgtgtcgg 5520 cacgttgcca aacgatcttg gcaatgattc aaggaactct gaagggagtg tgactcccca 5580 gaccgacgcg aagaactgtg gcggtatgat ccgtcccccc caaccctcgc ttggtcgcga 5640 tggggaacgg taattccttg tggaaaggat tgtggggcgc cgccggaagg ctagtcgcca 5700 ggagttctgg gtaaagtggc gtggctacct gatggcccgt aatatgtggg agccggaaga 5760 ccggctcgtg gaggactgcg cggaccacgt gggcacttat aagcgtgacc actcaattgg 5820 tccgcgctaa ccgtgcctag tagggttttg ggctctaccg gatgagttgt ccttcccttt 5880 tggatcttgc gcatgacctc tttgagcatt acactgggcg tgggactgtc tcggtcgata 5940 tggcgacaga catcccagcg tcggtcagca accgccttcg ccatgtgaaa tcgcaagcgc 6000 cggagcgcta accagtcaag ccgatacggc gaagtcatga aggcgggtat gggatacccc 6060 atggcagtga gccactgcac aaattcatct tcgtatgctt gacgacaggc actgttgacg 6120 acaatgggac actcctcgac ttgctcgaca cctcttcagg taaacgagct cgtctcaagt 6180 attgggagta gtcgtccaac gaccaaacct tgacggctag cagctgatct ttcgttcggg 6240 gaacgtaagg gtcatgggcc cgtttgtttc tcctctggtg gtccaaggga cgtggttcgg 6300 gtgcgtgggc atcagtctgg gcaggcttgc taggtcttgt gaaggcatcg acatgaatct 6360 cttccgtgtg ggacgcactc gattcgcaaa ctggatttac agcgagtatc gagtcgacaa 6420 tgacgcgggg agcttcgtct cttgctttcg cacatgccgc aacagtccgt ggcgtgagtg 6480 gactttctgg atgaagaaca cgctgggcat cagtgaattt gggcgaagac ggggggggtg 6540 tccgaatcgt aggcacactt caacccttct gcacacattc ttgccgcttg cggcgtcgag 6600 aagcagttcg ttgggctgac gcagcacgtg gcttctcgtt tgggtcaagc gttagcagtc 6660 taccgcgtga agccctgcgt agcaccttgt cgaggcgtct ttttcccccg tggctgtcgt 6720 tggccgtgct tggtgagtca gagatctacc ctctcaatga aggtgttgcc tgctcgccct 6780 gtgggctctc tcggagtgtc atcagcgcag aggatggcgt gggacttggt ggcccagtgg 6840 gcatcttcgt ctccatcgta gttgtgctgt gagggtgcgc ggctgttagg cagaccctgt 6900 ggtgtcgctt ccctcttggg cttccctccc tgttaacggt gtcttccggt agggtgtagg 6960 aggg 6964 // ID Gypsy10-I_VC repbase; DNA; PLN; 5845 BP. XX AC scaffold_37; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10-VC; KW Gypsy10-LTR_VC; Gypsy10-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5845 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 119-119 (2008). XX DR Genome; scaffold_37; Positions 1344469 1350313. XX CC Positions [4690-5172] - Integrase core CC 'AGACG' target site duplication CC LTRs are 98% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2131..5841 FT /product="Gypsy10-I_VC_1p" FT /translation="MRRVLMFPAKSVLCNGLSLEGKTVELPGIPYPAELWY FT DAPSPCLSVAREPFASSLCAVASGSVDTRVALPLVSLRTGGQTFSALVDTG FT ATHDFISESLVQRLHLPVHSSDWSHVSLADGGRQAIVGQVSFRVAVGSLYL FT TVSPYVLPSLTDAAPFILGSDTLRKHSASLDFQNNILRLSKGTVRYSIPWR FT ASSNDSGDSGATSSAPLVNFAAAAMCAHATPESIGRKAAMRLIRKGAHALL FT VRPSVSLNATSVIPPTQDPEVSALLEEYADVFREIPGIPPVRPVDHTIPLV FT PDAQPVARPMYRLSPLELDEVKRQVTELLAKGMIRPSTSPFSAPILFVGKK FT DGSLRMCIDYRGLNSMTTKNRYPLPRVDDLLDKLRGSAYFSSIDLQQGYNQ FT IRIAESDIPKTAFRTPFGHFEYTVLSFGLVNAPATFQAVIDRMFRPYIDKF FT VVCYLDDILVYSKTKEEHLQHLRLVLDVLRREQLYAKQSKCHWAKSEVEYL FT GHVVSVDGVRMDPKKTAAVRDWPVPTSLLELRKFLGLTNYFRKFIANYSSL FT AAPLTSLTRKGAFSSADVWTAECQASFEAIKRAVSDDIVLRFPDYSQPFRV FT ELISDASLHGTGAVLLQNGHPVVFSSKKFSAAERGYTTGEQELLAVVHTLR FT EWRCCLEGRPFVVKTDHKPLTFLQGVPTLNRRQARWLEYMQRFNFTWEHVS FT GSVNVADALSRHPSLHSVVLSVVTRRQSAAADLTISAFAKRIVDGYKTDPW FT FNDPNNVEQLTRVQGLWVRTDGDRRQTVVPNDDLLRRDILYRVHQDPLSGH FT VGSTRLIELLRRNFWWPRMARDAASFVEQCDVCQRQKPKSGKQSGLLQPLP FT IPDSPWESVSLDYVVALPLSEGGYDAVLVIVDRLNKMVHLVPTTTTVTAEQ FT TARLFFDNVVRLHGVPKQIISDRGPQFGAKFWGALGTLANFRVSLSTAYHP FT QTDGQTERMNRTLGDMLRTYAGNNPRVWDTYLSAAEFAMNNAVNRSTGQSP FT FFLNYGFHPATPVSRELDVPVPAAKSFIKSYVARIAEAKQCLEKAITTNYY FT NRGRAEVTFKEGDLVLLSTKNLRQLAVGPRKLLPRWVGPYPVKRMVGKAAA FT ELVLPSDMRIHPTFHVTLLRPYKAPADALDSSTVRDSSSALSSPAGPPPVQ FT WLKSDPLYSVERILDYRARRLGRRRKGLVHEYLVKWTGYSNEHNSWEPEKN FT FTDLRPELQAVKARATKAARMLRPEGG" XX SQ Sequence 5845 BP; 1085 A; 1579 C; 1554 G; 1627 T; 0 other; agtggtatcg agacgttcgg tctcgacctg ctcttccgcg ccaatctcga ttgttagtaa 60 aggtcatagg cttacagtgt tggagcgctc gtggcggctc ttcagggtaa gtgaaagatc 120 gtaatcatct gtattgtttt gtccttggtt gcctcgctca ttgttgttgc agaggttaga 180 acgggtgttc tggacccgac tgaggtagag ccgctgcttc aagctcttcc cctatccgcg 240 gcagtgactg catcattgct gtataagggt aggcccttct tagttagcta aaatgcttag 300 caccgccccg tttaatttgg gcggcgacca taatggtgta gacatggcgt cgggcgcacc 360 tgatgctcgt tccactttgc ctgcctacgc tgttgcggga cttgttcccg atcctggtgc 420 acctagtacg tctagaggtt cgatcggcgc tactgaggtg ccagtttccg ttcgccaacc 480 tgatgcgtga acaccattct caacttttgc cgcagcacct ttgttgcagt tgcccactgg 540 ggctgccgag aatgttcggt taaggccact tggtcctact ggtgacgaac gtctccactc 600 cttgccttct ttggcccctt ttgctctgcg ccatccgctt aacactccca tgaatcgtcc 660 ggatgttcca atggtgatac cagaaacccc gacgacagat gcggaccacc gtgctgcggc 720 tgcgcgtgcg ttagcggtgg aagctgctgc tgctgctgct gcggtagtca cagccgagcc 780 agagcctttg cctgcggttc ggccaatttc ttcggccgac ctcccgcggg ttagtttacc 840 gactcctgtt ttgcaactag atgccaagct tgatgtgaag cagactgctg ctcgagtaaa 900 ggtgtttatt cgcaacgcgt ctttgttttt cgaaatcgtg ccctggggta gggaccatcg 960 gtcatgctgc ctgtttttgt cgcaagcgct ccgtggcgtt gcaaaaacgt ggtatgacga 1020 gtggtctcta tcgcagcgcg agcttactgc tcagcttgtt ctggataacc tgcgcacgcg 1080 ttttgctcct caggttatct ctgtagaaca agaagcacga agtaggcttt ctgacaaatc 1140 ttttgcgatg cacgctggtg aaagtgtacc agcttacctt tcgcgtcttg aggccgtttt 1200 ccaagacata cccacgatca ctcctagtga gcgtatgttt tggtatttcg aaggcctttc 1260 ttcttccctg cagccccatt gcgccacaga cgtctatgga aagccgtttg cctcttacga 1320 cgccctggta cagcatgcct tgggccagga agtgcgagcc ctgtctgaac gaaaagttcg 1380 tcctgctctt cgttcgaatt ccgttgcttt gcaggaattc gacggggacc agcccccgtt 1440 caagagggcg cgcgtggact ccggccctcg tccagctgcg gctgttgcgg gtacctcctg 1500 gcagccggga cgcggaagtg ttcctgggtg aagtagtcgc gggggcagaa cgggtccgcg 1560 tggtgggcgc ggtgacaggg ttcgcggcac tgaccaccct agcgaatccg ccggtggaga 1620 gcccgtcgtt ccgttgtcta aagcttgcga gttgaccaag tgggtcaacc agtttggtcg 1680 taagttgacg cacggggacg tgggaattct ccgacggcgc atgggcggta aggccatctc 1740 aagaggttgc gtgaagcggg gctgtactag gaatttgctc agggcggtat tgagggatat 1800 tccctgagtt tccttttgcg gggattcgtt ctttggtccg cgcggttaga cccgctacgt 1860 tggcagagtt tgagacgccg tttttctttc gacaccgttg ctgtcaaacc gggctttgac 1920 tcggaatgta acataacggt tcctcgtggt cgctctctct gctcggtcga cgttggtggt 1980 catactgtgc tttttgtccc tgcatccctc actcaattgc atgttttgct tcggcactac 2040 cttgcatgca agcaccgccg tcctgatacc gcggccggca ttttgctacc ttcacatatc 2100 tctcggcggg cttcaacgtt gctagcaggt atgcgccgag tgcttatgtt tcctgcgaag 2160 tccgtccttt gcaacggcct ttcgcttgag ggtaaaacag tagagcttcc tggtattccg 2220 tatcctgctg agttgtggta cgatgcacct tcaccttgtc tctctgttgc ccgggagccc 2280 tttgcttcct ctctttgcgc agttgcctcc ggttctgtgg acacacgagt tgctttgcct 2340 ctggtgtctc tgcggactgg tggccaaacg ttttcggcat tggtggacac aggcgctact 2400 cacgacttta ttagtgagtc ccttgttcaa cggctacacc tcccggtcca ctcttcggac 2460 tggtcccacg tttcgctcgc tgatggaggt aggcaagcta tcgtgggtca ggtgtcgttt 2520 cgcgtggcag tcgggtcttt gtacctaacc gtctcaccat acgttttgcc gtccttgact 2580 gatgctgctc cttttattct ggggtctgat actttgcgta agcactctgc atccctggat 2640 tttcagaaca atattttgcg tttgtcaaag ggtactgttc ggtactcaat tccttggcgc 2700 gcgtcttcta atgattcagg tgacagtggt gctacctcgt cggcgcccct tgttaatttt 2760 gcggctgcgg ccatgtgtgc gcacgccacc cctgagtcta ttggtcgtaa ggctgctatg 2820 cgtcttattc gcaagggggc acatgctttg ctggttcgtc cttcagttag ccttaacgcc 2880 acttctgtga ttcctcccac tcaggaccct gaagtttccg cactgcttga ggaatacgct 2940 gatgttttcc gggagatccc gggtattcct ccagttcgtc cagtggatca cacaatcccg 3000 ttggtgcctg acgcccaacc cgtcgcacgc cctatgtacc gacttagccc tcttgagctt 3060 gatgaggtca aacggcaggt tactgagctg cttgctaaag gaatgattcg tccgagtacg 3120 tctcccttct ctgccccgat cttgtttgtg ggtaagaagg acggttccct acgcatgtgc 3180 atagattacc gtggattgaa ttccatgacc actaagaatc ggtaccctct tccgcgtgta 3240 gacgatttgc tcgataagct tcgcgggtct gcttacttta gctctataga tctgcagcag 3300 ggatataatc agattcgcat tgctgagtct gacattccta aaaccgcttt ccgcactcct 3360 ttcggtcact ttgagtacac ggttttgagc ttcggccttg ttaacgctcc tgctactttt 3420 caagccgtaa ttgaccgtat gttcaggccg tacatcgata agtttgtcgt gtgctacctg 3480 gacgatatcc tcgtctattc caaaacgaag gaagagcacc tccaacatct tcgtttggtg 3540 ctcgacgttt tgcggcggga acagctttac gccaagcagt ccaagtgcca ctgggcgaag 3600 tccgaagttg agtatctggg tcatgtggtt tccgttgacg gggttcgcat ggaccctaag 3660 aagactgctg cggtgcgtga ctggcctgtc ccgacgtcct tgcttgagct gcgaaagttc 3720 ctagggctta ccaattactt tcgcaagttt atagccaatt actcgtctct cgccgcgccg 3780 ttgacgagtc ttacacgcaa gggtgcgttt tcttccgctg acgtctggac tgctgaatgt 3840 caggcgtctt ttgaggctat aaaacgtgcc gtttcggacg atatagtgct gcgttttccc 3900 gattactctc agcctttccg tgttgagctt atttccgacg cctcgctgca cggtacgggg 3960 gcagttttgc ttcagaacgg tcatcctgtc gtgttttcca gcaagaagtt ttctgctgcc 4020 gaacgcggct acaccacggg tgaacaagag ctactagccg ttgttcacac cttgcgtgaa 4080 tggcgctgct gtcttgaggg acgcccgttc gttgtcaaaa ctgaccacaa gcctctaacc 4140 tttctgcaag gtgttccgac tcttaaccgc cgccaggcgc ggtggttaga atatatgcag 4200 cgttttaact tcacttggga acatgtgtcc ggttccgtta acgttgctga tgctttgagt 4260 cgccaccctt ccttgcactc tgtcgtcctg tcggttgtga ctcgacgtca gtctgcggct 4320 gctgatttga cgatttctgc ttttgccaaa cgaatcgtgg acggatacaa aaccgaccct 4380 tggttcaacg atcccaataa cgtcgagcaa ttgacccgtg tccagggtct ctgggttcgc 4440 actgatggtg atcgacgtca aacggttgtc cctaatgatg atttgcttcg ccgtgatatc 4500 ctttaccgtg tgcatcagga tccactttcc ggtcatgtgg gttctactcg ccttattgag 4560 ttgctacgtc gcaacttctg gtggccacgg atggctcgtg atgctgcttc ctttgttgag 4620 cagtgtgacg tttgccaacg gcagaagccg aaatctggta agcaatcggg cttgcttcag 4680 cccttgccga ttccagactc gccttgggag agtgtgtcgc ttgactatgt cgtcgcactt 4740 cctctttccg aggggggata cgacgctgtc ctcgtcattg ttgaccgctt gaacaagatg 4800 gtacatttgg taccgaccac cacgacagtt accgcggagc aaaccgctcg actgttcttt 4860 gataacgtgg tgcgtctgca tggtgttccc aaacagatta tttctgatag aggacctcag 4920 tttggtgcca agttttgggg agcccttggc actttggcta atttccgagt aagcctttct 4980 actgcctatc atccacaaac tgacggtcag actgagcgaa tgaatcgcac tttgggtgat 5040 atgctgcgaa cttacgctgg caacaaccct cgtgtttggg acacctatct ttcggctgca 5100 gaattcgcga tgaacaacgc tgtcaatcgc tctacgggac aatctccttt cttcttaaat 5160 tacgggttcc acccagctac tcccgtctca cgtgaacttg atgttccggt cccggcagcc 5220 aaatccttta ttaagtcgta cgttgctcgt attgcagaag cgaagcagtg tctggaaaaa 5280 gccattacga ctaactatta caaccgtggc agagccgaag ttaccttcaa ggaaggcgac 5340 ttagtgcttt taagtacgaa aaatctgcgg cagttagccg tcggacctcg taaattattg 5400 ccgcggtggg tgggtcctta ccctgtgaag cgcatggttg gcaaagcagc ggccgagctt 5460 gtcctaccgt ctgatatgcg catccacccc accttccacg taacattgtt gcggccttac 5520 aaggcgccag cggatgcgtt ggattcttca actgttcgcg acagttcttc tgcactttct 5580 agtcctgcag gaccgccgcc ggttcagtgg ctgaagagcg atccacttta ctcggtcgag 5640 cgcatactgg attatcgtgc ccgccgccta ggaagacgcc gtaaggggct ggtgcacgag 5700 tacctcgtca aatggaccgg gtattccaat gaacataata gctgggagcc agagaaaaac 5760 tttaccgacc ttcgccccga acttcaagca gttaaggctc gtgccactaa agctgcgagg 5820 atgctgcgtc ctgagggggg atagt 5845 // ID Copia-17_PIT-I repbase; DNA; PLN; 5056 BP. XX AC AATU01002470; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-17_PIT_; KW Copia-17_PIT-LTR; Copia-17_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5056 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002470; Positions 53531 48476. XX CC Positions [1815-2297] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 55..1134 FT /product="Copia-17_PIT-I_1p" FT /translation="MSGPLKYTNDGVPKNWDGKDWQQYKWAMEIVFKKKKL FT TDIVNGNLTKMMLFTSEAEEEFDDHQLTIMQLIGMSLPAEIFHQIRDKSTG FT TDMWKALCVIYESRENRTTMAHRAESIRHELDMLKQSTGGDVNKHLSTMFN FT LRTELLSLNYQFDDTAMVEFMLNSLPHTYEFESLKSGVRYNCADTYITPER FT TRELIRVADSRQRVFQAKSGKRSQKSGSIEKQKADGNGQNREKPEKFKDTK FT KKVKKCFVCDSTEHLISECSQKMKNQDGARAAGSEQKKKARANVTRMGHNE FT PLGSDTEEVHASEEVTDALDALLIDARLPAENSEENEAGSNMKKRQEVMKL FT MLLLAVGTMASNMMNMK" FT CDS 1830..5024 FT /product="Copia-17_PIT-I_2p" FT /translation="MVLDSRLFLCSWMGTRFVKVHMLTSKSSEVVNQHMKE FT YVLWAERQAGRQQDGPIRVKYRVHQILTDKGGEFVNTVMDNWYGVHGIEHV FT KVGPKSSQLSLCERTHQSLVEMTKSMMHDAGFPVSLWPEALRNAVYIKNRT FT YNKGTQSIPYEMMFGIKPDLHHIRKFGSLAYVHVPVTPGRKKHHDNARLGF FT VLGYAEDTVGCKVYFPDDRTAKFVSDLRISEDVMYRDRHGADLEEDDLESL FT YFTKRSNMESSTENSTLESTMDLSEVCNSNAAPMMSEVTLEATRDLEEGED FT DTAQRVEERDEVMTELREAQQASLSSRASANWTGLEAIGDTVTEPPCVPDV FT EGVTAGLPSALTALQSEQYHNQSDDLIQSDGVNSEGSASKLTTVYGYTKPD FT MTSDNEYAVSVCGSLDVNADGSSSEVDTEELHADENLSESIVNEANLVADE FT DGDMLVDVDEKFSEDADNVTIASTCEKLVCKRQRDETNSEMGRVEICAERE FT GPKRARTGLREYHERRRPKYLDAYVVNAVENTSRVLDENERPIRASDVRIP FT RNHREAMRSKYSKYWREAELAEMSAMKRRRVLEEIAFEDVPKDAKPIKTHW FT VYSVKSDFQGFVIRFKARLVALGNYQRPGVDFIDTFSPVARMSSFRLLVSL FT AAALNLKLYGGDVDTAYLNALLGILQYVKSIDGFPCEVNGHMYVVTKALYG FT LRQSGREWNSEINQWLLTRGYQRSLTEPCLYYRIDGEDVILVLVYVDDIVV FT ATKDEKSKNIFFEDLDQEYGLKDQGLLIVYLGVEVNQTEEQITITQTKYTH FT EILEKFGYGEAHAVGNPMEVKARFVPLEEGETSDTSFPYREAVGMLMYLAT FT STRPDLAFALSRLSRFVANPSSKHVGALKRVLRYLTGTVNYGITYDRQEIK FT SKAIVLEGHCDSDWANDPETRKSTTGFVFTLAGGAISWMSRRQSIVALSTA FT EAEYVAACETAMEAIAESNILQEILPHHTVELRIGIDNQAAHVLATNPTYS FT RRTRHIELRWHYVREQVERGVLNLHKIKGDENPADTFTKALDKLRLKNLIA FT SVGIGDAK" XX SQ Sequence 5056 BP; 1435 A; 1001 C; 1425 G; 1195 T; 0 other; agagggttct gagcccaaaa ggctttcgga ttttgttcac taacgtgatc taagatgtca 60 ggaccattaa agtacacgaa cgacggtgta ccaaagaact gggatgggaa ggattggcag 120 cagtacaaat gggcgatgga gatagtcttc aagaagaaga aactcacgga tatcgtgaat 180 gggaatctca cgaagatgat gctctttacg tcggaggctg aggaagagtt tgatgatcat 240 cagttgacca tcatgcagct catcgggatg tcactgccag cagaaatctt ccaccagatt 300 cgcgacaaat ccaccggaac cgacatgtgg aaggcgctct gcgtaatcta tgagagccgg 360 gagaaccgaa ctactatggc tcatagagct gagagcatta gacacgagct tgatatgctc 420 aagcagtcta cgggcggaga cgtcaacaag cacctgagta cgatgttcaa cttgcggacg 480 gagttgctgt ctctcaacta tcaattcgac gacaccgcga tggtggagtt tatgttgaac 540 agtctaccgc atacgtatga gtttgagagt ttgaagagtg gtgttcggta caattgtgct 600 gacacataca tcaccccaga gcggactcga gagcttattc gggttgctga ctctcgacag 660 agagtttttc aagctaagag cgggaaacgc agccagaaaa gcggtagtat tgagaagcag 720 aaggccgatg gcaatggaca aaatcgtgaa aaacctgaga agtttaaaga cacaaagaag 780 aaggtgaaaa agtgctttgt ttgcgacagt actgaacacc ttatttcgga gtgttcgcaa 840 aagatgaaga accaagacgg ggccagagct gctggaagcg agcagaagaa gaaggcacgt 900 gcaaatgtga ctcgtatggg ccacaacgag ccattgggct cagatacaga agaagtacat 960 gcatcagaag aagtgacgga tgctttggac gctctactga tcgacgccag actgccggcg 1020 gagaacagcg aagagaatga agcgggttca aacatgaaga agaggcaaga ggtaatgaag 1080 ctgatgctac tgttagctgt tggtacgatg gcctcgaaca tgatgaacat gaagtagaca 1140 caagtagtgg gtggtggtac ttcgatacgg ctgctaatgt gcacgtgacg ggaaacccgt 1200 ggtattacgt ggcgtttaca ccggatctaa atcaatccca gcatgtactt ggggttacgc 1260 ctgcgctggc ttctcgagtg gctggagtag gaactgtgca gctaataact gaagttgaag 1320 gcgagcgaaa ggcagtgtac ctaagtgacg tcttctacat tcctggtgct acacatggcc 1380 tattgtcagt cggattagct acggaacaag gttttgactt tgattaccat ggacaattga 1440 ggtgcttttg cgtgaagatg aacacgacga tactgtaatt gttgcaacac cggaggatgg 1500 aacttgggga tttcaagtga gccatccatc cagaaatgga tttattagtc cacaggatcg 1560 gccgttgtgc aatttcacag ctgcggaagg agtggcttct ttgaaacttt ggcatgagag 1620 ataagggcat gtgtgtccgc aatacttgaa gacgatggtc gacaagaacc tcgttcgtgg 1680 catgatgcta aggcagagag agctaggagc gtgtgacgcc tgtcatattg gcaagcagaa 1740 gcagcgaaga cactggaaga agctggatcg caacacaaag gctccgaacc aaatggtata 1800 cgctgactta ctgatcccta gtaaagctaa tggtactaga ttcgaggctg ttcttgtgct 1860 catggatggg tactcgcttt gtgaaagttc acatgttgac tagcaagtca agcgaggtag 1920 tgaaccagca catgaaagaa tatgtgctct gggctgaaag acaagctggt cgtcagcagg 1980 atggccctat tcgagtgaag tacagagtac accaaatctt gacggacaaa ggcggtgaat 2040 tcgttaacac agtaatggat aactggtacg gagtgcacgg catcgagcat gtgaaggtgg 2100 gtccaaagag ttcacagctg agcctttgcg agaggacgca tcaatctctc gtggagatga 2160 cgaagtcgat gatgcatgat gctggatttc ctgttagtct gtggcctgaa gcgctgcgta 2220 acgcagtgta catcaagaac agaacctaca ataagggaac tcagagcatt ccctatgaga 2280 tgatgtttgg gatcaaaccc gacctccatc acatccgcaa gtttggttca cttgcttatg 2340 tgcatgtacc agtgacacca ggtcggaaga agcaccatga taacgcgcga ctgggttttg 2400 tgctcggtta tgccgaagat accgtgggtt gtaaagtcta ctttcctgat gatcgtacag 2460 ctaaattcgt atccgatctt cgcattagtg aagatgtgat gtaccgagat cgtcatggag 2520 cagatttgga ggaagacgac ttggagtcgt tgtactttac gaagcgcagt aacatggagt 2580 cgagtactga aaactcaacg ctcgaatcta ctatggatct gagtgaagtc tgcaactcga 2640 acgctgctcc gatgatgagc gaggtcacgc tcgaagcgac cagagacctc gaggaaggcg 2700 aggacgatac tgcgcaacga gttgaagagc gagatgaggt gatgacggag cttagggagg 2760 cgcaacaagc gtcattatcg tcaagagcat ctgcaaactg gacaggactg gaagcaatcg 2820 gagacacagt gactgaacct ccgtgtgttc cggatgttga aggggtgacg gcgggtttac 2880 ctagtgctct gactgcactg cagagtgaac aataccacaa tcagagtgat gatcttatac 2940 agagtgacgg tgtgaattct gaaggatcag cgtcgaaact tacgacagtg tatggataca 3000 cgaaacctga catgacaagt gataatgagt atgctgtcag tgtgtgtggt tcattggacg 3060 ttaatgctga tgggagttca tctgaagtgg acactgaaga gctgcatgca gatgaaaacc 3120 tttctgaatc gattgtgaat gaagcgaatc ttgtagccga tgaagacgga gatatgctgg 3180 ttgacgttga tgagaaattc agtgaggatg ctgacaacgt taccattgcc agtacgtgtg 3240 agaaattggt atgcaagcgt caacgagacg aaaccaactc agaaatgggt cgtgtggaga 3300 tatgtgcgga acgtgaaggt ccgaagcgag ctcgaactgg tctacgtgag tatcacgagc 3360 gtcgtcggcc taagtatttg gatgcctatg tagtcaacgc ggtggagaat acgtcacgtg 3420 tactggatga gaatgaacgt cctatacgag caagtgatgt tcggattcca cgcaaccacc 3480 gcgaagctat gcgaagcaaa tacagtaaat attggcgcga agccgaactg gcagagatgt 3540 cggcaatgaa acgacgtaga gttctggaag agattgcgtt tgaggatgtt ccgaaggatg 3600 ctaagcctat caagacacac tgggtctata gtgtgaagtc ggattttcag gggtttgtga 3660 ttcgcttcaa agctcgacta gttgctcttg gcaattatca gagaccagga gtggatttca 3720 ttgacacgtt ctcgccggtg gcacgaatgt cttcttttag gcttctagtt tcattagctg 3780 cggctctgaa cctgaagctc tatggaggag atgttgatac ggcatatcta aatgcgttac 3840 tcggaatcct gcaatacgtg aagtcgattg acggatttcc gtgtgaagtg aatggccaca 3900 tgtatgtggt gaccaaagcg ttgtatggat tgaggcaatc tgggcgcgag tggaactctg 3960 aaattaacca gtggcttctt actcgtggct accagagatc gttgaccgag ccatgtctgt 4020 actatcgtat tgatggagaa gatgttatac ttgtccttgt gtatgtggat gatatcgtgg 4080 tagcgaccaa ggatgagaag agcaagaata ttttttttga agatttggac caagagtatg 4140 gactcaagga ccaaggacta ttgattgtat atcttggggt tgaagttaac cagacagaag 4200 agcagattac aatcactcaa acaaagtata cgcacgaaat tttggagaag tttggctacg 4260 gtgaagctca tgctgtggga aatcccatgg aagtgaaggc cagatttgtc ccgctggaag 4320 aaggcgagac aagcgacact agcttcccgt accgtgaagc tgtgggtatg ctgatgtatt 4380 tggcgacaag tacacgtcct gacctggcat ttgcactgag tcggttgagt agatttgtgg 4440 caaacccatc aagtaagcac gttggtgcat tgaaacgtgt cctacgctat cttacgggta 4500 ctgtgaacta tggaataact tacgatcgac aagagataaa gtcgaaggct atagtactcg 4560 aaggacattg tgacagtgac tgggccaatg acccagaaac tcggaagagc acgacaggat 4620 tcgtttttac actagctggt ggtgccattt catggatgtc gagacgacag tccattgtag 4680 ccttgtccac tgctgaagct gagtacgtgg ctgcatgtga gactgctatg gaggcaatcg 4740 cagagagtaa catcttacag gaaattctcc cgcaccacac tgtggaatta cgcattggta 4800 ttgacaacca agctgcacac gttctagcta caaatcctac ctacagtcgc cgcactcgac 4860 acatcgagtt gcgttggcat tacgtgcgtg aacaagtgga acgtggagtg ctcaatctac 4920 ataagatcaa aggggatgag aatcctgctg atacttttac gaaagcactg gacaaattgc 4980 gtctcaagaa tctgattgct agtgttggca tcggagatgc aaagtaatca aagctggagc 5040 ttcgaaggag gcgtgt 5056 // ID BSTUI_CE repbase; DNA; PLN; 940 BP. XX AC D17807; XX DT 16-MAY-2005 (Rel. 10.05, Created) DT 16-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE BstUI repeat from C. ellipsoidea C-87. XX KW BstUI repeat; BSTUI_CE. XX OS Pseudochlorella sp. CCAP 211/1A OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Chlorellales; Chlorellaceae; Pseudochlorella. XX RN [1] RP 1-940 RA Aimi T., Yamada T. and Murooka Y.; RT "Nucleotide sequences of BstUI repetitive elements from nuclear RT DNA of Chlorella ellipsoidea C-87."; RL J. Ferment. Bioeng 76, 333-335 (1993). XX DR GenBank; D17807; Positions 1 940. XX SQ Sequence 940 BP; 220 A; 264 C; 252 G; 204 T; 0 other; cgcagaggga ccacgcctcc gataggctgc ccacctgcgc acgcgcattg aacaacgcag 60 ccactgctgg tgccaacatt ggtactgcag catgcaatgc atcgacagac aggaacccta 120 tcgttgaaga actcttgtgc agtatgcgca cgccatggat gatgtcaacg gcagtgaacg 180 gagtgttgag ctcagaccca tctgcaaatc ggttcgcttg tatagcgcgg ggaggcaagg 240 gcatcatttg agtcagagct actgtccgtt ggcgtctcac cagcaacttg ctgaagtgtg 300 acagccactg acccttggtg atgctgggct caaaactgac ttcaaaggtt taaacctccg 360 ccagaatctt gccatctcag atgctttgtt aactaaacta atgacctggg acctcttaaa 420 cctcctctgt ttgcgctgca gcgtacgctg atactctttg cgcacgctgc agggctacag 480 ctgacctggg gttgcgccgc attctgctgt tgcagcccgt cgaccccaag ccaactcatg 540 gtcaaaccaa cgaggctggg caggtgctga tggtgatggg ccctggtgtt ttgcgattgc 600 aaacgaactc ggctaacaat ttatcaaatc tgtcacaaag actgtgtact gctacagtgc 660 cctgccgggg tgcgttggtc gccaaactag tgatgtctgc aaggtccgcc gcataggcag 720 gcaacacatc attgacccag cgctcaatgt tgcccgtgcc cccccatgcg acggacctct 780 ggagcaggac cactaggttg gtccccatca tgcatgggtg ttgtcaaagc aagctcaaac 840 tgcagtgcct ggtgatctgt gaagggtgct ggaacaaccg acaggtgcgt aaccaagcca 900 aacgtctctg gacaagcaac aacgtagtca acaaggctcg 940 // ID Gypsy-4_PIT-I repbase; DNA; PLN; 8055 BP. XX AC AATU01002852; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PIT_; KW Gypsy-4_PIT-LTR; Gypsy-4_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8055 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002852; Positions 134969 126915. XX CC Positions [6738-7250] - Integrase core CC 'AGTG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2202..7502 FT /product="Gypsy-4_PIT-I_2p" FT /translation="MNAEVLAKDGERAKRYIATVRPPMAGARLVRATARVR FT GEGDERTLKDEGEACQSGEGASMSTADGRATAVEKVESADDVVVRRRAERR FT QKHREVKRAQVRRAKASRQTRALAQEEEQRTADEVRRATRLEDRSSALAEL FT SCRRAAHEGDERVHPGREAARVSLVQRRSATQASQKRQDAGDVEYVGADDG FT LPTARMEVEGASRHVKLDSGARYTIAGTDWMEFGDRIDMEAPVDYVEGIGG FT FLLDVVGVWRFSLSNVFGEIISVDACIVDGCTDEFLVGVDFMRSHGATMDF FT QSNEVRYRDNGRLVVIPFRTYDKEGSVKVAAVRMARRMQIAGSAVTPVEIA FT IAAEDGEQGIFIPTRSAGPVMLAATVTRARNGKACVPAINSGDGEARLPPK FT KELGKWIPVDEEMTALAVNGELQRERVLSWLSELGDVDTPLANEDDVKIGE FT TNEGSRRLVMQLLRAYRGTTENMDDCPPATTLNVEHHIDTGDLAPIMLKRR FT RLAQTDDPVVTTNVKKMLDAGVIEEGEGAWGFPVVLVKKKDGEVRLCIDYR FT ALNKVTKKDVYPLPRIDETIEALGGAVLFTTLDLKAGYWQIRVAEADRPKT FT AFTTKQGLYQFGRMPFGLTNAPSTFQRMMNSVLRGLTWMTCLVYLDDIVVF FT TRGGIERHVVEVACVSERLAAAGLTLKLKKCVFATRRMEYLGHELSSEGVR FT PLVRLVTAVRDFPRPVDAVEAKRFVHLAGYYRRFIAGFGSLMAPVTKLRRK FT SAEWEWGDAQEAAFQRVKEILTTKPLLIYPNVKLPFRLVTDASKVGLGACL FT MQDRGRGWQPVAYASKVNSVAEGNYGITELECAAVVWAIKLFRPSVYGRAF FT VIVTDHAALKWLMTSPNLTGKLHRWALTLQEFEFEVEYRPGSTNVVADALS FT RAPVKLAAAVGRRRRAGRRGSAYELASEVGAAVGVAARTEEAATPMDGLPS FT AERMVATTAGDDGQRAGAEAAATEMTVSWEPPMRGEALAEREVRGRGDTRP FT AVVTAPPLTRAAKRRLEATQSAAAGKSASNDDKQAQEVAAKTAVNPPRAKP FT KDDGRAQEVAAKTAVNPPRAKPKDDGRAQEVAAKTAVNPPRAKPKDDGRAQ FT EVAAKTAVNPPRADLKDDGRAQEVAAKTAVNPPRADLNDDGRAPEVTAKTA FT VNPPRAKTIDDGRAPEVAAKTAVNPERADLKDDGRARKVAAETAVKPARVK FT TRGDERVSAVAAKGAEKSGEVEPGAERRGAGEGAVTGSSPKKRLVRRKVRF FT DVPVAAGPKAAKWSGGLRARRDARAKWPAATVAKPVVSRVLAKSGERGERG FT NEAEPAEETARRKGARAVERGEIGGRRSTTTPYAHEQQSESRAAVGEVNER FT VYPIQGPSGEQAVSEWETTVMQVPVVNDDTDEQRMPPTLQMTDDAVIAAQR FT RSKWVQRAVQDGKYRGVPVQLRHGLATVETPRGRRVMLPPELWPVAFKVHH FT DSVWAGHLRAPHTYERIAQHYWWPDLRREVKKWVRGCQECGSRKAKPREVV FT PPLRSIRGGDVGDRWALDVAGPLPVAGGGQRYVIAAVEYVTRYAVAKAVRH FT HTAENVAKFIMDEVVLKFGVFRELLTDGAPELAGRVIEQLVMLLQAQQINP FT VPYRPQMIGLVERFHRTWKDCVATYMKTDAQNDWAEWISFAVYAYYSGRHS FT TVALSPNELMMGRGLRSPNELLQRAQVTEAGDLAGYHRQLLVALKRSHVAA FT ERARVREQLRQARYYNRNVRNRREFAPGDRVWMYRPPRGPKSTKFVH" XX SQ Sequence 8055 BP; 1966 A; 1814 C; 2922 G; 1353 T; 0 other; tggtggtcat acaggggcta aacacgacta aaacgcgtgc atcacgagat aagatggcaa 60 gtacgaagac gcaaacgaag tcgaggagtt cgcggatgag gcgggtcaag acgaggacgt 120 cccctcgaat cgggaagttt caaggagcga ctcaaaagga gaaggaacag cgcgacgaac 180 aggatgacga tggagaagac gacgccggtg cgttacaggg tgacacgcac ggagagactg 240 gagaggagtc agcggccggt agtgctgctg gcactagaaa cattccgggt gaagcggtgc 300 ctccgcagtc tgatgcgatg atcatggcgg cggcaatcga tgagctacgc gcgatggtgc 360 agaatctgca atctgctcca cacgacgctg agcacgggga cgagcacgag gagcgacgcc 420 acggacgacg gcagagcagt gaagcgacaa gaagacgacg tagttacggg cgttcgcaac 480 gatcacgacg acaccgtagt gatagcgagg gctcggaaga cgaagagggg agacggaggc 540 gtgcgatgtc acggaggccg acaagatccg gacgatcatc aggcagtgat gaccatggag 600 acgagagtga tgacgacgac gcttccgacg attcgcctag cagcagcgag agcagttcag 660 aggaggagag cagctcgagt gacgacagta gcgacgctga ggatgaggac ctgaatctga 720 gtagcgaatc cgagcgctcg caccgaggtg gacgacggga ccgacgtgat cgacacgacc 780 ggcgaaggag tcgagagttg gatgagcagc cgaggcggaa gagcgtgaag gagctagagc 840 ttcccacgtt cacaccgtcg ccgaaggtgt ccgtgtcgac ttggatcgac cgagtcgacc 900 tggcccttaa gggagctgag gagtcggggt gagggcagtg gactgaccgg gcactatacc 960 tcatcatggg caataaactg atggagaacg cggcacggtg gtgggttaat atggatcgga 1020 gactgaagga tcgcaagaga cggtggacct atctgaagaa ggcacttctg agacgatatg 1080 gcgagcgact tgacaagtca gccgctgaat ggcgtgtcaa cagtaggagg atgtggcctg 1140 tagagacgta cgccgactac gcagctcgtg ctctgggagt gggtcggtaa gaaccgagtg 1200 agcgagcgag tactattagc tcagttctac aggtgtcttg acaagactac gaggaagttg 1260 gtgcagcaga aacccaagcc gaagactttg gagaaagctg ttgccaaggc aacgaagatc 1320 gatgatccga tggagaatgt ggcgttgggg atgtccaaca tcgggcaggt gtgggcgacc 1380 gctcccagcc catacctggt accaatggcg gggacgatgg gtcaaaccat ggtgattccg 1440 ggcgtcggtg gtgcgggtct tccggctggt atggcagcga tggcaggaca cgcaggcacc 1500 gccggcagtg agggaggagg tgtggctctg tttaccaacc ctcaaggtgt gtggaacgac 1560 tattccggta cctgggacgt gccaccaggc cacacctgga atggcaagta ctgggtcgca 1620 accaagagcg ggcggaagag aacgcaggac gcgcagacgt cgagtaagaa tccggagcgg 1680 aagagtcgaa gccatcggga cgaggagtcc agtggcgcag aatccgatgc gaggccggtg 1740 agaaagaaga cgaaagcagc tgtgaggcag tcggcggggc agaaagacag cttaatgccg 1800 ccaagtgtag caagcagacc tttatttcat tgctacaagt gtggagaagt cggccacggg 1860 gcagcggtgt gtccgaacgg ggtgaagtgt ttcgcgtgcg gggagtttgg tcacttggct 1920 agagactgca cgaacgtcga ggccaagtcg cggaacgagg cacgacggaa gccgcgcgac 1980 gaagataaaa agtctgagga aaactaggtg cggacgtggt gaggggacta cggcgtccgg 2040 tcttactggt ggatccccgg caagcggtgc gggccaagga tgaagaagtg acgatctacg 2100 acaggcaagg cgcagaggag cagacgtcgg tggcaacgag ggtgagtaag caaggcgaga 2160 gagagaacga gggcacgtgc gtaagtgcgg tgttggagta gatgaacgcg gaggtgttgg 2220 caaaggacgg agagagggcg aagcgctaca tagccacggt acgacctcca atggcgggtg 2280 cgcggttggt gcgggcaacg gcacgagtga gaggcgaagg ggacgagagg acgcttaaag 2340 atgaaggaga agcatgccag tcaggagagg gcgcgtcgat gagtactgct gacggacggg 2400 caacggcggt ggagaaggtg gagagtgctg acgacgtcgt ggtacgccgg agagctgagc 2460 ggcggcaaaa gcatcgagag gtgaagcgag cgcaagtgag aagagcgaag gctagtcgtc 2520 agacccgggc actggcacag gaagaggaac agcgaacggc agacgaagtg cggcgagcaa 2580 ctaggctgga agatagaagc agcgcactag cggagctgag ttgccgtcgt gcagcccacg 2640 aaggcgacga gcgcgtccac ccgggtagag aagcagcacg tgtgagtctg gtgcagcggc 2700 ggtcggccac ccaggcctca cagaagcgac aagacgccgg tgacgttgag tatgttggtg 2760 ctgacgacgg gctacctact gcgagaatgg aagtcgaggg agcatcgcgt catgtaaagc 2820 tggatagtgg cgccaggtac acgattgctg ggaccgactg gatggagttt ggtgatcgca 2880 tcgacatgga agctccggtg gactatgtgg aagggatcgg cgggttcctg ctcgacgtag 2940 taggtgtatg gcggttcagc ttgagcaacg tgtttgggga gatcattagt gtggacgcgt 3000 gcattgtgga cggatgcact gacgagttct tggtgggcgt ggacttcatg cgaagtcacg 3060 gagcgacgat ggacttccag agtaacgagg tgaggtaccg cgataacgga aggctagttg 3120 tcatcccgtt tcggacgtac gacaaggaag gaagcgttaa ggtagcagcg gtacgtatgg 3180 ccagacgtat gcagattgcg gggagtgcag tgactccggt ggaaattgcg atagcagcag 3240 aagacggcga gcagggcatc tttataccga cgcgaagtgc gggacccgta atgctggcag 3300 ctacggtgac tcgtgcacgt aatggtaagg cgtgcgttcc ggcaattaac tccggcgatg 3360 gcgaagcgag gctgccacct aagaaggaat taggcaaatg gatacccgta gatgaggaaa 3420 tgacggcact ggcagtaaac ggagaattgc agcgtgaacg agtcctatct tggttgagtg 3480 aattgggtga tgtcgatacg ccactagcta acgaggatga tgtaaagatt ggagagacaa 3540 acgagggcag tcggcggtta gtgatgcagt tgttgcgggc ctatcgtgga accacggaaa 3600 acatggacga ttgccctccg gcaaccacct tgaatgtcga gcatcatatc gacactggcg 3660 acttggctcc aattatgttg aagaggcggc ggttggcaca gacggacgat cccgtggtca 3720 ccaccaacgt aaagaagatg ctagacgccg gtgtcatcga ggagggagaa ggagcttggg 3780 ggttccctgt ggtgttagtc aagaagaagg atggtgaagt gaggctctgc atcgattatc 3840 gggctctcaa caaagtgacc aagaaggacg tctatccgtt gcccagaatt gatgagacta 3900 tcgaggcact tggaggtgcg gtgctgttca cgacgctgga cttgaaggct ggttactggc 3960 agatacgagt ggcagaagcg gatcggccta agacggcgtt cactacgaag caaggcttgt 4020 accagtttgg gaggatgccg ttcggattaa cgaacgcgcc ctccacgttt cagcgaatga 4080 tgaacagtgt tctgcgtggg ctaacgtgga tgacctgcct agtgtaccta gatgacattg 4140 ttgtttttac gcgtggtggt atcgagcgac atgttgtcga agtagcgtgt gtgtcggagc 4200 ggctggcggc ggcgggactg acgctgaagt tgaagaagtg tgtctttgcc acgcgaagga 4260 tggagtattt gggccatgag ctcagttctg aaggtgttcg gcctctggtc cggttggtga 4320 cagccgtacg cgacttccca cggccagtgg acgccgtgga agctaagagg ttcgtacatc 4380 tcgccggcta ttaccgacgg ttcattgcgg gattcggatc attgatggca ccagtcacga 4440 agttacggcg gaagagtgcg gagtgggagt ggggcgacgc ccaagaagcg gcgttccagc 4500 gtgtgaagga gatcttgacg acgaagccac tgcttattta ccccaacgtt aagttgccgt 4560 tccgactggt gacggacgct agtaaggtag ggctcggtgc gtgcctaatg caggatcgcg 4620 gtcgcgggtg gcaaccggtc gcgtacgcaa gcaaggtgaa cagtgtggcg gagggcaact 4680 acggaattac ggagctggag tgtgcggcag tcgtctgggc catcaagttg tttaggcctt 4740 ccgtgtacgg aagggctttc gtgatcgtga ccgatcatgc cgcgctcaaa tggctgatga 4800 ctagcccaaa tttgacgggc aagttgcacc gctgggcttt gacgctgcaa gaatttgagt 4860 tcgaggtcga gtaccggccg ggcagtacca atgtggtggc tgacgccttg tccagggcgc 4920 cggtcaagct tgcagcggcg gtaggcagac ggcggcgggc aggacgacgt ggatctgcct 4980 atgaattagc atcggaggta ggtgcggcgg tcggcgtggc cgcgaggacg gaggaagcgg 5040 ctactccaat ggacggattg ccgagtgcgg agcggatggt ggcgacgacg gccggcgacg 5100 atggtcagcg ggcgggagcg gaggcggcag caacggagat gacggtaagt tgggagccgc 5160 cgatgcgggg cgaggctcta gcggagaggg aggtgcgtgg tcgtggtgac acgaggccag 5220 cggtggtgac ggcgcctcct ctcacgcgag cagccaaaag acgcctggag gccacgcaat 5280 cggcggcggc aggtaagtca gctagtaacg acgataagca agcacaggaa gtagctgcaa 5340 agacggcagt gaacccgccg cgagccaaac ctaaagacga tgggcgagca caggaagtag 5400 ctgcaaagac ggcagtgaac ccgccgcgag ccaaacctaa agacgatggg cgagcacagg 5460 aagtagctgc aaagacggca gtgaacccgc cgcgagccaa acctaaagac gatgggcgag 5520 cacaggaagt agctgcaaag acggcagtga acccgccgcg agccgacttg aaagacgatg 5580 ggcgagcaca ggaagtagct gcaaagacgg cagtgaaccc gccgcgagcc gacttgaatg 5640 acgatgggcg agcaccggaa gtaactgcaa agacggcagt gaacccgccg cgagccaaaa 5700 ctatagacga tgggcgagca ccggaagtag ccgcaaagac ggcggtgaac ccggagcgag 5760 ccgacttgaa agacgatgga cgagcgcgga aagtagctgc agagacggcg gtgaaaccag 5820 cgcgagtcaa aacgaggggt gacgaacgag tatcagcagt ggcagcgaag ggtgctgaga 5880 aatctgggga agtggagcct ggtgccgaac gacgcggtgc tggagagggc gcagtcaccg 5940 gcagtagtcc gaaaaaacga ctggtgcggc gcaaggtgag atttgatgta ccagtcgctg 6000 ccggtccgaa ggcagcgaag tggtcgggtg ggctgagagc gcgacgagac gcaagagcga 6060 agtggccagc ggcgacggtg gcgaaaccag ttgtgtcgcg ggtactcgcc aagtcgggcg 6120 aacgaggaga aagaggtaat gaggctgaac cagcggagga gacggcgcga cggaaaggag 6180 cccgtgcggt agagagggga gaaatcggtg gacgacgaag cacaacgacg ccgtatgcgc 6240 acgagcagca gtcggagtcc agagcggcgg ttggtgaagt gaacgaacgg gtgtacccca 6300 ttcaaggacc ttcgggagag caggcggtat cggaatggga aacgacggtg atgcaggttc 6360 cggtcgttaa tgatgatacg gacgagcagc gaatgcctcc aacgctacag atgacggatg 6420 acgctgtgat cgcggcgcag cgtcgtagta agtgggtgca gagagcagtt caagatggca 6480 agtatcgagg cgtaccggtg caacttcgac acgggctggc gacagtagag acgccacgag 6540 gacggagagt aatgttgcca cctgaacttt ggccagtggc gtttaaggtt catcatgatt 6600 cggtatgggc gggtcacttg agggcgcccc atacgtacga gcggatcgcg cagcattact 6660 ggtggccaga cttgcgaaga gaggtgaaga aatgggtgcg tggctgtcaa gagtgcggta 6720 gccgcaaggc aaagccgcgc gaagtagttc ccccgttgcg gagtatcaga ggcggagacg 6780 ttggtgatcg ttgggcgctt gacgtcgcgg gacccttacc ggttgcaggt ggaggacagc 6840 ggtacgtcat agcggctgtt gagtatgtga cgcgctacgc ggtggcgaag gcggtgaggc 6900 accacacggc cgagaacgtg gccaagttta tcatggacga ggtcgtgttg aagtttggtg 6960 tatttcgaga attgttgacg gatggagctc cggagctggc aggacgagtg attgagcagc 7020 tcgtgatgct gctgcaggca cagcagatca atccggtgcc gtaccggccc cagatgatcg 7080 gcctcgtgga gcggtttcac cgcacttgga aagattgtgt ggccacctac atgaagaccg 7140 acgcgcagaa cgattgggcg gagtggattt cttttgcagt gtatgcgtac tactccgggc 7200 gtcactcgac ggtggcgctg tccccgaacg agctcatgat ggggagaggg ctgcgcagcc 7260 cgaacgagtt actacagcgg gcacaggtga cggaagcagg ggatttggcg gggtatcacc 7320 ggcaattgtt ggtggcgttg aaacggagtc atgtggcagc ggagcgtgca cgggtacgtg 7380 agcagctacg acaggcgcgg tattataacc gcaacgtgag gaatcggcgg gagttcgcgc 7440 caggtgaccg agtgtggatg tatcggcctc ccagaggccc taagtcgacg aaatttgtgc 7500 attagtgggc agggccaatg aaaatcattg agcccgctgg gtttgagaac ttcttgatcg 7560 agcgtgagga tcaggacggc gaggcggagc gatttatagc tcacgtgtca tttctaattt 7620 cgtatcacta cccggtggac ctgttgaagc gggcgacgaa cgacattgtg gagtagctag 7680 gcgatgaaga tcaagaagac caccggcccg aggatcaagg tgggcgtgac gtcaatgccg 7740 agacggcagg agcgtctgct ggagcaacga cggctcatgt ccatgcagcc acggctgctg 7800 gaagccgaaa gaggaaagca agaggagctg aagacgagat ggagctgcga gagtcgagtg 7860 ggcctttggt ggaagttcga aggcgaaagc gacgtaacag tgccgggtac tatgtgctcg 7920 agtatgcgct gcggccgctg caaaaagggc gatgcagtct cagcgacggc gacaacgcct 7980 gggtatccag cggtgtctat gacgagttat ttgcagccgg cagagtcgtg gaagactctg 8040 cgttggagga gggcg 8055 // ID Gypsy-23_PSo-I repbase; DNA; PLN; 13335 BP. XX AC AAQY01000032; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_PSo_; KW Gypsy-23_PSo-LTR; Gypsy-23_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-13335 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000032; Positions 70099 83433. XX CC Positions [7210-7692] - Integrase core CC 'GTGA' target site duplication CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS 96..1844 FT /product="Gypsy-23_PSo-I_3p" FT /translation="MVKGIVTPSPATVGSNSAGLTNSADSANAMITDATAD FT EARTVQFDEEDAQDQESEEDVEDDYEEKAELLGEVDELSLQVGRMGTPRPV FT VCNLAAELGNDTDDEDQAAAQGERPPLIPRATRNADTPSANKVLGRLGEEM FT RAQSEWMMMFAPVAMAQARWPVLGPELTQPVNSTDINQLVEDTVLLLKAMG FT LRCTSRPNSLLLGDWDPSRASREILKWKRRLRVSFGLERGAVGTRQTIAKR FT VADTPKTVEDPSRIPLPKTPERRRAEVFRSTEGTPYFEDSHMKTPARDKQP FT SGRYAELFDAADAAELSDSDDGREYLNSAEESVKDVIKHLSFDDAESDRTQ FT YLEVRTHASLDKIPMFEGKRYRPDDSLQWLKRFIYEMKGTRLAQDLWYEPF FT SLKLERGAKSWYRQLPKKTQRKWSLLSEAFADYYCSQFDQSARARYYSAQR FT KDNELVCDFLVRLNGYAESAKIQYEAGGADAADHVEHFLLHCGDDDIMDLL FT YPQQLTDIKKVEKIINQKILGERRKKQRDRLIGSRSRDAKRTDSPRHSEAR FT GVSRAEMTAETTAGKDAEMTAGMIGEADATMVETVD" FT CDS 2641..3882 FT /product="Gypsy-23_PSo-I_1p" FT /translation="MKLLPGERLGWWSSQKFDRRVRMRALVMGAVNDQRTK FT ILLDTGANVSATSEGFAKRLRLKRFTRQDQQIGVQGIGKGKVATMSRAMVK FT VTLGWEVTYEFEVWILDHHAGVELILGTDFMIPAGIRLDLYNSVAKLPDEV FT VLPLVRSQNSADEPKGGLYITDGPAEPVNLESRVPAEFRLMRNQPSNETHH FT FWVRRTKAWVPTVVFDRRNRVARVRLTNLKPTWTWCPAHFPVVAWAPHGVL FT PPDGYVRLHSAKYKDWQVMAYEAAMDKDLLQKEQHLYAEWLARQPSAVDRR FT NYPEPKGVTTWPSTKQRDSALTCAQQWEKLAESEERVEAEAVDSPPSTLTE FT PANSATATLAPEELELSAEPTADLVNGPPSRAEITVAAGQEAPSQNTEALV FT RHDDQRRWEDDLATRRRRCC" FT CDS 4492..8088 FT /product="Gypsy-23_PSo-I_2p" FT /translation="MGIAHRDWPKEECRLCIVYKLVNAITLLMEYAMPLVD FT DLLTELEAYLRFCSLDTASGFWAVMMTRRARWISAFVCALGHFEWLRMSFG FT LKNAPMIYQRLIDNALWGYVQPKGGWKVFAKRIQQAQAASEAQRKRLAADI FT DFEASGQTKFEADRRAQAEFDPLEEFINSPEADMFRTGEPDESCLAPVFDR FT RSFVDDICFGGRTFDDCLGTLDRLLQRFTECRISVSFPKSIFVQPKVDFLS FT HGVTSAGIQADQKKMLAIAGLPFPTTKKGMQTFLGALNYYGRFVQNLAVYG FT AVLYQLKDEDFGPGGDLTAAKAAFAELNQQVVDAPILRHFNSAEDVHVMLF FT ANEWALSSTLMQLHDGKLHPVRFCGRVLKDNELGYNPAEKEVLALLQLIKV FT CHTLLAGKTIHIYTRYSTLEWVFQSKSLYGRAVSFAVLLSPFHLKVKRVRE FT RDTDFAQLLQASITPAVGLDELLTHVTPPSKNWAVVRMDPELLYAHVPRDF FT KGHVLSFDGSAKTAKHGGFGSCSWILWRLPDWNSEIAASAHLPSTTVNIAE FT YTGMNNGVTSAIERGVTDLIIVGDSRLAIQQSMGVIACKKEALQVELARHK FT KLVSKLNSVRYLHVVRLYNSAAESLATEALETKAGKVVLSAGRKAELKTLN FT RISEVLYVDTDSAAAPAEGVEMAAVTRSQVRRVRFEDEAAEHPVPDPATDE FT EAERNDYERDSRPPPARQRVTGEAEFGSAAPPANPAELVAELGEAWEPNAM FT DIDPVVVQAERRLRIARAQDEEQRWADLKTYLRWDYAQLTHRRAHNAGKVA FT DEFVLSEDGLLYRQGKARPPGELGELGLSLRLVVPTTMIDEVLQNCHNSIE FT GGHQGIVRTYHRVRADYYWIGSYADVVKHVQACEDCSTSKSKPHLKGYSPG FT NVVSERPFHEVSMDFVIPLPNTRRGNTALLLFQDHFTGFAIAKAMSETGAL FT EVAKAFEENVFRRFGAPSLVRHDRDPRFMSEVFQKFSEMMQSKSRATLSYR FT TQANGQQERSVKTMIQTVRVYVEDPLQADWDDVAEKLVHAINNSRGSTRRE FT TPFYLVHGWDARYTLKAMTESVRLGRGNSADSTGAAECRREANRQREVALK FT LAAEFQLKEKKRRAKGHNDGLSRVEQRAVPAGEEGTDTPANSPEGAAESTE FT EGDELAESRKSLFKEGDQVWLFMERVRPGLTKKLAHRWHE" XX SQ Sequence 13335 BP; 3155 A; 3655 C; 4129 G; 2396 T; 0 other; actggtgccg cgacccggga acaggggcgt gcttgtgttt cgtaggtacc agctaaccaa 60 ggtttgagaa gaagagaaga gaagagagtg tgaagatggt caagggaatt gttacgccga 120 gtccagcgac ggttggaagt aactcggctg gactgaccaa ctcggcggac tcggcgaatg 180 cgatgatcac ggacgcgacg gcggacgagg cgcgcaccgt ccagttcgat gaggaggatg 240 cccaagacca agaaagtgag gaagatgttg aggatgatta tgaggagaaa gccgagctac 300 ttggcgaagt cgacgagttg tcgctgcaag tcggacgaat gggtacccca cgtcctgttg 360 tgtgcaacct ggcggccgag ctcggcaatg atacggacga cgaagatcaa gccgccgctc 420 aaggggaacg tccgcccctg atcccgcgag cgacgaggaa tgcggatacg ccaagtgcga 480 acaaggttct gggcaggctc ggagaggaga tgcgagctca gagcgagtgg atgatgatgt 540 ttgccccagt ggcgatggct caggcgagat ggccggtgct agggcccgag ctgactcagc 600 cggtgaacag caccgacatc aaccaactgg tcgaagacac ggtgctgcta ctcaaggcga 660 tggggctccg gtgcacgagc cgacccaaca gcctgctact cggcgattgg gaccccagcc 720 gagcttcacg cgaaatcctc aagtggaagc gtcggttgag agtctcgttt ggtctcgagc 780 ggggggccgt cggaactcgg cagactattg cgaaacgagt ggctgatact ccgaagaccg 840 tcgaagaccc cagcaggatt cccctgccga agactcccga acgcaggaga gccgaggtgt 900 tccgctctac tgagggtacg ccgtatttcg aagattcgca tatgaagacg ccagcgcgtg 960 acaagcagcc aagtggacgc tacgctgagt tgtttgacgc tgcagacgca gccgagctca 1020 gcgacagcga cgatgggcgc gagtacctga actcggctga agagtcggtg aaggacgtca 1080 tcaagcacct tagcttcgat gacgccgaaa gtgatcggac gcaatacttg gaggttcgca 1140 cccatgcgtc cctcgacaag atccctatgt tcgaaggcaa acgttaccga ccggatgact 1200 ctctccagtg gcttaagcgg ttcatctacg agatgaaagg aactcggctg gcacaagacc 1260 tctggtacga gccattctcg ctgaagctgg agcgaggcgc gaagagctgg tatcgccagc 1320 tcccgaagaa aacgcaacgg aagtggagtc tgctgagtga ggcattcgcc gactactact 1380 gttcgcagtt tgaccagtcg gcacgagctc gctattactc ggctcagcgc aaagacaacg 1440 agctggtgtg tgacttcctc gttcgtctca acggatatgc ggagtcggcg aaaatccagt 1500 acgaggccgg tggagcggat gctgctgacc atgtggaaca cttcctgttg cactgcggag 1560 atgatgacat catggatctg ctctatccgc aacagctcac cgacatcaag aaggtcgaga 1620 agatcatcaa ccagaagatc ctgggggagc gccggaagaa acagcgcgac cgtctcatcg 1680 gaagccgcag ccgagatgcc aagcgtaccg attcgccaag gcactcggaa gctcgcggag 1740 tgagccgcgc cgagatgacc gccgagacga ccgccgggaa agacgcagag atgaccgccg 1800 ggatgatcgg cgaagccgac gcgacgatgg tcgagaccgt cgactagcga cagcgctgct 1860 ggaggacgac ccgtatgagc tggctgagag acgccaatcc aatcggcgat ccaacctcta 1920 cgactcggac agcgaccaga gcgacggcag ccagccgagc tactccgact cggctgtaga 1980 ctcggaagac gattacatcg acaccgggtt caccagcgac cgcgaccgta gatcggggga 2040 ccgagggaac tcagctggga caccaaggag tgattaccga aggggtcagc cgagctcggc 2100 tgaccgcgcc agtcgaggat acgatcggcg tgaccagact gggcggcgca gtgactcccg 2160 tgaacgccct tcgtatggac cttgtgctgc ctgcggtggt gcgaaccact ccgttcacta 2220 ctgccgccgt cactgcaagt tctgcaagca attgcacgat gtcggtcaat gcgagctgtt 2280 ccagcgctat gagaagctcg ccgcatttgt caagtccaat gtcgacaagt ccaagttacc 2340 tgaagacctc caggacctct acacgccgag tgatttaaac tcggcggccc gccaacactg 2400 actgggttgg atgataccgg gctgccacag tctgctgagc cagcagtaga ggcgaacttt 2460 gtgtttgcct ttgtgggtga ggcaggaagg cccgaggacc gaggagaaga cgacgtattg 2520 gattgtgaaa gcgatggact tgatggtgag ctcggcaaga gtggagaaga aagccgagca 2580 agattgtaca gtgcagttgc gactcagcga tcgacggatg tgaccacagc caccagagtt 2640 atgaagctgc tccctgggga gcgactcggc tggtggtcgt cacaaaagtt tgaccgccga 2700 gttcggatga gagctcttgt tatgggagca gtgaacgacc agcgtacaaa gatattgctc 2760 gacaccggtg cgaatgtgtc ggcaacaagc gaagggttcg cgaagaggct acggttgaag 2820 cggttcacac gccaggacca acagattggc gttcaaggta ttgggaaagg caaagtggcg 2880 acgatgtcac gagcgatggt gaaggtgacg ctcggctggg aggtcacgta tgaatttgaa 2940 gtatggatcc tcgatcacca cgcgggagtc gagttgattc tcggtacgga cttcatgatt 3000 ccggctggga tccgcctgga tctgtacaac tcggtggcga agttgccaga tgaagttgtc 3060 ctacctctcg tgaggtccca gaactcagcg gatgaaccga agggcggcct ctacatcaca 3120 gacggcccgg ccgaaccggt gaatctcgag agccgagttc ccgccgagtt caggctgatg 3180 aggaatcaac cgagtaatga aacacatcac ttctgggtac gccggactaa ggcctgggta 3240 ccgaccgtgg tattcgaccg gcgtaaccga gtggctcgag ttcgcctgac caaccttaag 3300 ccgacttgga cgtggtgccc agcacatttc ccagtggttg cctgggcgcc gcatggggtg 3360 ttaccgcccg atggttacgt caggctgcac tcggcgaagt acaaagattg gcaagtcatg 3420 gcctacgaag cggctatgga taaggatctg ctgcaaaagg aacaacacct gtacgccgag 3480 tggctggctc gacagccgtc agctgtggac cgtagaaact accctgaacc gaaaggggtg 3540 actacgtggc cgtctaccaa gcagcgggat tcggcactga cttgcgccca gcaatgggag 3600 aagttagctg agtcggagga gcgagtcgag gcagaagcag tcgatagtcc accctcgact 3660 ctgacagagc cagcaaactc ggctaccgct accctagcgc ctgaggaatt agaattgagc 3720 gcggagccta ctgctgactt ggtcaatggc ccgcctagtc gagcagagat cacagtggcg 3780 gctggccaag aagcgcccag ccaaaacacc gaggctttgg ttcgccacga cgaccaacga 3840 cgctgggaag acgatctggc taccagacga cgacgatgct gctgataaat tggactgtgc 3900 agcagatgaa tgtgaaagtg agcaatccag cgatttgtct gactggacga tcatagacga 3960 ccccgggccc aagccgccga gtccaaggct cgaagatgag gtcgatgtga gcgacgagcc 4020 tatgtcgtca gacccggagg aagacctgcg cttacgttac cttctggcag tcaagtacga 4080 ggaagagaca gatggccgag gcgactcggc gggagactca gccgagttcg agcaccaagc 4140 aacgaacttg gagctcgaag actatgctcg cgagttggcg ttcctgcccg atctgactga 4200 agcggtgtcg acgccactcg actatgaagc accaaacgtt cggagctcgg cgcacactcg 4260 gccacagtct actcggctgg tggaagtatt gaagagccat gaaaagatca tgatctccag 4320 tggtaatgcc ctacctccac cagcatacgg cgtagtgtgc gacatcgacg tacaggggca 4380 tccgccaatc cgccaacgag cccgccgagt tccgctgaag catctcggca agttgtacga 4440 gctgctcaag gcgctgttac gagcactgct aatcgccttc tcgaacagcc catgggcatc 4500 gcccatcgtg attggcctaa agaagaatgt cggttgtgta tcgtctacaa gctggtaaac 4560 gcgattacgt tgctcatgga atacgccatg ccgctagtgg acgatctcct cacggagttg 4620 gaagcgtacc tacggttctg ctctttggat actgccagcg gtttctgggc ggtcatgatg 4680 actcggcgtg cgcgttggat ctcggctttt gtctgtgcgc ttggccactt tgagtggctg 4740 cggatgtcct tcggattaaa gaatgcccca atgatctacc agcgccttat tgataacgct 4800 ctgtggggtt acgtacaacc caagggcggc tggaaggtgt tcgccaagcg catccaacaa 4860 gcgcaagccg cctcagaagc tcagcggaaa cggctcgcag ccgacatcga ctttgaagcc 4920 agtggccaga ccaagtttga ggccgaccgc cgagctcaag ctgagtttga cccattggaa 4980 gaattcatta acagcccaga agccgacatg ttccggacgg gtgaacctga tgaatcgtgc 5040 cttgcaccgg ttttcgaccg gcgatcgttt gtggacgata tctgcttcgg tgggaggacg 5100 tttgacgatt gcttggggac gcttgaccga ttgctgcaac gcttcactga atgccgcatc 5160 agcgtcagct tcccgaaaag catcttcgtc caacctaaag tcgacttcct gtcacatggg 5220 gtgacctcgg ctggaatcca agccgaccag aaaaagatgc tggcgatagc cgggctaccg 5280 ttcccgacga cgaagaaggg gatgcaaaca ttcttaggag cgctgaacta ctatggccgg 5340 ttcgtccaga acctggctgt atatggggcg gttctctatc agctgaagga cgaagatttc 5400 ggacccggcg gtgatctgac ggccgcaaaa gcggcgttcg ccgagttaaa tcagcaggtg 5460 gtcgacgcac ccatactccg ccacttcaac tcggctgagg acgtccacgt tatgctattc 5520 gccaatgagt gggctctgag tagcacgctg atgcagctcc acgacgggaa gctccatcca 5580 gtgcggttct gcggccgagt cctcaaggat aatgaactcg gctacaatcc cgccgagaaa 5640 gaagttctcg ccttgctaca gctcatcaag gtgtgccaca cgttgctcgc cgggaagacc 5700 atccatattt acacccgcta ctcgactctc gaatgggtgt tccagtcgaa gtctctctac 5760 ggcagagcag tcagctttgc ggtactgcta tcaccgttcc acctaaaggt caagcgggtc 5820 cgcgaacggg acacggattt tgcccagttg ctccaagcgt ccatcacgcc ggcagtggga 5880 ttggacgagc tactaacgca tgtcactcca ccgtccaaga actgggctgt ggtccgcatg 5940 gacccagaat tgctgtatgc gcatgtgccc cgagacttca agggacacgt cttgtcgttt 6000 gacggatcgg cgaagactgc taaacacggc gggttcggga gttgttcttg gatcctatgg 6060 cgtttgccag actggaacag tgagatcgct gcgagcgcgc acctcccatc gaccacggtg 6120 aatatagccg agtacaccgg catgaacaat ggggtgacct cggccattga gcgcggggtg 6180 acggatttga tcatcgtggg cgactcccgg cttgcgatcc agcaatccat gggggtgatc 6240 gcgtgtaaga aggaggcatt gcaagtcgag ttagcacgcc acaagaaatt ggtcagcaag 6300 ctgaattcag ttcgctacct tcacgtagtg cgtctctaca actcggcagc tgagtcttta 6360 gcgaccgaag cactggaaac caaagcagga aaggtcgtgc taagcgccgg acggaaagcc 6420 gagttgaaga ccctaaacag gatctctgag gtcctgtacg tggacacgga ctcggctgca 6480 gccccggccg agggtgttga gatggctgcc gtgacaagga gtcaagtccg ccgagtccgt 6540 ttcgaagacg aagcggcaga acacccagtc ccggatccag ctacggatga ggaagccgaa 6600 cgtaatgact atgaacgaga tagccgacct ccgcctgcta gacagcgggt gacgggagaa 6660 gccgagttcg gtagcgcagc accaccagct aacccagctg agctggtagc cgagctcgga 6720 gaagcctggg agcccaacgc catggacatc gatccggtag tagtccaagc tgagcgccgc 6780 ctgcgaatag cgagagctca agacgaggaa caacgatggg ccgacttgaa gacctacctg 6840 agatgggatt atgcgcagct cacacatcgc cgagctcaca acgctgggaa agttgccgac 6900 gagtttgtgc tcagcgaaga cgggctattg taccgacaag gcaaggccag accacctggc 6960 gaactcggcg aactaggctt atcccttcga ctggtggttc cgacgaccat gatagacgag 7020 gtcctgcaga actgccacaa ctccatcgag ggaggccacc aagggattgt gcggacatac 7080 cacagggtca gagccgacta ctactggatt gggtcgtacg cagacgtggt caaacatgtc 7140 caagcgtgtg aagactgcag taccagtaag agcaaaccac acctgaaggg ctattcacct 7200 ggcaacgtag tgtctgagcg accgttccac gaggtatcga tggactttgt cataccactg 7260 ccgaacactc ggcggggcaa cactgcactc ctattgtttc aagaccactt caccgggttc 7320 gcaattgcta aggcaatgag tgagactggg gcacttgagg tagcgaaggc cttcgaagag 7380 aacgtgttcc ggaggtttgg agctccatca ctggtacgcc acgacagaga tccccggttc 7440 atgagtgaag tgttccagaa gttctcggag atgatgcagt ccaagtcgag agcgacgctg 7500 agttaccgaa cccaagccaa cggtcagcaa gaacgctcag tgaagaccat gatccagact 7560 gtgcgtgtgt acgtggaaga ccctctccaa gccgactggg atgatgtagc cgagaagctc 7620 gtccatgcca tcaacaattc gagaggctcg actcggcggg agaccccgtt ctacctggta 7680 cacggatggg acgctcggta tacactcaag gcgatgaccg agtcggtcag gctcggcagg 7740 ggcaactcag ctgactcaac gggggcagcc gaatgccgca gggaagcaaa ccgacagaga 7800 gaggtggctt tgaagcttgc ggccgagttc cagttgaagg agaagaaacg gagagcgaag 7860 ggacacaatg acggactcag ccgagtcgag cagagagctg tcccagctgg ggaggaaggg 7920 acggataccc cagcgaactc acccgaggga gcagccgagt cgactgagga aggtgacgag 7980 ttagccgagt cgaggaagtc actattcaag gaaggtgacc aagtttggtt gttcatggaa 8040 cgagtcagac ctggcttgac caagaagtta gcacatcgat ggcatgagtg aagaagaagg 8100 tggaggagtt tgcctacgag ctcgaactcc cggacaagag cagagcggat accgtttcta 8160 ccctgtgata catgtgtcac gtctgaaagc ggtcacggga ctcggcgagc ggccgacaac 8220 taggctagta gccgacttag ccgagtcgga tcgtctcgac tttgacgagg aactccttcc 8280 tgaagatagc tgggagcctg acgaagcaat gaatgaatac gaagtcgaag ccatcctgga 8340 cgacgagttg ccgctctcta cgagcacctc cagaactcag cggaagttca aggtcaagtg 8400 ggtcggctat gatgagccaa cctgggagcc gctgtcgagt ttgtcgtgtg ggggattatt 8460 gttcgactac ttacggcaga agaagcgtga aaaccgcctg caaatggtgc aagttgcaga 8520 cgaggattaa agctattgca ccaaaatgat gaacccgcca acttagtgaa gacagcaggc 8580 tgagttgagg cgaaggaagc tactgcgtca aattgcatac attacatgaa ttacaccgaa 8640 gaatgatggg aaaggaagta gagctcggcg gctgagccgc acgttacgga gacaaaggac 8700 cctgtgaatg cgcgacagag gacacgacgg tagcagcagc cgctgcgagg agaccaatcg 8760 aacctccagt gttcgtagct gagccggctg agctatccgc tgctcccgca gtctgcacag 8820 ccgagtccgc tgagcttgaa gccggaatag ccgagttgtt agccagaggg acactcgatc 8880 ctgcgctcga ctcagctgga gacccaggtg acgccggacc aaagagggaa gccgtgggag 8940 aagggccgca cacgttaggc gacccgatca acggagacgc cggatccgca tcgccaccgg 9000 cccagccgag ctcaccagct tcacaatgtt ggaagatgtg gattcctgca cggttgaccg 9060 gagtcggagc aattgacgaa atctggggag gcgcaggctc gtcgaggtcc acatcttcat 9120 cgacagtatc ctcgactagg cgtggatcca caccagcggg agcgaaaacc atgaattcca 9180 agttacgcgt ccggaagcag gtgttgtacg ggtgcgtcgc tgggtcggtc aaccaccaag 9240 ctcgccaagg ctcggagtcg tctatagact cggcttcagc acaccagtct ctgcccgcag 9300 gaatccaagc aagattgatc agcggataca acgggaccga cggctcgaag aagagctccg 9360 cgtcgatttc cggggcagca agcccgccga gaagcttcat cactgcagtg aacaggtcgt 9420 ccggcaggat agtcatgaga cttcggaggg catcgcctcg acgcttgcga gccaacttgt 9480 acaacaccca tgtgtcatac atctcggcta tcacgtgata tgggagcccc gtgagaaaag 9540 ccggatgtag ccccatcagc acactcgact cgaccatcca gtgacacctc tcggacagtg 9600 ctacgaagag cttggtagga ccctctttgt cacaaaccga gttcggagcc tctccgcgga 9660 tcttcacgaa cacttctgcg agacgtccat caaggtcacc ggcttcaccg agttcgtcaa 9720 ccggcgcttg acatcgtcaa ggacttgagg ggagaagaag ataggagtct tgggaagcag 9780 acgaaggagc cgctgagccg ggtgatccgg atggtagacg tccgcgaacg ctttaatccc 9840 agcgagggaa cagagcgtaa ccggcacact acccttcccc gacgcgtcat ccacagttac 9900 cttggccgtt tgatggctga ggatagcctc ccagcaccgc cgagacccgt aatgaacgaa 9960 gcggacgtca cgcagctgag ctagctgggg agttatccgg gcatctcggc cgaccgcctg 10020 gcgagctcga gtgcgcagct gagcgagcga atagcgtaaa gctgcaggca actgagggag 10080 aacgtgggcg ccagcgtcat gagcggtcac gataggcacc gacagggttg aagctggacc 10140 agcagaaata ggcgacggcg aaacagctga gctcgatggg atgccagagc tcccagccga 10200 gttgttagtc gagctggaag cggcggaaac ctcagccgga ccgacggccg agtccccagc 10260 cgaacctcgc tgacgcttgg acgggcgggg gtccttagcc gagtccggag acgcagacct 10320 cttcgacttc tttgaccctg ccgacttcga cttcgacttg tgcttgtgct tgtgctcgtg 10380 cttgtgcttg agcttgtgct cgcgcctccg cttgcgcttg gccttaccgc tctgcttctt 10440 ggaactcggc tgtgagtctg agtcacctga ctcgctggac agaacgagag gcgattgacg 10500 agcagccatg tagctctgga tcttcccgtg cggaggtggg agcgcagaag ctaacgaagc 10560 ccggcgagat gcgtcagggt cggccgaact gagctcgtca tcagatccag ggtcgtcagc 10620 ctcagattca gagctctcgg acacagacaa cggatgtgct gaggttccag gagcattcaa 10680 tccaagagcc gagcccgacg aaccagagga agagctacgc cgagcggacc ggaggacgag 10740 atagtcagga gtctctaaca gatccaagca gtgagcgttc aacactcggg cagtagccgc 10800 agtggagcgt aaagggcgac gcgatggaga agtcatccca gctgagctag gaggaaccgc 10860 tggccgggtc gaggccaccg acggagtgct cggcattgcg gtgactacag tcgacgccac 10920 ccctgacggg ccacgacgac tctgggcttg attggcaaac cgggaacgag tacatgccaa 10980 gagccggtga gcggccgaac ccgaagaaga ctgcgaaacc ctaggcggaa tcgcagcgga 11040 gctgttagtt gtacccgcag ccgagactcc agccgtcgag ctcggcgcaa tcacagcatg 11100 cgttgtagca agcgccggat cgggagcaga ggaacccggt tgtcctccgg cgccgacagt 11160 cgatgtcacc acagccgcgc tcgccacgct ggtcgaggaa ggaacccacc ggacacaagt 11220 cgggaacgga atcgaggcag gaagcgaaaa agcggacgga gttgcaacaa ggtcagcaga 11280 tccaggcaac gatacaacag ccactccgct tgaaggcgtc tgcaccgggg aggaagagta 11340 aggcacgagt tgcacgggcg gcaaactcac ggccgggacg gcgggccccc tcaggagctc 11400 tgtggaacca ggcacttctg tgaactcgaa cgagaggtcc acttccagcg agtgaacctc 11460 gtcgccggcc tccacattca catcgtcgac agtcaacccg gttaagttca agctcgaccg 11520 gagggatagg tcgcatgcgg cgtcagtctc ttgggcagcc ttttcaagct ggaccaacgc 11580 gtcctcatgg ccgacctcac caggaagtgg acacgcgtcc ggctgctcga gtggcttctt 11640 gggcttgcgc tgagaaccag ccgccgtcgc tgacttcggg tttgagtagc gaagtaattt 11700 ttcggcgggt gtcagagtat ccagccgagc tcggtgaacc tggtcgaccg acttgctgcg 11760 gcgacggcgc gaagcagaag tggacacggg cgtagaaacc gcaccagccg acacaggatt 11820 ggcggcagat gatgcgggag acacgcttgg aagggccgga gcctcagacc cagtcagccg 11880 ggttgattgt ccaagcaaag aaccagccga gctcacgggc gctggcagag tagtagcagc 11940 gccgtccgct cgcgggtgga tggtcaactc gactcgacga gtctctccag ccgggatgtc 12000 catctcctcc gggaaacgtt gagccaagat ccggcataac cgagcattga gctgcaagtc 12060 agcagggctc aacccagtca cgtccaaccc ggctgcagct gcagcagcca tgtgaggatc 12120 atgcatgggt aaaaggccca tgcgagaaat gacacgcttc tgtcggagga tgacctcacg 12180 ctggtgtttg atagtagcct tggcatcacg gagaggctgg gcggctccag aaatgagtag 12240 ccgagccgac tcctgcagtt gctcgaagtg cttggtcgag atcccctgga gcacagcgta 12300 ctcggcgtca cgagccgata gaagctgagt caaacgctca atctccgagt cgcgttccct 12360 gagctgcctg ccgagatcct tagcgtgagc gagagccgac ttcacattat catcctgaga 12420 cttgcgggtc gacttcaagg aagtttcaga ctcggccatc gccttctgga agctggtcag 12480 gagaggggac gacttcttcg actcggcttt ccatcggtca cgctcctcct cgacagtctt 12540 caaccgttcc tcgaggtcgg ccttcacagc cgcctgtaaa tccagccgcc gagtcaagtc 12600 agcgttaata gtccgagcag actccagctc gaccctcagt gcagcgacgt cactagcttg 12660 acttgaaggt tggtgctgac cgcgaaggag gctcacgagt tcgctgacgg acgtcgcctc 12720 gagggcagct cggcggacct ctctatcagc tgccggcgcg ggacgagtga tcacgaatga 12780 caacagccga gccaagtccg cgttctcgat gcggcgttgc tcggactgcg catggatcag 12840 cgcagcgaga gagtcgagac tcaccggccc agccgagtcc gaccgaccaa ggtcggcggc 12900 gtccgaagtg gtgttgccac gcggactcgg caagcggcga ggagaagtgc gagatgccgg 12960 ctcggacgcc cggtcgaacc cacgggaagt tgtcagatcg atgccagggt gctcctgccc 13020 atcgctgacc ccgcgagccc gggacgccga gtcgaccaac tcagcgaact tcccctcatc 13080 tcgcgcggga agatgtgaag actacaaaga cggcgcaact gaagtctgtg aagatcagta 13140 gaagaagggt cagcagcaga atggatggag ccgtcggagg cgaggaacgt actggaggag 13200 cggcgggagc gccggacgac gacatggcgc ggagaattgt tcgctgccgt cggagttttg 13260 gctgagattg gactcgactc aaggagtgat ggtcaggtcc ctcaccaact cggctcggaa 13320 catgaccggg gcagt 13335 // ID Gypsy-30_PIT-LTR repbase; DNA; PLN; 340 BP. XX AC AATU01001424; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_PIT_; KW Gypsy-30_PIT-I; Gypsy-30_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-340 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001424; Positions 388318 387979. XX SQ Sequence 340 BP; 94 A; 90 C; 82 G; 74 T; 0 other; tgatgtaatg caagatcact tgcaccagct cctccaaccc gcagccaact tcgttggaga 60 gatcactgct cagctatagt taagcagatc tctaggtgct gttcgcaggt gctgctccag 120 aaggcatgac aggatgataa agtacagccg gttgttcttc aacgcggact acaacgacta 180 caaggacggc atcccctggg ctgtcgtcat ggcaggcggg tgcgtcctaa actagattag 240 atagctcacg cttcaattga cattgaagca accaagcaac tacaagcaat aaacgttggc 300 ttaacgggag ttccagctcc caaatcgtga gcacgtcaca 340 // ID Gypsy-18_PR-I repbase; DNA; PLN; 5308 BP. XX AC AAQX01002488; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PR_; KW Gypsy-18_PR-LTR; Gypsy-18_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5308 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002488; Positions 758 6065. XX CC Positions [3536-4051] - Integrase core CC 'CCGGA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 80..4984 FT /product="Gypsy-18_PR-I_1p" FT /translation="MPKRRADDSSDEEESSEYSKPMPVPIFAPILPPRLSS FT ISHKALVKWDKLRMEYEAKMRARCRSSGEDYNLVTQNVKESFDLRLLETFC FT ALRLRKDVVDVTEGQLIAEIKHLLGKVKNDDLPDIKTLCAKELRMDLSETD FT VDARVLAYFQRFHEVVLENGLEEVFSGDDGEKEKCKRLVSCLAPPVLKADV FT KSAVRWTNKEAGKSIQKLYTLIYEKAVEHERHFQQNKRMRLMVKDKISLPK FT SAKNVEKSTTAHSKKPPRNDSGKRFLSKKTDTKVEKKIDQKTDKTFKPSIS FT RKEPPSPCPKCQEMHWLSDCTKATDAEKIVLRQKLREANKARQSRVKRLKE FT LMPPTSRTVTINGVLDLPCCPDTGSDYTVISRSQWKLLLDVDPSVQEIPLE FT TPVCSQSYGAHPVVAEKKAMLHVLIHTAAGPVQPVEAVPCLIVDTDDDEFI FT IGQDLLIALGIDVDRQLEQLASHREDDTGGDPFDLEADERPMNPSHVASDE FT EVRAAVETLIERALEHNFPPEKVDKLRTIVHMYDVWRLELRDDPPARVPPL FT EVRLKDGAQPCKCKPRKYPPHVRQFLREFNDQLVTLGWVYENPTSRWASPV FT LPVKKSQELMDLRQTTDYREFNSMTDIMAAVMPILSLVMENARGKQHFGLF FT DFIKGFWQLPLAESCQEWLSYMTDEKIYTPRRVPQGCGDAAIYFQKTMETC FT FATLLYKHLLVWIDDLLLYADDIDTYLGKLDELFSLLNDFGLKLSVKKSSL FT YQQEVKWCGKIIDANGVRHDPARIDSLRAMPYPSTAGELQQFLCAINWMRE FT SLIDYARQVSPLQHRLDEALAKTRRTKRVAAGILIELSAAERAAFDNVKDM FT LASAATLAFPNDSATTCLLTDASDIGWAVIVTQVKDFDIKMPVQDQQHQLV FT ECLSGTFTGSQLNWTVIEKEAFPIALACDKLDYLLLRPQGFRMFCDHRNLI FT HVFAPDENVKKHVKGKLLRWSMKLMNYNYVIEHIAGPNNVWADMISRWAGN FT HVPVTSRISRIRTDTPAAPSAASQQELAREVTGPIISTLRPLDDDNFIWPT FT FVEIILVQSRYEPPSGAVRTDDDVFTLRDRIWIPTEASDLILRLFIIAHCG FT AQGHRGHAAMVEHLRRLFAIEKLNTLASTFVRQCRLCLHSKGGNIIPRPWG FT ETIDCCERNGVLHFDFLFMGESFGDSKYILVLKDHASHFCELVVADTADST FT VTVEAFLAWHSRFGLPPVWISDQGSHFKNEVVSELSRRLRTQQQFTPAYCP FT WINGSVERVNRDILQVIRTMILEYKINHSDWVYLVPMVQSSLNHTAVPSLG FT HKAPVELFTGLPCPTPLKEFYLPGSGEFKEVPASDKIDDFLVNLRSSIQDM FT HKAVEEQRLKQRLLNKKRERGENMVNFMEGDYVLRSRVDEKNGNKLLVTWV FT GPYRVMRADVHSFMVQHLITGAELDVHASRLKFYADSSLDVTEELLEHISS FT QGIILAVEKLKEHQWNDNIKDYEILVQWKGLEAIEDSYEPLTTLSRDVPKL FT VNQYVAAADQELKAHWQRVTMTGDQQLQEPIVATEMVRPTDMSRRRSSRRR FT KQPRSTTTTTTQASDKGDTVAATLQTSSDRPGLENNQPDANTPKRLTQVRA FT EDQGVSRRTRSQTARAD" XX SQ Sequence 5308 BP; 1349 A; 1358 C; 1457 G; 1144 T; 0 other; aagaattctt tagtggtact gacgtactac tcgctcaagt ggtacgactc gacctactag 60 ccgaccgtga cctgtcgtca tgccgaaacg ccgcgctgat gattcaagtg acgaggagga 120 gtcctccgaa tactcgaagc cgatgcctgt acccatcttc gcgccgattc tcccaccaag 180 actgagttcc atttctcaca aggcgttggt gaagtgggat aagctgcgca tggagtatga 240 ggccaagatg agagctcgtt gcagaagctc tggcgaggac tataacttgg tgacgcagaa 300 cgtaaaggaa tctttcgatc tccgtctcct agagacgttc tgtgcgctga gacttcggaa 360 ggacgttgtc gatgtcaccg aaggacaact catcgccgaa atcaagcatc tactagggaa 420 ggtcaagaac gatgacctac ccgacatcaa gaccctgtgc gcgaaggagc tacgaatgga 480 tctgtcggag acagacgtag atgcccgcgt actagcctat tttcagcgtt tccatgaagt 540 cgttctggag aacggacttg aagaagtttt ctccggtgat gatggtgaga aggagaagtg 600 caagcgtttg gtgtcgtgtt tggcccctcc ggtcctgaag gccgatgtca aaagtgccgt 660 tcgttggact aacaaggagg ctggcaaaag cattcaaaag ctgtacacgc tgatctatga 720 gaaggctgtc gaacacgagc gtcatttcca gcaaaacaag cggatgcgac tgatggtgaa 780 ggacaagatt tcactgccta agtccgcgaa gaacgttgag aagtcgacta cggctcattc 840 gaagaagccg cctcgtaatg actctggtaa gcgattcttg tcgaagaaga ccgacacgaa 900 ggttgagaag aagatcgacc agaagactga caagaccttt aagccgtcta tctcgcgcaa 960 ggagccgccg tcgccgtgcc cgaagtgcca agagatgcac tggctcagcg attgcacgaa 1020 ggcaaccgac gctgagaaga tcgtgcttcg gcagaagctt cgcgaagcta acaaagctcg 1080 ccagtctcgc gtgaagagat tgaaagagtt gatgccgccg acctcacgca ctgtgacaat 1140 caacggcgta ctggatttgc cgtgttgccc ggacactggt tccgactaca cggtgatcag 1200 ccgttcacag tggaaactat tgctcgacgt ggatccctcg gtgcaggaga ttccgttgga 1260 gacaccggtg tgcagccagt cgtatggtgc acacccagtc gtggctgaga agaaagccat 1320 gcttcatgtc ctgattcaca cggctgctgg gccggtgcag ccagtggaag ctgtgccgtg 1380 cctgattgtg gatacggacg acgacgaatt catcattggt caagacctgt tgatcgccct 1440 gggtatcgat gtggatcggc agcttgagca gcttgcctcc catcgcgaag acgacaccgg 1500 tggtgatcca tttgatttgg aggcggacga acgccccatg aacccaagtc atgtggcctc 1560 tgatgaagaa gttcgtgctg cagtggagac tctgattgaa agagccctgg agcataactt 1620 tccacccgaa aaagtggaca agttgcgaac catcgtgcac atgtatgatg tgtggcgctt 1680 ggaactccgt gacgatccac ctgctcgcgt tccaccgctc gaagtgcgtt tgaaggatgg 1740 ggctcaacca tgcaaatgta agcctcgcaa atatcctccg catgttcgcc aatttttacg 1800 tgaatttaac gaccaacttg tgacactagg atgggtctac gagaacccaa caagtcgctg 1860 ggcaagcccc gtactcccag tcaaaaagtc acaagagctc atggatttgc ggcaaacgac 1920 cgactaccgc gaattcaact caatgaccga catcatggct gcagtgatgc cgattctttc 1980 cttggtaatg gaaaatgcac gtggaaaaca acattttgga cttttcgact tcattaaggg 2040 tttctggcag ctacctttag ctgagtcctg ccaggagtgg ttatcctaca tgactgatga 2100 aaagatctac actccacgac gcgtcccaca aggctgtggc gacgctgcta tctatttcca 2160 aaaaacaatg gagacatgct ttgcgacgct actgtacaag cacctcctcg tgtggatcga 2220 cgacctgttg ctctacgcgg acgatataga cacttacctg ggcaaactcg atgagttatt 2280 ttcgctgctg aatgattttg gcctcaaact cagcgtgaag aagtccagcc tgtatcaaca 2340 ggaagtgaag tggtgtggca aaatcatcga cgccaatggt gtgcgccatg accccgccag 2400 gatcgactca ctccgtgcaa tgccgtaccc cagtacagca ggggagttgc agcagttcct 2460 atgtgcaatt aattggatgc gagagagtct cattgactat gcccgtcaag tctctccgct 2520 tcaacaccga ttagatgaag ctctggccaa gacacgacgc acgaagcgtg tggcagctgg 2580 aattttaatc gagcttagcg cagcagagag agctgccttt gacaatgtga aagacatgct 2640 agcctccgcg gctacgcttg ctttcccgaa cgactcggcg acaacatgtc tgctaaccga 2700 tgcttcggat attgggtggg ccgtcatcgt gacgcaagta aaggactttg acatcaaaat 2760 gcccgtccag gaccaacaac accaactcgt cgagtgttta agtggcacct tcacgggtag 2820 ccaactcaat tggacagtga tcgaaaagga agctttccct atcgcactgg cctgtgacaa 2880 gctggattat ttgctgctcc gaccgcaagg attcaggatg ttctgcgatc atcgcaactt 2940 aattcacgtg tttgctcctg acgagaatgt caaaaagcac gtgaaaggca agttgttgcg 3000 gtggtccatg aagttgatga actacaacta tgtgatcgaa catatcgccg gcccgaacaa 3060 cgtctgggcc gacatgatca gcaggtgggc tggcaaccac gttccagtca ccagcaggat 3120 cagcaggatt cgtactgaca caccagcggc gccaagcgct gcatctcaac aggaactagc 3180 cagggaggtg acggggccga tcatctcgac gctccgccct cttgatgacg acaatttcat 3240 ttggccgact tttgtggaga ttattctggt gcagtcacgt tatgaaccgc catctggagc 3300 cgtgcgtacc gacgacgacg tattcacgct ccgcgaccga atttggatcc ctactgaagc 3360 tagtgatctc attttacgac tattcatcat tgcacactgt ggtgctcaag gccaccgtgg 3420 tcacgccgcc atggtggagc accttcgacg attgtttgcg attgagaagc tcaacaccct 3480 ggcgtccacc tttgtccgcc agtgccggct gtgcctgcat tcaaaagggg ggaacatcat 3540 ccccagacct tggggtgaaa caattgattg ttgtgaacgc aatggagttt tacatttcga 3600 tttcctgttc atgggtgaga gttttggcga ctccaagtat atcctagtgc taaaggatca 3660 tgcctcgcat ttctgcgagc ttgtcgtggc agatacagcc gacagtacgg tgaccgtgga 3720 ggcgttcctc gcctggcact ctcgttttgg cctgccacca gtttggatct cggaccaagg 3780 atctcatttc aagaacgaag tggtgagtga gctgtcgcgc aggctgcgta cgcagcagca 3840 gttcaccccc gcctattgcc cgtggataaa cggctcagtg gagcgcgtga accgggatat 3900 actccaggtg atcaggacaa tgatactgga gtacaagatc aaccacagcg actgggtgta 3960 cctggtgccc atggtacagt ccagcctcaa tcacactgca gtaccttcgc tcggccacaa 4020 agcgccagtg gagctgttta ctgggctacc gtgcccgaca cctctcaaag aattctacct 4080 gcctggttcg ggggagttca aggaggtgcc agcgagtgac aagattgatg actttctcgt 4140 caacctgcga agcagtattc aagacatgca taaggccgtt gaagagcaac gactgaagca 4200 gagactgctg aacaagaagc gggagcgagg agagaacatg gtgaacttca tggaaggtga 4260 ttatgtgtta cgctcacgag tggacgaaaa gaacggcaac aagctgctcg tcacctgggt 4320 agggccgtat cgcgtgatgc gcgccgatgt acactctttc atggttcaac atctcatcac 4380 gggtgccgag ttggacgtgc acgcctctag actgaaattc tatgcagact ccagcttgga 4440 cgtgaccgaa gaactgctcg agcacatctc gtcccaagga atcatcttgg cggtggagaa 4500 gctcaaggag catcagtgga acgacaacat caaagactac gagattttgg tgcagtggaa 4560 gggactcgaa gcgatcgagg actcttacga accactgacg accctgtctc gagatgttcc 4620 aaaacttgtg aaccagtatg tagccgccgc ggatcaagag ctgaaagcac actggcagcg 4680 tgtgactatg actggagatc aacaactaca agaaccgata gttgcaactg aaatggtaag 4740 gccgacggac atgagtcgcc gaaggtccag ccgtcgacgg aagcaaccgc gttcaactac 4800 aactacaact actcaagcgt ccgacaaagg tgacaccgtc gctgcaacat tgcagacgtc 4860 gagtgatcga cctggacttg agaacaacca acccgacgcg aacaccccga agcgcctgac 4920 acaggttcga gctgaggatc aaggtgtaag ccgtcgtacg cgttcacaga ccgctagggc 4980 cgactgactg gcgagcgaga agtgatcgta caaccaatgc tgaagaccct tcaggcgtgg 5040 tcatggccag gcatggatct gactgccatg gctgcaaatg gagaaggtga cgaagcggcg 5100 gaatcaacca atgctgaaga cccttcaggc gtggtcatgg ccaggcatgg atctgactgc 5160 catggctgca aatggagaag gtgacgaagc ggcggaatca accaatgctg aagacccttc 5220 aggcgtggtc gtggccaggc atggatctga ctgccatggc tgtaaatgaa gaaggtgatg 5280 aagcggcgga accaagcttt gggggctg 5308 // ID Gypsy-36_PIT-I repbase; DNA; PLN; 7813 BP. XX AC AATU01001299; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_PIT_; KW Gypsy-36_PIT-LTR; Gypsy-36_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7813 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001299; Positions 67925 60113. XX CC Positions [6133-6660] - Integrase core CC 'CTAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 227..1654 FT /product="Gypsy-36_PIT-I_3p" FT /translation="MTTRSRRASGASSTTTTQKPSTRASTRRETATATTSA FT ETTRRARSEPRQGYAADAATGSSGDAALLTALNRMMSTVTNLESRIAGMGR FT RQPTTQTTEAARRAPRRTFRVPEGPMDSLSPHGIRQVPEVPDSVTAGQASR FT TRTATRTSSGAPPDGRDDSSSSSSDSDDREYGASYSSGDDGNEDSTSDQRS FT NSGEHRRRRRRRAARAEEGRRRRRRERRRKRKNPKDLELTAYKPSPTVSVS FT TWIAKVDLAVEGSRISGRADWTDEELYYIVGNKLVDDAATWWAQMDQELAG FT TDKTWTRLKSALIRRYGERPDQAMAEWRVYQRMMYPGETFADFAAGLRVAT FT GPNHVSERTLLAQLYRNLDKTTRMLVKQEPVPMTLEQAVDKATAIDDPMDN FT VAQGMMNIGQAWATAPNAYAIPMNGTLNNVAIDPGVGIGAEATTEKLAAQT FT GVHNAELAYFTNPQGVYNKYTGTWDVPDGRS" FT CDS 2958..4106 FT /product="Gypsy-36_PIT-I_4p" FT /translation="MELGTWAEDGLPTTLMDVGGERWPVKWDSGARYSVAG FT TDWMMRGEGTRRPAPVDVVEGIGGFLPDVIGVWTSEMRNSFGQTVTIEACV FT IDGCTDEFLVGVDFLKQHKAVLDFIRNEVRYDERKGKVVIPFRTEDSDGRI FT KVAPVRLAQRARLTRSAVAVVEVAVEAPDGEEGLFVPTVPCGSVMMATTLA FT KSKNGKALVPVINVQGGRVKLPCREEPGKWIPLEHDMQTLAMSGAIDRDKL FT DEWLHELGDTVTPLENEDEVRIGEEDSESRALVIKLLRAYRKVSAENGDCP FT PVTALDVQHHIDTGHESPLMLKRRRHAQLEDAIIEENVRKMLKAGVIEEGN FT GAWGFPVVLVRKKDGEVRFCIDYRALNKITKKDNLSSSPN" FT CDS join(4027..5367,5371..7812) FT /product="Gypsy-36_PIT-I_1p" FT /translation="MAKYDFVSTTEHSTRSRRKIIYPLPRIDETLEALGGA FT RLFTTLDLRSGYWQVGMAPEDQDKTAFTTKQGLYRFKRMPFGLMNAPSTFQ FT RMMNGVLRGLSWLSCLVYLDDIVVFTRGGIERHVVELATVLERLSAAGLTL FT KLKKCVFATKSMGYLGHELSCDGVRPVQRLVSAVAEFPRPEDAVAVKRFVH FT LAGYYRKFIEAFGSIVAPLTRLLKKDQEWSWTEDKEFAFERIKAALTTKPL FT LVYPDFTLPFRLVTDASTFGLGACLMQDQGRGWHPIAYASKVNSSVESNYS FT ITELECLAVVWSVKLFRPYLYGRVFEIITDHSALKWLMTRPNLAGRLHRWS FT LTLQEYEFEIVYRPGATNVVADALSRAPAAILIAVGERRRREHAGVRAPDS FT VIAAETKTEDDDLPVVMNARTEPGGEATTAAMVDPMMEEVTVAASNGQRKG FT AEAAKKRVRWADDRPLTRAAKKRLDAAAAAPPLPEVTPGTMATTAAQVALP FT GPTWTPTEPLQRNTMVIPAQTVIGTAREGAATTRPYTGRDLRLDSNEATAR FT TKRKRKSVTTKRKNTRPTEVMRHEDELGARTLRAPLTEGEDAAPRSATLQV FT TDAELVAAQRRSKLVQQLLKDGVYKGMKVTETYGLVTIDTRQGRRIVLPPA FT SLAVIFKTMHGSVWAGHLRGPHTYGRGSQLYWWPNLQREVNQWVRGCQERG FT SRKARPREVIPPLRSIRAGDVGDRWALDVAGPFPVANSGDRYVIAAVEYVT FT RYAVAKCTTQHSAESVASFLMEDVVLKFGVFRELLTDGAPELAGKGIEQLT FT EMLQAQQINPVPYRPQMIGLVERFHRSWKDCVATFMANDAQNDWNLWVKFA FT VYAYNSARHSTVALTPNELMMGRKRRAPNELLRQMELTEAGGLMPDHRKLV FT EAMKHECAEAARLKEQRRQARYYDRKVRQRRTFVVGDRVWLYNPPRGLNAT FT KYVHQWMGPMRIVELAGYDNVVLQREDKVGAPETLLAHVSFLASYHEPAPF FT LQKAAADLDAQLADEDESAVSDDTSARAPVLAATVASSAVKARRTPKRHRE FT ATNRARSAIDAGERLVETRRRRIRNKVGQYELQYELRPLDFVREWTDVQGR FT VVAIGETGGGQDDASNGRIASSVDGRVGAIDERIDGVGMYDKRVERDGMDD FT DCDGGVGLDDERYVRDGWNVERRARAGTDGEWRAQVGTDAERTVVNVRRNG FT GRMSVSDGVRSERMKRTLHDAERVWVSAVEYDHLLRDDRVVEDPINSAEEL FT " XX SQ Sequence 7813 BP; 2145 A; 1716 C; 2598 G; 1354 T; 0 other; tggtggtcat acaggggcta ataaaaggac acgaacgata tcaacaagta caacgaccct 60 tacgtgagcg gcgaagcgtt cgaggtacag acggatacga ttaaagtaac cttacgtgat 120 caaggagtca gacaagttac aaaaagttac agagggtata atttcgtacg gctacacaaa 180 taacagtgat ggcgagaagc aaaaaaaaac ggcggcaccg ggaggaatga ctacacgatc 240 aagacgagcg tcgggcgcat caagcacaac tacgacgcag aagccatcaa cgagagcttc 300 aacgagacga gagacagcga cagcaacgac gagtgcggag accactcgta gagcaagaag 360 cgagccccga caagggtatg cggcagacgc agcaacagga agcagcggag acgcagcact 420 actaactgca cttaaccgga tgatgagcac cgtgacaaac ttggaatcga ggatagctgg 480 tatggggaga cggcaaccta caacacaaac gacagaagca gcacggcggg caccacgaag 540 aacgttcagg gtacccgaag gaccgatgga ctcgctgtca ccacacggca taaggcaagt 600 accggaggtg ccagactccg taacggcggg acaagcttca agaacgagaa cagcgacaag 660 gacatcgagt ggggcgccac cagacggacg tgacgacagc agcagtagta gtagcgatag 720 tgatgacaga gagtatgggg caagctactc ctccggcgac gatggaaacg aggatagtac 780 gagtgaccag cgatcgaaca gcggcgaaca ccgacgacgt cgacgacgca gagctgcacg 840 ggcggaagaa ggtagacgac gaagacgacg agaacgcaga agaaagcgca agaatcctaa 900 ggacttagaa ctgactgcgt ataagccatc accgacagta tccgtgtcta cttggattgc 960 taaggtggac ctggcagtgg aaggctcacg aatctcgggg cgagcggact ggacggacga 1020 ggaactctac tacattgtgg gcaacaagct ggtggacgac gcagcaacat ggtgggctca 1080 aatggaccaa gaactggcag gcaccgacaa gacctggacg agacttaaat cggcgctgat 1140 acggcgatac ggcgagcgac cggatcaagc aatggcggaa tggcgagtgt atcagaggat 1200 gatgtaccct ggcgaaacgt ttgcagactt tgcagcgggg ctacgagtag cgaccggtcc 1260 aaatcatgtg agcgagcgga cgttgctagc tcagctctac agaaacttgg acaaaactac 1320 gagaatgctg gtgaaacaag aacctgtgcc aatgacgctg gagcaggcag tagataaggc 1380 tacagcaatc gatgatccca tggataacgt agcgcaagga atgatgaata ttggccaagc 1440 ttgggcaacg gcaccgaacg cgtacgcgat ccccatgaac ggcacattga acaacgttgc 1500 gattgatcct ggagttggta ttggcgctga agcgacgacg gagaagttag cggcgcaaac 1560 gggtgtgcac aacgcggagt tagcgtattt taccaatcct cagggcgtct acaacaagta 1620 cacaggcacg tgggacgtac ctgacgggcg gtcgtgatat ggtcggtact ggcagccgac 1680 gaagaagcgc ttggcgaggg cgcaacgcga cgagcgtcag aacagtacac gagaaaccga 1740 gaagaaggcg aaagtccgag tgacacgacc agtggaggag ttcagcgacg aatcggaaga 1800 agagttgtcg gagcctctac cgcagcggaa aaacagaaag cggtggtgcg gaagacggtg 1860 gcaccagaaa cagcagcgaa aacggagtcc atcagagctg atccggctcc gtgggcgacc 1920 cgctcaactg gtgcagacat gaggtgctac gcgtgtcgag aattcgggca cttcgcgcgg 1980 gagtgtccga atgcggaggc caaggcacag aacgatgcgt tcttagcgtc acgggcggca 2040 gctaagaacc aatcaacgga gggaaacgtg gaacgggcgt agtgagggga tcactacgtc 2100 cgaaagagcg actgattccc cagatagcca caccaagaag ggggctagcg acggagacgc 2160 gagacggtgg gcagctggag agtcgacgag gacgagcagt cagtggtgga catgtggcgg 2220 cggaaccggg agacgacggg acgaaagaga aacggtcggt aggcgagatg gcggtaaacg 2280 acgagagtgt ggtggcggcg aggcgagtaa tgctcactca attggacgat gatactggag 2340 gacgagatga agaccgggcg cgacggtatg tggccacggt gcggcctgaa aaggcagcac 2400 tgcgctacgt ctatcccgca atggcagaga gcggaactcg aaaaaacgaa ggcaacaaga 2460 agactcggca gagtgagact gaggaaggcg gcgtacttgc agcagtcagt aagtcgtcta 2520 ggactgagga aggcggagcc ggtaccgagg caaacagtga acaacgagct gaggaaggcg 2580 gaggtagcag cgtggatacc gaggcgaaaa cgactgcatc gagcagtgtg gggcgcgtga 2640 ccagccccga cgaagaagtg gcggaatacg tggccaaagt gaggaaggcg gcgagacaac 2700 agaaacgtag ggcgaagcaa agacgtgtgg aagcggccaa gttaaggagg cggcaatcga 2760 cagtgaatga agaagtggac gtagcagtgg cgacccttaa tagtgaacga cgtgaacgac 2820 gcgaacgtca gcgcgacgaa gcacgggccg cttaagaacg gaggctccca cgctgcaaga 2880 gaacgaatac ccgaggtggt gacggcggat gtgctaaagc acggttggtg cagcgccggc 2940 agacagaggt aggagcgatg gagctgggta cgtgggcgga agatggactt ccaacgacgt 3000 tgatggacgt aggaggtgaa cgttggccgg tgaaatggga tagcggcgct cggtactcag 3060 tagcaggcac ggattggatg atgagaggtg aaggcacgag acgaccggcc ccggttgatg 3120 tggtagaagg catcggtggc ttcttgccgg acgttattgg ggtgtggaca tccgagatgc 3180 ggaattcgtt cggacaaacg gtaacaattg aggcgtgtgt catcgacggg tgcacggacg 3240 agttcttggt gggcgtcgac tttttgaaac aacacaaagc ggtattggat ttcatacgga 3300 atgaagtacg atacgacgaa cgtaagggca aagtcgtaat accgtttcgg acggaggata 3360 gcgatggcag gattaaagtg gcaccggtga ggctagctca gcgtgccagg ctcacccgta 3420 gtgcggtcgc agtagtggaa gtggcggtgg aagctccgga cggagaagaa ggactcttcg 3480 tacctacggt accctgtgga tctgtcatga tggcgacaac gctagcaaag agtaagaacg 3540 gcaaagcatt agttccagtg ataaatgtgc aaggtggcag ggtgaaacta ccatgccggg 3600 aagaaccggg caaatggatc ccgctggagc atgacatgca aacgttggcg atgagtggag 3660 cgatcgatcg tgacaagttg gatgagtggt tacacgaatt aggagacacg gtgacgcctt 3720 tggaaaacga ggacgaggtt cgaatcggtg aagaagactc ggaatctcga gcgttggtga 3780 taaagttgct acgagcgtat cgtaaagtgt cggcagagaa cggggactgc cccccagtca 3840 cggcactaga tgtgcaacat catattgata ctggacacga gtccccacta atgttgaaac 3900 gacgacggca cgcacaattg gaggatgcga ttattgaaga aaacgtacgt aagatgttga 3960 aagctggtgt gatcgaagag ggtaacggag cctggggttt tccggtagtg ttggttcgaa 4020 agaaagatgg cgaagtacga ttttgtatcg actacagagc actcaacaag atcacgaaga 4080 aagataattt atcctcttcc ccgaattgat gagactttgg aagctctggg cggtgcacga 4140 ttgtttacca cactagatct acgctccgga tactggcagg taggcatggc accagaggat 4200 caagacaaga cagcgttcac gaccaaacag ggactttacc ggttcaagcg gatgccgttc 4260 gggctgatga atgctccctc gacatttcaa cgaatgatga acggcgttct acgaggattg 4320 agttggttgt cgtgcttagt gtatctcgac gacatagtgg tgttcactcg tggaggcatc 4380 gagcgacacg tagtggagct agcaacagtt ctggagaggc tttcggcggc aggtcttaca 4440 ttgaagctaa agaaatgtgt attcgctact aaatcaatgg ggtatttggg gcacgagttg 4500 agttgtgatg gagttcgacc ggtgcaacgc ttggtgtcgg cagtggcgga gttccctcga 4560 ccggaggatg cagtagctgt caagcgattt gttcacttgg ctgggtacta caggaagttc 4620 atcgaggctt ttggatcgat agtggcccca ctgacacggt tactaaagaa ggatcaagaa 4680 tggagctgga cggaagacaa ggaatttgcg tttgagcgga taaaagcggc actgaccacc 4740 aagcccttac tcgtctaccc agattttacg ttaccgtttc gactcgtaac ggacgccagt 4800 acattcgggt tgggagcttg tttgatgcaa gaccagggtc gaggttggca tcctattgcg 4860 tatgcgagca aagttaacag tagtgtggaa tctaactact cgattacgga gttggaatgt 4920 ttggcggtgg tttggagtgt gaagttgttt agaccatacc tttacggacg ggttttcgag 4980 attattactg atcattcggc actcaagtgg ttaatgacga ggcctaactt ggccggtagg 5040 ctgcacaggt ggtccctcac gctgcaagaa tatgaatttg agattgtcta caggccaggt 5100 gcgacgaatg tggtggctga tgccctctct cgggccccag cagcgatttt gatagcagtt 5160 ggtgagcgac gacgacgtga gcacgcaggg gttagagccc ctgactcggt gatagcagca 5220 gaaaccaaga cggaagacga tgacttgcca gtggtaatga acgcacgaac ggaaccagga 5280 ggtgaagcaa ccacggcggc gatggtggac ccgatgatgg aagaagtaac ggtggcagct 5340 tcgaacggac aacgaaaggg cgctgagtag gcagcgaaga aaagagtacg gtgggcggac 5400 gaccggccgt tgactcgtgc ggcgaagaag cggcttgacg cagcggcggc agcaccaccg 5460 ctaccggaag taaccccagg aacgatggca acgacggcgg cacaagtggc gctacctggg 5520 ccgacctgga cgcccacaga gcctctacaa cggaatacga tggtgatacc ggcgcaaacg 5580 gtgataggaa cggcgaggga aggcgcagca acgacacggc cctatacggg gagagacctg 5640 cggttagact cgaatgaagc gacagcacgt acaaaacgga agcggaaatc ggtgacgacg 5700 aaaaggaaaa atacacgccc tacggaggtg atgcgacacg aagatgaatt gggggctcga 5760 acactgcggg ccccgttgac ggagggtgaa gacgccgcac cacgtagcgc gacattgcaa 5820 gtaacggacg ctgaattggt agctgctcag cgacgcagta agctagtgca gcagctgctg 5880 aaggacggcg tatataaggg catgaaggtg acggagacgt atgggctggt gacgatagac 5940 acgcgacaag gaagacgaat cgttttgcca cctgcttcat tagcggtgat cttcaaaacc 6000 atgcatgggt cggtgtgggc tggccacttg cgaggaccgc acacatacgg ccggggctct 6060 caattgtact ggtggcccaa cctccaacgc gaagtgaacc agtgggtaag aggatgtcag 6120 gagcgcggaa gccgcaaggc tcgaccacgc gaagtaattc cacccttaag atcaatacga 6180 gctggagacg tgggtgacag gtgggcgtta gacgtggctg ggccgttccc ggtggcaaat 6240 agcggtgacc gatatgtcat agcggcggtg gagtatgtga cgcgttacgc tgtggcgaag 6300 tgtacaacgc agcactcggc ggagagcgta gcgtccttcc tgatggagga cgtagtgcta 6360 aagttcggtg tgtttaggga attgctgact gacggtgcac cggagttggc gggtaaaggg 6420 attgagcaat tgacggagat gttgcaggcg caacaaatca acccagtccc ttatcgacca 6480 cagatgatcg gcttggtgga gcgcttccac cgctcctgga aggactgtgt tgcaactttc 6540 atggcgaatg atgcccaaaa cgactggaat ctgtgggtaa agttcgcggt ttatgcgtac 6600 aattcggcac gacattcgac ggtggcgcta acgccaaacg agctcatgat gggcaggaaa 6660 cgcagggcgc ctaacgagct attacgacaa atggaattaa cggaagccgg agggttgatg 6720 ccggatcacc ggaagttagt agaggctatg aaacacgagt gcgcggaggc ggcgagattg 6780 aaggagcaga ggcgtcaggc gcgctattac gacagaaaag ttagacagag acgtacgttc 6840 gtagtgggtg atcgagtgtg gctgtacaat ccccctcggg gattaaacgc gacgaagtat 6900 gtgcaccagt ggatgggacc gatgaggatt gtggagctgg caggctacga taacgttgtg 6960 ctacaacggg aggataaggt cggcgcgcca gagacgttac tagcacacgt ctccttctta 7020 gcgagctacc acgagcctgc cccattccta cagaaagcgg cggcggattt ggacgcccag 7080 ttagcagatg aagacgaaag tgcagtcagc gatgacacgt cggcaagagc gcctgtactt 7140 gcagcgacgg tggctagcag tgccgttaaa gctagacgaa caccgaagag gcaccgagag 7200 gcaactaacc gagcgaggtc agccatcgac gcgggtgagc ggctggtgga gacgcgaagg 7260 cggcgaatcc gaaacaaggt gggacagtat gagctgcaat atgagctacg acccttggac 7320 tttgtacgag aatggacgga cgtgcaagga cgagtggtgg caattggtga gaccggtggt 7380 ggccaggacg acgcgagtaa cggacgtatc gcgtcgagtg ttgacgggcg ggttggagcg 7440 atcgacgaac ggatcgatgg tgttggaatg tacgacaaac gggtcgaacg tgatggaatg 7500 gacgatgatt gcgacggagg agttggtttg gacgatgagc gatacgtacg agacgggtgg 7560 aacgttgaac ggagagcaag agctggtacg gatggtgaat ggagagcaca agttggtacg 7620 gacgctgaac ggacggttgt gaatgttagg cgtaacggcg gtcgaatgag tgtgagcgat 7680 ggagtacgga gtgagcggat gaaacgaacg ttacacgatg ccgaacgcgt gtgggtgtct 7740 gctgtcgagt atgatcacct actccgagac gatagggtcg tggaagaccc tattaatagt 7800 gccgaggaac tcg 7813 // ID Copia-3_PSo-LTR repbase; DNA; PLN; 273 BP. XX AC AAQY01000249; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PSo_; KW Copia-3_PSo-I; Copia-3_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-273 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000249; Positions 333179 333451. XX SQ Sequence 273 BP; 66 A; 78 C; 68 G; 61 T; 0 other; tgtcggagcg tgctacgctt taagcgaagt gcggcacaag tatcagccga cagtagcact 60 ggacaccgcg tcatcatatc tagggccatc ttctctacgt caaggaggtc aggcgtctca 120 gagatcaagc tgcacgaagg taagacacag gacgaactcc agggctgcgc gcaggtaggc 180 ggctaggcag ctttgcataa ctctcaattg aattcacttt tcctttcacc gtcttccgct 240 caagtgcctc tcaagcttgc taaccactcg aca 273 // ID Copia-7_PSo-LTR repbase; DNA; PLN; 262 BP. XX AC AAQY01000773; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PSo_; KW Copia-7_PSo-I; Copia-7_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-262 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000773; Positions 4457 4196. XX SQ Sequence 262 BP; 61 A; 54 C; 74 G; 73 T; 0 other; tgttggaatg cgtattgcag gctgtcttca actgcattga agttcaagat gaaggccttg 60 ggaccctgcg agcctggata agagcagcag cgctgtgaag tatagtgaaa ctaagtatgt 120 agggtctatg tatgagaagc tgctgaagcc tgcttaagta gttgacgggg gctgcagcac 180 taacagtcga tttactttct ctttcatctt tctcccccga gtgttggctg gtggccatac 240 ggatcgagtg cgacttctaa ca 262 // ID Gypsy-1_PIT-I repbase; DNA; PLN; 4862 BP. XX AC AATU01000341; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PIT_; KW Gypsy-1_PIT-LTR; Gypsy-1_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4862 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000341; Positions 31031 35892. XX CC Positions [3428-3943] - Integrase core CC 'GGTGT' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS join(32..2251,2255..4588) FT /product="Gypsy-1_PIT-I_1p" FT /translation="MKKPDRRGKTVEDDAPLASDISTVGVPLLIPVVAPRL FT SSMSHSALIKWKKARAEYEESVKARSKGDDELYERLKETIKSTVDERLLKA FT LCTYRRGGIAPNAVTDDQITSEIQAIVERVINDTLPDIDMLFGKKLRLNMS FT ETDVNERVLQYFMLCNELIEEHGLVTCFEGQHGQKEKCKLLIESLTPSELK FT ADVQTAIRFQSTEARSDELKLHDLILEKALEQDRDFRRRKRSRNEERFARS FT EKVPKLQDHKSLSDQHGRRQRGTHESKGGDVNRATRSVVNQDSEKKRPLVP FT KDGCLKCSGPHYVSNCPTASPEEKKELPKKFHTSRHDKSRMKRIKKRLGGV FT NTITLNDVYDLQYCADTGSDRCLLSRNNFNELMRLDDNVKSVPLSTPVIGK FT AVGGHDVEARESVLLAIRLHTAAGPVELAEPVNCLMIEQNDDEFIVGNDVL FT LSLGINVDRQLEQLAGGKLNDDEDPIARDDEFRPGHANDLDIQGGLAKRLT FT AALDNGFPMKFMKELRRIAKKHDIWRLVLCGDPPAKVPPYKLRLKQDAKPF FT RCKARQYGPLQSAFLKEFNQTLVNLGWVYKNPSSHWACAALPLKKPKVNEF FT RQAVDYKPLNAMTEAIAGVMPNLKTKLERLKGKKHYGLFDFIRSFWQLAVA FT IECREQLSYMTDEGVFTPTRVMQGSCVSALHFQVSMENCFAELLDHNLLIW FT IDDLLLYSDTIESYLVALKRLFDLVNEFGLKLSLKKSSLYRSVTWCGKVID FT ENGVRHDPKRIDGLTSMPVPVTAGQLQQFICATNWMRDSLVDYARTVRPLQ FT SLLDRALAGNRKTKRVASGISIALDDDELRSFELVKKLLQSSAMMTHPREQ FT ATYCLFTDASDYGWASVLTQVGEWKQGVAITEQEHELLVCKSGSFTGAQLH FT WSVIEKEALPIVLSCEDLDYLLLRPGGFKVFCDHRNLVHVFAPGQEVKKHV FT RGKLLRWAVKLMEFRYTIVHIEGVNNLWADMLSRWGGAATPTASTTTKPSL FT KRVTRSQTNVSRKPLLRPLDQENFTWPTLSEIAATQAAHVASAPTASAADG FT HGVYRLDGYIWIPTAATTLIQRLLIIAHCGAQGHRGEAVVLNHIRRVFSIE FT GISALVRRFLRSCLLCQHVKGGRVVLRPWGELYRSDIRNGALHWDFLYLGD FT GFGSCKYLLLLKDNFTHFCELIACDTPTSEVAVDGLLGWHSRFGVPPVWVS FT DSGSHFKNQVLAELCKRLKCEQQFVVAYSPWINGSVERANRDILQVLRAMI FT MEYKISHNDWIYLIPLVQSNMNHSPVASLANKAPVEVFTGLPCPAPAYILH FT VPEEQPKAVYISSAVIENSLAKLRSSIEDMHCAVKDKREKNTLLNKRKSRG FT AQEVNFSAGDYVLRSRVDERRHNKLLVTWIGPYVVTRADSHSFRVRHLVTG FT KEQDVHASRLKFYADSDLEVTEELLEHVASQGIVLKVDRLNKHRWNEQNQA FT FELLVSWCGLEPIEDSWEPLKSLAQDIPVLIRTYVEAAEDAKLATALQKLT FT SS" XX SQ Sequence 4862 BP; 1227 A; 1126 C; 1316 G; 1193 T; 0 other; aagtcgactt tagtgaaccc acgttcacac gatgaagaaa ccggaccgtc gcggcaagac 60 agttgaagat gatgctccat tggccagtga catcagcacc gttggtgtgc cgttgctcat 120 tccggtggtc gcgccccgac tgtcgtccat gtcccactct gcattaatca agtggaagaa 180 agctcgagct gagtatgaag agagcgtgaa agctcgcagc aagggtgatg atgaactcta 240 cgagcggctc aaggaaacaa ttaagagtac cgtcgacgaa agactgttga aggctctctg 300 tacctaccgc cggggcggaa ttgcgcccaa cgctgtgacc gatgaccaaa ttacgtcaga 360 aattcaggcg attgtcgaac gtgttataaa cgacacactt cccgacatag atatgctttt 420 tggtaagaag ctgcgtctta acatgtctga aacagacgtg aacgagcgcg tgctgcagta 480 cttcatgctt tgcaacgaac tgatcgaaga acacggtcta gtgacctgtt ttgaaggtca 540 gcacggtcaa aaagagaagt gtaaactgct tattgagtca ctgacgccca gtgagctcaa 600 agcagatgtg caaactgcta ttcgtttcca atcgacggag gcgcgtagtg acgagttaaa 660 actccatgac ctgatcttgg aaaaggcgtt ggagcaggat cgcgactttc gccgtcgcaa 720 acgttcacgc aacgaggaga ggttcgctag gtctgagaag gtgcccaagc tccaggatca 780 taagagtttg agtgaccagc atggccgtcg ccagcgtggc acacatgaat ctaagggcgg 840 ggatgtcaat cgagcgacac gatctgtagt aaaccaggac tcagagaaga agcgacctct 900 cgtaccaaaa gacggatgtc ttaaatgcag tgggccacac tatgtgtcga attgcccaac 960 tgcgtctcca gaggagaaga aggaattacc gaagaagttt catacctctc gccatgacaa 1020 gagcaggatg aagcggatta agaagcgtct gggtggagtg aataccatca cgctgaacga 1080 cgtgtatgac ctgcagtact gtgcggatac aggctcggac aggtgcctgt tgagtcggaa 1140 caacttcaac gagctcatgc ggctcgacga caacgtgaag tctgtcccgt tgagcacacc 1200 agtgattggg aaagctgttg gcggtcacga tgttgaagcg cgtgagtctg tactgctggc 1260 aattcgtcta catactgctg ctggacctgt ggagctcgca gaacccgtca attgtctcat 1320 gattgagcaa aacgatgatg aatttatcgt cggcaacgat gtgctgctct ctcttggaat 1380 caatgtggac agacaactcg agcaacttgc tggtggtaaa ctcaatgacg atgaggatcc 1440 cattgcgagg gatgatgaat ttcggcctgg tcatgcaaat gaccttgata tccagggagg 1500 ccttgcaaaa cggctcactg ctgcactgga taacggtttt ccaatgaaat tcatgaagga 1560 attgcgtcga atcgctaaga agcacgacat ttggcggcta gttctctgtg gcgaccctcc 1620 tgctaaggtg ccaccgtaca agcttcgctt gaagcaggat gcaaagcctt tccgctgcaa 1680 agctcggcag tacggaccct tacagagtgc gttcctgaag gagttcaacc agactctagt 1740 gaaccttggc tgggtttaca aaaaccctag cagtcattgg gcttgcgctg ctctgcctct 1800 taagaagccg aaggtcaatg agtttcgcca agcggtggat tacaagccat tgaatgcgat 1860 gaccgaagca attgcaggcg ttatgccaaa cttgaagacc aagttggagc gattgaaagg 1920 aaagaaacac tacggtcttt tcgactttat ccgcagcttt tggcaacttg ctgtggcgat 1980 agaatgcaga gagcagctct cgtatatgac ggatgagggc gtgttcacgc caacccgtgt 2040 gatgcaagga agttgtgtct cggcgttaca ttttcaagtc tcgatggaaa actgtttcgc 2100 tgagctactc gatcacaatt tacttatctg gattgacgat ctcttgctct actctgacac 2160 tatagagagt taccttgttg ctctaaagag actgtttgac ttggtgaacg aattcggatt 2220 gaagttgagt ctgaagaagt cctcgttgta ctaacgctca gttacgtggt gtggtaaggt 2280 aattgatgag aatggtgttc gccatgaccc aaaacggatt gatgggctca cctcaatgcc 2340 agtgccagtc acagcgggac aattacagca gtttatctgc gcaacgaact ggatgcgaga 2400 cagtttggtt gactacgctc gcaccgttcg gccgttgcaa tcgctgttgg atcgcgcact 2460 tgctggtaac cgaaagacga agcgtgttgc ttcagggatc agcatcgcgt tggatgatga 2520 tgagctccgc agtttcgaac tggtcaagaa gctcctgcag agctcggcca tgatgacaca 2580 cccgcgtgag caggcaacct actgcttgtt tacagatgcg agtgactacg gttgggcttc 2640 ggtccttact caagtgggtg aatggaaaca aggagtggca attactgaac aggaacatga 2700 gctactggta tgcaagagcg gttcgttcac tggcgctcag ctacactgga gcgtcattga 2760 gaaagaggca ctaccaatcg tgctctcctg tgaagacctt gactacctgt tgctgaggcc 2820 cggtggtttc aaggtgtttt gtgaccaccg aaacctcgtt catgtttttg cccctggaca 2880 agaagtaaag aagcacgtac gtggaaaatt acttcgatgg gctgtcaaac tcatggagtt 2940 tcgctatact atcgttcaca tcgagggtgt caacaacttg tgggcggata tgcttagtcg 3000 gtggggcggc gctgctaccc ctacggcatc tacgactacg aagcctagct tgaagcgagt 3060 gactcgttca cagactaatg tttctcggaa gcctctgctt cggcctctcg accaagagaa 3120 cttcacgtgg ccgacgttga gtgaaatcgc ggctacgcaa gcggctcatg tagcctctgc 3180 tcctactgct agtgctgcag atggacatgg tgtctaccga cttgatggct atatttggat 3240 acctactgct gccacgactc tcatccagcg actcctgatc atcgctcatt gtggggcaca 3300 gggtcaccgt ggtgaagccg tggtcttgaa ccacattcgc cgtgtatttt cgattgaggg 3360 aatctctgct ctagttcgtc gtttcctgcg ctcctgcttg ctctgtcagc atgtaaaagg 3420 aggtagggtg gtgcttagac catggggtga gctgtaccgc tctgacattc gcaatggagc 3480 tttacactgg gatttccttt atttgggtga tggatttggc tcatgcaagt acctactact 3540 gctgaaggac aactttaccc atttctgcga gttgattgcg tgtgatacac caacaagtga 3600 ggttgcagtt gatggcctgc ttgggtggca cagtcggttc ggtgtaccgc ctgtatgggt 3660 cagtgacagt ggctcgcatt tcaagaacca agttcttgcc gaattatgca agcgactgaa 3720 atgtgaacag cagttcgtag tggcgtatag tccgtggatc aatggatctg tggaacgtgc 3780 aaacagagat atactgcaag tgctacgtgc aatgattatg gagtacaaga tttcgcacaa 3840 cgactggatc tatcttatac ctttggtgca atctaacatg aatcactctc cggtggcttc 3900 tctagctaac aaggcccctg ttgaggtatt cactggcttg ccatgcccag caccagccta 3960 catcctgcat gtacctgaag agcaacctaa ggcagtctat atttcgagtg cagtcatcga 4020 gaattctctg gcgaaactac gttccagtat tgaggacatg cactgtgccg tcaaggacaa 4080 gcgtgagaaa aacacgttgc tgaacaagag aaaatccaga ggtgcacaag aagtaaactt 4140 ttctgcgggt gattacgtcc tacgatcacg tgtcgatgag cgacgacaca acaagttgct 4200 agtcacctgg atcggtccct acgtagttac tcgtgcggac tctcattcgt ttcgtgttcg 4260 gcacctcgtt accggcaagg agcaagatgt gcatgcttca cgcttgaagt tctacgcgga 4320 cagcgacctg gaagttacgg aggagctact ggagcacgtc gcctcccagg gcattgtgtt 4380 gaaggttgac cgacttaaca agcaccgttg gaacgaacag aaccaggctt ttgagctcct 4440 agtgagttgg tgcggcttag agcccataga ggactcatgg gagcctttga agtctctagc 4500 acaggatatc cccgtgctaa tacgtaccta cgtggaagct gccgaggatg ccaagttggc 4560 gacagcttta cagaagctga cctcgagcta gagatcttca tgtgccaagt tggcagtcac 4620 agtgtgagca aagtcattac tatttcggca gttgctttga agtagtgaga cgcacaaggt 4680 cagtggcttg tgtatccatg actcaacctg tgtggttgta ggcatgcgga aaaatgaaat 4740 ttggattatg gtacagtgtc ccaaaatagt ggtacagtgt accaaactga cgttgcaata 4800 tagtaacttg taaataccca tattgcctat ttgcaagttg tgagcaaggc ttgggaggga 4860 at 4862 // ID Gypsy-52_PIT-LTR repbase; DNA; PLN; 279 BP. XX AC AATU01004844; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_PIT_; KW Gypsy-52_PIT-I; Gypsy-52_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-279 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004844; Positions 10412 10690. XX SQ Sequence 279 BP; 66 A; 79 C; 45 G; 89 T; 0 other; tgtcatgatg atgccccctc ctgactccag catctgctta cacaaccttt tttccaagcc 60 ttcactcccc gtttcgctct actgttcaac cagacgtaga tcgtgtacat gatgtgcttg 120 aagttgcatt catagttgag gtttagctac agggcagatg ctttccttct ctttgcttaa 180 acactcaatt cattcttatt ttttcctgct acaactcaag tcaagttcct acgactacaa 240 ctcaagcgga aacaagtgcg tctccacaac ttcgtgaca 279 // ID Gypsy-8N_PPa-LTR repbase; DNA; PLN; 2165 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Gypsy-8N_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-2165 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1040-1040 (2010). XX DR [1] (Consensus) XX SQ Sequence 2165 BP; 649 A; 333 C; 387 G; 796 T; 0 other; tgtgagctct caattatact ctaaaattta aatttttgtt attttcctat tttatgataa 60 ttaaacatgt tagattagga tttatataag tggaatttag ttttatagaa tttttaggat 120 tacaaccctt gatggtataa atcatagcct aattccttga attaggttaa ttaggactaa 180 agtgataaga gttagaaaat tagaatagca acttagttag tttaataatt tagaggttgt 240 tagtcattac tataagggtt gactaaaagc ctatgagtgc atctataatc attcacatga 300 tttaggagtt ggaattataa ttctctaaaa gatttaggga agttagcaat ggtaattttg 360 gattttcctc caaattcgac aaatttaagc ggcatggtgg ttcttctact taatgggagt 420 ctttttaatg caatggtggc accggattta cctcgtggag tgaagaaaac aagatcagca 480 acctctcctt caaaatacaa gagaagcaat gaaattctca ttttgaagaa tttcacaaaa 540 attgccaaga tccttgtaag taaaaacttc catgaaaatt ataattgagc atggattgag 600 gcatgtgagt agtcgatctt agcttaaaaa ggtgttttga acacaatagt gaagttagat 660 ttacaaaaaa aatgctttct tgaccactta caagagccat cagccttggt aacgagattg 720 gctcttggat gaatgaaggc cgtagatcta gattagggat cttaaaaatc aagggtggag 780 atgtagccac ccttctacga gcctccactc aattgtataa gagaggcttg gttttccaag 840 ccctctctct ctcctctttt gggtgaaggg cggagccatg ccaaaatttg gccgaaaccc 900 taatcttaat tttatttaga ttttaattct cattgtgaac cttgtgattg tgtatgtatg 960 gattttgcat tgtgaaggat ggtcattaag ttttaaaata tgtttcattg aggtagatat 1020 ctcctcggcc tttcaaatac cccaagggtt tcaagggcct cggattttct tcaatcagtc 1080 actcaatttc tgttgtttca atgtgagatt ctgaatagtt gtagcttttg ttgttagctt 1140 tccaacaaga taagacttgc ttgatttgga gtaagaagga atttttggtg aatttttgag 1200 tttgagggag tcgactgcct ttgcagtttg aatcaatcga gtttggaaag gcatttctca 1260 gtgcctggtg attggattta tttgaaattt tgggagcatc aagctttata agctaagctc 1320 tgaaaggcac aagttttggt gaatttgaag acaatctgaa tttttagtga atttctaagt 1380 gaagagggtt ggtcaccgcg gcagtttgga tcactcaact tcaaaggagg aattctcacg 1440 actggatcat tagattgcaa cgaagattgt tggatcaaaa gcgccttcaa gtcagccttg 1500 caacaagcta agaatcattc aaattgaagc cgattacaaa ttttggcaaa ttttggagta 1560 gaagggggtc gctgccttca atccttacgt gttgtcaagg taccttcgct ttcacctctc 1620 tcactttatt tttactatcg tcttcacagt gacttgtaag ctccacattt cactttttgg 1680 ctaataaatt ttaagtttaa cttttaacct ttaatattct cactttaact tttaacttta 1740 acttttaaac tgaactttta attttaactt ttcacttaac ctttaatctt aacttttaac 1800 ttaatttttt tacttaacct tttaatttta acttttaact taacctttta atcttaattt 1860 ttaactttaa ttttttttaa cttaactttt aacttagctt ttaattcaaa cttaagtttt 1920 tattcttatg gtcaattaat agtaataact tagttaatta tttttattgt gtttgcatag 1980 taaatttcat ttaacatgtt aatttaatgt tggtaaccat tgcttggaag gcctaaaact 2040 aattgaattt ttaatataaa gatttaaatt aatctaacaa ttacacaatt gggagctctc 2100 caattccacc tcttggactt gttgtgtggc ataggtttca tcaagtggtg aaatttggcc 2160 tcaca 2165 // ID Gypsy-13_PSo-LTR repbase; DNA; PLN; 261 BP. XX AC AAQY01000310; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PSo_; KW Gypsy-13_PSo-I; Gypsy-13_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-261 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000310; Positions 76719 76979. XX SQ Sequence 261 BP; 58 A; 74 C; 73 G; 56 T; 0 other; tgtcacggtt ctcccccagt cgacggtcta acactgctcc tggagtgttt gaacacaatg 60 cgtgcgctgg acagacagaa tgcaactact cgtgagtcac ctcatgcgtt ccgggtgtaa 120 cgcacaccaa agaggccagg atacggtagg tcggtgccac tgtggacccc gcgcagttgc 180 gttccactgg atactatggg agccgagccg tcggccgtgc gagtcagtcg tgatttttct 240 tcgtaagcaa caacagcaac a 261 // ID Gypsy-6_PIT-I repbase; DNA; PLN; 6959 BP. XX AC AATU01002470; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PIT_; KW Gypsy-6_PIT-LTR; Gypsy-6_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6959 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002470; Positions 36431 43389. XX CC 'GAAAT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 60..1043 FT /product="Gypsy-6_PIT-I_2p" FT /translation="MEHPVFANLPPAQQDALTKLMSLLGPEGVAHLASQGP FT EAVTARLESFSRYENALLEHVQEKMSAATAAASMTREESMRLKPLMVSVKT FT FEGKDGENLLLWTREVEMAMGSALLQSEHQRVALAVSRLGGRAREWALTCG FT TSVDAAFPTWDQLKQQLSRVFAPPNQAYRIRSKFLATRQGKKDLLDYVQEL FT RTLIAGMAVDPLPELVSVTVFMEGLRVSAARTEVFRVHPNSFEEAVDVALN FT AEHNFRSARPGWSAGSASSSSGPEPMDLSYAEDEEAELLAAEQRAGIRRCF FT VCNSTKHLRAYCPLRKKREAPASQPSGSSPGNGNSQ" FT CDS 1460..5833 FT /product="Gypsy-6_PIT-I_1p" FT /translation="MAWLERHEPWIDWKSKTLGASHPPPSGALMSHEPTSA FT RKQKRFWREHEAEAAVVLDIGMSEIVSNEVAVCPEGVRGAARYPRSGAGQV FT NDPLLGPGEDERGVARNPLSGMNLVDDLPLRDPRVAVDCESRHHGRGPGDA FT GEVTPSSLCEGQEPLGFQPSVFRDTVSSSRSDGAAAPGGGDGDVATPPSSG FT RARSRRERRRRRRASVTSSTSDDVSNVTSGDAPRDCCEQLYTLVNGVTGEV FT EGDISLDTLPAADALLELDEMSIAEFGEALKAGELAEVVLLGPEEELNSSS FT VVNDAVLEDTKKALSARSGSAILKDPSDPFYPVVKAYGDVVSKDPPTGLPP FT DRGVCHEIDLVPGTKYCVTRQWPLPREQCDVIDAFFRAKHEAGMVRESKSP FT HSTPTFCVRKPNGKWRIVHAFNKLNAATIPAQTPIPRKDVLQNNMVGCTLY FT SALDLVDGYYQLLMRASDIPLTAVSTPSGMLWEWLVMPQGLSNAPATFNRL FT VTQLFRPHRAYAQTYFDDIFVHSRAEHGKSDVDNHIDHLRAVLECMRTNKL FT YANLDKCVFGAEEIPFLGCFIGKRGLRADPAKVKAIVDWPVPKNQKDLRKW FT LGLANYLHKYSANYAEMARPLSDLLKKDAPWCWNVEHDGAFEAVKESLLQA FT PILALPDPDSPFSVVCDASDFAIGCALLQADAEGRERVIAFESRQLKAAEK FT NYPVHDKELLAMKYALVKFRVHLLGSKPFVIFTDHASLRTATQSPHLSQRM FT ARWLSFFAEYNFEVKYKPGRLNVVADALSRRPDYELAHVTTVTSSVPDLIR FT GAYAQDDMCVALLRALGSEEFKDSDKELSGRLRARLHRYSLDGGLLYYSTD FT AEDNPRVVVPHDEDLKYRILYEVHDTPVGGHLGREKTYGSVSSMYWWPKMY FT KWVGTYVRTCETCQRTKSAPSTAAPLASLPVPKGCWQSMSMDFVFGLPKDK FT AGNTGIVVFVDRLSKMAHLAAVPDTIDGEGTALLFLDRVFRQHGLPEAIVS FT DRDPRFTAKFWTSLFRVLGTRLDMSTADHPQTDGQTERVNRVVEDTLRSVC FT AEAPKRWSQMLPLVEFALNNAVHASTGYTPFYVNGLVNPRVPLTPPRSGSG FT LGGGGIAERLADVSPVAVRKQVDDFVSLRLSVMRQVRDAMAESQDTQKEHA FT DAKGRSNVERFEVGDQVLLNAKNLPTHAVSAVFKTKLRPRFIGPFKVVARK FT GLAYTLNLPKKMRTHPVFYVGLLKPYQDPAQVSAEALAPTVAGPRTAAGQQ FT VVEPREAERQQVVDPQMADQQHVAEPQVAERSARDAGARQAERSAEQLDAQ FT GPRPGCESTVVALTYPQGGSSLRDRPMGGERSRRGRRRRMDADAVPASADS FT PRESPAEARPPPALLDEHGELHFHVERLVAWRRRQGRTQYLVKWRGYPHSQ FT NSWEFEVILRQDCPDVVDAYDRAHHVPKRHHGVRQRRQALGASH" XX SQ Sequence 6959 BP; 1512 A; 1789 C; 2166 G; 1492 T; 0 other; cttggtagca cttgtagtca atcccgctcc tgagtcggtt gactatatcc tctgcgagga 60 tggaacaccc cgtgttcgcg aatttgcccc cggcgcagca ggacgcgctt actaagctta 120 tgtccttgct tggcccggag ggcgtggctc atcttgcatc gcaaggtcca gaggcggtca 180 ctgccaggct ggaatcgttc tcccgctacg agaacgcgct cttggagcat gtccaagaga 240 agatgagcgc cgcaacggcg gcggcgtcga tgacgcgtga agagtctatg agactgaaac 300 cgctcatggt gagcgtaaaa accttcgagg ggaaggatgg agagaatctc cttctctgga 360 cccgtgaggt cgagatggcc atgggatcgg ccctgctcca gtctgagcat cagcgcgtgg 420 cgctggctgt ctccaggctt ggaggtcgcg ctcgcgaatg ggcactaacg tgcggcacgt 480 ctgttgacgc tgcatttccc acttgggatc agctgaagca acagctttcg cgcgtgttcg 540 cgccgcctaa tcaggcgtac cgtatccggt caaagttcct tgctacccgc cagggtaaga 600 aggatttatt ggactatgtc caagagttga gaactcttat cgccggaatg gcggtggacc 660 ctcttccgga actggtcagc gtgaccgtgt tcatggaggg acttcgtgtg agcgcagctc 720 gaacggaagt gttccgtgta caccctaact cttttgaaga ggcggtggat gtggcattga 780 atgccgagca caacttcagg tcggcgcgac ctggttggag cgctggtagc gcaagctctt 840 cgagcggtcc agagccgatg gacctcagct atgctgaaga tgaagaagcg gagcttcttg 900 ctgcggagca gcgcgccggc atccgccgat gctttgtgtg caatagcact aagcacttga 960 gggcctattg ccctctgcgc aagaagcgcg aggctccggc gagccaaccc tccgggtcat 1020 cgccgggaaa cggcaactcc cagtaggcgc ggggcggcct actggggaag aactgagttc 1080 tgttgtgcct cgaagaggta gaggacaacg gggctcagcc ccgaagagag ctgagctctc 1140 ttacgagaag agtgtgtgca agccgggctt gctggtcgtt caagcgaacg tgaagggctt 1200 tgcaaagcca tggagagtct taattgactc gggagcctcg ggcaactacg cccgtcgctc 1260 caccctggaa gggagtcagc tgtatgctga ggcactggaa gtgccaacga aagatacgat 1320 ctctgtccgt ctcgcgacgg ggacactggt aactgtgtcg aaggtctctg tcgaccttgg 1380 agtgaagttt gagaacttcg atagcgtgga acgctgtttg gtcttagacc tggatgcgag 1440 gtatgacctc atccttggca tggcatggct ggaacgtcat gagccatgga tcgactggaa 1500 gtcgaaaacg ctgggtgcgt cgcaccctcc tcctagtgga gctttgatga gtcatgaacc 1560 cacctctgct aggaagcaga agcgcttttg gcgcgagcac gaggccgagg cggccgtagt 1620 gctggacatt ggtatgtccg aaattgttag caacgaggtt gctgtttgcc ctgagggcgt 1680 acgtggtgcg gcacgttatc cgcggagcgg tgcaggtcag gtcaatgacc cactgctggg 1740 tcctggtgag gacgagcgcg gagtggcgcg taatccactg agtggtatga atctggtcga 1800 tgacctaccg ctgcgtgacc cgagggtcgc ggtcgactgc gagtcgaggc atcatgggcg 1860 tggcccagga gatgcaggtg aagtgacacc tagttcactg tgtgaaggtc aagaacctct 1920 tggctttcag ccgagtgtct ttcgagacac tgtatcctct tcgaggagtg atggtgctgc 1980 tgcacccggt ggtggtgacg gagatgtcgc cacaccgccc tcatccggcc gggctcggtc 2040 gcggagggag aggagaagaa gacgcagggc gtctgtgacg tcttcgacgt cggacgatgt 2100 gtccaacgtg acgagcggtg atgctccacg tgattgctgt gaacagctgt atacactcgt 2160 gaacggagtg acgggggagg tagaaggcga tatcagcctt gatactctgc ccgctgcaga 2220 tgctctgcta gagctggacg agatgtccat tgccgagttc ggcgaagcct taaaggcagg 2280 cgagctagcc gaggtggtct tgctgggacc tgaggaggag ttgaactcct catccgtcgt 2340 gaacgacgcg gtcctagagg acaccaagaa ggcgctgagc gcaagaagtg gatcggcgat 2400 cctcaaagat ccttcggatc ccttctaccc ggtggtgaag gcgtatggag acgttgtctc 2460 aaaagaccca ccgacgggcc tgcctccgga tcgaggcgtg tgtcatgaga ttgacctggt 2520 tcctggaacc aaatactgcg taacaaggca atggcctttg ccgagagagc agtgtgacgt 2580 cattgacgca ttcttccgtg cgaagcacga ggcagggatg gtgcgtgaga gtaagtctcc 2640 gcactcgaca cccacgttct gtgtcagaaa gccgaacggc aagtggcgca ttgttcatgc 2700 ttttaacaag ctaaatgcgg ccactatccc ggcgcaaacg ccgattcctc gcaaggatgt 2760 tctgcagaac aacatggtag gctgtacgct gtacagcgcg ctcgacttgg tcgatggcta 2820 ctaccaattg ctcatgagag cgagcgacat tccgctgaca gcggtgagta ctccgagcgg 2880 tatgctctgg gagtggctgg tgatgcccca ggggctgtca aacgcaccag caacgttcaa 2940 tcgtcttgtg acgcagctgt ttaggcccca ccgggcgtac gctcaaacgt actttgacga 3000 tatattcgtc catagtcgtg ccgagcacgg aaagtcagac gtggataacc acattgacca 3060 cttgcgagcg gtgctcgagt gcatgcgcac taataagttg tatgccaact tggacaagtg 3120 cgtctttggc gcggaggaga tacctttcct cgggtgcttc attgggaagc gtggcttacg 3180 ggcagatcct gccaaagtca aggccatcgt ggactggccg gttcccaaga accaaaaaga 3240 cttacgcaag tggctaggct tagccaatta cttgcacaag tacagtgcga actacgcgga 3300 gatggctcgg ccattatcag atctccttaa gaaggacgca ccatggtgct ggaacgtcga 3360 gcacgacgga gcctttgagg ctgtgaagga gagccttctc caggctccga tccttgcgct 3420 gccggacccg gatagtccgt ttagcgtcgt ctgtgacgcc tccgattttg caatcggttg 3480 tgctttacta caagcagacg ccgaagggcg tgaacgcgtg atcgcgtttg agtctcgcca 3540 gctcaaagct gcagagaaga actatccagt tcatgacaaa gagctacttg caatgaagta 3600 tgctctagtc aaattcaggg tacacctgct aggctctaag ccttttgtga tctttactga 3660 tcatgcgtcg ttacgcactg cgacacagtc gcctcatctc tctcagagaa tggcaagatg 3720 gctttccttc tttgccgagt ataacttcga ggtgaagtac aagccggggc ggcttaatgt 3780 agtggccgat gcgctctcgc gcaggccgga ctacgagtta gctcatgtca cgacagtgac 3840 gtcgtcagtg cctgacttga tacgcggagc gtatgcacaa gacgacatgt gcgtagcgct 3900 gctacgggct cttgggagcg aagagtttaa agactctgac aaggaattgt ctgggcgctt 3960 acgcgcgagg ctgcatcgat actcactcga tggcggcctg ctgtactaca gcaccgacgc 4020 tgaggataac cctcgtgtag tcgttcctca tgatgaggat ctaaagtatc gaatcctcta 4080 tgaggttcat gatacgcccg tgggcgggca cttaggtcgg gagaagacct atggctcggt 4140 gagctcgatg tactggtggc ccaagatgta taagtgggtc ggcacctatg tacgcacgtg 4200 tgagacgtgt caacggacaa agtccgcgcc gagcacggca gcgccattgg cgagtttgcc 4260 tgtccccaag ggatgctggc agtccatgag tatggacttt gtgtttggcc ttcccaagga 4320 taaggcggga aacacaggta tagtggtctt tgtagaccga ttgagcaaga tggctcattt 4380 agcggcagtg ccggacacca ttgatggtga aggtacagct ttgctgtttt tagaccgagt 4440 ctttcgccaa catggcttgc ctgaggcaat tgtctcggat cgagatccgc gcttcaccgc 4500 gaagttctgg acgtccctct tcagagtgct cggcactcgt ttggacatgt ccacggcgga 4560 ccatccgcag accgatggtc aaaccgaacg cgtgaatcgc gttgtggagg ataccctccg 4620 aagcgtatgc gctgaggcgc caaaacgctg gagccagatg ctcccactcg ttgagttcgc 4680 attaaataat gcagtgcacg cctcgacagg ctacactccg ttctatgtga acggcttggt 4740 taaccctcgc gtcccactga cgccgccacg cagtggctca gggcttggtg ggggagggat 4800 agccgagcgg ctagctgatg tcagccctgt tgcggttcgc aagcaagtcg atgactttgt 4860 ctctttgaga ctgagcgtaa tgcgtcaagt acgcgacgct atggctgaaa gccaagacac 4920 gcaaaaggaa catgcagatg ccaagggcag aagcaatgtt gagaggtttg aggtcggtga 4980 ccaagtttta ttaaacgcta aaaacctacc tactcatgca gtgtctgcag tcttcaagac 5040 gaagttaaga cctcggttca taggaccgtt caaggtcgtg gccaggaagg gcctagcgta 5100 tacgctcaac cttccgaaga agatgcgcac gcatccggtc ttctatgtcg gcttgcttaa 5160 gccataccaa gaccctgctc aggtgagcgc ggaggcgttg gcaccaacgg tggctgggcc 5220 acggacagct gcagggcagc aggtggtaga gccacgggag gctgaacgac agcaagtggt 5280 ggatccacag atggctgatc aacagcatgt ggcagagcca caggtcgcgg agcgaagtgc 5340 tcgagatgca ggagcaaggc aagctgaacg ttcagccgag cagctggacg ctcaaggtcc 5400 gagacctggt tgtgagtcaa cagtggtggc tctaacctat ccacaaggtg gatcatctct 5460 tcgagatcga ccgatgggcg gtgaacgttc gcgtcgtgga cgccggcgtc gtatggacgc 5520 agacgccgtt ccggcaagtg ctgactctcc ccgcgagagc ccagctgagg caaggcctcc 5580 tcctgctctg ctcgatgagc atggtgagct ccactttcac gtggaacgcc ttgtggcgtg 5640 gcgtagacgc cagggtcgta cccagtactt agtgaagtgg aggggttacc ctcactcaca 5700 gaactcatgg gagtttgagg ttatcctccg gcaagattgc cctgacgtcg ttgacgctta 5760 cgaccgggca catcatgtgc cgaagcgcca ccatggcgtg cgacagcgtc gccaggcgct 5820 gggcgcctcc cactagagtg gggagcgatg tggtcagtag ttgagctcag gctctgacca 5880 gtggctgcag cagccagctc gtacgtatga gcggtgctcg cagcgggagc aggaggtgga 5940 gagacctcgt agtgttaggg acatggtccc gaaggaagca ggtgcttcgt gttgtgctga 6000 acaaggttca ggcacaagcg tctcgataga cgcatagttg ttttgaaaca acttgctcga 6060 tgagcatgat ccaaatgtgg atgcgctgta acagcgaaag tggtgtcccg cacggggatc 6120 gaaccactgg cctttggctt gacaggccgg agctctacca ttgagctaca agggcgatgc 6180 ccgtacgtca gcccgagaac ggactactca tggtatgaga gggctgcgcc cgggtggatt 6240 tgaaccaccg acctgtggct ttcaaagcca gcgctcgacc actgagctga aagggcgttg 6300 cccttaagct tgtccattca aggacaatag ttcatggaac gagagggctg tgccctggcg 6360 ggttcgaacc accgacctgt ggcttccaaa gccaacgctc gaccactgag ctaaaagcgg 6420 attgctctta agcttgtcca agcgtgaacg atcgttcatg gaacgacagg gctgtgccct 6480 ggtgggctcg aaccaccgac ctgtggctct caaagccaac gctcaaccat tgagctaaaa 6540 gggtgttgcc cttaagcttg tccaagcgtg aacattcgtt catggaacga gagggctgtg 6600 ccctagtggg tttgaaccac ggacctatcg cttgtgaagc gagtgttcaa ccgctgagct 6660 gttgtcgacg actcgaatga gtcaagagca ttgctctaag cggtttgcag ctcttggagt 6720 aggcgcggag cgcgagcgta ggtctgagac cgcttgagag caagatgcgc gctgcgcttg 6780 gagcattggg ccgtgggccg acgacgagaa gttgggcatc aacgatgcgt aggcgtttgt 6840 gagctcacgg agctgtacaa cgctggtgtg aggtgtagta acctccgccg tcttaacaag 6900 acgtgacctc gctgaggaga gtttcgagaa cggaatgttc tcatcttagt tggggagag 6959 // ID Gypsy-1_PSo-LTR repbase; DNA; PLN; 917 BP. XX AC AAQY01000070; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PSo_; KW Gypsy-1_PSo-I; Gypsy-1_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-917 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000070; Positions 58595 59511. XX SQ Sequence 917 BP; 214 A; 205 C; 262 G; 236 T; 0 other; tgtcgtaatg cgggttgaag gattgtgaga cgatggaccc ggaggttacc cgaaggtgac 60 ccgagagtga gccacttgaa ttatgggaca ccctagctcg gcgtcccgta tagaaggccg 120 gcgactgatt acgaaacccg atggcgtatt tacggagatc cagaacgggg aggcccgtaa 180 caaggacgat gacaccgcac ggagacagca gatgacgtca tgaggtaaag gcgtgcagca 240 tactggttgg ttgattggcc ggcagacgag ccgccggtag ataggcagtt cagttcagaa 300 tttccaacaa cgagacaagg tacttcttca tattagtctt tgtgttgtgc ggttagcgcc 360 tacgtgtgta ctgtgactgt ttcctaccta cttgcgaagt gtactcgggg ttctggattg 420 atttggcctc cccggtaacc ttctagtagc gtagtgtgtt gcattgtctg gactcaggag 480 atcagctctc agtgttcgac agtaggacac tctaaacggt ttagtaaggt attggtgtgc 540 gtctcgcact ttggtttgga cccgcagact agctgcggca ggagatctcc agtagatctc 600 gtacatattg tacaacaagt tgtcgtacag tgggaagagt tacctcgctg tacaagtgca 660 tccgcgacag agttaaccta agtctctgcc tgcgagtgta aggaacccca tattcacccc 720 ttcatattac acgtcttcta ggaattacgc tagataaaga tccgagtctt gctacaaggg 780 tacacaaggg gaggcctaga gatctcggga ctagttctcg ttgtctttgg gtatttggct 840 tgcaggggta accccccgta gttgcgtggc aggacacgtg tgggagttta ttagttttta 900 tctgaaggac tccacca 917 // ID PIF_Harbinger-1_EmiHux repbase; DNA; PLN; 5191 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-1_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 5191 BP; 877 A; 1704 C; 1665 G; 945 T; 0 other; gagtaggttc gggtttgggt gttttcagtg cgtttcaagc gagccagcct gtggcagaac 60 acttcgcttc gcgctgcagc gcttgggcca ccgccctggc cgtgagcgag cttttgccgg 120 ccacggcggc taccaagagg atgggcccgg gctctggcgc cgcgagcacg gtgccacctc 180 gacgtgagta ggccctgaag ccgcccggcg ctcgccgcgc tgcccacgcc agagactggc 240 ttgctgccgc accacctctc gtgactgtac taggcgggac ggaggtcgac actggtcagc 300 accgcggctg gtgacgccgc gaggcgcccg ccaactctcg gcgacggtga gacggtgcaa 360 gatgtgcagc tctcggcaga cgtcgaggcg ctcgagctgc ggtgcaacga gccgctccgc 420 tcccgtacga cccgcttgta cagtgacaag tggcacggtt cgctcccgtc tacacgctcg 480 acttcctcac cagggtgcgc cgcttgcgcg cacgcacacc tattgcccgc cgcacacgcg 540 caccctgcca cagacacgtc gatgtcgcgc actgctcagg tggggcagac gttcccaggc 600 tcgacgcctg ggagtgttgt cctatcatcc gcgctcgtcg gcgactcgac cgacttcccc 660 agcgagagtg ttgcgagcaa cagggtcgcc tcggcggctt gagctgcgca gcgacagatc 720 actcctcacc aggcaagctg cggcccggac ggccgcgtct cgtagttgca cacccgtggc 780 gactacgttc ccgcggcggt gacaatgtcc cgtgttgacg acgggagaca ctggtgtcac 840 gcgccggctt gcttgcggct cggcgcgcgc gccgccgcgc gtggcggccg cgtgaggcgt 900 tgcacaccct cgttcgggcg tgtgtcgtgg ctgtgttatg tgtgtttggt ccttgccccc 960 agattttgtc tttttaatag tttgctactc gcgtactcgt ggggaatgat cactgggaga 1020 cgcaaaaaag aagcgacgtc cgtcctttga acgtttcgcg cgaacccacc cgcatcacgg 1080 cgcgctgaaa gccagcgaga tctcggctgc tctccatgca gggccttctc caggccggtg 1140 ccgccgccgc agccgccgaa gggatcggcc tcgacggtga tgacgccaac gagccgagtc 1200 tcacctattc ctacgctcag gcagcccgcc gagccctcgg cggcgccggg aggaagcggc 1260 gccagagttt gaagcccggc caagacaagt gctgggtggc cggttgcgag tgcaccgtag 1320 gccttgagag catccctgct tcccgtgtgg aggatgccgc gtacatcatg gagcacgaga 1380 tgggcctcag cttcacaaaa gacgggaatc cacgtccgct gccccagaaa cagaacaagc 1440 tgtgcggtac gcaccggccc gagctacccg cggagcgcat cattggggca aaggtgctgc 1500 ttgagggcga cgagttcttt gtcgacgcga cagtcacggg tcccgctccg ccgcctgctg 1560 tgcagccgag gcggccgcct ggctctgctc ctctcagacg gtggcgtgcc acagtcgaca 1620 gtgatgactc cacgcgcgac ctcgacgggg atgaggaggt gtggcgtctc tcccgcctgc 1680 gtaagctttt cgccaccacc acagagcgct ccgaacttgt caagaagttg aggaccgagg 1740 tgaggcgcct gcagcgccaa acgcgcgagc tcaaggcggc ggcggaggag gagggcgagg 1800 gtgagggcga gggtgctggg ccagactcga gcgcgcctgc aggaccacct cccgccccga 1860 ccgtgtcctc aaagaccgtg cgactgcggg tgcctgtgcc cgaggattgg cagccaccgc 1920 agcagccaat catctttgag gtgccagctg gacaggtccg gcactcgatg gcgaagacat 1980 tgatggtcat ccctccaccc tcgactgtgc ctggcgggtt tatgcacgtc gatgtcgagc 2040 tgaggattga ggagccgcta ccggtagaga tgcccgacag gggtggaaga tcttcgaggc 2100 atctccgtga ctacctcgtc tctcgtgcgt cgcaagccgg gctcgagtac tctgccgatg 2160 caaacccgct caaccctcct cgcgcatggc ctctgcgcga gcagctctcc tttgctaact 2220 tgcgacccga gtactttgct cttccagagc gctcgaggct gttcaagaag atgtttggct 2280 tcgactcgtg ggacgaggcc atgaaggtgt acgagatggt gtaccggtgg gtcgagagga 2340 cggatggcgt gcggcgagcg agggaggagg ggcaggcggc gctgcacccg cgcttccagt 2400 tcctagcggc cctgtggcga atgcggggat ataaagatat cgacgagctc gcctctttct 2460 ttggcctcct tgccccgcga atgagcgtag actcttcgcg gtggatccgt cgcctcggcc 2520 gctttgcgaa ggagaacctc gtcatcgagc ccaaggacta ccagacggtg ctcgacctgc 2580 tgcccaagtc cttcaaggag tgcggcctcg acaccgtggt tgccatcgga gactgcaccg 2640 acatcatgac cgagacctca cgcgagagca tcatgacgtc caacctcctc cgttcggaca 2700 agtcgaagca ctcggcggcg atggggctca cgtggtgcac gccgaatggc cagatcatca 2760 tcgcgaccga ccttttcatg ggccgctcct ccgagcacga ggcgtgcaag gcgtgcatcc 2820 cggcctttga gcgcatgccg gcgaagttct cagtcatgta cgacaagggt gtctcgaagc 2880 tgcgcgtcca cctgccgcac ctcaacgagg tgataactcc ttgcttcctc agaaaggcgc 2940 cgcgcttcac catcgaccag ggcatccgca accgtggcgt gacgtgctgc cgctacgtgg 3000 tggaggtgcc cttctctggc atgaaggcgt ggaagatgct cggcgacgtc gtgaaggagg 3060 aggacaagcc cctgctcaac tacgtgtggt ggtggaccat cggcttccac aacctcaact 3120 gcgcagtgct caagccgccg tcgggtgtgt gaggtgtatg tgtttctcat tttgtgactc 3180 ccttttttac tcattagtca tgtctagttg ggcgactggg ccacgtccgc cacgtccgcc 3240 acgtccaccc cgctcccgtc ctcctcgcga cttgcgccgc tgcttgctct tgccctggct 3300 ccgattgagt gtgtcgatgc tgccaggagt tggaaccgca ttcgagggcg tgcccagctg 3360 cggtggcgac tcgaatgagc ggggtggacg gggcaccggc cgtgggctcg agacaccgga 3420 cggacccgct gccgccggcg ccggcgacgc ctccgcctcc gcctccacct cggcagcagc 3480 ctccgcctct gcggccgcag cttcctccgc tgcctcgtcc gcctcagctt gggcttgcgc 3540 cgccgctgca gctgcgagcg cgtctagccc accgccgctc tcctcgccgt cagcctcgtc 3600 gtacggtgca acgatgaagg gcatgtcctt gtcgatgcac tcctgcatca gccacgccca 3660 gaatggctcg gcgggtcgtg cagcagtctt ccactccttg gaggcgtcct cgttcctcgc 3720 ctcctttgcc agcgcctcat cgactgcctg ctggcttgtc ccgcgccgcc tctcgcgctc 3780 cttcttcttt ggtgggtacg cacggccatc aaggacgaga cacactttgc cacccaaagc 3840 atagacgccc tggaggtgct gcgtcacata ctgctgctga cgctgcgaga ttccctcctg 3900 cgccacctgc ttcggctgct tcttcgacgc cctgtgtgcg aggcccgaga tgtcggtaag 3960 caccatcttg ccgtcaaacg ggttgtgggc gctgacgtga accaggtcgc cggcagcggg 4020 ggcaaggatc ttgcccttgc ccgcacctga accccatccc atggagagca gccgagatct 4080 cgctggatat cagcggccgt gatgcgcgtg gagactggag ttcgcgcgaa aggtcaaagg 4140 ggacggacgt cggttcttta tttttttgcc tgccagtgat cattccccgc gagtacgcga 4200 gtagcaaaca ttcataaaaa gacaaaatct gcgtgcaagg accaacacac ataacacagc 4260 cacgacacac gcccgaacga gggtgtgcaa cgcctcacgc ggccgccgcc acgcgcggcg 4320 gcgcgcgcgc cgagccgcaa gcaagccggc gcgtgacacc agtgtctccc gtcgtcaaca 4380 cgggacattg tcaccgccgc gggaacgtag tcgccacggg tgtgcaacta cgagacgcgg 4440 ccgtccgggc cgcagcttgc ctggtgagga gtgatctgtc gctgcgcagc tcaagccgcc 4500 gaggcgaccc tgttgctcgc aacactctcg ctggggaagt cggtcgagtc gccgacgagc 4560 gcggatgata ggacaacact ttcaggcgtc gagcctggga acgtctgccc cacctgagca 4620 gtgcgcgaca tcgacgtgtc tgtggcaggg tgcgcgtgtg cggcgggcaa aaggtgtgcg 4680 tgcgcgcaag cggcgcaccc tggtgaggaa gtcgagcgtg tagacgggag cgaaccgtgc 4740 cacttgtcac tgtacaagcg ggtcgtacgg gagcggagcg gctcgttgca ccgcagctcg 4800 agcgcctcga cgtctgccga gagctgcaca tcttgcatcg tctcgccgtc gccgagagtt 4860 ggcgggcgcc tcgcggcgtc accagccgcg gtgctgacca gtgtcgacct ccgtcccgcc 4920 tagtacagtc acgagaggtg gtgcggcagc aagccagtct ctggcgtggg cagcgcggcg 4980 agcgccgggc ggcttcaggc ctgctctcgt cgaggtggca ccgtgctcgc ggcgccagag 5040 cccgggccca tcctcttggt agccgccgtg gccggcaaaa gctcatacat ggccagggcg 5100 gtggcccaag cgctgcagcg cgaagcgaag tgttctgcca caggctggct cgcttgaaac 5160 gcactgaaaa cacccaaacc cgaacaccct c 5191 // ID Copia-8_ES-I repbase; DNA; PLN; 5022 BP. XX AC CABU01000625; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_ES_; KW Copia-8_ES-LTR; Copia-8_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-5022 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000625; Positions 14875 19896. XX CC Positions [2152-2679] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 703..4470 FT /product="Copia-8_ES-I_1p" FT /translation="MVRLISKYSLALRATTFHAMRIRGKDSGRADGAGSHD FT RALNTVTHGGARAFRKQGGRGGRGGRGGRGRRRNGGQTTNGSTGGGSSNGN FT NGGATTHGDSAGNAQGGRGNGRGSQAFGGNGRGRGRDNGQNSKGLCRYCHN FT SKVHGWHNCPLRLSQEAEEAKEQAAHVTQESTTQAWFTRIEGPSSELEDFA FT IVIGDDYMRVQEAPAAALPETRTADNPQVQKVPGAAQPEERAAGVVRVQDV FT LAAVLCDECAAGDVPVQAALVAETHLQAEKASDGTEYVTYTNVFQVEPVNP FT SAVVDTTVYIDSAASSHMVCTESRLSKHVRDPVDCAVRIIGSCGNSNATKK FT GTLKFGVRNDQNTVVPVAVEVLLVRNLGANILSVGALAEKGVMCDLLLTPP FT ALRHGNHVFPISTAVRRMYVVNVIIDDVNLDAAEVYRTKVDADMWHRRMGH FT CHPRALQQLADKATTGVKFNRNIEPGDCGVCAVGDSKKSSHPPSNRTRATT FT RLEILSADVWGPHPVKSSGGCQSAVMFTDDFSRMRFGFLLKTKDGVAESLQ FT ELIQNEADPLGTCIGKVHCDGGGEFKGRFQALCESMGIKLETSPPYVPQGN FT AIAERGFGTIIGTARKLLLGAPHLPGHLWGEAFQTAIYLKNRTPTEVLGGK FT APLEVWEGKPLGDMSHIHEWGSVAFKHEEARFRDTKLSARAKKMYHVGYNT FT KNRTYQLWEPAEPLMITNSAEVSFREKETRDVVKPEYGYDPFSEMTPTTIY FT LPDTVDTNDEENKTAEEEEVSPTPSGPQMEDSNLRRSGRVSNAPDRMNLHT FT TEEAYERIEHAMLTSDELGNIGTGRPGEVGYMPSDPANYNEAISGLDSKRW FT QASMSDEGQSLYEHDVFDWVDPPQGVQLIPSKFIYKWKYNQDGVPVRPKSR FT VMVQGFHEADTGKDKAAPVASMESVHLLIAVAAHHGLVLKQADIKTAFLHA FT RIPEDAEPIYVIPPKGFECSSQQAKQVWKLKAWLYGLRLSPKGWNGTFHVY FT LLEIGVVQSTADPCLYILNAGEVILLVYVDDILFTGTEKNQVSTIIEQLKG FT RFDTVDLGDARFILGMAVDRNVQAGTIRLTQEVYIKAVLAKFGMADSHPTK FT TPAEVGTINVVEEEALSPEDTTMFRSATGLVLYLCRGSRPEIAHTVLVLTR FT SMAKPGAKAMAKLKRLLLFLKGTSSIGITYREDAEQGNLLTAYVDSDFAGD FT GDDRRSTTSVVCFWQVDRWTGGQLSKRWWPSPRWKQNMSLCPRHVR" XX SQ Sequence 5022 BP; 1211 A; 1246 C; 1539 G; 1026 T; 0 other; acagccgttg tcgtgctgtt aggtcgtgag cctcgcgcgg caggggaact gacacgagtc 60 acacggcgtc tgcagctccc accacgaatc caatacaacg tgggtttgtg ccttttgatg 120 gtgaggatgc gagcttctct ggatgggtca ctctcacacg ggtcttgatg cataaggctg 180 gcctcggaaa gaagatattg tctggaaaag aacaaccccc tgaagatctg acgggagatg 240 aaaccccgga tgcacggacg gcgcatgcca ctgcgatgga gaaatttgca gagagaaatg 300 gcgagctgta catgcggctt cttatgtcga cgtccgacgg cgcaggaggg ttctcccgcg 360 cggcatcaca ggtggtacag aggtacgggc cgattggaga ggctgagtat ggggatggtc 420 gtgctgcctt tgtggcgcta gacaaaaagt acaaggtggc gggtccgtat cggatgaagc 480 agctgcacgc ccaactggca tccgtcgccg tcacagcagc cgacgaatat tttgatccgt 540 cgcgcgcaat ccaggagttg cgccgcattt ctgccgagtt gggttctctc ggcgatgttg 600 tcgtcgactc gcgtctgtcc aacgctttgc acgacgctct tccggacagt cactacggcg 660 aactgaagac tgcgttgctg tgtgagtcgc agaggtcggc tgatggtacg gttgatttcg 720 aagtactcac tcgccctccg tgctacaaca tttcacgcaa tgcgaatccg ggggaaagac 780 tctggccgcg ctgacggggc aggcagccat gatcgggcat tgaacactgt cacgcacgga 840 ggagcccgtg ctttccgcaa gcaagggggg cgtggcggac gtggcggacg tggcggacgt 900 ggtcgtcgaa gaaatggcgg ccaaactacg aacggttcga cgggcggcgg ttcgtcgaac 960 gggaacaacg gaggtgccac gacacacgga gacagcgcgg gaaatgcgca aggcggacgc 1020 ggcaatggtc gcggtagcca agctttcggt ggcaacggtc gaggaagggg ccgggataat 1080 ggtcaaaact cgaagggctt gtgcaggtac tgtcacaact ccaaagtgca cgggtggcac 1140 aactgcccgc ttcgcctttc gcaggaggca gaagaagcca aggaacaggc tgctcatgtc 1200 acgcaggagt cgaccacgca ggcgtggttt acgcggatcg agggacccag cagcgagctg 1260 gaggacttcg caattgttat cggagatgac tacatgcggg tgcaggaggc acctgctgcg 1320 gcgctgccgg aaacccgcac cgccgacaac ccgcaggtgc agaaggtgcc tggtgcggcg 1380 cagccagagg agcgcgctgc tggagttgtg cgggtgcagg atgtgcttgc tgcggtgctg 1440 tgtgatgagt gcgccgctgg tgatgtgccg gtgcaggcgg cgcttgtggc agagactcac 1500 cttcaggcgg agaaggcgtc tgatggaaca gagtatgtca cgtacaccaa cgtgtttcaa 1560 gtggaaccgg tgaatccctc cgctgttgta gacacgactg tatacatcga ttctgccgct 1620 tctagccaca tggtctgcac ggagtcccgc ctgtccaaac atgttcgtga tccggtggac 1680 tgcgccgtgc gtatcatcgg gtcctgtggt aactcaaatg caaccaagaa aggcacgcta 1740 aaatttggag ttcggaatga tcagaacacg gtggttccgg tagcggtgga agttctgctg 1800 gtccgcaacc taggggctaa catcttgtcg gttggagctt tagccgagaa gggggtgatg 1860 tgtgatctgc tgttgacccc gccggctctt cgccatggca accatgtttt ccccatctcg 1920 acggcggtgc ggcggatgta cgtcgtgaac gtcatcatcg acgacgtcaa tcttgacgcc 1980 gccgaggtgt accgcaccaa ggtcgacgct gatatgtggc atcgaagaat gggtcattgc 2040 catccacgtg ctctacagca gctggcggac aaagcgacaa ccggagtgaa gttcaaccgg 2100 aacatcgaac caggtgactg cggggtttgc gcggttggcg acagcaagaa aagtagccac 2160 cccccgtcga atcgcactcg agccacgact cggcttgaga ttctgagcgc cgatgtgtgg 2220 gggccgcacc ctgtcaagtc gtccggcggt tgccagagtg ccgttatgtt tactgatgac 2280 ttctctcgca tgaggtttgg ctttctcctg aagacgaaag atggggtggc ggagtcgctc 2340 caagagctta tccagaacga agcggatcct ttggggacct gcatcggcaa ggtgcactgc 2400 gatggcggag gagagttcaa gggcaggttc caagcgttgt gtgagtccat gggaattaag 2460 ctcgagacta gccctcccta cgtcccgcag gggaacgcca tcgccgaacg tggatttggc 2520 accatcatcg gaacggcgcg caagctactc ctgggagcac cgcaccttcc aggtcatctg 2580 tggggcgaag cattccaaac agctatctac ctcaagaatc gcacacctac ggaggttctg 2640 ggcggaaaag ccccacttga ggtatgggag ggaaaaccgc taggtgacat gtcgcacatc 2700 cacgaatggg gctcggtagc ttttaagcat gaagaagcga gattccgaga taccaagctg 2760 tcagcaaggg caaagaaaat gtaccatgtg gggtacaaca ccaagaatag gacgtaccag 2820 ctgtgggaac cggcggagcc cctcatgatc accaactccg ctgaggtgtc ctttcgtgag 2880 aaagagactc gcgacgtggt caaacccgag tacgggtacg acccgttctc agagatgact 2940 cccaccacca tctatctacc ggacacggtg gacactaacg acgaagaaaa caaaacagca 3000 gaagaagaag aagtatcgcc aacgccatcg ggaccccaaa tggaggactc gaacctacgt 3060 cggagcggca gggtctccaa tgcaccggat aggatgaatc tgcatacgac ggaggaggcg 3120 tacgagcgga tcgaacatgc tatgctgacc agcgacgaac tcggaaacat cgggacgggt 3180 cgccccggtg aggtaggcta catgccttcc gacccagcca actataacga agcgataagc 3240 ggactagact caaaacgttg gcaagcaagc atgagcgacg aaggacagtc gctgtacgag 3300 catgacgtgt ttgactgggt tgacccgccc cagggtgttc aactgattcc gtctaagttc 3360 atctataaat ggaaatacaa ccaagatggt gtgccggttc gcccgaagag tcgcgtcatg 3420 gtacaaggat ttcatgaagc cgatacggga aaggacaagg cagcgccagt ggcgtctatg 3480 gaatctgtgc atctgttgat tgctgttgct gctcaccacg gtctagttct caagcaagct 3540 gacatcaaga cggctttcct gcatgccaga attcccgaag atgcggaacc catctacgtg 3600 atacctccaa aagggttcga gtgctcgtcg caacaagcta aacaggtctg gaaactcaag 3660 gcatggctgt acggtttacg tctatctccg aagggatgga acgggacatt tcacgtgtat 3720 ttgctggaga tcggagtcgt gcaaagcacg gcggatccgt gtctgtacat cttgaatgcg 3780 ggcgaagtaa ttctcctagt ttacgtggat gacattctgt tcactggaac cgaaaagaat 3840 caagtgtcga cgatcatcga acagctgaag ggacgctttg atacggtgga cctcggggat 3900 gcgaggttta tcctaggaat ggccgttgat cgcaacgttc aagcaggaac gattcgcttg 3960 acgcaggagg tgtacatcaa ggcggtgcta gctaagtttg gaatggccga ctcgcatccg 4020 acgaagactc cggctgaggt tggcacgata aatgtcgtgg aggaagaagc actgtcgcca 4080 gaggacacca cgatgttcag atcagccacg ggtttggttc tttacttgtg caggggatcg 4140 aggccggaga tcgcccacac ggtgttggtg cttaccagga gcatggccaa accaggcgcg 4200 aaggcgatgg ccaaactgaa gcgactgctc ctgttcctga aaggaacgag ctccattggg 4260 ataacgtaca gggaagacgc tgaacaagga aacctactga cagcatatgt tgattccgac 4320 tttgcaggcg atggagatga ccgtcgctcg actacaagcg ttgtttgttt ctggcaggtg 4380 gaccggtgga ctggaggtca gttaagcaaa cggtggtggc cctctcctcg gtggaagcaa 4440 aatatgtcgc tatgtccaag gcatgtacga tgatcatcca ctaccgtcac cttcagagca 4500 ccatcaacca gatgcaagag gaggcgacga ggatgttcga ggacagcact ggcgcgatct 4560 cgactagtgt aaacaacaag atcacgccgc gtacgaagca catagacatc aagtatcatc 4620 atgtaaggtc gcttatcgaa gacaacgtag tcgcagtgga gtaccttgag tctgacgcgc 4680 agaaagctga cattcttaca aagagtttgg gtgcggtgaa gtttctaagg aaccgcctct 4740 tgctcctagg agtgtaaaca cctcccctct tcaaatcgga ccttttatgt cttgagggtt 4800 ggacggtgta tgtgtattta catgtgttga aatcaattcg ggagtttgtg ttgtaggaag 4860 gaaacacatc gctgttacga tagcagctga atgaaacaag tagatacgga taatgagtta 4920 gaagttcttt agacagcatt gtttcgagag gacacggatg tatatcgttt cgagaggtct 4980 tatgcatcgg aactgtagaa tgacgtagtt cttgagagga ca 5022 // ID Copia-11_PR-LTR repbase; DNA; PLN; 257 BP. XX AC AAQX01001726; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PR_; KW Copia-11_PR-I; Copia-11_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-257 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001726; Positions 16906 17162. XX SQ Sequence 257 BP; 58 A; 55 C; 68 G; 76 T; 0 other; tgttggaatt ccgattgcaa tcacggcgac cgtgactatg ttgccgtgtg actatgtgtg 60 gacccggcag tttagcagat ctgtgatgag catagtgaga ccaagatatg cgggtctttt 120 acttgggaag gggctcaagc ccgcttaaga atcgttagcg cttaggagct gtagcgatag 180 cgattcaatc ttactttctt ttcttttcca tcctagtgca gactcctggt tatacggatc 240 gagtgcaact tcgaaca 257 // ID PIF_Harbinger-2_PI repbase; DNA; PLN; 2449 BP. XX AC . XX DT 16-MAY-2011 (Rel. 16.05, Created) DT 16-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-2_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2449 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2449 BP; 568 A; 630 C; 607 G; 644 T; 0 other; ggcccttgtt caggtacaag catgcattct gtactgaaaa ccaaaacttc ttctattggt 60 caaaaatgca ggggtactgt gtaccaattt gggtctgttg cgttctggca cgcagcagat 120 cagacctaac gaacagaggt gttctgggtg gagcacaatt gtgctagagc ggccttgctt 180 ttatatacca ttcatttcac gcaagtcacc ctttcaaatg gaccccgaag ccgtcgctgt 240 agtcgtagtg ctactcggtg cttgcacagc atctctagct gctgctacgt ttgacaagcg 300 ttgttgcagg cgtccaccta ctggtgtctc caccttccct actactacgt ttgaggatgc 360 aatggcggct cctagcacga attggtttcg taagaaacta cggtgtgatc gtcaatcttt 420 tttactgttg taccgcgaat tccacgccgc gtgtaaacgc aagccagcag ccaacagtaa 480 gtgccctctg gttaagcgat ttgctctaac aatactttac ctagcgcagg gaggaaccat 540 ggacgaggcc gccacggtgc tgggaatttc gcgcccacgt tccgtggttt acatcaatga 600 ctgtttagat gtactcagct ccatggcggc tacgaaggtg attctaccta aagctagcga 660 agtagcctct ctagaagccg gctttttcgc ggttgcgggg ttcccaggtg tggttggagc 720 ggtggatgga acgttgattg ctataccacg ccctcatgat tttgagggct ggtattgccg 780 caaaggattt cctgctgtca acgtccaagc ggttgttgat cataccggag cattccgctc 840 aatatccatt cgttcgggct ccaacaatga ccagtcatta tggaatgggt cgggtgttag 900 aaagtggtgc gtcattttgg tactatttac tctgtgtatg atatactgac gctctcgtac 960 tgtggtagct tgtccacatt tgtcccgcca ggaaagcact tgctggccga tgctggctac 1020 aagatatggg ggcacatgct aactccttac cctgaatctg aagccgctga tgaacgtcgg 1080 aagcgtatct acaatcgcgt tcattcccgc actcggattg cagtagaatg cgcctttggc 1140 cgcctcaaga atcgcttcag gattctgtta gccaagctag aacagaagac acccggtcgc 1200 atttgcaaag tgatatatag ctgcatcgtt ctgcacaaca tgctattggc tgtgaacgac 1260 agctgtgcag taaatggcga ggatccgcac cgtgcagaac tacaagtccg agacgacgat 1320 ggaggtcttt ctgttgcaga gcagtcattt tcgcacagac ttggaaaaac taaaagagac 1380 gatctagcag acatattcat gtcgtagatt aacccaacaa ttttactcgg attagcagga 1440 tggttgatcg gtattatgcg tttttacgcg ctaaaagttg ttgcaatagc tgcaattgaa 1500 tagcttgaaa acgtcgagtt tcctcgtggt gccgttctag tgttgcggct aggcttccca 1560 atccatcgtc tggcgacgtg cgtgctgaaa gcgaagctgc aattgcttcc atgccgctcc 1620 gcattgatgt agctagactc tcaattggag acaactttcc ttttccaggc gcgtctgcag 1680 gaggtctgtc tgcatcaccg gaatcgtggt ccaccacaga gctgtcgctc tccccgccat 1740 cgagatggga gtccagcagc acctcaccac ttatgccgac cttgccagag aaggcgtcgt 1800 gcaaaatact ccacagaccg tcgtcaattt cacgcagaga acgagcacag ttgccggtct 1860 ttccttcttc tctcttctcc ttgcgataga tgcattttaa cttccgatac ttttgtgaaa 1920 cctgtacaaa ttaagcgaat tgttagcaat ctcaccagct attagacgtt atggcgatgc 1980 atcacctgat ctctgttgat aacgactccc aaagactgcg acagcacact tgcaaagtat 2040 tgccaagcta gagcagtctg ggttttggtc tgagccgctt caagtcggcg ttttacgtct 2100 ccgtctgcga agcgcagacg cacgagctct gcgaccatct cgtttgacca cttgagacgc 2160 ttggccgctc tcaccttttt gggtggcgtg cctgaccgcg cggccgaggg ctccgaagtc 2220 cccttagtgc tgtgcgcgcc ggtgttctgg tcttccatca aaatgccaag tgagcaattt 2280 tcagctctac actgaaagat tggttggtag agagagagag acaagcttaa gccttacttg 2340 aacaagatgt agaacggata gaaccgatcg tcaggacgag tgcagacgtc tccaaacttt 2400 ccctaaccca cttactcaca gcatccgttc caccacctga accagggcc 2449 // ID Gypsy-25_PIT-LTR repbase; DNA; PLN; 296 BP. XX AC AATU01001818; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_PIT_; KW Gypsy-25_PIT-I; Gypsy-25_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-296 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001818; Positions 41330 41625. XX SQ Sequence 296 BP; 81 A; 63 C; 69 G; 83 T; 0 other; tgtaatgggc ccctccatta cataagtagg tagatttctt tacaaaagta ggtgcatcag 60 cacacgacta gcgtgtgctg aaatgctgtc atgccattgg ctgatatatg gggagccaga 120 cccattatta gccaattgga ctatgacgtg tatttgagtg gccagggctg tggccttggt 180 cctaaaataa agtcagagtt gatttttcct taaacctaag actcagtcgt cctattgcga 240 gcttcctcaa cactatagtg taagcaagta acggagtaaa tacctggccc gttaca 296 // ID Gypsy-14_PIT-I repbase; DNA; PLN; 8173 BP. XX AC AATU01003137; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PIT_; KW Gypsy-14_PIT-LTR; Gypsy-14_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8173 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003137; Positions 22226 30398. XX CC Positions [6853-7380] - Integrase core CC 'CTAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 3463..4818 FT /product="Gypsy-14_PIT-I_1p" FT /translation="MQYGDKLVDKAPVDYVEGIGGFLLDVIGVWRFKMSSA FT FGEKVTVDACIVSGCVEEFLLGVDFMKKYGAVMDFENSELRYRDEEQSVII FT PFRTYDDIGGARVAIVRMARKTQIENSSVTPVEVAVSAKDGEQGIFIPTVY FT AGSVLLAATVTTVCSGRAWVPAVNTNTKPTRLPSKKQLGTWIPISSEMTIL FT AMDGALDANRMSAWLDEMGDTETPLDDESQVSCGSEEPAARELIMKLLRAY FT RQLTKDTGECPPATALEMYHHIDTGDPAPIMLKRRRQAQTEDAVVEENVDK FT MLGAGVIEEGNGAWGFPVVLVRKKDGEVRFCVDYRALDRVTKKDVYPLPRI FT DETLEALGGALLFTTLDLRAGYWQILVAPEDRDKTAFTTKRGLYRFVRMPF FT GLTNAPSTFQRMMNGVLRGLTWLTCLVYLDDIVVFTRGGIEQHVLSWHVSS FT SDCQLRD" FT CDS 5590..8172 FT /product="Gypsy-14_PIT-I_2p" FT /translation="MTDAARHRPVRAAEKVQADEAPLESAGVADATTISNI FT VFLPVAEEQKDKTDNDDGGNDEVEVTTSAYGNTKKAANVSQVATETSSVVS FT GADVDKKNGTSSVRATYGASMMSTGGTSIRATPTAVPQSTETNTMGPVTRA FT AARRAEEARRQSDANDVADAVEASDTTGIAQDATADEAQRFIMRATDGEGN FT NGDGEIAGTEINDGAAQELPVTGTVSEPEAVRTRRRGPTKERGVENSSERP FT VRESPLNTRKTKEKTTAVSAGDGERRREVVQQTGSMRGSNRKQTVAAKPVQ FT TTSEERRIKLRSTSTRKATGAQTLQLTDTEIMESQKRSKLIRRLLNTGEHR FT GMKVETRFGLVVINTARGRRVIMPPDLWAIVFKESHDSVWAIHLRATHTYA FT RIAEVYWWPDLMREVQKWVRSCQECGSRKARPSEVIPPLRSINGGDVGDRW FT ALDVAGPLPTTDGGHRYVIAAVEYVTRYAVAATVKQHTAENVAKFIMQQVV FT LKFGPFRELLTDGAPELAGLVIEQLIELLQAQQINPVPYRPQMVGLVERFH FT RTWKDGVATYLNSEDQRDWDTWVDFMTYAYNSAQHTTVKLSPNELMMGRRL FT RSPNELLLSTDVREAGELTAYHRKLLAAMKHSSECAERARTKEQQRQAKYY FT NRKTRTKRTIKPGDRVWMFRPPRGPKASKLVHQWVGLMRVIESTGYGNFLI FT EREDTEEEKERYIAHVSFLATYHFPTTLLRRVAEDIEDQLADEDDEKQGGD FT AAAAAKAVRAAPASGQAGVAVSSKKRDRSAVDDEAPEEQSSGVLVELRRRR FT RRNRAEQYVLEYELRPARSADGLNERREVDAGPRWVSLQRYEELFSRDRVV FT EDSVVGED" FT CDS join(98..1378,1382..2425) FT /product="Gypsy-14_PIT-I_3p" FT /translation="MSSTSPARTVMRRRRSKDVERQVDDLVSFATQASSKK FT QRKNGREEQRQGEPEATPTEQTSVVEEASGCEESKQSDSLSNKTLELVDVA FT RVLHGLTAMVAGLQPSMADSQDEVRDIRSGERQTDDAGGGASQSVAVMTRD FT KTNDGESVATVAAALQQLTGAMTNLQMPQSGSQQAERREQPSVEWVTVRQE FT IQRLAERVKTLQMQSSHDELHGPEEAEVHEGRREQPADASTTPSRHHNRSR FT ERREVQRERGHVNHGEHGERRDDRREQRETVRRRRRVDPSPPDDSSSSDES FT RDEDRHRDNNRRSTGQSSSGDSSSSSSDSSSESEGEPERRRRRRYREEHDQ FT RERGRQRGRRGEEGHRRGRSPRRGKNVKDLELPSFTPSPKVSVSTWIDRVD FT LALKGAAESGRGRWSDKSLYFILGNKLMENAAKWVDMDRRFSERKRTWTNL FT KQMLLRRYGEKLDKSAAEWRVSMRRMMPGETHADFAAGLRDVVGRNKVSER FT VLLAQFYRCLDKTTKKLVRQEPQPRTLEEAVDKAMEIDDPMDNVALGTSNI FT GQSWATAPSRYVIPMNGTTGATNVIPGICGTGLPLDITGGTDDGVSMRPEL FT EHVALFTNPQGVYNTFSNTWDPPPGHLWNGRYWYEPRKNVKKTTAAVASSH FT KEAKKPAGKAKRRRDVEDSSDDEFAARPKYRKTKAAVKQTVKPRQQPDSGE FT AKGVQQNSSQPRGDGPGVCYRCNQPGHFANGCPTLKCYACGKLGHMASACT FT DQEAKKRNEAYLKTRIPKEQSAEN" XX SQ Sequence 8173 BP; 2434 A; 1701 C; 2588 G; 1450 T; 0 other; tgtggtcata caggggcatt cgtcagtcaa acgaggaagt gtcacgacga aacgagtacc 60 ggaaagtggg agaacgagtg gtattgcggc agacgagatg tcgtcaacgt ctccggcacg 120 aacagtaatg agaagacgaa ggtcgaagga tgttgaacga caagtcgacg acttggttag 180 ttttgctaca caagcgagct ccaagaaaca acgaaagaat gggcgtgagg agcaacgtca 240 aggagaacca gaggcgacgc caaccgaaca gacgtctgta gttgaagagg cctcgggatg 300 tgaagaatcg aagcaaagcg acagcctcag taacaagacg ctcgagttag tggatgttgc 360 acgagtattg catggactga cagcgatggt ggcggggttg cagcctagca tggctgacag 420 tcaagatgaa gtcagggaca tccgcagtgg agagaggcaa accgatgacg caggaggcgg 480 tgcatcccag agcgtagcgg tgatgacaag ggacaagacc aacgatggag agtcggtggc 540 gacagtggct gcggcactac aacaactgac aggtgccatg acgaatctgc agatgcctca 600 aagtggaagt cagcaggccg agcgcagaga gcaaccgtca gtcgaatggg tgacagtgcg 660 acaggaaatc cagcgattgg cggaaagggt gaagacacta caaatgcagt cgagtcatga 720 cgagttacat ggaccagaag aagccgaggt acatgaaggg agacgcgagc aacctgccga 780 tgcttcgaca acaccatccc gtcaccacaa ccgaagtcga gagcgaagag aagtgcaacg 840 agagcgaggc catgtcaatc acggggagca tggagaacgc agagatgatc gacgcgaaca 900 gcgagagacg gtgcggagaa gacggcgggt agatccatct ccaccggacg acagcagcag 960 ctctgacgag tcacgagatg aagaccgaca tcgagataat aaccgtagaa gcactgggca 1020 aagcagctcg ggggattctt cgagctcgtc gagtgatagc agcagcgaga gcgaaggtga 1080 accagaacga cgacggcgcc gtaggtatcg ggaggaacat gatcaacggg aaagaggaag 1140 acaacgcggt cgacgaggcg aagaggggca tcgacgagga agaagcccga ggcgagggaa 1200 gaacgtgaaa gacttggagc tgccgagttt tacaccttca cccaaagtgt cagtatcaac 1260 gtggatagat cgggtggact tagcattaaa aggggctgcc gagtcaggac gagggcgttg 1320 gtctgacaag tcgctgtact tcatattggg taataagctg atggagaacg cagctaagtg 1380 atgggtcgac atggatagga gattctccga gcggaagaga acttggacga acctaaaaca 1440 aatgttacta cgtcgatacg gagaaaagtt ggacaagtca gctgctgaat ggagggtcag 1500 catgcgtagg atgatgccgg gcgaaacaca tgcggatttc gcggcagggc tgcgagatgt 1560 ggtaggacga aacaaggtca gtgagcgagt gctgctggca cagttctaca gatgtctcga 1620 taaaaccacg aagaagctag tgaggcagga accgcagcct cggacattgg aagaagctgt 1680 ggataaggcc atggagatcg atgatccgat ggacaacgtg gcgttgggta cgagtaatat 1740 tgggcaatcg tgggcgacgg caccgagtcg gtacgtcatc cccatgaacg gaacgacagg 1800 agctacaaac gttatccctg gtatctgcgg tacgggatta cccctggaca ttactggtgg 1860 tacggatgat ggagtcagca tgcgaccgga attagagcac gtagcgctct ttacgaaccc 1920 gcagggcgtg tacaatacgt tctcaaacac ctgggacccc ccgcctggcc atctatggaa 1980 cggaaggtac tggtatgagc cgaggaagaa cgtaaaaaag actacagcgg ctgtggcgag 2040 cagtcacaaa gaagcaaaga aacctgctgg gaaagcaaaa cggaggagag atgtcgagga 2100 ctcgagcgac gatgagtttg cggcaagacc aaaatacagg aagacgaaag cagcggtcaa 2160 acaaacagtg aagcccagac agcaaccgga tagcggagag gccaaaggag tgcagcaaaa 2220 cagcagtcaa ccacgtggcg atggtcctgg cgtatgctat cggtgtaatc aacctggtca 2280 ctttgcgaat ggatgtccaa ccttgaagtg ttatgcatgt gggaaattgg ggcatatggc 2340 aagtgcgtgt actgatcagg aagccaaaaa gcgtaacgag gcgtacttga agacacgcat 2400 acccaaagaa cagtcagcgg aaaactagag acggacgagg taggggtaat acgacgtccg 2460 gcaacagaag gaaatccccg acagatgacg agagacgcca tgctacttgg tacagcaaat 2520 gaggtagcgg tacggacgcc taagaatgct aggacgccaa cataccaaag tgggtcagta 2580 aacattcgag agtcagcgcg tccaggggat cgaggaagta cgagtggcag cgtgggcgca 2640 gtggcacaaa cgacagtgga acgcgaagag aaccagacta agagagtgga tgcaatgttg 2700 gaaaaatggc gagacggggc tgcggagcga gatggtgcga gggctgctat ccacgtgtcg 2760 acagtgagac cagcgatggc ctcggcacga tacaaatacg ctgcatctgc ggatcaacaa 2820 cagaacgagg gctgtggact cgacggcaag cgtcaaactg ggggaaggcg cgtattttat 2880 cagcaccaca gtcggaaacc aacgatggcg aggtgaagag tatcggagag ctgtcggtga 2940 gcacggtcgt gagaaggaaa acgatggctg aggcggagga cacgacgaga gctgcgaggg 3000 acaacggcac gagtaccgcg gagaaggtag acgcacagct aagcgatggt attgcacaaa 3060 tacgtcttac acgtcgaaga gaacggaaac aagctaaacg caagaaaatg atgaacgtgc 3120 gagcacgaca gcgtagtacc gagcagcaag atgcagaaga aatacagcgt gttaccgtcg 3180 agcagttgac caagcgacaa cgagttgcag aagtcgcttt aaacgaagtc gtggggcgga 3240 agcatcagct aaatgagaga aaggcagcga gcgcgctgag aaccgctaga gtgagtctag 3300 tacaacggca aaaacgtgcg gagtgtgacg aggagttggc cagtacggac aatgaggtgg 3360 agtacgtgga agtaaacgac ggattaccga cagctacgat gacagtggca ggagctcgaa 3420 agtgtatcaa gttggacagt caccattgca gggacacaat ggatgcagta tggcgacaaa 3480 ttggtagaca aagcacccgt tgactatgtg gagggcattg gtggctttct cttggatgtc 3540 atcggagtct ggcgatttaa gatgagcagc gcctttggcg agaaggtcac agtagacgcg 3600 tgtattgtgt cgggttgtgt ggaggaattc ctccttggtg tcgactttat gaagaagtac 3660 ggtgcggtca tggacttcga gaacagtgag ctacgctatc gagatgaaga gcaatccgtg 3720 atcatcccgt tcaggaccta tgacgatatc ggtggagcac gtgtggcaat cgtacgaatg 3780 gcacgaaaga cgcagatcga aaatagttcg gtaacgccgg tggaagtggc ggtgtccgca 3840 aaagacggcg agcagggcat cttcattccg acggtatacg caggatcggt gttgttggcg 3900 gcaacagtaa cgacggtgtg cagtggacgt gcgtgggttc cagctgttaa tacgaatacg 3960 aagccgacga gactgccgag caagaagcag ttgggcacgt ggatacccat cagtagcgag 4020 atgacaatac tagcgatgga cggtgcactg gatgcgaata ggatgagtgc gtggctcgac 4080 gagatgggag acacggagac acctttggat gatgaaagcc aagtgagctg tggatccgag 4140 gagccagcag cgcgagagct gatcatgaag ttactacgag cctatcgtca attaacgaaa 4200 gatacaggtg aatgtccacc tgcaactgca ttagagatgt accatcacat tgacacgggg 4260 gaccctgctc cgataatgct gaagagaagg cgtcaggcgc aaacggaaga cgcggttgta 4320 gaagaaaacg tggataaaat gctgggtgca ggtgttattg aagaagggaa cggtgcttgg 4380 gggtttccag tggtactcgt ccggaagaaa gatggcgaag tgaggttctg tgtggattac 4440 cgggctctcg atagggtcac taagaaagac gtgtaccctc ttccaagaat cgacgaaacg 4500 ttagaagcct tgggtggtgc attactcttc actactcttg acctgcgagc tgggtattgg 4560 cagatcttag ttgcgccgga ggatcgtgac aaaactgctt tcacgactaa gagaggactg 4620 tataggtttg ttcgtatgcc atttggctta acgaatgctc cttcaacatt tcagcgaatg 4680 atgaacggtg ttctgcgtgg gttgacgtgg ctaacatgtt tagtttactt ggacgacata 4740 gtggttttca cacgtggagg gatagagcaa catgtgctga gttggcatgt gtcttcgagc 4800 gattgtcagc tgcgggattg acgctcaaac taaagaagtg caagtttgcg gccaaaacga 4860 tggaatattt gggccatcag ctgagttgtg acggggtacg accattaccg aggctaatga 4920 cggctgtaca agagtttcct acacctacag atacagtgga ggcgaagcga tttgtccact 4980 tagcgggata ctacaggagg tttgtgcaag ggtttgggac tctcatggcc ccaatcacta 5040 agttgctgag aaagaatgtg gaatgggaat ggggtgacgc acaggaatca gcgttcggga 5100 gagttaagga gatgcttacg acaaggccct tgctcctata tcctgacttc agtcaaccat 5160 tcagagtaac aacatatgca agccaaacgg gacttggcgc gtgtcttatg caagaccgag 5220 gagacggctg gcagccggtt gcgtatgcaa gcaaggtgaa caatgtagcg gaaagcaagt 5280 atggtatcac ggaactggag tgcttagcgg tggtatgggc gataagactg ttccgacctt 5340 atctctacgg aagacggttt acaattatca cagatcattc agctttgaaa tggctgatga 5400 ccagtccaaa tctgaccggc aagttacatc gttggggcac tcactctaca agaattcgac 5460 tttgaagttc agtaccgacc tggcagcacg aatgtggtgg ctgacgcgct ttcgagagcg 5520 cctgtggctg aaagggtgct agcggcggta ggaagaagac gacgatcgcg gcgacgtgca 5580 gaggcacaca tgacagatgc ggcaaggcat cgaccagtca gagcagcaga gaaagttcaa 5640 gcggatgaag cgccgttaga atcagcaggg gtggcagatg ccacaacgat ctcaaatatc 5700 gtgtttttgc cagttgcaga agagcagaag gataagacgg acaatgacga cggcgggaac 5760 gacgaagtcg aagtgacgac ctcagcatac ggcaatacga agaaagcggc aaatgtgagc 5820 caagtcgcta cggagacgag cagtgtagtg tcaggagctg atgtcgacaa gaagaacgga 5880 acgagcagtg taagggcgac ttacggtgct agcatgatgt ctacgggcgg tacgtcgata 5940 cgagcgacac cgactgccgt gccgcagagt acagagacga atacgatggg gccagtgacc 6000 cgtgcagcag cacgacgagc tgaggaagct agacgccaaa gtgatgcgaa tgatgtggcg 6060 gacgctgtgg aagcgagtga cacgacgggt attgcgcagg acgcaacagc agatgaagcg 6120 caacgattta taatgagggc cacggatgga gaaggcaaca atggtgacgg tgaaattgcg 6180 ggaaccgaaa tcaacgatgg tgctgcgcag gagttaccag taactggaac agtgagtgaa 6240 cctgaagcag taaggacgcg aaggagaggg ccaacgaaag aacggggagt tgagaacagt 6300 agtgaacgac cggtacgcga atcaccatta aataccagga agaccaagga aaagacgaca 6360 gcagtatctg ctggagacgg ggaaagaaga agagaggtgg tgcaacaaac aggatccatg 6420 cgtggtagta acaggaagca gacagtcgca gcaaaacctg tacaaacaac gagcgaagag 6480 cgaagaataa agctacgaag tacaagtacg cggaaggcta cgggcgcgca gacactgcaa 6540 ctaaccgata cggagatcat ggagtcgcag aaaagaagca aactgatccg aagactgctg 6600 aatacgggtg agcatcgcgg catgaaggtg gagacaaggt tcggattggt agtgatcaac 6660 acagcgaggg gtcgacgtgt aatcatgcct ccagatctct gggcaattgt atttaaggag 6720 agtcacgact cagtatgggc tatacatctt agagcaacac atacttacgc aagaattgca 6780 gaggtgtatt ggtggcctga cttaatgcga gaggtacaaa agtgggtgag aagctgtcaa 6840 gaatgcggca gtaggaaagc acgaccaagt gaggtaatac cgcctctcag aagtatcaac 6900 ggaggtgatg ttggagatcg atgggcgcta gatgtagcag gtccactacc cacgactgat 6960 ggagggcacc gttatgtcat agccgcagtc gagtatgtga cgcggtacgc agtggcagct 7020 acagtgaagc aacacacggc agaaaatgtg gccaagttta taatgcagca agtagtactc 7080 aagtttggac catttcgtga gctgttgaca gatggagctc cagagctagc aggcttggtg 7140 attgagcagt tgatagaact tctacaagcg caacagatca accccgtgcc gtacagacca 7200 cagatggttg gattagtgga gagatttcat cgcacgtgga aagacggagt cgctacatac 7260 ctgaacagtg aagaccaacg tgactgggac acctgggtcg acttcatgac gtacgcatat 7320 aactctgcac aacacacgac agtcaaactg tcaccgaacg agttaatgat gggtagaaga 7380 cttcgcagtc cgaacgaatt actactcagc acggacgtac gggaagcagg agagcttaca 7440 gcgtatcaca ggaagctgtt ggcagcgatg aaacacagta gtgagtgtgc tgagcgggca 7500 agaacgaagg agcaacaacg gcaggcaaaa tactacaata ggaaaactcg aacgaaacgg 7560 acgataaaac caggagaccg ggtttggatg tttcggcctc cacgaggacc aaaagcgtct 7620 aaattggtac accaatgggt agggctaatg cgagttattg agtcgacagg atacggcaat 7680 ttcctgatcg aaagagaaga cacagaggag gaaaaagagc ggtacattgc tcacgtatcg 7740 ttcctagcga cctatcactt tcctacaaca ctacttagac gagtggctga ggatattgaa 7800 gaccaactag cagacgagga tgacgagaag caagggggag atgcggcggc ggcagcgaaa 7860 gctgtacgag cagcgccagc atctggacaa gcaggcgttg cagtatcaag taagaaaaga 7920 gaccgaagcg cagtggatga cgaagcgcca gaagagcagt cgagtggcgt cttggtggag 7980 ttacgacgta gaaggagaag gaacagagct gaacagtacg tccttgagta cgagttgcga 8040 ccagcacgat cggcagatgg gcttaatgaa cgacgagaag ttgatgccgg accaagatgg 8100 gtatcccttc agcggtacga agagttgttt agtcgcgaca gagtcgtgga agactctgtg 8160 gttggggaag acg 8173 // ID Gypsy2-I_VC repbase; DNA; PLN; 7200 BP. XX AC scaffold_48; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-VC; KW Gypsy2-LTR_VC; Gypsy2-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-7200 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 111-111 (2008). XX DR Genome; scaffold_48; Positions 50820 58019. XX CC Positions [3150-3623] - Reverse transcriptase CC Positions [5578-6057] - Integrase core CC LTRs are 94% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 4224..5273 FT /product="Gypsy2-I_VC_3p" FT /translation="MHKAGRKNSNVDGLSRLGHLMEPHRNLPTEIDPSPDP FT LEDAAILACSIAAVASEVQILITEQEEECSRGIRPDEPSTVAVHQPPALSL FT PTPEHNPLREATRPLVPLGKRRLDRSARLTSGAPDETPAVQHARQHRRRHA FT VNPRFADYAEPPASASPNSDDDPGMICSVCLQGRPTSTLLLCDEPSCCLGW FT HTTCLDPPLSVVPPGPWFCPLHSSKPAQHSTKRRLSTGPGDTPAKRVRFPR FT SLPTLDTPRPADQRLAGGPAIIHPRATPGRPMADRIPTQGLTPSPSPSLSS FT SSKESDSGPDSNVFTPDSGNSSGETPKPGPLTPTEIWQDKAFIRYLESGKL FT PVDVSGR" FT CDS join(66..2588,2592..4217) FT /product="Gypsy2-I_VC_1p" FT /translation="MESQHQSHFITHPHPSSVSSVPIFRLGDSARQWVARV FT ERCGRMYGWSEEAQLDVAICRLGDEAICWQAGMEASLPDWPSFKAAFLERF FT DPTQEELFSRLAHCRQERGEAVRTYADRYRDLAAQLGVDTQHDPIHMHNFL FT QGLQLKVYNKVFLMRPSSFEDAVRCAIYINEGLDRQDVAGHYEPFPPQRTR FT DMDFHSHPSRATPRWENRHGDLRGNVPDSPTPSGSRPDGPRTPVATQRPMG FT PRQPEQKPAGNAPWQSRPKPKVSTPPENEPLESRVDDIARQLSRLTLLLER FT NPNVQLWERDNTHREDPHFSQMEHPDIYSCFRPAAPPAAYVKRVADFEPIP FT LPRKRPTANPGQDAPQPTTTGRIGIVRPVVTPLASPNAPATATQAHQPQEP FT AAPGAPPPERTAATGGTVPAQRGIASAEPRLRRRVAESGSRSDPIPADPQE FT EERRIAEDIIHKVNKYALPLGTTLRCNPISIYTKVGSRVLGLARQHTNTGN FT PQPGPMFGPARPAAGTMQASLSERPSSTIPAWKSDAVVPPWQVCKATVWII FT DGHGGQVPVPAVIDSGASHSVVTRDTLRRLDLLHLMEETEVTFLNADGNRG FT RAAGRVSELQVSTGDLTMLLSPFVSTALNYQLLLGTDFLYPIRASISYDSS FT RLEYTNDRDQRSNIAIHFLRSPSSNIPPSARLWDDSPEQDDTQPASMLTAE FT ASIQRPEAPTPQGQMSPAAINRGSAPETIDSPEGNSGEVSDGDSTARGDMD FT MEHIVGLLVRQVLRSDEIPSESASSGEWAADAWSTDSVVSSGSEEARANVW FT PGDEFEYDNDSHSGPGPPISTPADPFRSFPETTPVLSSRLLLPRLLTEECA FT SVTHSHAAAAQFDANMPAALAPDGLDHDGHLEEAHFRGLVARAVRPVKSPT FT PELRELLSSKVNTDLQCLDHQQLVACLTDNFDMFALTNRELGRTSWVSMKV FT DTGDHPPIVQNPYRLSRTEKAAVDAEMRQMLQDGIIELSNSPWVSPVVVVP FT KKNGELRPCVDMRRVNDVTKDIRFPIGHIQDILDIAAPPGGETRYYSSLDL FT KSGYWQVPMADEASKERTAFATPTAQYRYVRMPMGLKGAAAVFATLMHKVL FT GPLLEDSPPPPASSDSPPRERCVVVYLDDILIFSPTLQDHVRHLQQVFDLL FT RMAGLKIAAKKCTFGQQRVVFLGHLLDGVRGVVGPNPTNVMKIAELPSPSN FT VREVRAWLGAVGYYRELIPGFGLIAQPLYALLKQGTPWCWGPREEDAFQEL FT RNALLGEPVLRAPGFRRPFLVQVDWCRTAVAACLAQQDNKGYEYAVQFASK FT AMTGPQLNYSAADGEAYAALWAIKHFHPYLYGTHFVLITDSMAVRSLRTAR FT ARDLLGKLARYALKLQAYDF" XX SQ Sequence 7200 BP; 1635 A; 2085 C; 1896 G; 1584 T; 0 other; gccctgtctc tagctacttt cgaacagtct gctaggcgtc ccactggttg tacgtctcat 60 acgccatgga gagccagcat caatctcact ttatcacaca cccccatccc tcgagcgtct 120 cgtctgtgcc tatcttccgg ctgggagaca gtgctcggca atgggtcgcc agggttgaga 180 gatgtggtcg gatgtacggc tggagtgaag aggctcagct ggacgtcgcc atctgccgct 240 taggagatga ggccatctgc tggcaagccg gcatggaagc gtctctcccc gattggccta 300 gctttaaagc cgcgtttctg gaacgattcg atccgaccca agaagagttg tttagccgat 360 tagctcattg tcggcaagaa cggggcgaag ctgtacggac gtacgctgac cgctaccgcg 420 acctagctgc acaactgggc gtggacacgc aacacgaccc catccacatg cataacttct 480 tacaaggact acaactcaag gtttacaaca aggttttcct catgcgccca tctagctttg 540 aagacgccgt acgatgcgcc atctatatca acgagggctt ggaccgccag gatgtggctg 600 gccactacga accgtttccc cctcagcgca cacgcgatat ggatttccac agccatcctt 660 ctcgggctac cccgcgctgg gaaaaccgtc atggcgacct tcgtggtaat gtgcctgatt 720 ccccgacccc tagcggctca cgaccggatg gtccccgaac tccagtggct acacaacgtc 780 ccatgggacc acggcaacca gagcagaagc ccgctgggaa tgctccctgg cagagtcgcc 840 caaaacctaa ggtttcgaca cccccagaga atgaacccct ggagtcacga gttgacgaca 900 tcgcccgcca gttgtcacga ttaaccctgt tgctggagcg caaccctaat gtacaattgt 960 gggaaaggga taacactcat cgtgaagacc cacatttttc ccagatggag catccggaca 1020 tctactcttg tttccggccg gctgccccac cagctgcata tgtcaaacgt gtggccgatt 1080 ttgagcctat accgcttccc cgcaagcgcc caacggctaa ccctggccag gatgcgcctc 1140 agcctactac taccgggcgt ataggcattg tacgacccgt ggtgacaccg ttggcttccc 1200 cgaatgcccc ggctacggct acccaggctc atcagccaca ggagccagca gccccgggtg 1260 cgccacctcc agagcgtact gccgcaaccg gaggtaccgt cccagctcag cgaggcattg 1320 ccagcgctga acctcgtctc cgacgacgag tagctgagtc tggcagccgc agcgatccga 1380 tccctgcgga cccacaagaa gaagaacggc gtattgctga ggacatcatt cataaggtca 1440 acaagtatgc actaccattg ggtacaactc tacgatgcaa ccctatcagc atctacacga 1500 aggttggcag ccgagtcctt gggttggctc gtcagcacac caacactggc aacccccagc 1560 ctggccccat gtttggtcca gcgaggcctg cggcaggcac catgcaagct tctctttcag 1620 agcgaccatc ttcaacaata cccgcctgga agtctgatgc cgtcgtacca ccctggcaag 1680 tttgcaaagc taccgtatgg ataattgatg gacatggagg acaagttccc gtccctgctg 1740 tcatcgattc tggggcttct catagtgttg ttacacgaga cacactacgg cgtttagacc 1800 ttctacacct gatggaggag acggaggtga cgttcctgaa tgcggatggc aatcgtggtc 1860 gggccgctgg acgtgtcagt gaactgcaag tgtccactgg cgacctaacg atgctgctga 1920 gtccgttcgt cagcaccgcc ctcaactatc agctactcct gggcactgac ttcctctacc 1980 caatacgagc aagcatttcg tacgacagta gtcgcctgga atacaccaat gaccgggatc 2040 agcggtccaa cattgctatc cattttcttc ggagccccag ctctaatatt cccccgtctg 2100 ctcggctttg ggacgactca cctgagcaag acgacactca accagcttcc atgttgacgg 2160 ccgaggcatc aatacagcgg cctgaggcgc ccacgccaca agggcagatg tcacctgcgg 2220 ctatcaatag aggctccgcg cctgagacca ttgattcacc tgagggaaac agcggagagg 2280 ttagtgatgg tgattcgaca gcccgtgggg acatggacat ggaacacatc gtcggcctac 2340 ttgtacggca agtgcttagg tcagacgaga ttccgtcgga aagtgcctcc agcggcgaat 2400 gggctgcgga tgcatggagt accgacagcg tcgtcagttc tggcagtgaa gaggctcggg 2460 caaatgtctg gcctggagat gagttcgagt acgacaatga ctcgcactcc ggacctggac 2520 cgccaatatc gacccctgcg gatccattcc gttcttttcc tgaaactact cccgtcttaa 2580 gttcgcgata gctcctgtta ccacgattgc taactgagga gtgtgcttcc gttacccaca 2640 gccatgctgc ggcagcacag tttgatgcga acatgccagc tgcccttgcc ccagacggct 2700 tggatcatga cggacattta gaggaggctc attttcgcgg gttggtagcc cgtgcggttc 2760 ggccagtcaa gagccctacc cctgagctac gcgagttgct aagcagcaaa gtaaacaccg 2820 atcttcagtg cctcgaccac cagcagctgg tcgcatgttt gactgacaac tttgacatgt 2880 tcgccttaac caaccgagag ctagggcgta cgtcctgggt gtccatgaag gtggacacgg 2940 gagatcatcc tcctatcgtg cagaatcctt accgtctgtc acgaacggag aaagccgccg 3000 ttgatgctga gatgcggcag atgctacagg acgggatcat tgaattgtcc aacagtcctt 3060 gggtgtctcc agtagtagtc gttcccaaga aaaacggaga actccggccc tgtgtagata 3120 tgcggagggt caacgacgtc actaaggaca tccggtttcc gataggccac atccaggata 3180 ttttggatat tgctgcacct ccgggtggcg agactcgtta ctactccagc ctggacttga 3240 agtcgggcta ctggcaagtc ccgatggcgg acgaggcttc taaggagcgt acggcatttg 3300 ccacgcccac agctcagtat cgatatgtac gaatgcccat gggtctaaag ggggcagccg 3360 ccgtgttcgc taccctgatg cacaaggttc tgggcccact actagaggat tcgcctccac 3420 cccctgcttc atcggatagc ccaccgcggg aacggtgtgt agtggtttat ctggatgata 3480 tccttatctt cagcccaaca ctacaagatc atgtacgaca tcttcagcaa gtgttcgacc 3540 ttctccgaat ggctggtctc aagatcgcag ctaagaagtg cacgtttggc caacaacgcg 3600 tggttttcct tggtcatcta cttgacggag tacgtggtgt cgtgggacct aaccccacca 3660 acgtcatgaa aattgcagaa cttccgtcgc catccaatgt tcgcgaagta cgagcatggc 3720 tgggagctgt tggttactac cgggaactta tccctggctt cggcttgatt gcacaaccat 3780 tgtatgcgct acttaagcag gggacaccct ggtgctgggg tccaagagaa gaagacgctt 3840 ttcaagagct acgtaatgct ttgctggggg agcctgttct ccgcgcacct ggtttccgac 3900 gcccgttctt ggtccaagtc gactggtgcc gcactgccgt cgccgcgtgc ctggcccagc 3960 aggacaacaa aggatatgaa tacgccgttc agtttgctag taaggctatg actggcccac 4020 agctgaatta cagcgcggca gatggagagg cctacgctgc cttatgggca attaaacact 4080 ttcaccccta cttgtacggc actcattttg tactcatcac ggattcgatg gcggttcggt 4140 ctttgcggac tgcacgcgct cgagatcttc tgggaaagct ggctcgatat gcgctcaagc 4200 ttcaagccta cgacttttaa gtgatgcata aggccggacg caagaattca aacgtggatg 4260 gtttgagccg cttgggacat ctgatggagc cccaccgtaa tttgcctaca gagatcgacc 4320 ccagtccgga cccacttgag gatgccgcca tcttggcatg ctcaattgca gccgtcgcct 4380 ccgaggttca gatcctcata actgaacagg aagaggagtg tagccgcggc atcagaccgg 4440 atgagccgtc cacagtggct gtacaccagc ctccggctct atcgttgcct acaccagagc 4500 acaacccctt gcgtgaagca accagacccc tggtcccgct tggcaagcga cgcttggata 4560 ggtcagctcg tctgacatct ggagcaccag atgagacacc tgcagtacaa cacgcacggc 4620 aacaccgtcg ccgtcacgct gtcaatccac gtttcgcaga ttacgcggag ccacctgctt 4680 cggcaagccc caatagtgat gatgaccctg gaatgatctg ttcggtctgt ctacaagggc 4740 ggccgacatc cactctgctg ctctgcgatg agccttcctg ctgtctgggc tggcacacta 4800 catgtctaga tccaccattg tctgtagtac cgcctgggcc atggttttgc ccacttcata 4860 gtagcaaacc agctcagcat tctacaaagc gtcgtctgtc tactggccct ggcgatacgc 4920 cagccaagcg ggtgcgattt ccccgatccc tgcccacctt ggacacaccc cgtcctgctg 4980 atcagcgatt ggctggaggt ccagccatca ttcacccccg ggccacccca ggtcgcccta 5040 tggccgaccg tattcctact cagggtttga ccccgtcacc ttctccttcc ttgtcttcct 5100 caagcaagga aagcgactca ggtccggatt ccaatgtttt taccccagat agtggtaaca 5160 gctccggcga gacgccgaag cctggacctc ttacccctac agaaatttgg caggataaag 5220 cattcattcg atacttagaa tctggcaagc ttcctgttga cgtttcggga agataatttg 5280 agggagatga caagattacg taaaaaggct gctcggtatg aactttcaaa tggccagctg 5340 tggaagctga gctcggataa gcaatcacgg gtgcgagttc tcaaacctga ggaacgcctg 5400 gcagcgcttc aagaggccca cgacatggct cattggggag tcggcaagac ctatgacttt 5460 ctccgcaagc gtttcttttg ggagaacatg cgacaagatg tgcagacaca cgtggccaag 5520 tgtcagaagt gtgcacctgg caagctgagg cttgtacggc aaccacgact tcgccccctt 5580 ccggtggtac cactgtgggg aagagtacat gttgatctga tgggacctta caaggagaca 5640 cctcgcggca acagctatct gatcgtggct gtagactcat ggtctaaatg gcccgaggca 5700 ggacccctgc cggataagaa agctagcacc actgcatcat ggttctggca acagtgggtg 5760 acccgctatg gatcgcccga aatggtgatg acagatcaag gtcgagaatg ggatggcgag 5820 tttgcccacc tgctacgaga gcagaaaatc gcacatcgac acaccgctgc ctactcacct 5880 cagagcaacg ggcaggcaga gcgtcttgtc agggtgctgt tgacaagcct acgcaaatgc 5940 atcaacgacc aggaagacaa ctgggacatt gaggtctatc aaattctcta tggttataga 6000 gctacccgac aagatagcac gcggttgagc ccggcgctat gtgtgttcgg caaagaactt 6060 acaacggcgg cggaacgcag caccgccccg aatcccacac taccgtctga ggaccctagc 6120 ggaggttagc cccggccagg tggccaggtt tctgaagggg ggggacgcta cagctgtagc 6180 gacctccagc tggtcataga gaactgagtt tgacggcttt ggttgcgtat tgttccgggc 6240 atagcaggag gccgaatact gccatatcat taattagaaa ctataaacgc gttgagaacg 6300 gtcatatact tacggcgcac cgcataaaga ctgacgaatg tatgtttcga tctggcgacg 6360 ttaaagcagg cagcttgtgt cttacgatct agcttcggtc tatggcaaat atcctgtact 6420 agtttcctgt cagtttccgt tggccgccat gaacctggcc cggagctgcg taaactggta 6480 gttcttgtcc tcattgttac actatgataa cgctaaacgg accacagcag cgatgccacc 6540 gggtctggcc ccaaccgacg ctgccaccgt gctgcctatc taccaccgta gttgcatcaa 6600 ccaccactcc gaaccgcggc ttgcgcctcg attacactgc cccgctgatc ggcttagtat 6660 cccccggctt tccctgctga tcggcttaac ccctgcgccc ccccactaat gaccggttat 6720 ttcaagttgg accagtggcc ggccgtgaca cttaggcact caaccacggg cacgacgcct 6780 cccgattctg ctcaaggtct gtgtatcttc tcgacagggc ctcctccctg cccgcgttaa 6840 tgtttgtgaa gacggcattg aagttctgat gctggatcag ctgctctact acttgcgctg 6900 gcacgccttg ggctgccgca ggaggcggaa tgactacatt gttctggttg ttttggatgt 6960 tgttgtttgg aatgttggcg ggcaggattt ggtcagccat tgcgctgatt acgcaaagtg 7020 ttgtagagaa attagaaggt ttataatgat agtatgaacc taaggtcacg aaacggcgaa 7080 tagccaaaac agaacgcagt tcagtgtaat atccatactg aaaacagtac aacaagtaca 7140 acgagtaaca tcttcgtcca agaacccgcc ttctcgcaac gagaagtcta cgcctaccgt 7200 // ID Gypsy-1_CMe-I repbase; DNA; PLN; 12410 BP. XX AC AP006501; XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Cyanidioschyzon merolae genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_CMe_; KW Gypsy-1_CMe-LTR; Gypsy-1_CMe-I. XX OS Cyanidioschyzon merolae OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; OC Cyanidioschyzon. XX RN [1] RP 1-12410 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Cyanidioschyzon merolae genome."; RL Direct Submission to RU (03-MAR-2011). XX DR Genome; AP006501; Positions 430734 418325. XX CC 'CTTCA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2399..9097 FT /product="Gypsy-1_CMe-I_3p" FT /translation="MSTRDAFRKRTVLDAIHALHYIAEQQQAVLLGEYEAQ FT IVRFQRTIRACATRLPEIPTSSHEAAAAAARSALDHAIDSLGNTTMPDTNN FT VASAAASPAEPQRFKVAASYHLPASESSDGCRGPSRETPSIAAPSDDCRDT FT SSHGSLFRRAESHSISSMCESVAPGTRPPGQGWKTWDPRHSLVGLVRPPAA FT SRKSMMLDARARRRRRLTALHERKTNDSRQNSQIPVVLNAPRKEPDPIRSG FT AQSPLPSSSSLERAAAAESDQFAFHDENNDQQLMQDERPNIPSERYAGTRE FT QQRTPAPPESPLGSPASNAGQRQTNQRRGIRERAQRQDRRSHRSPSIQAAE FT RAAPAETDALSIACGRSTRETAGRTSQATKRSRVQRKRAPPQHASEQEAQP FT VSPKRDAVLNAAAPALHGARASPVQRVGSARFSRPSSTCAADGAEADSGAS FT AVPLRPKKRRDSGLARVAPSSETHANDLATRAPRATARRHQQSTADRARAL FT ALELLSPFSRAKAENRTPHKDETYCRRCKGMEDPHLMLLCDRCDDCFHTYC FT CRPPLDQVPQKDWFCEKCAPSAPNLSAAVDQPNTSRMTPMTNISLGQSTPE FT QTRRAPRAPMPRRRQRQAPPSRSRSGADKAARESSVIKRLAPASPERMPTR FT TRRRRRRPQDALQNTSLPPVSRGMASPRTASSKRAERQQSMHGARRATSRA FT PDTISPDQGRGANNRRSASLPEKSARLCNRSRPSLPVAISESLNGALPGLQ FT TRVQIRDAHNVSFTSPCIIRTRNGAADAPHASAGIHQKQAATEQEPVPIEP FT STAGEIHSNWTSAQADDSASAAGSASKALPSPRYDVHHPASTSAAHSESHP FT ERRPSTSQARIDLAAAAAAAALVKQDPAEAASDPVHGSGTSSACPAAALAA FT SPAALSDPQGENFAPAESTSVDPSGAAAADALRLPGPSTTPTTPRVESARL FT AVHGSSFVSQKAAAVSETPPSDMHHRQWTPPRGDIPSSGAAVEACSPCPKH FT LPTRSLVLGDVSPPSPRQPHDNGIADEDTAMRTEAASIPLATDPSSAFRCE FT SMPAPAAEQPAAAQSPSPSAADSPLNPLSWCIQGQLPAALRFSPQHAPSEN FT DVDGMAPDVGERCPGVRSSLEQVTGTVASSCEIPAESRAASGGGAAPRSSL FT QNVTENIADRARWQRMSIRASPAPTPKTGVSPSMSSRRRAASLQETRFAAN FT VPSDSIRKHRSGSGTMSPSQMMSRASVTIDANSRTHCTVTNPGQDVATETI FT RGVQASLQAPAGNEWHTPGSLATRPAFDNASGHSPRMNAAEAGDEALPRTP FT AACSQTKERSLRTPASHLSSPVHRTAPNRRSSAMLSQSPPMRRSLVDPERN FT SAQLEYNEPQKVAAPEAIRTMMALTNGAQRAGSVTCSDFAAECHPSDHAES FT FSTENATETVRARRRSSVHRGAVAPITPLPLPTFARAQHALSASGNATTEA FT SAVDAQASAAMRQLGTSSALPENSAYTMEGVTASQAQMKGTRERSASLSPG FT RHTMHPGRGSASPAPAHRPVAAFAMAPIDSVASPEQVYRARCASPTASGPG FT SFVNATDIEGQIFQLEQTLECDPKLATVPSDDNGALAENADAIRAGSCGQD FT AANGRVGNPDCAADAAQQPAVASDSSSVAMPSCAAPVELAPSAAAAAAAAS FT LVPDSGQATTANAKLARPSRPRSPLSAAGASDQQARRSRSRSPSDATNAID FT GSFHALERSQTATEMLLSVRRAPAASTSVAYDGYDAHALRLADPKRAPAAV FT DETIMPPAHASGTPMPHHTLYAAAAPGGERQPGPGGAPGGVSSRLSRTEAL FT RTRIERLRAMRAGALPVCPSPSRIEAVGAAGDRSSTVQHEMCEDRHRTGRS FT TSRAAPSPPLEQDVSGYGLPGNAAVATASATISAGAVSTRQTHSPARMQVE FT PLQNATELQATGTNSVLKPSPNKAWATLGHARSSPSRYRIVIATMPQSSKR FT VRGASPSPETLKSRMDQRASPNCVPASLKQPTAVDTTSLTPVSATPSRTAV FT KPLVDLNGNPSPRQAPVDAEAPLDVQDAYRQRREEKRRRILEHQRRLALET FT ERQQARLAPLRQQQVVASGLLKSHGTKPASQIAAAAAAAAAAAAADEAPAE FT YPLTPERHHSADASDDESAAVPAAKRHLIPEWARSHRLYGALIEQTRVDPD FT TIFPRVHTCDLVDIFGGGTNRPRYRRRTSSGDWVRDRLTWREEAAYRKALG FT FDP" FT CDS 10423..11922 FT /product="Gypsy-1_CMe-I_2p" FT /translation="MPLVRTSHDASFANFAHLTDKSLEKALLEEIRQINER FT ATDVRARMSEAEQQGFVHLLGRYLETRSSASAALDWDQIQPPSAELLRPYA FT ELPEPNETEARALLSRVAVLKLNGGLGTSMGCSGPKSVIEIRSGQTFLDII FT VKQIESINKRYQIKVPLLLMNSFNTDADTLKVIRKYEDLIPIRTFQQSRYP FT RLVRDTLRPLCLDSEVYDKEDWYPPGHGDMYDALLQSGMLDRLLAEGKEWI FT FVSNSDNLGASLDTRILKAIADHQVEFTIEMATRTRSDRKGGTLITYQGKP FT RLLEVAQVDKEHLGDFQNISKFRVFNTNSLWIQLKALKRIMDRGPGSMELD FT IIPNTKTVKGETVLQLETAMGAAITHFQRVMGINVPRSRFLPVKTTSDLLL FT IQSNLYNIVSGYVSMNPERPAELGTPVIRLGPEFKKVSDFSSRFESMPDIL FT ELESLTVSGSVRFGKRCKLSGTVIIVAQPGASIDIPAGSRLENCVVTGNLH FT VLDV" XX SQ Sequence 12410 BP; 2672 A; 3834 C; 3615 G; 2289 T; 0 other; tgacaatgct tggagaccgg actctagcgt agatgccctt gtgaattgaa tctacccata 60 ccattcttat ctggtatggg tgtaaatgct cgaaagtcgc gcgtgtcgtt ccgtttgctg 120 gcctaaactg ctgcgatact tgcacagtca cgtttacaac ataggatccg cgcatctctt 180 tgagatgacg caccagcgcg ggaacgccaa aacccttccg cttccgtgca gtgtcctgaa 240 cggtgctact ggcgtcttta tacgcactca tcgtcggctc ggcacctaca agcttgtatg 300 aatggactat gtttttcgag tggaagccta ggtggtgatc catgaaactc tgcgctactg 360 ctgcatgata gatgcctccc tcgatgccga taaagatcgc gcacctgcag atcccccgtt 420 cgattccgca accgcacatc ttccaaaaat acttgaatct gatcagaatg ccttgcatgc 480 atggacgctg ccagttgctg gcatctccag cgctcatcag caccggggca tgtgcacgat 540 acacagtgca tgcgaaccct gggagcgccc acaggagtcg actgcaaaag catcgtaatg 600 attggatccc ggccgctggc tggcgattac ccgtatacga gggattcatc gctctgccgg 660 atgcgtatcc atactagtcg cggcggtagg cgctgcgaac gtcgcttctt aggtccacga 720 cgacgcagga gcagtcgccg aacactgcgt caagcgcctc tgtacgcaac catacatgcg 780 attcgtgata atcctgattt tctcaggata ttggacagga actgcggttt tttattcaac 840 gcaacctcca gaggcaacgt ctggagcggc cgattcgcga gccgtgccac ggtgcagcgg 900 ctgggggcac ttcgaaagcg gccttgccag gctcgctgtt caaaatcatg atcacactgc 960 agatgctcct tgaatatcga tccccgtcgt cccgaaaata ccggggcagc agtcgggact 1020 ccggggcttg gcagcgccag taccaccaac gacatcgggt cgcgctacga taaacgttat 1080 aagaatggaa agctttctac attgccgaac gtgaatctcc taagcggaag gtccgcgagc 1140 cggacgagtc tgcaagacga gtgcttcatg ctccctccag tggcaggtgc tgtggagaga 1200 cccgcgcagc tcgttcgcaa agcagttcat tctgggacta gacgcaggaa agctgcatct 1260 gggcatcgca ctggtcgcag tggactcctg gtagatcggt tcgcgctgtc gcaggctccc 1320 agaattacta tgtactccgg ccccgtatcg aatgaaccac gtctcgagcc gacgctctca 1380 gtggtatggc aaagctgttc tgtcgccgtg cagcatctgc tgcagcggtg gaagcgcttc 1440 ggcgggtgcc cacagcaggc actcggcgct cgatagaaca tacgaaacga ccagtaaatc 1500 cgagaggaag tatagctatt ggaacttgaa ggtaggtggt tcatcatgga cactttttca 1560 agagccatta tacatccatc catcccgaat tctgggatcc atggtcaatg gttatcgttt 1620 cgtcatcaga aatatcggcc cgcgctccgt ggatcacgca gccacgctga acgcgtacca 1680 ccacggctgc ctcgcatcac tgggagcata ctagacataa gcgaacataa atgaataaac 1740 cagaccctct cctgaacctc gcatccgtcg atttgaattc ccgacgcgat cgcatcatcg 1800 tgggagacgg ccgcctcgcg ctgccggctg cggcacccag tgtgtccctg caccgagaag 1860 gcgagccacg ttccgcgctc ggacggcatc gagcgcgtgc gtcgagctct tctcccccca 1920 ctgaacgggc ctgtcgagtt tatctgcacc agacagagcc cttctttgat ccggggcgtt 1980 atcgccctgt tttaccgcct gctaaactcc aggagagccg gcgcttccaa cgccacgtgt 2040 gggcgtatcg ctgcgctccg ggactgttcg acgctgcgac ctgggatcgc gctgctcgcc 2100 gagcacgagc gtaacgtgaa cgggcagcag acatcagagg cagctttgtg tgccgagtca 2160 tcagggcacg ggagcgaaca agacagttgt gtaaggccgc gcgtttgcac gtcgccgctg 2220 cgtgtcgttt cagcaccgct cgacctcgct gtgctatcgg gacttggcag cagtaccgtg 2280 gcgccgcctc ggagtgacgt gcttcgaact tgtccaagca accggctttc gaccaggaga 2340 aacatacctt ttacgcggta caagaggacg ctagtgggct ttcgagttgt gagcgccaat 2400 gtctacgcgc gacgcttttc gaaagcggac agttttggac gccattcatg cgctccacta 2460 cattgcagag caacagcagg ctgttctact gggcgaatat gaagcacaaa tcgttcggtt 2520 ccaacggacg attcgcgcgt gtgcgacaag gttgccagag attccgacta gcagtcacga 2580 ggcggcggcg gcggcggcaa gaagcgcgct tgatcacgcc attgactcgc tggggaacac 2640 cacaatgccc gacacgaaca acgtcgccag tgccgctgca tcgccagcag aaccgcaacg 2700 cttcaaggta gcggcgtcat atcatttgcc agcaagtgaa tcatccgatg gctgtcgagg 2760 tccaagtcgc gaaacaccct caattgctgc tccgtccgac gattgtcgag acaccagctc 2820 acacggctcg ctcttccgtc gtgctgaaag ccacagcatc tcaagcatgt gcgagtcagt 2880 cgcaccgggc acgaggccac ccggccaggg atggaagacc tgggacccgc ggcattcgct 2940 cgtaggcctt gtgcggccgc ccgcggcatc gcgaaagagc atgatgctgg acgctcgcgc 3000 gcgccgacgc cgtcgtctca ctgcactaca cgagcgcaaa accaatgact ctagacaaaa 3060 ttcccagata ccggtcgtac tgaacgcgcc acgaaaagag ccagacccga tcaggtctgg 3120 cgcccagtcg ccactgccgt cgtcgtcatc gttggaacgt gccgctgcag cagaatccga 3180 tcagttcgcg ttccacgacg agaacaatga tcaacagctc atgcaagacg agcgccccaa 3240 cattccatcg gagcgttacg ctggcacccg agaacagcag cgcacacctg caccgccaga 3300 gtcgccgctt ggatcgcctg cctccaacgc agggcagcgt caaacgaacc agcgacgagg 3360 cataagagag cgcgcacagc gccaagaccg ccgctctcac cggtcaccct cgatacaggc 3420 agccgaaagg gcagcaccag cggaaacgga tgcgctcagt atcgcctgcg ggcgatcaac 3480 gagagagaca gccggtcgca cctcgcaagc caccaaaagg tcacgcgtgc aacgaaagcg 3540 tgctccgcca cagcacgcat ctgagcagga agcgcaaccc gtttcaccta agcgcgatgc 3600 ggtgctaaat gcagcagcac cggccttaca tggtgcccgc gcgtcgcccg tgcagcgcgt 3660 tggaagcgcg cgcttctcac gaccctcttc cacatgtgcc gctgatggag cagaggcaga 3720 ctcaggtgca tccgctgtac cgttgcgacc gaaaaaacgg cgagattctg gtctggctcg 3780 agtagcgcca tcgtctgaga cgcacgcgaa cgacctcgcc acacgagcac cccgtgcgac 3840 tgctcgacgg catcagcaaa gcactgcaga tcgtgcgcgg gcattggccc tagagctact 3900 gtcgccgttc tcacgggcca aggcggagaa tcgaaccccg cacaaggacg agacgtactg 3960 ccgacgatgc aagggcatgg aggaccccca tctgatgctt ctatgtgatc gatgcgatga 4020 ctgtttccac acgtactgct gtaggccgcc gctggaccag gtgccccaga aggattggtt 4080 ctgcgaaaag tgcgcgccaa gcgctcctaa cctgagcgca gctgtcgacc aacccaacac 4140 gagcagaatg acgcccatga cgaacatatc gctgggccag agcactccag agcaaacgcg 4200 acgagcaccg cgagcgccaa tgccgagacg ccgtcaacgg caggcgccgc cgtccaggtc 4260 acgctctggt gcggacaaag cagcgcggga gtcgtcggta atcaagcgcc tagcgcccgc 4320 tagtcccgag cgaatgccga cccgaacacg acggcgtcgg cgccgtcccc aagacgctct 4380 gcagaacacg tccctaccgc cggtatccag aggcatggca tcgccaagaa cagcgtcgtc 4440 gaaacgagcg gagcggcagc agtcgatgca tggtgctcgg cgcgcaacat cgagggctcc 4500 agacaccata tcaccggatc agggccgagg cgcgaataac aggcgaagcg cttcgctgcc 4560 tgaaaaaagc gcccgcctat gcaatcgatc gcgtccctcg cttccggtgg caatatcgga 4620 aagtctcaat ggagccctgc cagggcttca gactcgagtg caaattcgcg atgcgcacaa 4680 cgtttcgttc acgagcccgt gcatcattcg aacacgaaac ggagcggcgg atgcgcccca 4740 tgcgtcagct ggaatacatc agaagcaagc agcaaccgag caggagccgg tgcccataga 4800 gccgtccact gctggagaga ttcattcaaa ctggacgtcc gcgcaagccg acgattcggc 4860 atcggctgca gggagtgcca gcaaagcgct gccttcgccg cggtacgatg tgcatcaccc 4920 ggcctcgaca tctgctgcac attcagagtc gcatccagaa cgtcgaccgt cgacgagcca 4980 agcccgtatc gatttggcgg cggcggcggc ggcggcggct ttggtgaagc aggaccctgc 5040 ggaggccgct tcagaccccg tacatggctc agggacatcc agtgcttgtc cagctgcagc 5100 attggcagct tcgcccgcgg ccctgagcga cccgcaaggc gaaaatttcg cgcccgcgga 5160 atcgacatct gtggatccct ctggagccgc agcggccgat gcgctgcgcc tgcctgggcc 5220 cagtacgacg ccaacgacgc ctcgggtcga aagcgccagg ctagctgttc acggatcatc 5280 gttcgtatcg caaaaagctg cagcagtgtc ggaaacgccg ccaagcgata tgcatcacag 5340 gcaatggacg ccgccgcgcg gcgatattcc atccagcggg gcagcagtcg aggcatgcag 5400 tccctgcccc aagcatcttc cgacgcgctc gttggtgctc ggggacgtct cgccgccatc 5460 accgcgacaa ccgcatgata atggcatcgc ggacgaggac acagctatgc gcacggaggc 5520 cgcgagcata cctctggcta ctgatccgtc atctgcgttt cgctgcgaat cgatgcccgc 5580 acctgccgct gaacagcctg cagcagcgca gtcgccatcg cccagcgctg ctgattcacc 5640 actgaaccct ctctcttggt gcattcaggg tcagttgcct gccgcgctgc gctttagtcc 5700 gcaacacgcc ccatccgaga acgacgtcga tggaatggca ccagatgtgg gtgaacggtg 5760 tccaggagtg aggtcatcgc tcgagcaagt caccgggacc gtggcgagca gttgcgaaat 5820 cccagccgaa tccagagcag cgtctggggg tggtgcagct ccgcggtcca gcctccaaaa 5880 cgtcaccgag aatatcgcag atagagcgcg atggcaacga atgtcgataa gggcgtcgcc 5940 agcgccgaca ccaaaaaccg gtgtatcgcc atcgatgtcc agcagacgcc gtgcagcgtc 6000 tttgcaggag acgcgctttg cggctaatgt gccatctgac tcgattcgta agcatcgctc 6060 agggtcaggc accatgtcgc cgagccagat gatgtcgcgc gcatcagtca ctatcgatgc 6120 gaacagtcgc acacattgca ctgtgacaaa tcccggccaa gacgttgcca cagagaccat 6180 caggggtgtt caggcttcgc tacaggcccc tgctggcaac gagtggcata ctccagggtc 6240 tctcgcaacg cgcccagctt ttgataacgc ttcagggcat tcgccgcgga tgaacgctgc 6300 cgaagcgggc gatgaggccc tgccccgaac accggcagcg tgctcccaga ccaaggagcg 6360 ctcactgcgt accccggcat cgcatctatc gtctccggtg catcgaacag caccgaatcg 6420 acgtagctcc gcaatgcttt cgcaatcacc gccaatgcgg cggtcgttag tggatccaga 6480 gcggaacagc gcacagctcg aatacaacga accccaaaag gttgcggcgc cagaggcgat 6540 ccgcacaatg atggccttga cgaatggcgc ccagcgtgcc ggcagcgtca cctgcagcga 6600 cttcgccgcc gaatgccacc cgagcgacca tgctgaatcg ttttccacgg agaatgccac 6660 agagacggtt cgggcacgac gccgatcgtc tgtgcatcga ggagctgtcg cgccgataac 6720 gccattgccg ctgccaacct tcgcgcgagc gcagcatgcc ctgagtgcca gtggcaatgc 6780 taccacggaa gcttcggctg ttgatgcgca agcgtcggcg gcgatgcgcc agctgggcac 6840 gtccagcgct ctgcccgaga acagcgccta cacaatggag ggcgtgacgg catctcaagc 6900 gcagatgaag ggtacacgcg agcgttcggc ttcactgagc cccgggcggc atacaatgca 6960 cccgggccgt gggtccgcgt cacctgcgcc agcgcatcgg ccagttgccg cgttcgcgat 7020 ggcgccaatc gactcggttg cgagcccaga acaggtttat cgcgcgcgct gcgcttcgcc 7080 aaccgcatcc ggccccggct cgttcgtgaa tgcgaccgac attgaaggcc agattttcca 7140 actggaacag acgctcgaat gcgacccaaa attggccaca gtaccgagcg acgacaacgg 7200 cgcacttgcg gaaaacgcgg atgcgatccg agctgggtca tgtggccagg atgcagcgaa 7260 tgggcgagtc gggaacccgg actgcgcggc ggacgcggca cagcaacccg ctgtggcgag 7320 cgactccagt tcggtagcga tgccgagctg cgcggcgccg gtcgaactag cgccatcagc 7380 agcggcagcg gcagcggcag cgtcgctggt accggattcc ggccaggcga cgactgccaa 7440 cgccaaacta gcgaggccca gccgtcctcg ctcgccattg agtgcagctg gtgcaagtga 7500 ccagcaagcg agacgctcac gatcgcgcag tccatctgac gccacgaacg cgatagacgg 7560 gtcgttccat gcgctcgagc gctcgcaaac tgcgacggag atgctgcttt ccgttcgtag 7620 ggcgccggca gcgtcaacca gcgtcgcata cgacggctac gacgctcacg cactgcgact 7680 tgcagacccg aagcgcgctc ccgcagcggt agacgaaacg atcatgccac cagcgcacgc 7740 cagtggaacg cccatgccgc accataccct ctacgctgca gctgcgcctg gtggtgagcg 7800 ccagccggga cctggcggtg ctcctggcgg tgtttctagc aggctctcga gaaccgaggc 7860 cctgcgcacg cgcatcgagc ggttgcgcgc gatgcgtgct ggagcgctcc cggtgtgccc 7920 cagtcccagt cggatcgaag ctgtgggagc tgccggcgac cgaagctcga cggtccagca 7980 cgaaatgtgc gaggatcgcc atcgcaccgg gcgctccacg tcgagagctg cgccatcgcc 8040 tccgctggag caggatgtca gcggctatgg tctgccgggg aacgctgccg tcgccaccgc 8100 atccgctaca atttccgctg gagcggtttc cactcgtcag acgcattcac cagcgcgcat 8160 gcaagtagaa ccgctgcaga acgccactga gctgcaagcc accggcacaa attcggtgct 8220 gaaaccgtca ccaaacaaag catgggcaac gctggggcac gcaaggagca gcccgtctcg 8280 ttaccggatc gtcatagcca caatgcctca atcgagcaag cgcgtgcgcg gggcttcgcc 8340 cagccccgag acgctcaaga gtcggatgga tcagcgcgcc tcgccgaact gcgtcccagc 8400 ttcgctgaaa caacccacag cagtggacac gacgtcgctt acgcctgtct cagcgacgcc 8460 ttcgcgcaca gcagtgaagc ccctggtcga tctcaacggg aatccatctc caaggcaagc 8520 tcccgtggat gcagaggcgc ccctcgatgt ccaggacgca taccgccaac ggcgcgagga 8580 gaaacgacgc cgcattttgg agcatcaaag aaggctcgca ctggagaccg agcgccagca 8640 ggcacgtctt gcgccgctcc gtcaacaaca ggtcgtagcg agtggtctgc tcaagtcgca 8700 tgggacaaag ccagcgtccc agatagctgc tgccgctgct gctgctgctg ctgctgccgc 8760 cgcggacgag gctcccgcgg agtacccgct gactccggag cgacaccact cggcggatgc 8820 ctcggatgat gagagcgctg cggtgcccgc tgctaagcgg cacctcatac cggaatgggc 8880 gcggagccat cgtctctatg gagcattaat cgagcaaacg cgtgtcgatc cagacaccat 8940 atttccccgc gtccatacct gcgacctggt cgatatcttc ggcggcggga caaatcgtcc 9000 gagatatcga cgtcgcactt ccagcggcga ctgggtccgt gatcgcctca cctggcgcga 9060 ggaggctgca tatcgcaagg ccctgggctt tgacccgtag cgctgcgcac gtacccagct 9120 aacgtgcaag tcggcgtgga gcggtccgcg cttaccgcta ccagcaagcg cgtccgagtg 9180 caatcgaagc gtccacgagg gtgccggcac ccgtgcaacg tgcacgcccc gcctttaggc 9240 tgcacacacg ccagccgcgc atcatcctaa acgacgtgtt gttgtcactg attcttgtct 9300 acgcggctat aaaaacgcct ccgctcaagc ttcaacccag ctgttgatgc gagcaccgga 9360 cgcgagtggc gcctcttgcc aagttgtccg ttgcaccctc gaggcagcgc gctccgaggt 9420 cacctgacgc gctgccgctg aaaactcacg tagacgtcac gcaggcattc gactttgggc 9480 agctactcgc tgggaagagc aggataccgc gacggaatga ccccaacgag caccccggag 9540 agcgtgcagt gccctgaagc gcgctgcttt gtacggaacg cgtctatgag cgcagcgctg 9600 gcatgccccg gctccaggcg tttgcgcggg aaatgcatgc acgcatgcaa tgcaccatgc 9660 gtgctgccac tgcgcacgca tgcacccgcc tacgattgtt cttggtctag cgtccgtgtt 9720 ccaagggaga tgccctggat gcatgcatgc atgttcccgc gaatcaaaca aaagcctaca 9780 gcacattcac agtgaatctg ccgttccgcg tgcgcctgat cagtctgcaa gccgggcgtc 9840 cgagattcca tccgctcaac gactgtggat gtctcgtttg tatcccagcc gttcgccgcg 9900 acgatcagtg ccctgcacag cgcagacaga acgacgtgac gttctcgttc cggacatgaa 9960 atggacgtct cgttcactgg tgtgctcggg gtacgcttag cgcgcgctcc agcattcagc 10020 ggatcaacgc gcgctccagc tggcgggcga tccgctcggg cgccgcgcga tgtgtggtct 10080 acgtgcgtgc ctgcgtacgg cgcgtatacg tgtcggcatt cgctgcgacg caggcaggca 10140 ggcagccagc gaatgcgcgg cgatccaaag gcgctcgtgt ggcaataatg cgcgcaatgc 10200 gccacgcgcc gggtaaatag caggcgacga cggagacttc acacgtgttc ttcgttgttc 10260 aagtaggtgg tatcactgtg aacggcacca gcaagctcgt tactggtgac ttactgctct 10320 aatttgaagc aaggtcaaga caagtctact tacttgagcg tcgtgcgtgc ttgaaacgag 10380 tgaagagctc tggagcggtg tccacactct tacccgaaca cgatgccttt ggtgcgaacc 10440 agccacgatg cctcttttgc gaacttcgct cacctcacag acaagtctct ggagaaggca 10500 ctgttggagg aaatacgtca aatcaatgaa agggcgactg acgtacgtgc acgcatgagc 10560 gaagcagaac aacagggttt tgtgcacctg ttgggtcggt acctggagac gcgctccagt 10620 gcgtccgcgg cactggattg ggaccagatc cagccgccat cggcggagct attgcgaccc 10680 tacgcagaac tacccgaacc gaacgaaact gaggcgcgag cgcttctaag ccgcgtcgct 10740 gtactgaagc tgaacggagg cctcggcacc tcgatggggt gctcgggccc caagtccgtg 10800 atcgaaatcc gctcgggaca gacgtttttg gacattatcg tgaagcagat cgagtccatc 10860 aacaagcggt atcaaatcaa ggtgcctctt ctcctaatga atagttttaa cacggatgcg 10920 gatacactga aagtcattcg aaagtacgag gatctcattc cgattcgtac gtttcagcag 10980 tctaggtatc cgcgtctggt gcgcgacaca ctgcgacccc tgtgcctcga ctctgaagtg 11040 tacgacaagg aggactggta cccgccgggt cacggcgaca tgtatgatgc gcttctgcaa 11100 tcgggcatgc tggatcggct gctcgccgag ggcaaggaat ggatattcgt gagtaacagt 11160 gacaaccttg gagcgtcctt ggatacgcgg attctcaaag caatcgcgga tcatcaggtt 11220 gaatttacaa tcgaaatggc aacgagaact cgctccgatc ggaaaggagg cacgctgatc 11280 acgtaccaag gcaagccgag gttgctagaa gtcgcgcagg tcgataagga gcacttggga 11340 gatttccaga acatatccaa attccgagta ttcaatacca atagtttgtg gatccaactc 11400 aaggcgctca agcgaatcat ggacagagga cctggctcca tggagctgga tattatcccc 11460 aacacgaaga ctgtgaaagg cgaaaccgtg ctgcagctcg agacggctat gggtgctgcc 11520 attacccatt tccagcgcgt catgggtatt aacgttccac ggagccgttt cctgcccgtc 11580 aagacaacat ccgatctgct cttgattcaa agtaatctct ataatatcgt ctcggggtat 11640 gttagtatga atccggagcg tccggctgaa ctcggcacgc cagtcattcg gttgggtcca 11700 gaattcaaaa aagtgagcga ctttagtagc cgtttcgaga gtatgccgga tattttagaa 11760 ttagagtcat taactgtcag tggcagtgtg cgcttcggca aacgctgcaa actgagcggt 11820 acggtcatca ttgtcgccca gccgggagcg tctattgata ttccggcggg gtctcggctc 11880 gagaactgcg tggttaccgg taaccttcat gttttggacg tgtgaatcag ggcgggtgct 11940 tcgcgtcgtg catcagcgaa gaagggtttc agcgttaccc atcgcgacgc agcattctct 12000 acttttcgat gacgccagcg tgccgtggtc tcctgcatcg cctattctcc gctatccatg 12060 taccatagtt cttcgcgtgt atgattttca tatgggaggt gctgttcagt aaacggtatg 12120 ggagaggtgc actccgggcg cactgtacaa ccacagcatc ataggtgcgg gtccgcagct 12180 gatgcaggcg ctgcagcccg tcatgtgccg ccagtaccgc agggtttttg gcgtgcgcta 12240 gcgctcagcg ccggttgcct agaagttggt gcctgcttgc gatttgttct agccgccagc 12300 accgctgtgc aacctccaat tgtgcagacg gcacctttgc gcgatctatg cgcttgccgc 12360 ctcgagccga tacccctgca ctcgtataag ggttgtaggg aacactgaag 12410 // ID MGRL3_LTR repbase; DNA; PLN; 250 BP. XX AC AF314096; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Magnaporthe grisea gypsy-type retrotransposon MGRL3_LTR, long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; Long terminal repeat; MGRL3_LTR; gag; pol; KW retrotransposon. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-250 RA Kang S.; RT "Organization and distribution pattern of MGLR-3, a novel RT retrotransposon in the rice blast fungus Magnaporthe grisea."; RL Fungal Genet. Biol 32(1), 11-19 (2001). XX DR Genbank; AF314096; Positions 1122 1371. XX SQ Sequence 250 BP; 47 A; 67 C; 62 G; 74 T; 0 other; tgttacggag tggcgtgcct gggcgactgc caaccgtgac tagctccacc tcacgtgaca 60 aggcgccagg gtgagtttgt tatttgttcg cttaggcgcg tgtacgcgat tggcactgcg 120 tgcctttctt cttcctttac acttagcttt agatcttcga atagaatcgc ccctatattg 180 cagccttgtc tctctgggat cgctttcgtg acattatcta aagctcaacc aatcagctac 240 cgggaacggt 250 // ID Copia-8_PR-I repbase; DNA; PLN; 6265 BP. XX AC AAQX01003090; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PR_; KW Copia-8_PR-LTR; Copia-8_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6265 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003090; Positions 3496 9760. XX CC Positions [1940-2479] - Integrase core CC 'TTCTT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1760..4684 FT /product="Copia-8_PR-I_1p" FT /translation="MLLHKRLGHPNIRVLQALTKDQALHGLDANTGVPKDN FT FFCSACTYAKSHRAAFPSNRRVERASIPLQKVHSDICGPLPVSSLSGCRYF FT VVFIDDFTRYMFAYPIKTRSQLYSCYEDFRMKALNIFRSDVHTLEYPGPTS FT DLDVQVLQADNAKEYEKLGRIVLKRYGTHAQFTNAYTPQQNGVAERRMRTI FT LERVRALQLDAKLPKALWAECVSHVTTLLNMTPSENTYTCSPYELWYNRKP FT SVQYLKVFGCAAYAHINDIYRDKLDARAKLCLYLGIPSHKKGYRLMDVSTK FT AIVYSRDVVFQEDSFPTLEDVDDAPDPLPLPAHLVDTAPSGDSPTSNIQTS FT QSPRVGPSSPPKVGPDVPPLITPAATPTPLNDATDANDRGEIIYSFVTETP FT STPPQSPAKRPRHEEAVNLTELKSEEDTQENNERTTQTLSLLATRYVPEPK FT SYKAAMKSPYARQWRIAAESEFASLMNNETWALLPPPKGRRVLQNRWVFVV FT KYTGSGEIDRFKARLVIKGFLQQYGIDYNEIFSPVIRMEVLRLLLVIAALL FT DYEVHQMDVKTAFLNGFLSEEIYMAQPEGFAAAGQEHLVCKLLKSLYRLKQ FT APRIWYQTLCAFLERLGFHKLIKDSCVFMATFDGQVCYIAVYVDDLLIIAP FT TVSLVCRIKSALKQRFSMTDLGEVKYILGWSIERNRKARTIFIHQQKYATN FT VLDKFKHLISYPTATPSDRSIKLTKAMEPQTQEEREAMKDIPYREVVGSLM FT YLMVGTRPDLACYMREVSQFLVNPGKEHWKAVVRGLKYLSGTTDQGLLLGG FT STSVDASNLADHLTAYTDSDYANCPDTRRSVGGYVTMIGTSPVSWLSRNHH FT TVVLSTTEAEYIALCHCMQEVIFLKLLLKELGFTTSKATVIMEDNQSCIKI FT ASNPELHGRSKHIDIRYHFVQEKVERHEFSVVYCNTKSMVADIFTKSLDKH FT QFRNLRRQLGMQSFKELANR" XX SQ Sequence 6265 BP; 1640 A; 1746 C; 1503 G; 1376 T; 0 other; ggttatgagt cccaaccgag cctcaagtga cgacttccct cgactttccg gctcaaggaa 60 ctacgacgtg tggaagaccc gagtcacggc atcgcttgat ggtaagcacc tgctcggttt 120 cgtcacgaag aaggactacg acgggttaag cagcgacgac gatgacgaag actcgtccga 180 cagcgagatg tccgactctg ccgacggtgg cgctacggtc tcctcgccag ccgactatga 240 ctcgcaaacc gtcgactacg agccaagctc tgacgaagac gcgtccgacg gtgaagaaga 300 tgccaagacc agcgcgaagc ccaagccatc ctccccggta cgctcgtttt cgcagcgcaa 360 gtcgcagcgt cggctgctaa ggagaagcgc gtgccactgt cttcccgccg cctccgtcgc 420 atagagacgc ataccatgtc attccagacg aagacgatgg acgacacgca catacgtctg 480 gtcaagaacc tcaccacggc ttacgacatc ttccaagcta tctgcaagaa gtacgagggt 540 gccgcgttcc atggcgaccc gtactatgta ctatattctg cacttcctca tggaaaccaa 600 gtacgaggaa gggagtgacg tgaatgagtt ctttctcatc ctcgaagacg cgatgcgagc 660 cgcgtccaag gcgaccgaat cggtcctcac cgacggacaa aagtctgtct acctgttcca 720 ctctatgcca gcgtcctgga aggacgacct gcgcatttgg aaaggtaacc ggaagtacat 780 cccgtatgac gagctcaaga cgagcatcga ggacaagatc cgcaaaatgg aggctgagac 840 gcgttacact ctggcgaagg gtacccctga aagtcgcact accaagggag agcgggctct 900 cattgctcca gcccaagcgc cggcacgtcc ggtgaccgac agccaggtct gcagctactg 960 ccagaagcct cgccatgata ttcggcaatg tcgagggctg caaaaggacc ttcggggtgg 1020 tactgtgaag gtggggaccg tcctgcctgc gaactttgag ttccgcggtg gaaactctaa 1080 ccggtcccac ccctacgaat gacgtggcaa caactccggt cgtggacgtg gatcctggaa 1140 gactggcggt cgaggtcgga ccaacggcgg tcggggtggc aacaaccgcg acaacaacag 1200 caagggacat cagcaatctc gtcgtgatga aggtggatat gatcagttcc gccgtgaaga 1260 agcacgcatc gctgtcgcga cagtggtcaa gcctgttcca cccgccatca gcctaacggc 1320 tcaagcatcc accaccttcg accccagctg gacggtcgac tcgggctgca ccagccatgt 1380 cacccagcat gccgagtggt tcgtttcgaa gactcctgct actggcacga ttacggtcgg 1440 tgggaagtct gagataccca ttgaaggcac aggtgatgtc gtccttcagg tgaccgattc 1500 taagggaggt cagcgacagc tgacgttgcg tgacgtactt tacgcaccgc agcttcacta 1560 caacctgctg tcggtcgctg ccgctgtgga acacgatttc cgcttcacgt tccagcgagc 1620 cgtgtgcacg gttcagaccg accaccgctt caacctcaag gcgaagaagt caaccactgc 1680 gaagctgtac cagtttacgg ccacgccgat ccagaagcaa gaagcccacg tggctacctc 1740 tggtaagtcc actgctatta tgctcttgca caaaagactt ggtcatccta atattcgtgt 1800 cttacaggcg ctcactaagg accaagccct ccacggactc gatgccaaca ccggagttcc 1860 taaagacaat ttcttttgct ctgcatgtac ttacgcgaag tcacaccgcg ctgcatttcc 1920 ttccaataga cgtgttgaac gtgcttcaat accgttgcaa aaagttcatt ctgatatctg 1980 tgggccacta cccgtttcta gtctcagcgg ttgtcgctac tttgtcgtct tcattgatga 2040 ctttacgcga tacatgtttg cgtaccctat taaaacccgt agccaacttt actcttgcta 2100 cgaagacttc aggatgaaag ccttaaacat cttccgctct gatgtgcaca ccctagaata 2160 tccaggtcct acctcggact tggatgttca ggtccttcaa gctgataatg ccaaggagta 2220 cgagaagcta ggccgcatag tccttaaacg atacggaact catgcgcaat ttaccaacgc 2280 ttacacacca cagcaaaacg gtgtcgctga gcggcgcatg cgcacgattc tggaacgtgt 2340 acgtgccctc caacttgatg ccaaactgcc caaagcgctc tgggcagaat gtgtcagtca 2400 cgtgactaca ctacttaaca tgacaccgag tgagaacacc tacacttgca gtccctatga 2460 gctatggtac aatcgcaaac cgagtgtgca gtacctgaag gtgtttgggt gtgctgcata 2520 cgcacacatc aatgatatat acagggataa gctagatgca cgagcaaagc tctgtctata 2580 tctaggcatt cctagtcaca aaaaggggta tcgcctcatg gacgtttcga cgaaggccat 2640 cgtttacagc cgtgacgtcg tctttcagga agacagcttt ccaacccttg aggatgtcga 2700 cgacgcaccc gatccattgc ctctaccggc tcatctggtt gatactgccc cgtctggtga 2760 tagtcccacg tccaatatcc aaaccagcca atccccaagg gtcggaccaa gcagtccccc 2820 gaaggtcgga cctgatgtcc caccccttat aacacctgca gcgacgccga ctccgctgaa 2880 cgatgccact gatgctaatg accgaggcga aatcatctat tcttttgtaa cggaaacgcc 2940 ttcaacacct ccacagtccc ctgctaaacg tcctcgacac gaggaagcag tcaaccttac 3000 agagctgaag tcagaggagg atactcaaga aaacaatgaa cgtacaactc aaactcttag 3060 tctgcttgct acccggtatg tgcctgagcc taagtcctac aaagcagcca tgaaatcccc 3120 ttatgctaga caatggcgaa ttgctgcgga atctgaattt gcgtcactca tgaacaatga 3180 aacgtgggct ctgcttccac cacccaaagg ccgccgtgtt ctccaaaacc ggtgggtctt 3240 cgttgtgaag tacacaggct cgggtgaaat cgaccggttt aaggcacgcc tagttattaa 3300 aggctttcta cagcaatatg gcattgacta caacgagatc ttttctcctg ttatcaggat 3360 ggaggtccta cgcctcctcc tggtcatagc agcattacta gactacgagg ttcatcagat 3420 ggatgtgaag acagccttct taaatggctt cctctcggaa gaaatctaca tggcccagcc 3480 cgaaggtttc gctgctgctg gccaagagca ccttgtctgc aaactcctca agagccttta 3540 ccgccttaaa caagcacctc gtatttggta tcagacactg tgcgccttcc ttgagaggct 3600 cggctttcac aaattgatta aagatagctg cgtctttatg gcaacctttg atggccaagt 3660 atgctacatt gctgtctacg tggacgatct gcttatcata gcacccactg tcagcctcgt 3720 ctgccgtatt aaatcggccc tgaaacagag attttcaatg acagatttag gggaggtgaa 3780 gtacattctc ggctggtcca ttgaacggaa ccgtaaagcc cgaacaatct ttattcacca 3840 gcaaaagtac gctacaaatg tcctcgataa gttcaaacat cttatttcgt accctactgc 3900 gacgccctca gaccgcagca tcaagcttac aaaagccatg gagcctcaga cccaagaaga 3960 gagggaggct atgaaagaca tcccatacag agaagtcgta ggcagtctga tgtatctcat 4020 ggttggaact cgcccagatc tagcatgcta catgcgcgaa gtcagccaat tcttagttaa 4080 ccctggaaag gagcactgga aagctgtagt aagaggtcta aaatatctat ctggtacaac 4140 tgaccaaggt ttgctacttg gtggatcgac gtcggttgat gctagcaacc tagctgatca 4200 tctcacagcc tacacagact ccgactatgc taattgccct gacactagaa ggtcagttgg 4260 tgggtatgtc acaatgatcg gaacaagtcc ggtttcatgg ctttcgagga atcaccatac 4320 ggtagtgctc tcgacgacag aggctgagta tatcgcactg tgtcattgca tgcaagaggt 4380 aatcttcctc aaactgttac tgaaagagct tgggttcacg acaagtaaag ctactgtcat 4440 tatggaggac aaccaaagct gcatcaaaat tgctagcaac ccggaactac acggacgatc 4500 aaagcatatt gacatccgtt accattttgt tcaggaaaag gtagaacgac acgaattcag 4560 cgttgtttac tgcaacacca agtcaatggt cgcagatatt ttcaccaagt cacttgacaa 4620 gcatcagttc cggaatttaa gaagacaact aggaatgcaa tcattcaagg aattagcaaa 4680 tagatagatc aataatcact gtcaaataca tatattttca caatattagt gagtcacagg 4740 acagcgtggg gtttccccta caataggttt acccactgca tcctataggt tttaccctca 4800 acgaggtttc cttggtacac agccaccgaa tatgctaaca ataataatgt gaaaatgaat 4860 gacaaagtca aaagaagcac atgcattatc tgcttaagcg tcaagagcta ccttacgcac 4920 aaacataagg ctattaatcc actcaccata gcgtcccaag ctacgcttga ccgacccatc 4980 atgagcggtg tacttgcgac cctgcacctc caaaacgaac gcatgcccga cgcccatggt 5040 attgctggca gccacaatgt agaagccgtc ctcgagcttc aaacgcttga tgcctgggac 5100 gccacgatgt ccagagcgct gacgattaaa atccaggtct tgcatcgaga tgggtgaacc 5160 agcacgcttc agcagggcga gaaaagcctt gaaaacattc cagcggatgc cacgagaaaa 5220 cttcactcca cggcggtgcg actctgcgag aaagctctca acctcaacgt ctggcactgc 5280 tgatggctta cccagcaaac gcacagcctg ctgcagcgcc ttgaacaagc acgtgccgct 5340 ggcgttggca ccgatcagcg tcggcacagc ctttcgcgcc cagcacagga aggtgtccgg 5400 acgtctcgct agcacccacg catccaccat gagcatggca tagccaatgc cgtcctcctt 5460 gagcgacttc ttaggctccc aggtcgggtc ccagctttcc ggtcccgcat agttcagcgg 5520 cttcgtccag acgactttgt acttagtacc agtagccgtt tccttgcggt ccgagagata 5580 cgccacaggc cacgtcttgg cttgagtctg ctccttcggc ggcggcgtgg agctgacctg 5640 cacctgctgc tgacctgagc gcttgccacc acatgacatc ctgtccacct gcagggtacg 5700 cgccatggct gttctgggct aaaacaaccc cgatacaacc aaaacacaca caaaacaagt 5760 aaaggcaaaa gaacagtgta tttaaaatat actgcctctg ccctggatgc caaaagtgga 5820 aatgagcacc tgcatgcagg cgccggcgcg aggtctacag aatgcttttc aaacaccgta 5880 caggatttag tgtgcgacac gaaaaggcaa cttgtgtgct gtgaccgata tggtcacaat 5940 caatctgatg acgtccgaaa cggactctac aaactaatga ctatgaaaac taataaactt 6000 tggccaccag gcctcatttg caaacttgcc gtgtaaggcg cacttggccc gaagggccaa 6060 atggcagctc atgtctctca acgaggagag cccaaatctg gcctccgatg agctctaggc 6120 gttctacaag cgccagaaaa cgcaaaaagt tgttttcggc cacgccgttt tgtgaaattg 6180 cacgatctga ctgaacgagt ttgccaggga tgtgcaaccc aattttgacc aataatcttc 6240 atccctgatg gcgagccagg gaggc 6265 // ID Gypsy-9_ES-LTR repbase; DNA; PLN; 292 BP. XX AC CABU01008302; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_ES_; KW Gypsy-9_ES-I; Gypsy-9_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-292 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01008302; Positions 17262 17553. XX SQ Sequence 292 BP; 63 A; 86 C; 71 G; 72 T; 0 other; tgtgtgcaca tacgaagtgt aggaaaatat ggctccctcg cggtatcttg tcacaaggag 60 agtgacagga aatgcaccgt cggagatgga tatcttccga agtccctggc cacttgccga 120 aagtggaagc ggagagtctt cgactctctt ctccctctgc cgctatggcc actctctctt 180 tctaccctct tctcctcgtt tacacatcac gagaggaaat agccttcccc tggcagtggg 240 ataatactgc cacggcaccg gcatctgtct ccggcagtag ccagtgtcct ca 292 // ID Copia-42_PIT-I repbase; DNA; PLN; 4371 BP. XX AC AATU01002779; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-42_PIT_; KW Copia-42_PIT-LTR; Copia-42_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4371 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002779; Positions 43852 48222. XX CC Positions [1716-2243] - Integrase core CC 'CTTAA' target site duplication CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 1335..2870 FT /product="Copia-42_PIT-I_1p" FT /translation="MMIDEMNDVLLSDVVYAPGFSQTLISVKRLIDDGMKV FT EFTTSGCNVYGPPLMQGVVSRGVYTLKLPPRLAAVALRPNSIEDWHQRLNH FT LNYRAIAQLEKSDAVRELKIVGPTTPRKPCEICALSKIHHATAPLSATRSK FT EAQDEICHGDLAGPFRRSYNGNRYYFALKWMGHTTVYFLKHKSEAASSFRA FT YLNVVNRRFLKKKNIAIFRSDNGGEFIKAPFQHVCEDEGITIEMSEPDAHH FT QNGKIERTHRTITERARAIILQAELPHYLWEYAVRNTVFSLNRVLSKANPI FT QTPFERFWGRRPDLKHVRTFGQQCVVLIPDGKRSTAYKFRPKGQTGVFLGS FT DPQRKGYFVYVTGRGHHVVHSRSVVFLEPPTHSQKKLRSDDDPMAEVTEPV FT SDSDNMSADEEDDDGTDYSDSNPETKLAPSSTRRSMKRGGLALHPRQPRRT FT SSANLVVLRRSPRATGGVGTPRRSARIAGRALSAAGATLDEIIQAPLNLRE FT ARASQHWPKWEKSNTS" FT CDS 3426..4370 FT /product="Copia-42_PIT-I_2p" FT /translation="MQDFMDAIQHKYGVKDLGEARWFLGISLQFDHENGIT FT TLNQTKFADEVTKRFGMNNCRPRKTPMDQGKILYKRAEDEEAAGDVPYRQA FT VGALLYLARVTRPDISYAVNQVAAHAADPSRAHWIAVKNILRYVETTKSMG FT LVYRKARTETHVRVYTDADWANNEQGRRSISGAVVQVFGCAVSWQTKRQRI FT VSKSSTIAEYIAADDGVEEARWTMCLVARLIKISNAMKITAMIDNKSTIKR FT LTNGKNSDAQKTVDCKFFSIREAVENGELELTYCPTTVMLADTFTKALPTT FT RFQELRDLLGVAPNQHASSTGGD" XX SQ Sequence 4371 BP; 1255 A; 1119 C; 1124 G; 873 T; 0 other; ggtttacagc cgcaaggtgc cctagctgag caagaacacc tgaaatgcaa gacgacctcg 60 cctcacaagg tctgtttcga agccgtgcag cggatccata tgcattcaac cctggtcgag 120 gagaccaaag cgatcctctg ccaattatag cccaagcaag ccagcagcaa ggcggaccca 180 gcaacgatgc tcaacaccgc tacgatcgaa tcgtcaaagc attttcgatt gagccattcg 240 acgggtcgtc gttaaccggt gcggtcgatg caggtgcggc aatatggcta cagcgttttg 300 aagctttggt cgcaacgcac gaggacatcg cgggtgtata acttccggat aacatcaaaa 360 acgctctctt tttcaagcag ctgaaaggaa cggcaagtca atggtacatc gcaaacattg 420 tagacctccg aagaggctca tttgctgaaa ctggtcgtcg tctcaagaca gagtttggat 480 ctaagttacc aaagcaggag gtccttatca aggtcgcgag tgaacgcaaa cgatactcag 540 atacctacca cgagttttcc ctgcgtctaa ggtcaatggc ggcatcaact accgcagatg 600 gtttggaaac ggtcgagtca aataactttg cgctgagcgc cttcatcttg aacgcatggc 660 ccagacatgc cgactcacta cgactcgtca ttaacgaaga caatcctgaa cctctcacgg 720 agatgaacca cgctattgct aagctttgta ccatctcgag gagtcatggg gcagcagcca 780 tccggcccat ttctggtgca ggaacaagca ccacgggatg gaatcaaaac cgaaggcagc 840 accaccaaga caatcggggg atgcaacgca aaagaagcga gcctggtgac gttatcaaga 900 aggagcccag actacgggaa cagaaacgag tgcgtcgcga gcctcgcgat tattccaaag 960 cacgctgtga tgaatgcggg gaacttggcc acacgaccgg ttaccacaac aagcacgtgt 1020 cccaacatcg agggttggcg cacgcagcaa agttaactag aaatggagat gaagatgaac 1080 ggaaagacga caagggcgac taccgccagc acgaagacca ggacatatct gaatgaagac 1140 cgcgggaccc gcgtccagaa caccgagacc cacatcttgg ccccggtatt caacgcggtg 1200 ccccgctcat tgactcagca tcgacgtatc atatcactgg aaacctgtca atactttttg 1260 acttagagga gtgtgaagta catgcagtgg agattgccga tggtcgatta gtcactggaa 1320 accaaaaggg aaaaatgatg attgacgaga tgaacgatgt cctcctgagc gatgtcgtgt 1380 acgcccctgg gtttagccag acgctgatat ccgtgaagcg actaatagat gatggtatga 1440 aagtggaatt taccacatcc gggtgcaatg tgtatggccc acctctaatg cagggagtgg 1500 tgagccgtgg agtatacact ctaaagcttc caccgcgact agcagccgtc gcgctgcgtc 1560 caaactctat tgaggattgg catcaacgat taaaccacct gaactaccgc gctatagctc 1620 aactggaaaa atctgatgct gtgagagaac tgaagatcgt cggcccgact accccacgga 1680 aaccatgtga aatctgtgct ctgagcaaaa ttcaccacgc gacagcgcct ttatcagcaa 1740 cccgatcgaa ggaggcacag gatgaaattt gtcatggtga tctcgctggg ccctttaggc 1800 gaagttacaa cgggaaccgc tactattttg cgctgaaatg gatgggacac acaacggttt 1860 atttcctaaa gcacaaaagc gaggccgcgt catcctttcg agcatacttg aatgtggtga 1920 atcgcaggtt cttgaaaaag aagaacattg cgattttccg gtccgacaac ggaggggaat 1980 ttattaaagc tccttttcag cacgtatgtg aagacgaagg catcacgatc gaaatgtcag 2040 aacctgacgc tcatcaccaa aacggaaaga ttgaaaggac ccatcgcacg atcacagagc 2100 gtgccagggc tatcatactg caagcagagt tacctcacta tctgtgggaa tacgccgtac 2160 gcaacacggt tttctcactg aatcgagtac tgagcaaagc taatccgatt caaacacctt 2220 ttgagagatt ttggggacgc cgaccggacc tgaagcacgt gcgaacgttt ggacaacaat 2280 gtgtcgttct cattccggac gggaagcgtt ccactgcgta caagttcaga ccaaaaggcc 2340 aaaccggtgt ttttctgggt agtgatcctc agcggaaagg ttacttcgtc tacgtaactg 2400 gtcgtggtca tcacgtcgtt cacagccgaa gtgttgtttt cctcgagccg ccgacccatt 2460 cacaaaagaa attgagaagt gacgatgacc caatggcaga agttaccgag cccgtaagtg 2520 acagtgacaa catgagtgca gatgaagagg acgacgatgg cactgattac agtgacagca 2580 atccagaaac taaacttgct ccgagtagca ccaggagatc catgaaacga ggcgggctag 2640 cactgcaccc acgccagcca cgtcggacct cgagcgcaaa tcttgtcgtc cttcgcagat 2700 caccccgcgc cactggaggc gtgggtactc cccgtcgatc cgcgcgcata gcgggacgtg 2760 cattgagcgc tgcaggagcg acactcgatg agattattca ggcaccattg aacctgagag 2820 aagcacgtgc atctcagcac tggcccaaat gggaaaaaag caatacaagc tgagattgaa 2880 gcattgcgtg aaaatgacac atttgaactc gttgatcctc ctcctggagt gaacataatt 2940 ggctcaatga tcgccttccg agtcaaagaa aaagaagatg gctcgataga gcgcctgaaa 3000 gcacggattt gcgcgcaggg gttcacacag gagtttataa aaatctactt tgagacgtac 3060 gcgcccgtgg cccgattgaa ctcgatccgc atcttcttag cgatagccac ccaacttcgg 3120 ttgcgtgtgc ggcagggcga tgtacccaca gcttatgtga aggcgatgct aaaggaagtc 3180 atacatgtac gacagccgcg cggattcgag gagggagtcg cacaaaggtc tggcggctca 3240 agaaggcttt atacggctta aaacaagccg ggagagaatg gaatgcagaa ttaaacgctt 3300 tcctcttgca gtacggcctg gctccaacca aagaagaccg atgcgtgtac acccacccgg 3360 aacatgttct cgtagtacta atctatgttg acgacattct cgtaggctat cgacgcgaag 3420 atgtgatgca agacttcatg gacgccatac aacacaagta cggggtcaaa gaccttggtg 3480 aagcaaggtg gttccttgga atctcactac aattcgacca cgaaaacggg atcacgacac 3540 tcaaccagac aaagttcgcg gacgaagtca cgaagcgctt tgggatgaac aattgccggc 3600 ctcgaaagac tccgatggac caaggaaaaa ttctgtacaa gcgggccgaa gacgaggagg 3660 ccgcagggga cgttccatac agacaagctg ttggcgccct cctatatctc gcccgcgtaa 3720 cccgaccaga catatcctac gcagtcaatc aggttgccgc acatgctgct gacccttcca 3780 gagcacattg gatcgcagta aagaacatac ttcgctacgt tgaaaccact aagtcaatgg 3840 gactagtcta tcgcaaggcg agaacagaaa cccatgtgcg cgtctacaca gatgctgact 3900 gggccaacaa tgaacaaggc cggcgatcaa tatccggggc tgttgttcaa gtgtttggct 3960 gcgctgtttc ctggcagacc aaacggcagc gcatcgtgtc aaaatcatcg acaattgccg 4020 aatacattgc cgcagatgat ggcgtggagg aagcacgatg gaccatgtgt ctagtagcgc 4080 gactcataaa gatcagcaac gccatgaaaa ttactgctat gatcgacaac aaatcaacca 4140 tcaaacgcct cacgaatgga aagaactcgg atgcacagaa gactgtggac tgcaagttct 4200 tctcaattcg agaagctgta gaaaacgggg aactcgaact aacatactgc ccaacgacgg 4260 tcatgctggc agacacattc actaaagcac taccaacaac aaggtttcag gaactaaggg 4320 acttactagg cgtcgcaccc aatcagcacg cgtccagcac tggaggggac g 4371 // ID DNA-5N_PPa repbase; DNA; PLN; 468 BP. XX AC . XX DT 31-DEC-2009 (Rel. 15.07, Created) DT 31-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-5N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-468 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1016-1016 (2010). XX DR [1] (Consensus) XX CC TIR is 92-bp long, TSD is unlcear. XX SQ Sequence 468 BP; 144 A; 79 C; 98 G; 147 T; 0 other; ggagaatatt aaattgatcc acctaaatct taaatcgatc caccttactt ccatgattca 60 atctttgtga ctacttctct aatttgggaa tagaaaaacc tataaactca tttatttgat 120 tctaccttga tctcttggca aatttgaagg tgtaacaacc atgttttatg gcacaagaga 180 gggagtggag ggaaggagta gatggtattg ggtgaggatg tgcccccaca gtgtgtgtgt 240 ctggaattgg gtacccaaga gtgcttcaaa attagagcca acacaaggca atgcaagaga 300 gaccccaaat cccttctctt ccaaggagga tcttggattc atctctgtta ttgtctattg 360 agttcacaag tttttttatt cccaaattag aaaagtagtc acaaagattg aatcatggaa 420 gtaaggtgga ttgatttaag atttaggtgg attaatttaa tattctcc 468 // ID Gypsy-27_PIT-I repbase; DNA; PLN; 5228 BP. XX AC AATU01000368; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PIT_; KW Gypsy-27_PIT-LTR; Gypsy-27_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5228 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000368; Positions 103367 98140. XX CC Positions [4005-4490] - Integrase core CC 'AGATC' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 30..5153 FT /product="Gypsy-27_PIT-I_1p" FT /translation="MEDPDDAMVPVPTGGMPIAVYPPLPPLTEHDLRLTQE FT TTTRTAVIQGSETRRQVEALAQHSAAAHQWNAEQIGQVQQQQDRLAAQTSE FT YLQAQSDQQMALAEQQVEMRRQMDEHRKYLEEQFKILKAAEEAVGLQGQRL FT ETLAEAVQPHLQTRWGAFAQGAVPPGDIRPSEEPAVTVAAGSKLPVPPIYR FT GSSKKEKRDFMDSYAIYTRRIRALNQGTQAKFFVMPLSACIEQGTMVRICG FT FELFKDEKNVTEAEWRDFFLSARIPDNTAYKTLDKEVKFLCMDTELQDAES FT RLSRLMAEFYDIIDRLNMEDVVQTEPKKVVGYLVEALRPPPFKSAVKDQLS FT RQCHKPTKANLAMFLTWLRPELESYMKFEAHISAQTQVKGGAKPAQLQNQP FT KRGYGVSIGDPKGGSRAGGGSDRLQSKAANKPKMKLSGDRPPKKCFKCGDP FT THGVFQCRDVASPAEAKEIYEANTGKMVFKPVLAVAQPSTSISKLTAAIPC FT WVMDAIETEITPDSAAEVSMVTTTLLKQLAAQGSWIKQQDVTGEVAVTGVG FT EKPVPVKSKVQLDLKFSTPGGSLVLRNVICWVTENKLPPGVGNLLLSRWIM FT ERLGYSPEKLLAAAQRVSTEWDMSDVDDRPTSGIASVLAYSENSQTATVTE FT EERAMEDDEDRACFPEFTSDIDAERQEIRALLFEKVEEARQQGATAEFCDE FT LQAILMEFIDVFRIIIGRDPPVDMPPMEVTLKPGSILVRCKARRYSPLHRE FT FLKKHINALVSAGLCYRNPRSRWCSPPHVVSKPEAGSYRMTVDVRGPNSCV FT ESVVWPMPILEAAFEQLRGSSRYFSLDFFKGFWQFAMALTCQEIYSILTEE FT GVITPTRVLMGGTNSVAYVQFTVQQMFDEVFNDGLMIWIDDLLGYDDSDEG FT LLALLKKVLSICATKGLKLNPKKCKFYLRKALWCGRVVSGEGVRHDPARIA FT ALANISPPTTGQELQQFICALNWMRASLPAFNKLIDPLVKMMEKVYERAGG FT RKKNQVRHVLLRAVGWGESEDACLDRCKAALQNALQLAHPDPEKRLTVYTD FT ASEEHWGAAITQIPRDQTTRPLSEQEHQPLMMLSGSFSGAAKRWAIVEKEA FT YAIVETCRRADYLLHRHDGFALFTDHRNLRFIFDPHSVSNSVPKYTADKLH FT RWSLLLMSYKYEIHDIAGEDNAWADLLSRWGSTFKTVCAIRQVPLPISPQL FT DAQFVWPTIGDIVVVQQAASPPEEFTQSTDDLLWRDEHSRIWIPDEATDMQ FT MRVCVVGHFGIAGHRGTKVTLKQISDKFVWTNLAKDVEFFVGRCLHCASTL FT GRPPQPRPLGEAMHAEKPNELIHWDYLFMGKSDSELEYVLVIKDDASKFVW FT LMPSKAADADTTFAALLDWFASFGVCRTWVSDQGTHFKNTVIEAFQHALGA FT HHHFTTARCPWANGTVEVVMRETLRCCRALLSEWRLQPREWPRVIKIVQLV FT LNNTPSPALGGVAPVTAMTGLREMGPSDHIAVPGSVEMATLQEVQDAQREH FT VVRLQHALEQMHKRSAKVNAAVRAAGRKGRDKKQGTAMAQFDVGDYVLYAD FT VWQHTRSKLSVNWCGPAQVVSTVSNWIFEIQNLVTGQRKEAHASRLKFYAD FT DSLNVSEDLLLHIAHNSEGHVVDKLLEARYNRQDKRHELKVHWRGLDTIED FT SWEPAATLMQDVPAAVKAFVQSHGMLPAVKELRKVLRIN" XX SQ Sequence 5228 BP; 1429 A; 1166 C; 1431 G; 1202 T; 0 other; aagaattctt tagctggata gcaaccagca tggaagaccc tgacgacgcg atggtgccag 60 tccccaccgg cgggatgccc attgccgtct acccgccact gccaccgctc acggagcacg 120 acctgcgact gacacaggaa acgacaacac gaacggcagt aattcaaggg agtgagacga 180 ggcgtcaagt agaagccctg gcccagcaca gtgctgcagc tcaccaatgg aatgctgagc 240 agattggcca ggttcaacaa cagcaagatc gacttgctgc acaaacttca gagtatctac 300 aggcgcaaag tgatcagcag atggctttgg ctgagcaaca ggtagaaatg cgccgtcaaa 360 tggacgaaca tcgtaaatat ctggaggaac agtttaagat tttgaaggct gcggaagagg 420 cggttggcct acaaggacaa agacttgaga cgttagcaga ggctgttcaa cctcacttgc 480 agacgagatg gggtgcattc gctcaaggag cagtaccacc aggtgacata cgaccttcag 540 aggagcccgc tgtcactgta gcagcaggat cgaagctgcc tgtacctcct atatacagag 600 gtagctctaa aaaagaaaag agagacttta tggatagtta cgcgatctac acaagacgaa 660 ttagggcgct gaatcaaggg actcaagcca aattcttcgt gatgccgctg agcgcgtgca 720 tcgagcaagg cacaatggtg cggatttgtg gattcgaact cttcaaggat gaaaagaatg 780 ttacagaagc agaatggaga gatttttttt tatctgctcg cattccagac aatactgcgt 840 ataaaacgct ggacaaagaa gtgaagtttc tctgcatgga cacagagttg caggacgcag 900 aatcccgatt atctcgactc atggcagagt tttatgacat tattgatcga ctcaatatgg 960 aagatgtggt gcagacagaa ccaaagaagg ttgtggggta tctagtggag gcattacgtc 1020 caccgccttt taagtctgct gtaaaggatc agttaagtag acagtgccac aaaccaacta 1080 aagcaaacct cgccatgttc ttaacttggc tccgaccgga attagagagc tatatgaagt 1140 ttgaggctca tatttcggcc cagacgcagg tgaaaggagg tgccaagcca gcccagctgc 1200 agaaccagcc taagcgagga tatggagtct ccattggaga ccctaaagga ggaagtagag 1260 ccggcggtgg ttctgatcgg ctgcagagca aggctgccaa taaaccgaag atgaaactat 1320 ctggtgatcg accaccgaaa aagtgcttta agtgtgggga cccgacccac ggcgtgttcc 1380 agtgccgtga tgtagcaagt ccagcagaag caaaggagat ttacgaagca aatacaggaa 1440 agatggtgtt caagcctgtg ttagctgtgg ctcagccttc taccagtatc tcaaagctga 1500 cggctgctat tccatgttgg gttatggacg caatagaaac tgaaattacc ccagatagtg 1560 cagcggaggt ctctatggtg actacaacgc tgttgaagca actagcagca cagggttcgt 1620 ggataaaaca gcaagatgtg acgggtgaag ttgcagtgac tggagttggc gaaaaaccag 1680 tgcctgttaa gagcaaagtg caacttgatc taaagttttc gacccctgga ggatcgttag 1740 tactgcgtaa tgtgatctgt tgggtaacag aaaacaaatt accaccagga gttggtaatc 1800 tactattgtc tcgatggatt atggagcgat taggatatag tccggaaaaa ctactcgctg 1860 cagcgcaacg agtaagcact gagtgggata tgagcgatgt agatgacaga ccaactagtg 1920 gaatagctag tgttcttgca tactcagaaa acagtcagac cgctactgtt actgaagaag 1980 aacgtgcaat ggaggatgat gaagatcgag cttgttttcc tgaattcacg agtgatattg 2040 atgcagaacg acaagaaatt cgggctcttc tctttgaaaa agtcgaggaa gctcgacaac 2100 aaggtgcgac agctgaattc tgcgacgagc tgcaagctat actcatggag ttcatcgatg 2160 tttttcgaat tataattggg cgtgaccctc cggtggatat gccgccaatg gaggtaactt 2220 taaaacctgg atcgatttta gtgaggtgta aagcgaggcg ttactcgcca ttacaccgtg 2280 aatttctgaa gaagcacatt aatgccttag tcagcgccgg tttgtgctat cggaaccccc 2340 gcagcaggtg gtgttcacct ccccacgttg ttagcaaacc cgaagctgga agctatcgca 2400 tgaccgtaga tgttcgtggt ccaaatagct gtgtggagtc agttgtgtgg cccatgccga 2460 tactggaggc agctttcgag cagttacgtg gctcatcgcg atatttctcg cttgatttct 2520 tcaaaggatt ttggcagttt gcgatggcgt tgacgtgcca agagatttac tctatcttaa 2580 cggaagaagg ggtaataact ccaaccagag tgctaatggg agggactaac agcgtagcct 2640 acgtgcagtt tacagttcag caaatgtttg acgaagtctt taacgatggt ttaatgattt 2700 ggattgacga cttgttggga tatgacgaca gtgatgaggg attgcttgca ttactaaaga 2760 aagtgctgag tatttgtgct actaaaggac tcaagttaaa ccccaagaaa tgcaaatttt 2820 acctgcgcaa agcactgtgg tgcggtcggg ttgtttcggg cgagggcgtt cgccacgacc 2880 cagcgcgaat cgccgccctg gccaacattt cgccaccaac aacgggacaa gagctccagc 2940 aattcatttg tgcgctaaat tggatgcggg cttcgcttcc agcatttaat aagctgattg 3000 atccattagt gaagatgatg gagaaagtat acgagagggc tggtggccgc aagaagaacc 3060 aagtaagaca tgtgttgctt cgtgctgttg gctggggtga gagtgaagat gcatgcttag 3120 accgttgcaa ggcggcactg caaaatgcac ttcaattagc acatcctgac cctgaaaagc 3180 gactcacggt gtacacagat gctagtgagg aacactgggg tgcggcaatt acacaaattc 3240 ctcgagatca gacaactcga ccattaagtg agcaggaaca tcagccacta atgatgttga 3300 gtggatcatt ttctggagca gccaagcgtt gggctatcgt cgaaaaggaa gcttatgcca 3360 tcgttgaaac gtgtcgacga gccgactatc ttctccaccg acatgatggc tttgcgctgt 3420 tcactgatca tagaaatttg cgcttcatat ttgacccgca tagtgtttcg aactctgttc 3480 ccaagtacac cgctgacaag ttgcatcggt ggtcactgtt gttaatgagc tacaagtacg 3540 agatccacga tattgcgggt gaggataacg catgggcaga cttactttca agatggggat 3600 cgacatttaa gactgtgtgt gctatacggc aagtcccgtt gcctatctcc ccgcaactcg 3660 atgcccaatt cgtgtggcct accattgggg acatcgtggt agtgcagcaa gctgcgtcac 3720 caccggaaga attcacacag tcgactgatg acttgttgtg gcgagatgaa cacagtcgaa 3780 tctggattcc cgatgaagct acagatatgc aaatgcgtgt atgtgtggtt ggacatttcg 3840 gtatcgcagg acaccgaggc accaaggtga cattgaaaca aatcagtgac aagtttgtgt 3900 ggacaaattt ggcgaaagat gtcgagtttt ttgttggacg ctgtttgcac tgtgcaagta 3960 cgctcggccg cccaccacag cctcgaccgc tgggtgaagc aatgcacgcc gagaagccga 4020 acgagttaat ccattgggat tatttgttca tgggaaaaag tgacagtgaa ctggaatacg 4080 tgttggtgat taaagatgat gcgtcgaagt ttgtgtggct catgcccagc aaggcggctg 4140 acgcggacac tacgtttgca gctctactgg actggtttgc gtcatttgga gtgtgtcgta 4200 cctgggtcag tgaccagggc acacacttta aaaacacagt catcgaagca tttcaacatg 4260 cacttggggc acaccaccac ttcactactg ccaggtgccc ttgggctaac ggtacagttg 4320 aggtggtgat gcgggagacg ctacggtgct gccgcgcatt gttgtcagag tggcgactac 4380 agccccgtga atggccacga gtgattaaga ttgttcagtt agtgctgaac aacacgccat 4440 caccggcact gggaggtgta gccccggtga ccgcaatgac tgggctccgc gaaatgggtc 4500 caagtgacca tattgctgtg ccaggatcag ttgaaatggc tacactgcag gaggtacaag 4560 acgcccagcg tgaacatgtc gtacgactgc aacacgcatt agaacagatg cacaaacgca 4620 gcgcgaaggt gaacgcagcc gttcgtgctg ctggacgtaa gggtcgcgac aaaaagcaag 4680 gtactgctat ggcccagttt gacgtgggag actacgtttt gtacgccgat gtgtggcaac 4740 acacgcgcag taagttgagc gtgaactggt gtggaccggc acaggtggtt tccaccgtgt 4800 ccaattggat ttttgaaatt caaaaccttg ttacaggcca gcgcaaggag gcacacgcta 4860 gccgcctaaa gttttacgct gatgactcgc tcaacgtcag cgaggaccta ctgctacaca 4920 tagcacataa cagtgaaggg cacgtcgtag acaagttact tgaggcgcgt tacaaccgcc 4980 aggacaaacg tcacgagctt aaagttcact ggcgtggact tgatacgatc gaagattcgt 5040 gggagccagc tgccacactg atgcaggatg tgcctgcagc ggttaaagct ttcgttcaat 5100 ctcacggaat gcttccagcg gttaaggaac tcagaaaggt gctacggatc aactaggccg 5160 cacttgatac gatccagcaa acctggcgcc tacagcatct ttacatttga agcttttgga 5220 gggggaag 5228 // ID PYRET_LTR repbase; DNA; PLN; 475 BP. XX AC AB062507; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Magnaporthe grisea Ty3/gypsy-type retrotransposon PYRET_LTR, long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; PYRET_LTR; Ty3/GYPSY superfamily; KW gag-pol pseudogene; retrotransposon. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-475 RA Nakayashiki H., Matsuo H., Chuma I., Ikeda K., Betsuyaku S., RA Kusaba M., Tosa Y. and Mayama S.; RT "Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea RT contains an extra domain between the nucleocapsid and protease RT domains."; RL Nucleic Acids Res 29(20), 4106-4113 (2001). XX DR Genbank; AB062507; Positions 1 475. XX SQ Sequence 475 BP; 157 A; 115 C; 90 G; 113 T; 0 other; tgttacgacc agacagttgg gccggtacca gggaggccag gtggggtcgt gcccctcctg 60 acgacactcg cccaaaaaaa gtcaccgacc ggcaaaacag ggattacgta aggacaaaac 120 cacgtgacag cacgtgactg ccaagacaat tgatctcaaa cggacaaggg atgatctcaa 180 agatcacaac ctgatctcca gagaccctgg ggagtcttta agatcagaga cctttcagga 240 gagatcacat tcggaatata atttatataa ggcacgctca ttaccatata aataaattcg 300 attttaggat tgtttagcag caattaaact ttaattaacc tcaatattta tttgagaacg 360 attataattt cacccccaat tattaaaaac cccagttacc caattagacg ctcaattgct 420 tcaacccact gtactttacc ctaagaacag gttacccgat accttgatcg taaca 475 // ID Copia3-LTR_VC repbase; DNA; PLN; 368 BP. XX AC scaffold_156; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia3-VC; KW Copia3-I_VC; Copia3-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-368 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 127-127 (2008). XX DR Genome; scaffold_156; Positions 32258 32625. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 368 BP; 69 A; 87 C; 106 G; 106 T; 0 other; tgttgatgcg aagggttgcc gtgtcgccct gtggcctgtt tgggtaactt gtcagactat 60 cgtgagtgac agctgaggcc ggtctgaggt cgtatgttag actgagtgac agctttggac 120 ctgtctcggg aggcccgtca aaacggctgt taagttctag cgtaccggta gctctcgtcc 180 tttgggatag gctttccaag cctttataag tctctgctgt ttatcggtaa cagtacctca 240 gattcacacg tttacgccta ggcaaagggg ctttcggtgg taggtcgcgg atctcccgaa 300 tacgtgtaac ggctaatgtc tccttagtcg tgtctgctag gtccctgtga gatagcgtct 360 caccaaca 368 // ID Gypsy-7_PSo-LTR repbase; DNA; PLN; 354 BP. XX AC AAQY01000344; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PSo_; KW Gypsy-7_PSo-I; Gypsy-7_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-354 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000344; Positions 2601 2954. XX SQ Sequence 354 BP; 94 A; 72 C; 95 G; 93 T; 0 other; tgtaacgggg ttacacgata gttacccgaa gggttatgaa gtgggtacac actgtctaac 60 ctaaaccagt aggagaatca gtacatggct ttagagccac tgattatgca tatgactagg 120 gttcactgtg ctagatagtg aaccggatac atttattaca ccgtaggcgg cttggccgca 180 ataaagggaa atacattcag tttgagattt acactgaaga gtctagggtt gactcttgga 240 gtccgtaggg tgtacggact cgtacgttct ggtattagaa cgggcgatct taagttgaga 300 ctctgcgagt ctgttaagct tcctctgacg caaagctacg gcagccccgc tgca 354 // ID TE-2_PPa repbase; DNA; PLN; 319 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous transposon - consensus. XX KW Transposable Element; Nonautonomous; TE-2_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-319 RA Bao W. and Jurka J.; RT "Non-autonomous transposons from moss."; RL Repbase Reports 10(7), 1045-1045 (2010). XX DR [1] (Consensus) XX CC TIR and TSD are not clear. XX SQ Sequence 319 BP; 133 A; 53 C; 46 G; 87 T; 0 other; agaacattgt ctgtctgtga tggcaaagct aatctatata gtaatagatt ataacataac 60 gggtcatcct agatactgaa acagttccta caaaaaaaaa caaaaacaaa aaaaatataa 120 tcaaacaacc atctctacca taaaattaga acaaaataac atgtttgttt cccttacacc 180 gtatattgaa caaaagatca gtttgataga ttcaaaatta ccaactcaat gtaatgattt 240 ttgttgattt taaataaaac aaagaaaaca gaattttctt tgaggacagc tgggtgtacc 300 gggggtacac aggccatac 319 // ID Copia-21_PIT-LTR repbase; DNA; PLN; 255 BP. XX AC AATU01000203; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-21_PIT_; KW Copia-21_PIT-I; Copia-21_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000203; Positions 2478 2732. XX SQ Sequence 255 BP; 64 A; 63 C; 64 G; 64 T; 0 other; tgttgaattg gcagtgcgac caagctgcgg gtgaacgctt gcgatagcac agaacacaga 60 ttctcaggga tagttggtgt gtaggatgat agactatatg gttggtagat ggagagcttc 120 tctggacaac ccaagtccgg acaagaaagc tctcctcact tttgcttttg ctaagtacct 180 aagaggcaac aacttcaggg agaacagcca cctcccctcg cctgcgtctt ccacttcaag 240 tgccttctca gttca 255 // ID Copia-10_ES-LTR repbase; DNA; PLN; 220 BP. XX AC CABU01005163; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_ES_; KW Copia-10_ES-I; Copia-10_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-220 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005163; Positions 26331 26112. XX SQ Sequence 220 BP; 54 A; 53 C; 53 G; 60 T; 0 other; tgtcaggagt attgtagtgc aagaactgac tctattctac tgcatgggtt ttgtgcagta 60 ttgtgaaggc gtgacttcaa gtctgtaacc gtcaggtgaa ggcaggcttg gtcgctttgt 120 atgttaatga atcactctgt gtttacctac ccaaactgcg ccactactgc caactacaca 180 gcagcacacg gcagcccaga caactgctga actgctgtca 220 // ID LTRKT2 repbase; DNA; PLN; 417 BP. XX AC AJ439557; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Kluyveromyces thermotolerans retrotransposon LTRKT2, long DE terminal repeat. XX KW LTR Retrotransposon; Transposable Element; LTRKT2; KW Long terminal repeat; retrotransposon. XX OS Lachancea thermotolerans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Lachancea. XX RN [1] RP 1-417 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439557; Positions 1 417. XX SQ Sequence 417 BP; 107 A; 94 C; 87 G; 127 T; 2 other; tattgaggcg agtctgggtc attggtcgaa agggtcttaa attccttggc tagggtttcc 60 ataatgatct aggtaaacta cttcgcggat gatggtacta aatatctccc cgctatctcc 120 tttgttcaag aaatacgtcg tccataccaa agaaatgatc cggatttata caaaatttct 180 gggacgtggc tgagtcttaa tcataaggtg ataattgtac tggtggcacc actccttgcc 240 ttctccaagc cactgtggtc tgatctggac tatgaacggt caatgtgggc cttmtacgtg 300 acttagctgg gtatccgtcg tatttacgat atgtmcatgt gccatatcat ttcataccaa 360 tttgtcatta tgcaacttgg cactatcaca caccaacgaa ccgctcacaa tctgaca 417 // ID Copia-33_PIT-LTR repbase; DNA; PLN; 261 BP. XX AC AATU01002124; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-33_PIT_; KW Copia-33_PIT-I; Copia-33_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-261 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002124; Positions 121156 121416. XX SQ Sequence 261 BP; 69 A; 71 C; 59 G; 62 T; 0 other; tgttgagagg cacgtcaaca tgtagtcatc taccgctgat tacgacgtac aggcaaggca 60 cacgcaccac acagaagact attggtcggt ggcaccatgc tcgttcaggt ggctctgcga 120 ttggtggcat gcagcactct tcagcgtgct gcccaagact ttaccctttt gctacaggct 180 agatgtagat cagctcgaac taggaccaca agtagctagc gcacgattaa tctcactctt 240 taaatttcca acaactcaac a 261 // ID Gypsy7-I_VC repbase; DNA; PLN; 6364 BP. XX AC scaffold_29; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7-VC; KW Gypsy7-LTR_VC; Gypsy7-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6364 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 116-116 (2008). XX DR Genome; scaffold_29; Positions 972421 966058. XX CC 'CTACA' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 1524..4280 FT /product="Gypsy7-I_VC_2p" FT /translation="MRIDPTIFATIESRIGRTITFDACASDDGNTAVCKSF FT GSESRQFLSLDCSGHTLWLNPPIRKFYAYLRHYRRCKEHDPSMAACTLVPE FT TPGKFRTFLDGMTLIQTFPKGTRLYTASYPGCPEPPPLTEPLQLWYDSPSP FT EQRLNPSCCLTEKDAYLDLFSGKLSETSVRILPDTGATHCFIAKALADRLG FT LALEPSPCAPVRLADASYASVAGECKTRLRIGRFRAEVRFLVLPTLTTSAD FT VVLGQNFLRRYRAELRPAEGSLKLRRPTGLSVTLRSENAPSPVTVSDVPSV FT TLLEKRPETIQIVSPKRAFRDLNEAGCRSLLVVVKQTASLLSDTPTLNAVD FT LPPHIAENESLVEIINEFPKVFAPITELPPDRGVNHAIPLEPNAQPTFRPQ FT WRLSPLEREEVEKQVKDLLAKGFIRPSTSPFGAPILFVTKKTGELRMCIDY FT RALNKITIKNRYPLPRIDDTLDRLAGASIFTALDLASGYHQLRITPEDVPK FT TAFTTHLGHFEWLVLPFGLSNAPATFQNLMNRIFAPYLNRFVTVYLDDILI FT FSKTPEEHARHLRVVLKVLEENQLHVKLSKCDFWKNEVQYLGHVVNAEGIR FT MDPKKVEIIRNWPLPKDISELRSFVGLANYFRRFIAGFSSLAAPLTDLFSA FT KRLPDEWPEQAIRAFETLKARLLNDVLLNYPDFTKPFEVISDASLNGTGAV FT LLQNDRPVAFTSKKFSPAERNYSTGEQELLGVINALREWRCYLQSSIPFNL FT VTDHHPLIFLKTQSTVSRRQARWLEFLAQFNFEWIYRPGRLNVVADTLSRH FT PSLASVVVFNAVTTRRSQGLTLDPLIQRIADATKRDAHFQNPDHTHFFLTN FT PLGFFQIERGECEYRIVVPNDPALKREIIERSHTNILSGHPGRDRTIDLVE FT RNFWWPTLKADVAGG" FT CDS 4644..5585 FT /product="Gypsy7-I_VC_3p" FT /translation="MTFKEFTEKLCKRTAYKCLMCVLVSIPRHGVGKLAHL FT VTVLWHYYYYYRRQALRATTALPSQVNVADFVACCDLCQRNKASSGKPLGL FT SRPLPIPERPWSSVSMDFVLGLPSTRKGYNSLVVFVDRLTKMVHVRPCKKE FT IDAEETADLFFDTVVRLHGLPDAIVSDRDNKFTGAFWTSLMKRLEVKQAMS FT TAFHPQTDGQTERVNRVLGDMLRNYCDQEPSRWETYLGPAEFAINNSKNRS FT TGVSPFFLNYGYHPKTPVQLELGDAVPVAKGYVDTYAKRLAAAKSALMAAQ FT DRMTKQENKGRRDVSFTEGQQV" XX SQ Sequence 6364 BP; 1615 A; 1592 C; 1546 G; 1611 T; 0 other; ttttggagtc acagccttcg ctccaggctg ttattttctt acaataggcc ctataattag 60 aaatcctgaa ttacagaaga aggatttaga agtcatccag tggcaactct ttgtcgcgag 120 cttagactcc gacttcccgt tcgaccttta cggtcgtatg gaatttaacc ctaacaaatt 180 acagcgacta cgcgaccagt tagctttggc gctcgctgcc ttcaccttga acggtcgtgg 240 caaagaagtt agaggacctc aaacttaccg ttcaaggtaa aggcagagag aaatcccgag 300 gtaattgaga accctctgaa ccctcctctg aacggtaact cgcgattgaa agcattgaag 360 ctttccgaac cgcaatggaa gcccaaccat aaccccgaaa atttcatccg ttattttcgg 420 ctctactacg agaactgccg agaggcgccc cctccgttcg tggccatgtt ggccgctctc 480 cagaaccacc cggaggcctc agattggata aaccaatatg gtgaatccgc ggattctcgg 540 ccagatcgtc tgacgctgga cgcgataatc gaagccttaa acgagcgctt cgtagattcg 600 gtacgttcta gaccattaga aaaatcgcag atgcttttgg acggcaagat tagaatggac 660 gcccagaaag gcgtacctga atatgccgct agatttcgtg aagcgattac aattgctaga 720 atgaccgaca ctccgaccat tttgaccctt ttccggcgcg gactgatttt gcctttggtc 780 gctccttgcc gagtgaattt caaaggtgca gaatttgaga acttgaatga attaatagaa 840 catgcgattg gagaagaaaa gaaattgaag gaaacttcaa agcgcccttc acttaattat 900 tcttatgccg atctacccct cgcccgaaac agactcagaa acgacctcat ggtgttaaca 960 cctgggttga agtcgcaaag aaacctcgac cccaacatcg agttaacgac ggtgccggcc 1020 cgtctacggt tggaccgccc cagaaccatg tcaacgacgg ggctgggcct tcgaacgcta 1080 gaccgccgtc gcagccgtcg cgaccggtgc cctcgacacg gacaccgccg ttaccttcga 1140 atgccgcaga gaactctact aagaagcgga aaaatgacct cactgcaacc gagtgggcca 1200 tttataagct gtatggcctc tgcactaatt gtggtcgcca gggacacctc gctaagacgt 1260 gcgggaagtg acgtgctgcc cagctgccta gtggccagca ggctgggact tgccgagtag 1320 aagacgatga tttgagactc gaaccgcgca tagacccttt agagactttc acgcaaccga 1380 aacctgtctt gacatcggtg tgtgtgcaga ttgaacgcga gttgagacct ttagaacatt 1440 cgctggcatt atgtgcgcat gatcatcctc gtgatagact accttcgtcg attacgtgaa 1500 gtgtatgtga tgcgtgtcca cgaatgcgaa ttgatccgac aatctttgcg acaatagaat 1560 cccgtattgg gaggacgatt acgtttgacg cctgtgcaag tgacgacggc aatactgccg 1620 tatgtaaatc ttttggatca gaatcgcgtc aatttctgtc gcttgattgc tccggccaca 1680 ccttatggct taatccgcca attagaaagt tttacgctta tttgagacac tatcgacgtt 1740 gcaaagaaca tgatcctagt atggcagctt gtactttagt gcctgaaacg ccagggaagt 1800 ttcgcacttt cctagacggc atgacgttga ttcaaacttt tccgaaaggc actcgactgt 1860 acacagcttc ctacccagga tgtccagaac ctcctccact gacagaaccc ttgcaactat 1920 ggtatgattc cccttctcca gaacagcgat tgaatcctag ttgctgcttg acagagaaag 1980 atgcgtattt agacctgttc tcagggaaac tcagtgagac atcagtacgc attcttcccg 2040 atacaggcgc aacgcactgt ttcatcgcta aggctttggc agaccgtctt ggattagcct 2100 tagaaccttc gccatgcgcg ccggtacgcc ttgctgatgc atcgtacgcg tccgtcgctg 2160 gtgaatgtaa aactcgcctt cgcatcggaa gatttcgagc cgaagtccgt tttctcgtac 2220 tgccgacgtt aaccacgtcc gctgatgttg ttttgggtca gaattttctg agaaggtacc 2280 gcgcagaatt aagacccgcg gaaggttcct tgaaattgag acgacccacg ggactttcgg 2340 ttacgttacg atcggagaat gcgccatctc ccgtaacggt ctccgatgta ccatcggtca 2400 cgcttcttga gaaaagacct gagacaattc agatcgtctc gccgaaaaga gcttttcgcg 2460 atttgaacga agctggctgt cgatcgttgc ttgttgtcgt gaagcaaacc gcatccctgc 2520 tctctgacac accaacgctt aatgctgtgg atctgccgcc acacattgct gagaatgaat 2580 cccttgtgga gattatcaac gaatttccga aagttttcgc accgatcaca gaattaccac 2640 cggatagagg tgttaaccac gctatcccgt tggaaccgaa tgcacaaccg actttccgac 2700 cccagtggcg actttcgccg ttagaacgag aggaagtaga gaagcaagtc aaagatttgc 2760 ttgcgaaagg ctttattcgt ccttcgacgt cacctttcgg cgctccgatc ctcttcgtga 2820 ctaagaaaac cggagagtta cgcatgtgta ttgattatcg ggctttgaac aagattacta 2880 tcaagaatcg atacccgttg ccccgaattg atgatacact cgatcgtctc gctggtgcgt 2940 cgattttcac ggcccttgat ttagcttctg gctaccacca gttgcggatt actccagaag 3000 atgttcctaa gacggctttc acaacccatc tcggacactt cgagtggctt gtattgcctt 3060 ttggcctatc gaacgccccc gcaaccttcc agaatttgat gaatcgcatc tttgcaccgt 3120 acttgaaccg atttgtcacg gtctatttgg atgacatcct gatattttcc aagacccccg 3180 aagaacacgc acgccattta agggtggtgt taaaggtcct tgaggaaaat cagttacatg 3240 tcaagctttc caagtgcgat ttttggaaga acgaagtcca atatcttgga catgtcgtga 3300 acgcagaagg tatccgtatg gatcctaaga aggttgagat tattcgaaat tggccattgc 3360 ccaaggacat ctctgaactt cgatctttcg ttggccttgc gaactatttc cggcgattta 3420 tcgcaggttt tagctccctt gctgcacccc tgaccgatct cttcagtgcg aaaagattac 3480 cagatgaatg gcctgaacaa gccatacgag cctttgaaac gctcaaagct cgactattga 3540 acgacgtttt gttgaattac ccggatttta cgaagccttt cgaagtgatc tcagatgctt 3600 cgctgaacgg aactggcgca gtactcctgc aaaatgaccg accggtcgcc tttaccagta 3660 agaaattttc ccctgctgaa cggaactaca gtacgggtga acaggagcta cttggggtaa 3720 tcaatgcctt gcgagaatgg cgatgctatt tacagagttc cattcctttt aatctcgtca 3780 ccgaccacca tccactgatc tttcttaaga ctcagtcgac tgtaagccgc agacaagccc 3840 gttggcttga gttcctggct caatttaatt ttgagtggat ttaccgccca ggacgattga 3900 acgtggtcgc cgacacttta tcacgccatc cctccttggc atctgtcgtg gtattcaatg 3960 cggttaccac acgtcgctct cagggactta cgctggaccc actcatccaa cgtattgccg 4020 atgctacaaa aagagacgct catttccaga atccagatca tactcatttc tttctgacga 4080 atcctctcgg attctttcag atagaaaggg gggagtgcga gtaccgcatc gtggtgccca 4140 atgaccccgc cttgaaacga gagattatcg aacgaagcca cacgaatatc ttgtcaggac 4200 accctggacg agatcgaacc attgatttgg tagaacggaa tttctggtgg cctacgttga 4260 aagctgacgt tgcaggaggg taggatccgg gctggaatta gggaagagct ctgtcgcaga 4320 attagcctgg attttattcc tgacaaaaga attggtctgc cgaggtctgg aattgttctg 4380 gcggactcgc cggaggtatt cgaattgcgc tgtggagcct cggaattggg ctgtgctggg 4440 cctgaattgg cctgtccggg tgtcgaattg gcctgtccgg gtgccgaatt ggcctaacag 4500 ggtgttgaat tagcctgaca gggtatcgaa ttgacctgtt cggggtgtca aattgacctg 4560 acagggtatc gaattagcgt gttcagggtg tcgaattggc tgtcaagttg gcaggattgg 4620 ctcgggctgg catccaaaag cacatgactt ttaaggaatt tacagaaaaa ctttgcaaga 4680 ggaccgctta caagtgcctc atgtgtgtat tagtttcgat cccacgacat ggagtgggaa 4740 aacttgcaca cctggttacc gtactctggc actactacta ctactaccgg aggcaagcac 4800 tcagggccac gactgcatta cccagtcaag tcaacgttgc cgactttgtc gcatgttgcg 4860 atctttgtca acggaataaa gcttcatcag gcaaaccgct gggtctatct cgacctctgc 4920 cgattcctga acgaccttgg agcagcgttt caatggactt tgtactcgga ttgccctcga 4980 ctagaaaagg ttacaactcc cttgtggtgt ttgtagaccg actgactaag atggtgcatg 5040 tacgaccatg caagaaagaa atagacgcag aagaaactgc agatttattc tttgacaccg 5100 tggtacggct tcacggttta ccagacgcca tcgtctcaga tcgtgacaac aagtttactg 5160 gtgccttctg gacctctctc atgaagaggc tagaggtgaa gcaggcgatg agtactgctt 5220 tccatcctca gactgatggt cagacagaac gagttaatcg cgtccttgga gacatgttga 5280 gaaactactg tgatcaggaa ccttcacggt gggagacata ccttggacct gctgaatttg 5340 cgattaataa ttcgaagaat cgttcgacag gagttagtcc attcttcctg aactatggct 5400 atcatcctaa gacccctgta caactcgaac tcggtgatgc agttcccgtt gctaagggtt 5460 atgtcgatac gtatgccaag agacttgctg ctgctaaatc tgctttgatg gctgcgcaag 5520 atcgaatgac taagcaagag aataaaggac gacgtgatgt gtcgtttact gaaggacaac 5580 aagtctgact cagtacgaag aatttgaccc tccagaaagg ttcaaagaag ctgatgccta 5640 gatggattgg acctttcccg attgagaaga tgatcaatcc tgctgctgct agattggccc 5700 ttccagagga atatcgtttc cataacgtgt tccatgtgtg tgtgtggttg ttacagtggg 5760 ctccagactc ccgaagagta gagccatcgg gccagctggc cgtgcactgc agtagagact 5820 aatataccaa aagattatca cctcagataa ttaacctctc atcggtaacc actctcgcga 5880 gcacagcaat ttgccagata taattctcaa gaaggggtga tgtgcgccaa cggaatccca 5940 acctttccgt ggaattccca aagctgcgaa accctgaatg cggccccaaa agtcaacaat 6000 aactcgacaa attgcttctt ccgtaaggga agggccaggt aacagtgccg ggttggtttt 6060 catgtttgca gccatgtatc gttgttacgg ccttatcgat ctgatggcac cgtacaacct 6120 cctcgaccta cagtcggaat tgaacctgaa ggtcctacct ctgtatggac acctgaacgc 6180 atcctagatc atgatcaacg aaagctccga aaccgaaccc tgacacggta tctcgtgaaa 6240 tgggttggtc acgggcatga gaataacagt tggattgagg aacctgcttt ccccgacaga 6300 tctcttattg atgcctattg gactgtgcgc cgcgtggacg caggcgtcta gaaagggggg 6360 caga 6364 // ID TDH5_LTR repbase; DNA; PLN; 457 BP. XX AC AJ439552; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Debaryomyces hansenii retrotransposon TDH5_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TDH5_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Debaryomyces hansenii OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Debaryomycetaceae; OC Debaryomyces. XX RN [1] RP 1-457 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439552; Positions 1 457. XX SQ Sequence 457 BP; 145 A; 78 C; 78 G; 156 T; 0 other; tgttgaaata tattagtata ttttatgcga agtcagaata aattgagaaa tcatgtaaag 60 cggctgcaaa ttcttttata tctcaataga accagaatgc cgtttggctt tctattgtta 120 taccataaag attacgcccg ccttatgatt gttgaagcta tcattggata gcagtttttc 180 ttggaagaaa ggcactgata aaatgccttt cggtttccat atatctgcct tcccattcgc 240 tgtttacctg gaaacaacgg gaagcgtatt cctattcttg tgcaaatatt ggactatata 300 aagaggtctt tggacctcct tgaatacaga atatatatag agattaagta aattatatat 360 tataattgac actgactaac tgattaactg actgactgat tacctaacct gatactgacc 420 tgataatgta tgctactttc gagaatttac ttcaaca 457 // ID Gypsy-6_ES-LTR repbase; DNA; PLN; 452 BP. XX AC CABU01005454; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_ES_; KW Gypsy-6_ES-I; Gypsy-6_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-452 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005454; Positions 8851 8400. XX SQ Sequence 452 BP; 98 A; 134 C; 101 G; 119 T; 0 other; tgttacggtt acatagttta cggttatagg gagttgcacc cttcgggatt agcgtcgttc 60 ccatagggtg gtgttgacag ttccgcatca ttgcggaacc ccttgtctcg agcttcgtgc 120 tgccccacga agctcacttc ctgttggcat ccagtgctca gcaataatca aagtgcatac 180 cgtatccacg actggagacc ttctccacgc tccacaagcc tacatctagg cttcctctac 240 cgctgttcta gcgcgcatct ttgaactcgg taccgatcga gaggctgcta ccatcaggtc 300 ggtagctttt ggtaatcatt ctggagagcg tgacttcctt cctatacaca catccatgga 360 cttgtggcca cgaatagcca caagtctatg cctagagaga cccgctcaag tcacgagatc 420 catcccaagt cagagcctct ctttccgtca ca 452 // ID Copia-11_PSo-LTR repbase; DNA; PLN; 213 BP. XX AC AAQY01000174; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PSo_; KW Copia-11_PSo-I; Copia-11_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-213 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000174; Positions 72487 72699. XX SQ Sequence 213 BP; 62 A; 44 C; 58 G; 49 T; 0 other; tgaaccgtcc tggaacgctt cctattggct aatcttcggg atggtcaact tggttggttc 60 gactgtgtag caagcggtga ttgcacatgc agacacaaga ggacaacaag aaggaggaga 120 ggggagtaga gttgagaagg acaagtagga caactttggt aactttaatc aactcacttc 180 ggcatttgcc atcaacaaca caggcgttcc tca 213 // ID RTEX-2_VC repbase; DNA; PLN; 5366 BP. XX AC . XX DT 26-FEB-2010 (Rel. 15.02, Created) DT 26-FEB-2010 (Rel. 15.02, Last updated, Version 1) XX DE A family of RTEX non-LTR retrotransposons - a consensus sequence. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-2_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5366 RA Kapitonov V.V. and Jurka J.; RT "First examples of RTEX non-LTR retrotransposons found outside RT metazoans."; RL Repbase Reports 10(2), 140-140 (2010). XX DR [1] (Consensus) XX CC RTEX-2_VC belongs to the RTEX clade of non-LTR retrotransposons. CC The consensus sequence is ~1% divergent from several copies of CC RTEX-2_VC. The 3' terminus is composed of the (ACTTGTA)n CC microsatellite. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 18..1559 FT /product="RTEX-2_VC_1p" FT /note="ORF1." FT /translation="MSQPDVHMTPISPTPKLARPVTRVLFDLTERKDRNVR FT RKIIGVKRRSATVNVFTPGRKTPGPKQLEEHIAQSCRPFLDGCISTIKAEF FT QSLLAGHVDRCQQTSDDMKHRINDLRSLVEEQAEVVKSLQERNAALRQELD FT ATVGERRLTTQRLKELNERIEALETERSTARSEPIITRSQSADAKALDRRM FT EALEKRLAEHAASGPREQAVHCREMTENVDSVTARVATLEERFNDWERTRT FT APADGARCTGATGGRRMGPKAAPPAKQDQQDPREELHKEQQERPKQQQPKQ FT QPRPNRAVADTTTSKAPKVTAITTRPHEVAASCRGFGMTAGAPAPRPPKAL FT AETTSSTDGHIDRGALVIDGLPATWTQEEVIQKLQLRLQQLTSMKVAFLDC FT TVEAHPNVAARSSKRTTQRVRITTTPAAYYALYSLRKQLGLNAEEGADESF FT PAVRVSLALTALGESYKKGYQDVFRHLVDSKRAPSWRGTHLMALTEPDSGV FT WAKIDIRKMAAELRQAAK" FT CDS 1563..5357 FT /product="RTEX-2_VC_2p" FT /note="composed of the APE, RT, and CCHC domains." FT /translation="GARRGGNSIRFLIWNIHAFSAGKFDQIKAIRGLLNHD FT VIILTETKAPVNRTRAKEQLVLQGYSHLACTRAPRTGSRRSGGVSVFVRDE FT LAPCVREVGLTNTPVGVEIVWLRFHSVLPGGRALLLGAGYCSPQGSSVYSS FT TDGSGLAYSEVPDAVFGSITGELDRLRCMGDEVLITGDFNARTAAILDLPG FT VNGIGAHSLVGVPRKNRDSGLNCFGRRLAQMCLDTGLAIVNGRAPGDVPGG FT FTYSNSTEGHSSIDLCLASYGLFEQINTLKVLRSYLWGESNVLSDHHPLIL FT RLHAVLRPGAARGRKPHLARERIPIFDISRKGRFTELFREPDGIITETINS FT LKEKLVEGAPCDESMNDLRTLINKCARETFGGARGMEKSVKRDWWNEDCAA FT AWNDMMSFRKEVRDPVSGKLPDLHRTTWKAKHRAFKKARKAAIQEFEMEDM FT RRRIKDARFNPRGLWTWLRGGKPPPCGISDINAFTEHFSKVLNGTGETRQC FT RNEGIQFRWLDEDQVTHRRELAAWLNKDFTEDEIASGLKAMRNNKSAGLEG FT TPAEYYKYAIRETEGQQPVLVLAPYLTVLFNRIYGAEYPREFTTSTLSPVF FT KKGDVSCCDNYRGIAVGGPLSKLYANIIGRRLNNYCEGNRLRAVSQAGCRH FT GFGTEHHLFTLRHLISKHTVAGARPLIIMQIDFSKAFDSVDHETLWDFLMS FT YGLHGRILDSLKASYADVKFRVKLGNKLGPEFKVGRGVKQGCPLSVTLFGL FT FIEVFAHYIDAHDANCRVCLPSRWSTLREQSVSLAGGDLTNLLFVDDVSLV FT ATGHDRAECLLGLLEAYCKATGMAANAAKCEVLIFGGATRERKRLVEAEYR FT LGGAGLRVLTGNETARYLGLHYGPGVQFSACTKQLLTAGRRATFGLSTLCR FT DKKITTPKLCMSLYNTLVVPVFSYGAQVWGPDFINVNFEGAMANPMVQEQR FT AYMRTVVGARSPTMVSLYRELSQRPLQFHWTNLVLRFWNSVVKRPGTLCHR FT AFVADLELALGGATECWASKVLAFLTSLGVEPPTNTRGNDLISYYTTLKLP FT VESILKVFAKRLDARWECPNTLGDPRVFPIGITGAKACRYMNWMGAAPSRG FT ARLDWLEHTKGTMPQRLHHVLMRFRLGCWELEVNRPNGRERTARTCRLCDC FT GAVEDELHVFEECPAYKSIRAKYDGDLVLTGRSMRTTMTEAPPLALARYLS FT EIWEARHVALRRFALKRTRENEDDLPRTRINTNTTSMAPPAFTDTPALVCG FT TCNL" XX SQ Sequence 5366 BP; 1293 A; 1335 C; 1563 G; 1175 T; 0 other; aacatgtcac aaccataatg tcacaacccg acgtccatat gacccctatt agccctacac 60 cgaaattagc gcgaccagta actagagtac tttttgattt aactgaacga aaagatcgta 120 atgtgcgtcg caaaataatt ggagtcaagc gacgctcagc cacggtcaac gtctttacac 180 ctggcaggaa aactccagga cctaagcagc tagaggagca cattgctcag agctgcaggc 240 cattcctgga tggatgcata tcaacaatca aagcggaatt ccagagccta ttggcagggc 300 atgttgacag atgccagcag actagcgatg acatgaagca tcgcatcaac gacctgagaa 360 gcctagtcga agagcaggca gaggttgtta aaagccttca ggagcggaat gctgcgttgc 420 gacaggagct tgatgccacg gtgggtgagc gcaggctcac gacgcaacgc ttaaaggagt 480 taaatgagcg cattgaagcc ctcgagaccg agcgaagcac ggcacgaagt gagccaatca 540 ttacgcgaag ccaatcggcg gacgcaaagg cccttgatag gcggatggag gccctggaaa 600 agcggctcgc cgagcacgcc gcaagcgggc caagggaaca agcggtgcac tgcagagaaa 660 tgaccgagaa cgtggacagc gttactgccc gtgttgccac gctcgaggag cgtttcaatg 720 actgggagcg cacgcgcaca gccccggcag atggtgcacg atgtactgga gccacggggg 780 ggcgtcgcat gggccccaaa gcagcgccgc ctgcaaagca agaccaacaa gatccccggg 840 aagaactcca taaggagcag caagaacggc cgaagcagca gcagccaaaa cagcaaccaa 900 gacctaacag agccgtcgct gataccacca cctccaaagc cccaaaggtg acggcgatca 960 ctaccagacc acatgaggtg gccgcaagct gcagagggtt tggcatgaca gcaggcgccc 1020 ctgctcccag gccccccaaa gcactggctg agactaccag cagcaccgat ggacatatag 1080 accggggtgc actggtcatc gacggactac cagctacttg gacgcaggag gaagtgatcc 1140 agaaactgca actgcgcttg cagcagctta cgagcatgaa ggtcgcgttc ttagattgca 1200 ccgtcgaggc acacccgaac gtcgctgctc gcagcagcaa gcggacaacc cagcgggttc 1260 gaatcacgac aaccccagcg gcatattatg ccctgtactc gttacggaag cagctgggcc 1320 ttaatgcgga ggaaggagcg gatgagtcgt tcccggctgt gagagtgtca ctggcgctca 1380 cagcacttgg cgaatcgtac aagaaagggt accaggacgt atttcggcac ctagtcgata 1440 gtaagagggc cccttcatgg cggggtactc acctcatggc gcttactgag ccagacagcg 1500 gtgtctgggc gaaaatagac atccgcaaaa tggctgcaga gctgaggcag gcagctaagt 1560 agggagcacg ccgggggggt aatagcatcc gtttccttat ttggaatatc cacgccttct 1620 cggcaggcaa gtttgaccaa attaaggcta ttcgtggatt gctcaatcac gatgttatca 1680 tccttacaga gacgaaggcg cccgttaatc gcactcgtgc caaggagcaa ctagtattgc 1740 agggttatag ccaccttgca tgtactagag caccgcgcac aggctctcga aggtcaggcg 1800 gtgtatctgt gtttgtgcgt gatgagctgg ccccctgcgt gagagaagtg ggcttaacga 1860 atacacccgt tggggtggag atcgtctggt tgcgattcca tagcgttctc cctggagggc 1920 gggcgctcct actgggggct ggttactgct cgccccaggg gtccagcgtt tatagcagca 1980 cggatggtag tggcctggcg tatagcgagg tccccgacgc tgtatttgga agcattactg 2040 gcgagctaga tagactgcgg tgcatgggtg atgaggtgct tatcacaggt gattttaatg 2100 cccgtacagc agctattcta gacttgcccg gagtaaatgg aataggggca cactccctcg 2160 tcggcgttcc ccgtaaaaat agagatagtg ggctgaattg ttttggccgc cgattggcac 2220 aaatgtgtct tgacacaggg ctagccattg tcaatgggcg ggcacctggt gatgtgcccg 2280 ggggcttcac ttactccaac tctactgagg gtcacagttc tattgatctg tgccttgcat 2340 cttacgggct cttcgagcag attaacactc tcaaagtcct tagatcttac ttatggggag 2400 agtctaatgt gctgagtgat catcacccgc ttatccttcg cctgcatgcc gttttgaggc 2460 caggggctgc acggggtcgg aagcctcacc tagcacgtga acggatccct atttttgata 2520 tttcacgcaa gggccgcttc actgagcttt ttcgtgaacc agatggcatt attacagaga 2580 ccatcaactc tctcaaggaa aagcttgtag aaggggcacc ctgtgacgaa agcatgaatg 2640 acctgcgcac ccttatcaat aagtgtgcta gagagacgtt cggcggtgca cgggggatgg 2700 aaaagtctgt gaagcgtgac tggtggaacg aggactgtgc agctgcgtgg aatgatatga 2760 tgagtttccg taaggaggtc agggaccccg tctcaggcaa gctgcccgat ctacatagga 2820 ctacctggaa ggccaagcac cgtgccttta agaaggctag gaaggccgct attcaggagt 2880 ttgaaatgga agatatgcgg aggaggatta aggacgcccg gttcaaccca cgcggattgt 2940 ggacatggct gcgtggggga aaaccacctc cttgcgggat ctcagatatt aatgctttta 3000 ccgagcattt ttccaaggtg cttaatggta cgggagagac gaggcaatgc cgcaatgagg 3060 gtattcagtt tagatggctg gacgaggacc aggtgacgca cagacgggaa ttagctgctt 3120 ggcttaacaa ggattttacg gaggatgaaa ttgctagtgg ccttaaggct atgcgcaaca 3180 ataagtccgc gggcctggag ggaaccccgg ccgagtatta taagtacgct atcagggaaa 3240 ctgaagggca gcaacccgtg cttgtattgg cgccttactt aacggtgcta ttcaaccgca 3300 tatacggagc tgaatacccg agggaattca cgactagcac cctgtccccc gtattcaaaa 3360 aaggggacgt gtcttgctgt gacaattacc ggggaattgc agttgggggt cccctgagca 3420 aactttatgc caatatcata gggaggcgat taaataatta ctgtgagggc aataggctac 3480 gtgccgttag ccaggctgga tgtaggcatg gttttggcac cgagcatcac ttgtttacat 3540 taaggcatct tatctcgaag cacactgtgg ccggagccag gccgcttatt atcatgcaaa 3600 ttgactttag taaggcgttc gactccgttg accatgagac actttgggat ttcctaatgt 3660 cgtatgggct acacgggcgc atcctcgatt ctttaaaggc tagctatgct gacgtgaagt 3720 ttcgggtcaa gttaggaaat aagttgggac ctgaattcaa ggtggggcgt ggtgttaagc 3780 aagggtgtcc ccttagcgta accctttttg gactcttcat agaagtattc gctcattata 3840 ttgatgccca tgatgctaat tgccgtgtat gcctccccag ccgatggagc acccttcgtg 3900 agcagagtgt tagcctggcg ggcggtgatc tcactaacct acttttcgtt gacgatgtgt 3960 cactggtagc gacagggcac gatagagctg aatgccttct ggggctactc gaagcctact 4020 gcaaagcgac gggtatggcc gcgaatgccg ccaagtgcga ggtcctcatt tttgggggtg 4080 ctacgcgtga gcggaagcgg cttgttgaag ctgagtaccg gttaggtggg gcggggttgc 4140 gggtgctgac cggcaacgag acggcacggt atctcgggtt gcactatggc ccaggagtgc 4200 agttctcagc atgtaccaag caactactca cagcagggag gcgggccaca tttgggctca 4260 gcaccctgtg tcgtgataag aaaattacca cccccaagct atgtatgtct ctctacaata 4320 cactagttgt accggtgttt tcttatggag cgcaagtttg gggacctgac ttcattaatg 4380 tgaattttga aggtgctatg gctaatccca tggtccagga acaacgtgct tacatgcgaa 4440 ccgtagttgg ggcgaggagc ccgactatgg tttccctata tcgcgagctg tcacagaggc 4500 cactccagtt ccattggacc aatcttgtac ttaggttttg gaactctgtg gttaagaggc 4560 cgggaacgtt gtgtcaccgg gcatttgtcg ctgacctgga gttggcactt gggggcgcca 4620 ctgagtgttg ggcaagcaag gtactagcct ttcttactag cttaggagtg gaacccccca 4680 ctaatacgcg cggtaatgat cttatatcgt actacaccac ccttaaattg ccagtcgaga 4740 gcattcttaa ggtttttgcc aagcggcttg atgctcggtg ggagtgcccg aataccttgg 4800 gtgacccccg cgtcttcccc ataggaatta ccggagccaa ggcgtgtcgc tatatgaact 4860 ggatgggagc tgccccgtca aggggtgcgc gtcttgattg gctggagcac actaaaggga 4920 ccatgcccca gcgacttcat catgtgctca tgcgttttcg gttaggctgt tgggagttag 4980 aggttaatag gcctaatggg cgtgagcgca ccgcgcgtac ctgcaggctt tgtgactgtg 5040 gagcggttga agatgagttg catgttttcg aagaatgtcc cgcttacaag agcatacggg 5100 ctaagtatga tggtgaccta gtccttacgg ggcgcagcat gcgcaccact atgactgagg 5160 cgccacccct ggcattggcc aggtacctct cggaaatctg ggaggccagg cacgtcgcgc 5220 tgaggcgctt cgccctgaag cggacgaggg agaatgaaga tgacctcccg cgtacccgca 5280 tcaataccaa tacaacgtcc atggcccccc cggcttttac ggacacaccc gcacttgtgt 5340 gcggaacttg taacttgtaa cttgta 5366 // ID Gypsy-15N_PPa-LTR repbase; DNA; PLN; 420 BP. XX AC . XX DT 22-DEC-2009 (Rel. 15.07, Created) DT 22-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Gypsy-15N_PPa-I; Gypsy-15N_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-420 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1043-1043 (2010). XX DR [1] (Consensus) XX SQ Sequence 420 BP; 132 A; 63 C; 66 G; 159 T; 0 other; tgatattaca gacatctaac aagaagattt taagaatatt cttaaaatat tctattagat 60 tctaaaagat tttaaaagat tcttagaata ttttagaaga ttctaaaagg ttcttagaat 120 attttaataa gttctaaaaa gttctaagaa gattaaagaa gttgtctgag aagcttctta 180 aggttgcttc atcttcaagc aacatggaaa cttcttgaga agcttcctaa tacctagtat 240 atattagagt caaggctgag gggatcctca atcttgacaa tacatctctt ggagctctag 300 ctcacctctc ttggtattga tcttgtattc atttggttta atcaagttct tgttagcttt 360 cttgttgaaa ctcttctatt caacttcttg tttggtctct tgtatagtgt atccatgaca 420 // ID TCN760 repbase; DNA; PLN; 5176 BP. XX AC AF542532; AF542532.1; GI:24754014; VERSION; XX DT 08-JUL-2003 (Rel. 8.06, Created) DT 08-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Cryptococcus neoformans var. neoformans strain MMRL760 transposon DE Tcn760, complete sequence. XX KW Tcn760. XX OS Cryptococcus neoformans OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; OC Filobasidiella/Cryptococcus neoformans species complex. XX RN [1] RP 1-5176 RA Lengeler B.K., Fox S.D., Fraser A.J., Allen A., Forrester K., RA Dietrich S.F. and Heitman J.; RT "Mating-type locus of Cryptococcus neoformans: a step in the RT evolution of sex chromosomes."; RL Eukaryotic Cell 1(5), 704-718 (2002). XX RN [2] RP 1-5176 RA Lengeler B.K., Fox S.D., Fraser A.J., Allen A., Forrester K., RA Dietrich S.F. and Heitman J.; RT "Direct Submission to GenBank."; RL Direct Submission to Genbank (04-SEP-2002)Molecular Genetics and RL Microbiology, Duke University Medical Center, 289 CARL Building, RL Durham, NC 27710, USA. XX DR Genbank; AF542532; Positions 1 5176. XX SQ Sequence 5176 BP; 1399 A; 1142 C; 1313 G; 1322 T; 0 other; gcccttatcc gcatgctcgt ctatccaaaa tctaacatga tattttgggc ataatacgtc 60 acaggcagcc aagttatggc gattgctgtt tgttgtttgg ttcgaggggc cataaaactc 120 gggggcacgt caccgccagg gagaggattt ggaggacggt gacggttgga tgagtgtgac 180 tgaggaggta cagttgaaga aggcgggtct ccagggtgtt tagggacagg ggatggaaag 240 aggagtcgtc gggataggtg cgttttagcg gaataaaggc agttaaagca gtttatagtg 300 cagtagaagg tccaggaatc cgtggcatga gaagatacgt ataacagaag aagaaacgta 360 aaggaagttc tagaaacgga aggttattcc acgaacgacg acgaataggg aagctcacgg 420 tgcgattttt tttctaatcg atttttataa aaatcggcga tttagctgtg agtggcccag 480 gtgacgttaa taatttcaaa ccgatttctg gacctcggag ttaggtaaat ctccgtctac 540 aaagagatga ccagaggttc aaatctccag aaaaagcgag aagttccatg tcatgacatc 600 aggcaaaaat cgatagaaaa tcgatgtcaa aaggtcgatt tttgttaata atcctaatta 660 caaaaaaatc gattaaaaaa aaatcgacct tttgacatcg attttctatc gatttttgcc 720 tgatgtcatg acatggaact tcttgtgtct tgcatctttt tctggagatt tgaacctctc 780 cactacgtac gcctactatg aggtcatctc tttcggtctg tgctcatatg tttcaccatc 840 tatatatccc atttgcatgc atttatattc cttaccacaa cctctggaca gcaaagtgca 900 tcatgcaggg ctcgcaagac tcacaagact cccaaactgt agtaggcaag aaagacaatc 960 ccttcaagtg tcctacactc ccgtgagtag aatggtttga aaggcgcctc gaatcaatcg 1020 agatacatat ggaaactcac ggtgggcaat ttactaggtg ggatagggaa ttagagactc 1080 gaatgctcga gatcatcaaa gacgatgatg aaatgcgcaa agtcctgttc cccaggacag 1140 gagacaagac cggtgcgact agcaaagctg ccaagtgtga accgattggt cgtgcactgt 1200 ttgccggtaa agaaggattc gaatttctcg acgatgattg tcagatgact ccctctatac 1260 tcaagggcaa ggtgaaggac ctcagacaat gtgtttggct gaagctaaag aggtgagtgg 1320 tcaagctggt ttggattatg gaaccattat tttgatatcc catgttgacc gcttcgaatt 1380 ataaattggt tttgtaatta ggatgaagga cctttttcgg gccaatgaaa agaaaatggg 1440 tgcaactggg gctggtctct ctaacgaaca cgagatcaat cctgctaatg ataagttgct 1500 cggttcttgg cgtaagtttt tgtgcatact tcttcaagtc gcttgggaag agctaataca 1560 agactcggta gaggaggtaa agcagaaatg tccttggttc tacacgatga aggaccttct 1620 tccggagaaa gataaccctt tggaaggctt tcaagcagat gggaccacta ggccccgtac 1680 agatataatc aacgattgca agtgtactcc gttatttcgt ttatatgttt gggttctaat 1740 gtcgatatgt agctatacgt cgtcatcctc gcccagagcc tatcggccag gaggccagtg 1800 acactgtcaa tataggggat gaagccagcc ctgcatcgga tggcgacgat gaagacgctt 1860 ttctttcttt gccttcgacg aatccaggtg tcccagctag ccattctcct tccttgcgcg 1920 aactccttcc ttccgctaat ccccgagatc agtcacctga ctctgagact aggccttctc 1980 cagtccccgc tgctgcaact caccctcctt caacatccgt ggtacaaaag gcgaaggccg 2040 cagaccctag acggagtaat atccgtcaaa tggcttacga acatgtacat gacatgaaaa 2100 aaagtaagga gggtgagagg aaccaagtaa gctaccaatc atgtcttttt caatcaccat 2160 gctaattctc ttcaatgctt gctcaatcag aacgtaagta aagccacgta cgacaagctc 2220 agcaaatgtc gtccaacgct tgccagagcc atcgcacttg taagtgttgt gttttccttg 2280 aaacatatgt cgactgatac tttgtcttta gaatcgggag cagcgggaag agcacttccg 2340 gcaaacgttg gctgtacaga aggagatcgc cgaaagagat gaagaatacc gggagaggcg 2400 agaccaggcg gagcggaagc ggaagcggca aaaggaagaa gtgtacgaag aaatcctcaa 2460 gaggcggctt gagttggaag agaaaaggga ggctcgtctt caagagcagt gggagtctga 2520 gaagagaagg tcgggtttta acgcccgagg tccaggaagc gaatagctgg acctgttgta 2580 catatatctc actccttttt tccttccccg aatgaaccat atcgctgtgt tcggtcttca 2640 agtaacgttc atgtgtcatt aatattttcg cgagatctag cagtccactt gcttctttac 2700 gttccttccc cgatcctaac gtctcaagcg ctcctccaag agctcatacc tgcgaaacat 2760 ccctttgcac ctctcctccg ctcggccagc atcattagag atgtaagggc ggtacaattc 2820 cccctctgct gccagacctc cgtgcgactg gagccttgag accatctcct cgggcacgag 2880 ccttcttgct tcctcctccc tctcacttct gaggcgagac cttccttgcc tatcctcctc 2940 aagcatgcgc tggccctcta ggtggaatac atcctggtca aagtcccaag ttctgtcttg 3000 agactcgtcg tcatatgcga acatatgcaa gacaagggac gactggacgt aaagctgcag 3060 aagttccagc tggcgaaagg atcggatctg gtacctcaca cccttcgcaa actggaaacg 3120 gcctttgtaa aagccgatcg catgctcaga ggagatgcgg cacctcgaca agtaggtgtt 3180 gaacctgctc aagtcgctgt cacgagaggt ttcgctctca gagaaaggaa taatgatatg 3240 ccgacacaag ggaaagcctt ggtctgccca gcaccattcg ccaggtgaaa ggacttcatt 3300 gggttcgcgg gcaagtcgag aactctatgt attaaagggt caaggttaca agaaggataa 3360 aggccataac aataatcgcc aatgactggc tacttactgc aaaacaggag gcatcattcc 3420 tactgccgac gaaaccgcta ttgaaatcga caatcctcct gtccgccgtg ttaaagatct 3480 ggaaggtgtt atcgttagct atgcataata tatcggcatg ataaagactg gctaggaggt 3540 tgatggaata gttttttttc ctatcgaaga agctctcccc ttggatagtg ggacggcatg 3600 caaggggaat gagagtgcca tccaccacca gccacccatc cctccattcc ggcccaccct 3660 tttcttccat cttcctcttt gcatcttctc tctccgcaga tcctttagcg ggtaggccga 3720 tggcattcat taaggcgggt gtatccaaaa cagccttcag tacccgcgca gtgctgcgga 3780 caacgtggcc ctgggagaca ccaaaggttt tggagatctg cgcgagcgag gatgcgttgc 3840 ccgaatggcc cattcgatag aggaatagga tgagctgctg atttggggga gcctggggaa 3900 cgttgcttcc gctctggaag acaggatgac cttcgatatg actgagaatg cgggtgaatg 3960 tccagggata tacgcgaaca tcatcgcgga agatttccgg ccttgaatgg taccagtgat 4020 gaaggagtag atcgaagcgg tccgcctgct tcgtaatggg ctctttctct gccacaaacc 4080 tcactgacgt cagatgctcg agataagaat taacagaaga atacagtcca tctacgttct 4140 ctcccatatc ttcgtcgacc agatggataa aggacaagtc ggcgggtgaa ggcgaagagt 4200 taggattggg agagacggga agcttcgcca tcaatatgtc caagtcattt gtttcctcta 4260 cgatttcgga gagaggggaa gaggaaggca agggactgcc ggaggggagt cgaattgaac 4320 ggaggtgagc aatatcttcg gctgcatcga tgtctgcgct ttcttcttgt atgaggaaat 4380 cgattgcttc gatgcatagg agttctcgat tgctagtgcg aggcatggct gatggggata 4440 atgattgctt cgttatagta ttgtgttaga atcgatggtc cggaggatgt agtgcaattt 4500 agtgataaga tcggaagcag cggaaagggt tgcatatagc ttgtagacgg agatttacct 4560 aactccgagg tccagaaatc ggtttgaaat tattaacgtc acctgggtca ctcacagcta 4620 aatcgccgat ttttataaaa atcgattaga aaaaaaatcg caccgtgagc ttccctaatg 4680 aaaccggggc ggcggcgata tccgccatgc atatgaaaaa aaaaaatcca tgccttcagg 4740 cacggtcacg attttttttg gcgacgtttt tcatgtccat ggttcgatgc atgcacgtct 4800 gaaaagggta tagacatgta gagacgattt tcgtctacgt aacggtggcg gttgaatggg 4860 aggttgtggg ggtcacggat gagaacgaag gcgaaaagtg aggaaatttt caaaggtgac 4920 acggggaata ttaatatata aagataagtt agattctgtt tgtatatttt gtctccctga 4980 aaccgaggga ttgatctgct ggatggtaga tatgatgctt ttggaccact gtttctttcg 5040 ttcttatttg tctaaatgga ctactttata tttatacatg atgtcaatac catctaaaca 5100 agtcccatac gcttcgttac catctgtccg acgatatgct tcgacctagt cttgcgatat 5160 gatgcgaata ccagct 5176 // ID MULE-1_PI repbase; DNA; PLN; 3197 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW MuDR; DNA transposon; Transposable Element; MULE-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3197 BP; 957 A; 731 C; 747 G; 762 T; 0 other; gaggaaatac catcggtcag tagaaaacta ctgatctgtc cccaacgcgg cgcagaaaag 60 acggcaatca gtagaaaatg attaagttcg atccgtacct aactctaatc atagctacat 120 ttctgctgcc ttcagcaaaa ccgcttttgc cctaagcgta ccatgcctcg aaagccgcct 180 ccgaattatg ggagttctcc cttcgtggta gatctttctg acatcgctac agctataagc 240 atgggtgttt tgagggaaga cgcaaaagtt gatacctcag accgctccag ccaaaagtat 300 gggggagtat acgcgacgcg aaccaatatt gcagacactg agtttccaac acaaaaagca 360 gcaagggcaa catgtgacga ttttgcaacg gtatgtggat tccagttgat tgtacaatct 420 tcgagtgtga agccaaacaa ctcaggaaac gcgaagtacg tctgcaaaaa actaaatggc 480 atggagttct ttgataaagt taccccggca aaagatctaa gctgcccatt cttcatcaat 540 gtacacggaa agaatggggt atggaagatt actcaagcca acttcgccca caaccatctc 600 aaaaacattg gatctactca gaaaccactc gcggagggaa atatccctcg tgaaaaaaag 660 gcgaaaagga accggtctgt ccgtgaagct caactatcgg ctgtagtagc acgtgaaatt 720 ctgccagctc atgccaactc aacttcaact ctttcaggga aagctgtgca gaagtttttt 780 aaagggaagg gcatcaatgt cagcaaatct tcgatttcta ggatcaagca ggacctggac 840 gaaaaattgc atggagattt actcgagagc taccaaaaat tgaagtcgta cttggagctt 900 ctggcaagta agaatcccgg ttccttgtgg cgatatgaga gcgagagcga tggcgtgacc 960 ttcaagcgtg cttgcattgt cccgaacgca ggcgcccaca ttgtgagtat gactaaaaat 1020 ttgattagtt ttgatggcgc tcatttacag gaagacatga acaagcgagg ggtttttctt 1080 gttgccacta caaaggacta caacaatcat atcatacctt ttgggtttgc tctggtacca 1140 accgaaaatt acgacaactg ggtttggttt ttgagggcag tcaaagatgc aattaaagta 1200 gagagaatca cgattttgtc tgatcgtcaa aagggtctta tttctgcagt tgccgaagtt 1260 ttcccatccg ctggacaccg cttctgcctc cgccatatca tggataatat caacagagcc 1320 aaccatagac tctctcttca agacagagca acaatctgct ctatcgctcg ttccgactgt 1380 gaaaatgact acaacttgta catgaacgag ttggagattt cgaattcagg agccgcagaa 1440 tacctcacta agaagactga ggtaatcaca ccgagcggta ccgaacagag actagtgctt 1500 cccactgaaa actgggttaa gtataagttc ttcgagaaat ttggcctgtc aacatacgat 1560 gaaattactt caaacatctc cgaacaagcc aataattgga tggggaaaga tctgcgcagc 1620 tcaaaaccgc ttgatgcgtt taacctgtat tgctttaaac tcggccaatt gatgtctgat 1680 aaaagaaatg aagcagcaga ttggctacac agcaggagtg aaacggatct tgttcctgtg 1740 ctgctagcca aacgcgacaa acgagctgtt gtagctaaga tgtgtgatat tcaagctcac 1800 ggcgaggctt ttttttcggt acagcacgtt ggggctttac caaaacctgg atacatacac 1860 ccttggcgaa tggtcgattt gaattcgaag gagtgcactt gtggaaattg ggaggacgaa 1920 caatttccct gtgtacacgc gatttgtgca gctaccaaac atggtatgag acttgaagaa 1980 ctgtacgacg cacaacggct ttcaattggg cacttcaagg atacctacac gtttaagttt 2040 ctcccgtggc caacgacaga aagcctcgta accaacccgc aaacaaagat accacaacta 2100 gcaccggagc ccgagcgaat tggcaaaaga ggtaagaaac cgggaccaca tccgaaacat 2160 gcacgtaaaa aagcaaaaaa tgctttgtag ggacgacttt tccatttaca attcacccaa 2220 taggctcaaa ctttaaggaa actaacgaca caaacaattg caatcgttgc atgctgatta 2280 ataattaagg tatttctttc caatagatta tcttactgat cctcactctc aataaatatc 2340 agcagcaaac ggactgggga gtcaatctct gtgagtagat agaactctac taacgtaccc 2400 tgagagtaac cagttggata cgtcgtgtac ccagctactt caacgtcaac atgttatttc 2460 tgtgtactat tttttagctg ctcaaaacgc ctttatttat atggttgttt ttgtggagtg 2520 cacttcggtg gcattcgcca ttttggtcga tgcctccgct caacccccga cagcgtcacg 2580 cccgaacgat ccagcgacgt ctggacagct ccttttggca gcttcgtcta agcagagaag 2640 ctagcatacc gaaagaagtc gaccgagagc tggacgccga gcgtgcatcg tccataggtg 2700 gtgggttacg tgacgttgtc agtagaggag gaggtctttt tgcaaacgag cgccgagctc 2760 gtagaggaga caatgcttag ctcttcgagg tagaaagaat atacgccaaa cggtgggtca 2820 ataacttcgt atactacctt attcaatggg tggggtacac agagttgacg tgggagccaa 2880 gtaccaacgt gccagcgcgc ctaaagatgg tgttcgaaca cgagtcagtc aatttcgtct 2940 gggtctatca atctacgcgg ggaagacgaa cccagcgtcg cgagcagcca acgcgccgga 3000 gtcagagact gatagaccaa acgaggcagg actaagagaa aatgcaaatg cgaacttaac 3060 accaaacgag gcagcactaa aagaaaatgc aaatgcgaac ttaacagcac cccagtagct 3120 gtgaaatcag tagttgtgca ggcagcgccg cgttggggac agatcagtag ttttctactg 3180 accgatggta tttcctc 3197 // ID Gypsy-41_PIT-LTR repbase; DNA; PLN; 187 BP. XX AC AATU01002423; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_PIT_; KW Gypsy-41_PIT-I; Gypsy-41_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-187 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002423; Positions 20796 20982. XX SQ Sequence 187 BP; 49 A; 47 C; 40 G; 51 T; 0 other; tgacaagggc gtcggcctga ggatgctgac cgccattgca gcttgagttg aagttgcact 60 ttattttcta ttctttcttt ctaggctctt gtcccagtcg gagacaagac acgacacaaa 120 ctaacagaaa taccagtctt gaattaatcc tgttctaaaa gcccctctgc gagccaaggg 180 catatca 187 // ID Gypsy-11_PPa-LTR repbase; DNA; PLN; 557 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PPa-I; KW Gypsy-11_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-557 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 972-972 (2010). XX DR [1] (Consensus) XX SQ Sequence 557 BP; 157 A; 101 C; 101 G; 198 T; 0 other; tgtcacggac atactcatgt aagctaataa ttacatatat aaataggtag aagtaagtaa 60 aagtaggtaa aagtaagtta attctataat atttatatag aagcttccta gaagcttcat 120 agatgctgct ttgacttcat aggtgtcttt aattgacttt ttggattaga aacgtggtca 180 acaagttggc catgtgccac acatgttgtt agcttgaaga caagctaact atgtggccca 240 cacatagaaa aacttgcctt gtaagtcaag gcatgtgtcc tacaaagtca acacatattg 300 gaggtcctat agaacgtcgc cacgtagctc ctagttagat agtatatata gagacaagag 360 tgaagccttc ttcactcttg tcaactcctt tcttgcttct agtctagttt caagggtctc 420 tagttttctt gtcttttggc aatagccatt ccagtttctc tttcaatata catacttgtt 480 tatttatatt ttgttacctt tctttgagga aggctcactt gtctggattt tttttcatcg 540 agttcttgtc cttgaca 557 // ID GypsyPi-1c_LTR repbase; DNA; PLN; 346 BP. XX AC AY830102; XX DT 27-AUG-2005 (Rel. 10.08, Created) DT 27-AUG-2005 (Rel. 10.08, Last updated, Version 1) XX DE Phytophthora infestans gypsy-like retrotransposon GypsyPi-1c (LTR DE portion). XX KW Gypsy; LTR Retrotransposon; Transposable Element; GypsyPi-1c_LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-346 RA Jiang R.H., Dawe A.L., Weide R., Van Staveren M., Peters S., RA Nuss D.L. and Govers F.; RT "Elicitin genes in Phytophthora infestans are clustered and RT interspersed with various transposon-like elements."; RL Mol Genet Genomics 273(1), 20-32 (2005). XX DR Genbank; AY830102; Positions 1 346. XX CC LTRs are identical. XX SQ Sequence 346 BP; 98 A; 78 C; 67 G; 103 T; 0 other; tgtaacgggg tacgtagccc taagtgtacc ctggttacat gaagtgtgac acttcacact 60 tcaggagtat gacacgtcat actccgagat atttggtaca aggtaccaag gtcgttcaaa 120 gccaaccatt ggttaaatga cattgcattt ctataggtaa ctaacagttt gtattaaacc 180 caaacttaac ctacctataa atatactcag tttacaatct accttatttt aggtcacttc 240 gctctcttta attaaagagg ggacctgtga actgccgttc acctgagagt ttgtatactc 300 tcggaagata acttcctcta gcgcaaggtg ctgtgtgacc ccgtca 346 // ID Gypsy-62_PIT-LTR repbase; DNA; PLN; 575 BP. XX AC AATU01005792; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_PIT_; KW Gypsy-62_PIT-I; Gypsy-62_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-575 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005792; Positions 70600 71174. XX SQ Sequence 575 BP; 134 A; 174 C; 107 G; 160 T; 0 other; tgtaacgacg caccaacgtc acagccagcg atggccatga cgttggtacc aaggcgtcct 60 actttcttct atttctttcc tacttgtctt tgctgactgc caactgtctt cttaagttgc 120 caatgagcgg ccaggcagac acacgcctga ccggaaggca atcaccatgt ttggacgagt 180 attgccaaac atggagcttc aatgacagtc attctttttc ctttgaattc actatggaga 240 ttctgacccg gttcaaatga accgcagttc actactacgc tacgctactt caagattcga 300 ctcaaggact acttagaatg tagtatagtg aaatgcatat acttacatag gataccaagg 360 gaatgctaac aagcacttcc ttgtagccga caaacagcta accatttcaa tctcactttc 420 caatttacct tcttcgaggc acattaactg cctcctacgc cttaccttcg agttcccatc 480 gttggactct cgccgccctc ctccgcttcg ctcctcgcca cgcgactcgc tcctcgtcgc 540 tgttcctctg cgccgtgctc ttaccagtcg tcaca 575 // ID Gypsy-3_PSo-LTR repbase; DNA; PLN; 305 BP. XX AC AAQY01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PSo_; KW Gypsy-3_PSo-I; Gypsy-3_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-305 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000384; Positions 96925 97229. XX SQ Sequence 305 BP; 81 A; 76 C; 64 G; 84 T; 0 other; tgtaacgggg ttacatgaat agtgaccctg tcactattca aggatggcta catcggtcac 60 tcccctggat agtgacccaa gtggcctcag agccaacaga tacattttgt acgacacaaa 120 ctatagggaa cttaggattt gtatgcaggc caaatctgta ccaacctata aatacattca 180 gtcttagatc taccgctttt caagtcaagt cgtccccttc agaccaggga cacgtgaacg 240 gctgttcact tggagtttgt atactcctgc ttcctctatt aagaagtgct gtgtgccccg 300 ttaca 305 // ID Gypsy12-LTR_VC repbase; DNA; PLN; 252 BP. XX AC scaffold_9; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12-VC; KW Gypsy12-I_VC; Gypsy12-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-252 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 140-140 (2008). XX DR Genome; scaffold_9; Positions 24440 24691. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 252 BP; 54 A; 53 C; 66 G; 79 T; 0 other; tgtaaggttt tgcagttcgt tagcgcgcgc ttctgagacc atgtcgaaac ttcggagcta 60 gtggagcttg atcctgtggt tctccgtgtg aggcaatggc gcgttattat gactatttaa 120 gcggaccatt ttatgaacat tgtaagtcta agttgaagtt gaaagcccga tcttctgtgc 180 ttacgcaagt atatcggcca gtaaagtcag cttgcacttc ccagttgtta ggagcggcct 240 ggttcccttt ca 252 // ID Gypsy-10_PR-I repbase; DNA; PLN; 8100 BP. XX AC AAQX01000214; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PR_; KW Gypsy-10_PR-LTR; Gypsy-10_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8100 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000214; Positions 8329 230. XX CC Positions [5828-6421] - Reverse transcriptase CC Positions [7424-7915] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 3848..6778 FT /product="Gypsy-10_PR-I_1p" FT /translation="MTQRRGRATERPSPNPRPRQQSRMSSPSDNEATRPTT FT RSRTRTQTQPNGASADNEANSAAPAAAAAQSSHGPDTMSMQQLLVYLTQQQ FT QQYQAQVQAQMQQANERFEFLVASRGEHKKKDPSVYEGKYGEDIELWIFAT FT EQYYANKRHIMEADSSDFVTLISSNLGKSVLNWYRAFITDCERMSVHQTWS FT LFKCQLRSRFRPKDFEYDLRERMFHLKQKETIHEYVSKFQDLLSQTELEIS FT ELEKRFFFQNGLREETAKKIKEESPSTLQDAMEIASNFEFAHYSGKPPRIP FT SKSSQSPAESGKRSIKPTSQKPKRFEKKKNKNDDWTKTATCNNCGKVGHIS FT PQCTAPKRKEANRYISGALYAILEAEAHAYKETGQERSVTIFIDNGCSLNG FT VSEELVKTLGLEVTEGELMQVDLGYDQVVHRPRRTVEMNLQLPGFPLTSGT FT FQVMPVPENKDVILGMMWLREQNPDIDWSTGQVTPRIKMEDEQDAQLRLPK FT QRPARRVAGQRRSRIDQSREIFNHYRQHGHKCQYGKTRLISAQQFLRMLRH FT DKDIEAVFAINPHDSEKAERFKSQGWEALKDNPAYDILRKYADTVFRTELP FT NETPPVREGIEHEILLQPGTTPISVKQWCQSPDQRITIQDWTKEMVQAGII FT RPSTSAFSAPTFCVKKPVGWRIVHDYRQLNLATILPAIPMPRKEDTFDAMA FT GSHWFSCMDLLWGYYQVKRRESDIPFTAFSTPDGLFEYLVTPMGLSGSPGT FT FNRLLQKVFRDLRDVMRVYFDDIYVFTPSEDVAEHLEALDRVLKRCEEQQL FT YIKLSKCQFCVDEIPCLGDFVGRKGVRMDPDKVRIIAEWPVPKTKKQMESF FT LGTTVYVSRFCKDFAQFAGPLHDSIKGKRPRETIELSDDQLKCFKELKRRL FT ASPPVIGLPDFTKPFGIRMDASNFAIGGVLFQKEGELEHPIAYTGRKMKPA FT ELNYPVREQELLAIMHALRVSS" XX SQ Sequence 8100 BP; 2186 A; 1949 C; 2010 G; 1955 T; 0 other; aggcggaact tgttggagct ggactgctcc ttccggggaa tggggggatg acggccacgc 60 gggtattctt cacgcggtcg tcggttgttg gtgatcgggt cttggggtaa gtcgatcacg 120 tggggggtgt cctttggggg tgctgttata gccctttccg ttgcttgccg cctcctctgg 180 cggggtcttg agttgagatg agattgtacg atcgccccct ggccaagcta tccaggtgtg 240 cgacgtgtcc ttggttgact aggtgagccc ttcttcgggt aggccaatgt agttccttcc 300 ccgggatgtg tggacgccac ttgtgtcttg caaggcaaat cagaatctct taaccaaaag 360 taaaggtcct aaagatctct ccctatcctg ctctctccct atcccgcttg cgcatccctt 420 gattgcacac cgtagcttga acttggtctg atgtaccaag atcgcggtac cgtgtcgaaa 480 agattggtcc attgtaccca caataatcgt gagtacagat ctcgtatcga aatgtttgtc 540 gcatgtcgat ctggatcaga ttgcgtatcg aaatgattgc tcaatatcga tcttgatcag 600 gtcggcataa atgattacgc catactcatc aggtcgacat gtatccactt caatccggag 660 gtggatgtct tctgaacaca accggacata actggacata actggacacc actgtacaca 720 actggccata actggacaca tccgcaatct ttccatcgcg attcctccaa acgcgatctc 780 atgccatcag tcccttccga atcgctcaat ctctccaact ggcaagtcgc ttcacctcac 840 aattgattgt gtgcttactt gtgggcgtga tagtaggata gcaagagaag cagtcatatt 900 attttctgcc gtcgttgctg gtcgatgtcg ggggcgtgcc ttctgagggc acaagttatg 960 aagcttgcat tgaagcaagt ccgctgccag gaagtggcgt ggcggatacc ctaacatttt 1020 gcagcattgc aggcttcgaa agcatttctt gcgccattgt agccgtgagg cgtccgccga 1080 ttcgagtgta gcgctcaacc gcatccgatt tccacctccc gaacattttt accgccaaac 1140 tgtcaaaccc agcgttgaag agtgccgttg cgcctccact tcgcagcgaa tgtgagccgt 1200 accgctctgg atcctgacct gttcgctcat ccgcgtattt tatcgcgttt atcacgtggc 1260 gcacttgagc atttctggta gcgtcgattc tgcacaacag tgtggctgcc gcaactccga 1320 gtgacttgtg atgttgcacg agataccacg cagctagaac tggacagcac caccgggaac 1380 cggatcgctg gagcctgcga gttgcacctt ctccaaattg gtcagctttg cttcccctaa 1440 aacggatgat caccgccacc acctcttgca gcttcttgac attatttccg tcggggccga 1500 tgaaattcac atctgaccgc tggatggcgt acggctgcac cttggtaccg caagctagat 1560 attctgaccg tcggagaaga aagaaaaagc ccaggacaga agccccccaa acgagtcggt 1620 cctgggcgtt ggcgaaattg agaactttgt gcatgcaccg gagaattggg atggtaactg 1680 gtgatttggg tatgctgggt gggtcggagc gtcgcatccc tgtgatggcg agctggtgtc 1740 ccgggagaag gccgacacta taaccgagtg acctccgatg atgccacgaa acctggctga 1800 tcttggagag cacggtgccg gcagcgtttc cggaagcgga ctgattccat ccgtagtacc 1860 agcagtatgt tgcgaataag gctagttggt acgagtgctg tcgcgggttt tctggaagcc 1920 actgcgagaa cccaacccac gcgcaccact cgcaccattg cttccaggtg ccgctatact 1980 ttgctgccga tgtcgtggcc aatgaacggg actgaagctg ctggagaacc ctgtgtagag 2040 ttttctgcat tccggcggaa ctgaagtctg tgtccagatt aatgagaagt tagtccatcg 2100 agttagatac ggctcggtcc aagcacgtga ggctgcatca gccatgatat ttgtcgatcc 2160 tggtaggtga tcggctgaca cgcgtaaatt aaagtaagcc tcggcaagac cgatggccct 2220 gttgatttct tggctcagga cattcgaagc ttgtaatttg ttgctccacg tcacggctga 2280 catgttatcg ctccagcatt ttacgtgcac cagcccgccg gcggcttgcg tattccactt 2340 cgctccccat gaccatagtg cgagagcaat gcacaaatgc tatcttacat tgatcgaaaa 2400 atccgtattg ctatcagcag tttgatcgat ccacatcagt tcatgtttat caaatttgat 2460 ctggatgaac atgttcgacg acggatcaag gatgacgagg ccaacattgg aggcgtccat 2520 gtacagttcg acgtgcggcg taggcatctc cccgaacatt gttaatggta gctccgcaag 2580 gcacccatgg tccagtattt ggttgaacca caccagatct gctgtgtgac gcagttgccg 2640 tcagcggcag gtattgccgc aactacaacc aatctggttg aacaataaat tttcgtatgc 2700 atgtctacca atatctgaat ggcgcaagat attcaaggat aagaacaaga atctgatacg 2760 tccgataatc attaatttga ttggtctaaa tcatcaagat ttgataatat ccagtatggg 2820 aactggattt ttgatgaaac tacaactacg tggatatttt agacaagatc attggtagaa 2880 cagatagcag ctgagattag agaaggatag gctttagggt aggacactag tggtctcaag 2940 gacatccgta aaagcaaaca gctcaatctc aatcacttct caatttgctt tcaatagcaa 3000 caacccctcc accaacctcg tcacctgcct acccaaggac cgcacgccgg acacgccaag 3060 caagaccttc ctcggcgcaa gactgttaca tagtagcact tgccgtgtca agcttcggtt 3120 aaagttcaag agttcaaggc tagggtactt gtggccacat agtgggaagc gagtatcctg 3180 tgattattag tgcgagccac atcgtgggga gcactaggtt gcgaaagggt tgtcttttag 3240 cacgaacgtt acgttcagtg gctagtcggt gtggttgtga accagtgtgg ttactcgatt 3300 ggtactcctt ctgtgggtcc gcggtttagt gctttcactt tgtgaatccc tgtcccgcct 3360 cagaaaacac ggagaataac ttcctttcgg tatacctact tggtttcact tgatctacat 3420 ccattgctgc tgcaactgtt tcagtgtgca ttgttgcatg ggtaaacgaa aaactcgcga 3480 gcccgaagaa ccgttcgtca acaccactaa ggtcttaacc gatcgccata agaagctcga 3540 taagcttcga aaggacctgt ggttaacgac ggtaaatcaa cttaaggttg tcaaactcat 3600 ccgaaacgac atcccggatt gtaaaaattc aagtgcgagg aacgtcgttc acgaattttc 3660 ggaacagctg aaacagctta tcgagcgtac ccaaacggtt ttggaaggaa cattcgacca 3720 cttcgtccaa ctttacaaga aacgtagact gtaaataaga atttagacag ttccgtttta 3780 ttttcaaagg ctttagttta gggtttcggt agtatatata gtgacggcgc tgagaagtcc 3840 ggttgatatg acccaaagaa gaggtcgtgc aactgagcgt ccgtccccga accctagacc 3900 tcgtcaacag agcagaatga gctctccgag tgacaatgaa gccacacgcc cgacaacacg 3960 ttccagaaca cgcacgcaaa cacaaccgaa tggggctagt gccgataatg aggcaaattc 4020 ggccgccccc gctgcagcag ctgcgcaatc aagtcatgga cccgatacga tgtccatgca 4080 gcagttacta gtgtatctta cacagcagca acaacaatat caagcccagg tgcaagccca 4140 aatgcagcag gctaacgagc gttttgaatt cctcgttgca tcaagaggcg aacacaagaa 4200 gaaggaccct tctgtgtatg aagggaagta cggcgaagac attgagctat ggatcttcgc 4260 tactgaacag tactatgcca acaagcgcca cataatggaa gctgattcgt cagactttgt 4320 gacgctaatc tccagtaact tgggcaagtc cgtgttgaat tggtaccgtg cctttatcac 4380 ggattgtgag cgcatgagcg ttcaccaaac atggtctctg ttcaagtgtc aactgcgttc 4440 acgtttccga cccaaggact tcgagtatga tcttcgtgag cggatgtttc acttaaaaca 4500 aaaggaaaca atccacgaat atgtctctaa gttccaagac ttgttgtctc aaactgaatt 4560 agagataagt gaactagaga agcgtttctt tttccagaat ggactacggg aagaaaccgc 4620 gaagaaaatc aaagaagaaa gtccgagtac gcttcaagac gctatggaga ttgcctctaa 4680 cttcgagttt gcacattact cgggtaaacc acctcgcatt ccgtccaagt catcgcagtc 4740 accggccgaa tccggtaaac gttcaatcaa gccgacatcg cagaaaccaa agcgattcga 4800 gaagaagaag aacaagaatg atgactggac gaaaacagct acatgcaata actgtggcaa 4860 agttggccac atttccccgc aatgtaccgc tccaaaacgt aaggaagcaa ataggtacat 4920 cagcggcgca ctgtatgcta tcttggaagc cgaggctcat gcgtacaaag aaacgggtca 4980 agagagatcc gtcaccattt tcattgataa tggatgcagc ttaaatggcg tatctgagga 5040 attggtgaaa acgcttgggc tggaggtaac cgaaggcgag ttgatgcagg tcgaccttgg 5100 ttatgaccaa gtggtacacc gtccgcgtcg aaccgtggag atgaatctgc agctaccagg 5160 tttcccattg acgtcgggaa ccttccaagt catgcccgtt ccagaaaaca aggatgttat 5220 tctgggcatg atgtggctgc gagagcaaaa tccggatatc gactggagta cagggcaggt 5280 cacaccacgc atcaagatgg aggatgagca agatgctcaa ctaagactgc ctaagcaacg 5340 cccagctaga agagtcgctg gacaacgcag atctcgtatc gaccaaagtc gcgagatttt 5400 caaccactat cggcagcatg gccacaaatg ccaatatggc aagacgcgac ttatttcagc 5460 tcaacaattt ctaagaatgt tgcgtcatga caaggacatt gaagcagtct ttgccatcaa 5520 tccgcatgac tcggagaagg cagaacgctt taagagtcaa ggatgggagg cacttaagga 5580 taatccagcg tatgatatac tacgcaagta tgcggatact gtttttcgca cggaacttcc 5640 aaacgagacg cctcctgtac gagaaggaat cgaacacgaa atccttctcc agcctggtac 5700 cacgcctatt tcggtgaaac aatggtgcca gagccctgat cagcgcatca caattcaaga 5760 ttggaccaaa gagatggttc aagcgggcat tattcgacca agcacgtctg cattttccgc 5820 gccgacgttc tgtgtcaaga agcctgttgg atggcgcatt gtgcacgact atcgtcagct 5880 aaatctagcg acaattttgc cggctatacc aatgccgcgc aaggaggata cctttgatgc 5940 catggcgggc agtcattggt tttcgtgcat ggacctactg tggggttact accaagttaa 6000 gcgacgtgaa tcggacatac cgtttacagc tttttcgacc cctgatggtc tatttgaata 6060 cctcgttact ccaatgggac tcagtggtag tcccggaaca tttaaccgtc ttttacagaa 6120 agtctttagg gacttaagag acgtgatgag ggtctatttt gacgacatct acgtattcac 6180 cccgagtgaa gatgtcgcag agcaccttga agctttagat cgtgtgctca agcgatgtga 6240 agaacaacaa ctttacatca aattatccaa gtgtcagttc tgtgtggacg agattccatg 6300 cctaggagat ttcgtcggac gaaaaggagt ccgaatggat ccagacaagg ttcgcatcat 6360 cgcagaatgg cctgttccca agaccaagaa gcaaatggag agcttcttag gaactacggt 6420 ctatgtgtcc agattctgta aggactttgc acaatttgca ggaccacttc atgacagcat 6480 caagggaaag cgtccacgag agactattga actctcggac gatcaactca agtgcttcaa 6540 agagcttaaa cgccggttag cctcaccacc agttatcggc cttcctgact tcacaaaacc 6600 ttttggtatt cgcatggacg cctcgaattt tgccatcggg ggagtcttgt ttcaaaagga 6660 gggagagcta gagcatccaa tcgcgtatac tggccggaag atgaagccag cagaactaaa 6720 ctaccctgtt cgagaacagg agttgctcgc gatcatgcat gctcttcgag tatcttcttg 6780 accgaccgtt tacggtcgaa acggatcaca aaagtattga gatgattatg actcagaaga 6840 ctacaaaccg acgcgttgca cgatggttca atgagcttgc tgaattccag cctttgttca 6900 agtggattcc cggagaaacg aataccgtgg ctgatgcatt atcacgaaat ccagagtttg 6960 aacagaaagc tgctcaagta agcttacaag agctactgga agcagccaag aatcgtgaaa 7020 ttgtggcaac gattgtacca aacaatgtga cagtggccca aacggcgaag tcgatgtatt 7080 cgtggaacaa ggatttacag tggatcatca agaagctgaa gcaaggggat gaattgccta 7140 aatactcttt acaggatggg attattttct atcaaactgc ggaagaccag actccacgat 7200 tgtacatccc tgatgacgaa gatctgaaga atcgagtcat ttgcgagaat cacgatgcag 7260 tagcagcagg acacccaggg ttttataaga cctatttggc agtacgcgag aaatactact 7320 ggtcgaagat gatgaagtac atccagcgct atgtcaacac atgtgaaatg tgtcagcgca 7380 gcgcaacaag gcgagacaaa ccaagccgcc gggactactt caaccactag acataccttc 7440 gggtagttgg acagacatct caatggattt tgtagtgtca ctgcctgtca gcaccaaagg 7500 ttacgatgcg attatggtaa tcgttgaccg gctgacaaag cgagcgaagt tcgttgcgac 7560 gaagacaacg gacaacacca cagatatcgc taacgtgttc atgaagaatt atgtaaagga 7620 tcacggttta cccaaaacca ttatatccga tcgagacacc aagtttacgt ccaaactttg 7680 gcagagtatt gtgagtgcgc ttggtacgca gcacaacttg tcatcggctt tccgacccca 7740 aacagatgga caaacggaac ggacaaatcg atttatcgga gattatcttc gaggtgtcgt 7800 caacccagct caaaatgact gggatgaata tctccatttg gcagaaattg tctacaaccg 7860 acgtgtacac tccacgattc gaatgtcgcc gttcgaagcg gatctaggat atgtccccta 7920 catgctagac gatgtggcat cagatccgga gtttaagaaa ttggagaaaa cagcgcaaga 7980 gtttttactt cagcaagaga ctctactcaa ggtcgcacaa gcccgtatga gtgaggcgca 8040 ggagcgtatg aagtattatt acgacaagaa tagacttgtc cagaacttcg aagtcaacga 8100 // ID Gypsy-21_PR-I repbase; DNA; PLN; 5056 BP. XX AC AAQX01003198; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PR_; KW Gypsy-21_PR-LTR; Gypsy-21_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5056 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003198; Positions 7354 2299. XX CC Positions [3854-4339] - Integrase core CC 'AGGAG' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 35..5053 FT /product="Gypsy-21_PR-I_1p" FT /translation="MESEEAADLSIDVPPLPASPEPQEMHAATPTSNRAAR FT GLGGQRRLLWSGPFATLTAGSAAWGSSSDDGDVTMATASPGRDTPAARASS FT AEKEKAESGRITNAPTLPAAPRYAGSTMKDRRSFMRAYETYYHALSAFDTG FT FARPFIMPVSGCIEERTCQMICMYEFQKNPNEVSEGEWISYFLQAREPELE FT DYTAVDLAMKQLKMKTTFPDAASRMGQLRADMHHILDEHTVEQVMLEREQK FT KVVKYFVAALEPAEFREAIQKRLQYAQHKALKTDIVKCYAWVLEQLKAYLV FT WQPAQVKPQARPQSKFGQQPRRPQQEDNHSHGAKPGPSSGNSSRGRAGPTE FT GKPPPKPRSGNPPRRTCLKCGSQTHLVRQCPDVTPDEVDKLLAARNPSTNS FT ATSTHFKRVQVVNEDSAETGCAQATTSNHPLRHSIGLRDDDGTAQTTIDGF FT TLQTSLLDSGADDSVVSGGIVRALESAGVPILTFSANTALEPVGGHLIPVA FT RKVRFGEVEFATSAGPLLLRNLDCLVHEEDRSLALTVGRPVMNRLGYSTDD FT LLAAARTRQPEYCLTEPAEEDSDKNNSPLVRVQAMRTRLLDELDVDGDDLD FT ELVASPRLVAETTRAVQEALELKIQEARANGLTSKEGDDLQELLFRHIDVF FT RLSFGDDPPVRVPPLRVHLKEGARPVKAKARRYPPDHKRYLEEHIEELVRH FT GLVKKNHRSRWASAPRIVAKRKPGEYRMTVDTRAVNALTEPMPWPMPDIEA FT DLAQVEDSEAYFTIDWWRGYWQLPLDEDSQELYTIMTHRGMFTPTRVLMGS FT TDAVAYCQGVVEEIFGPLRGGQILAWLDDILGYARSPSALLVVLKNVLELC FT AEYGLKLHPLKCCFFTREATWCGRMISAQGVRHCPSRIDGLVNLPAPHTAG FT ELQQFLCAVNWMRGNIPEYNALTAKLYEVLEAAATVAQSRKKTRLHRVLLD FT SVGWGPEHDTALANVKDALLKMVTLAHPKDDWEVCLFADASQTHFGAVVSQ FT IPPEDAGLPIEKQRHQPLAFLSGSFTGAMARWSTIDKEAYAIVAACKRLMY FT LLLRPRGFRIFTDHRNLQYVFDPLAVNSSLGRHQVDRLQRWAMTLTAFRYV FT IEHVRGDENVWADLLSRWGASAPTKVASARMSTLLVVNRVSPLTEPDFAWP FT SELDIVTEQRQQLAARDPSDALPLCRWNDEMGLFVTESGRIWIPEQCVDLQ FT QRLCVLAHAGLSGHRGEGVTQQMLAEKFDWPTLKADVKAFVRSCLHCMVVG FT ERVVPRPFGQALHASAPNEVLHFDFLSLPASSTGEPYVLVLKDDMSGYCEL FT VTCESATAEAACSALLDWFKRFGPVTQWISDRGTHFKNTILEQVRKFYGGS FT HHFTTAYCPWSNGTVEVVNRLLLRCMRAMLSELKLHAAEWPTILPLVQSAL FT NQMPADRLGGVAPVTAFTALPASPPIHAILHPQTQVLFDVEAVYEKQRQHL FT ADIRVALDNMHRAVTSVAETKREQARARRAAQSGVHMANFEIGDFVLVAQV FT IGRVNKLAVHWRGPRRIVRALTDYIFEVQDLSPPFQVSTHHASRLQLYADS FT RRDVTEDLIAHAMHADGGHLVAKFLKCRLGAESHVWEIEVEWVGLDPLEAS FT WEPAAIMFEDVPRLVEQFVNSQPDDSAAHAMWSSLVDERPRTPTKKGKGAS FT KKRG" XX SQ Sequence 5056 BP; 1135 A; 1339 C; 1483 G; 1099 T; 0 other; aaattaattt ttcgcggatt tttgactcaa gacgatggag agcgaagaag ctgctgacct 60 atccatcgac gttcccccgc ttccggcgtc tcctgagccg caggagatgc acgccgctac 120 gccgacgtcg aaccgcgcag cccgaggctt gggcgggcag cggcgtctac tttggtccgg 180 tccctttgct acgctgacgg ctgggtctgc agcctggggg agctcttccg atgatggcga 240 cgtgacaatg gccacagcat caccgggacg ggacacgcca gctgcaaggg ccagttcggc 300 agagaaggag aaggctgagt ctgggcgaat cacgaacgcc ccaacgcttc ctgcggcgcc 360 gcggtacgcg ggcagcacga tgaaggaccg acggagcttc atgcgtgcat acgagaccta 420 ctatcatgcg ctcagtgcgt tcgacacggg tttcgcgcgt ccatttatca tgccggtcag 480 tggatgcatt gaggaaagaa catgccagat gatctgcatg tacgagttcc agaagaaccc 540 caacgaagtg tcggaggggg agtggatttc ctatttcctg caagcccggg aaccggaact 600 ggaagactat acggcagtgg acctggcgat gaaacaactc aagatgaaga caacctttcc 660 tgatgccgca tcacgaatgg gtcagctgcg ggctgacatg caccatatcc tcgacgaaca 720 taccgtggag caggtgatgc tggagcggga acagaagaag gtggtgaagt attttgtcgc 780 agcgctggag ccggcggagt tccgcgaggc aatccagaag cgtctgcaat acgcccagca 840 caaagctctg aagacagata ttgtcaagtg ttacgcgtgg gtattggagc aacttaaggc 900 atatttggtc tggcagccag cccaagtaaa gccccaggct cgcccgcaga gcaagtttgg 960 tcaacagcct cgccgaccac agcaggagga caaccacagc catggagcga agcctgggcc 1020 gtcatcggga aacagtagca gaggtcgagc aggtccgaca gagggaaagc cacccccaaa 1080 gccgcgcagt ggaaacccgc ctcgtcgtac ctgtctcaag tgcggatcgc aaacgcattt 1140 ggtgcggcag tgcccagatg taacccccga tgaagtggat aaactcctgg cggcgcgaaa 1200 tccgtcgacc aatagcgcga ctagcactca cttcaagcgt gtgcaagttg tgaatgagga 1260 cagtgccgag acaggttgtg cgcaagcaac tacgtccaat caccccctgc gtcactcgat 1320 aggcttaagg gatgacgacg gtacggctca aacgactatt gacggcttta ctctgcagac 1380 atcgctgcta gatagtggtg cggatgactc cgtggtcagt ggagggattg tgcgcgcttt 1440 ggagtcggct ggtgttccta tcctgacgtt ttcggctaac acggcattgg aacctgtggg 1500 tgggcatttg atcccagttg cccggaaagt acgttttggt gaagtggagt ttgcgacctc 1560 agcaggtcca ctacttctac gcaacctgga ttgtttggtg cacgaagaag atcgatcgtt 1620 ggctctaacc gtgggccgtc cagtgatgaa ccgcctaggt tactctacag acgatctgct 1680 cgctgcagca cgaacacgcc agcccgagta ctgtctcacg gaaccagcag aggaggactc 1740 cgacaagaac aactcgccgt tagtccgcgt acaggcgatg cgaactcggc tccttgatga 1800 attggacgtg gacggtgatg atttggatga acttgttgca tctccaaggc tcgtcgcaga 1860 gaccacgcgg gccgtacaag aagctctgga acttaaaata caagaggcgc gtgcgaatgg 1920 actaacaagc aaagaagggg acgatttgca ggagctcctg tttcgccaca tcgacgtgtt 1980 ccgactctca tttggtgatg acccgccagt gcgcgttccc ccccttcgcg ttcatctgaa 2040 ggaaggagct cggcctgtga aggctaaagc gcggcgctat ccgcctgatc acaaacggta 2100 tttggaggaa cacatcgaag aactcgtccg tcacggttta gtgaagaaaa atcaccgcag 2160 tcgctgggcg tcagcacctc ggattgtggc gaaacggaaa cccggggaat acaggatgac 2220 tgtcgacaca cgggccgtca acgctctcac cgagccgatg ccgtggccta tgccagacat 2280 cgaggcagac ttggctcaag tcgaggactc tgaagcgtat ttcacgattg actggtggcg 2340 aggatattgg caacttccac tggatgaaga ctcacaggaa ctctacacta tcatgacaca 2400 ccgcgggatg tttaccccga ccagagtgtt gatgggcagt acggatgcgg tagcatactg 2460 ccaaggcgtc gtcgaggaga tttttggacc tcttcgtggc ggtcagatcc tcgcctggct 2520 cgacgacatt ctcggatatg ctcgctcgcc atccgcgctg ctggtcgtgc tcaagaatgt 2580 actggagttg tgcgcagagt acggtttgaa gttgcaccct ctaaagtgtt gtttcttcac 2640 ccgtgaggct acctggtgtg gacgaatgat ttcagcacaa ggtgttcgtc actgcccatc 2700 tcggattgat gggttggtaa acttgccggc gccacacaca gcaggggaac tacagcagtt 2760 cctttgtgct gtaaattgga tgcgtggcaa tatccccgag tacaacgctc tcacagcaaa 2820 gctgtacgaa gtcctggaag cggcggctac tgttgctcaa agtcggaaga aaacgcggtt 2880 acatcgggtg ctgcttgact cggtcggctg gggtccggag catgatacgg cactggccaa 2940 tgtcaaggac gctctgctca aaatggtcac attagcccat ccgaaggacg actgggaggt 3000 atgcctattt gctgatgcga gccaaactca tttcggagca gtggtgtcgc agattccacc 3060 ggaggatgcc ggcctgccca tcgagaagca gcgtcaccag cctctcgctt tcttaagcgg 3120 atcattcact ggggctatgg cacgctggtc tacgatcgac aaagaagcct acgcgattgt 3180 tgcggcatgc aaacgcttga tgtatttgct gcttcgtccg cgaggtttcc gtatttttac 3240 cgaccatcga aatttgcagt atgtgttcga cccgctcgcg gtcaacagtt ctctcggccg 3300 ccatcaagtc gaccgtttgc aaagatgggc aatgactctc actgcctttc gctacgttat 3360 cgagcatgta cgcggggatg aaaatgtgtg ggctgatctt ttgtctcgat ggggtgcaag 3420 cgcaccgaca aaggtagcct ccgctcgaat gagtactttg ctggtggtga accgagtttc 3480 gccgctgaca gagccggatt tcgcttggcc tagtgagctc gacatcgtga ctgaacaacg 3540 tcagcagctt gcagctcgag atccttccga tgccctacct ctgtgtcgct ggaacgacga 3600 gatgggttta ttcgtgacgg agtcgggccg tatttggatc cccgaacagt gtgtcgatct 3660 ccaacaacga ctgtgtgtgc tggcacatgc cggccttagt gggcatcgtg gcgagggagt 3720 gacccagcag atgctggctg aaaagttcga ctggcctact ctaaaagccg atgtgaaggc 3780 gtttgtgcgt agttgtctcc actgcatggt cgtgggtgag cgcgttgttc ctcgaccttt 3840 tggccaagct ctccacgctt ccgctcccaa tgaggttctg cactttgatt ttctgtcact 3900 tccggcaagt tcgactggtg aaccatacgt gctggtgctg aaggacgaca tgagtgggta 3960 ctgtgaatta gttacctgcg aaagtgccac ggctgaggca gcatgctcgg cattactgga 4020 ttggttcaag cgctttggac ctgttacgca gtggatatcg gatcgtggga ctcatttcaa 4080 gaacaccatt ctcgagcagg tgcggaagtt ctatggtgga tcgcatcatt ttacaacagc 4140 atactgtccg tggtctaacg ggacagtgga ggtggtaaac agactgctac tacggtgcat 4200 gcgggcgatg ctgagcgagc tgaaactgca tgcggctgaa tggcctacca ttctcccatt 4260 ggtgcagtct gccctcaacc aaatgccagc cgaccggctt ggtggagtgg ctccagttac 4320 agcgtttact gcgctacccg cttcgcctcc cattcatgcc atcctgcacc cgcagacaca 4380 agtcctcttt gacgtggagg ccgtgtacga gaagcaacgc cagcatctag cggacattcg 4440 tgtcgcgcta gacaacatgc atcgagcagt gaccagtgtt gcagagacga agcgagagca 4500 ggcaagggca cgacgagctg cacaatcggg cgtgcacatg gcaaactttg aaattggaga 4560 tttcgttctt gtggctcagg tgattggccg cgtgaacaag ttggccgtgc actggcgagg 4620 tccgcggcgc atcgtccgcg ctctcacaga ctacattttc gaggtgcagg atttgagccc 4680 gccgttccaa gtctccacgc accatgcatc acgtttacag ctgtatgcag acagtcgtcg 4740 cgacgtcacg gaggatttga tagctcatgc tatgcatgcg gacggtggtc atcttgttgc 4800 caaattcctc aaatgccgtc tcggtgctga gtctcacgtg tgggagatcg aagtcgagtg 4860 ggtcgggctt gatccgctcg aagcatcgtg ggaaccagcg gcaatcatgt tcgaagacgt 4920 tccccgactg gtggaacagt tcgtcaactc gcagcctgat gactcagcag ctcatgctat 4980 gtggtcgtca cttgtcgacg aacgtccgcg cacacccacg aagaaaggca aaggagcctc 5040 caagaagaga gggtaa 5056 // ID R2I-3_PI repbase; DNA; PLN; 7103 BP. XX AC . XX DT 31-JUL-2009 (Rel. 14.07, Created) DT 04-AUG-2009 (Rel. 14.07, Last updated, Version 1) XX DE A family of NeSL non-LTR retrotransposons - consensus. XX KW NeSL; Non-LTR Retrotransposon; Transposable Element; R2I-3_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7103 RA Kapitonov V.V. and Jurka J.; RT "NeSL non-LTR retrotransposons from the Phytophthora infestans RT genome."; RL Repbase Reports 9(7), 1526-1526 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 57..6005 FT /product="R2I-3_PI_1p" FT /note="RNase H, RT, restriction enzyme-like FT nuclease domains." FT /translation="MPRSLASEPVHSSASRLPSQAPPTSRSGAAHTPPPSL FT QARPLASADAGLAATALASPQDPPYDVAPPGRAAGRLPDSVSPGATLSAAT FT ARALAVRHWPLELDSDSSDDEDAQDPHAAAPGPPADVASVLAPPGRAGSML FT ADPAALAAGLARAPPPPSAPQDPSPALPAGPAGQNPRAAAPARVEVHTVVA FT PPGRAGGMLPDPGLVDSSPAAATAATPAPVAATATTARVAVEHHAHAEPNQ FT EHLPMARVLVEPMQVDECSSCDRSTLTADDGSGDDVAAPSSMLSNDVAAPM FT DVDSGTSCPPTLQQPLQRPRALHVGSKRRRLNADDGEEAHQLQEEEEAGIH FT APALRLSAASAQPASVLAVYTHNASRFDCTLCAYTAGSFASLKTHRNSRHR FT RTAFLDRFSAGCACGVPFASRLAAARHAQACASLSSAPLAEASSAAGASSH FT TVDGADSTVSAAGHAEPDLPRHNATELTASPPLVSSTDVEVQATETEATEN FT RWGTPLPRVLVASRIAGRLAQVPPPRWGPPLPRTTIAGRIATRLAATPAPR FT WSPPLPRSLVASRIAGRLLPALPDAPACEDEAKDSDEMDWEASEPHVEAPG FT PVDEETIDDADGEWLLRFDGACRANPGPGGAGAALFKPSGPVVWTCSHYDP FT STTATNNTAEYTALLLGARAAADHGVTKLRVEGDSTLVIQQVRGIFATRST FT RLRALRNKVKLELARVGSFSLHHIDRQANGHADRLANAGLDRRRTQLECSV FT HPDGRGCTNTSVATAAPTASAAPSTPTRPPATTAAPFHSDQGHIDEDDERR FT ADIDDGEIYAPMTLGPDEVPARRPRLRLRQLSDEELEAAGAIVERLSASLS FT AKITDAEDWGTAEGYITALPHLLYDKLLPYSRTAPRHQRPPRPSRNQQDHP FT QPRRDQPQRNVDEQQHAESQQGEDQRQQQPPTRRRRRRGKRRGRRQRRHPR FT QPGQSTRASQQSRQRRPRPPRVTRHHREHRIDEALDELHTLERARPQDRSA FT IDKARRRVGRVRGAINQHLLRHRFDTDEKACVADILEKAHAARAARTAQAA FT GAATSTGGAATAPTQQAATSALGDADDGTCPILADELWQYFTGTNTPRWEF FT NPATPVGEAFRTAMARLPPATRLRELLTEAPTADEIETQLQHVRGSSSPGL FT DGIGYDVYQRFAQQLLPVLTASFKRCWTAKMVPQSWQVGVVRLLYKKGAHD FT DPANWRPICLQQAIYKLYTGVLARRLVRWLDVNDRHAPGQKGFRAVNGCGE FT HNFLAATLIDQARRKRRSLYEVWYDFRNAFGSVPFQLLWDSLQRLGAPADF FT IDMCKGLYHQAAFVIGNAADGPTAAIRQQVGVFQGCPLSPQLFNVAISPLL FT FALRRLPETGVQLSGDDRVGVSAYADDLKTFSSTKAGATKQHELVAAFLAW FT TGMKANAAKCSSMGVRRNSNGATEADNLDLALDGTPIPSMTHMQSYTYLGI FT GDGFDHVHRRIELAPKLKTLKQDTTALLESGLAPWQVVKAVKVYLYPRVEY FT ALRHLRPEDQLLESFDLHLRAGLRHLLRLPKNANNDFFYSPVSRGGLGLLP FT LVELHAALQIAHGWQMLNSTDPATRRIAREQLHQIADARHRLDKAHWKERG FT DELCQLFLNLDLGTSAHAPPKRRNCDIGSLWVDVRKNLQAFGLKLETAPAD FT AESGTPALPLQLRVPHHEKWLTHRDVLRHVKQHLKNKHWRAWCAFQDQGRT FT ARAHGGVGSSFITRPRGMWESDYRFAVAARLNMVDTSATLARRRLRAHDRC FT RYPGCRWKESLEHVLNHCPGTMDAVRGRHDGVLREIEHALRAPSGARRELR FT VNQTVPGLPGPALRPDIQVYNHDQRTVAVVDLAVAFDRQDRDDPETSGLAK FT AAAEKKAKYTGIQRHLERQGWKVHLSALVYGSLGSVAPNNYKVYTEHLGLL FT KRDAKRLDRTLSVACIQSSRRIWNLHCAKHRARQHQTPSQSRGRRVTETGG FT APSRTDRR" XX SQ Sequence 7103 BP; 1360 A; 2541 C; 2143 G; 1058 T; 1 other; gtacggccga atccctggcc tctcagcctg tacgcggggc tatacttggt ctaagtatgc 60 cccggtcgct ggcctctgag cccgtacaca gctcggcctc gcggctgcct tcccaggcgc 120 cgccgacttc gcgctctggc gcggcccaca cgccgccgcc gagcctccaa gcgcgcccgt 180 tggcttccgc agacgcaggg ctcgcggcga cggccctcgc cagcccccaa gaccccccct 240 acgatgtggc accacccggc agggcggccg gcaggctgcc cgactcggta tcgccgggtg 300 ctacactctc agccgccaca gctcgggcct tggcggtccg ccattggccc ttggagctcg 360 acagcgacag cagcgacgac gaggacgctc aagaccccca cgccgccgcc ccaggacccc 420 ccgcagacgt cgcgagtgtg cttgccccac ccggcagggc aggcagcatg ctcgccgacc 480 cagcagcgct ggcagccggt ctggctcgcg ctccgccgcc cccatcggca ccccaggacc 540 caagccccgc cctccctgct ggccccgccg gccagaaccc tcgcgccgcc gccccagccc 600 gtgttgaagt ccacacagtc gtggcaccac ccggcagggc gggcggcatg ctgcccgacc 660 cggggttggt tgactcaagc ccagcagcgg ctaccgcagc tactccagct ccggtagctg 720 ctactgctac aactgctcgc gtcgccgtgg agcaccacgc gcacgctgag ccgaaccaag 780 aacatctacc gatggctcgc gtgctcgtgg agcccatgca ggtcgacgag tgcagcagct 840 gcgaccgcag cactttgaca gccgacgacg ggagcggtga cgacgttgca gccccaagct 900 ccatgctcag caacgacgtc gccgccccca tggacgttga ctccggcacc agttgccctc 960 caacgttgca gcagccgctc cagcgaccgc gtgcgctgca cgtaggcagc aagcgccgcc 1020 gactcaacgc agatgacggt gaagaagctc accagctgca agaagaggag gaggctggca 1080 ttcatgcccc agcgctcagg ctatccgcgg ccagcgctca accggcctcc gtccttgccg 1140 tgtacacgca caacgcgtcg cggttcgact gcacgctgtg cgcgtacacg gccggcagct 1200 tcgcatcact gaagacgcac aggaactctc ggcaccgccg caccgcattc ctcgaccgat 1260 tctcggcggg ttgcgcgtgt ggcgtgccct tcgcctcgag gctggctgca gcaagacacg 1320 cgcaagcgtg cgccagcctc tcgagcgcac cattggccga ggcttcgtcg gcagcaggag 1380 catcaagcca cactgtcgac ggagccgact ccaccgtctc agccgcgggt cacgctgagc 1440 ccgacctgcc ccgccacaac gccacggagc tcacagcgtc ccccccgctg gtgagctcca 1500 ccgatgttga agtgcaggca acagagaccg aggccaccga gaaccgctgg ggcactccac 1560 ttccgcgcgt gctggtcgcg tctaggatcg ccgggcgcct cgctcaggtg ccacccccac 1620 gctggggccc cccgctaccg cgcaccacca tcgcgggccg cattgcgacg aggctcgccg 1680 ccacacctgc cccccgctgg agcccaccgc ttccacgaag cctggttgcg tcacgcatcg 1740 ccggccgcct gctacccgct ctgccagacg cgcctgcatg cgaggacgag gccaaggaca 1800 gcgacgaaat ggactgggag gcgagcgagc cgcacgtcga agcgccaggg ccggtcgacg 1860 aggagaccat cgacgacgcc gacggcgagt ggctcctgcg ctttgacggt gcctgccgtg 1920 ccaacccagg cccaggcggc gccggcgcag ctctcttcaa gccaagcggt cccgtagtgt 1980 ggacttgttc ccactacgac ccgagcacca cggcaacgaa caacacagca gagtacactg 2040 cgttgcttct cggggccagg gccgccgccg accacggcgt cacgaagctg cgcgtcgagg 2100 gcgacagcac gctggtcatc cagcaagtgc ggggcatctt cgcgacgaga agcacgcggc 2160 tccgagcact gcgcaacaag gtcaagctcg agctcgcgcg cgtggggagc ttctcgctcc 2220 accacatcga ccggcaggcg aacggtcacg ccgaccgcct tgccaacgcc ggcctcgacc 2280 gacgccgcac ccagctcgag tgcagtgtgc accccgatgg taggggctgc accaacacct 2340 ccgtagcgac cgcagcgcct acagcttctg cagcaccctc gaccccaacc cggcctcctg 2400 caactacggc cgctccgttt cacagcgacc aaggccacat cgacgaggac gacgaacgtc 2460 gtgccgacat cgacgacggt gaaatctacg ccccaatgac gctcgggcca gacgaagtgc 2520 ctgctcggcg accgcgcctc cgactccgcc aactcagcga cgaagaactc gaggccgctg 2580 gtgccatcgt ggaaaggctc agcgcatcgt tgtcagccaa gatcaccgac gcagaagact 2640 gggggacggc agaaggctac attacggccc tgcctcacct gctgtacgac aagctcctac 2700 cgtactcgcg gacagcgccc cgtcatcagc ggccaccccg gccatcgcgc aaccagcaag 2760 accacccgca gccgcgacgc gaccaaccgc agcgcaacgt ggacgaacag cagcatgcgg 2820 agtcacagca gggtgaagac cagcgacagc agcagccgcc gacgcgccgc cgacgtcggc 2880 gagggaagcg tagaggccgc cgacagcgac gacaccctcg ccagccagga cagagtacca 2940 gagcctccca gcaaagccgg cagcgccgac cccgaccccc gcgcgttacc cgccaccacc 3000 gcgagcaccg catcgacgag gcgttggatg agctccatac actggagcgg gcgcggccac 3060 aggaccgatc ggcgattgac aaggcgagac ggcgcgtcgg acgtgtccgc ggggccatca 3120 accaacacct gctgcgccac cggtttgaca ccgacgagaa ggcgtgcgtg gcggacatct 3180 tggagaaagc gcacgcggcg cgagcggcac gtacggcaca ggcggcgggc gcagcaacgt 3240 ctacaggagg agcagcgaca gcaccaacac agcaagcagc cacgtcagcc cttggtgatg 3300 ccgacgacgg aacctgcccc atcctggccg acgagctctg gcagtacttc accggcacca 3360 acacgccgcg ctgggagttc aaccccgcga cacccgtcgg cgaggcgttc cgtacggcga 3420 tggcaaggct tcctccggcg acgaggctcc gcgaactgct gacagaagcc ccgactgcgg 3480 acgaaatcga gacccagcta cagcacgtgc ggggatcctc gagcccagga ctcgatggca 3540 tcggctacga cgtctaccag cgcttcgcac agcaactgct cccggtgctc accgcttcgt 3600 tcaagcgatg ctggacagcc aagatggtgc cacagagctg gcaggtgggg gtcgtgcgac 3660 tgctgtacaa gaagggcgcg catgacgacc cggcaaactg gcggcccatt tgcctccagc 3720 aagccatcta caagctttac acaggtgtac ttgctcggcg actcgtgcgg tggctggacg 3780 tgaacgacag gcacgcacca ggacagaagg ggttcagggc agtgaacggc tgcggggagc 3840 acaacttcct cgcagccacg ctcatcgacc aagcacgtcg caagcgccga tccctatacg 3900 aggtatggta cgacttcagg aacgccttcg gcagcgtgcc attccagctg ctgtgggact 3960 cgctgcagcg cctcggcgct cccgcagact tcatcgacat gtgcaagggg ctgtaccacc 4020 aggccgcctt cgtcatcggg aacgccgccg acggaccgac agcagcaatc cggcagcagg 4080 ttggcgtctt ccaagggtgc ccactgagcc cccagctctt caacgtcgcg atcagcccgc 4140 tgctcttcgc gctccgcagg ctgccggaga ccggggtgca gctgtccggc gacgatcgtg 4200 ttggagtttc ggcttatgcg gacgacctca agaccttcag cagcaccaag gcgggcgcca 4260 ccaagcaaca cgagctcgtc gccgcgttcc tggcttggac tggcatgaaa gccaacgcag 4320 ccaagtgcag cagcatgggc gtacggcgca acagcaacgg cgcgacagag gcggacaatc 4380 tggacctcgc gctcgacggc actccgatcc ccagcatgac tcacatgcaa tcgtacacct 4440 acctggggat cggagacggt ttcgaccatg tgcaccgccg catcgagctc gcgcccaagc 4500 tgaagacgct caagcaggac acgacggcgc tactcgagtc cggcctcgcg ccttggcagg 4560 tggtgaaggc cgtgaaggtt tacctttacc ctcgtgtcga gtacgcgctt cggcatctga 4620 gacccgaaga ccagctgctg gagagcttcg accttcacct ccgcgccggc cttcgccacc 4680 tgctccgcct gcccaagaac gccaacaacg acttcttcta ctcgccggtc tcgcgcggtg 4740 gcttgggact cctgccgctg gtggagctgc acgcggcgct acaaatcgcg cacgggtggc 4800 agatgcttaa ctcgacggac ccagccaccc gacgcatcgc gcgcgagcag ctccaccaga 4860 ttgcggatgc aaggcaccgc cttgacaagg cacactggaa agagcgtggc gatgagctct 4920 gccagctctt ccttaacttg gacctcggga cgtcggccca cgcaccgccc aaacgccgca 4980 actgcgacat cggctcgctg tgggtcgacg tccgcaagaa cctgcaggcc tttgggctca 5040 agctcgagac cgccccggcc gacgctgagt ccggcacacc cgccctgccg ctgcagcttc 5100 gcgtgccaca ccacgagaag tggttgacgc accgcgacgt gctgcggcac gtgaagcagc 5160 acctgaagaa caaacattgg cgggcgtggt gtgccttcca agaccaaggc aggacggcac 5220 gggcacacgg tggggtcggc agcagcttca tcacccgccc ccgtggcatg tgggagagcg 5280 actaccgctt tgcggtggcc gctcgcctca atatggtgga cacgagtgcc actctcgcgc 5340 gccgacgcct ccgcgcccat gaccgctgcc gctacccggg ctgccgctgg aaggagtcac 5400 tggagcacgt gctcaaccac tgtccgggca cgatggacgc cgtgcgtggc cgccacgacg 5460 gtgtgctccg agagattgag cacgcgctcc gtgcaccatc gggagcacgc agagagctgc 5520 gcgtgaacca gacggttccg ggcctacccg gccccgcact acgccccgac atccaggtct 5580 acaaccacga ccaacgcacg gtcgcagtgg tggacctggc ggtggccttc gacaggcagg 5640 accgcgacga cccagagacc tcgggcctgg ccaaagccgc ggcggagaag aaggccaagt 5700 acactggcat ccagcgacac ctcgagcgcc aagggtggaa ggtccacctt tccgcgctcg 5760 tctacgggtc actgggctcg gtggccccca acaactacaa agtctacacg gagcacctgg 5820 ggctcctcaa gcgtgacgcc aagcggctgg accggacgct gtcggtcgcg tgcatccagt 5880 ccagccgccg catctggaac ctgcactgcg ccaagcatcg ggcgcggcag caccagacgc 5940 catcccagtc aaggggcagg cgggtgacgg agaccggggg ggctccgtcg cgcaccgatc 6000 gccgctagac ggcaaagttc tggcccgcgt aggccgaaag ggccccgccc aggtagggta 6060 acgccctcgg gaaaaccatt ctggtgtttg gctgtttttc aacagtcgaa cttcaactcg 6120 gagcatatca gatacactta ctcacacatt tagatatcag atagggaacc tttattaggg 6180 agataacggg tacaccggat ggtaaatata caaaaccttc tctgttctaa tcagtgtgaa 6240 aactggtttt cgccttttgg cggacttttt cactcgcatt tttgggcaat cgtctgcggc 6300 tagcttgcta gcggcggacg agcggtctcc gggggcgttc acctttcccc cgcgaggcca 6360 actacaccga tcttctctac acttttctaa ttcgcctccg tcttcggtct tcggttgtcg 6420 ggcttttttc tttttgacca atcagagcgc gccatgcgac tcttctggcc aatcagagac 6480 cgggccctgt cctcggacag cgaggcctcc acggccagcc aatcaagtct cggcagcgac 6540 gcgtctttct atagcgcagc tgacgaggcc gatctggcgg cccccgattg gtccgacttt 6600 cggccaatca gcgacgacga gggggcaggg gtttacactt ttgcccccgt ttcggcttca 6660 acttcaggcc aaaatggcga tttggaccct ccacgcgccg tgccactgct cggcaccggc 6720 ggcgattcag cgggtgcaac ttcgggcacg tgtgcaacac atgcagcgcc cattgcacgc 6780 caagcggcat cgcgggacga cgcctcggcc gctcaagcgc agccccgccc ttccagcacg 6840 acctcgcgcc gtttggcgga tcgccatcaa gacgtgcgag agccaggcgg ggtcgggcaa 6900 aatatactta ctctaagtat gcccgaatcc ctgccctctc aggctgtacg cggccccata 6960 cttgacctaa gtatgggagg atccctggcc tctcaggctg tacgcgrgga ccaagtacag 7020 ccgaatccct ggcctctcag cctgtacgcg gggctatact tggtctaagt atgccccggt 7080 cgctggcctc tgagcccgta cgc 7103 // ID Gypsy-9_PSo-I repbase; DNA; PLN; 6582 BP. XX AC AAQY01000324; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PSo_; KW Gypsy-9_PSo-LTR; Gypsy-9_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6582 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000324; Positions 63156 69737. XX CC Positions [3817-4074] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 1687..4074 FT /product="Gypsy-9_PSo-I_1p" FT /translation="MFTMGVVDESGIQTKYITRKKLRKFLRIKTKTSDEPD FT FMLVLSNETIKQVARSLQRRDQPDNVGRAKAQRYLETDWDTFRENPAFNLL FT MEYKDNVFRPELPEGLPEKRDIEHRIDVKDPNMAMYRQQWRQSPEQQREIV FT RWVEDMVKKKLIRPSISPHAAPTFCVRKPVGWRIVHDYRYLNSNTVRQSIP FT MTRKEDILDTMSGAYWFSTMDLMSAYYQVRMREEDIKFTAFQAPNGLWEYL FT VLPMGVCNAPATMHRLTSKLFRDLKNTKSFYDDIYVFTKSPKIEDHLDALR FT KTLDILRDNKLYVKLSKCVFCSDEMPCLGDFVGRNGVRMDPDKVQTIEDWP FT VPRTQEELHSFLGLTGYVQRFCPEYASLTASMFALLKKKNKRNAKIHLSDE FT QLKNFMEFKRRLCNPPVLHLPDFSSPMHLRTDASKFAVGGVLFQVVDGVER FT PIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPPIVETDHKSL FT EGLFTQKMANRRLARWYDILAEYQPTFSYLPGAKNGIADALSRRLDLQPET FT KFFHDLRVTSFDSTSFSLAISEVTGDSELITRIKKAYKKDRDDQAILTAIK FT RRKSDSKPKREHQQHKKYRCYSEANGLLWYQTPADDAPRIVVPNDVKLRQT FT IISECHDTNCGGHPGAERTYLTLARHWYWSKMLKSIQKFVADCEPCRRNKP FT RLTKPPGLLEPLSIPDERWRSISMDFITDLPRTERGVDSIWVVVDRLTKRC FT HFVPTTKKVNAEGVARLFIDNIWKLHGMPTNIVSDRDRKFVSAFW" XX SQ Sequence 6582 BP; 1670 A; 1797 C; 1837 G; 1278 T; 0 other; cttcttcctg ttaaactggt agcacttgtt ggtcccagca acctgactac aagaagccca 60 tgccgacgaa cgcccagcta cgagccgaga tcgaccggct gaatcaagcg atggcagagc 120 gcacgcgagt gcccaccaat ctgcccaagt tcaccggcaa gcggggggaa gacgttcgcg 180 aagggctgtt ccggatcgag aaggcctgtc gcatcaacgg aatccaaatc gaagacgcga 240 gcgcgcgtct gccgggtatc gccgggtcgg cgatggaaaa gccggcctca ggatggttcc 300 tgcactggtc atcgacgacg agaagtaagg agcacacgtg ggggattttc cgtgagcatg 360 tgctccaaca cttcgaagct tcgaactacc aggccgtctt gcgagaaaag cagcagcgac 420 tcaagcaaac ggcggacatc gagacctcca acggcgagta ctctgctctt atctcccgag 480 ttgagggcat gagtgtactt gaccaggtac taagctacgc aaacggtctc aagcctcgta 540 cccgtagcta cgtcaagctc gagaacccag agacgctgag cgcggctatg gatctggcga 600 tcaagtacga agttacgcac tttgtggacg acgtgcgcga ccgccagtcc cgccaagaca 660 agacgaagat cttcgctgat caagctccca agcaagacaa gccattcaaa gggaaacctt 720 tccgcggcaa gggacggttc aagccgaggt ctgactccaa gcgtactgaa ggccgcacct 780 gctatcactg caagaagcct gaccacatca aggccaactg cttcctctgg aagaaggagc 840 aagagaagca gggaaacgag caaccacgtc ggtgaatgag ggttctggcg tgggcgagag 900 cgtaaccggg acaccaaaga ttgagaatat cagcttgaac gttctgtgcg aaaaccctct 960 ggtctacaag tcacgtccac tgttctccgt aacaggtgaa atcagtgttg gtgacaagtg 1020 tctcgcgaca cgaagcatgt tgttggactg tggagctacc acgatctacg tatccgagcg 1080 ttgggtcgag gagcaccagc ttcagacaac caagttcagc gacaagaaca ttcgtgtcaa 1140 gctgggagac aaccaaattg tcgaggcgga gcttgaagtt ctgctgatag agattctggt 1200 ctcgaggctg gacgacgcct acaagtgtgt ggcagtcgtc tacccgattc caggcgaatt 1260 cgattgcatt cttggaatac cattcttcga agacgtgcaa ccacatattg actacgaatc 1320 gaaggaacga gaacgaggac tctgcactgg aagcgaacag ggaagacctg tgagccgatc 1380 gaggaaggcg gaccggtgat tacctccggg cttcggagat ctgtcgaggc gaaaggcctg 1440 tcggcgaaaa gacccgattc ctgtcgaggt gccgcgctgg aaacggatgt gaagctcacg 1500 gttgaagctg ttggtgacgc agtacagaag aaatccccaa gtgttgtccg cggacgacat 1560 gataacgcgc aagctggcaa gagttcagct ggagacgacg acgttgcgac gtctgagcgc 1620 gagagtactg tagtcgaggc tgatggaagc agcagtacca ggggtggaga caacgccgtg 1680 gagaagatgt tcacgatggg agttgtcgac gagagtggta tacagaccaa atacatcacg 1740 cgcaagaagt tgcggaagtt cctgagaatc aagaccaaga cgagcgacga gcctgacttc 1800 atgttggtgc tatcgaacga gacgatcaag caagttgcac gttcactgca acgccgagat 1860 cagcccgaca acgttgggag agcgaaagca caacgctatc tggagacaga ctgggacacc 1920 ttccgagaga atccagcttt caatcttctc atggagtata aggacaacgt gtttcgtcca 1980 gaactacccg aaggtttacc agagaagcgt gacattgaac accggatcga tgtgaaggat 2040 ccaaatatgg cgatgtacag gcagcagtgg cgacagtcgc cggagcagca gcgtgaaatc 2100 gtgcgctggg tcgaagacat ggtgaagaag aagctcattc gaccaagcat cagtccccac 2160 gcagccccaa cattctgtgt ccggaaacca gttggctgga gaattgttca cgactaccgg 2220 tacttgaatt cgaacaccgt gcgtcaaagt atcccgatga cgaggaagga agacatcctt 2280 gacaccatgt ccggtgcgta ctggttctcc acgatggacc tgatgtccgc gtactaccaa 2340 gtgcgcatgc gggaagaaga catcaagttt accgcattcc aagcgccgaa cggtctctgg 2400 gagtatctcg ttcttccaat gggagtttgc aacgcgccag caacgatgca cagattgaca 2460 tcgaagctct ttcgagactt gaagaacacg aagtcgttct acgatgacat ctatgttttc 2520 accaagtcac cgaagattga ggaccatctg gacgcactgc ggaaaacact tgacatcttg 2580 cgtgataaca agttgtacgt caagctgtcc aagtgtgtct tctgctccga cgagatgccg 2640 tgtctcggag atttcgttgg gcgaaatgga gttcggatgg atccagacaa ggtgcagacc 2700 atcgaggact ggcctgtacc acggacgcaa gaagagcttc acagcttcct tggcttgaca 2760 ggttacgtcc agcgattctg tccagagtac gcatctctga cagcctccat gtttgcgctc 2820 ttgaagaaga agaacaagcg gaacgccaag attcatctca gcgacgagca gctgaagaac 2880 ttcatggagt tcaagcggcg actgtgcaac ccgccagtat tgcacttgcc ggatttcagc 2940 agccccatgc atctgcgtac cgacgcaagc aagtttgctg tcggtggagt cctttttcaa 3000 gtggtggacg gagttgagcg cccgatagcg tacacaagcc ggaagatgaa gtcggcggag 3060 ctcaactatc cgactcagca gcaggaacta ctagcgatcg ttcatgcgct ggcagcgttt 3120 cggatctact gcctggacaa accacccatc gtcgagacgg atcacaaaag tctcgaagga 3180 ctgttcaccc agaagatggc caaccgacga ctcgctcgct ggtacgacat ccttgcggaa 3240 taccagccga cgttctcgta ccttcccggt gcgaagaatg gcatcgcaga cgcgttaagt 3300 cgaaggttag acttacaacc ggagacgaag ttcttccacg acttacgggt gaccagcttc 3360 gacagcacat ccttcagcct cgcgatcagc gaagtaacgg gtgactcgga gctgattacg 3420 cgcatcaaga aagcgtacaa gaaagatcgt gatgaccaag caatcttgac agcaatcaag 3480 cgacgcaaat ccgactcaaa accaaagcgc gaacaccagc agcacaagaa ataccgctgc 3540 tactccgaag cgaacgggtt actgtggtat caaacgcctg cagatgacgc tccacggatt 3600 gtcgtgccca acgatgtgaa gttgcgacag acaattatca gcgagtgtca cgacaccaac 3660 tgcggaggcc atcccggtgc ggaacgtacg tacttgacac tggcgcgcca ttggtactgg 3720 tcaaagatgt tgaagtccat ccagaagttt gtcgccgact gcgagccttg tcggaggaac 3780 aagccgcggt tgacgaaacc tcctggattg ctcgagccac tcagtattcc agacgagcgt 3840 tggagatcca tctccatgga cttcatcact gatctgccgc gaacggagcg gggcgtcgac 3900 tctatctggg tcgtcgtcga tcggttgacc aagcggtgtc atttcgtgcc aaccaccaag 3960 aaggtgaacg ccgaaggtgt tgctcgactc ttcatcgaca acatctggaa gttacacggc 4020 atgccgacga atatcgtctc cgaccgcgac aggaagttcg tgtccgcctt ctggtagcat 4080 gtcttcaagt ccatcgggac gaagctaaga atgaccgttg cacatcgcgc tcaaggtgac 4140 ggacaaacgg agcgcatgaa ccgaaccttg gaaaagtatc ttcggttgat cgtcggtcca 4200 cttcaagatg attgggacgt ccatctcacc aacgctgagt tcgctgtcaa ctcaactgtc 4260 aactccagca cgaagcttgc gccgttcgaa gccgatctgg gctacatttc gctgaatcca 4320 cttcaacttg catccgagca acttgagagt gtccccaaga gtcgccgcgg agcagagttt 4380 cacgagcgac aggcggcgat tctcttacgc tgtcgcgagg cgttagctca ggcccaagaa 4440 tggatgcgcg acgtctacga ccgaaaccgt gttgagcaga tcttcgaagt tggtgacagg 4500 gtatacttga gcacgcagaa tctgaacccg aagcaccccg gcttgcccaa ctccaccaag 4560 ttcggaccca agtggattgg accgtacacc gtggtgcgga agattcataa ccacgcgtac 4620 gagctcaaca tccaggctag caacaaactg catcccgtct tcaacactgc gtcattgaag 4680 ccgtacaagg agctgactcg cttgtcgagg ccaagcgacg taatcttagc ggacggcagc 4740 attggccaga tcgtcaaggc attacgtgga aagcgaacgc gaaaacggcg gatccaatat 4800 cttgtggagt gggtgggcga ggagaaacaa acctgggaac cagtggagaa cttgtcgcaa 4860 gtcccagatc tcatcgcgga atttgaatct gcaaggcgaa agaagcgtcg aaaacggtga 4920 agcaggatca gctgaagggg ggctcaaagg cctacatgta ttcccgtatt acatcccctc 4980 ttgttgcaga acctgctgct tcatgcgctt ctcccgcttt ttctgcgtct tcgacttgcg 5040 cttgccgtgg cgacacttgt atcctggttg cagctccact tgcgccatcc atttcacgtg 5100 ctgaatccac tactggtaac tcagaggaag aacgtccacc ggcgggttct tgcgggcatt 5160 gaaattgtca agagccagaa gttgcttctc cggacgacgg ttaaccacga caaagcagtg 5220 cccgacatca ttgcggccag cgctgacgac gtaaacaccg ggtgcttgtt tgcggcaaac 5280 accttggagc gtcgtgatgt tggcacttga ctctggaagc gcgtttcgga gaaggacgtc 5340 gtagttcagt ggcatactct tgcgctgcag aaccttgaag aactccgtca cgtcgtcgcg 5400 agacacaccg tactggatgg cttcaggtcg cgtgtcttca tacgcatccc acatctccat 5460 tgtgactaga ttcggctgtc cgagatagta caaggccgag cggaaagcat ccatgaaaca 5520 agtaccagcc tccgacgcgg aatcacgctc cgaataccaa taacagaagg tgcgcttgtc 5580 tcccgattcc ttccaagcgt ccaccatcct catcatgtag cgcgtcgacg gtttgtcgag 5640 ctgctccatc cagacccagc ttagctgtag cggactgcct tcccattcca ccaagtagca 5700 acggtgcgga gccttgcccc tgacatccaa ggcacggacg atgccaacct cagtgttgta 5760 atcccaaggc ttcttcgggt cgtatggttc ttgcggttgt tcgacgggtg ctttttgggc 5820 gccggaggaa gcggcatcgg atgccacgtc gaagtctcgt caccgcgacg caagcgcgag 5880 cggtcaacct gaggcaggcc ttcatcgtcg tcactatcgt cgaaaagccc cgattcatct 5940 tcaggcgagg actcaaaggt cgccccaagc acaggctcag cagctatcgc ctcctcgaca 6000 gacaaccctt ccacatcgag catgaagatc aactcctgga ggcgcgtagg tggagaaaaa 6060 ccaccagccg aagcaacaac ctcacgcggc gctggcgacg caggcggcgg cgccggggac 6120 gccgagcccg aatctggaga gccaagaccg ggagagcgac tggtgagctc taattcttcc 6180 cacacatgca ccatttcttc gtcaagaccg gagtcagtat cgctgtcttc accagcagcg 6240 gccacaacat cgacaatctg cgcgagcgcg gcggcgcatt cagagtctgc cggcgcggcc 6300 ggcagaggcg acacagacgg cggagcctca acatcatgat cagccgtcgc tggaggcgag 6360 gcagaacgcg cggaagcagg agactgcatt ccggcagcag tagaaaccgc tagcgacaca 6420 actatcagcc caaggaacca atccaagcct ccaacaacca ggccgaggcg aaggagaagc 6480 gaggtcggac taattcctca ggcgacagcc ggaagcgtcg cggttctctg tctttttcgg 6540 gaatgacaag tcggaagggc gcgcagccag agaaggggtg ac 6582 // ID Gypsy-45_PIT-LTR repbase; DNA; PLN; 220 BP. XX AC AATU01003518; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-45_PIT_; KW Gypsy-45_PIT-I; Gypsy-45_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-220 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003518; Positions 46402 46183. XX SQ Sequence 220 BP; 74 A; 54 C; 48 G; 44 T; 0 other; tgtaggctga agcacagcct gtattacatc ttcgaggcta tctggtatac agaagataac 60 cacaaccatg gtgaggactt gaacctggcg ccgagcgctc agggccagtc aatacgtacg 120 gcatagcact agaagacaag aaaaaacaat aggtcagttc gtataaactc acaattgcat 180 ttacctcgca agcaacaagc attcagcgga acttaccaca 220 // ID Gypsy-5N_PPa-LTR repbase; DNA; PLN; 2804 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Gypsy-5N_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-2804 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1038-1038 (2010). XX DR [1] (Consensus) XX SQ Sequence 2804 BP; 868 A; 427 C; 417 G; 1092 T; 0 other; tgtgagcata attaaaagct ccaatggtta gttacaattc tttttgtaat ttttaacata 60 tttttactaa ttttaatgct aatataacta attaatagat ccaaattagt ttttttagtt 120 aattatgact ttgatcatat ctttaggttg ttaattagat ggatacttct aattagtaga 180 ttgattgact attttaaaac tcaaaagaaa aaatagtaaa tttagaaggt ctatgatttt 240 tttttcttga attactttaa atcttttttt tagtgataaa actacaattt tagtagaatt 300 tctcttctaa ttcttaggaa ttatatctta aattaatcca caatcttaat tttcaatcca 360 aaagctaatt tctaatttga ctatggttag aaagtccctt aaacctaatt gctctatctt 420 cttaattaat tttgaagatt tttaagctta aattttattt tgtaatttaa ttggattaaa 480 aatataaagt ctaattgtta aattaatgat gatcttaaaa agatggagac aagctaaatt 540 ttttggtgga gtttcctctc atagtgattt taatcactac ttgaagttga aaaaaagaaa 600 aattggaaaa aatcacaagc tattaattca aggccaattt gcaattaggt tttggatttg 660 ccaagagttc atgcttaagg gagtttaaat tgaagaatgg tgattatgaa ggctttgatg 720 gcaagaaccc ttgctgattt ccaagtaggc taattagaat tagaattgta gttgaaattt 780 acaactaaat tagcaaatta attggttctt atgatttaga actcagattt gggcttgtga 840 atagttgatc ttaggataaa aatatgtttt agagacattg gtggtgttag tttcaccaaa 900 aaggtgttag tttttgagtt ctaggcattt ccagccttga aatcggggtt gggctgagag 960 ttattgagga cccttgatct tggttaggga ttttccgatt ttgatggtgg agatgtgtcc 1020 gccacttttg ggcctcctcc cacctggtta agagggcttg ggtggccgag ctccctctct 1080 ctctccatct tcttgtggcg aagccatggc aaaatgtccc cccatcttgt gaatgcaaat 1140 cttcttcttt aaacttgtat ggcctcggtt ttaactcgct cagtctatct ctttttattt 1200 tctttttgtg aaactttgta agcagattct actcactctt agctttgtaa cggcataagg 1260 cacgcttgat ttgaagttgt gacgaatttt tggcgagttt tcaaggtggc aggggtctac 1320 tgccttggca gtgtaggagc atcggcttaa aaaatctata actcggtgac ctctgactca 1380 actttgatgt ggattgttga aatgaatgca ctctaaagtt tagtttacta aaaaatttaa 1440 atcactaatt tccgatctat atcaaatttt taatgaattt ttaaatgcaa agggatctgc 1500 tgccttggca gttttgaaca accagctttg aaaaattgta tcttagtact tacctacatt 1560 tttttgctga aatttgttgg aaaaggaact ctactaagtt tggttttagg aaaaattata 1620 cttgtcaatt ttaaactatt aactgatttt tagtgaattt ttaagtagaa gggggtctgc 1680 tgcctaggca gctcaagtca ccttgctttg aaaacacata tctcggacgt caaacctcgg 1740 atcaccatga aatttggtag ataggagcaa ctctaagtca acctcaacca caaaaaattt 1800 caagtgcata ggagctgtag gagaatgttg gcaaatttct gaacgacaag ggatctgctg 1860 ccctcaactt gacatactct aagtaagttt tccttcccta atcaccctct aatcacatcc 1920 tttagcacct aaattgctat attatcactc attcgtctta ttatcattaa ttaatgttat 1980 ttaataattt caaagaactt ttacctcact tggaaattaa tcttaaattc ttatctttcc 2040 atccattttt atcctttaag gataaaataa aaaaaataaa ataaaaatta atctgatctt 2100 ttaatttttt cctatttctt ttaaccttaa cctttaaact tttactttta accttaaact 2160 tttactttta accttcaact ttaaactttt acttttaacc ttacttttac ttttattact 2220 tttgaacttt cacttaactt ttaattatta attctaactt taattttaat tttatttttt 2280 atttttattt ttattttaat tttttaatct tccaactttc atcttttatc ttaaaaaaat 2340 cttaacatca tgttagtgct gaacttaaat atttaaggct atttattact gaatttccaa 2400 ttctagatga agttttgtca tcaaaacttc atccgtagat aacttcctat atagaactcc 2460 gatttacatg gttaatacca tcttggaaag ccctagacta gcactctagc atggtattca 2520 ttgtttttat tttattttat tctaattcat aattttcaga gtttaagttt gatggaataa 2580 gtcttggaag gtacttaact aaatgaacta caaatgctaa aaattaaatc ataaaaatgt 2640 gtaactaact tgttgtgttg ttggattaat cttgattatt atatcatttt ggttttccta 2700 tcttatatat gatttgcatc tccacatcaa ttaatattgg gctctaatct aagttataat 2760 ctaattaaat caaatttaag tgaggggaga aaaatccact caca 2804 // ID Gypsy-9_PIT-I repbase; DNA; PLN; 4939 BP. XX AC AATU01000071; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PIT_; KW Gypsy-9_PIT-LTR; Gypsy-9_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4939 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000071; Positions 70889 65951. XX CC Positions [3458-3973] - Integrase core CC 'CTTGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 30..1049 FT /product="Gypsy-9_PIT-I_2p" FT /translation="MTISTRSTSTTPGTSTTTQSPSGNDSSTVPVALFMPL FT AAPQLRSTSHAALVQWRKLRREYEDEVTMRCKNDAEKMAEVLVSVKKSFNK FT RLLEVWCEFDWEVDIDTVTDEFIITKVDEIISSVKNNTVPDVATLFKENVK FT MDLTESDVRERVMQFFAKSREFIEEQGWQEFFTGNEGKRLKCKLLVESLEP FT RSLREEITTTIKYQARIAKESEKELFKLILDKAFEQDRDFQRRKRSPPSTQ FT FERTKKTNGTKEHTEPRAKYRRVERGGKKAGGGDAKHGQHKNGKGTGSSPP FT TGGCLHYKGDHWLVHCPDASADMKKELLKMMHDRRDRNKAPNWAESDA" FT CDS 1791..2972 FT /product="Gypsy-9_PIT-I_3p" FT /translation="MKSIKSVGMPGAACKEAGKDEYRQTSDYRPANAETEP FT IAGVMPILQVITEHVRDMKYFGLFDFIKGFWQLPLAKACQEILSYMTDAKV FT FTPTRVPQGCSDAALHFQMTMEKCFEKLLHKHLLIWIDDLLKFSAEVCYSC FT SYVLHLDKLEELFNLMNKFGLKLSAAKSSLFQRSVKWCGKIIDGEGVRHDP FT ERIAALREMPLPTTAGELQQFLCACNWMRDSLINYAGHVRTLQKWLDETLK FT GGKRTKRAAARIPVTLNDAEKAAFDQVKDCLASAAKLAHPSADGQLSVFTD FT ASDTAWSVIVTDVHDWETRKPVNEQRHQLLHCLSGTFSGSQANWSVIEKEA FT FAIVAACDKLPYLLLRPAGFRLYCDHKNLIHVFAPDATVKNIFEGNYCGGL FT " FT CDS 2972..4639 FT /product="Gypsy-9_PIT-I_1p" FT /translation="MKLGEFRYEIHHIAGEDNVWADMVSRWARMPTTTRVK FT RVSTRRQQQNERLILRPLDDTGFVWPTLEAIESAQRRFGTTAERTDLNDDA FT DGIWHKDERLWIPVNATDLRRRLCIIAHCGPQGHRGRDAMMAHIGRLFHVP FT QLRQCVERFLASCLLCHHVKGGKVVPRPWSETYHCNERNQALHWDFLYLEE FT AYGDMQYLLVLKDDASHYCELVKCETPTSTIAADAIMDWHSRFGIPNDWIS FT DQGTHFKNEVIEELCTRLKCKQIFSPTYSPWINGSVERVNRDILQVLRALI FT LDYKLNHRDWPRLIPIVQASLNHTAVPSLAGKTPGELFTGLEPPSPLQAVY FT LGPEVDPSVQPARTSAEIESSLNELRVSIREMHKAVEDARLKQTLLNKKKE FT RGDNIINFNVGDYVLRSRVDEKGQIKLLVTWIGPYAVTAALPYDVFKVKHL FT VSGSELDVHASRLKFFADKDLEVTEELLEHVAAQGIILRVRELRRHRWNDR FT SRSYEILVGWHGLETIEDSWEPLVSLHKDVSTLVQGYVATAKASKLERHLK FT ALEAPKKRR" XX SQ Sequence 4939 BP; 1351 A; 1105 C; 1326 G; 1157 T; 0 other; aagaattctt tagcagtgct aaggtcaaga tgacgatatc gacaaggagt acttcgacga 60 caccagggac ttcaacaacg acgcaaagtc catcgggtaa cgactcgtct acggttccgg 120 tggcactgtt tatgccgctg gctgctcccc aactgaggag cacgtctcat gctgctctgg 180 tacagtggcg gaaacttcgc cgcgagtacg aagacgaagt aacgatgaga tgcaagaacg 240 acgctgaaaa aatggctgag gtgctggtca gcgtcaagaa gtccttcaat aagcgacttc 300 ttgaagtttg gtgcgaattt gactgggagg tggacattga cacggttacc gacgagttca 360 ttatcaccaa ggtggacgaa atcatatcgt ccgtcaaaaa caataccgta ccagatgttg 420 ctactctgtt caaagaaaat gtaaaaatgg atttgacaga aagcgatgtt agggagcggg 480 tgatgcagtt ttttgcgaag agccgcgagt tcatcgagga acagggctgg caggagttct 540 tcacaggcaa cgagggaaag cggttaaagt gcaagctgct cgtcgaatct ctcgagcccc 600 gcagtctccg cgaggagatt actactacca tcaaatacca agcaaggatt gccaaggaga 660 gtgaaaaaga gctttttaaa ctcatcctgg acaaggcctt tgagcaagac cgggacttcc 720 aacgccgaaa gcgctctcct ccttcaactc agtttgagcg aacaaagaaa accaacggaa 780 ccaaagagca taccgagcca agggcgaagt accgtagggt tgagcgtggt ggtaagaagg 840 ctggtggcgg tgacgctaag catggacagc ataaaaacgg caaaggcacg ggctctagtc 900 caccaaccgg aggttgcttg cactacaagg gtgatcactg gctggtacac tgtccggatg 960 catctgcaga catgaagaaa gagctactga agatgatgca cgaccgccgt gatcgcaata 1020 aggccccgaa ttgggccgaa agcgatgcct gaaggttaaa gcgcattaag gattgccttt 1080 taagacacga caaaacaatt gttgttgaag gaaggttgtc catgccctac tgcgctgaca 1140 ccggggcgga aagaagcata atcagtgctc aaaaattgca agaactggag aagttgggtg 1200 gtactgtgag aacgactata ctacctcgcc cgattttctg tgagactgtt ggcaagttcc 1260 agattgtgac gaaacactct gtactcttgc atgtgatgct ttatactgcc gctggaccag 1320 taagacctgt gaagccctat gaagtgctgg tgattgagtc tgacgaggat ggattcattt 1380 tgggtgagga catcttgaag gaccttggta tcagtataga cagccagttg gagcaactgg 1440 cggaaaggag tgcgatggac gaatgacgat ccaattcctt ttgaagatga tttcctgttt 1500 ggagttgttc cggacgatga cgttcggcga gcagtggaga atatgatcgc gaaggccatc 1560 gataatggat ttccgttgga gaaggtggac agattgcgga cgattgtgta catgttcgat 1620 gtttggaggt tgaaactggg tccagatctc tctgctaagg tctctccact agaactacgc 1680 ttacgaaagg gagcaaaacc tttccgggtg taagccgaga caatatccgc cgcaccttcg 1740 caaattcttg caggaattca gcgacgagct agttaaactt ggttgggtgt atgaaaagca 1800 tcaagtcggt gggcatgccc ggcgctgcct gtaaagaagc aggcaaggac gaataccgtc 1860 aaaccagcga ctaccggccc gccaatgctg aaaccgagcc aatcgctggc gtcatgccta 1920 ttctacaggt tattactgag catgttcgcg acatgaagta ctttggactt tttgacttta 1980 taaaaggctt ttggcagttg ccattagcca aagcatgtca agaaatctta agctacatga 2040 ctgatgcaaa agtatttacg ccaaccagag ttcctcaagg ctgtagtgat gcagcacttc 2100 attttcagat gactatggag aagtgtttcg agaaattact ccataagcac ttgcttatct 2160 ggattgatga tctcctgaaa tttagtgcgg aggtctgcta ctcttgctcg tatgtgcttc 2220 atctggataa attagaagag cttttcaatt tgatgaataa atttggcctg aagcttagtg 2280 cagcgaagtc aagtctcttt cagcgctctg tgaagtggtg cgggaagata attgacggtg 2340 aaggtgtacg acacgacccg gaacgcatcg ctgcactacg tgagatgcca ctgcccacca 2400 ccgccggaga attgcaacaa tttctctgtg cctgtaactg gatgagagat agtctgatta 2460 actatgcggg ccatgttaga actctccaga agtggctcga tgaaactctg aaaggtggaa 2520 aacggacaaa acgagctgca gcccggatac cagtgactct caacgatgcg gaaaaagctg 2580 cttttgatca agtaaaggac tgtttggcct ctgcggctaa gttggctcac cccagtgccg 2640 atggtcagct ttcagtgttc actgacgcct cggacacggc ctggagcgtg attgtgaccg 2700 acgtgcatga ttgggagacc cgaaaacctg ttaacgaaca gcgtcaccaa ctcttacact 2760 gtctgagtgg gactttctcg ggatcgcaag caaattggag tgtgatcgaa aaagaagcat 2820 ttgcaattgt ggcagcttgt gacaagttgc cgtacctgct tctccgacct gcgggatttc 2880 gattatactg cgatcacaag aatctgattc acgttttcgc ccctgatgct acggtaaaaa 2940 acatattcga gggaaactat tgcggtgggc tatgaagctc ggtgagttca gatacgaaat 3000 ccatcacatt gctggcgaag ataacgtttg ggctgacatg gtttcaaggt gggctcgaat 3060 gccaactacg actcgtgtaa agagagtgag tactcgccgg cagcaacaga acgagcgttt 3120 aatacttcgg ccacttgatg ataccggttt cgtgtggcct accttagagg ctattgagag 3180 tgcacaacgg cggtttggga cgactgcaga acgtactgac ctcaacgacg atgccgatgg 3240 catctggcac aaggatgaga gactatggat accagtcaac gctactgatc tgcgtcgacg 3300 cttgtgcatc atcgcacact gcggcccgca gggacacaga ggtcgagacg caatgatggc 3360 acatatcggc cgactcttcc acgtaccgca acttcgtcag tgtgttgaga gattcttggc 3420 aagctgcctc ctctgccatc acgtgaaggg agggaaggta gtgccgaggc cctggagtga 3480 aacataccac tgcaatgaaa gaaaccaagc gttgcactgg gattttctgt atttagagga 3540 agcttatggt gacatgcagt atctattggt actaaaagat gacgctagtc actattgtga 3600 actcgtgaag tgtgaaaccc ctacaagtac gattgctgca gatgcaatca tggattggca 3660 cagtagattt gggatcccta acgactggat cagcgaccaa ggtacacact tcaagaacga 3720 agtgatcgag gagctgtgta ccagactaaa gtgcaagcag attttttcgc ctacttacag 3780 cccatggatc aacgggtcag tagaacgagt gaacagagat attcttcaag ttttacgagc 3840 tctcatcctg gactacaagc tcaaccatag agactggcca agattaatac ctatcgtgca 3900 agctagccta aatcatactg ccgtgccgtc actggcaggc aagacgcctg gtgaattgtt 3960 taccggcttg gagcccccat caccactaca ggcggtatac ctgggaccag aggtggatcc 4020 cagtgtacag ccagctcgaa cctcagccga gatcgagtcg agcctgaatg aactaagagt 4080 tagtattcgg gagatgcaca aggcagttga agacgcccgt ctcaagcaga ctttactgaa 4140 caagaaaaag gagcgaggtg ataacatcat caacttcaac gtaggtgact atgtactgcg 4200 ttctcgtgtg gacgagaaag gccagatcaa actgctcgtt acatggatcg gcccctacgc 4260 agttactgca gctctaccct acgatgtgtt caaggtgaag caccttgtat caggctcgga 4320 acttgatgtg cacgcctcga ggctcaagtt tttcgccgat aaggatttgg aggtgaccga 4380 agagctgttg gagcacgtgg ccgctcaggg catcatcctt cgtgtgcgtg agctacgtcg 4440 acaccgctgg aacgaccgga gccggtccta cgaaatccta gttgggtggc atgggctaga 4500 gacaatagag gactcgtggg agcctctagt atcactgcac aaggacgtga gtacgttagt 4560 gcaaggatat gttgctacag ccaaagcctc aaagcttgag cgccacctca aagcactaga 4620 agcgccaaaa aagcggcgct aaagctttac gtgtataccg gtatacccct cagtataacg 4680 actatacttt cactgaattg aggtttatcc ttggtattgt ggttgttttg gtcattttca 4740 gttggatttg catggcaagg aagacttcaa ctgcaatatg ttgaagttgg tcacataaag 4800 cagaccgcgt gattagtcat atgactagtc acatggttat tcatgatgag acagcgtatt 4860 accgagcggt aattattctg taataaaatg agtacaagca caatttgccc gagtggtcag 4920 gttgggcttg aaaggggac 4939 // ID Gypsy-16_PIT-LTR repbase; DNA; PLN; 1017 BP. XX AC AATU01002293; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PIT_; KW Gypsy-16_PIT-I; Gypsy-16_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1017 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002293; Positions 27247 26231. XX SQ Sequence 1017 BP; 239 A; 237 C; 267 G; 274 T; 0 other; tgtggtgtag tgatttctcc gtagttgcga attatcaccc gtcgacaaag acgtgacacc 60 gcccaagatg ttcaagcgac gaaccctcgg tcaggatgta cggagacgcc aaggtgcaag 120 ggactcgacg gcgtcacctc cgagttttca gcaagtatcg gatacggcct tatgtcactg 180 aatccaggct gtccttatta ttaataatgg actggccgga ttcgcattca gcggaccatc 240 tacggtacga gccctcagtg gcggttggga tgagttcgcg gaatactcag cgacctttgg 300 aagacacgtt caccgtctgg gacagggcgc ggaccgttaa agatgctcat gcgacagtgc 360 agacgacgct tggcatgcaa gaagatccat aacggatcat tgttcacttg atatttgtat 420 acttgattag gacttcttat taggaataga cccgaaaggg taagcttaaa tacagaacag 480 aatttccact caagcacaca gagcgacgtc cggcttcaag gtaagcgtca ggtcaagctt 540 gtttgagcgt gttatgcctg tcggtagact cgaagctctg tagcgagggt tcatccggca 600 aggccaagag actttgtgta ttggccgatt attatcggga ggttttacgt gacggcttat 660 tgttgcctat ttgcacgact gggagtgctt taattgcctc ccctttattt cttccagccg 720 agtgttgaac actcggtgat ctcgtaaaag gcttacccgt gcctggtacc cttccgctgt 780 tgggacaacg aggattcaaa acacctgcta gctttgctcg tgctagtagc gtgttctttt 840 ttttactggt tggcctatat aagtagttta caaggtccag tttgtcccgg tgcaagggca 900 gaactggggt cttcaggtcc gcccgaacga tcgtttacta tcctagtagg cgtattgttg 960 tgggaacatc ctaactacat ttgtagctag agttcacgtg ggaattccaa caccaca 1017 // ID Copia4-LTR_VC repbase; DNA; PLN; 956 BP. XX AC scaffold_80; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia4-VC; KW Copia4-I_VC; Copia4-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-956 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 128-128 (2008). XX DR Genome; scaffold_80; Positions 268178 269133. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 956 BP; 275 A; 207 C; 221 G; 253 T; 0 other; tgcggtgctt ccggaagaaa ctaataatat gtgtgcctgc cttacaccac ccagatggca 60 atcgctataa gcggccatag cccacataat tcatgaaccc atgcaagggc tccaagcaaa 120 agattgtgaa tctgctggaa aggctgcctt actcaagacc ataatagtgt ttttcgttcg 180 cttccactgc acaaggactt accaatggct tgagaacagt acactccaaa gagtgccaga 240 agcgaaatga acagctgaat tactgtgaag caagatagat ttttggaatg gtaaaggccc 300 attccactgc caccaaacca ggccatccaa aatgcttttg aattaaacta tgtttgttga 360 actctagaaa gatctatcct atttcactca caacagggac agaaacgtat ttgtagtggg 420 agactacagc aagctgaagt acgttggagt gtctgggaat gtctgggagt acatggtaat 480 attatgcacg gtgtatctgg gaggtttatt aagcatgaga attctctggg aaaggccatc 540 gtccataaat gattcaggat ccatattgtg tggtttccta tccgtaaaat gcactttcgc 600 caggatatgg aagagctatg ccggcatccc cggcaacaga ttttcttagc gccggctttc 660 ctccgtaaac ggggaccttg ctaattcccc gtaagaatga aaaaactgct gcatatgtgg 720 cgttactttg gcctaggtcc ttgcaaggcc ttgcaaggat caaaacaagg gtatggaaat 780 gtggcatgta taatggaaag cgggaacatc caccttaggg ggccctactg tgcccactct 840 tggagtggac tggttccact aactgagtgg atgtccactt tgattacggc cgatcgttca 900 aaataattat attagctaca tgtagctaca tacctcattt gtaagatttt tgtaca 956 // ID Gypsy-18_PIT-I repbase; DNA; PLN; 12189 BP. XX AC AATU01002850; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PIT_; KW Gypsy-18_PIT-LTR; Gypsy-18_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12189 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002850; Positions 25389 37577. XX CC Positions [7001-7402] - Integrase core CC 'CCAG' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 2772..4394 FT /product="Gypsy-18_PIT-I_5p" FT /translation="MDLLTGESRGYWKYHAPGKWFRQAKVGGKINNEKAIL FT LLDSGAEVSILDTAFARKVGCQVDGSRIQDCVGIGEGVYRTNGRTRIKITL FT AGCLVYWFDIWVGDLAGQDAILGMDFMVPAGVRLDLADGTLCFPDEMRIQL FT SGRRPLYGAKMRIIRADKTTWIEPGETWELSDRLKWVEHERLWVTRGEKWV FT PTVIQGPGRSQYRQVTNVSDKRLLLDHYEEIGRWLAKDGIPRRPGYVSVGS FT RRYKEWQNLVYEATTEIESLGEVELPAEPTGPLVDRPSYPTPRKILQRDRR FT VEIQAMEVGSMTGDDPQSRPLDNAGSVDEGLQRAKAEQPDPADPQVDPSFP FT LDKVPGSLSRVATLVKPEPSGSDSLEDRLDPTGDFPSTRIPDPTKTEGMTV FT EGESRCLDPRVDQTKTEDEQVCYREGGDLHAEDLGEGMAVIPEVPLTTEEV FT TIDDIQVDPGANEPTEVDSLRQKIWESRHLLIGKGNALPPAARGVKCDIDV FT GDAKPIAQRVRKVAPQFREKLSDLIKGLLQPRSSASQRPRGRRRW" FT CDS join(4472..6997,7001..8107) FT /product="Gypsy-18_PIT-I_3p" FT /translation="MVYPMPLINELLEDLDKVLWYCSLDMASGFWVVTMTD FT RARAISAFITPFGLFEWTRMPFGLMNAPQIYQRLIDNALYGFTRIPEPETG FT GSGEGDAEVDPFEAGEPGDPGTPSVLGRRSYIDDILIPAESWDQLCERVTS FT LLEACTKWNLSISVVKSYWGMRKVDYLGHRVSKAGLEANPKDLSSLADLSF FT PQSLRAMQSFLGSLNYYSRFIEDYALFAAVLYELREVDFAAMTAPAVRMKI FT QQALAREMSDPRRDPSGMTSEEDLKQELDPPRDQQREDPVWIETTDQNMEK FT AESRWIRAQHAFVELRNRIATTPILRHFDPERQPTVIVYASDWAVSAALMQ FT EHEGICHPVTFVSRTLKPNELNYGAVEKEILALLRVLDLNYNLLVGRSIRI FT LTRHSTLAWLFKSAGLQGRLGQWAALLSPWTLEIVKCSKGEDEILGVLAAS FT ITPRAKMDEALTRIAPKKEPKRRIQIPIPTVQVDEDLYVLSFDGSARVRRG FT GGAYSAILWRLPGWEVVRARSTYAEGLTVNEAEYNGLLLGLDLLKGQDPKR FT LVICGDSNLVIRQVRGEIDCKAPALTLLRQKVMIHLRGWLNHELVHVKRDW FT NASADSLASAALRNQCGVEVEGEAEHQDLVTLNRLDEVVVVGSGKRTVQVM FT AVTRSRGRIGSSPPILEETFVKRVRIERILKAQNEEAWILGLKKYLMGDVR FT DLSREDAKFYSVIATDYAVDLNDLLFYCPPTKRVHEDRDGLMRLVMPETLQ FT QDVLHHYHASLEGGHQGIGRTYQRIRECFHWRGLFKSVQRYVGECVDCETG FT KGRPTIEGESPGNVRATYPFQIIAMDHIPSLPKSFKGNTELIWVDLFTGYV FT IAKASASRTAQTIAESYEECVFRRFGASEMIRHDREPGFMSDFFRAFNRIL FT GQRQRATMAYRPQANGSAERMVQTITRALKMYVQDLDQRDWDEYAERLPFA FT MNTAQDRIRGDTPFYLVHGWDPKSTLEAAIPVCSTKKRNRDPRRWRYQVQK FT YYREARSQVNERLRSAIQDRADRHNEDARPHQIQVGSQVWLYLDRVKEGYA FT RKLAHLWHGPFRVREKIGEHAVRLETAGTEYRLFPVVHVSKLKLVKEYPDR FT PQVRLSVDASDRVDFDEVLLPEDSWNVDLEADEFEVEKITDMRSGKRTRYG FT RIYREFLVHWRGYDEPSWVDEADLNCGALLYDFLRDRTNRNRFGVMQSHEE FT E" FT CDS join(1..1479,1483..2418) FT /product="Gypsy-18_PIT-I_1p" FT /translation="MVRVPGSFGDSGFHRESQEDAQVKIEPGEEASSEVGS FT TKTLLNETRSADRWSFGRNSVDGREVDPDPDLEEKPLYPPQVPSGTPADLD FT ASQDPLTKQGKVKAKRYAFADSPVKPTPYLNPSPLVEETRKKTKTSKTTRK FT KMQAPESEEDQAGSRSSWSDKDLEFVYRHQALRDFLHQDPVMQILNPRQIE FT DPREPVRAPTKTANKLVAVKDLLRLLTESGIVAGVFDAEDIFELDLDLIVS FT ATRDLFARVKSITGERSRTMDPVSSPRISQAASSNYESAAEDESDTSSEPR FT RMTLGPSGASMLEARARIRGQEAPVNVKARDPVRPTRDLTQSSQDRARSGK FT KPVGLSSDQARGNRLTDPVPPVDQTATGSSDTSSGTLQRHFEAAMNRFLAE FT QGMRAPVPQVQVLHEHGARDVEMESVEGDNSHDEFDPDDLDGPSTSSAVVA FT TATAGAGGSSMIQRVRISAISDLKEFTGKDQDEDRARTWISKVKSALMDQA FT SDAEKCLTFADLLAGPARNWYRQLGRSTRNKWPDLLRSFQTQYCGLGVSVV FT RQYYHARRRSDESPLEYLHRLNVAGLRAKLKIKDGGSKVLREHVDHFIETL FT GDVDLADRLTLLRLPDADELREVLRAVDRAKHRQKKAAVGSGKYRQKAPTP FT TAPARRVHQVTAPDSGTESGSDGSDSDPEDYRRVCLTASNDRTAKTGDNSR FT PGDTVPGDRGMYRSRDLMDGAAQVRCSQCGSQKHTESGCWKHLVCEKCGKK FT GHPGDHCFYVCRGCGEIHDVGKCPMEEFYNQIRQWFDPAKHRGMLPEVAEK FT MLN" XX SQ Sequence 12189 BP; 2948 A; 3053 C; 3734 G; 2454 T; 0 other; atggtgcgcg tgcccggatc ttttggtgac tcgggatttc accgtgagtc ccaagaagat 60 gctcaagtga agattgagcc aggggaagag gcgtcgtcgg aggtcggatc gacgaagacg 120 ctgctgaatg aaacaagatc cgcggatcga tggagttttg ggaggaactc tgtcgacgga 180 agagaggtgg atccggatcc ggatctagaa gagaagcctc tctatcctcc ccaggtcccc 240 tcggggaccc ctgcggatct tgacgcaagt caagatccgc taacaaaaca agggaaagtg 300 aaggcgaaac ggtatgcatt tgcagattca ccggttaagc caacaccgta cctaaaccca 360 agcccgctag tcgaagaaac aagaaagaag acgaaaacga gtaagactac gcggaagaag 420 atgcaagctc cagagtcgga agaagaccaa gctggatcca ggtcaagctg gtccgacaag 480 gatctcgagt ttgtgtatcg ccaccaagct ttacgcgact tcctgcatca agatcctgtc 540 atgcagatcc tgaatccacg acagatcgaa gatccaaggg aaccggtgag agcaccaacg 600 aaaacggcga acaagttggt ggcagtcaaa gatctattac gtttgcttac ggagtcaggc 660 atcgtagctg gtgtgttcga cgcagaggat atcttcgaac tagacctgga tctcatagta 720 tccgcgacgc gggacctctt tgccagagtt aagtccatca ccggagaaag gtcgcgcact 780 atggatccag tgtcgtcgcc gaggatcagc caagctgcgt cctcaaacta cgaatccgcc 840 gctgaggatg agtcagacac gtcgtccgaa ccacgacgca tgactttagg accctccggg 900 gcatccatgc tggaagcgcg ggcgaggatc cgaggacagg aagccccggt gaacgtgaaa 960 gctcgggatc cagtacgccc tacgcgtgat ttgacacaat ccagccagga tcgagccaga 1020 tccggcaaga agccagtggg attatcgtca gatcaggctc gaggtaatcg cctcacggat 1080 ccagtcccgc cagtggacca gacggccaca ggctcttccg acacttcctc gggcactctg 1140 cagcggcact ttgaagctgc gatgaatcgc ttcctggccg aacagggtat gagagcgccc 1200 gtgccacaag tgcaagtgct ccacgaacat ggagcacggg acgtggagat ggagtcagta 1260 gagggggaca actcccatga tgagttcgac ccagacgatc tggatggccc atccacttcg 1320 tcagccgtgg tagcaacagc cacagccggg gcaggtggat cgtccatgat ccagagggta 1380 cggatctcag ccatatcgga cttgaaggag ttcacgggca aggatcaaga tgaggaccga 1440 gcgagaacat ggatcagcaa agtcaagtcg gccctcatgt gagatcaagc gtcggatgct 1500 gagaagtgtc tgacctttgc ggatctgcta gcggggccag ccaggaactg gtatcggcag 1560 ctgggcagat caaccaggaa caagtggcca gatttgctgc gcagtttcca gacccagtac 1620 tgtggattag gagtgtcggt ggtacgacaa tactaccatg ctcgccgcag atcggatgaa 1680 tccccgttgg aatacctaca tcgactaaat gtggccggtc tacgggccaa gttgaagatc 1740 aaggatgggg gatccaaggt actgcgggaa cacgtggatc atttcatcga gacgttggga 1800 gatgtggatc tggccgacag gctgaccctg ttacgacttc ccgacgcaga cgagcttaga 1860 gaagtactgc gggcggtgga tcgcgcgaaa caccgccaga agaaggcggc ggtcggatcc 1920 ggcaagtatc gccaaaaggc cccgacgccc acggccccag ctcgacgtgt ccaccaagtc 1980 acggcgcctg actcaggaac tgagtcagga tccgacggct cggactccga ccctgaagat 2040 taccgtcgag tctgtctcac tgcgtccaac gatcgaacgg cgaagacagg agacaactct 2100 cgaccggggg ataccgtacc cggggaccgt gggatgtaca gatcccgaga tctcatggac 2160 ggggcagcac aagtcaggtg ttcgcagtgc ggatcccaaa agcacactga atctggatgc 2220 tggaaacatc tggtctgtga gaagtgtggc aagaaaggtc atcccgggga tcattgcttc 2280 tacgtgtgtc gcgggtgtgg cgagattcac gacgtcggca agtgcccgat ggaagaattc 2340 tacaaccaga tccgccaatg gtttgatcca gccaagcacc gagggatgtt gccggaagtg 2400 gcagagaaga tgttaaacta ggacgctcgc cgggtttgaa tccggtacga gccgagcgtt 2460 ctaggtactg catttatgca tttgtgaaca agacatcgct agatccaggt agcaggaccc 2520 tagatccagt cgataataca cgtgatctac atgaagtgtc agttgccagg gtctctagtt 2580 tgcgccaagt ggacgagttt tccagatcca aagtctcctc aaccctggat ctacaaagag 2640 gagaggcacg tggttactgg gagaaacgcc aacatggtcg atggtttgag cctaccaagg 2700 gtgaggtcac tgcagatcca cctaaggtct gtctggtcac tggatcctgt ggatctgagg 2760 atgttggatc catggatctg ctaacagggg agtcccgtgg atactggaag taccatgccc 2820 caggaaagtg gttcagacaa gccaaggtag ggggcaagat caacaatgaa aaagcaatcc 2880 tacttctaga tagtggtgcc gaggtgtcta tactggatac cgcctttgct cgtaaggttg 2940 ggtgccaagt ggacgggagt cggatccaag attgtgttgg gattggtgaa ggcgtatacc 3000 gtacgaacgg gagaacgcga attaagatca cgctggcagg ttgtttggtg tattggtttg 3060 acatttgggt cggggatctc gctggtcaag acgccatcct tgggatggat ttcatggtgc 3120 cagccggagt gaggttggat ctggcggatg ggacactttg tttccctgac gagatgcgga 3180 tccagctcag cggacggcgg ccgttgtatg gagcgaagat gaggatcata agggcggata 3240 agaccacctg gatcgagccc ggggaaactt gggagctgtc agaccggttg aagtgggtgg 3300 aacatgaaag actgtgggtc acccggggcg agaaatgggt acctaccgta atccaaggac 3360 caggtcgatc gcaataccgc caggtcacga acgtcagcga caagagacta ttactggacc 3420 attatgagga gatcggacga tggttggcga aggacggtat ccctaggcga cctggatatg 3480 tgtcggtggg atcccgccgc tacaaagaat ggcagaatct ggtgtacgag gcgactaccg 3540 agatcgaatc tctcggagag gtggagctcc cggcggagcc aactggcccc ttggtggatc 3600 ggccttcata tccaactccg cgaaagatcc tgcagagaga tcgacgggtt gagatccaag 3660 caatggaggt tggatccatg acgggggacg atccccagag tcggccctta gataacgcag 3720 ggtcggtgga cgaaggattg cagagggcta aagccgaaca gccggatccc gccgatccac 3780 aagtggatcc aagttttcca ctggataaag tgcctggatc cctatcgaga gtggcaacgc 3840 tagtcaaacc cgaaccgtcg ggttcagact cgttagagga ccggctggat ccgaccggtg 3900 acttccccag taccaggata cccgacccca cgaagacaga agggatgacg gtcgaaggag 3960 agtcgcggtg cctggatcca agggtggatc agacaaagac cgaagatgaa caagtctgct 4020 accgtgaagg cggggatcta cacgccgagg atcttggaga aggtatggcg gtaatcccgg 4080 aggtaccact gaccacagag gaggtcacga ttgatgatat ccaagtggat ccaggggcga 4140 acgaacccac tgaagtggat agtctgcgtc agaagatctg ggaaagccga catctgctga 4200 tcggtaaggg taatgcgtta ccgcccgccg cccgcggagt caaatgtgac atcgatgtcg 4260 gcgacgcgaa accgatcgct caaagggtgc ggaaggtggc acctcagttc cgagaaaaac 4320 tgtcggatct gattaagggc ctgctgcagc caagatcatc agcttctcaa cgtccccgtg 4380 ggcgtcgccg gtggtaatca tcatcaagaa gaacggggtg gatatacgtc tgtgcattga 4440 ttaccggctg gttaacagcc tgactcgatt gatggtgtat ccgatgcctc tgatcaatga 4500 gctgttggaa gatttggata aagtactctg gtactgctct ctagacatgg ccagtggttt 4560 ctgggtggtt actatgacgg atcgagctcg cgcaatatcc gcattcatca caccgtttgg 4620 cctgttcgag tggacccgga tgccgtttgg attgatgaac gcaccccaga tctaccaacg 4680 cctcatcgat aacgccctct atgggttcac ccgaataccg gagcccgaaa cgggtggatc 4740 cggggaaggt gacgcagaag tggatccatt cgaagcgggg gagccagggg atcctgggac 4800 cccgtctgtg ttaggacgca gatcttacat cgacgacatt ctgatcccgg cggaatcgtg 4860 ggatcagttg tgcgaaagag tgacatccct actggaggcg tgtactaagt ggaatctctc 4920 tatcagtgtg gttaagagct attgggggat gcgcaaggtg gattacttgg gccatcgagt 4980 ttccaaggcg ggattagagg cgaatcctaa ggacctgtct tcattagccg atttgtcctt 5040 cccacagtcg ttacgagcga tgcaatcctt cttgggcagt ttgaactact acagtcggtt 5100 catcgaagat tacgccctgt ttgccgcggt gttgtatgaa ttaagagagg tagattttgc 5160 tgcgatgacc gctccagctg tccggatgaa aatccaacaa gctctggccc gggagatgtc 5220 ggatccacga agggatccaa gtggtatgac gtcagaagag gacctaaaac aggagctgga 5280 tccaccccga gaccaacaga gagaggatcc agtctggata gagacgacgg atcagaacat 5340 ggaaaaggca gaatctcggt ggatccgagc tcaacacgcg ttcgtggaac tgaggaacag 5400 gatcgcgacc acgcctatcc tccgtcattt cgatccggaa cgtcaaccta cggtaatagt 5460 ttatgccagt gactgggcag tctcagcagc tctgatgcaa gaacatgagg ggatctgtca 5520 tccagtcacc tttgtcagcc ggacactgaa gccgaatgaa ctgaactacg gagcggtgga 5580 gaaagagata cttgcgctcc tgcgcgtgtt ggatctaaat tataacctgc tagtgggaag 5640 atccatccgg atcctgactc gacactccac gctagcctgg ctgttcaagt cggccgggtt 5700 gcaaggacgt ttgggacagt gggcagcttt actctcacct tggacgctgg agattgtgaa 5760 atgttcgaaa ggggaagacg agatcctggg agtcttggcc gcgagcatca ctcctcgagc 5820 taagatggat gaggcgctga ctaggatcgc ccctaagaaa gagcccaaac gccggatcca 5880 gatcccgatc ccgacggtac aggtagatga ggatctatac gtcctgagtt tcgatggatc 5940 cgctcgtgta cgacgcggag gaggagcata cagtgcaata ctgtggagat tgcccggatg 6000 ggaagttgta cgggccagat ccacttacgc ggaaggcctc accgtcaatg aagcggagta 6060 taacggactc cttctgggtt tagatttact aaagggacaa gatccaaaac ggctggtgat 6120 ttgtggggat tcaaatttgg taatcagaca ggtgcgaggt gagattgact gcaaggcccc 6180 ggccctaaca ctgttacggc agaaagtgat gatccacctg cgtggttggt tgaatcacga 6240 gttggtgcat gtcaagcgag attggaatgc cagtgcggat agtttggcca gtgccgcttt 6300 acggaatcaa tgtggtgtcg aagtggaggg agaagccgaa catcaggatc tcgttacgtt 6360 gaaccgactt gacgaagtgg tagtggttgg atccgggaaa aggacagtcc aggtgatggc 6420 tgtcactagg tccagaggaa ggattggatc cagccccccg atcctcgagg aaacattcgt 6480 gaagagagtt cgcatcgagc ggatcctcaa agcacagaat gaggaagcgt ggatcctggg 6540 actaaagaag tatctgatgg gggatgtacg agacttaagt cgggaggatg ccaaattcta 6600 cagcgttatc gctacggatt acgcagtgga tctgaacgac ttgctcttct attgcccccc 6660 tacgaagaga gtccacgagg atcgggatgg attgatgaga ttggtgatgc cagaaacctt 6720 gcaacaggat gtcctacacc actaccacgc tagcttggaa ggcggacatc agggcattgg 6780 tcggacctac caacggatcc gggaatgttt ccattggaga ggactattca agagtgtaca 6840 acgatatgtc ggtgaatgcg tggattgtga gacaggcaaa ggcagaccta cgatcgaagg 6900 ggagtcacct gggaatgtcc gagcgactta ccctttccag atcatagcca tggatcatat 6960 tccctcgttg cccaagtcgt tcaaaggaaa cacagaatag ttgatttggg tggacctgtt 7020 taccggatat gtgattgcca aagctagtgc gtctagaact gcgcaaacca ttgcggaatc 7080 gtacgaggag tgtgttttcc gaagatttgg tgctagcgaa atgattagac atgatcggga 7140 gccaggcttt atgtctgatt tctttcgagc attcaaccgg atcctggggc agcgacagcg 7200 agcaaccatg gcatatcgtc cccaagctaa cgggtcggcc gaacgcatgg tgcagacgat 7260 cacgagagca ctcaagatgt atgtccagga tttggatcaa agggattggg atgagtacgc 7320 agaacggctc cccttcgcga tgaacaccgc ccaagacagg atccggggtg atacaccatt 7380 ttacttggta catgggtggg atcccaaatc caccctagaa gcggccattc cagtatgcag 7440 taccaagaag agaaaccgag atccaaggcg atggcgatac caagtccaga aatactaccg 7500 ggaagctaga tcccaggtga acgaacgact gcggagtgca atacaggatc gagcggatcg 7560 acacaacgaa gatgcccgcc cacatcaaat ccaagtggga tcgcaggtgt ggctttattt 7620 ggatcgagtg aaagaagggt acgctcgcaa attggcccat ctatggcatg gaccgttccg 7680 ggtgagagag aagattggag aacatgcggt gaggctggaa acggcaggta ccgaatatcg 7740 cctgttccct gtggtacacg tatccaagct gaagttggtc aaagaatatc cggatcggcc 7800 gcaggtccgt ctttcggtag atgcatccga ccgcgtcgac ttcgacgaag ttctcctacc 7860 ggaagacagt tggaatgtgg atctcgaagc cgacgagttc gaagtcgaga agatcaccga 7920 tatgagatcg gggaagcgaa ctagatacgg acggatttac cgtgagtttc tggtgcattg 7980 gcgtggatat gacgaaccta gttgggtaga cgaggcagat ctgaactgtg gagcattact 8040 ctatgatttc ttgagggatc gtacgaatcg taacagattc ggcgtgatgc agtctcatga 8100 agaagagtag ggaggggacc catggatgtg agttggtcat atcgatggga ggatgaagaa 8160 ggacccacag gaagggtgtg ggtcaggagg aggaggatcg ctgatatgag ttggtcacat 8220 cggaaagaaa gagaagacga atccacaggg tggattagga ggaagaagtg aatgtttatg 8280 cataagagtg acgtgttacg tgtgaggagt cctgcttgat ctcgagcacg agctttcaag 8340 ggcccgaact atactgaccc gattgaacct gggtcattgg cgctagatcc ggatgaaatc 8400 cagcccagat ccaggtgtac actgaaaggg tggatctagc ccagatccag gtgtacgctg 8460 aaagggtgga tccagcccag atccaggtgt acgctgaaag ggtaaatcca gcccagatcc 8520 aggtgtacac tgaaagggtg gatctagccc agatccaggt gtacgctgaa agggtggatc 8580 cagcccagat ccaggtgtac gctgaaaggg tggatccagc ccagatccag gtgtacgctg 8640 aaagggtgga tccagcccag atccaggtgt acactgaaag ggtggatcta gcccagatcc 8700 aggtgtacac tgaaggggtg gactagattt ctcaaccgac gaaggaatgt tgtaagcata 8760 ttcaagtaag aaagtgtgga ttgtaatagc ttatgcaaaa ggctagctcg acccagtatc 8820 cagtcgctag ttactgctac gaaaggaatc cacgaagacg gaaacggggg cgtggtgtcg 8880 aagagcgatg aggatcaggt agtcttgggc tgaacattga agaacttgct cactagacgc 8940 tggatctggc gtcctgggtg ttggctcagg tccccgcgaa actggatgcg ccaaggctcg 9000 gcttcgtcga tctctcgcaa ggcttccaat aggctcgtgg gttctgggcg atggaggttg 9060 ggatcctcca agttggcttg acgggatacg gatcccggaa accaagctac cttatccccg 9120 cgtcggggaa gatgcaagaa ggatggatcc agcaaaatat ccacgtcaca ccaaccgtcc 9180 tggattgcta acacgaggat cacaaggact ctcttccaag ctcggcccgc atggctacgc 9240 cggttaccac gctgcttgtt gaagttggac aaccaggtcg aaccctgcaa ttgattccga 9300 gagatgggga accggtgagt gccctcccat atagcaaccc ggtgcttgga ggcgaaatcc 9360 cggaacgccc gaacgaatac cccgagtcgc ccacgcacat cacccctgaa gctaaccgga 9420 tccaccggtg tggtgaccag tgtatcccac ggggcagcac ttgtcagttc ctccacgagg 9480 ggtctggtga tgagcgaatc cacgtacccg gccctcggga tggcgtccgc tgtccgaggg 9540 aatatccact cagcccgaaa aggcaactcc ggaaacagaa ccgtgatctt catggagatg 9600 atcgcaactc ggttcaattt cttggctgac caaggctcga tgtctctggc agcgaaggcc 9660 acaggagcac gtctaccagg aatgaaagca gcatccggac cgaacggagc cacggggagc 9720 atccctggca gtgacgagtt agggggggcg gggatcaaga cagatccagg ggatccgcca 9780 ccgtgaggcg atcccgggga tccgccacca tggggcgatc ctggagatcc accaccatga 9840 ggcgaccccc ctccaccaga tccgggagat ccgccaccag gcgccccccc tccgccagat 9900 ccaaggagtc cgccaccacg aggcgacccc ctcccaccat cactgcccga tccaccgtca 9960 ctgtcgacgc ggatcgcaga tcccgcagtg gcgcctccgg atccggctgt gccagcgact 10020 tgtggaggcg gcgtcgagag ggatctccgc cgggcttcgg atcgggattg ggatagagcc 10080 cgccgcgtgt cttcctccaa ggcctcctca gcggttcgag cctcctctga atcctctgga 10140 ctctcgtcgt catcgtcgtc gtcgtcagcg tcctcatcgc ttagagtgaa gggatacggg 10200 ccggcagacg gcgtacgctt tgacgacgat cggtcaggag gccctgagcc gtcggaccag 10260 tcagattcct catcctcgtc gtcctccgaa ctacccagtc cacacccagg gggaatgacg 10320 cgtttagctt tccccttccc gggtccagta cgggccggcg gagggttggt ggaagcggac 10380 tgaggaacga tgggcgtcgt taccgaagga ccagcggtgg atcccgtctt ggacgtcgat 10440 cccgattttg atactgccgt agatcccgtt ttggccgtcg atccggactt ggacaccgct 10500 gatcctgttt tggatggggc aacggatcca gccttggacg ccgtagaccc agtcttgggt 10560 ccggatccag attttgacgc agcagcggtg gatcccgtct tggacgtcga tcccggtttg 10620 gacaccgtcg atcccgtttt ggacgtagca acgggtccag tcttggacgc cgaggtagac 10680 ttggatctag cggtggatcc agacttggat ccggcacctg acttcgagaa agaaacggaa 10740 gtcttgggcg cgggtgtaga tcctgccttg gacacagaag tggatcccgc ttgcggagca 10800 gatttagaaa ccggattcgt tttgggcttg gctttcgggg aagctcgggc ctgcttatgg 10860 ggacgggacg atccggtgct aggagcggga gatgtactac gcgggcgttt cgcagtcgac 10920 gaatccgccc cacttaccgt cggaagagga gcagaaacgc tagcggcctg agagggcccc 10980 gacaagggag gaagtggatc cgagacggca gctgtcacca gcgccagtcg tcgacgtgcc 11040 aaatcgcgct ccgacaggcc gcgatcgcgc tccaggatca gctgttgctg ctgagtttgg 11100 gctgcggaaa gttgatcctg gagtccagcg gtggtcgcat ctgctttctt caatttgtca 11160 cctagattga caataacaag tgaatatgga gttactagca agggctaaaa gaggatccac 11220 gtactcatgc ggcgaagctt ggattcagct ccgttagcgc actataggga tccgcccact 11280 cgggaggcgc cttgtcaggc tcctgttcgc tgtctgccag tttcggttgg atctcgtccc 11340 gcaatcgagt catacgcacg agttcttcaa gcgcgtaatc tcgtccggca gacgccctct 11400 cgagcgactc cttggtgtct tgcaactcct cagagagttg agccagggct acatccggcg 11460 acgagggagg tggatttggc gcgggggacc ctccgcgcgc cgaccctaag gcggatccgt 11520 catgggcgga tcccacatag tcgttggtca ccacctcctc ctgggtcaaa cgcaactcgt 11580 cacggaggcg gtccaagctc acatccgcag ctgccccagc agcctgggaa tcctccagat 11640 cccgctcgag gtcgtggatc tgggattgga gttggtggat ctcagatccg gcgagtgcca 11700 tctccctgag gagatggtcg ttgtcatctc gcataacgtc tcgttgacgg gaggcgcgat 11760 ccagtcgtcc ggtcaggtcg cggatctcta ccgcctgatc agccaacagg agtcgcaggt 11820 cctgcgaccg agaggccgca cggtgctccc acccctggat ctccatcgct tggtcacgga 11880 tttgggcccg caaggtctga agttgggtag tgtgtagaga cgcagcttgg tcttgggcat 11940 cttgagccgt ctggagctcc gccgtcaggg tttgcacctg atcggaaaga gcctgagcta 12000 gaacccgcag atcggtgggc gacatagaag acggactgac cggaggggta gtggatgggg 12060 ccttgcccga cgatttgccg gtacgcttgg cgggagacat gtgtcgcgaa ggagagaaag 12120 cggttgtgga tgctggtgat gcacgtcgtg gacgctgttg tgcagcgccg accacgtaca 12180 ggaggcgat 12189 // ID Gypsy2-PP_I repbase; DNA; PLN; 6581 BP. XX AC scaffold_12; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-PP; KW Gypsy2-PP_LTR; internal portion; Gypsy2-PP_I. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-6581 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 425-425 (2008). XX DR Genome; scaffold_12; Positions 913325 919905. XX CC Positions [5378-5890] - Integrase core CC 'TATTA' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 512..1879 FT /product="Gypsy2-PP_I_1p" FT /translation="MEPWTSLVPEITEKQVEDVFKNIDPRTIIDQLEPVVL FT KQNLRLDQQEEDIIRGSTLEEEAEDNPQEEGQQEEEPEEEEREEQTNPVLS FT NLFPSSFLTALPPSTKGKQPPSVATPVSIPAPPPPPPPHPPALARHNPKTS FT MASNPITKQTYIKFRGGSDEEDDDYQDADNFIKKFESISFANKEHAEDDRK FT RIFPDLLRDHVRNWWTHVSKDVTNVNTWDKIKDAFLKRFREVGYERNVWTR FT LSHIRRRKKEKLRNYKERFQVLIDRAGGLRSRTNTGQISEAQATDHFISGL FT EDPIRLFCREIQNTPPTLDNAISSAKIYETAHYKKESCGREKKRSKKKKRR FT SSSSSSSSTSLDSSSSSSSSFEEDTRKASHKMKEKRKKDRKKEETTPRPST FT PKKEDPMDTLRKEMAELKIQVVGTQPPRPKPSYQRPNVWCTICQKPGHTAS FT ECYSNRPSYPV" FT CDS 2936..6253 FT /product="Gypsy2-PP_I_2p" FT /translation="MTEETAHDLGYHDFETTPRMLRLADQTRRKPAGILRN FT VETLIGGVPFKLTYIIIRPIVKKGYKVLIGRPWLYGAKVKTNWYRHELKFK FT DLRGPAQKPIIVSWKKVPHLGETPPTDQGYTSKTSETSSTDLKDPYDVSYL FT TCYLVDEDEEDSGNKDPESEKNLDLARLGISSTSHVEGIVNPDDCLDIDLG FT EGKTLKVSKYVTPEELQSCGEIFLKYHDIFAWSIEQMLGIPKEYGEHRIDL FT VEGAIPVRQRQRRENPKYSMLVKDEIEKYLKAGIIFPVLSSEWVSPIVVVP FT KKNGKIWVCQDFRKLNSVTKKDHHPLPFIDQVLDQVAGHECYSFLDGFSDY FT NQVSIREEDKDKTTFTTDWGTFAYNRMPFGLYNAPATFQRLMNTIFKDFLR FT KFVEVFIDDFCIFGKREDHLKHLGITFERCRQMHLALHPEKCFFFMKEGIL FT LGHRVSERGIEVDQMKIKVIKDLEPPKNIRELRGFLGHIGYYRRFVQSYAT FT LAAPLTKLLKKDQYYDWTAEQERAYLVLKEALMKAPVLQAPDWKRPFHVYM FT DTSSFAIGTILSQKDEDGKDHPVYYASRQLNAAEKNYTTTEREALGMVYSC FT RKFWTYLLGYTFVFHVDHSPLQYLVKKADLSRRIARWVLLLQEFDYTVQVK FT KGSTHANADYLSRLQTEEQKEEILDDFPDEDLFQMTTSQTIRYMDEYRYLQ FT TMQCPEGQDPVQRSVFIHKMSPYELKKGILFKMGADEELRRCLESCEVGGV FT IKALHSEAAGGHYALKNTVKKILAAGYWWPTMYKDTHDYIRRCDACQRVGR FT PTSSTQWPLCPILPLAPFEKWEIDFVGPIQPVTQYTRKQYILVATNYSTKM FT VEAEATRKDDATTVAEFFFRNVISRYGCPLELVSNRGSHFLNYLIEVLTEY FT FQIRHRKTTPYNPKANGLTKKSNGLLCKILKKVTVNYAYDWDAKLPAVLWA FT YRIAEKITTCRTPYYLTYGMNPILPVKFEVPTHRVLSADRLSVEESQEVRF FT LQLTQLEENRDEARDFTLDIQERRKKNHDNKIRKIDLKDGDLVLLYDNRHF FT KFPSKLHLRWMGPYKVTKIYENGSLELEDLAGNPFANRVNGWRVKKYQG" XX SQ Sequence 6581 BP; 2162 A; 1392 C; 1554 G; 1473 T; 0 other; tacagttaca tttttggcgc cgctgttggg gaactgtgtg ccaaagaatt cagacgagtt 60 gcaacttcct ctgatcggaa tctcaccact atgaatgagg tcagaggacg aagaagaaca 120 acatgtggat gaacgtgccg aacgcagaag acgaagggac gagattcgaa ggaagcaaga 180 gctagaattg aagcagaagg agagtaattg gattcctcca ggacagtcaa gaagagctcg 240 aagccgatat cctccttctc cttctagtat cgctctgttc ccataaagag agagattagc 300 tgtaaactta tacagagaag aaggtgacga accgtcgaaa agcgagaacg ttgaagatac 360 gcctttaagt ccatgttcat cggattcaag aagatcccca tcttccctga ggacaaggag 420 acatacgact tcaacaatct cctcgtggac aaagaagtca aggtagaata ccaagaccaa 480 aggtacggaa ggtgctggac cttctgaatc catggaacca tggacttccc ttgttccaga 540 gataactgag aaacaagtcg aagatgtctt caaaaacatt gatccaagaa ccatcatcga 600 tcaactagaa ccagtggtac tcaaacagaa ccttagactt gatcaacaag aagaggacat 660 catccgagga tcaacactcg aagaagaagc agaagacaac ccacaagaag aaggtcaaca 720 agaagaagag ccagaagaag aagaaaggga agagcagacc aatccagtac tttcgaattt 780 attcccttca tctttcctaa cagctcttcc accttcgaca aaagggaagc aaccacccag 840 tgtggcgacc ccagtttcaa taccggcgcc accacctcca cctccacctc atccaccggc 900 gttagctcgt cataacccaa agacttcaat ggcgtccaac ccaatcacca agcagacata 960 cataaaattc cgaggagggt ccgatgaaga agatgacgat taccaagatg cagataactt 1020 cattaagaaa tttgaatcta tctcgtttgc taataaggag catgcagaag atgatcgaaa 1080 acgaatcttc cctgatcttc ttcgagatca tgtgaggaat tggtggacac acgtcagtaa 1140 agatgtaaca aacgtcaaca cctgggataa aattaaagac gcttttttaa agcgatttag 1200 ggaggtgggc tatgagcgaa acgtatggac ccgtcttagt cacataagac gaagaaaaaa 1260 agagaaactt cggaattaca aagaacgatt tcaagtactc attgatagag ctggaggact 1320 tcgatctagg accaatacgg gtcaaatttc tgaagcccaa gccacagatc acttcataag 1380 cgggttggaa gacccgattc gattgttctg cagagaaata caaaataccc ctcctacttt 1440 ggacaatgcc atcagtagtg ccaagatata tgaaacggca cattacaaga aggaatcgtg 1500 cggaagggag aagaagcgtt cgaagaagaa gaagagaagg tcaagctctt cttcaagctc 1560 gtcgacatct ttagactcat cgagctcttc ctcgtcatct ttcgaagaag acactagaaa 1620 ggcctcacac aagatgaaag aaaagagaaa gaaagatagg aagaaagaag aaacgacacc 1680 cagacctagc actccaaaga aagaagatcc tatggatact cttcggaagg aaatggctga 1740 gttgaagata caggtggttg gtactcaacc ccctagacca aaaccttcct atcagcggcc 1800 taacgtttgg tgtaccattt gtcagaaacc aggtcataca gcgagtgaat gttattccaa 1860 tcgaccttcg tatcctgtat aacaaatgga gtgggtccct gcatgggatt actacgaagg 1920 ctaccagtaa gaagactagg tgtacgcagc gaaagaagtt cctacacaca caccaatacc 1980 accggtcatg attccgaggt atgtgccaag agaatacgca caaaacttgc tacccagaac 2040 gatggtacca cacaactcac ccccaggtgc gtgcttgaac tgtggaaaat atggacactg 2100 ggcaaggagc tgcccagaac ctcgaagaca gctcgattat gtaccattgt gtgggaactg 2160 tgggaaaccg ggacatacag tggtaaactg tgatcaacat ccagcacagc agaaacctgc 2220 agtacgtttt agtactgcac ctccagtcac aattccgaag gtggatactc cagtaaattt 2280 ggtctcatgg gaccatacta aaccttcgga agatctggaa atggaatggc ctgaggaatt 2340 tagagatgat cttccgatag aggtcttgaa ggtagagaca tgaaatacta agaaacagaa 2400 gaagaagggc acttcatctt catcttctga atcaccccca ccaaagaaga agagtgaacg 2460 gaagaatatc gaaattccca gtccttccaa gaaggagaca ccgaagcaag ccaccgctag 2520 tccgcatgaa gataagtagc cgactgcttt ccccgcggac atccgagagg aagtccagga 2580 gctcatccag aaggaagtac aagatgaatt ggcacccata gttccgaaaa agaaagtaga 2640 agtaccttct acgaagacca ttcaaaagaa acaagttgtg ccaaattacg acgtagtgga 2700 ggacctgaaa ggccagaagg cgaatgttac cttcggacaa cttctagcag acaacaaacc 2760 atacaggaag ttggttgcat cttctcttcg tcatacgaat gctaaacgga agagaatact 2820 ccctacggta tttcatgtgg aacaagaaga cctgagatca ccagagattg acgtagaaat 2880 tgcagggtgc attttgaagg aagtgccagt agattcagga tctggagtca atatcatgac 2940 agaggagaca gctcatgatt tgggctacca tgatttcgaa accactccta gaatgctgag 3000 actagcagat caaacaagga gaaagccagc aggtattctt cgaaatgtag aaactctaat 3060 aggaggagtg cccttcaaac taacttatat tatcattcgc ccaatagtga aaaagggata 3120 caaggttttg atcggaagac catggttata cggagcaaaa gtaaagacga actggtaccg 3180 tcacgaactg aagttcaagg accttcgagg tccagcacaa aagccaataa tcgtaagttg 3240 gaagaaggtt ccacacctag gagagacccc tccgactgac cagggttaca cgtcgaagac 3300 ttccgaaact tcttcgactg atttgaagga cccttatgat gtaagttatc tgacatgtta 3360 cctagttgat gaggatgagg aagactcagg aaacaaagat cccgagtctg agaaaaatct 3420 ggacttagct cgattgggaa taagttcgac cagtcatgtc gaaggcatcg tcaacccaga 3480 tgattgtctc gacattgatt tgggcgaagg aaagaccttg aaggtttcca aatacgtaac 3540 cccagaagaa cttcaatcat gtggagaaat cttcttaaaa tatcatgata tcttcgcctg 3600 gagcattgag cagatgttag gaattccgaa ggagtatgga gaacatcgaa tcgatttagt 3660 cgagggagca atccctgtac gccagagaca gcgaagagaa aatccaaaat actccatgtt 3720 ggtgaaggat gaaattgaga aatacttgaa ggctgggata attttcccag tactatccag 3780 tgaatgggta tcacctattg tggtagttcc caagaagaat gggaaaattt gggtatgtca 3840 agattttcga aagctaaatt cggtaactaa gaaggaccat caccctcttc ctttcataga 3900 tcaggttttg gaccaggtgg caggacatga atgctattcc tttttagatg gattctcaga 3960 ttataatcaa gtttccattc gagaagaaga taaggataaa accaccttca caaccgactg 4020 gggtaccttt gcatataacc gaatgccctt cggactgtac aacgcacctg caaccttcca 4080 gcgattaatg aataccatct tcaaggactt cctacgaaag tttgtggagg tcttcataga 4140 tgatttctgt atttttggga agagagaaga tcatctgaaa cacctaggaa tcaccttcga 4200 aagatgtagg cagatgcatc tagccttaca tccggagaag tgtttcttct ttatgaaaga 4260 aggtatcctt cttggccaca gggtgtccga gagaggaata gaggtggacc agatgaagat 4320 caaggtcata aaagacttag aaccacctaa gaatattcgt gagttaagag gattcctagg 4380 tcatattggt tactatcgaa ggtttgtaca aagctatgcc actttggctg cgcctttgac 4440 caagttatta aagaaagatc aatactatga ctggactgcg gaacaggaga gagcctactt 4500 agtcctgaag gaagcactga tgaaggcacc agtccttcaa gcaccagact ggaagagacc 4560 ttttcatgtg tacatggata catcctcctt cgcaataggc acaattctca gtcagaaaga 4620 cgaagacggg aaggaccatc cggtttacta cgcaagtcga cagcttaacg ctgctgagaa 4680 gaattacacc accacagaac gggaagcgtt gggaatggtg tactcgtgca gaaaattttg 4740 gacgtacctt cttgggtaca cattcgtgtt tcatgttgat cattctcctc ttcagtattt 4800 agtgaagaag gcggacttat ctagaagaat agccagatgg gtgttactcc ttcaagaatt 4860 tgattataca gtacaggtta agaaggggag tacacatgca aatgcggact atctgtctcg 4920 tcttcaaaca gaagaacaaa aggaagaaat cctggatgat ttcccagatg aagatctgtt 4980 ccagatgacg acgtcgcaga ctatacgata catggatgaa tacaggtatc ttcaaacaat 5040 gcagtgccct gaaggacaag accctgtaca aagatctgtg ttcattcaca aaatgagccc 5100 atatgaactc aagaagggta ttctattcaa gatgggagca gacgaagagc ttcgaagatg 5160 cctagaaagt tgtgaagtgg gaggtgtcat caaagcatta cactcggaag cagctggggg 5220 acactacgca ctaaagaata cagttaagaa gatcttggct gcaggatatt ggtggccgac 5280 catgtataag gacacccatg actatatccg aaggtgtgat gcatgtcaac gagttggaag 5340 gcccacatct tccactcaat ggccattgtg tcctatacta cctttagccc ccttcgagaa 5400 atgggaaatt gactttgtag gccccattca acccgttact caatatactc ggaagcagta 5460 tattttggtt gcaacaaact actcaacgaa gatggttgaa gcggaagcaa ctcggaaaga 5520 cgatgctacg accgttgcgg agttcttctt ccgaaacgtc atttctcgtt atgggtgtcc 5580 gttggaattg gttagcaacc gaggtagtca ctttctcaac tatctgatcg aagtgttgac 5640 agaatatttt caaattcgac acaggaagac cacaccctac aacccgaagg ccaacggttt 5700 aaccaaaaag tccaacggtc ttctgtgtaa gatccttaag aaagtgaccg ttaactacgc 5760 atatgactgg gatgccaaac taccggctgt gctctgggcg taccggattg cggagaagat 5820 aaccacctgc cgaacacctt attatttaac ctacgggatg aatcccattc tcccggttaa 5880 gttcgaagtc cctacccatc gtgtgctgag tgcagatcgc ttgtcagtag aagagagtca 5940 ggaagtgagg ttcttacagc tgacacagtt agaagaaaac agagacgaag caagagattt 6000 caccttggac attcaggaga gaaggaagaa gaaccacgat aacaagatac ggaagataga 6060 tttgaaggac ggagatttag tccttctcta tgacaataga catttcaaat tcccaagcaa 6120 gctacatctt cgatggatgg gcccgtacaa ggtaaccaag atctatgaga atggatcact 6180 ggagcttgaa gatctcgcag gaaatccctt cgctaatcga gtgaatggtt ggagggtgaa 6240 aaagtaccag gggtaacgaa gactgtaatc aggaggtggc aacaaattcg cgaagatccc 6300 tttccggaag ggtattacca agactatctt cgggatgggg agggtacctt cgatcctcgc 6360 aagaacaaaa ccttggaagg cgaacgagca gaagaagatt caggagatag tcgccgccag 6420 aagctctatt ccgaaggcag caggacttgc acaatttctg agtctcgaag atgtgaatga 6480 ttgtgggaat atgtaaggga agaaaaacga gacaaagaaa gataaataga agattccatg 6540 aatagtgttt gcggggtcgc aaacatttga gaaagggggc a 6581 // ID Copia-5_PR-I repbase; DNA; PLN; 5154 BP. XX AC AAQX01002986; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PR_; KW Copia-5_PR-LTR; Copia-5_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5154 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002986; Positions 5300 147. XX CC Positions [1938-2453] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS join(276..4187,4191..5144) FT /product="Copia-5_PR-I_1p" FT /translation="MADTKKEVKESKDERKSIPPFDGKDFEVWLERVRLKL FT QRKQLWQYCEKDVVEPEESKQGDHDDWVTKTSRTKEILYEAMTNQMMKTVK FT YESTPYRVMERLKRRFMGKTYLKYAEESTKLSRLRLDSKGNLPDHLSEMRR FT IMETISVVGRPVDEYAKPAILIGSLPRDYDNVVQTFLASHTTQNPDDPPNY FT EQLEQALEMAYDHTQNRKAEGSKGDEEDKAFFAGGGRGRGRGASRGRGRGR FT GGRGRGFGGRGGANQGGGRGAGRGAGRGQGSVGSKRGDGCFHCHEQEHQVR FT DCPYLGKRPPFETQRGGSANKRSKFNGGDKSAKAGSKGGDDNGSDDNAYVI FT MSLMKLEKKVADIAHDRWYLDSGATSHMTNQKEDFVSFTPVSSTVRTGGKN FT WLEVVGVGTVKKELITSSGRVLVLLRGVRYVPELQCSLFSVGRQASRSLES FT TERVRCHFDDDEYADVLLPSGRTTARRDETNLYRLRLGRPSDAAMMASSEG FT VDKVELWHDRLGHPGRNAFNALFRHTRWPMRRLELRVSNGFSCDTCVKGKL FT TRKSFRNTRSAPTREWLIGERTHIDIWGPYAIDSYSGKRYFAVFVDEASRF FT ATLYLLAERTEVYEKLDIYYQQVKTLLNVRMKEVRNDNAKELSKLAAVCTK FT KYGMECTSSVKHTPEQNGVAERMIRTISERMRCLLNHFRLPEEMWAEAAVT FT ATYCVNIMPNSTRDMEVPYAVWYRELPAYSRLRTFGCAVLAYVDKVERRKM FT QSKAREAIFVGYTSEKRGYRLLDSKTRKAFYSHTAVFYERKAGRIATGSTP FT TLDTTVPVERYLEMDSAAMENIPAILDEMHEDDTEEDADCESVGSSDVHPD FT LPGGADDRSARTGGAKGAVARGDILAGDKRSSKSIKHCETPQKRTWSENDL FT TVSGAAPDDTEHLHIENESEQSSKSKYKKRKRCRGRRKAPTADASLQQDAS FT CGESSIQEGASSSETRAMETAGSETSVHRDGSNTERLQISSCIGLREYVAP FT GAACTKDCPVTRSGRASKPPAWLGDYIYVAYANSNSDEFASSSVSWEKTRE FT EMQRAMAKEQALAWWQDYCCLTMGVINEPETYANAIESEFSVEWKAAAQAE FT YNALIKNFTWELVPRQNNMKVLRNRWVFRVKYKADGEIDRFKARLVIKGFM FT QVYGIDYLEVYSPVVRLETLRVLLTLAAAWDYEIHQMDVTTAFLNGKIDVE FT VYMEQPDGFKVPEKETWVCRLLKSLYGLKQAPRVWFQLLKSFLEEQGFTLL FT KSEACVAVKIIDDQLVFIPLYVDDLILFAPNMNLIKEMKQMFFRFDMKDLG FT ELHYILGWEITRNRSERAVFISQRKYAKLVLERFGMEKCNGCKTPCTADLK FT LAKSMCAADADEKPLMSSKPYRSVVGSLMYLMMGSRPDLAYLVRECSQYLE FT NPGILHWRAAKRGIRYLQETLDWGIRLGGEQWTDQELDRHLEAFADADFAN FT RTDDRKSVAGYLTKFCGSTISWCSQTEKTVALHTTEAEYMALSLLVQEVIH FT LRQMLKELQVQQKAPTEVFVDNESAKKLAVNPAFHSRTKHIDVRHHFIRER FT VDMKEIEVLRVPGSENVADAFTKPLSRAKFEKHREVMGLMPRTKFEQTECS FT GRNQ" XX SQ Sequence 5154 BP; 1384 A; 1084 C; 1502 G; 1184 T; 0 other; gtgaaattgt cctatggagg ttgttcactg catctgacag ttagacatgc gacagttgaa 60 gatattatta ttactagctg ccaacgataa gaactaacgt gagctgcgag ctcattctac 120 caaaacacga ttccttcaca agtagctttt gctacttgct cgctcgtcaa tcgttagcaa 180 gcccagcttt cactctgcgc gcgactgcag gtcgcttcag gttatgagcc caagacctgc 240 gctggtgaag ctcgcttgca actaattaca caagcatggc ggacacaaag aaggaggtga 300 aggagtcgaa ggacgagagg aagtccattc ccccgtttga cggaaaagac tttgaagtgt 360 ggctggagcg tgtcaggctc aagctgcagc gcaagcaact atggcaatac tgtgagaagg 420 acgtcgtgga gcctgaagaa agtaagcaag gtgaccatga cgactgggtg accaagacgt 480 cgcggacgaa ggagattttg tacgaggcga tgactaatca aatgatgaaa actgtgaaat 540 acgagtcgac tccgtaccgt gtgatggaac gtttgaaacg gcgtttcatg ggcaaaactt 600 acttgaaata cgccgaggag agtacgaagt tgagtcgcct tcgattggat tcaaagggca 660 atcttcctga ccacctgagt gaaatgcgtc gtatcatgga gacaatttcg gtggtcggca 720 gacctgtcga tgaatatgcc aaaccggcta tcctgattgg ctccttaccg cgtgattatg 780 acaatgtggt tcaaacattt cttgcgagcc acaccacgca aaacccggat gacccaccga 840 attatgagca gctggagcaa gcgctggaga tggcttacga tcacacacag aacaggaagg 900 cggaaggcag caagggcgat gaagaagaca aggcgttctt tgctggcgga ggccgtggtc 960 gtgggcgagg agcaagccgt ggccgaggac gtggacgcgg tggtcgtgga cgaggctttg 1020 gaggccgcgg aggagcaaat caaggaggtg gtcgcggtgc tggtcgcggt gctggtcgcg 1080 gtcaaggcag cgttggttcg aagcgtggtg acggatgctt tcactgtcac gaacaagagc 1140 accaagtgcg cgattgtccg tatctgggca agcgccctcc gttcgagacc cagcgtggag 1200 gctctgcaaa caagcgcagt aagttcaatg gaggagacaa aagtgccaag gccggcagta 1260 aaggtggaga tgataatgga agtgatgaca acgcctatgt gattatgagt ttgatgaaat 1320 tggagaaaaa ggtggctgat attgctcatg accgctggta tctggactca ggggctacta 1380 gtcacatgac gaaccaaaaa gaagattttg tgtcgtttac tcctgtaagt tcgacagtgc 1440 gtactggtgg caagaattgg ctggaagtcg ttggcgttgg aacagttaag aaagaactga 1500 tcacgtccag tggcagagtt ttggtattgc tgcgtggggt acgatacgtc ccggaattac 1560 agtgcagctt gttttcggtg gggagacaag cttcacgatc gcttgagtct acagaacgag 1620 tgcgatgcca ttttgatgat gatgaatatg cagatgtact tcttccgtca ggccgcacta 1680 ccgctcgcag agacgaaacc aatctctatc gcttgagact ggggaggcca tcagatgcag 1740 cgatgatggc atcgtctgaa ggagttgaca aggttgaact gtggcatgat cgtcttgggc 1800 atcccgggcg aaacgcgttc aacgcacttt ttcgacacac acgttggcca atgaggagac 1860 tggaacttcg cgtttccaat gggttcagtt gcgatacgtg tgtgaagggc aagttgaccc 1920 ggaaaagttt tcgcaacacc cgtagtgcac caacacgtga gtggttaatc ggagagcgta 1980 ctcatattga tatttggggg ccatatgcga tcgattctta ctctggcaag cgatactttg 2040 ccgtgttcgt cgacgaagcc agtcgatttg caacactcta tcttttggct gagcgcacag 2100 aagtctacga aaaactggac atctactatc aacaagtgaa aactctgttg aatgtgcgca 2160 tgaaagaagt tcgcaacgac aacgcgaagg aattgtctaa gctggcggca gtttgtacaa 2220 agaagtacgg catggagtgc acgtccagcg tcaaacacac acccgaacaa aatggtgtgg 2280 cggagcgaat gattaggaca atatccgagc gaatgagatg cctattgaat cattttcggt 2340 tgccggagga gatgtgggca gaggctgctg tgacagcaac ttactgtgtc aatattatgc 2400 caaactcgac aagagacatg gaggttcctt acgcggtgtg gtaccgcgaa ttgccggcgt 2460 actcgcggtt acgcacattt ggctgcgctg tgttggctta cgtggacaaa gttgagcggc 2520 gcaagatgca gtccaaggct cgtgaagcca tctttgtggg ctacactagt gaaaagcgtg 2580 gctaccgtct gcttgatagc aagacgcgga aggcttttta cagtcatact gctgtcttct 2640 atgagaggaa ggcaggtcgg atagcaacgg gttcgacgcc caccttggac actacagtgc 2700 ctgtcgaacg atatcttgaa atggacagtg ctgccatgga gaacatccca gctattcttg 2760 atgaaatgca tgaagatgat acagaggagg atgcagattg cgaatctgtt ggctcgagtg 2820 acgtacaccc agacctgcca ggtggggcag atgatagaag tgccaggact ggtggggcta 2880 aaggtgcagt tgctagagga gatattttgg ctggagacaa acgaagctcg aagagtatta 2940 aacattgtga gactcctcaa aagcggacgt ggtccgagaa tgacttgaca gtgagcggtg 3000 ctgctccgga tgacactgag cacctgcaca ttgagaatga aagtgaacaa agttcaaagt 3060 caaaatacaa gaagagaaag cgatgcaggg ggcggcgcaa ggcaccgact gcagacgctt 3120 cgttgcaaca agacgcatca tgtggagagt cgtcaatcca ggagggggct tcgtcttcgg 3180 agactcgcgc gatggagacc gcgggctcgg agacgtcagt gcatcgtgat ggatctaaca 3240 cggagcgttt acaaatctca tcgtgcatag gtctacgcga gtacgtagcc ccaggtgctg 3300 catgcactaa ggactgcccg gtaactcgga gtggtcgtgc gagcaaacct ccggcatggc 3360 ttggcgatta tatctatgtt gcatacgcca actcgaactc agatgaattt gcaagttcat 3420 ccgtatcatg ggagaagact cgtgaagaga tgcagcgtgc aatggcgaag gaacaagcac 3480 ttgcatggtg gcaggattac tgctgcctga ccatgggtgt aattaatgaa cctgagacgt 3540 acgccaatgc tattgagagt gagttttccg tggagtggaa agctgctgca caagcagagt 3600 acaatgcttt gataaagaat ttcacatggg agctggttcc acgtcaaaat aacatgaaag 3660 ttctgcgcaa tcgctgggtg ttccgtgtca agtacaaggc agacggagaa attgataggt 3720 tcaaagcgag gctggtgata aaaggcttca tgcaagtcta tggaattgat tacctagaag 3780 tttactcgcc ggtcgtgcgt ttggagactc tgcgtgtgct gttgactctg gcagcggcgt 3840 gggattatga aatccaccaa atggatgtga ctactgcctt tttaaatggg aagatcgacg 3900 tggaggtgta tatggagcaa cctgatggct tcaaggtgcc cgaaaaagag acttgggtat 3960 gccgcttgtt gaagagtttg tatggcttga agcaggcgcc acgcgtctgg tttcagctcc 4020 tgaaatcatt tctcgaagaa caaggattca cgttgttgaa atcggaagcc tgtgttgctg 4080 tgaaaattat tgatgatcaa ttggtcttta tcccgttata cgtcgatgat ctcatcctgt 4140 tcgctcccaa tatgaacctc atcaaggaga tgaagcaaat gtttttttag agatttgaca 4200 tgaaggatct cggggagctg cattacatcc taggctggga gatcactcgc aatcgaagtg 4260 agcgagctgt cttcatcagt cagcgcaagt acgcaaagtt agtgctagag cgctttggga 4320 tggagaaatg taatggatgc aagacaccgt gcacagcaga cttgaaattg gcgaagagca 4380 tgtgtgcagc ggacgcagac gagaagccgt tgatgtcttc caaaccatat cgatctgtag 4440 taggaagctt aatgtaccta atgatgggct cgcgccctga tttagcctat ttagttcgag 4500 aatgcagtca gtatttggaa aatccaggta tactgcattg gcgagctgcc aaacgcggca 4560 ttcgatatct ccaggagaca cttgattggg gtattcggct tggcggagag cagtggactg 4620 atcaggaact tgatcgacat ttggaggctt tcgctgacgc tgatttcgcg aatcgaacgg 4680 atgataggaa atctgttgct ggttacttga caaaattttg cgggagcaca atctcgtggt 4740 gcagtcaaac tgagaagacg gtggctttgc acacaacgga ggccgagtac atggctttga 4800 gcctgctcgt gcaagaagta atccatcttc gtcagatgtt gaaagaacta caagtgcagc 4860 aaaaggcacc cactgaagtg ttcgtggata atgaaagtgc caagaagtta gcagtcaatc 4920 cagcatttca cagccgaacg aagcatattg atgtgcggca tcacttcatc cgggagcgag 4980 tagatatgaa ggagattgaa gtattacgag tgcctggcag cgaaaatgtc gccgatgcct 5040 ttaccaagcc tctctcaaga gccaagtttg agaaacacag agaggtcatg gggctaatgc 5100 cgagaacgaa gtttgagcag acagagtgca gcggcagaaa ccagtaggtg gggc 5154 // ID DNA-TA-2N_PPa repbase; DNA; PLN; 588 BP. XX AC . XX DT 15-DEC-2009 (Rel. 15.07, Created) DT 15-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW DNA-TA-2N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-588 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1019-1019 (2010). XX DR [1] (Consensus) XX CC TIR is 16-bp long. XX SQ Sequence 588 BP; 159 A; 106 C; 126 G; 197 T; 0 other; aggtagccga cccattctca accaccctat ttccaaccta tagggtgggg tatttctgca 60 agtttggcat cctatttatg accagttttg acacccttct ggttggaaat aggtccagtg 120 cttgttaagt ttacaatgtt tttgatcata gaaaagtgtc gcaagatgga gtgggtgtgt 180 tccaatttag gtggcaattg ttgattggtt ggggtggaat tcaagttcag caggagctgg 240 ttgaattctg gttacctcat ccacacatta acatccatag gtagcacaaa attaggtgaa 300 gcttgatagc ataattaggt gccacacttc ttgattatgg aaaaggagga ttctcaattt 360 tgtaacccac cactgattgg aattaggttg gcctatatgt cagatttgga tcaaagagaa 420 tcttcagcta aaacatttat ataaattcta tttttgggcc aaattgtgtg aaaacacctg 480 gaatcctcct gatttctatt tccctacatg gggatatttt tctttcattt ttacacttac 540 tgcatatatg ctgaaatgct taagttatcg gaaatgggtc ggctacct 588 // ID IFG7_LTR repbase; DNA; PLN; 331 BP. XX AC AJ004945; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus radiata gypsy-type retrotransposon IFG7_LTR, long terminal DE repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; IFG7_LTR; Long terminal repeat; KW retrotransposon. XX OS Pinus radiata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-331 RA Kossack S.D. and Kinlaw S.C.; RT "IFG, a gypsy-like retrotransposon in Pinus (Pinaceae), has an RT extensive history in pines."; RL Plant Mol. Biol 39(3), 417-426 (1999). XX DR Genbank; AJ004945; Positions 1 331. XX SQ Sequence 331 BP; 79 A; 59 C; 57 G; 136 T; 0 other; tgttaggtcc ttataatact agtgattacc ccattacttt ttagttgtat cccttattaa 60 tattgttgtg cccctattgt ccccatattg ttattactgt gccccataga atccctctat 120 tgttattttt gtggctttat attattattg ttaggtcggc tgggttatat tgtgactcct 180 tagactccta tatatagaaa cgaggttttg tcatttgaat catccaagaa ttgttcattt 240 gtgcaatgta aaggaggttg ccccctcgaa ggattgaatc ataaggcgtt caactatatt 300 ttctatcttt ttgtgagcta gtttcataac a 331 // ID Copia2-LTR_VC repbase; DNA; PLN; 177 BP. XX AC . XX DT 14-MAR-2010 (Rel. 15.03, Created) DT 14-MAR-2010 (Rel. 15.03, Last updated, Version 2) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia2-VC; KW Copia2-LTR_VC; Copia2-I_VC. XX NM L1A_Mim; LTR6_MD; LTR86_MD. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-177 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 126-126 (2008). XX RN [2] RP 1-177 RA Jurka J.; RT "Consensus."; RL Direct Submission to Repbase Update (14-MAR-2010). XX DR [2] (Consensus) XX CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 177 BP; 36 A; 44 C; 51 G; 46 T; 0 other; tgttggctta gacgcgacgg agcgaagcga ccggagcttc taaggctggt tctgtggtac 60 tgtcgtacaa ctggttcgca gtggcgactt aattctcgct gctctcctgg tgaagtcatt 120 ctgccttcac gcagaagagc atacagcctt gtccaatagt cagcgtgaca ggctgta 177 // ID Copia-1_CMe-I repbase; DNA; PLN; 5480 BP. XX AC AP006495; XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Cyanidioschyzon merolae genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_CMe_; KW Copia-1_CMe-LTR; Copia-1_CMe-I. XX OS Cyanidioschyzon merolae OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; OC Cyanidioschyzon. XX RN [1] RP 1-5480 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Cyanidioschyzon merolae genome."; RL Direct Submission to RU (03-MAR-2011). XX DR Genome; AP006495; Positions 213143 218622. XX CC 'ATACA' target site duplication CC LTRs are 92% similar to each other. XX FH Key Location/Qualifiers FT CDS 2894..4639 FT /product="Copia-1_CMe-I_1p" FT /translation="MSTSQVIDYIIRKLIEAYENDEAVSLDRLKLEAAKHF FT GVNGVPKLMDIVAAVPDEYRDVLVPQLRVKPVRSSSGIIIVAVMSKPHRCP FT HIYTTGSVCIYCPGGPDSSFPYSAQSYTGLEPTSMRAIRARYDPYLQVRSR FT IDQLQSLGHAADKVEFIIQGGTFMSLPADYRDWFIRNLHDALSGHASMSVA FT EAVRYGEQSARYKCIGLTIETRPDFCQRTHLDAMLQYGCTRLEIGVQSVYE FT DIARLTNRGHTVEAVIRCFQLAKDAGYKVVAHLMPNLPDMDRERDVECFRE FT FFENPAFRADGLKIYPTLILANTGLYELWRAGKYRSMPPPELVDHVAELLS FT LVPPWVRVYRVQRDIPMPLVTSGVQFGNLRELVLARMRDLGLRCRDVRTRE FT VGIREIHEAVRPQSIELVRRDYVANGSWETFLAYEDPVRDILVALLRLRRL FT SKETTHRMELRIEDTAAGDDSSNSGVGQGTGCSVVRELHVYGTVVPVHERD FT PTRFQHRGFGTLLMEEAERIAREEHRSCKLAVISGIGTRNYYRKLGYTLEG FT PYMVKYLAAGTAKVSPSGMSSCMGEQIRADMAVSV" XX SQ Sequence 5480 BP; 1163 A; 1535 C; 1512 G; 1270 T; 0 other; tttacgtccg aagctgtggg tctcaatatg gttttccagt agcgatgact gccagggttg 60 gtttgcggtg caaaccaagg ttcctgagct taacttgaat gcttctagcg agcgcactgg 120 tttattgttg ctctcgcgag aggctggcgc gccttgtatg aacctcaaac gctctatgtt 180 tccgaccaac ggcacttgtc tcagaacctg ctgattacct cggcaccgct tcccgtacac 240 aagccttcaa agcacattat taaaggattc atgatagatg cttttccagg aaactgtcgt 300 gcggttgtct acccgatgtt ggagcaatag ctagtgcccc cattgtatga gcgtgaagcg 360 cgctcagcag gttcctatgc gttgcgcgtc acctttcctt gcctgtatga tagcgccgcc 420 cctacatatg ttcctacgct gggtgcacgg agtattctat atgaccgagc gagcgtggag 480 ccaaagcgca attggcaatc gaagatgttc agcatagcga gtacccgaag tcgccataca 540 gtgacctgtc tatagaaaac acaacttgaa ggacagctat cgaccacgac gtcgcctttc 600 gggacgtcgg cgactggtgg agcgctttct tacttttggc ggccgctgcg tgaagtcatc 660 atcatcatcg tcgtcgtcgt ggtcgtcgtg gtcgtcgtct acattgttac cgtcttcgac 720 gttgtcatca gcatcgtcgt catggatcct accagggacg tcttcactgc ctattgcctc 780 gtcttccgcg ggttcatttc catcactgat cctttctgtt ggcaaccgca gtgaaactgg 840 gcggccttca tgctgctccg gctcttgaat gacgccctgg tcatggaaac cagtctgcat 900 gcccgatacg ggacgctgct ccactgacgc ttcggggcct tcgtcgggtc ttccgggaaa 960 ccaccgccct tcccgcggaa cattttcggg ctccacagaa gcactcgtct ttgtgagctg 1020 gccgccctca tttttgccag aggaagctcg aggaccagga cgcagagtgt ccgttcccgc 1080 agagccgtta tcctcatcca gatgattccc tgttgctgca gcattcctgg ggagctgctc 1140 cgagctctcg ttcacggttc gggcgctggc ctggcggagt cgcactgcgg cgacgcggga 1200 actttgccgt cccccaccac cccaacattt ctccagatgc tgcgcatacc gagcggctga 1260 aacagaactt ttgcaatgaa aacagacgag gacaccctca cgggctgctt gccgagcctg 1320 cgtacatcca ttcaaaggcg tttctacggt atcttcatcc aacaggctag tcatgcgaag 1380 cgcttcgaag agcggactgt ggatgcgtgc tcgatcattg gtgcgtagaa tgcgcgagaa 1440 gtactcctct cgaaaagctt cctcacaagc ttcacggaag atcgcatccg tcaagaggtt 1500 gtacacgtgc agcacacagg agagctgctc tagcatggac agccatgcag gcctatcagg 1560 ttgtggagcc cggctttggt cggcatccgc aacactttcc caagtgctcg caggtgcgtt 1620 cccagcactg gcgaggtcct gcttctgctt ctcgtctgaa ttggtgacca gcggcatcgg 1680 atgcggctca gtcacctctt cacaatccat gatggcagag cttgtccagg gctttcgttg 1740 tttgcaggct cggagcagct gctgcagcaa gtgcaggtcc tgcacgcgct ctttttcaac 1800 ggaggatacg cgccgcggcg actggtcgac ggcctcgtct tcacggcggc taccatctcg 1860 agactgtgtc gtcacaccga gtccaccagg agtgtggtcc tcttcgacgg aaacgcctcc 1920 gtgcttgttc gtaggatgct gcttgtgtcg gcgggtgcgc cgttctggca ctaccggcgg 1980 ctccgaggcc ggcgtctcgt cggagcgccc gggactggat gcctcagcga ggaccgagga 2040 ggtatctgct gagggcgaag gcgagcgcgt ctcatccttg gctgattgag cgctagctgc 2100 gtcgctctct agcagcaaac ggcctcgttt tgggcgaacg cgagaaccac gacttaggcc 2160 cgttgcacgg gcacccaatc taccccgcgg catgctcgca gttgttcata agacagaagg 2220 agttccccgt ataaacgccc caaaaccgtt gttcaagaaa atacaagagc gttctttgcg 2280 ctgaggtagc acgaatgtgc ctagtccggc gagaggcgcg ctgcctgcgg gaacctctga 2340 cctcaagcca atagcagcag cagcagctgg ggctttacga gacacctggg tctttcgtgt 2400 acaggagtgt ccaacgtcca gatcaaagat tcgcttctta ttcgtatacc gggcgactcg 2460 tccgcgaact ttctcaaacg caaagcttga gagtacgcgt caagtcgcag ggctaagtgc 2520 cggagcgccc ggcagaaagc gcttgtacct cgagccacag accggttgcc actccctttc 2580 ttttcgcttg accagcgact attcctcagc accgacctgc agatcctgaa atcacttata 2640 cccaaacgca aggtgcgcaa gaaaagtgct ctccacagtg gagctgcggt acagccaaag 2700 agctatggaa gcggtatgga cgggcgcgtc ctgctctgag gcagtcgagc agagccacgg 2760 gctctacaac gtgcacctgt ctgaacgttg atatccgctt ttccggagct gtgttgttac 2820 tgcgtccttc tggtgccatt aaacgcttgt aaaccagcga ggagacgttg ttctcgcttc 2880 gaaactcttt actatgagta caagtcaagt catcgactac atcattcgca agctcattga 2940 agcctacgaa aacgacgagg ccgtttcgct ggatcggtta aaactagaag ctgcaaagca 3000 tttcggtgtt aatggagtac caaagctcat ggacatagtg gctgctgtgc cagacgaata 3060 ccgcgacgta ctcgttccac agctgcgcgt caagccggta cgctcgtcgt cgggaatcat 3120 catcgttgcc gtgatgtcga agccgcaccg ttgccctcac atctacacga ccggcagcgt 3180 ctgtatttac tgtccagggg gtcccgactc gtctttcccg tactctgctc agtcctatac 3240 tgggttagag ccgacgagta tgcgagcgat tagggcgcgt tacgatccct accttcaggt 3300 acgctctagg atcgatcagt tgcaatcgct tggtcacgca gctgacaaag tggagtttat 3360 cattcaaggc ggtacgttca tgagtttgcc tgcagactac cgggattggt ttattcgtaa 3420 ccttcacgac gcgctctcgg gacacgcgtc catgagtgtt gccgaggcgg tccgctacgg 3480 cgagcagagc gccagataca agtgcatagg gctcaccata gagactcgtc cagacttttg 3540 ccaacgaaca catctagacg cgatgctgca atacggttgc acccgtctag aaataggggt 3600 gcagagcgtc tacgaggata tcgcgagact gaccaatcgg ggtcacacgg ttgaggccgt 3660 cattcgctgc ttccagctcg ccaaggatgc cggttacaaa gttgtcgccc acctgatgcc 3720 aaacctcccg gatatggatc gagagcgtga tgtcgagtgc ttccgggagt tcttcgagaa 3780 cccggccttt cgcgccgatg gtctgaaaat atatccgacg ctgatcctgg caaacacggg 3840 cctctatgag ctgtggcgag cgggaaaata tcgcagtatg ccacctcctg agcttgttga 3900 tcacgttgcg gagctcttgt ctctagtacc accatgggta cgagtctacc gcgtccagcg 3960 tgatattccg atgccgctgg tcaccagcgg tgtacagttt ggcaaccttc gggaactggt 4020 gttagcacga atgcgcgacc tgggactacg ttgtcgagac gtgcggactc gtgaagttgg 4080 tatccgggaa atccatgaag cagttcgacc gcaatctatt gaacttgttc ggcgcgatta 4140 tgtggcgaat ggtagctggg agaccttctt ggcctacgaa gatccggtac gggatatttt 4200 ggtagcactg cttcgactgc ggcgcctcag caaagagaca acgcatcgga tggaactgcg 4260 tattgaagac acagctgccg gggatgattc gagcaatagt ggcgttgggc aaggcaccgg 4320 ttgctctgtg gtgcgcgagc tccacgtcta cgggacagtg gtgcccgttc acgaacgaga 4380 cccgactcga tttcagcatc ggggcttcgg tacgctcctc atggaagaag cggagcggat 4440 cgctcgcgaa gagcatcgca gctgcaagct cgcggttatc tctggcattg gcactcgaaa 4500 ctattatcgc aaactgggtt acacactcga agggccctat atggtgaagt acttggcagc 4560 gggtactgcg aaggtctcgc ccagcggtat gtccagttgt atgggcgaac agatacgcgc 4620 agatatggct gtttccgtgt aggttcctct atctgctggc tgtggagcgt ggagataacc 4680 ccaggccatg ccagacgaca gcttccgttc accaaatcag cgtggatgct gggaaggctc 4740 cacgctacat ctacggtcaa gcggtgcacc ttggatgcat ccaaggtggt attagacaat 4800 agtatcccat cattagctcc gagcatatcc agggaagctt tgagcgcagc atgcgaagcc 4860 cagctcctgc gttgtaaagg cgctgctcgc tagaaacatt ttgtttccag cttctcatgc 4920 agatacaggt gaaactggtt ttctaaatgg tgtcatccat cggcagtgag tgactgaagc 4980 acacatgact cctgtgccga ctggacgagg tcaagcgctc ggtacctatt gagctgggga 5040 cgacgcatct gcctggattc attttctgca gaaccgcgat gctgtgatga ggcgttccca 5100 tcgagacaag gacatcgtgc acggcaggcg cctagcttct tctgcttcca atatagcgca 5160 tctccgcaca ttgcatcgct ggaatataaa ctgctcatct agaatttatg cggcaaaact 5220 tgcaacgccc agttctccgc gtcagaacat gtacgttttg cgtgcctcat cgcaacgctc 5280 acgaaaagta ccatgttcag cagtcgctgc agaggcctgc ccgcagtgcg ccctccgccc 5340 tagttcggta agtggctgca ttcgagcgag tcgtcatctg tgccgaaacc gcatgaagga 5400 tgcgcagacc ctacgagaag tttttctatc caatggaacg catgaaaaca tgcgccctcg 5460 acccccatat cagacataca 5480 // ID Gypsy-6_PSo-I repbase; DNA; PLN; 4850 BP. XX AC AAQY01000363; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PSo_; KW Gypsy-6_PSo-LTR; Gypsy-6_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4850 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000363; Positions 59797 64646. XX CC Positions [3598-4113] - Integrase core CC 'GTCGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1207..2160,2164..4410) FT /product="Gypsy-6_PSo-I_1p" FT /translation="MSMMVYGQFVKACPEAEQAVRLEEPLTCKGADGKPIE FT VKMTVNLHLKLTTAAGSVRIAKPVECLVIPGDSTEFLLGIDLLTMLGIDVL FT RQLDMLVANAMRGERDDEFDDVDEPQVGSSAGLSDEVLAAVEKMIERAVEK FT GFPTELVPALRRIATRFDLWRFRLGDDPPARVPPMKIRLRPGAKPYRCKAR FT KYPPEVRKFLNEFNDKLVRLGWVYENTESRWACPALPVRKSGGEFRQTSDY FT KPVNADIEAIVGVMPDLHVDLESVKGAQFFGLFDFIKGYWQLALAEECQEW FT LSYMTHRKVYTPRRVPQGCTDAALFFSTVQKCLEELLHKHLLVWIDNLLLY FT AQDASTYLVKLERLFELLDFFGFKLSPKKSSLFEREVRWCGKLINGDGVQH FT DPERIRALQAMPYPRSAGELQQLLCATNWMRDSLIDYARVARPLQDTLDDA FT LSRASKRTKRVAAGVAIELNASQRQAFDEMKEMLSRSVTLAHPKDGATMCV FT LTDASDIGWSLLVTQVEHWQPKKEVSEQAHEMLICLSGTFTGSQRNWSIIE FT KEAYPIVCACDKLSYLLLRPGGFKLYCDHRNLIYVFAPGQEVKKHIRGKLL FT RWATKLMEYHYEIEHIDGEANVWADMISRWAGDHDPSVRLNVMKLRKRSRD FT EPHAEGKRRRKRTRRGAKKHGLVVEQQQEVPTSQQYILRPLDDPDFEWPTW FT TAIRAEQLQHAASRPNNATGDDEKGWYIGEKVWIPVKASGIIQRMLVVAHC FT GSQGHRGRDAMLTSLRRLFLIDRLRARVDTFLSNCLMRRHVKGGKVIQRPW FT GETYRNNTRNGALHFDFLRLGDTFAGDRYLLVLKDEATHFTELTPCADPTS FT TVAVEAILAWHSRFGVPPVWISDQGSHFTSEVVAEVCRSLKASHDFTVAYS FT PWINGSVERANRDIIQVLRALCLEYKVDTHDWTYFVPVLQASLNHTPVPSL FT GNRAPVELFCGLPPAMPLTFYIDIKQRQVVEIPMQTTATTKWLEELRTGIR FT EMHKPMTVARAQQTVRNQQMQKRACRPNFDIGDYVLRSRVDQKYYDKLLVT FT WGGGVSGGAS" XX SQ Sequence 4850 BP; 1219 A; 1174 C; 1503 G; 954 T; 0 other; aagaattctt tagttgcgag gtctcgcgac tgaacggaag gaccaggaga agatcaagat 60 ggggttcacg tctagcgacg ccgagtgtac ccacggccac tcggccggag agcgcaccga 120 cgctgaggca gggctgcaga tggatactgg gggtggggca agttcgacag gcacgtctcg 180 tgtcccgcag ccaattttct cttttgtctt ggcgccaagg gtgtcttcta ttgctcgtaa 240 cgagttggta gagtggctga agcttcgcaa ggagtacgaa gaggcggtga aggagcgctg 300 caaggacggc aaggaggaca tcaaggcggt gctgaagagc atcaagaact cgtttgacga 360 cgacttgctg gagacgctgt gtgaggtgaa ttggggcgtc gcgaaggacg acctgactga 420 tgagtttctg ctggagcaga ttcacgccat caccgacagc taccagaacc gagctgttcc 480 agaaggagct gcgcatggat atgaacaaca aggacatcac tgcgcgtgtg accaactact 540 tcatgtcgtg caacactttg atcaagaagt atgggttcac gagtttcttc gaggaggaga 600 agggcacgaa gaagaagtgc aagctgctcg tgaactcgct gcccgccacg ctcaaggata 660 aagtgaagaa tgaaattgac taccgtttcc cggaagcgca gagcaacgtg atgaaattgt 720 acaagctcat ttgtcagcag gcgctggagg aagctattga gcaccgcgcg ctggcgagag 780 aaaagaattc gagccgtaag cagaaattaa gggatcagcc tcagccattt cggaagaaca 840 agcgcgtgca cactgggcaa cagcaaaaat cggacaaaca gcaaaggaag gtggtgcagc 900 cggttgcagc gagcacagac gacaaaaaca agaaaggcca agccggtccc aaaggagcgc 960 cgagggctgg ttgcttcaac tgtggagggc cccactacct cagtgcatgt cccaccgcta 1020 ccaaggagga ccgtgaacgc cttgcagcct ccaagcagag caagaaaggc ggccagcccc 1080 ccgcggggag gcaccgctaa tctcaggaga cttgcagatt gcctgccagc acaaacacgc 1140 tcaattgtgc tggaagacgc tttcaaagtg gctttctgtg ctgacagcgg cgcagacagg 1200 tctggaatga gtatgatggt gtatggacaa ttcgtgaagg cgtgtccgga ggcggaacaa 1260 gctgtgaggc tggaggaacc actcacatgc aagggtgctg acggcaagcc aattgaagtg 1320 aaaatgacgg ttaatttgca tctcaagttg acaacagcgg ctggcagtgt acgcatcgcc 1380 aaaccagttg agtgcctggt cattcctggt gatagcactg aattcctcct tggcatcgat 1440 ctgttgacca tgttagggat agatgtgctg aggcagttgg acatgctagt ggctaatgca 1500 atgcgaggtg aacgggatga tgaatttgat gatgtggacg aaccacaggt cggctcaagt 1560 gctggattga gcgacgaggt actggctgca gttgagaaaa tgattgagcg cgctgtagaa 1620 aaaggtttcc cgacagaact ggtgcctgca ctccgcagga ttgcgactcg atttgactta 1680 tggagattcc ggctaggcga tgatcctcca gcccgagtgc ctccgatgaa gatccggctc 1740 aggcctggcg ccaaacccta tcggtgcaag gcccggaagt acccgcccga ggtccgcaag 1800 ttcctgaacg agtttaacga taaactagtc cggttgggct gggtatatga gaacacggag 1860 agtcggtggg cttgccccgc tcttcctgtg cgcaaaagtg gtggagaatt tcgacagacg 1920 tcggactaca agccggtaaa tgcagacatt gaagcgattg tcggggtgat gccggatttg 1980 cacgttgacc tcgaaagcgt gaaaggagct cagtttttcg gcttgtttga ttttattaag 2040 ggctattggc agcttgcact ggccgaggag tgtcaggagt ggctctctta catgacgcac 2100 cgcaaagtgt acaccccgcg ccgtgtacca cagggatgca cggacgcagc gctgttcttc 2160 tagtcgacgg tccagaagtg cctggaggag ctgctccaca agcacttgct cgtttggatc 2220 gacaatctgc tcctgtacgc gcaagatgcc agcacctacc tcgtgaagct ggagcggttg 2280 ttcgagctgc tcgatttctt cggctttaag ctgagcccga agaagtccag cctgttcgag 2340 cgggaggttc ggtggtgcgg caagctgatt aatggagatg gagtgcagca tgacccggaa 2400 cgcatccgag cgttgcaagc catgccgtac ccgcggtcag caggagaact gcaacaactt 2460 ttgtgcgcta cgaattggat gagagactcg cttatcgact acgcaagagt ggcgcgaccg 2520 ctgcaggaca cgctggacga cgcactgtcg cgtgcttcca agcggacgaa gcgggtagca 2580 gcaggtgttg cgattgagct gaacgcttca cagcgtcagg ctttcgatga aatgaaagag 2640 atgctatcca gaagtgtgac tttggctcat ccgaaggacg gagcgacaat gtgtgtgctt 2700 acagacgcct cggatattgg ttggagtctg ctggtgaccc aagttgagca ctggcaacca 2760 aagaaggagg tgtcggagca agcgcacgag atgcttatct gtttgagcgg cacgttcaca 2820 ggatcacagc gcaactggag tatcatagag aaggaagcat atcctattgt gtgcgcatgt 2880 gacaagctga gctacttgct gctccgcccg ggtggtttca agctctattg cgatcatcgc 2940 aacctgatct acgtgttcgc gccaggtcag gaagtgaaga agcacatccg aggcaaactc 3000 ctgaggtggg cgacaaagtt gatggagtat cactacgaga ttgaacatat tgacggggag 3060 gcgaacgtat gggcggatat gatctctcgg tgggccggag accacgatcc atctgtgcga 3120 ctgaatgtga tgaagctgcg taagcgcagc agggacgagc ctcacgcaga aggcaagcgg 3180 cggcgtaaaa gaactcgccg aggcgccaag aagcacgggt tggtggtgga acagcaacag 3240 gaagtgccca cctcgcagca gtacatactg aggccgctgg acgaccccga ctttgagtgg 3300 ccaacctgga cggctattcg ggctgaacaa ttacagcatg cagccagtcg accgaacaat 3360 gcgacgggcg atgatgaaaa gggctggtac attggcgaga aagtctggat acccgtgaag 3420 gccagtggga ttattcagcg gatgctggtt gtggcgcact gcggttcgca gggacaccgc 3480 ggtcgcgacg ccatgctgac gtccctgaga cggctatttc tcattgaccg attgcgtgcc 3540 cgtgtggaca cgttcctgtc gaactgtcta atgcgcagac acgtgaaagg aggcaaggtt 3600 attcagcgcc cgtggggaga gacatatcga aacaatactc gcaacggcgc gttgcacttc 3660 gacttcctac gtttggggga cacttttgcc ggagatcgct atctgttggt actcaaagat 3720 gaggccaccc atttcactga gctgacacca tgtgcagacc cgactagcac ggtggcagtc 3780 gaggcgatac tggcgtggca cagcaggttt ggcgttccgc cggtgtggat aagtgatcag 3840 ggctcccatt ttacgagcga agtcgtcgca gaggtgtgca gaagtttgaa ggccagccat 3900 gacttcacgg tggcatacag tccgtggata aatggaagtg tggaacgtgc gaatagggac 3960 atcatccaag tcctacgtgc tctctgtctc gagtacaagg tggatacgca tgactggacg 4020 tactttgtgc cggtcctcca agcaagtcta aaccacacac ccgttccatc actagggaat 4080 cgggcacctg tggagctatt ctgtggacta cctcccgcga tgccgctgac gttctacatc 4140 gacatcaagc aacggcaagt ggtggaaata ccaatgcaga cgacagccac cacgaagtgg 4200 ctagaggaat tgaggaccgg cattcgtgag atgcacaagc ccatgacggt ggcgcgcgca 4260 caacagaccg tgcgaaatca acaaatgcaa aagcgtgcgt gtcgaccgaa cttcgacatc 4320 ggcgactacg tgctcaggtc gagggtcgac cagaagtact acgacaaact gttggtcacc 4380 tggggggggg gcgtatcagg tggtgcgagc tgacaagcac tcattcggtg tccgacattt 4440 gctgacaggg gaggagatgg acgtccaccc gtcacggctt aagttttacg cggacagctc 4500 gctggaggtt acagaggatc tacgagagca cattggggca caaggcctgg tgctgacggt 4560 gtcaaagctg aacggctacc gttggagccg cgaatagaag gactatgaag tactggtcag 4620 ctggaggggc ctcgaaccga tcgaagactc gtgggaaccg actcagcagc tacgcaagga 4680 cattccggtg ttactaaaac agtatgcagc ggacacaaac gacccgaaat tcgtgcagca 4740 cgtgaacaga gacggcaagg gcaaggcacg aaagaagtaa tctataacac ggatcgtgca 4800 acatgacaag ctacagaggc caagagagtg gtcaaggctt gggagggcag 4850 // ID Copia-30_PIT-LTR repbase; DNA; PLN; 362 BP. XX AC AATU01002123; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-30_PIT_; KW Copia-30_PIT-I; Copia-30_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-362 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002123; Positions 330971 330610. XX SQ Sequence 362 BP; 88 A; 97 C; 96 G; 81 T; 0 other; tgttggagcg tcaacgtcgt tgacatcgac gaacagatct agtgtcatca gggagaatct 60 ggtacgtact actcgttggc ccactgtgtc aagtggacac aggtcacagt gcgatgaaca 120 cgggcgacag agtggctcca gcactagcga catcaatggg agcgacgtgg gtatttcgac 180 gtgagcgatg agaaggcttg ggcatgcggc tcggtcaaag gggactccgt ctgcatgtag 240 tgtcagttag ttttgcattt taaagaccca ccagctcaat cactttccaa aacaccacga 300 cgagtacaag cgcctttccg cctctccgca accctccttc ctccaagtgt caagttccga 360 ca 362 // ID Gypsy-1_SMo-I repbase; DNA; PLN; 4662 BP. XX AC ADFJ01000153; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_SMo_; KW Gypsy-1_SMo-LTR; Gypsy-1_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4662 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000153; Positions 90960 95621. XX CC Positions [3674-4153] - Integrase core CC 'AAAC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 234..1163 FT /product="Gypsy-1_SMo-I_2p" FT /translation="MADPQSPPLTLEQQLVQLLDAMRLQLNNQTQLMAAFT FT AHGTTPPAFGANPRVRPEFFRGNPGDDVYHWFDHFTVIATYHSWDDARRLR FT EFPTCLQGTALQWYNGLSAATRGDWSVLPDVFKRAFGHADDCDDAFQQLHR FT LRQGPSESVMQFGVRFRSLLLRAEPNMSERIKLGMLWPALRQDLVGLVHAL FT APATLDDALRLAQRYETSPLPLLATRPSAPLPMSDGPVPMEVDAAATRVQG FT QGRGRGRGRDIRCWACDEVGHTYRRCRRFPDWRPPFPGWRPWRQQHPVGAA FT AVEGLDTEVHSGNEESRE" FT CDS 1166..4627 FT /product="Gypsy-1_SMo-I_1p" FT /translation="MEGPCANKLVTPPSFFREYHQGVHSAPVHPVFTFQAR FT FYNKRSPILLSVLVDTGSSLSSIARPVATRCRLHLRRAADPVFILYGNGRT FT HACARDEADLVVRVGDLEFELQSLRVVPSQAFDLILGMDWLQHNHAKCDFE FT AFPPCLILPYVSSIPLTSVPLRPSTSTSASITFVPPLFPLVFPSCSALPFS FT DPSNDLCVAAVDQLMKEYSDLFEFDLSSGAKIATRHPIPTGDARPIKVPVR FT RRSPKEIKILRANVKEMLEKGVIRKSRSPWACEPHLVTKPDGSIRFCIDYR FT PLNEVTIPDVYPLPHTADLLDRLGRSRWFTKLDLASGYWQVSMAEDDIPKT FT AFRTPFGLYEFLVMPFGLNNAPATFQRMMDEVLCDMPEVTADFIDDVLIHS FT EGTWEEHVRDVCKVLDRLRDVGLKLKRSKCVFGSKDTTYLGYRISREGLQV FT DPDKLVAVLKFPTPKCVNDVQRFLGKVQYLGRFVDHLSDRTLPLRALLKSS FT TSSFIWSPDCERAFVNLKELLTTPPVLAYPDYTRPFILRVDASDIGLGGVL FT MQESSSVPGQRHPIAYISRTLQPAEMNYSTTEKECLAAVWGFEKLHAYLHG FT SRTLLEGDHAAVTSLLKRKNLVGRTARWALKLQIYDFDVVHRPGSSMADAD FT ALSRAPLPSPLTSHVSDEPVVPASVDFLDEDSVLSTVAVLDVQCPQGVEQD FT LPSLDEVREAQKIEPWIRRLRDGFENPASLADNLPFRHLHSQYRLEDGLLY FT FVGTDPDAHLRLVVPSVFIPRFLHAYHDSPILGGHMGHRRVTEKLRRSFYW FT PEMRRDIIRYVRSCVWCQARNTPPYAAEGRLESIAVSRPFELVAFDLMGPF FT PRSTAGNEYVIIASDYLTRWVEVGALASASATAVGYFLLNRVVFQHSCPER FT ILSDNGPAFMAEVFHVLTSRLGIRHTFTSAYHPQSDGLVERLVRTFKGMIA FT KYVNFQHSDWDGYLPSLRYAYVTGVQSSIGASPYKLLYGHDPILPTELGLP FT SRLPRAPDARSWDQYLTSILPLVRAESAEHLGRVQVGQQRRYNSHHRPPAE FT YKVDDLVLVRFPHLTVRGLSKGLLAQWKGPYRVLRQVGPQVYEVRHDVQQA FT DPPEIVHVQRLKRFIQRDQEQLIPSTDPPMPPPDVPPDPGPSTREP" XX SQ Sequence 4662 BP; 896 A; 1088 C; 1201 G; 1477 T; 0 other; ttggtggagg tgaggggcac ctttgattgt ccctggggag tgcttggatt tgggatttcg 60 gtttagatct agcttttgca ttgtctagat ctagcttttt ccatttcttt tcttttgttc 120 tttcctttca ggattttagt ttagatctag ctttttgcat tgtttagatc taccatttct 180 ttccagcttt ttgtcatttc tcttcttttg ctctttcttt ctcattcatt ttcatggccg 240 atccgcaatc tcctcctttg actctagagc agcagttggt tcaattgctt gatgctatgc 300 gcctgcaatt gaacaaccaa actcagttga tggcggcgtt cacggcacat ggtacaactc 360 ctcctgcttt tggtgccaat cctcgcgttc ggccggagtt ctttcgtggg aatcctgggg 420 atgatgtgta ccattggttc gatcacttca cggtgattgc cacatatcat tcttgggatg 480 atgctcgacg tttgcgtgag ttccccacat gtcttcaagg gacggcattg cagtggtaca 540 atggattgag cgcagctact cgtggcgatt ggagtgttct tccggacgtc ttcaaacgcg 600 ccttcggaca cgccgacgat tgtgatgatg ccttccaaca attgcatcgt cttcgccaag 660 ggccatctga gtcggtgatg caatttggcg ttcgtttccg aagtcttttg cttcgtgcgg 720 agccaaatat gtcggagcgg atcaagctag gaatgctgtg gccagcactt cgtcaagatc 780 ttgtcggact tgtgcatgca cttgcccctg ccactcttga cgatgctctt cgcttggcac 840 aacgttatga gacgtcgcct cttccacttc ttgctacacg tccttcagct ccacttccta 900 tgagtgatgg tcctgttccc atggaggttg atgctgctgc tactcgagtc caaggacaag 960 ggcgaggacg tggtcgtggc cgtgacattc gttgctgggc gtgtgatgaa gttggtcata 1020 cttatcggcg ttgtcggcgc tttccggatt ggcgacctcc atttcctggg tggagacctt 1080 ggcgtcaaca acatcccgtt ggtgctgctg cggtggaagg tttggatacc gaggtgcatt 1140 cgggaaacga ggagtcgcgc gagtaatgga gggaccttgc gcgaataagt tagtgacccc 1200 tccatctttc tttcgagagt atcatcaagg ggttcactcg gcaccggttc atccagtgtt 1260 tactttccaa gctcgttttt ataacaagag gtctcctatt cttctctccg tgttggttga 1320 tacaggttcg agtttatctt ctattgctcg acctgttgcc acacgttgtc gtctacactt 1380 gcgtcgtgcg gcggatccag ttttcattct ttatggcaac ggccgtacac atgcatgtgc 1440 acgagatgag gcggacctgg ttgtgcgtgt gggcgatctc gagtttgagt tgcagtcgtt 1500 gcgggtggtg ccgagtcaag cttttgacct cattcttggt atggattggt tgcagcacaa 1560 tcatgccaag tgtgactttg aggcttttcc cccttgtctc atacttcctt atgtttcatc 1620 cattcctctc acttctgtac ctcttcgtcc ctctacttct acctctgctt ccattacttt 1680 tgttccccca ttatttcctc ttgtgtttcc atcttgttct gctcttccct tttccgatcc 1740 ctccaatgat ctttgtgttg cagctgttga ccagctcatg aaggagtatt ctgatctctt 1800 tgaatttgac ctatcgtctg gggccaagat tgccacacgt catcccattc caaccgggga 1860 tgctcgtcca atcaaggttc ctgttcgtcg tcggtcacct aaggagatca agattttacg 1920 tgcaaatgtc aaggagatgt tggagaaggg tgttattcgg aagtcgcgga gtccttgggc 1980 atgtgaacct catcttgtga cgaagcctga tgggagtatt cgtttctgca tcgactatcg 2040 tccgttaaat gaagtgacga tcccggacgt gtaccctctt cctcacactg ctgatctctt 2100 ggatcgtctg gggcgaagtc gttggttcac caagctagat cttgcttctg ggtattggca 2160 agtatcgatg gctgaagacg atattcctaa gactgctttt cgtacaccat ttggtttgta 2220 cgagtttttg gtgatgccgt ttggtttgaa caatgctcca gcaacttttc agcgaatgat 2280 ggacgaggtt ctttgcgata tgccggaggt gacggctgac ttcattgatg atgtcttgat 2340 ccactcggag gggacgtggg aggagcatgt tcgtgatgtt tgtaaagtgt tggatcggct 2400 acgcgacgtt ggtttaaagc tgaagcggtc gaagtgcgtg tttgggtcca aggacacaac 2460 ttatcttgga taccgtattt ctcgtgaggg tttgcaagtt gatcctgaca aacttgtggc 2520 tgttctaaag ttccctactc cgaagtgtgt gaatgatgtg cagcgttttt tgggtaaggt 2580 gcagtatctc ggtcgttttg tggatcatct ttccgatcgt actttaccat tgcgagcgtt 2640 gctgaagtca tcaacgtcat ctttcatctg gtctcccgat tgtgagcggg cgttcgtgaa 2700 tctcaaagag ctattgacga ctcctccggt tttggcatat cctgactaca ctcgaccttt 2760 tattttgcgc gtggatgctt ctgacattgg tcttggaggt gtgttgatgc aagagagctc 2820 gagtgtgcct ggtcagcgcc atcccattgc atacataagc cgtacattac aaccagcgga 2880 gatgaactac tccacgacgg agaaggagtg tttagcagca gtctggggtt tcgagaaact 2940 tcatgcctat ctacatggtt ctcggacgtt acttgaaggt gaccatgctg ctgttacttc 3000 attattgaag cgaaagaacc tggttggtcg tacggctcga tgggctttga agcttcagat 3060 atatgatttc gatgttgttc atcgcccagg gagttctatg gctgatgctg atgccctttc 3120 tcgagctcct cttccttctc cactcacttc tcatgtttct gacgaacctg ttgttccagc 3180 atctgtggat tttctagatg aggattctgt gctgtcgacg gttgctgtcc ttgacgttca 3240 gtgtccacag ggcgtagagc aagatctacc ttctctggat gaggttcgcg aggctcaaaa 3300 gattgagccg tggattcgaa ggcttcgaga tgggtttgag aatcctgcat cacttgctga 3360 taacttgcct tttcggcatt tacattctca atatcgcctt gaagatggcc ttctttattt 3420 tgtggggacg gatcctgatg ctcatttacg gctggtggtg ccttcggtgt ttattccgcg 3480 gtttctccat gcctaccatg attctcctat tctaggtggg catatgggac accgtcgtgt 3540 caccgagaag ttgcgcagat ctttctattg gccagagatg cgacgtgata ttatccggta 3600 tgtgcgtagc tgcgtttggt gccaagctcg taatactccc ccttatgctg cggaaggacg 3660 gttggagtca attgcagttt ctcgtccgtt tgagttggtg gcgtttgatc ttatgggacc 3720 ttttccgcga tcgactgctg gcaatgagta tgttattatt gcttctgact acttgactcg 3780 ttgggtggaa gttggtgctc ttgctagtgc ctctgcaact gctgttggat acttcctcct 3840 caatcgagtg gtgttccagc attcttgtcc agaacggatt ctttcggata atggtcctgc 3900 atttatggct gaggtatttc atgttttgac atctcggttg gggatacgcc acacttttac 3960 gagtgcttat catccacaat cagacggtct ggtggaacgg cttgttcgga cattcaaagg 4020 gatgattgcg aagtatgtga actttcaaca ttcggattgg gatggttatt tgccgtctct 4080 tcggtatgct tatgtcacag gggtgcagag ttctattggt gcttcaccat ataaacttct 4140 atatggtcat gatccaatat taccaacaga gctaggttta ccttcgcgat tgccacgagc 4200 tcctgatgct aggtcatggg atcaatattt gacaagcatt cttccacttg tccgagcaga 4260 gtctgctgaa catttaggcc gcgtacaagt gggacaacaa cggcgctaca attcccatca 4320 tcgtccacca gcggagtaca aagtggatga tttggtgtta gtccgttttc cccatcttac 4380 ggtacgtggt ttatctaagg ggctccttgc gcagtggaaa ggaccgtatc gggtgttgcg 4440 gcaagttgga ccacaagttt atgaggttcg gcatgacgtt cagcaggctg atcctccgga 4500 gattgtgcat gtgcagcggt taaaacgctt catacagagg gatcaggagc agttaatacc 4560 gtctacagat ccaccgatgc ctcctcctga cgttcctcca gatcccggcc catctacaag 4620 agaaccctga cggccttcca ttattccgag aggaggggat ga 4662 // ID Copia-31_PIT-I repbase; DNA; PLN; 4650 BP. XX AC AATU01000952; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-31_PIT_; KW Copia-31_PIT-LTR; Copia-31_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4650 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000952; Positions 36263 31614. XX CC Positions [1954-2463] - Integrase core CC 'GAACG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 460..4632 FT /product="Copia-31_PIT-I_1p" FT /translation="MQQRMAAPMAEQFVPPPNFGLKVPKPRDLDWPGFAKF FT AGKEVYPGLGADFKTWGLRFLQRLAAAQQMSGGDWSEEFRILALNGKMDGS FT ALVYFERMLPLWTAESPTLEHVMNRMLVPYMTTITASKGLQLMTAEKLRER FT TWAEHFQYLTYVAERSGCSDLHVIQCLCKSAPGYLQSAMLTRLNSQRMDHL FT QQATELVAFAIEYEASMGKYERSRSQGGRGNREHGRFHGSNRGVHGERGQE FT TVSRVDDTDTRRCYNCNEIGHIARNCPAKKNNGAKEIKVSLAVGTGTNTDT FT HAWILDSGSSVHLVKTVELLKNAVDCDDQYRAANGENIRVIKKGSVELKTI FT VDGREVVVDISDVHYAENLADNIMSYGRLEEKGVYLERHDGKSYMVQQKSG FT VRVFEVHRRHNVLMIDTTGNTSKQARISAVVSQLKEANNSLNEAVTETTLL FT ELHKRLGHISYDTVERMADAAGSGIRLTSRVRMNCLTCAQGKQSKNNQSLK FT DTGASAPIDKIGGVIGSDIKGPMTPKDRRGNRYLINFVDYSTNYVRVFLAK FT NKVEATKKFEHFLVYFEKRFNCRIHVLRTDGGKEYTNVDPFCKATGVRRQI FT SERENQASNGKAERMHRTVLNMARCMLFASGLSLYFWGDAVEYAAYVLNRS FT SCRANAKRISPLEMLTGSVPNLSDIVTFGSPCTAYRDAGKKAWKARAQVGM FT IIGKNDETKGYKVYLPKDRIVITTQHIKNVETLDAKQNAQLQEQLEIEDPE FT LKKAVKEREKATKRKETAVEETRNSEKTAEEENKSLDRAKKTKKKKKQAKK FT NNKRRSTDAAEKEGADEGHVPTEERETTRMHTRNMGAKHVPVNRVNVVKRE FT DPKNYKQAMKDPRADKWRQAIKEELDALEQNGTWTVAKKPPGTKCLRTKWV FT FKLKTHADGTIERYKARLVARGDQQEYGVDYTFTFSAVLELVSGRVILVVS FT RIWKVPARHGDVPSAYVKAKKEAELIIILLIPQGMEFTKEQLEALGVTSKD FT ELVLILEKGLYGLKQSGRLWNHLLHSILVSLGFQQCYTDSCLYIKTETDGM FT TLVGIYVDDILVTATSEDRVDKFFAEMQIVELKDLGVVSKFLGIAFQYDDE FT KGWALDQEQVIQDLLVKFELDNAAAVRTPIDGGYDGEETSVILPSKGAGSP FT RRPTVQTFQSLVGSLLWLSRCTRPDISFAVHCVTRNAHAPTEADWRLAKRI FT AKYLKGTKKLKFLMNTNKNTMNNAGVLVEAFSDADYASNKKDRKSVTGGVL FT MVAGVIVAWLCKKQACVALSTMESEFVAASQTTAEMLGIMECLKEVGLKLM FT EPSVLHVDNQAAIAQLEGEDSSGRAKHIDTRHKFVKDFVQKNVLRVQYCES FT VKMRADILTKVLPAPRLKELRELVMLSG" XX SQ Sequence 4650 BP; 1344 A; 1040 C; 1416 G; 850 T; 0 other; ggttatgagc ccaacgggtt ccgacggcac ctcacagcaa caaaacccgc gcgatgtcca 60 agagactgat gtccacgggc tgaacgtggc agcagacccg tttgagttgt tcgaggggac 120 gcactctgag tcaggtgcgt ccgatgctcc aggaagggga agccggaact ctagcgcaag 180 ttctgagcga ctagataagc ttgaaggtct cattgaatgc atggccaaac aacaggccaa 240 gtttatggct gaccaagcgg agcttcaaaa gcagctgcag caccgcacgg acacgccatc 300 cttcgaacac aagtacggag agtcgagcgc gtttactgat ttcatcaagg ctcgagcacg 360 gcggatgaga gtaggatctc tcgatgcgtc gatgaggacg ccgacgcaga cgacgccagc 420 tccagagatg ccgacgccac gacggagaac gcgacgagta tgcaacagcg gatggccgca 480 cccatggcag agcagtttgt gccgccacca aacttcggac tcaaggtgcc gaagccacgc 540 gacctggact ggccgggctt cgcgaagttc gcgggcaagg aggtgtatcc tggccttggt 600 gcggatttca agacttgggg actgcgattc ttgcagcgac tggctgcagc tcagcagatg 660 agcggtggtg actggtcgga ggaattccgc atccttgcct tgaacggcaa gatggatgga 720 tctgcactgg tgtacttcga gaggatgctt ccactctgga cggcggagtc gccgacactg 780 gaacatgtga tgaatagaat gttagtaccg tacatgacga cgatcactgc atccaaggga 840 ttgcagttga tgacggcaga gaaactgcgc gaaaggacgt gggcggagca ctttcagtac 900 ttgacgtacg tagctgaaag gtcggggtgt tcggatctac acgtgataca gtgtttgtgt 960 aagtccgcac cgggttactt gcagagtgcc atgctcacaa ggctgaactc acagcgcatg 1020 gatcacttgc agcaagctac ggagttagtg gcttttgcga ttgagtacga ggcaagcatg 1080 ggcaagtacg aacgatctcg tagtcaagga ggccgcggca acagagaaca tggtcggttc 1140 catggtagta accgaggtgt ccacggtgaa cgaggacagg aaaccgtctc acgcgtagac 1200 gatactgaca ctcgcaggtg ctacaactgc aacgagattg gacatattgc aagaaattgt 1260 ccagcgaaga agaataacgg tgccaaagag atcaaggtct cgctagctgt cgggacgggc 1320 acgaacaccg acacacacgc gtggatcttg gatagtggat ccagcgtgca tctagtcaag 1380 accgtagaac tgttgaagaa cgcagtggac tgtgacgatc aatacagagc ggcgaatggt 1440 gagaacataa gggtaatcaa gaaaggctct gtggagctca agacgatcgt ggatggacga 1500 gaagtcgtgg tggacatttc ggatgttcat tacgctgaga acttagccga caacatcatg 1560 agttacggca gattggagga gaaaggtgtg taccttgagc gtcacgacgg caaaagctac 1620 atggtgcagc agaagagtgg agtgcgcgtg ttcgaagtcc acagacgaca caacgtgtta 1680 atgatagaca ctacggggaa tacaagcaaa caggcgcgaa ttagtgcagt agtcagtcaa 1740 ctgaaagaag caaacaactc cctgaatgag gctgtgaccg agacgacact gttggagctg 1800 cacaagcgtc tggggcacat ctcgtacgac acggtagagc gcatggccga cgcggccgga 1860 tcaggcatta ggttgacgag ccgagtgcgc atgaactgct taacctgtgc acaaggcaag 1920 cagagtaaaa acaaccagtc actgaaagat acgggagcga gcgcacccat tgacaagatc 1980 ggaggcgtca ttgggagcga tatcaagggg cccatgacac ccaaggacag gcgcggtaat 2040 aggtacttaa ttaactttgt cgactattcc acgaactacg tgagagtgtt cctggccaag 2100 aacaaggtgg aagccactaa gaagttcgaa cacttcttag tgtacttcga gaaacgattt 2160 aactgtagaa tccacgtgct caggactgac ggaggcaagg agtatacgaa cgtggatccg 2220 ttctgcaagg cgacaggagt gcgccgacag attagcgaga gagagaacca ggcatccaac 2280 gggaaggccg aacgaatgca caggacagtg ctgaacatgg ccagatgcat gttattcgct 2340 agtgggctat cactgtactt ctggggagat gcagtcgagt acgcagcgta cgtactcaac 2400 cgcagctcgt gtagagcgaa cgccaaacgc atatcgccat tggagatgtt gacgggttca 2460 gtaccgaact tgtcagacat cgtcacgttc ggcagcccct gtactgctta cagagacgcc 2520 ggcaagaagg cctggaaggc aagagcacaa gttggcatga taataggcaa gaacgacgaa 2580 acgaagggct acaaggtcta cttaccgaag gacagaattg taataacaac ccagcacatt 2640 aagaacgtcg agaccttgga cgccaagcag aacgcgcaac tgcaggaaca gctcgagata 2700 gaagatccag aattgaagaa ggcagttaaa gagcgagaga aggcgacgaa gcggaaggag 2760 acagctgtag aagaaacacg caacagtgaa aagaccgcag aagaagaaaa taagtcgctg 2820 gatagagcaa agaagacaaa gaagaagaag aaacaggcta agaagaacaa taagaggcga 2880 agcacagatg cagctgaaaa ggaaggagca gatgaaggac acgtgccaac tgaagaaaga 2940 gagaccacac gcatgcacac gcgcaacatg ggcgcaaaac atgttccagt aaaccgtgtg 3000 aacgtggtga agcgcgagga tccgaagaac tataagcaag caatgaagga cccgcgcgca 3060 gacaaatgga ggcaggccat caaagaagag cttgacgcat tggaacagaa tggcacgtgg 3120 acggtagcga aaaagccgcc agggacgaag tgcttgcgca cgaagtgggt cttcaagctc 3180 aagactcatg cggatggtac cattgagcgg tacaaggcta ggctggtagc gcgcggagac 3240 cagcaggagt acggtgtaga ttacacgttt acgttctcag ccgtactgga gctagtatct 3300 gggagagtga tactagtggt atcgcgtatc tggaaggtgc cggcacgcca cggagacgta 3360 ccgagtgcgt acgtgaaggc caagaaagag gccgagctaa tcataatcct gctgatccca 3420 caaggcatgg agttcacaaa ggagcagctc gaagcactgg gcgtgacgag taaggacgag 3480 ctggtgttaa tcttggagaa gggtctctac ggactaaagc agtctggccg attgtggaat 3540 cacttgctac acagtatctt agtgtcgctg gggttccagc aatgctatac cgacagttgt 3600 ctatacatca aaaccgaaac agacggtatg acacttgtag ggatctacgt ggatgacatc 3660 ttagtgacgg caacaagcga ggacagggtt gacaagttct tcgcagagat gcagatcgta 3720 gagcttaagg acttgggtgt ggtgtccaag ttcctgggaa ttgcatttca atacgacgat 3780 gaaaaagggt gggctctgga ccaggagcaa gtaatccagg acctactggt aaagttcgag 3840 ttggataacg cggcagcagt acgtacgccg atcgacggtg gatacgacgg cgaggagacc 3900 agtgtaatac tgccgagtaa gggtgcagga agtccaaggc gaccaacagt gcagactttc 3960 cagtcgttgg tgggcagttt gttgtggctc tcaagatgta cgaggcctga catctctttt 4020 gcagtgcact gtgtgacgag aaacgcacac gcccccaccg aggccgactg gaggttggcg 4080 aagagaattg ctaagtattt aaaggggacg aagaagttga agttcctaat gaacaccaac 4140 aagaacacaa tgaacaatgc tggggtgctg gtggaagcgt tcagcgatgc agactacgcg 4200 tccaacaaga aagacaggaa gtctgtaaca ggaggagtac taatggttgc aggagtgata 4260 gtagcatggc tgtgcaagaa gcaagcgtgc gttgcactgt cgaccatgga gtcagagttc 4320 gtggcagcat cacagacaac tgcggagatg ctgggcatca tggaatgtct caaagaggta 4380 ggactaaagc taatggagcc gtcagtgctt catgtcgaca accaagctgc aatagctcag 4440 ttggagggag aggattcgtc cggacgtgcc aagcacattg acacgcgtca caagtttgtg 4500 aaggacttcg tacaaaagaa cgtgctacgg gtgcagtatt gtgagtccgt gaagatgcgt 4560 gcagatatcc tgacgaaggt tctccccgcg ccacgcctca aggagctgcg tgaactggtg 4620 atgttgtcag gatgatcgcc cgggaaggag 4650 // ID Copia-1_AAn-LTR repbase; DNA; PLN; 113 BP. XX AC ACJI01002245; XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Aureococcus anophagefferens genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_AAn_; KW Copia-1_AAn-I; Copia-1_AAn-LTR. XX OS Aureococcus anophagefferens OC Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. XX RN [1] RP 1-113 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Aureococcus anophagefferens RT genome."; RL Direct Submission to RU (25-FEB-2011). XX DR Genome; ACJI01002245; Positions 418 530. XX SQ Sequence 113 BP; 24 A; 34 C; 22 G; 33 T; 0 other; tgcgctaccg taaggtagca cactgagctt cccctctcac ccactgtgcc tatcctgcta 60 ctacggactg taccttaacg tcaagttgat gtacgggact tagtttcttt aca 113 // ID Gypsy-14_PSo-LTR repbase; DNA; PLN; 884 BP. XX AC AAQY01000218; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PSo_; KW Gypsy-14_PSo-I; Gypsy-14_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-884 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000218; Positions 7584 6701. XX SQ Sequence 884 BP; 214 A; 234 C; 248 G; 188 T; 0 other; tgtggtgaga agatccgctc aagaagggtc ttgatgggac tggatccgcc agttgactgg 60 gtagtgggat ccggcagttg gtgacgatgc acagtccctc tgatgacgcc atggttgcgg 120 gatggaggca cggttgcggg atcaggacag ttgaagttgg atcaggtgcg agtggtgtgg 180 tgcatacgga tccggtcatc tatattagga tcccctagat taggtgcgga tccgtaccag 240 cttattgata cagtggttat gttgggataa ttaggcagga gggagagcca gtcatggata 300 ggatccaagt cggatgggaa ggctgggtat tggctaacat aaatcagagt tgaatttgct 360 tgggaaccac acacttggcc cttagtattg ggattagtat tggtccatac tttaattaag 420 tgatttgccc accgcacacg tggcagactg ctggatagat tagtcagcag ctcgcgccct 480 tcggccctcg ccccccagct cccccgctaa tcgtaggcgg caagcgacgt aaaggaaaag 540 gatacaacac ccccaacaag gcagcaactc cggatccggt atattactta tcggatccac 600 aagatctacg gccaagacca aggatcaacc tacccagacc cgcgcgaagg aacccccact 660 gcggatctac cccaacatct ccccaagtcc ccgccaggga cattcaagtt cacccgctgc 720 gcatcttgtg tcaacgagag agcagaacca acccgccgac gggtacacaa ggtgagccac 780 tcagcaacct acggttatcg gagtaccccc tccgttagtt ggtgtctggg cgcagtgtgt 840 gagtgtggga tccctgccaa ttccaccgga tccactccac caca 884 // ID Gypsy-20_PSo-I repbase; DNA; PLN; 4921 BP. XX AC AAQY01000794; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PSo_; KW Gypsy-20_PSo-LTR; Gypsy-20_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4921 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000794; Positions 161059 165979. XX CC Positions [3760-4248] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 852..1814 FT /product="Gypsy-20_PSo-I_2p" FT /translation="MADVSELMQGVLQLMQQQQEMMRVMNEQRGMNDFKLD FT GIRLPKYTGHESESFCLYQEELSQYFEARNIDWKNERWPTRVLAIIGSTLK FT GQAGQWYLARKHEIYSAEQLLRELVRAFVPADLQLRLREQLRHLSQKSCKS FT LGDYVSRFRNIVLPVEHMTEIDKVVYFSQVLMPNTRQEVLYKRCETLTDAI FT TVAMDYERSHFGAPARTGRRDRDHPRFRRNESTSRSNGPEPMEIDNAQELS FT PEECRRQRKCYNCFRGGHIAAHYKAPRRNQRPYRGPNQRQRDSQHVNAVEQ FT HVSEGEERIAYDQYTVDAFEEVSMHDMVA" FT CDS 2560..4755 FT /product="Gypsy-20_PSo-I_1p" FT /translation="MEMKPNAASSTRAPFRLSKTEQEALEKFVAENMNKGW FT IEVSNSPWVSNIFGVPKKDPATGQIPKRAEWLRSGNSSIPIRWVIDFRYVN FT SQTKIPKIPLPLIEEIFDKMVGCTVFSVLDLAQGYHQMRVKPRLSGMPGVW FT SRLMRVLFDKFDFVVVYLDDICVFSKIKEEHLNVVADAISRPSQLPATDSD FT DEVTDKPEPWKLPAVHDCSSFCTHQASRLRRHSAHAAMLRLLPSDDRCLLL FT DDLDLRGGESRPFGVQQEVNVHVEQVQNVEYSTSSVNLSEDQKKKFQAGYK FT RDPAFKEAWNRPSKSADFVKSNGLLYKCSDHSVMRLCVPNNAQLITNILQE FT FHDAHTAAHPGIRRTQLRVAQWYFWPTLEKDTKEYVASCGTCARGKVSTAH FT KKGTMMPIPVPSERWEVVTMDFVTGLPVSNGFDAIMTVVDKLSKRPKYIPI FT HTTADAPEVARIFFEGVVRHHGLPKVIISDRDPKFTLKFWKSLMDIMGVKL FT SLTTAYRAQADGQTERQNLVLEDALRCMVSYHGRDWATHLGTIEYVHATLE FT SSSTTLTPFEVDTGRKVRNLVSQITSGEVRDEDVPLVDFAQKFAQERKKII FT ELARKNLLAAQERQKKYYDRKRRDVEFKEGDLVLLDTRNLPLKRITANTEL FT NREKLAMRYIGPFEIEKMINSNVARLKLPSHMSRLQPSFNVAFLKHDVPNP FT QRFASRPLPKSAPVLLDDDTDEELHFPEALLQ" XX SQ Sequence 4921 BP; 1259 A; 1205 C; 1394 G; 1063 T; 0 other; tttggtagca cttgttgatc tcctcgcaac cgcgcttcgc tcaacctcag ggaggtcttc 60 gggcaccggc tgggtattcg cttttgaccg cgcttcgctc aacctcggag agggctacgg 120 gcaccggtga ttggctgtaa ttcggaccca ccagacatct gtcaagggaa cgtcggcata 180 agtacgaggc accagttgta gcggcgcacc cgatccagtc cggctttcga gttcggcggt 240 taggggtagt gcagtccgct ctgagttgcc cgggccgctt ctttgattgg atggctggac 300 gtaggggtcg tcgcgttgac aacgctgttc ccgacgggtc ttttgagagg ctgggtgtaa 360 tcgacgccac cgacatcgac aagttgcgca ccgattgcta ccgtcaaatc cagcacgcgg 420 tgcgaacgac cgaacggctg ctgagagatc ttgctgaggt caagccactg acttcggagg 480 aaagagacca gaaaaaggcg gtcatccacc agctctgtcg cgtccagcgt aaactcggca 540 aggcgaccgg cctcatcaac ctcggtgtag ccaggatttt ggaccctcgt accacccgtc 600 agcaactcga gcacgacaac cgtctccgtg accgcgagga agcccgccgc cagcgtaacc 660 tagcaactgt aagggagctg attaactcgt ctagcgagca gtaaagacgt tttagtcgct 720 tttttacggc aatttatcgt agtgtgtgaa aacgaatacc ttcgcgggta taacgtttta 780 gagggaatca gctttgttac tagttagacg tttgggttaa ggcttccgcg tgtgaaagga 840 gggcgaacaa gatggcggac gtctcggagc tcatgcaagg agtgctgcag ctgatgcagc 900 agcaacaaga gatgatgaga gtaatgaacg agcaacgagg aatgaatgac ttcaagttgg 960 atgggattag actacccaag tacacggggc atgagtctga gtcgttctgc ctgtatcaag 1020 aagagctgtc gcagtacttt gaggcccgca acattgactg gaagaacgag cgttggccga 1080 cgagggtact ggccattatc gggagcacgt tgaaggggca ggctggtcag tggtatctgg 1140 cgcggaagca tgagatctac tctgcggagc agttactccg agagttggta cgcgcgtttg 1200 ttccggcgga tcttcagttg cggctgcgtg agcagttgcg acacctgagc cagaaatctt 1260 gcaagtcgtt gggtgattac gtttcacggt ttcgcaacat tgtactacca gtggaacaca 1320 tgacggagat cgacaaagtg gtgtacttct cgcaagtgtt gatgccaaat acgcgtcaag 1380 aagtactgta caagcgttgt gaaaccctta cggatgccat tacggtagcg atggactatg 1440 agcgctcgca cttcggtgct ccggcgcgca cgggacgtcg cgaccgtgat cacccacgat 1500 tccgcagaaa cgagtcgact tcaagatcaa atggccctga gccaatggag atcgacaatg 1560 cgcaagagct cagtccagaa gagtgccgtc ggcagagaaa atgttacaac tgcttccgtg 1620 gtggtcacat tgcagcccac tacaaggctc ctcgtcggaa ccagcgcccc tacagaggtc 1680 cgaatcagcg tcaacgagac tcgcagcacg tcaatgctgt ggagcaacac gtcagcgagg 1740 gtgaagaaag aatcgcgtac gatcagtaca ctgtggatgc gtttgaggaa gtcagcatgc 1800 atgacatggt tgcttgaccg gataatgagc tcatgcgcaa acccgggaga atcgaaaggc 1860 gcccagtaac gatactgctt gactgtggtg ttaaatctgg tacggccagg aatggtgtcg 1920 aaggtgacag gaactaagga tgtacagggg aagggcttcg atggagagat caaggagtat 1980 cacgatgtga aggtagtgga agcggacatc agcatggaag acaagacgtt cgagaggatg 2040 cgtctagcag agagtctact ggcgattgaa catgacgtta tcttgggtaa gccgtggttt 2100 accacatatc agccaacaat caactggcga acgcatgaag tagtatttcc gagcatggaa 2160 gagagaccac ggcccaagac ggacaagaac gcaaacaaga tggaagacca gaaagaatgt 2220 gagaaaggcg ccgtcacaat ggacccgagc gaaattgaag agtcggagtc ggcagaagag 2280 caacgaaaga aagcggaaaa ggaagcagtt cgcgcacgtc atcggtcaca tctcgccttg 2340 gctgagggca tggcgtaatg gcgtctttgg gtccacgaag aagtttcgtc gtcgtatgca 2400 ggacagggag tttgcggagc tgttcttcgt caaggtctgt gtagcagtgg aatctgacaa 2460 tgtaccagac tacattaaac ctttgctgga caagtttggt gatgtcttcc cagaaagttg 2520 ccagatggcc tacctcccga gcgcatcgtc gagttcgaca tggagatgaa gcctaacgcc 2580 gcttctagca cccgagcacc gtttcgactg tctaaaacgg agcaagaagc attggaaaag 2640 ttcgtcgcgg aaaacatgaa caaagggtgg atagaagtct ccaattcacc ctgggtctcc 2700 aatatcttcg gtgttcctaa gaaagatcct gcgactggtc aaatcccgaa gcgggcagaa 2760 tggctgcgat ccgggaatag ttccattccg attcgttggg tcatcgactt ccgctatgtc 2820 aacagtcaga cgaagatccc gaagattcca ttaccgctaa tcgaggaaat ctttgacaag 2880 atggtcggct gcacagtgtt ttcggttctg gacctggccc aaggttacca ccagatgcgg 2940 gtcaagccgc gtctttcggg tatgcctggg gtttggtcac gactgatgcg cgtcctgttt 3000 gacaagttcg acttcgtcgt ggtctatttg gacgatatct gcgtcttttc caagatcaaa 3060 gaagagcatc tcaatgttgt ggccgacgcc atatcccgtc caagtcagct cccggcgact 3120 gattccgacg atgaagttac agacaagccc gagccttgga agttaccagc agttcatgat 3180 tgttcgtcat tctgtacgca tcaggcttcg aggcttcgac gtcacagtgc ccacgcagca 3240 atgcttcgct tgcttccgtc cgacgaccgc tgtcttcttc tcgatgatct ggacttgcgg 3300 gggggggaga gtcgcccttt tggggttcag caagaagtca atgttcacgt ggaacaagtc 3360 cagaacgtcg agtactcgac atccagcgtg aatttaagcg aagatcagaa gaagaagttc 3420 caagctggat acaagcgaga ccccgcgttc aaagaagcat ggaaccgacc gagcaaatct 3480 gcagacttcg ttaaatcgaa tgggctcctg tacaagtgtt cggatcattc agtcatgagg 3540 ctgtgtgtcc ccaataacgc tcagctgatc acgaacatct tgcaagaatt ccatgatgca 3600 catacggcag ctcatcctgg aatccgtcga acgcagttga gggttgctca gtggtacttc 3660 tggcccacgt tggagaagga cacgaaggaa tacgtggcaa gctgtgggac gtgtgctaga 3720 gggaaagtaa gtaccgcaca caagaaaggc actatgatgc caattccagt tccgagtgag 3780 cgctgggaag tagtgactat ggacttcgtg acagggctac ctgtttctaa tggcttcgat 3840 gcaatcatga cagtggtgga caaactgtcc aagcgaccca agtatattcc gatacatacg 3900 acggcagatg ccccggaggt tgcacgaatc ttctttgaag gagtcgttcg tcatcacggt 3960 ctgccgaagg tgatcatcag tgatcgagac cccaagttca cattgaagtt ttggaagtcg 4020 ctcatggata tcatgggggt caagttgtcg ctcaccacgg catatcgagc ccaagcggat 4080 ggacagactg agcgtcagaa ccttgtcttg gaagatgcat tacggtgcat ggtgtcctat 4140 catggtcgag actgggctac gcatttggga acaatcgagt acgtacatgc gacgctggag 4200 agctcctcga caacgctcac gccgttcgaa gtggacacag gacgcaaggt caggaacttg 4260 gtatcccaga tcacatctgg tgaagttcgt gatgaagatg tcccgctagt tgattttgcg 4320 cagaagtttg ctcaagaacg caagaagatc attgaattgg cgcgcaagaa tctcctggca 4380 gctcaagaac gtcaaaagaa gtactacgac aggaagcgcc gagacgtgga gttcaaggaa 4440 ggagaccttg tcctgctgga cacgcgtaac ttgccactca agcgcatcac ggctaacacg 4500 gagctcaacc gtgagaagtt agcgatgaga tacatcggcc cattcgaaat cgagaagatg 4560 atcaactcca acgtagcacg gctcaagtta ccaagccaca tgagtcgcct tcagccgagt 4620 ttcaatgtgg cgttcctcaa acatgacgtt ccgaaccctc aacgcttcgc gtcacgacct 4680 ttgcctaagt ctgcaccagt actcctcgac gatgacaccg acgaagaact acatttccca 4740 gaagctttgc tccagtagaa acagcgcaac accaaacggc tttggctggt caagtggcac 4800 ggacttcccg attctgaaaa cacttgggag tacgaggtca agctcaaacg tgtatcgcat 4860 tggcgtgacc ttcttcacaa gttccgtcaa cagcgccaac gcgattaaaa gtccgggggg 4920 a 4921 // ID Copia-9_PSo-LTR repbase; DNA; PLN; 185 BP. XX AC AAQY01000747; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PSo_; KW Copia-9_PSo-I; Copia-9_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-185 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000747; Positions 51662 51478. XX SQ Sequence 185 BP; 48 A; 37 C; 50 G; 50 T; 0 other; tgctgtacac aagggcaact tgcgggttgc agagagtgat ggtcgtcgaa gcttcgcgaa 60 gcgctgatca agtttgtcag ggttctagat tgtaggaact agagcgagct gctaaggtct 120 cgtaggtaaa gcttttgatt caatctcact ttccattcta cactgcatcg caaaagaaga 180 gttca 185 // ID Gypsy-5_PSo-I repbase; DNA; PLN; 4856 BP. XX AC AAQY01000371; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PSo_; KW Gypsy-5_PSo-LTR; Gypsy-5_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4856 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000371; Positions 19181 14326. XX CC Positions [3511-3909] - Integrase core CC 'CACCC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 39..2777 FT /product="Gypsy-5_PSo-I_2p" FT /translation="MTKTRAQRSNSPDDDADRASAPIFTPILPPRITSTSH FT AALVKWRKERREYEYTILNRAKGETDDLIVPIKNTFDEGLLRQWCRLRWKM FT SMSDVTDETILTEVDKIISAVRNNSVPDIDQEMAEHLRMDLSESDVHERVI FT QYFKLCHEIIDDHGWRIFFTGDDGRKQLCSILIKSLEPKALREEVDRTARF FT QTCKAREDEVVLHDLILEKALDHEKAYQSQRRAKRHRDRGDRDAERPAMRT FT GIKKTAKKQRLAGETSGSGPRPSPKSPADRPKTTPTPCPHCGDLHWFSECS FT KATDSEKAEIRRKLRAQRGDQTKREVARLKRLRECIPSTEKTVTLNDVMEL FT PYCADTGADRTAISQRHLEELMLRDPAIKLTRLSTPLVIVCVADHAITCTT FT SVQLRVLLNTASGPVAIHEPVECLVINDDDPEFILGQDLLKQPGIDVDRQL FT EQLAEREADDGEDPVDDDDGAPVSSSPPTDADLHQAVERLVQMALQHGFPR FT HLEEQLRAIAIKHDIWRIELGNDPPARVKPLKIRLKDGVSAVKIKPRRYPP FT AVRVFLREFNQKLVDLGWAYENPTSRWASPVLPVRKPGTTDDEYRQTCDYR FT LVNDLIEALISTMPHMSTLLEHTKGKKHFGLFDLLKMFWQLPLDELSQELM FT SYITDAKIYTPRRVPQGCCDAAVHFQQTMEQCFESLLYKYLIDWIDDLLLF FT ADDIDTSLLKLEQFFDLVASFGLKLSAKKSSLYHQSVEWCGRIITCDGISH FT HPERIDALPSMPYPATAGQLQQFICAANWMRESIADYARAVEPLQRRLDDA FT LRNSERTKRVAAGISVELTAAEKDAYDHVKSLLASSATLSLPDDASTTCVF FT TDASDTGYSAILTQVKDFDPKVPITTQKRQLLTCLSGTFHGSQLNWTVIEK FT EAYPIVVAC" FT CDS 3517..4548 FT /product="Gypsy-5_PSo-I_1p" FT /translation="MHGHFCELVVCDAADSAAATAAILDWHSRFGAPPTWV FT SDNGSHFKNEVVAELSRRLKSQQNITLAYSPWINGSVERVNRDILQVLRAM FT TLEYKVSTKDWVYLVPLIQASLNHTALPSLGNRAPVELFTGPPCPSPLAEF FT YHPGDHKLVTLPHHSAEMDRYLAELRASLCAMHQPIADQRLKQRLLNKKKE FT RGENVVNFDVGDYVLRSRVDEKKGNKLLVTWQGSYKVVRADAHSFRIRHLV FT TADEYDVHASRLKFYADNKLNVTEEILEHVASQGIILAINGFKKHRWNTSI FT NDYEILVSWKGLESVEDSWEPLKSLAHEVKVLLGQYIQKQDATVRKYCKDL FT Q" XX SQ Sequence 4856 BP; 1257 A; 1327 C; 1251 G; 1021 T; 0 other; aataattgtt tagcagtacc tgctgaacca agaccaacat gacgaagact agagcgcaaa 60 gatcgaactc acctgacgac gatgcagatc gtgcgtcggc ccccatcttc acccccatct 120 tgccgccgag gatcaccagc acgtcccacg ctgctttggt gaagtggcgg aaggaacgcc 180 gcgagtacga atacactatc ctcaaccgtg cgaagggtga gacggacgat ctgattgtcc 240 cgatcaaaaa cacgttcgac gaaggactgc tcaggcagtg gtgtcgcttg cgttggaaga 300 tgtccatgtc ggacgtcacc gacgagacca ttctcaccga ggtggacaaa atcatctcgg 360 cggtgagaaa caacagtgtg ccggatattg accaggaaat ggccgagcac ctacgcatgg 420 atttaagtga gagtgacgtg catgagagag tcattcaata ctttaagctg tgccatgaga 480 ttatcgacga ccacgggtgg cgcattttct tcaccggtga cgacggtagg aagcaattgt 540 gctccatttt gatcaagtcg ctcgaaccaa aggcacttcg cgaggaagtc gatcggactg 600 cacgttttca aacgtgcaaa gcgcgcgagg acgaggtggt tctacacgac ttgattctcg 660 agaaagccct cgaccacgag aaggcctacc agagccaacg acgcgccaag cgccaccgtg 720 atcgcgggga tcgtgacgcc gagcgccctg ccatgcgcac aggcattaag aaaactgcca 780 agaagcagag gttggcaggt gaaacaagcg gttctggccc acggccatct ccgaaaagtc 840 cagcagaccg accaaaaacc acgccaacac catgcccaca ctgcggtgac ctccattggt 900 tctccgagtg tagtaaggcc acggatagtg agaaagctga aatacgcagg aaattgcgtg 960 ctcagcgtgg cgaccaaacc aaacgcgagg ttgctcgact caagcggctc cgggagtgca 1020 tcccatcgac tgagaagact gtcacgctga atgacgtgat ggaactgccg tactgtgccg 1080 acactggtgc cgaccgaaca gctattagcc agcggcatct tgaagagctc atgcttcgcg 1140 accctgcgat caaactgacc cggctcagta caccattggt aattgtctgt gttgccgacc 1200 atgcgattac ctgcaccaca tcggtgcaac ttcgggtgct tttgaacacc gcgtctgggc 1260 cagtcgcaat tcatgaacct gtggaatgcc tcgttatcaa tgatgacgat ccagaattca 1320 ttctgggtca agacctgctc aagcaaccgg gcattgacgt cgaccgacag ttagaacagc 1380 tcgccgagcg tgaggctgac gacggtgagg acccagtgga tgacgacgac ggtgcacctg 1440 tctctagctc gcctccaaca gatgccgacc tccaccaagc cgttgagcgt cttgtgcaaa 1500 tggcactaca acatggattt cccaggcact tggaggagca gctccgcgcc attgcgatca 1560 aacacgacat ctggcgtatc gagctcggca atgaccctcc ggctcgtgtc aaaccgctta 1620 aaatccgtct caaagacgga gtgagtgcag tgaagatcaa gccacgcaga tacccacctg 1680 ccgtgcgagt ttttctacgc gagtttaacc agaagctggt cgacctcggt tgggcttatg 1740 agaatccgac tagccgttgg gccagcccag tgctgccggt tcgtaagccg ggtaccaccg 1800 acgatgagta ccgacaaacc tgcgactatc ggcttgtcaa cgatctgatc gaggcgctga 1860 ttagtaccat gcctcacatg agcacactgc tagagcacac caagggtaag aagcatttcg 1920 gactgttcga tctcctcaaa atgttttggc agctacctct agatgagctt agtcaagagc 1980 tgatgtcata catcactgac gcaaaaatat acactcctcg ccgcgtgcct caagggtgct 2040 gcgacgctgc tgtgcatttc cagcagacaa tggagcaatg ttttgagtcg cttttgtaca 2100 agtatcttat tgactggatc gatgatctat tgctctttgc cgatgacatt gacacctcct 2160 tgttgaagtt agagcaattc tttgacttgg tggcgtcatt tgggctgaag ctcagcgcga 2220 agaagagcag tttgtaccac caatctgtag agtggtgcgg tcggattatc acttgcgatg 2280 gcatctccca tcacccagag aggatcgacg cattgccgtc aatgccgtac ccggccactg 2340 ccggccagtt gcagcagttt atctgcgcag ctaactggat gcgtgagtct atagcagact 2400 atgctcgggc tgttgagccg ctccagcggc gactcgacga cgccctccgc aacagcgagc 2460 gcacaaagcg tgtagctgcg gggatttcgg tcgagctaac tgcagccgag aaagacgcat 2520 acgatcatgt gaagagctta ctggcaagtt ccgccacact atctctgccg gacgatgcgt 2580 ctacgacctg cgtattcacc gacgcctcgg atacaggcta ttcggccatc ctcacccagg 2640 tgaaggactt tgacccaaag gttccgatca ccacgcagaa gcgtcaactg ctcacgtgcc 2700 tgagtggaac cttccatggc tcacagctga attggactgt cattgagaaa gaagcctacc 2760 ctattgtggt ggcctgctag aagctagatt atccactgct gcgtgcaaga ccttttcggc 2820 tattctgtga ccaccgaaac ttaatccacg tcttcgcacc tcacatgagt atcaagaagc 2880 acatacgtgg gaagctgctt cgatgggcgc tcaaactgat gacctaccgc tgcattatcg 2940 aacatgttga cgggaccgcc aacatttggg cggacatgct ttcaagatgg gctggccagc 3000 ccacgactac agtcaagttg aagcgattct cccagatgaa gggtaagaag cagcggtcat 3060 cgacgaagcc gccaggacag caagccctgg atactcgact cagaaagctt cacgtggcca 3120 acactggacg agttcaggac gtcacaacag cagcaccagg cacccgcaag gacagtgtgc 3180 tacgagtcga ccagcggatc tgggtccctc gagcatgcaa agacctcact caacggctct 3240 atgtgatcgc ccattgcggg gcccaaggcc accgcggcga gcaggccatg gttaaccacc 3300 tgcgccgagt tttccacatc cctgacctac ggagcgtcgt gcacacattt gtgtcggcgt 3360 gcatgttgtg cccacatgta aagggaggaa agatgattcg tcgcccatgg agcgaaacta 3420 ttgagtgcaa tgaacgaaac ggaatcctac attgggattt tttgtcctta ggagaatctt 3480 ttgggaacag taagtaccta ttggtgctga aggaccatgc atggtcattt ctgcgagctc 3540 gtagtgtgcg atgcggcgga cagtgccgct gccactgcag ccatcctcga ctggcatagc 3600 cgttttggag ccccaccaac gtgggtgagt gacaacggca gccacttcaa gaacgaagtg 3660 gtcgcagagc tttcgagaag gctcaagagc cagcaaaaca ttactttggc gtacagccca 3720 tggatcaacg gctctgttga acgcgtcaac cgcgacatac tacaagtgct aagagcgatg 3780 accctagagt acaaagtatc aacgaaggac tgggtctacc tcgtaccgtt aattcaagcc 3840 agcttgaatc acactgccct accttcgctc ggcaatcgag cacctgttga acttttcact 3900 ggaccaccat gtccatcgcc tctcgctgag ttctatcacc ctggtgacca caagctagtc 3960 acactgccgc accattcggc agagatggac agatacctag cagagctgcg agccagtttg 4020 tgcgcaatgc accagcccat cgctgaccaa cgcctcaaac agcggcttct taacaagaaa 4080 aaggagcgag gtgaaaacgt ggtcaacttt gacgtggggg actacgtcct acgttcacgc 4140 gttgatgaga aaaaaggcaa caagctactc gtcacgtggc aaggatcgta caaagtggtc 4200 cgagcggacg ctcattcttt ccgaatccgt catttggtga cagcggatga gtatgatgta 4260 catgcatcac gtctaaagtt ctacgcggac aacaagctca acgtaacgga ggaaatccta 4320 gagcatgttg cctcccaggg catcatactg gcaatcaacg ggttcaaaaa acaccgatgg 4380 aacacctcca tcaatgacta cgaaattctc gtaagctgga aaggcttaga gtctgtcgaa 4440 gactcgtggg aaccgctcaa atcactcgcc catgaagtca aggttctact gggtcaatac 4500 attcaaaagc aagacgccac ggtgcgcaag tactgtaagg acctccagta aaaaaaacaa 4560 tacaacctga tgcacaattt tgccaaaatc aacattcttc tccaatatcg gattcggtta 4620 cgccaccatg tagcgatgtc gtgttgtatt acacaaaaat attccgatgt tctaaaaccg 4680 catattggtc ccacaacaat tcggaacggg caacttcaac acgttgcacc tgtaacactt 4740 gttacatagt atggacatgg gtacacctgt ccgctacatc tggtacataa accagattaa 4800 tttgtctagc cgaaacaact taatcgccgc tagctagacc aggcttgggg gggcag 4856 // ID Mariner2_PPa repbase; DNA; PLN; 1913 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 2) XX DE Mariner-type DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Mariner2_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1913 RA Jurka J.; RT "DNA transposons from moss."; RL Repbase Reports 10(7), 949-949 (2010). XX DR [1] (Consensus) XX CC >89% identical to consensus. XX FH Key Location/Qualifiers FT CDS 664..1680 FT /product="Mariner2_PPa_1p" FT /translation="MRSIPRSLQDNITSALLHSQKSYGQIASELGCNKATI FT SRLAKKITFNRKNLKLGRPKKLIVVDERTIICQINTRKAENAIEVAKNLNN FT IINNLVSIQTIRNVLKKWNMKAVVKKKKPLLSTRHRKQRLDFALKYKEWTM FT EDWKRVIWSDETKINRFGSDGRKWVWKQKGQSLLDKKIQEIVKHGGGNIMV FT WSCMGWNGVGRMAEVEGRMDAKQFVEILEKNLLPSIEESGIFEEEVIFQQD FT NDPKHNSKLAWKWFDHHGIKVMDWPAQSLDLNSIEHLWEHLKRQLNTWKIK FT PKEVWKLWKRIATEWNNIEAILCQKLIESMPRRLEAVIKAKRGPTKY" XX SQ Sequence 1913 BP; 649 A; 327 C; 356 G; 579 T; 2 other; tacagtgact caaaaaacta tttcaatgtt gacatatttt ggaaagaatg gtgtattaca 60 gatgaattgt agtgaataat gacacgtggt ttgtatagca aataaagtac tcttttacag 120 ctaccaaatg agcctaggtt gaaaagaatc cattaggtaa ttgcggagct atgaccaatc 180 taatttggag tagtattgaa acaatttttt gagtgtggtg tctaattttt ggattctatc 240 aattactcaa tattacaaca ttctatcatc atcagattta ctatganaat attattacta 300 atctaatgac atcattaatg cttactagca gctataaaag caccattctt aatcacaatt 360 cttggcacgg acatattcca aattaccaca ttctaggacc ttctagaatc ttctacaaat 420 ttttagaacc ttttagatac ttntagaatc ttccacaatc ttttagaaag ttctataggc 480 ttctagaagc ttctttagac ttctagaaac ttccatagaa agtaccatag acttttgtaa 540 ccttcattat agtataaata ggagtctttg gaaccacttt tgctatcaat ctcattcttt 600 gtctttaatc ttgacatatt tctttgtcag attcttgtat ccttgacaat tccttgaaca 660 actatgagat ccattccccg ctctctccaa gacaacatca cctctgctct tcttcattct 720 caaaaatctt atggccaaat tgcttctgaa cttggctgca ataaagctac tatctctagg 780 ctagcaaaaa agatcacttt taataggaag aaccttaaat taggcagacc aaagaagctc 840 attgtagtag atgaaaggac aatcatttgc caaatcaaca ctaggaaggc tgaaaatgct 900 attgaggttg ctaaaaacct taacaatatt atcaataatc ttgtgtcaat ccaaaccatt 960 cgaaatgttc tcaagaaatg gaatatgaaa gccgtggtga agaaaaaaaa gccactacta 1020 tctacccgcc atcgaaaaca acgcttggat tttgctctga agtacaagga atggactatg 1080 gaggattgga agagggttat ttggtcagat gagacaaaaa tcaacagatt tggatcagat 1140 ggcagaaagt gggtgtggaa acaaaaaggt cagtccttgc ttgacaagaa gatccaagaa 1200 atagttaagc atgggggtgg aaatataatg gtatggagtt gtatgggatg gaatggggtt 1260 ggaaggatgg cagaggttga ggggaggatg gatgccaagc aatttgtgga aattcttgaa 1320 aaaaacctgc tccctagcat tgaagaatct ggcatttttg aggaggaggt gatttttcag 1380 caagataacg accccaagca taactcaaaa ctagcatgga agtggtttga tcatcatggg 1440 attaaagtaa tggattggcc tgctcagtct cttgatctta attccattga acatctttgg 1500 gagcacctca aacgccagct caatacttgg aagataaaac caaaggaagt ttggaaatta 1560 tggaaaagaa tagctacgga atggaataat attgaagcaa ttttgtgcca aaagttaata 1620 gaaagtatgc ctaggaggtt ggaagcagtt atcaaggcca aaagaggtcc tacaaagtac 1680 tgatatgtaa ttggatacca cactcaaaaa aatgtttcaa tattgttcca aattggattg 1740 gtcatagctc cacaattacc taatggattc ttttcaacct gggctcattt ggtagctgta 1800 aaagagtact ttatttgcta tacaaaccac gtgtcattat tcactacaat tcatctataa 1860 tacaccattc tttctaaaat atgtcaacat tgaaataatt ttttgagtca cta 1913 // ID Gypsy-38_PIT-I repbase; DNA; PLN; 4882 BP. XX AC AATU01001024; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-38_PIT_; KW Gypsy-38_PIT-LTR; Gypsy-38_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4882 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001024; Positions 28784 33665. XX CC 'CCATA' target site duplication CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS join(29..1036,1040..2485) FT /product="Gypsy-38_PIT-I_1p" FT /translation="MTRATRSNPMLPATATTDSSGSSAVPVALFMPLAAPQ FT LKSTSHASLVQWRKLRREYEAEVAMRCNNDADKMAEVLVSVKKSFDNRLLA FT VWCEFDWDVSVDTISDEFILTKIDEIISSVKNNSVPDVAVLFKENVTINMT FT ESDVKERIMQFFARSREFVEEQGWQEFFTGNEGIRLKCKLLMESLQPRCLR FT DGVTTTVKYQARTAKNSEKELFKLILAKVLEQDRDFQRCKRSRTNDHNDRK FT RKDATNDDDSSQPRLKHRKVERSDGKRPAKTVISKQSIKKQKGSKPPTGGC FT LKCKGDHWLTRCPTATDDEKKDLLRKMHERRDSNKGTKSLNADARLKRIKD FT CLLEQEKTIILEERLSMPYCADTGAEKSIISARNLMKLKKLGGLVKTTLLD FT RPIVYETVGKHTIQAKESVLLQIMMHTAAGPVRPVKPYEVLVIEEDEDEFI FT VGEDILGDLGISIDRQLEQLAKQTSTDDGDPIEYNEDFCSGTSPDNAIRQA FT VEGMIANALENGFPAEKEDRLRTIVFMYDIWRLHLGPDPPAKVEPLEIRLR FT KNAKPFRCKPRAYPPHIRKFLKKFDDELVRLGWVFENASSRWACPALPTKK FT PGKDEFRQTSDYRPVDAETEPIAGVMPILHVITEHVKGMSFFGLFDFIKGF FT WQLPLAKASQEILSYMTDAKVYTPTRVPQGCSDAALHFQMTMERCFAKLLH FT KHLLIWIDDLLLYAEDVDTYLEKLSELFSLMDEFSLKLSASKSSLFERSVK FT WCGKLIDGDGVCHDPERVVALREMPLPSNAGELQRFLCACNWMQDSSVSYA FT GHVQSLQKRLDATLGA" XX SQ Sequence 4882 BP; 1340 A; 1107 C; 1310 G; 1125 T; 0 other; aagaattctt tagcagtgaa agccaaagat gacaagagca acacgcagca acccgatgct 60 tccggcaaca gcaacgaccg attctagtgg aagttcagct gtaccagtgg cgttatttat 120 gccacttgct gcaccccagc tgaagagtac ttcgcacgcc tccctggtgc aatggcgaaa 180 gcttcgacgt gaatacgaag ctgaggtggc gatgcgatgc aacaacgacg ctgataagat 240 ggcagaagtg cttgtgagcg tgaaaaagtc gtttgacaac cgacttcttg ctgtctggtg 300 tgaatttgac tgggacgtca gcgttgatac tatcagtgat gagttcatac tgaccaagat 360 tgacgagatt atctcgtccg tcaagaacaa ctcggttcct gacgtcgctg ttttgttcaa 420 ggaaaatgtc acgatcaaca tgactgagag tgacgtcaaa gaacgcatca tgcaattctt 480 tgcgcgaagc agagagtttg tagaagagca agggtggcaa gaatttttca ctgggaacga 540 aggcattcgg ctaaaatgta aactactgat ggagtcattg caaccgcgct gcctgcgtga 600 cggggtgaca accacagtta agtaccaagc caggacagcc aaaaatagtg agaaagagct 660 gtttaagctc atacttgcca aagtccttga gcaggaccgc gattttcagc ggtgcaagcg 720 atcgcggaca aatgatcaca acgatcgcaa gaggaaggac gctacaaacg acgatgactc 780 gtctcaacct cgattaaaac accgaaaagt ggagagatcc gacggtaaac ggcccgcgaa 840 aactgtcatt agtaagcaga gcatcaagaa gcagaagggc tccaagcctc cgacaggtgg 900 ttgccttaag tgcaaagggg accactggct tacgcgttgt ccgactgcta ccgatgatga 960 aaaaaaagac cttttacgca agatgcacga gcgacgcgac agcaataagg gcacgaagag 1020 cctcaatgct gacgcgtgaa ggttgaagcg catcaaggac tgtctcttgg agcaagagaa 1080 aactatcata ttggaagaga gattgtccat gccctattgc gcagatactg gggccgagaa 1140 aagcatcatc agtgctcgca acctgatgaa gcttaagaag ttgggtggac ttgtgaaaac 1200 caccttgttg gatcgaccta tagtatacga gacagtgggt aagcacacga ttcaggcaaa 1260 ggagtctgtg ctgttacaga tcatgatgca caccgcggct gggcctgtga ggccagttaa 1320 accgtacgaa gtactagtga tcgaagaaga cgaagatgaa tttatcgtgg gtgaagatat 1380 tctcggtgat ttgggtatca gcattgatag acaactagaa cagttggcaa agcagacctc 1440 gacggacgat ggcgacccga tagagtacaa cgaggatttc tgcagtggaa cttcacctga 1500 taacgcgatt cggcaagcag ttgaggggat gatcgccaac gcattggaaa acggatttcc 1560 tgcagagaag gaggaccggc tacgcactat tgtgttcatg tacgacatct ggaggctaca 1620 tcttggaccg gatccaccgg ctaaggttga gcctttagag atccgtctaa ggaagaatgc 1680 gaaacctttt cgatgcaagc caagagcata ccccccgcac atcaggaagt tcttgaagaa 1740 gttcgatgat gagctagtcc ggctcgggtg ggtgtttgag aacgcttcta gtcggtgggc 1800 gtgcccagct ctacccacta agaagccagg caaggatgaa tttcggcaga caagtgatta 1860 tcgaccggtg gacgctgaga cggaacccat tgcaggtgtc atgccgatct tgcacgtgat 1920 cacagagcac gtcaaaggca tgagtttctt tggacttttc gacttcatca aggggttctg 1980 gcagctaccg ctggccaagg ccagccaaga aattctcagc tacatgacgg atgccaaagt 2040 gtatacacca acgcgtgtac cacagggatg cagcgatgcc gcgttacact ttcaaatgac 2100 gatggaacgt tgttttgcta aattgctcca caagcatctt ctgatatgga ttgacgatct 2160 gctcttatat gcagaggacg tggacacata cttggaaaag ttgagtgagc ttttctcgct 2220 gatggacgag tttagcctca aactgagcgc ctcaaaatcg tctctgttcg agcgatctgt 2280 gaagtggtgt ggtaaactta ttgacggaga tggcgtgtgc catgatccgg aacgagttgt 2340 tgcactacgc gaaatgccgc taccttccaa tgcaggagaa ttacagcggt ttctttgcgc 2400 atgtaattgg atgcaagaca gctcggtgag ctatgctggt catgttcaat cgctacagaa 2460 acggctcgat gcgacactgg gagcttgaaa acggaccaaa cgcgctgcag caaagctacc 2520 ggtgaccttc acagacgaag agcgagccgc atttgataat gtcaaggact gtttagctac 2580 tgcagctaca ttggcacacc cgagttcaga gggcgtgcta tcagtattca cagacgcttt 2640 agacgtagca tggagtgtca ttgtgacgga tgttgagacg tgggaagagg gcaaaccgat 2700 tgcagatcag aatcaccgac tgctacactg tctaagtggc acgttcacag gctcacaaga 2760 gaattggagt gtaatcgaga aggaggcttt cgcgatagtg gcagcgtgcg acaaattacc 2820 ccacctccta ttgcgaccta cgggctttcg attacactgt gatcaccgca atttaatcca 2880 cgtgttcgcc gcgcacgaca ctgtgaagaa gcatgtacgt gggaagttgc ttcgatgggc 2940 aatgagactt ggagaattcc ggtatgagat acatcacatc gccggtgaag acaatgtttg 3000 ggcagacatg gtatcacgtt gggcacgtac gccaacatgt accagtttac gcagagtcac 3060 aacacgcagt cagcgccagc atgaccaact gctactacgg ccacttgacc aagaaggttt 3120 tgtgtggccg acactagatg ctatcgtgaa tgctcaacgc aaggttggat ccaaggacat 3180 gccagacggc ctagaggaag gtgatgacgg ggtccaacgc aaagacaacc ggttgtggat 3240 cccaacagag gctattgaac tactccaacg cttgtgtatt attgcacatt gtggtcccca 3300 aggccatcgc ggtagggacg cgatgttggc ccacttggga cgcgtctttc acgtgtccca 3360 gttacgccaa tgcgtagacc gatttctggt gcgctgccta ctctgccatc atgttaaggg 3420 ggggggggaa gatagtgcta agaccctgga gcgagactta ccggaccaat gagcgaaacc 3480 aagcgcttca ctgggatttc ctataccttg gtgaatcatt tggtgacttg aagtatgtat 3540 tggtgctgaa ggatgatgcg agtcactact gcgaattggt taagtgtgat ctacctacca 3600 gtaccgttgc ggctgatgct attatggagt ggcacagtcg ttttggcatt ccgaaagatt 3660 ggatcagtga ccaaggatct cacttcaaga atgaagtgat tgaggatatc tgtgctagac 3720 tcaagtgcaa acaaatcttc tcgccaacat acagcccatg gatcaatggg tctgtcgagc 3780 gtgtcaaccg agatattttg caagtattaa gggtctgata ctagactaca agatcaacca 3840 tcttgattgg cccaggctga tcccggtcgt gcaggccagc ctcagccata ctgcagtgcc 3900 gtcactggcc aacaaaacgc cgagcgagtt gttcaccggc ctggaggccc tttcgccttt 3960 gcaagcggtg ttcctcgggc ctgaagtggc tccaagtgta cagccaactc gcacttctgc 4020 taacagtgaa gaaagcttgg cccgattgcg aactagtgtg aaagacatgc acagagcagt 4080 tacagacgcc cgcctcaagc agacactgct taacaagaaa aaggaacgtg gcgacaccat 4140 cgtcaacttc aacgtaggcg attatgtact gcgatcacgt gtcaatgaga agagacagat 4200 aaagctgctc gtcacatgga tcggacccta ctcggttatc acagcggaac cacacaacgt 4260 gttcaaggtc aagcaccttg ttactggtga agaacttgat gtacatgctt cgcggctaaa 4320 gttcttcgct gacaaggacc tcgaagtgac tgaggaactc ctggagcacg tggctgccca 4380 gggcattatg cttcgcgtgc gcgagctaat gcaacatcgt tggaatgacc aaagtcgttc 4440 ttacgaaatc cttgtcgggt ggcaaggttt aaaagcaatt gaggactcgt gggagcctct 4500 tacatcccta aacaaagacg tgagtgcgtt agtgaaagga tatgttgctt cggccaaaga 4560 cgctaagctt gagaaccatt ttaaaaccct agaagcgtag gcaaaacggt attggcgtgt 4620 atgtgtgtat acccttggta taatgactat atagtcacta aattaaggtt ttaccttgat 4680 gctgtgattc ttttggtcaa tatcttgagt aatatgcatg gtcaagtcaa cttcaacggc 4740 aacgtgttga agttgcactg gttatgtcat atatttatac tgacgtgatc ataagcctaa 4800 cgtcatcgag tggtggtaca cgaaatatat ttcgtacaag ttgcaatttt accgtgtggt 4860 cggattggtc ttggaaaggg ac 4882 // ID Gypsy-11_ES-LTR repbase; DNA; PLN; 301 BP. XX AC CABU01001806; XX DT 08-FEB-2011 (Rel. 16.02, Created) DT 08-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_ES_; KW Gypsy-11_ES-I; Gypsy-11_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-301 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01001806; Positions 9393 9693. XX SQ Sequence 301 BP; 68 A; 73 C; 77 G; 83 T; 0 other; tgttaaggag gacccgattc gcagggtatc cgtcgattga cttttaccag aatcggtaca 60 ccttcgcata tggcgtcagc ggcaggatac tggttcgaat ctccttgggt gcacgttttt 120 tctcctgact tggacatttt cccatggaca ccatgtgtgt cagtcctgag aacacctctt 180 ggaatcgatc ctataaagaa ccttgtgaca cttccatcga attacccgtc ctggccacaa 240 gaggttccca gttgagggta aattctgtgg gtggagagtg ttaaggagga cccgattcgc 300 a 301 // ID ALISEI_LTR repbase; DNA; PLN; 342 BP. XX AC . XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Picea abies gypsy-type retrotransposon ALISEI_LTR, long terminal DE repeat - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ALISEI_LTR; KW Gypsy superfamily; Long terminal repeat; retrotransposon. XX OS Picea abies OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea. XX RN [1] RP 1-342 RA Cattonaro F. and Morgante M.; RT "Direct submission."; RL Direct Submission to Genbank (13-MAY-1999). XX RN [2] RP 1-342 RA Jurka J. and Drazkiewicz A.; RT "ALISEI_LTR: LTR from gypsy-type retrotransposon ALISEI from RT Picea abies."; RL Direct Submission to Repbase Update (10-OCT-2002). XX DR [2] (Consensus) XX SQ Sequence 342 BP; 85 A; 52 C; 63 G; 142 T; 0 other; tgttaagccc taatattggc tcattacccc ttaattgggg catattagat tagtaatgtt 60 attttattta tgtcggcttt aggccattag ttgtaattta gattagtaat gttattttat 120 ttatgtcggc tttaggccat tagttgtaat tatacctcct agtctcctat atataccaag 180 gagacatttt cattttgaat catcttgtac ttgaacattt aagtggggta aaaggaggtt 240 gccccctcga agaggcttat tatctgaaat tatctctttt tcaaggcgtt gagtactttt 300 cctgaggttt ttctatgcta tattgatgtt tggttcttaa ca 342 // ID Copia-3_ES-I repbase; DNA; PLN; 7830 BP. XX AC CABU01003056; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_ES_; KW Copia-3_ES-LTR; Copia-3_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-7830 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01003056; Positions 13303 21132. XX CC Positions [4161-4661] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1669..3048 FT /product="Copia-3_ES-I_1p" FT /translation="MAQDSKHFQLLRSLHKFSGRDTEYPEWKYTTRRTLAL FT YRPNINTQLGENWRPTPIYELHDECDDGDQDDGDQDGGDQEHEDHEDTGDR FT DDQDSAYQEALQQLRSAESASVEAREKAALARKVLTDADEEQKTITRAMKD FT ASDTAERLAVQAETVVRLYKEQLPRKRSSQGQQEPRTRRTALRSSSIGRSR FT SIVNQQELDEFEEADSQLFNILYHILIGPAKSVLRRRAPVDESSGSGLAVW FT KELESKLQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIG FT GTVTDEKLGDIILQGLPAEYHLIRYHASSRNEYNDLADITQTARNMWYNRN FT RKDGAITTFKDRRSSARDAGYSAITEAPRQPRRRDGGYSTPSYNGDAVECY FT NCHRLGHVQRNCPELVAELLHETTAAAAETGEMDTIFNSDRGITMGFEDPT FT TVISSDRDPADLYDK" FT CDS 2844..4004 FT /product="Copia-3_ES-I_3p" FT /translation="MLQLPPFGACSTELSGASGRAPTRNYSSSSGNRRNGY FT YFQQRSRNNNGLRGSNNGYQQRSRSSRPVRQVRDRPTRRQQQQRQRKWCSL FT HNTHLHDDSECRAQQQDGMGTRHASTGRGEGRQQKKHKGRDRLTLFATKSK FT TGMVLGFSTPRMYNGDHQTINRAATAHEETRGSAHNRNVRTTSQPTEETVV FT EGYNGNLGYPCVSRMEMAAQRAAYVEFDQGKFNLLVDSGASGHYLDSDLLP FT DLENILDDFTYITTPTKIIGAGGIELEAISEGIINVFAKDGEGNDRRVRFK FT CTVVPGLGRHLFSTGTAQKKGANTIMSDQPRIELPTTSRDESRIALVLREV FT GTLYFLDVRLDTSQRERRQRIHEENMNTYEKAYIAVPRAEPYNL" FT CDS 4526..6109 FT /product="Copia-3_ES-I_2p" FT /translation="MFNAWRTTTGVSMGRVVLHGGTHYESPAACTSEQRDA FT LLPDVWKTSFATTSTGYRIVSVRTRRNVQVSKLANRAWPGILVGYSPNSNA FT YRIYNPHTKRIVPSRNVTFIEPMDAAMPPVIPTIEVLRDYEPENELSVSAD FT VDIPGNEGEVKDNSKYEEDYYEEEGQQEQEQEQEQEQGITPRMHLRSSGRN FT TDIQQATNNKRQQAELRRLSPWNKLATFVDQDQDQDQDIRIKNPSAGEPVR FT PPASIPVPTTYQEAMRSVDANQWKAAMDKEMRSLKDHDVADLVPIQSLPPG FT AKPIGSRWLYKMKATRVMKARLIDQGWRQRHGIDCGGTYAPVSRFSSQLVL FT MAIAAERGYVVETMDVVTAFLQSKVAEEVYVHQAKGYEIMDEVTGLPLVMK FT LKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCV FT YVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELQCTTRDGDFSERRRN FT RSEPTHICDEHTGQVSNEGLQISGDSRMRARN" XX SQ Sequence 7830 BP; 2404 A; 1799 C; 2098 G; 1529 T; 0 other; tggatggcat gctaactggt gtctgaagaa caacgaggcc tcggcagaac aagaccttcg 60 tcgaagcagc ggaccagcga ggactgaaga ccgccgacaa catcagcaga ggagacaaga 120 tagtacggcc agtggcagca gggatcgcta ccctactgcg ctgaacaagc acccccggga 180 gtgggctgga gactgctcgg cggaatacaa gtctaacaac tgcgttcacg ctagatgaag 240 acttgaagca gcaagcaccg gacgggcatt gagggccctc accccgtgac cggtaagtcg 300 taggccagcg ggagcgtgat catttcaccc cgtacacgac ggacgtcagg aaagtcctgc 360 cgtgagtatc ggctctgtgt agtggcaacc tctccgctga caaaatttaa attgttgcgc 420 cgagataagg tcacgcggca ggcaggtacg ccaccaaacc gagtctatag cctgtacact 480 atacactcag gtgagcgata atccctacgg gcagtaaagc ggcgggggtg gagcgagcgc 540 gatttccaac ccgtgtaatc gagaactgcg gtcggtgaaa tttgagtcct gatccggcta 600 aattcacacg acgtctcggt ggaattggtg acgctgatcc cgtcacaacc acgcgagaac 660 cccaccggta gaagaagatc tccaatcggc gcgggtctac gtcctgacag agtagacagc 720 gcggctgcgg accaccctac attaataagg agctaggtgc tgggcaacaa atttccttca 780 tcgagagcag caggagtcac tgcatctaca gagaaaggag gagctgcatc atctgcagca 840 gaaggaaatt cagccaagac tagagataag tcttatcatc aaccatcaag gtcaccgagt 900 gggttgccgg cacacatacg catctcagga agtaagccgt taagccgaag aactcagcag 960 tcacactacg cactagtctg acacggaaag ctgcagttgg aattttctcc cgaaccctga 1020 agtttaagct ggtggattgg ccagcgcttc acaaaagggt tgcgcgagaa agaagggact 1080 gtacgacatt tccccggacc ctgaagagag ctggtaactt gtgcagcact tcacaatagg 1140 atcgcggtgg aagacaagaa ctgttcgaga caagaaaagg agcagttcga cgtcacagga 1200 atttccccga accctgaagg caagctggta acgtggacag cacttcgaca aatagggtgt 1260 cgctggaaaa atatcgagag agctgttcga aaagagtttc ccccgaaccc tgaaggaagc 1320 tggtaacttg gacagcactt cgacaaatag ggtgtcgctg gaatacgaac cgagctcgaa 1380 cgacgacaag tacaccactc tgagcaccgg aggtcgcgcg gaaacgagaa ttgtgccagg 1440 tttggccacc tgcatcagca attcaagtcg acattacaac gaagagtaca gttctggaaa 1500 aggaagcctc aacatctgag caagaagcct caacatctga gcaagaagcc tcaacatttg 1560 agcaaggaat ttgacggagg aacaattcaa gggaattgga aaaggagaaa ctactggaag 1620 gagagcctcg gcatcagcac ctggcaccag tacccacaag gatcgaccat ggcccaagac 1680 agcaagcact tccaactgct gaggagcctg cataagttca gcggcaggga tacggagtat 1740 ccagagtgga agtacacgac aaggaggact ttggccttgt atcggcctaa catcaacaca 1800 caactagggg agaactggcg ccctactcct atctacgaac tacacgatga atgtgatgac 1860 ggtgatcaag atgatggaga tcaagatggt ggagaccaag agcatgaaga tcacgaagac 1920 actggagacc gtgatgacca agactctgca taccaagaag ctctacagca gctgcgttca 1980 gcggagtcag catctgtcga agctcgagaa aaggcggcac tcgcccgcaa agtgcttact 2040 gatgctgacg aagaacagaa gaccatcaca cgagcgatga aagacgcatc ggatactgct 2100 gaacgactgg ctgttcaagc tgagaccgtc gttcgtctgt acaaggagca actaccacgg 2160 aagcgttctt cgcaaggcca acaggaacca cgaacgagac gaacagcttt acggtcatca 2220 tcaatcggac gttcccgttc tatcgtgaac cagcaagagc tggacgaatt tgaggaagcc 2280 gattctcaac tattcaatat cctctatcac atattgattg ggccagctaa atctgtgtta 2340 cgtcgacgcg cgcctgtgga tgaatcgagt ggcagcggac tagctgtttg gaaggagctg 2400 gaatctaaat tgcagcctgc cgatgaacac cggcggagaa acctggaacg agaattggaa 2460 tcagctacca tgcgaactgg tactgatcca gacatattca tcacccatgt ctggcatctc 2520 gcggagcaac tacgcttcat cggagggacc gtcaccgatg agaaacttgg ggacatcata 2580 ctacaaggac tgccagcaga gtaccacctg attcggtacc atgctagttc gaggaatgag 2640 tacaacgatc tggcagacat cactcaaacg gcgcggaaca tgtggtacaa tcggaaccgt 2700 aaagatggcg ccatcacgac atttaaggat aggaggagtt ctgctcgtga cgcggggtat 2760 tcagccataa cggaagcacc tcgtcagcca agacgccgag atggaggtta ttcgacgcct 2820 tcatacaacg gagatgcggt ggaatgctac aactgccacc gtttggggca tgttcaacgg 2880 aactgtccgg agctagtggc cgagctccta cacgaaacta cagcagcagc agcggaaaca 2940 ggcgaaatgg atactatttt caacagcgat cgcggaataa caatgggctt cgaggatcca 3000 acaacggtta tcagcagcga tcgagatcca gccgacctgt acgacaagtg agagaccgtc 3060 ctacgcgtcg gcagcaacaa caaaggcaac ggaagtggtg ttcgttgcac aacacccacc 3120 tgcatgacga ttcagagtgt cgtgcccaac aacaagatgg tatgggcaca cgacatgcat 3180 caacaggacg aggagagggc cgacaacaga agaaacacaa ggggcgagac aggctaaccc 3240 tgttcgccac caagtccaag acagggatgg tacttggatt ttcaacccca agaatgtaca 3300 acggtgatca tcagactatc aacagagctg caacagctca tgaggagacg agagggtctg 3360 ctcacaaccg gaatgtccga actacgtcgc aaccaactga agagacagtg gttgaaggtt 3420 ataatgggaa ccttggatac ccatgcgtca gccgcatgga gatggcagca caacgagctg 3480 cttatgtgga attcgatcaa ggaaaattta atttactggt ggatagtgga gcatcgggcc 3540 actacttgga cagcgacctg ttaccggatc tggaaaacat attggatgac ttcacgtaca 3600 tcactacgcc aacgaagatc attggtgctg gaggaattga gcttgaagcg atcagtgaag 3660 gcatcatcaa cgttttcgcc aaggatggcg aaggaaacga caggagagtg cggttcaagt 3720 gcacagtggt tccagggcta gggcggcacc tgttctctac tggaacagct cagaagaaag 3780 gtgcgaatac gataatgtca gatcaacctc gaatcgagtt gccgactact tcgagagatg 3840 aatcaagaat cgccctggtg ttacgagaag tggggacgct gtacttcctg gatgtgcgac 3900 ttgacacaag ccagcgtgaa cgaagacaga ggatccacga ggaaaatatg aacacgtacg 3960 agaaagcata cattgctgtc ccacgcgcgg agccatacaa tctttgacat cggcgtttgg 4020 cacattgcca caagggcatc attcaggcag cagcgcgcat taaagaaact ggagttaagc 4080 tcacggacaa cttggacccg tgcgagacct gcaaacttca gaagagcacc caaaggaagc 4140 accccaaaac ggcacagcac actaccgttc aaccatgtca acgggtgtac acggatctgc 4200 tgggaccaat ttcgccacct gcaaagggcg gattcaacta tgtcagcaaa ttcacggacg 4260 aatattccag aatgaatgtg gtgtacctga taaggaccaa ggacgaagcc atcgacacac 4320 tggaacgatt tattgacgac atcgtcatac cgcatggttt tcgactggag cgacttcgga 4380 gtgactgtgg aggagagtac acagctgagt actacaagaa gttctgcaaa acaattggaa 4440 tcgtccaaga atttacggca ccggcaacac cgcaacaaaa tgggataagc gagcgtgctg 4500 gacggacgct catgaacatc gttcgatgtt taatgcatgg cggacaacta ccggagtatc 4560 tatggggcga gttgtgctgc acggcggtac acattacgaa tcgcctgccg catgtacatc 4620 tgaacaacga gacgccttac taccggatgt ttggaaaaca agcttcgcta cgacatctac 4680 gggttatcgg atcgtcagcg ttcgtacacg tcgaaacgta caagtctcta agcttgcaaa 4740 tcgagcttgg cccggaatac tggttgggta cagccccaac agcaacgctt atcggattta 4800 taatccgcat accaagcgca tcgttccatc gagaaacgtg actttcatcg aaccaatgga 4860 cgcggccatg ccgccagtca taccgaccat tgaggtacta cgcgactacg aaccggaaaa 4920 cgaattatcg gtttccgcgg atgtcgacat acccggaaac gagggggaag tgaaagataa 4980 ttcgaaatat gaggaggact actacgagga agaaggacaa caagaacaag aacaagaaca 5040 agaacaagaa caaggaatta cacctcgcat gcacttgcga agcagcggaa ggaatactga 5100 tattcaacaa gcaacaaaca acaaacggca gcaagcggag ctacggaggc tatcgccatg 5160 gaataaacta gcgacttttg tcgaccaaga ccaagaccaa gaccaagata taagaatcaa 5220 gaatccatca gccggagaac ctgtccggcc gccagcatct atacctgtac ccactacata 5280 tcaagaagcc atgaggtctg tggatgccaa tcaatggaaa gcagctatgg acaaggagat 5340 gagaagcctg aaagatcatg atgtggcgga tctagttcca attcagagtc tacctcctgg 5400 agctaaaccc attggatcga gatggttata caagatgaaa gcaaccagag ttatgaaggc 5460 aagacttatc gaccaaggct ggagacaacg gcatggaatc gactgtggag gaacctacgc 5520 acctgtgagt agatttagct cacagctggt cttaatggca attgcagcgg aaagaggata 5580 cgttgtggaa acgatggacg tggtgactgc atttcttcag agcaaagtgg cagaagaagt 5640 gtatgttcat caagctaaag gatacgaaat aatggatgaa gtgacgggat taccgctggt 5700 gatgaagctc aagaaaagct tatacggatt gaagcagagc cctcggaact tcggcaacgc 5760 atttgccaaa ggaataaaag aaatcgggtt tactgctcta ctgagcgacc cgtgcgtata 5820 tgtgtacggt gctggaccga catatgccat actatgtgtg tacgtggacg actgcacact 5880 agctggaaag acaccgagcg tggttcaaga tttgaagaaa caactatcgg acaaattcaa 5940 gatgacggac ggaggaccag cggaactaca gtgtactact agggatggag atttctcaga 6000 gcgacggaga aatcgcagtg agccaacaca tatatgtgat gaacatactg gacaagtatc 6060 aaatgaagga ctgcaaatca gcggcgactc caggatgcgg gccagaaatt gaacaagagc 6120 cggagaatgc tatatatcta agtgacgagg acaagaaact ctaccaggga atagtcggaa 6180 gtctcctctt cttgactaac acgacgagat gggagattgg atatgccgtc atgatcctgt 6240 gcagagggat gaacaagcct accaatcaac ctatggtcgg agcaaagaga gtgctgcgat 6300 accttcgagg attcccggat atgccactaa agttcaggag agggcaatgg aacctgaagt 6360 gctactgtga cgcgaacttc gctggatcgg gcgagagact tcagaagcgt tcttctactg 6420 gatatatttt catacttgcg ggaggcgtca tcagtgcagc atcaactctg cagaagctaa 6480 cagcacaatc aagtgtacat gccgagatca tcgcgatggc tacagcagca agggaagcaa 6540 tttatctgca aggtgtatgt actatcggaa cttggatttc catgcggcaa catcccgctt 6600 cattcggatt caacgggagc gctgagcaca gcaggaaact ccatgtttcg aggccgcagc 6660 aagttcatca gcacgagata ctggctactt cgccagaacg tcaaccaggg aaacattgtg 6720 ctaaagttcg tgaggagtga ggagcagctt gcggacatat tgaccaagca tctggaacgt 6780 gtccaattcg tcaaactgcg gacattggtt caagaacatg gaggatctac gaaataggag 6840 atttcatgcg gcggaactgc agatttcaga tgtataaggg tataacgaca gcacgagaaa 6900 gctggtgcga cgactacaca ccaaccacaa ccgagaagaa caagacagga ctacctggac 6960 aacaacgaca cggaaataca tcacatacaa gacaggacta cctggacaac aacgacatac 7020 aagaccaaca agaccaagta ggcgtacttc ctggacgaca acaacaacaa caacaacaac 7080 agcgtcatca tcgaagacgt ctggagacac aacaacggct taattgctac actggagaag 7140 gagacgggat gagaaggaaa gtcatgacgt atgaaatagt tataccgaac atcagcaacg 7200 tagagaagag tgaattttgt gaaaataaag tgaatcccgg gcatgtacat cacagacatg 7260 atttttgctg cagggtcatt ctgtctacta gatagaagaa tgaacggttt ttttacgaat 7320 aggtgtttgt gatacttcgt atgacgtgtg attctggtaa ggtaaaataa ttggccagat 7380 gaaagagaaa tgctgtgata gaggtatgtg tttacgtacg tgctaagagc gtcgaggtac 7440 agtagtatgc gacgaatgaa aggtttacta tggtcattca accgtagtca atgtatttca 7500 ctactgtaga aacagttaag cgcagttttt ttttagttga gcaaacttgg ggacgaaatt 7560 ctgatctttg ttcgctgaat gcggggagag aataagaaga taaggagaag aagataagga 7620 cgattttttt tggagcagga tagcagctga acaggcagtt gttgaagcat gagtaacgcg 7680 cgtaccgtta tacaaattgt gggggcgtgt gtaatgtaag agtactgaat tgaagtaggt 7740 gcgtaaaaga cttgcaggat ttatgcagta gatttagaac aacactgggg ttgttgaagt 7800 gcacgtaaca ttgcatccat catgggggcg 7830 // ID Gypsy-55_PIT-I repbase; DNA; PLN; 7664 BP. XX AC AATU01005141; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_PIT_; KW Gypsy-55_PIT-LTR; Gypsy-55_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7664 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005141; Positions 17850 25513. XX CC 'ACCC' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 5628..7016 FT /product="Gypsy-55_PIT-I_4p" FT /translation="MEEATVRSDSGKLRGQRRVRFDLPGPDGTAKRPRTTA FT VVIERERDDGGRLEPTAVTARRRPARAEVRAEGTGNRCRTLTAARSTQRLD FT EVERGDADEQCYPIRGPDGLQESQVMDGVMRVPVSEDARDQLEQRRPPTLQ FT LTDAAVIAAQSRSRLVQRVVKAREYRGMTVEVRHNLVSIKTPRGRRVVLPP FT ELWPVAFKVHHDSVWAGHLRAPHTYERIAAHNWWPDLQREVKLWVRGCQAC FT GSRKAKPREVIPPLRSIRGGDVGDRWALDVAGPLPVVGGGQRYVIAAVEYV FT TRYAVAKTVKRHTAENVARFLMEEVVLKFGVFRELLTDGAPELTGLVIEKF FT VVMLQAEQINPVPYRPQLIGLVERFHRTWKDCVATYMQSDAQNDWATWVSF FT AVYAYNSGRHSTVALSPNELMMGRRLRSPNELLSVSGVTEAGELSDYHRQL FT VAAMKKSYEVAESARARE" FT CDS join(2172..3734,3738..5429) FT /product="Gypsy-55_PIT-I_2p" FT /translation="MTDPRQPEQAKSGDAAIGCDTGGEEAVSERPETTAEG FT DELSGGADEVAGVDAVMQCMKADVMLEDKERAERSRVTVRPAMAAARYVRT FT EGDNGSRTEGADGVVSSQADLRAGLSTEVAAKDGVSSADGGDDSVARVLIT FT RRKARRAVKRQQVKRVVERRRSRDEEAAEEKERLNKERQAARRSEREQAMQ FT ELEERRVAQGDEAVVRDGGELAKVRLVQRRQLVETLNVMNDADVEYIGADD FT GLPTARMVVDGVPRDVKMDSGARYTIAGTDWMQHGDRVQRAAPVDYVEGIG FT EFLLDVVGVWRFHLRNVFDEDIVVEACIVAGCSDEFLLGVDFMSSRGATMD FT FHSNEVRYRDNGRLVTIPFRTYDKEGSARIAAVRMARRMQLRDSTVTPVEV FT AVAAGDGERGIFVPTQHTGPVMLAATVTRARNGKAWIPAINSGGGETCLPS FT KRELSKWIPLDEDVEVLAVRGKLQREQVLTWLGELGDVGTPLANEDEVRIG FT EKDEDTRELVMRLLRAYRKTTEDTECPPATTLNVEHHIDTGDAAPTMLKRR FT RLAQTDDPVVTSNVTKMLGAGVIEEGEGAWGFPVVLVKKKDGEVRFCIDYR FT ALNKVTKKDVYPLPRIDETLEALGGVVLFTTLDLKAGYWQIRVAEADRPKT FT AFTTKQGLYQFVRMPFGLTNAPSTFQRMMNSVLRGLTWLTCLVYLDDIVVF FT TRGDIERHVVEVACVLKRLAAAGLTLKLKKYVFATRKMEYLGHELSSDGVR FT PLERLVTAVRDFPRPVDAVEVKRFVHLAGYYRRFIEGFGSLMAPMTKLLRK FT DAEWEWTPAQESAFEYVKMILTTKHLLIYPNFKLPFRVVTDASKVGLGACL FT MQDHGNGWKPVAYASKVNSPTEANYGITELECLAVVWSVKLFRPYLYGRTF FT TIVTDHAAIKLLMTSPNLTGKLHRWALTLQEFEFTVEYRPGSTNVGADALS FT RAPAVVAAAVGRRRRSRQRAANGDSGGTASVAAVGTRNAAAGVVVDAVSDA FT RTETDAGVGYDDEVRLASEVRADLGRDGAVEAQPAPTAEERLTAVNEDGVV FT STTNDGALARGSVVAASECSGGGSRQME" XX SQ Sequence 7664 BP; 1821 A; 1752 C; 2745 G; 1346 T; 0 other; tggtggtcat accggggcct aaagcaagca acctacgagc agtacaagac gaaatggcga 60 ccacgaggac gagaacgaag gcggcagcat ctaaggcaac gaaggtgaag actcggactt 120 cactacggta cgcgaaaggc tagaaacgtg gtcacgacaa ggagacgacg cgagacgttc 180 ctgctggaga tggagatggc gaggacagca cggagaatcg acaggaaggc gctacgcagg 240 cagagtctgt gtctgaacgc acggtgttga ggctgaaggc ggcgaatgac ggcgttgcgg 300 tacaattgca cattgaagtg ggcgacgacg acgcgcaccc aatcccaacc gaccattcgc 360 ctctcaataa cgatcaggcg gcagagagtg caataaggta cgcgcgagaa gagacaggag 420 atgacggggc accggtacag gacaggacag tttcgcaatc gacggtggac gcgatggctg 480 caactattgg cgaattacgg gcgatggtga cacgtctgca ccaagatccg agcgacgctg 540 ggcacgatgc gcggcagtcg gagcgccagc ggactcggga ggagccgaga cgacgcagct 600 cggggcgtac gaggcgacca aggcgtcatg acagcgggcg tgacgattct gaggaggaag 660 gagagcaacg gcggcgaagc acggcgcgac gttcggcgcg agcgaggtcc tcggggtcac 720 tcggagggga cgacagcagc gacgactcag gcggtgcgtt cagtggcgac tcgagcagct 780 ccagcagctc gagtagtgag agtgaatcca gtgacgacga tagcagtgag agcgatgata 840 gcgggagcca gtccgaccct gacgagggct cgaggcagtt gaggcggtca cactggcgac 900 gagagcatcg aaaacggcac gaacgacaag agcggagggg acaatgggcg cccgctaaga 960 ggagtgtgaa ggaccttgaa ctccccacgt acacgccctt cccgaaagtg tccgtatcca 1020 cgtggatcga ccgcgtcgat ttggcgttga aaggtgcgga ggagtctgga cgaggtcagt 1080 ggacagatag ggcgctctat tttatcctcg ggaacaagct gatggagaac gctgcacggt 1140 ggtgggtcaa catggatcgt aggcttcccg atagcaagcg gacatggtcg tacctgaagc 1200 aatcgttgca gcgacggtat ggagaaagac tggataaatc ggcggcggaa tggcgtgtta 1260 atgggcggcg tatggctccg ggagaaactt atgcggacta tgcggcggta cttcgagacc 1320 tcggcaagaa taaggtgagc gagcgtgtcc tgttggcaca gttttactga ttcctggaca 1380 agacaacgag gaaactggtg cagcagcgac cgaagccgag gacgttagag agggctgttg 1440 cgaaagccac gaagatcgac gacccgttgg gtaatgtcgc gcagggcatg atgaacatcg 1500 ggcaggcatg ggccactgcg ccgaacccat acatcatacc catggcaggc acgatgggac 1560 agacgattgg taattccagg aattggtgga gcagggctgt catccacgaa ggggcatggt 1620 acggagtcag tggataatga ggtcgggagt atggctctct tcacgaaccc acagggtgtc 1680 tggaacgctt attcgggtac gtgggatgtg ccacccggac acacgtggag cgggaagtac 1740 tgggaggcgt cgaagcgcag ccagaggaat ttgcagcagc cagtgggtaa gaagacggag 1800 cgtaaggggc ggcgtcagcg cgatcgggac tcaagcgacg aggaatcaga cggcttaccg 1860 gtgaagaaga agctaaaggc ggcgtttcga caggcgaagg gacaagacgg tgaccccacg 1920 gcggcgggag cactcagagg cggtgatacg gtgatgtgct tcggctgtaa gcaacccggt 1980 catatcagac tacactgccc aaacccgccg aagtgctttg cgtgcggcga gcccgagcac 2040 ttcgcacggg attgcactaa ctcagaggcc aagtcacgca atgacgagta catgaagcgt 2100 cggacaggag cggagaagcc gtcggaagac tagaagcggg cgcagtgacg ggaccacggc 2160 gtccgacatc aatgacggat ccccgacaac cggagcaggc caagagcggt gatgcggcta 2220 ttggttgcga taccggcggt gaggaggcgg tgagtgagag gccggagacg acagcagaag 2280 gtgatgagtt gagtggcgga gcagacgagg tagcgggggt ggatgcggtg atgcagtgca 2340 tgaaggcaga tgtgatgttg gaggataagg agcgtgcaga gcgctcacgg gtcacggtgc 2400 gaccagccat ggccgcggcg cgatatgtgc gaacggaagg tgataacggc agccggacgg 2460 agggtgctga tggcgtggtg tcgagtcaag cagatttgcg cgctggactc agtacggaag 2520 ttgcagcgaa ggatggcgta agcagcgctg acggcggaga cgacagtgtg gctagagtgt 2580 tgataacccg gcgtaaggcg cgaagagctg tcaagcgtca gcaagttaag agggtggtgg 2640 agcgtcggcg cagtcgtgac gaagaggcgg ccgaggagaa ggagcgtctc aataaggaac 2700 gtcaggcggc gcgtcgctcg gagcgagaac aggcaatgca ggagctcgag gaacgcagag 2760 tggctcaagg tgacgaagca gtagtgcgag atggtggaga gctggcaaag gttcggttgg 2820 tgcagcggcg gcagttggtg gaaacactaa acgtgatgaa cgacgccgac gtggaataca 2880 ttggtgcgga cgacgggttg ccgacggcaa ggatggtagt cgacggcgtt ccacgagatg 2940 tgaagatgga cagcggggcc cggtacacga tcgcgggcac ggactggatg caacatggag 3000 accgggtgca acgtgctgcg ccggtggatt acgtcgaagg tatcggagag ttcctactgg 3060 atgtcgtggg agtgtggcga ttccacctac ggaatgtgtt cgacgaggac atcgtggtcg 3120 aagcgtgcat tgtggccggg tgctcggacg agttcctgtt gggagtggac tttatgagta 3180 gtcgtggagc cacaatggac ttccatagca atgaggtacg ctaccgtgac aacggacgtt 3240 tggtgacgat tcccttccgg acttacgata aagaaggaag tgccaggatc gcggcagttc 3300 gaatggcacg acgaatgcag ttgcgtgaca gcactgttac tcctgtagaa gttgcagttg 3360 ctgctggaga cggtgagaga ggcatatttg tgccgacgca gcacaccggc ccggtgatgt 3420 tggcggccac ggtaactcgg gcgcgtaatg gtaaggcgtg gatcccggcg atcaactcag 3480 gcggtggtga aacgtgtttg ccatcgaaga gagagctgag taagtggata cccctggacg 3540 aggacgtgga ggtgttggcg gtgagaggga agttgcagcg tgagcaagta ctaacgtggt 3600 tgggcgagtt gggcgatgtg ggcaccccgt tggctaatga ggacgaggtc aggatcggcg 3660 agaaagacga ggacactaga gagctggtga tgaggttgct gagggcgtac aggaagacca 3720 cggaggacac tgagtagtgt ccgcctgcga cgacactaaa tgtggagcac cacatcgaca 3780 ctggagacgc ggcccctacc atgttgaaga gaagacgatt ggcgcagact gacgacccgg 3840 ttgttaccag caacgtgacg aaaatgcttg gtgccggtgt tatcgaggaa ggagagggtg 3900 cgtggggatt cccggtggtc ctcgtcaaga agaaggatgg cgaggtacga ttttgcattg 3960 actacagagc gttgaataag gtgacgaaga aggacgtcta tcccctgcca aggatagacg 4020 agactctgga agcgttagga ggcgtcgtgc tgttcacgac tttggacctt aaagcgggct 4080 actggcagat aagagtcgcg gaggctgatc gtcccaagac ggccttcacc accaagcaag 4140 gtctgtacca gttcgtgagg atgccgttcg ggttaacgaa cgcaccctcc acgttccagc 4200 ggatgatgaa tagcgtgctg cggggactta cgtggttgac ctgcttagtg tacctggacg 4260 atatcgtcgt cttcacgcgc ggcgatattg agcgtcacgt agttgaggtg gcgtgtgtat 4320 tgaagcgtct ggcggctgcg ggattgacgt taaagctgaa gaaatacgtg tttgcgacgc 4380 ggaagatgga gtacctggga cacgaattga gctcggacgg cgtgcggcca ctggagaggt 4440 tggtgacggc ggtgcgagac ttcccacgtc cagtcgacgc cgtggaagtt aagcgctttg 4500 tacacctggc gggttattac cggcgattca ttgaagggtt cggctcgctc atggcgccga 4560 tgaccaagtt gttgcgcaag gacgcagaat gggaatggac accagcgcag gaatcggcgt 4620 tcgagtacgt aaagatgatc ctaacgacca aacatttgct gatctatccg aactttaagc 4680 tgccatttcg tgtggtgacg gacgcgagca aggtcgggct gggtgcctgt cttatgcaag 4740 atcacgggaa tggatggaaa ccggtggctt acgcgagtaa agtcaatagt cctaccgagg 4800 ctaactacgg tatcacggag ctggagtgtt tggcggtcgt ctggtctgtc aagctgtttc 4860 ggccgtattt gtacggcagg acgtttacca tcgtaacgga tcatgcagcc ataaagttgc 4920 tgatgaccag ccccaacttg acgggtaaac tgcatcgttg ggcgttgacc cttcaggagt 4980 ttgagttcac ggtggagtat cggcctggca gtactaacgt gggggccgat gctctatcta 5040 gggcgccggc agtggttgca gcagcggtgg gacggcggcg gcggtctcga cagcgagcgg 5100 cgaatggcga ctcgggcggt acggcgagtg tagctgcggt gggaacgagg aatgcggcgg 5160 cgggcgttgt agttgacgca gtaagtgatg cgcgaacgga gacggatgca ggtgtgggct 5220 acgacgacga agtgagactg gcatcggaag tccgggcaga ccttggacgg gatggagcgg 5280 ttgaagcgca accagcgccc acggcggaag agagactaac ggcagtgaac gaggacggcg 5340 tggtaagcac gacgaacgac ggagcgttag cgagaggaag cgtggttgca gcgagcgagt 5400 gctcaggtgg cgggtctcga caaatggagt aggcgcgcag cactgataag tcgctgaggc 5460 tggagaaatc gcgcgatgaa atcaagtcgc gtcaactgga gaaggcgagc agtcctgatg 5520 gcggcgcgcc cgctgcagaa tcgacacggc cgtttacgcg agcggtcaaa cgacggctgg 5580 aagcagcaaa ggcgccggtg gtgacgactg ttgagcagca gcagtcgatg gaagaagcga 5640 cggtgcgctc ggatagtggc aaactacggg ggcaacggcg agtgcgattt gacctgcctg 5700 ggccagatgg cacggcgaag cgaccgcgta cgaccgcagt ggtgattgag cgtgagcgag 5760 acgatggtgg cagactggaa cccacggcgg taactgcacg gaggcgacca gcgagagcgg 5820 aggtgcgggc ggaaggcacg ggcaatcggt gtcggacgct cacggcagca cgatctacac 5880 aaaggttgga tgaggtggaa agaggcgacg cggatgagca gtgttaccca atacggggcc 5940 ccgatggtct tcaagagtcc caggtaatgg atggcgtgat gcgggtccca gtcagtgaag 6000 acgcacggga tcagctcgag cagcgacgac cgccaaccct acagttaaca gacgctgcgg 6060 tgattgcggc acagtcacgg agtcgcctgg tgcagagagt ggtcaaggcg cgcgagtatc 6120 gtggaatgac agtggaggtg cggcacaacc tggtatcgat caagacgcca cggggacgac 6180 gggtggtgct tccaccagag ctttggccgg tcgcttttaa ggtacatcac gactcagtgt 6240 gggcggggca tctacgagcc ccacacacgt acgagaggat agcggcgcac aattggtggc 6300 cggacctgca gcgtgaggtg aaactttggg tgcgaggctg tcaggcatgc ggtagcagga 6360 aagccaagcc acgcgaggta attccaccct tgcgcagtat tcgaggtggg gacgtaggtg 6420 accggtgggc cttagacgtc gctggaccct taccagtggt cggtggcgga cagagatacg 6480 ttatcgctgc cgtcgagtac gtcactcgtt acgcggtggc aaagactgtc aagcggcaca 6540 cggcggagaa cgtggcgagg ttcttaatgg aggaagtggt gcttaaattt ggcgtgtttc 6600 gcgagctatt gacggatggt gctccggaac taacagggct ggtaattgag aaatttgttg 6660 tgatgctgca agccgagcag attaatccag taccttatcg gccccagctg atcgggctgg 6720 ttgagcggtt tcaccgcacg tggaaggatt gcgtggccac atacatgcaa tcggacgcac 6780 aaaacgactg ggctacgtgg gtgtctttcg ctgtatacgc ctacaactcc ggaaggcact 6840 caacggtggc gctttcgcct aatgagctta tgatgggtag aagattgcgg agtccaaacg 6900 agttgctaag tgtgagcgga gtgacggagg cgggagagtt gtcggattac caccgacagt 6960 tagtggcagc aatgaaaaag agttacgagg tggctgagag cgcgcgggcg cgagagtagc 7020 tccggcaagc gcactactac aatcggaagg cgaggaatcg gcgcgagttt caaccaggtg 7080 atcgggtgtg gctgtatcgg ccgccacgcg gagctaaggc gagtaaattt gtccatcaat 7140 cgatggggcc aatgaagatt atcgagcccg cgggttttga gaactttttg gtcgaacgag 7200 aagatcacaa cggcgtgcca gagcgattta tagctcacgt gtcgtttctg atcacctact 7260 actatccggc ggacttactg aagcgcgcgg cggcggatat tacaggcagt tgatgtatga 7320 agatccgggc gagcccggtg aagatgtccc gccagaaagc acgactgctg gagcagcgac 7380 ggtgtctgtg caggcagcag cgggagcaag aatggcaaaa cgtaaggcga gaactgtggg 7440 ccgtgacgaa gcctggcgag tcacgagtgg cgcaatggtg gagattcgaa gacgacgacg 7500 tcgaaacaag gctcgatgtt acgtcctcga gtacgaattg cggcccgtgc gacgcgacga 7560 gtgtgctgcg ggagctcccg agagtgtatg ggtctccagt gcagtctacg acgagttgtt 7620 tgcggccgac agagtcgtgg aagactctga gttggaggaa gacg 7664 // ID Copia-47_PIT-I repbase; DNA; PLN; 4229 BP. XX AC AATU01004381; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-47_PIT_; KW Copia-47_PIT-LTR; Copia-47_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4229 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004381; Positions 269525 273753. XX CC Positions [1478-2023] - Integrase core CC 'CCAGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(5..2407,2411..4228) FT /product="Copia-47_PIT-I_1p" FT /translation="MMSSKSAASYTTKLKLFNGTGFPAWGAQVKLVLEIKG FT LWDAIQLPMPTEQDLKVEKDPAAAGSESSSASGTPSAAAASVAAVAQVKEA FT VGETTTPFHDLMIRQKMASSIILAALDEKIAAEVYLLDHPMAILRHLRMTY FT NVKCSASVGAAKREYIGLYLDGDNSMIDHIKNTRRVIDELQEQRVVLSDEE FT KRQNFMQSLGPAWNGFVGVLESCATFELMIQRCQAEAIRRDQQKNRRSTAG FT SGSGKGAAAFSAEQTAGKQKAGKPKKKRDMSRVKCYKCGKMGHFARDCKTD FT ESPSKAEAASVAFTVDDATDDNKRGWIVDSGATSHMTGHFDNLINVRELTE FT PRVLTVASGDNLVATAVGQAPLEKDGREVCVLQEVLFVKGLARNLISVAAA FT SRRGMTVEFKGASCIIRSPSGVSVLASREGQAMYVVDATSVAVEQAAMMTA FT ETPHLETWHKRLGHLNSRSVHQLLEDLKVPWHGTVNQSCPTCVSGKLAQKP FT FAVKGRRVLKNNQMLLAIDYVGPMQVTAREGYTGLANIVVEPFHLEMAYPL FT REKSSRAQLDAVKDCIAKLKAYAPEYRVAFIKSDNAAEYVGGEFAAYCSKF FT EIVQEFSTPYSPQQNGKVERSNRVIVEMARTLMQGANLPNAYWADAVVCAA FT YIRNRCPTKVLDGKTPMEAFLGSPPDISNLRVFGCKVQVLVPKENRKKLDS FT KTRNGIFVGYATGGAYLVHIPDRGTGETITARTVVFYEDQFLPPRDEEEVK FT IYTQLDLAQQELVNRMEGQLRLEDVEEEKEDVVMRSTANRSIDSEATETPQ FT PPSGPEPVGVVRQQARLRGDPRVEKAIPLPRRSSRIPKPSQRRLNYEESHL FT SLEQVCNMVEERLAPAQEDGTSISDGFIYRQLTPSDLTNWALGVEPINLDE FT VNASEDRNEWEQAMDDEVQSLVDNGTFVEAQLPSGRSAIKSKWVFKKKTNA FT DGSLDKYKARLVAKGFSQHAGEDYSETFSPVIRHSTLRLVLVIVVIKRMKR FT LQLDVKTAFLNSNLDEEIYLEPAEGYRRCKGCVWRLLKALYGLKQASRSWY FT EHLCAFLNAQGFRQGQADYCLFVKGAAEDLVIVLIYVDDILIFAMRDEDIV FT SFKAAMEAAFEVNHFEDVNFFLGLELTWSPSGDAVCVGQRKYSHTILERFG FT MEKTRSAATPMEERYRDKLFLDEDICEFKPRPAIGALLYLSVISRPDLATA FT IRLLAQETERPTRAVEDGINRVFRYLNGTRDFGLEFKQRDESGLVVYCDAA FT FSVERESHSSTGFAIFYCGNLVEWGSKKQSMVTLSSTEAEYIAMGTGVQEC FT IGLNMVLKDLRMEAAEILVFEDNQGAQHLAESKAVTQRSRHINTKYHWLRQ FT KVKEHEIRIQYCPTSEMVADHFTKPLGTIKFKYFRDELGVRRVG" XX SQ Sequence 4229 BP; 1067 A; 973 C; 1250 G; 939 T; 0 other; ggttatgatg tcctcaaaat cggccgcgtc ctacacgact aagctgaagc tgttcaacgg 60 gactgggttc ccagcgtggg gcgcccaggt taagctggta ctggagatca aggggctgtg 120 ggatgcaatc cagctaccca tgcccacgga gcaagatctg aaggtcgaga aggatccagc 180 agcggctggg tcggaatcgt catcggcgtc cgggacgcca tcggctgcgg cagcatcagt 240 ggctgctgtg gcacaagtga aggaagcagt gggagaaaca acaactccgt tccacgacct 300 catgatcagg caaaagatgg cctcatcaat catcctcgcg gcgctcgatg aaaagattgc 360 cgcagaagtg tacctgctgg accatccgat ggcaattttg agacaccttc gcatgacgta 420 caacgtcaaa tgcagtgcta gcgttggagc tgccaagcgc gagtatatcg ggctgtacct 480 ggacggtgac aattcgatga tcgaccacat caagaacacg aggcgtgtga tcgacgagct 540 gcaggagcaa cgtgtggttc tgtctgatga agagaaaagg cagaatttta tgcagagtct 600 gggacctgct tggaatggct tcgttggcgt gctcgagtct tgcgcgacat tcgagctcat 660 gatccagcgt tgccaggctg aagcgatccg tcgtgatcag caaaagaatc gacgctcgac 720 ggctggatcg ggcagtggta aaggtgctgc tgcgttcagt gcagaacaaa cggctggcaa 780 gcagaaggcg ggcaagccga agaagaaacg tgacatgagc agggtgaagt gctacaagtg 840 tggcaagatg ggacacttcg ctcgagactg caagactgat gaatcaccgt cgaaggcgga 900 agctgccagt gtcgcattca ctgtggacga cgcgaccgat gacaacaaga gagggtggat 960 cgtggacagc ggagccacga gccacatgac ggggcacttt gacaatctca tcaatgtgcg 1020 tgagttgacg gaacctcgtg tactgacggt agcatccggc gacaacttgg tggcgactgc 1080 ggttggtcaa gcaccgctgg aaaaggacgg acgagaagtc tgtgtcctgc aggaagtact 1140 gttcgtcaag ggactggcac gcaacctgat ttcagtagct gctgcatcac gtcgcggtat 1200 gacggtggag ttcaagggcg cgtcgtgtat cattcgctcg ccatctggag tgtcagttct 1260 ggcgtcgcga gagggtcaag caatgtatgt ggtggatgcc actagtgtag ctgttgagca 1320 ggcggcgatg atgacggccg aaacgccgca tcttgaaacc tggcacaagc gacttggaca 1380 tctcaattct cgcagcgttc accaactgct tgaggacctg aaagtgccat ggcacggaac 1440 cgtgaatcaa tcgtgtccga cctgtgtgag tgggaaactc gcgcagaaac catttgcggt 1500 taagggaagg cgcgtgctga aaaacaacca aatgctgttg gccatcgact acgtaggtcc 1560 gatgcaggtc acagctcggg aaggatatac tggtttggcc aatatcgttg tggagccctt 1620 tcacttggaa atggcgtacc cgctgcgaga gaagagctct cgtgctcagc tggatgcagt 1680 caaggactgt attgcaaagt tgaaggccta tgcgccggag tatcgtgtgg cgttcattaa 1740 gtccgataac gctgcagagt acgtgggtgg cgagtttgct gcgtactgca gcaagttcga 1800 gattgtgcag gaattctcga caccctacag tccccaacag aacggaaagg tggagcgtag 1860 caatcgcgtc atagtagaga tggctcgtac gctgatgcag ggagcaaatc tacccaatgc 1920 ctactgggct gatgcagtcg tgtgtgcggc gtacatcagg aaccgctgcc cgactaaggt 1980 actagacggt aaaaccccga tggaagcttt tcttggctcg ccgcccgaca tcagcaatct 2040 gcgtgtgttt ggatgcaagg tgcaggtttt ggtgccgaag gagaacagga agaagctgga 2100 ctcgaagact cggaatggga tttttgttgg ctacgctacc ggtggcgctt atctcgtgca 2160 cattccggat cgtggcactg gagagactat aacagcgcgc acagtcgtct tctacgagga 2220 tcagttctta ccaccaagag atgaagaaga agttaaaatc tacacgcagc tcgatctagc 2280 tcagcaagag ttagttaatc gcatggaggg tcaacttcgg ttggaggatg ttgaagagga 2340 gaaggaagac gtggtcatga gatctactgc caatcggtca attgactctg aagcaacgga 2400 aactccttga caacccccgt ctggtccgga accagtggga gttgtgcgac agcaagctcg 2460 tcttcgagga gatccccgtg tggaaaaagc aattcctctt ccgcgtcgct cgagcagaat 2520 cccgaagccc agtcagcgac gtctgaatta tgaggaaagt catctttcac tggaacaagt 2580 gtgcaatatg gtagaggaac gactggcgcc tgcacaggaa gatggtacaa gcatttccga 2640 tggctttata tatcgtcaac tgaccccgag tgacctaact aactgggcac taggtgtgga 2700 acccattaac ttggatgaag taaatgcttc ggaggatcgg aacgagtggg agcaggcaat 2760 ggacgacgaa gtccagagtc ttgtggacaa tggaacattc gtggaggccc agctaccatc 2820 cggtcgatca gcgataaagt cgaagtgggt gtttaagaag aaaaccaacg ctgacggaag 2880 tctggacaaa tacaaggcgc gtcttgtggc aaaaggtttc agccagcacg ccggtgaaga 2940 ttacagtgaa acgttcagtc ctgtgatacg acatagcaca cttcgactcg tgttggtcat 3000 tgtggtaatc aagcgcatga agagattgca gctggacgtg aagaccgcct tcttgaactc 3060 caatctggac gaggagatct acctggaacc agccgaagga tatcgcaggt gcaaaggctg 3120 tgtatggcgc ttgctgaagg ctctgtatgg gctaaaacaa gcctctaggt cgtggtacga 3180 acacttgtgc gcttttctga atgcgcaggg ttttcgtcaa ggccaggcgg attactgtct 3240 attcgtgaaa ggcgctgcgg aagacttggt gattgttctc atctacgttg atgacatctt 3300 gattttcgcc atgcgagacg aagacattgt atctttcaag gcagcaatgg aggctgcgtt 3360 cgaggtgaac catttcgagg atgttaattt tttcttgggc ctcgagctga cctggtcacc 3420 cagtggtgac gcagtttgtg ttggccagcg aaaatattct cacacaattc tggagcgatt 3480 tggtatggag aagacaagat ctgcagctac accaatggaa gagcgatacc gagataagct 3540 cttcctcgac gaggatattt gtgaattcaa gcctcgacct gccatcggtg cactgctgta 3600 tttgtcggtc atcagtagac cagacttggc tactgcgatt cgcctacttg ctcaagagac 3660 cgagcgacct acacgtgctg tggaagacgg gattaaccgt gtgttccgat atctcaacgg 3720 tacgcgtgat tttggactgg aattcaagca acgtgatgaa agcggacttg tcgtgtattg 3780 tgatgctgct ttttcggtgg aacgtgagtc gcattcgtct actggctttg ccatattcta 3840 ttgtggcaac ctcgtggagt ggggctcgaa gaaacaatca atggtgacgc tgtcctccac 3900 agaagcggag tatattgcaa tggggacagg cgttcaggag tgtatcgggc tcaacatggt 3960 gctgaaggat ttgaggatgg aagctgccga gattcttgtg ttcgaagaca accaaggtgc 4020 tcaacatctc gctgaaagca aagcagtaac tcagcgatcg cgtcatatca acactaagta 4080 tcactggttg cgacaaaagg ttaaggagca tgaaatccgc atccagtact gccccacatc 4140 agaaatggtt gccgaccatt ttaccaagcc tcttgggacc atcaagttca agtattttcg 4200 cgatgaactc ggagttcgcc gagtgggag 4229 // ID TSE5_I repbase; DNA; PLN; 4546 BP. XX AC AJ439554; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE5_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TSE5_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-4546 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439554; Positions 371 4916. XX SQ Sequence 4546 BP; 1269 A; 1018 C; 823 G; 1436 T; 0 other; ggttatgagc cctgtagccc aaagggaaaa tcctttgtcc attaaactgg agagctccaa 60 agactttaag aaatggttaa atcgtttaag aaatcatatg tttcatgtat ccaatgattt 120 ggctgcttat gcagaaactg gtaacttgtc tcaagcatct aatgaatata atttgtctga 180 acaagtcaga agtgaagcta ttaacatttt aagctttgca ttaattgaat tattgaaaat 240 atcaactcaa ggtcgtcctc atgacgctat tttcaaggaa acggatgaaa atccatacgt 300 tactggtaaa gaaattttag acatgattat taagaagtat gatatttcta attttcgtca 360 agatgtccaa atttggttac caatccattc tggtatggtt gctgagcatg tcgttcaaat 420 ggataattct tccgatcgga acctaacctt ttgtgctact gacacatcca cttctggtat 480 ttccaaagac gaatggattc tagacagtgg ttgtactgtt catgtttctc acaacaggga 540 attgtttact tcatttaaaa gttctaccaa ttccacactt agaggtgttg gtggtgagac 600 ccatatttat ggctatggtg atattaaaat tggcaacgtt acattaaaag acgtagccta 660 cgctccagac ttaccgttca atttattgtc tgtccaaaag gcaattacca cctcagatta 720 tgcgttatta ttcgatgttg atcaccatgt gaagattctt gatcaaaagg gttacatcag 780 agcattagca tctctgaaaa ataatttgta tgtcgtccac tttggtactg atactaagca 840 tatcgctatg ggtgcttatg atgttgaaat tacatcatct ttgactggtt ctcatgatcc 900 tttgttagct tctgaaaaac cagttactcc agaaactagc attttacatg ctcgactagg 960 ccatccaggt attaatagtt ataatcagtt agcatccatt gttcatgctc caaagattaa 1020 gccggcatca gttactgtct gtccaacttg ctcattatca aagggtacaa ttaataaagg 1080 tgtaatctca ccagctgagt acactagccc tttgcaacta cttcaagttg atttatgtgg 1140 tcctttcagg tataaaaact acaaatctga aaaatacttc atgacaatta gagatgcata 1200 ctccagatat tactcggtag ttcacctagt taaaaaatcc gatgctgccc aagaactgat 1260 tgattggatt caagaggttg agaattattt tttctcacgt ggtggttata aggtcggtgc 1320 tatccgtaca gataatggtg gtgaatttat gggtcaaagt cttcatgaat tttttaagaa 1380 gaagggtatt caacatcagt tgactgttcc tcactcaagt ttccaaaacg gagcagtcga 1440 acgtgctcat cgatcaattg aagagaagac tcgttgttta ctggtcggtg gtcgtgttcc 1500 tccatcattg tggacagaag ctgtcaatac tgctgtatat ttattgaata gattacctat 1560 taccaataaa aaaggctcta ttccgttttg cttatggaca ggttctgaac cgtctgctct 1620 aaagcttgat aaccttcgtg tctttggctg tgctgcgtat gctaccttag actcttccct 1680 tcgtgatggt aaatttgcac caacttctat ttcaggtgta tttgtcgggt atgattccaa 1740 ccgtaaggca tatcgtatct ttcacccagc gtctaagaaa atctttgcaa gttgtcaagt 1800 caagtttgat gaatttgttt ttccacttga acataccaaa gatacagtta gtacccactc 1860 ttttgctacc tcaactattg gcggtgcgcc aacatatcct tcatccaact ccggctatcg 1920 ttacattgaa tctgaaaacg aagtttcaga ttctagtcat ggcgatcaat catcatctgt 1980 taattcttcg ttctccgaat ccaataatat tgctcctgat gatgctgact atgaagagga 2040 acctgattta tccatgcgtt catcatctca ttcttctgat gccgctacct cgaaccttca 2100 agttgttcct attaccgctg caccaccgtc atctcctgac tctactgaac tagccaaaac 2160 ctccaacgca gctgtgcgtt cctccgactc ctattctagc tttccatcct ctgagcctta 2220 ttattctgct ccaccttcta atcaatcaac tgcctccatt tccgaatctc acctagtcag 2280 ccattccgat attccttctt gtgaatcgga gaatcatgat atggtgcttg ccgaccccct 2340 cgtggattct gtaacacaac aactccaaca cagtactaat caacttaaat cgactcacga 2400 tgatcttatg agtcttcaga aaatgaattc tgaactaact gcacaaaatt caagattacg 2460 taaccatgcc caccatctgg ctcagttagt tcctagtcct accgctcgta ataaacgtac 2520 tcatgctagt accgatttgt taccaccaat tgtcccaaat gaaattcttg tcgattcccg 2580 tccgaccaaa cagagcagta cccatgttct cggtactgat aaaattgcac gtcttccaac 2640 tgcaatggtt actccagatg accacaccta tcagacaatt cctattcaat ctactgatgt 2700 tgctcctatt aatcatgttc ctgttaaatc ggcatgggca gaccgcatcc gtcattatga 2760 atccaaacaa aactggtctc cgaccggtca ttctttgaca aaccttccaa ttgcagccgt 2820 cgatcaacta tatagcacag accgggctat tgttgttcgt aatgatcaaa accaactcac 2880 acagcatgtt ctttctccgg ataatgcttc tttaccctct tcagacattg atatcgaaga 2940 agtcgaaact cacgttggta tgactgctgt tattagtggc cactctacta ttactccatc 3000 actgatcgca ccaatgacta tgcaacaagc tctacgaggt aaaaatgcca aagcttggcg 3060 cagtgccgct gaacatgaac tggcagcctt taaaaaccat catacatacg aactcattcc 3120 acctcctgat gatgttcgtg ttcttggatc tcgttgggtt ctgaccgtaa aaggtacaca 3180 cacggctaag gctcgtcttg ttgctcaggg tcatagacaa attcagggtt tggattacac 3240 tgagacattt gctcccgttg ttcgttatga ctctgttcgt atcttcttag ccttagctgc 3300 ctgccatcgt cttcaggtcc atcaaatgga tgttgatact gcctttttaa attctccaat 3360 ggacgaacct gtatacgttc gtcaaccacc agcttttctt gatgctcaac accccgattg 3420 ggtgtggaaa ctttctggtg ctatgtatgg tttgaagcaa gctcctatgt tatggaataa 3480 acacatgaac ggcactttgt gtaaaaaggg ttttgaacaa catgctggcg aacacggctt 3540 gtatttcaaa aatactgctt ctggtattgt cattgttgct ctttacgttg atgatctact 3600 tattgcgggt cccaatgatg ctactatttc ttctgttaaa catgacttat ccactgtgta 3660 ctccatgaaa gatcttggtc cagtaagcaa gtttttgggt ctgaatgttc atcaaacccc 3720 cgctcatatc tcattaagtt tggaggatta cattgtgaaa gctgccaatg ctagttctat 3780 ctgtctcagc aaaccgagat atattcccat ctcccctacc acagatttgt ttgacactaa 3840 ctcttcactc ttgtcaaata ttaccccata tcaaagtatt gttggtcaac tactatttgc 3900 tgccaatact ggccgtcctg atattgcaca tgccgtctct ttgctttctc gttttcttaa 3960 ggctcccact gaacttcatc ttgagactgc tcaacgtgtt cttcaatatc tttatactac 4020 ccgtcatgct tctttgatgt atcaaatggg tgctcctgtt caaatgaata tttattctga 4080 tgcatcttat ggtgcaaagg aggatatccc atatgctaca cgggggtata tcacacaact 4140 agccgggggt actattacat ggtgctccaa gaaaattaag tccactatca cgttgtcctc 4200 aactgaagct gagtatatcg cagcaagtga ggctgttgcc gaaatgcaat ggttaattaa 4260 catgatgaat catatgggta ttaaagtgaa gacgccaaac ttatgggtcg ataacatccc 4320 tgcaattcat attgctgaaa acccggttca ccacaataga atgaaacatg tcgctatcaa 4380 ggttcaccat gtgagaaaag ctattgccga tggtcaaata aatattggcc atattaatac 4440 caaagagcaa ttagctgata ttaccacaaa aacattatcc aaagcgctat tcattcatct 4500 acgtgataag attatcttta aagcaagtat ttgacttacg ggggta 4546 // ID Gypsy-11_ES-I repbase; DNA; PLN; 5629 BP. XX AC CABU01001806; XX DT 08-FEB-2011 (Rel. 16.02, Created) DT 08-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_ES_; KW Gypsy-11_ES-LTR; Gypsy-11_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-5629 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01001806; Positions 9694 15322. XX CC Positions [1348-1833] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 313..2811 FT /product="Gypsy-11_ES-I_1p" FT /translation="MSPAASLANRYVHVLSSLPERGPLISSRTRAKTTAAS FT GGTVTGPTYFGRQPRATIVLRASSTARRPSRSRSTNKTIRTGTRPLPSPAT FT PTSAFSSTASAPPVPSPASARAASSVLPSIQVSPGTSPLPMPPPRVTPLSA FT TSPVVEAPRSTASSVGSLDSGLEPTDLDPSHLRACVQSFGTVDWAREQQRE FT SECVVAMRFLSRGSPSPPPSDLLTLSAPLRSPRLDDVLALAAKTRLHTTDD FT NVTLLVHKSAPSPIGRSGGRITRLPDTGVPRVYVPMLMRPWVLHACHTAAS FT FHLGVHRTQRLLERFYWWIGLDRSVRWWLRACLVCQARKTSRQTARWPVIA FT MPLPQGPGTVVGVDFFGPLPVTAKGNSYILLFTDRFSRRADMFAVTAAEFT FT AKGTAHIFVNQYMTKWGCPTTLLSDNGLHFCSKLSMAIYEVMKIKKVTTSS FT YHPQTNGGTERVNHTMAQMLAVVVNEQQNDWDVHLPHVEFAYNNSVNQSTG FT LAPNEIHIGRIPRLPLSVFDHPTVGGHQSLARDQLEYCNLAVDRQRRAYDL FT VREYNALKISRVERRNSSLLDAIHKLPQFTVGGWAWVYNTAATIRQGVRKD FT TDQQVLKAKFALSWTGPYKVLAVGPASADATPDGSPLARKLLYLDLPSDLS FT GPAARCRVSVLRCKPCRNPYETDDLPQSLPAELSRYVLHSFGDKCPPFHVT FT ADDVSVPVGRLEVDYISGHQLVRGRSGVLAVLYQTHWLGLTTPSWERESDL FT DQFRRHILLYWSREVCQSKQGNRSYRVARTRAAQRELARNRGERYLPPGAD FT LVLHATWLRRFSISPLPVGARLWYKARDGLW" XX SQ Sequence 5629 BP; 1032 A; 1622 C; 1424 G; 1551 T; 0 other; gggtatgatg tcgatcacgc tggtgtcttc ctcattcggg cttgtggact caactatcac 60 tcgtcgtcta cgccggaggt cagtttgggt gggctccgcc ctccctgctt ggcgggagtc 120 ttttcacccc cagcgctaca gccatccgat tttggggatt ttcgccgtca tcacccgcgc 180 cggctggatg tttgatcgaa ctcaccgatt gattatcaag attttcggag gtcttcggga 240 gtcttcgtgg tctcacatgt ttctgcgtct ccggtgcctg tttcatcttt ggctccggct 300 acgtcccgcg gaatgtctcc ggccgcgtct ctggcgaata gatatgtgca cgtcctgtct 360 tcgcttccgg agcggggacc gctcatttct tcacgaactc gggccaagac caccgctgct 420 tctggaggca ccgtcaccgg tcccacctat ttcggacgcc agccgcgggc caccatcgtc 480 cttcgggcat cgtccactgc ccgtcgtcct agcaggtccc gctcgacaaa caagaccatc 540 cggaccggca cgcgtcccct gccgtcacct gcgacgccga cgtcggcgtt ttcgtcgact 600 gcctctgcgc caccggtgcc ttcgccggca tcggcgcgcg ctgcatcctc ggttttgccc 660 tctatccagg tttcgcctgg gacttcgccc ctcccgatgc ctcctcctag ggtgacaccg 720 ctgtctgcaa cttcaccagt cgttgaggct cctcgttcta cagcctcttc cgtgggatcg 780 cttgactctg ggttggagcc gactgacttg gacccctcac atttgcgagc ttgcgttcag 840 agcttcggca ctgtggactg ggctagggaa caacagcggg agagcgaatg cgtggtggct 900 atgcgttttc tgtctcgtgg ctctccctcc ccaccccctt ctgacttgct cacccttagt 960 gccccgctcc gctcccctcg gttagacgat gtccttgcgt tggcggcgaa aaccaggctg 1020 cacacgaccg atgataacgt caccctcctc gtacataaat cggcgccatc gccgatcggg 1080 cgctctggcg gccggatcac tcgtctaccg gatactggtg tgccccgtgt ctacgtgccc 1140 atgctgatgc gtccgtgggt ccttcatgcc tgccataccg ccgcgtcctt ccatctcggt 1200 gttcatcgta cacaacgtct gcttgagcgt ttctactggt ggattggtct ggatcgttcc 1260 gtgcgttggt ggcttcgagc gtgtttggtg tgtcaagctc gcaagacttc gcgtcaaacc 1320 gctcggtggc ccgtcatcgc tatgccatta ccacaggggc ctggtacggt cgtcggcgtc 1380 gacttcttcg gacccctgcc cgtgactgcc aagggcaact cctacatttt gttgttcaca 1440 gaccgtttca gccggagagc cgacatgttc gcggttacag cggcggaatt tacggcgaaa 1500 gggacggctc acatcttcgt caaccagtac atgaccaagt ggggatgtcc gactacgtta 1560 ttgtcggaca acggactgca tttctgctcg aagctctcca tggcgatcta cgaggtgatg 1620 aaaatcaaga aagtcaccac cagctcctac cacccgcaaa ccaacggcgg cacggaacgc 1680 gtcaatcaca cgatggctca gatgcttgcg gtagtcgtca acgaacagca aaacgattgg 1740 gacgtacatc tcccgcacgt cgaatttgcc tacaacaatt ccgtgaacca gtcgactgga 1800 ttggcgccga acgagatcca tatcggacgc attccgcggc ttccgctttc ggtcttcgat 1860 catccaacgg taggtggtca tcaaagctta gcccgtgacc aactcgagta ctgcaacttg 1920 gctgtcgatc gtcagcgccg ggcctacgac ctggtccgtg agtacaacgc cctgaagatc 1980 tcgcgagtcg aacgccgtaa ttcatccctg ctggacgcca tccacaagct cccgcaattt 2040 actgttggcg ggtgggcttg ggtctacaac acggctgcta caattcgaca gggtgtgcgg 2100 aaggatacgg atcaacaggt gctcaaggcc aaattcgcgc tttcctggac ggggccttac 2160 aaagttcttg cggtgggtcc cgcttcggcc gacgccaccc cagatggaag cccgttggcg 2220 cgtaaactcc tctacctgga cctgccttct gatctgtccg gcccagcagc tcgatgtcgc 2280 gtatctgtcc ttcgttgtaa gccctgtcgc aatccgtacg agacggacga cctgccccaa 2340 tctctacccg ctgagctttc gcgttatgtc ctgcactctt tcggcgataa atgtccaccg 2400 tttcacgtca ccgcagatga tgtgtcggtg cctgtcgggc gcctcgaggt cgactacatt 2460 tcgggacacc aattggtgcg gggccgtagc ggcgttctcg ctgtcctgta ccagacgcat 2520 tggctaggcc tgactactcc ttcttgggaa cgggagtccg acctcgatca attccgtcga 2580 cacatcctct tgtactggtc tcgagaggtc tgccaaagca agcagggtaa ccgctcgtat 2640 cgagtggctc ggacacgcgc ggcacaacgg gagctagccc ggaatcgtgg cgaacgctat 2700 ttgcctcctg gggctgacct tgttcttcac gcgacttggc tccgtcgttt cagcatttcg 2760 ccccttccag tgggagcgcg gctgtggtac aaggcccgcg acggattatg gtgaacggga 2820 cgtattggtg ctcatcagga cggctcgtac atcgttcgat ttatggatga cccgggcccc 2880 agcgttctcc ctctgcctgc gcacctctac tccaccgcct tggacgccgt ctgtggatcg 2940 tggtatttag aaaaacatcg ctcgcgccct ttggccggga tcgcactcct cccattactg 3000 actccttacc gtcggctgtt cccaatatct cttcatagcg tcgccgtttt aggttcgagt 3060 tggtctatct tggattttgt ttgtttgttt gttcgtttgt ttgtttgttt tctttttgtt 3120 tttgttttct ccgtgtggtt tgcctctgaa cacttggaaa cagagttccc caagtttcgt 3180 cggtgttctt tgcctctgaa cacttggaaa aagagttccc caagtttcgt cggtgttgtt 3240 tgcctctgaa cacttcaaca acgagttccc caagtttcgt cggtatgttc gcctctgacc 3300 acgcaaacac cgagtttctc gtgtttccct tggttcgcct ttcgccaact catttttttt 3360 ttagctccac cgtgtcgccg catcctaggc ctgttacttc gggcttccat cccgtggcgt 3420 cgtcttctcc cgtggacatt cgtcgccatc cacacttcgt tccacttcgt ctccgtcatc 3480 gctacctgca ggcgacgcct tcatcatcgt cgagcccttg agtcgttgtg ttgttgtgtg 3540 tatctctgcg acttttctgt gttgtttgag tcttcctgtg ttgtgcgttg ccagcgagcc 3600 agggcaagtt cgtcagatcg cttctcagac gttgatcatt catgctttgc attcttggtt 3660 ttctttaggt cttgccgtgg ccgcctctct atacggtgtg agttctctga cacgctggaa 3720 attgttgtca gtgtgttcgc ctgtcattca tttctcctgc ccttctttga cgctttccta 3780 gattggttgc gttgatatct tcccctttac gtcgcgtcca gtatcaaagg ccgtactcgt 3840 tcggaaattt gcttgggttt tgagttttgt tgccgtattt tggggctctc tcgggtagtc 3900 gccctcattc ctcccattgt tatacgcgcg ggtgcgcgta aaagagtggt gtgtggcgtt 3960 taggttttga ctttatttct cttgccgtcg tctgttgcgg atagcgtgct gtgcagcact 4020 acatattttt cttggcctta tcccttcatt gataggagcg ttgtcattga gatgtcgatg 4080 tgttgtctcg tggccgttcg catccatctt tcgtctcaat gatggtgtgg gggttgattc 4140 gggatgtttc aacaactcac cctccttttt ggatgttttg tgaagagtca tatcttcgat 4200 tcatgagcat caatcgtcag ctaaaatctt cgttgtagct tttaggagtt gagcattgat 4260 ttgagtatag aatctgcata tatgatattc agggtgggct agtgttaagg agtgtggctg 4320 ctagcttaaa tagggtacat cttactgttg ataggatgtg ggtcggtccc aggaggtata 4380 cccttcagac accttccctc ttaggatttg tctagtctgc gtaccccctg aggtgaagtt 4440 ggatccccac ttcacctcag acccttgctt gctgatcgtc tctcagcaac aacaagcaac 4500 tttctcatct ctacgtgatc gtggacaagc gtgtcaacga cagaacctac cttcatctat 4560 ctctaggagc aagctaccgc ccacggcttc ccctccttta aactccagaa tcggtacacc 4620 ttcgcagagg cctgagacgc aagagttcaa ccatatggtg ccctctaaaa gcaagacgtt 4680 ttttttgggt gcatcagttc gcggtccgtc gccttgagaa ttttttttcg ccggctgttg 4740 cccgctgcag cgggccagtc tctggatcac agcgcccccg tcgcgagctc gaaactccga 4800 aggcgagtag agttacagca cgcacggtga atgcacgcaa ccactattta tttcagtaat 4860 tgagctagac gttgcggtgt gtgcggtaaa tcggttttat tttagtcgtt tttaaatggg 4920 gtttaaacat atttttcggc cgtcttcgcc gacgtgggtt tgccactctc acgatcacag 4980 cgcccctgtc gcgagctcta gactccaagg gcgagccgag ttacagcacc gtgaagtacg 5040 actaaatcgc ctgcacccgg gcgcgtctac ggtagggact gtcacctcaa agaatcacga 5100 agctcattgg acgagatttg ggagaacctc aactcataaa ccatgaccga ccaccacgca 5160 cgttgttttt ttatttttct taatatcaca caacgaaacc atctctatca tagaaaagag 5220 tctgagacag attagcaatg gattcatagc gtcagaaagt acctgtatgt ctacgatttc 5280 ccagacagca taccttaacc ctaaccacgc acgttgttgt aacatgtagc accgacggcg 5340 gattttgtta taattgtgcc gcgtggacat ttgggagaac gtcaactcat aaaccatgac 5400 cgaccaccac gcacgttgtt gttgttacgt gtagcaccga cggcggattt tttgtaattg 5460 tgccgcgcgg cgtcaactag atatcgacag actgctgctg tcgttactac cttctctagc 5520 gcaagcaaaa cgctaactga agtaattacg aagtcctcac gtgcatcgtg tatcttcacg 5580 tacgtgcaca cggcaataat aacgtatgta tgcctgaaat acacacaca 5629 // ID TFO1_FO repbase; DNA; PLN; 2763 BP. XX AC AB008746; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Fusarium oxysporum Ac-type DNA transposon TFO1_FO. XX KW hAT; DNA transposon; Transposable Element; TFO1_FO; hAT family; KW target site duplications. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-2763 RA Okuda M., Ikeda K., Namiki F., Nishi K. and Tsuge T.; RT "Tfo1: an Ac-like transposon from the plant pathogenic fungus RT Fusarium oxysporum."; RL Mol. Gen. Genet 258(6), 599-607 (1998). XX DR Genbank; AB008746; Positions 3549 6311. XX CC 15bp terminal inverted repeats. 8bp target site duplications. XX SQ Sequence 2763 BP; 742 A; 709 C; 672 G; 640 T; 0 other; cagtgtgtcc atcaatcaag ttacttggct tggttggttg tgattggttg attacgtaac 60 aaccaaccaa agtaagggct cctgttcaac caagcaaagc aacctttttc ctttactcgg 120 ctctacttga tttactcgac agaattgccg aatgaggcat agcgcgatga ctttgacata 180 tctacgcgct ctgattggct aggtattccg catcccacct gcgaaaattc tcgccgagtt 240 tcttaagaga aggtacctga cgattgcgcc aagctcgaag ccaaatatgt ctgcacattc 300 attctttcgg ccgcatagaa ggatcaggaa gtccactcca cctaggactc cctctgagcc 360 tctcggttct accctgccca gtacgcctac ctccgtgtca actccaaccg atatactggt 420 acttgatgac ggcgcatcta caccaaccat tgccgacgaa agacagattc caacgagctc 480 tcaatgtgtt ttccctatta actgggacaa gattcgctat gacgggaagc ctgtcccatc 540 aattcgatac cgtcagcctc ataagcgcac cctcaactcc aagctccaac cgtcagcaat 600 ctacaaacat ggtgctcagc tcacaaccga tggggataac aagtactggc tctgcaagta 660 ctgccatata cggggacacc accatactgc actattttcc agtgagagca ctaccagcgt 720 aatataccac ctaaagcatc aacataaact ggaagacttc ggataccagg cagcactgtc 780 aaaccccttc agcatggcga aggggacaac caaccccaca tcatatctcg gaggccggcg 840 gttagtgttt aacgacttgc aattcaagga cgactttatc gactgggtta tcgacctcga 900 tctcaccttc cgtcaagtaa cccatcaacg cactcatgag atctttacca accatctgga 960 agacattggc aagattctgc caaagagccc atccgccctc agtaactgga tcaaggagaa 1020 atgggtcggt gatgctggaa ggcgtgtttg gctgatggaa aagctacacg ttgctacaag 1080 caagatccat atctcggtgg atgcctggac atctgaagaa ggaacgaact atctagcagt 1140 tgttgctcac ttcttggacg aaagccataa gctgcaaaca gctcttctgg acctcccacc 1200 tctgaaagga ccccactccg gtgagaatct tgcgaaggcg ttatccaaag tcattgactt 1260 ttacgatatc tccaccgtca ttggcttctt catgatggac aacgctggca ataatgacac 1320 atgcattcag gagctggcaa agcaataccc ggcgatcaaa ccgcagagtc gccttcggtg 1380 tgttggtcat atgttgaatc tcatcgtcaa agctctgctc tttgggcagg gtgttagcaa 1440 gatggaacaa cagctgcgtg gcgcatccga cgaggagcga tttgagatat ggaggaaaca 1500 gagctttatc ggaaagctcc acaacttctg tgtgtgggtc aacaggagtg accagcgacg 1560 ggagctgctg aaacagtacg tgttgacggc gtacgacgaa ggcagcatcg agtgcctcta 1620 cactagagtc ctggttgatg gcggcatccg ctggaactct gcatatgcga tgattgaaag 1680 agctcttaaa ctccgccacg ccattgatct cttcttcctc aactacaacc atatcggcaa 1740 ggaatatgat atctcacagg atatgcttac tccgcaggat tgggttgatc tggaacactt 1800 cctcggtatc ttaaagccgt tcaaagatct aacaaaacgc atggaaggcc gggcaaataa 1860 agcgggcctt gaaggatccc acggctccct ttacgaaacg atcgagtcgc tagacgttct 1920 cttcaaggag cttcaagagg ctggaaagtt tgcagataat caccccgagg tggtgtccac 1980 atactattcc tatgctatcg atgctgctcg cgtcaagctt gaagagtact ttggccttac 2040 agatgccacg cctgcatacc gctgtgcggt tgccctgcac cctgcgaaca aatttacata 2100 cttcgagctg gaatggagtc acaacaagca gtggatcagt gaggcgaaga gagtggtacg 2160 ggaggtgtac gcacagtacg aggaagcagc tgccaaaacg ggcacgatag gagcacaacc 2220 acaggaggag gtaattgatg acaatgacgt ggcgctggat cctctccagc aggcccgtaa 2280 gcgtcgtcag cgacttgctg ccactgcggc gtcaggctca cgaggaaata agcgcatcaa 2340 actcacctct gagctcgatg agtttatggc cagggctaat agggctgatg tggaagttga 2400 ggatcctctg gagtggtggg tttgccatgc gtctgactac cctatcctct ctaagatggc 2460 ctttgacttg ttcagttgcc cagcaatgag cgctgagtgt gagcgagtat tctcacagac 2520 aaagaaggtc attaccgatg aacggaatcg cctcaagtca gataccgtag cggcacttga 2580 gtgccaaaag cacctgcttc ggaccggcat gttaccatag aaattgcccg attgggaata 2640 gtagtcaagt aatatcaacc aagtaaggac ttcttgtaag caaccaagta aagtaaaggg 2700 ctctagtcaa ccaagccgag taagggggtc aaattttggt ttacttggtt gatggacaca 2760 ctg 2763 // ID Gypsy-13_PSo-I repbase; DNA; PLN; 12743 BP. XX AC AAQY01000310; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PSo_; KW Gypsy-13_PSo-LTR; Gypsy-13_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12743 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000310; Positions 76980 89722. XX CC Positions [8642-8995] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 480..2672 FT /product="Gypsy-13_PSo-I_2p" FT /translation="MPPGLEGERDQEGTMPLLDSEETASILETPRGRKMFQ FT IFLAQLAQRPALSEVPVRESTGETTGAARQAPPTATSTSRPSEVTTAVTTE FT PSSAPARGVPSGDSTGVWMTSSTLERPRIPTSTTEQKGMFASRAGPGVSPP FT AVVAATTAPTRMPGTHPRMVTTPPLAPNVPEVGVSSPSGDQELQAFLNEAM FT LQALQVYAAQRNKTTMAAAPPLVMESVPSVPLPSTYAPQRPSLPTSMSMGP FT TSPESLTTPADMPMAAIHSYGGVSIQTPSTNGGGAGGGTLPPGVFYPPFQP FT PVVTTAGWGAPAGAFPAWASTNTTSVPMAPGLTFQGTVPAGGVAFQGQSWN FT QVPQSDVSPPQGGGYGIQATAGNPQRSFPVVGIPTELRNAVKVIVPFHSDS FT ATCERAAAFWRSFEKCTVGINAQMRLTAFEQCLKGKVGQEWWYNSKTDGFE FT ALRVWFHNRFICQTPAQLWNRLKTAKQNKGKSAEEWGDRIPTMYEALNYNE FT PRMQFEFFLDGLRNKQMKAMLNSSMVTSIPEACALLLYKNLHLPVEEEDEF FT PETKTGLSGTMADTSTQSLMLQQLRQMNQLMLQQQQASSTSPQGHINVVAP FT ARAQTTGTTAPQRSGTGSPPLGTLRIRLGPDTRTTEGTIVCGRCERRGCSR FT ETCPRATGHFSRCNELGHYSMECNIPKPQANNRYAERRPPECLLCGERGHM FT IAKCPEIETLRGLVKTGVVAGTPATATQSQQ" FT CDS 3644..5287 FT /product="Gypsy-13_PSo-I_1p" FT /translation="MMEVMEPARADVRAEGVSPAIELQFICNVCIGLDGAA FT WLTASETDEQALELSWRSKVRNGVYKLLKREVVTHSGLLAERLENPEGSQP FT QGEVPPKPETLNANPLDEDSIRVYLAERGAPSEAFLSKAIGWAKAYHAQEV FT PANRNKLYRRMRAHQEEKHVVVAPRPSTERDTVAFVRATKPLGGGNTDDAS FT KLSEEEPDIYVVNVKKMSKPKRRLGLREAGSTDVPEDKERLVPEGKRVICS FT VGGIQALSQGLIDCCPAEMLADTGAIASLVDKRILRRIGRASESLRPYHGS FT LDSVSGHEIRIKGVIDLPVTLGTLEKTLPFAVADRLPMEVIMGTDSLRAFR FT AVIDLDEQTMTLKETGDVIPLGVTRVEETYAAAVASTVRLEPGHQALLRTS FT VCGAVHNDTVVLVEGVPGSDASLRVDRTLCSVKKDQVLVEVCKASPDAIEV FT EKGALIANVTIVPASAFTNDGAAKRDRNISVVLSSTRGRDRRVDGAEAAEM FT AEAFNSGEVEELEVDFHGTSLGSEQRRIFPDMLRGFRDLFVETSKGPDELI FT Y" XX SQ Sequence 12743 BP; 3067 A; 3107 C; 3867 G; 2702 T; 0 other; agctacttta ctcttctctt agtcttttct tgagttcatc tattctccca acctcggcct 60 agcaaggaca cgaccccgac gaaggagaat cgtgacagtt tggtggagaa gcagggtact 120 tcgccaaggt tggaaggaat tgagacgtgg gaaagaagag agggccgtcg gagcgaacga 180 ccaagcggaa cttggccacg gaacgccaag gaagtgaaag aggtgtgggg cacactatga 240 gctccccttg atccggcgat ggacagggcg gggagtcagg ggaagagcaa agcggatggg 300 ctgctccctc gactgcggag ccgcaagtac cagccgagac ccacgaagaa gagagagagg 360 cgacggaacg cgctgcaagt gcgggggccg aaggaagcac ttccacaggg gagagtctac 420 cagagaatgc ggtccaagga gcgacacgca ggcttgacct cgcaggaaga ggagatgaga 480 tgccgcctgg actcgaggga gagagagacc aagaggggac tatgccacta cttgactcgg 540 aagaaactgc gtcgatcttg gagacgcccc gggggcggaa gatgtttcag attttcttgg 600 ctcaacttgc gcagcgacct gcactgagcg aggtgccagt acgggaaagc acgggtgaga 660 ctaccggagc ggctagacaa gcccccccaa cggcgacgtc gacatcgaga ccaagcgagg 720 taaccacagc ggttacgact gagccttcaa gcgcgccggc gagaggcgtt ccttcgggag 780 attcgactgg agtgtggatg acttcgtcga cactggaacg cccacgtata ccgacgtcga 840 cgacggagca gaagggaatg ttcgcctcga gggcagggcc tggggtctca cctcccgctg 900 tggttgccgc aacgactgct ccaacaagga tgccgggaac gcacccgagg atggtgacta 960 cgccaccctt agctccaaac gtgcctgaag tgggggtgag ctcgccctca ggtgaccagg 1020 aactacaagc gttcctgaac gaagccatgc tccaagcgct gcaggtgtac gctgcgcaac 1080 gaaacaaaac aactatggct gcagctcctc ctctggtgat ggaatcagtg ccatcagtgc 1140 ctctaccctc gacgtacgct ccgcaacgac cttcattacc cacctccatg agtatgggtc 1200 cgacgtcccc tgagtccctg accactcctg cggatatgcc tatggcggcg atacattcgt 1260 acggaggggt atcaattcag acgccgagta cgaatggagg cggggcgggt ggtgggacgc 1320 tcccacctgg tgtgttctat cctccgttcc aaccgccggt cgtgaccacg gccgggtggg 1380 gtgcgcccgc gggagcgttt ccggcttggg cgtcgacgaa tacaacctcg gtgcctatgg 1440 ctcctggact gacatttcaa ggcacggtcc cggcgggtgg agtggcgttc caaggacagt 1500 cgtggaacca agtcccccaa agtgatgtga gccctcctca aggcggtggc tacggaatac 1560 aagcgactgc tggtaaccct caaaggagct tccccgttgt aggtatccct accgagctga 1620 gaaacgcagt gaaagtcatt gttccgttcc actcggatag cgccacgtgt gagcgagcgg 1680 cagcgttttg gagatctttc gagaagtgta cggtgggaat aaatgcccag atgaggctga 1740 ctgcgttcga acagtgcctg aagggtaagg ttgggcagga gtggtggtat aactcgaaga 1800 ccgacggctt tgaagctctt agagtgtggt ttcacaaccg attcatctgc cagactcctg 1860 ctcaattgtg gaatcggctc aagacagcca agcaaaacaa gggcaaatct gccgaagagt 1920 ggggagatcg cattccgact atgtatgagg ctttgaacta caacgagcca cggatgcagt 1980 ttgagttctt tttggatggt cttcggaaca agcagatgaa ggcgatgctc aattctagta 2040 tggttacgtc gattccggag gcttgtgcct tgttactgta caagaatctg cacctgcctg 2100 tcgaggagga agacgagttc ccggagacta aaaccggact atcaggaaca atggccgaca 2160 cgtcgactca gtcgttgatg ttgcaacagc ttcgccagat gaaccagctg atgctgcaac 2220 aacaacaggc ctcaagtacg tctcctcaag gacacattaa tgtggtagct ccggcgcgag 2280 cccaaacgac gggaacaact gcgcctcaga ggtccggaac cggatcccct ccacttggaa 2340 cgcttcgtat tcgtctagga ccggacacgc gtacgacgga agggacaatt gtatgcggcc 2400 gctgcgagcg tagaggttgc agtcgcgaaa cttgccctcg cgctacggga cacttcagtc 2460 ggtgcaatga gttggggcac tactctatgg agtgcaacat accaaagcca caagccaaca 2520 atcgatacgc ggaacgccgc ccaccggagt gcctcctctg cggggagagg ggccacatga 2580 tcgccaagtg tcctgagatt gagacgctga ggggcttggt gaagaccggt gtcgtggctg 2640 gaacgccggc aaccgctacg cagtcccaac aatgaagggg gcaagaggga ggggaaggaa 2700 gtttcgctcc ttcctcttgc ctggatgacg acacacaggg gcgtgaatgc tctccgacga 2760 atgatatcat cggtgagagc gaggtggacc ccggactggg agaagaaaag agagaaggtg 2820 ctcgaagctt tccagctcgg caccagacga cggaaattgt gggaaatact acggacagcg 2880 tggagataga ttctccagct gaacagaagg aacagaggat ggtcaaaaaa gaagaaaaag 2940 gagactccgg cgctacgatg gaggcctcgg agggagcagt ggggctgtcg gaggaaagag 3000 aacggtgatg ataagtggaa gtgacctcga tgaggacgcc agcgcggagt cgtgtaactc 3060 gttaaaggtc gaaggaacgc tgcagtctgg cgacgaggac gtggtttcgg cacggttggg 3120 atcggtcttc gtcgtgtcta aagcgctaag cacagaaggg tcaacgcttg gggatcgtga 3180 agtgacggac gagaagctaa gtactaatga agtggacttg gagagttatt cgggacgttt 3240 gttcaccgac gacgagttgg acagactcga aaagggtgat aatggggtga taatggaaga 3300 actggaagag tacgaaaagg agctagaaga acgcttgttt cctctggacg aggataggat 3360 tcagcaaagg atcgaacaag cagccgagga acggacgagt cccgctctcg cggaaatgag 3420 taaagagcta ggggttccgt tggaagtatt ggaacagacg aaagatgtgt tgtctccgga 3480 gcttgctaca ccggaatact gacttggatg gtacgcaaga acattggaga catcggagga 3540 ggcgaagcgt accaaccgga actttcgcga tcaaaacgtg acgtggtgcg gaactcacga 3600 agacaacgac ccagttggcg ccagccccag cggcccgcat agcatgatgg aggttatgga 3660 gcccgcgagg gcggacgtcc gagctgaggg ggtctccccg gcgatagagc tccagttcat 3720 ttgcaatgtg tgcattggcc tggatggagc cgcttggcta accgcgagtg agacagacga 3780 acaggcactc gagctcagct ggcgttccaa ggtccgtaac ggggtctaca agcttctaaa 3840 acgggaggtg gtaactcatt ccggtctcct cgcagagcga ctcgaaaacc ccgaaggttc 3900 ccaacctcaa ggggaagtgc cgccaaagcc agaaacgttg aacgcgaacc cgctagatga 3960 agactctata cgggtctacc tagcggaaag aggggcgcct agtgaggcgt tcctctcgaa 4020 agcgattggc tgggcaaaag cataccacgc ccaagaggtt ccggctaaca gaaacaagct 4080 atatcgccga atgagagcgc atcaggagga gaaacacgtg gtcgttgctc cgcgtccgtc 4140 gacggagagg gatacggtag cgttcgtccg cgctacgaag ccacttggag gaggtaatac 4200 cgacgacgcc tcgaagctgt ccgaagaaga accggacatc tatgtggtga acgttaagaa 4260 gatgtcaaaa cctaaacgcc gactgggact ccgggaagcc gggtcgaccg atgtccctga 4320 agataaggaa cgcctagtac ctgaaggaaa gcgtgtgatt tgcagtgtgg gtgggataca 4380 ggcattgtcc cagggcctaa ttgactgctg tcccgcggag atgctggccg acacaggcgc 4440 tattgcaagc ctggtcgata aacgcattct cagacgaata ggacgagctt ctgaatcgct 4500 gagaccctat cacggcagtc tggatagcgt gtcggggcac gagattcgta tcaagggggt 4560 aattgacctg ccggtaaccc taggaacctt ggaaaagacg cttccgttcg cggtagccga 4620 tcgattgcca atggaagtga taatgggaac ggactctctc agggcgttcc gagcggttat 4680 agacctggat gaacagacaa tgacactgaa ggagactggt gatgtgatac cactgggagt 4740 gactcgcgta gaagaaactt atgcagcggc agtggcttcc acagtgcgat tggaacctgg 4800 tcaccaagcg ttgttgcgga caagcgtgtg cggagccgtg cacaatgaca cggttgtctt 4860 ggtggaaggc gttccaggat cagatgcgtc tctacgcgtg gaccgaactc tatgttcggt 4920 gaaaaaggat caagtgttag tggaggtctg caaagcttcc cctgacgcta tagaagtcga 4980 gaagggagca cttattgcaa atgtgactat agttccggca tccgccttca caaacgacgg 5040 tgcggcgaag cgggatcgta acatcagtgt cgtcctcagt tcaacgagag ggagagaccg 5100 ccgcgtggac ggagcagagg ctgctgaaat ggctgaagcc ttcaatagtg gcgaagtgga 5160 agagttggag gtggactttc atggcacgtc tctcggatcg gaacaacgtc ggatttttcc 5220 tgatatgcta cggggcttcc gtgacttgtt cgtggagacg tcgaaaggcc cggacgaact 5280 gatctactga aattcagcat agacaccgga acgcatgcac cgatcaagca gcctccatac 5340 cgagtgtcga aagccgaagg ggatgtcatg gaatctgaaa tccacgagta cttggatctc 5400 ggcctgattc gtccttcatc tagttcgtgg gcgagtcctg tgctcatgat cagaaaaccc 5460 gatggaggaa tccggttttg tatcgattac aggaagctta acgctgccac cgtgaaggat 5520 tgctatccta tgcccctaat agacgatatc ctggatgtcc tggggaacgc caagctcttc 5580 tcaacgatgg atatagcttc ggggtactgg aatgttccga tggaccccga tagcagtgaa 5640 aagacggcgt tcacgagtaa gtttggtttc tatgagtggc tggtgatgcc tttcggccta 5700 tacaacgccg tacccgcgtt caagcgactt atggaaaatg ttctggtgga tctgaagtcg 5760 aggtcgtgcc tggtgtatct ggacgactgt gttgtgttca gcgaagattt tccaactcac 5820 ttgttgagag tcagacaggt gttggaacgc ttccgaagtg ctgggttcaa actaaaaatg 5880 aaaaagtgtc actgggggcg caaccaagta gctgtcttgg gtcacattgt gaccccttcg 5940 ggaattctgc ctagagaaag cgaaggcggt gatgaatatc gcgaagccgc acgatttaca 6000 cacgttgagg gctttcttgg ggctcacgag ttactttagg cgatacacac ccggcttcgc 6060 gacaattgca gcccccctgg aacgcctgaa gctgaaggga gtcgtgttcc gatgggatga 6120 agattgtgac agtgcgttcc ggcaactaca gcgagctcta gtgaaacctc ctatcttggt 6180 gtatccggac ttcaagaaac ggttcaagct ctatgtagac tcgtctcatt tggcggtcgg 6240 ggcgtccttg atgcaggagg tcaatgggcg agacagagcg atcgcgtatg ctagtaaaat 6300 gctgacaggt tctcaacgca actgggtgaa caaaaccagt gggacgacga agattgaatg 6360 ctgcggaatt gtgtgggcga ctcgtaagtt tagatgttac ctcgaccacg cggagtttga 6420 cctattcacg gatcatcaag cccctacttg gatctttggg gagaatactc ggacgtctaa 6480 tgctaagttg gcgaggtggg cgatggagct ctcgcaactt cggttcaagg tgtaccataa 6540 acctggcact acaatgggaa acttccaaaa atcgcctatt ctaatgtacc aaattgctcc 6600 catctgctga accatgtgtg tactaaactt ggactaacgg atgctcagac gcaaaagacg 6660 tctgatcaaa tgccgtcctt ggtactgacc aaagcctcca attagccttg acttcacagc 6720 ctgatcgaat acaaagatgc tgctctgtac gataaagccg cccccactcc gcaatttcct 6780 tgccaagacc gccgtacgac accagccatg acgaaggcag caaaaacgaa gacaaagggc 6840 aagaacttca ccaagtccga agtctcacgt gcgtgtacgc tagcattacg gagagatctg 6900 agtagacgac tcacaaatat gacgtgttgg tcacaggaat gctggatgtt gtggaagcta 6960 tccttccctt tggagctgag cagtggcaaa acgctgcgtc tcagttcaat acaaatattc 7020 cagcagggtg gactgagcga gatggcgaca gcctcaaacg taaattccaa aagctggttc 7080 gtgttcctaa accgacaggt acggcgtatt tgatgtgctg gcacttgtgt ggttttcaac 7140 tgacctattt cgatttattt gtaagggaac ggaacatgtc ccgaggaggt gcagcgcgcc 7200 aagcgtctac aatatgccat tgaggcttca ttgtctgttg ttcagctcca cgacaacttt 7260 tcggacgaag agttcgagga gggagatccc gaccacgaca ccgacgagga agctgcaagc 7320 tccgtgcttg tgactgctag ttcacctcta gcagcctcga cggactcaca attaacccaa 7380 acacccacgg caacttacaa cagaacacct cgagcaacat gtcgtaggta tggggaagga 7440 gagagacggt attgatgaac gacttctcgc accgcgactt gtacatgaac gtccatgcgc 7500 aaacggcgtt agaggttaga gcagcagtct ttatgtagtt gcgctcccgt atgagcatgc 7560 gcatccttat gaagcacatc agcttcttca gtagtgcgtg ttgcctcctt ctctgttgct 7620 gacgttggac ggaaagcgat gcgttgacac gagcaaggag gtgaccagtg tgcatggtga 7680 gggacggaca cgatacgggg acgcgagagc cgacgcgaag gctgagactt ctgaaatgaa 7740 ctcgggtttt tggtggcagt cggatgacca aatgagaact ataccggcgc caagtggtga 7800 actatatcgc tcttaaatct tggtttggta caacatatag gcgatttttg gaagcctccc 7860 aatgggccat gcagacggat tgtctagact atatcataag tcagcacctg ttgcgatcac 7920 tttggttcgg aagtctacga tcggtggcgt agtgggcgat aacataagtg aatccactag 7980 tacactagag ggagttacag ctacgacaat ggagggagaa gggggcgttc cagctgaagt 8040 cggggagcag cacaaggaaa ccggtaggga agtactctta cccggcctga atgagaacct 8100 cgcgggtgac gccccagccg aaccgctctc tcaagatgag caagaagaag acctacaagg 8160 aagagcactc tcttctaacc cttcgccggt ggatgagttt gggctggact gcgataagtt 8220 tatattggag caagatcgga ccccgtggat gcgcgccctg aaggcgttcc tacaagatag 8280 cgccttagcg ctcgactccc aactacgggt cagtgtactc aagatggccc ctcatttcgt 8340 agtgcggaac ggcgtgctga tgcgtagagt gcacttgggc gcacgcgctg gtccggcccg 8400 tactatcacc gttcctgccg ttccgttgcc ttttatcgaa acagtccttc actattgcca 8460 ctctgacgtc ttctctgctc atctgggaaa gactaagact gccgacaaag taaggcggca 8520 cgcttattga catggctgga aacaagatgt gatcgagtac gtgcgtgaat gttctatctg 8580 tggcggcggc aagggtcatt ggccctggag ggctgggctg acgcagagaa tgccggtaca 8640 gaacttgact ggaccatttt cgttgttggt ggtcgacgcc atcgggcctt tagtaaccac 8700 accccgggga aacaagtata tcttggtgtt cgttgcctat ttcacgcgat gggccgaagc 8760 gttcgtggtg gagttgcttg acaccatctc ttttgtgaac gcaatgatcg agggtgtcat 8820 ttgcaggcac ggcgtgcctg aacagctcct aagtgaccgt ggaacgaact ttatctcgaa 8880 tttggctaaa tcgctctacg aaacactggg aatcaagaaa ttgttcacca tccccagacg 8940 caaggcctgg tggagcgttt caatggaacg cttatcggta tgttgcggat gttcgtgaat 9000 gagactcaga cggactggga tatctacctg ccgagagtgt tgttcgcgta cagaactgcc 9060 tatcacgagg cattgccgtt ctttagctta tacgggcgag atccggttct ccccattgac 9120 gtagcgttct tgaacacgag taaacattgg aaaagcaatg aggtggctgt ctacagaagg 9180 aagttgtaca agtcgctcag ggattctagg cggttggtgg aacgccagct gatcaaggcg 9240 caggataggc acgagaagcg tatggccaaa caagagaagg tcgagtacga ggagggcggt 9300 cctgtgtggg tataccagta tttcagagcg aaacgaggag agaaacggac aaaaaactgg 9360 cattttcctg gcacggcccg tatcgggtta tacgcccagt cgggaagaac gcctaccgaa 9420 ttgctatacc cactcatccg aacaaggtag tcaccgttaa tgtgaaccgc ctgaaacgat 9480 tccggggcaa atggagcaga ccttatgcgg atgaaatacc agagggtgtt ggtgttggcg 9540 ctacggacga cggagtaggt cctttggagg aagaagattt accgtcgaca agtttcgcgg 9600 aacgcatctc gattggaggg gaagagactg caattacagg tgtaagctca ccgattgtgg 9660 acattgtggc taaaaaggtt gaatcgaggc aggtacaata catggctctg acggccacgt 9720 acgaggcaat ttggctcccc cgggctgcac tggtacctga atacgatgct ttaatcagag 9780 cgttcgagga ggcggatcga cgtaaaaagg gtctgccgga gctacgacgt agcgctaggg 9840 tggtggaagc caacgcagac gtggacgacg acgagatctt gttctagtct atggtctgtc 9900 ggatgcgaac caggtggaac ccgagggctg catgagaatg gtcattggac actgaggcac 9960 cgagggggtt gtttgtattt ttcctttatt gattagtgcg tatggcgatt aaggcgttcc 10020 actactggat atatctggac tacaatgagc atgggagaaa cggagcgcct caaacgattg 10080 ttgatgtgaa atggagtaac gctgaaccga gtgggcctaa ttgtcggagt ttatctcgcc 10140 gtcgacttcg tcttcttctt cgaagtcgga atagttgaca cgacgagact cagctagggt 10200 gattggcttg gaagtgggga cattgcttga gttggacccg ggctcaccaa ctagtttgtc 10260 ttggatcaac ttgattcggt tggagtttat cagggacttc catggttcct cagtcttggt 10320 gccgacccat gtatctttag gcttgcgccc ggacattatg tctcggcgga cgtaggccag 10380 cgctgtatcc gaaagtcgat atgggggaag agccgacaac tgcaaggcct cagtcgactc 10440 gaagaaagac cgcatgctgg tgtaaccgta ggagtcgatg gcgtcggggt caagggcgat 10500 attgagcatg gtgttgtatc gagcctagtc cctgcgggac aaggacgcga gatcgtccgc 10560 caaatggccg ttgtagctgg cggcgtcgtt ggaagttcga ccgggctgac gtcccagcca 10620 atatagctga gggtgttcgt ccagcttctc taagaaagca tagaaacccc aagtctcgat 10680 gcagaagctg gtgaagacca tacgagcttg ggtagcgcgc agtttgagtt tacgtcggtt 10740 agccaacgcg aggctggaat caagcggggc atggaacgcc cactcccaga acgcgcgacg 10800 atgcgccatc cagaagcgcc aatgatggcg gtgtacatga gggttcttga ctgggtcgta 10860 ccacagagca cgtcaggtcc atggatatgc aatacgccac ggcttcttgc cggcagcctc 10920 cgccttcgca agaacagcag cgatggcttc ccgcacatgc ttcggagctt tagcgctgcc 10980 ctcgacagtt ttgggagcaa gaggcgccga gtctacggcc accggaaggt cctctgtcgc 11040 tgttggcttg ctgggagtgc gtgatttctt ctgcggagtc ttccgagccg atgtgatact 11100 cgccgccttg tgtttggacg gagcaggggc tcccctggct gactttgacg acttagtgcc 11160 cgtaagcggg cttgcggact cggtcggcgc tgacgtagtc gccgatgcag ttgaaggaag 11220 gggcctcgcg tggggagcac gagccgagct tgcctgggga gccggaggcg tcggcagcgc 11280 caaccctgtc ccttgtagta ctgcggtcga cttgccgtcc agcacgtctt gggctaactg 11340 gtccaggtga tgcaacccgc ccgacatggg attgacgtca agacgggccc gcatctcatt 11400 ccagaactga gcctgcaagg cacggacgcc tcgcccgacc cctccttgag cctcgctgtc 11460 aagaacctcg tcgataaacg ctcggaagcg cctgagtttg gaggcagtca accgcgtgga 11520 catgctgctg aactagaggc gttcctatca gtggtggatt ggggaataaa gagagagctt 11580 tgccgctcca aggcactctg ctgttggcta ggaaccggcc gtatgactct gtgcgtctgg 11640 cgtcattgtg gttctggtct ctgacgtcat tcgtggagca gaactgcggg tacaggagtc 11700 agtccaagtt tatctggaga ggcgccaaat ggaggaccag cagagaggga acgctgtggc 11760 ggcggtactg aaggacttca agatgcagga ggtcactcct gttgcgtggg cggcgacggg 11820 cattatactc tggatcgtca ccactccgaa atgttacgtg ggtgttcctc gggagtgcgc 11880 gcgagtacgc tgggaccctc tacttttttc tctacacgtg tggtgatagg ttcatggagg 11940 cggcacgaag ctcacaagcg cttgcgctac ctccgtcgga gtacgcactg gccatgctgg 12000 ccctgttctt cctggtcccc aaggcagtct tgaacgacta cgaatcgcgg ttcggcccca 12060 ttgggcggct ttacgcaaag tggattgagg cgttctacca cacaacgtgt gtgttcgtgc 12120 cggatgctct ccaattatca tgggactcgt cgtgccttta tgctcgaggg attagtgaag 12180 catcggtggc agtgatggac aggactggtg acttcgcgtt cggagcttat gtgttcacga 12240 cgctgctact ctctgtggcg atttatttgc ccaaagtcgc gtacgacatt tgtgaaggcc 12300 tactattcgg atgggtaggt gtcgttgttg ctctactgct gctcgacgtc tatatggagt 12360 tcgacgcagc gtgttggtac gtgaacgggt tagttctttt ggtcggagca tacagccgtc 12420 ttctgcgtca ttatgagaga catcatcttg cagcagcaat gcagccaggt agcgtcgctg 12480 aacaagggtg gaagaatctc tggaaacgcg tgtgttcgcg cgaggaacga gagcgtgtca 12540 gcgtggagcg cctacgaggc ggccctgcac gcgaggagca ccgaaactcg acccgatcga 12600 attcaagtac agcttcaggt atagctggaa cgccacaacc taacgcatct tccgatggca 12660 ccgcgtctcc tggggatcga gccgtgcctg gggaacaagc agagaatgct cgacgagggc 12720 gtcgagacca agtcggggag att 12743 // ID Gypsy9-LTR_VC repbase; DNA; PLN; 323 BP. XX AC scaffold_44; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9-VC; KW Gypsy9-I_VC; Gypsy9-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-323 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 137-137 (2008). XX DR Genome; scaffold_44; Positions 973512 973190. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 323 BP; 82 A; 99 C; 76 G; 66 T; 0 other; tgttgtggta ccgcgtacga acgcgagtaa ccacgtccaa gaaggactcg gccaagacgg 60 ctatcagaaa ctaaccgatc gtgaacgatg aagggacttc ggcctgtccg agtttgacag 120 accaacggtt gataaccggt ccgcttgaca gcaatacagg gctgagccct atttaaggcg 180 gcttgaagcc gacctgaacc acgacctctc aactctggat ttcactacaa tcttcaccta 240 cacttagctg cccgtctact tcatcggcgc cagtcaacgt cgcctctacc ccgctggatc 300 cgccaagggt agataccact aca 323 // ID Copia-1-LTR_FCy repbase; DNA; PLN; 396 BP. XX AC . XX DT 21-JAN-2010 (Rel. 15.04, Created) DT 21-JAN-2010 (Rel. 15.04, Last updated, Version 1) XX DE Long terminal repeat of a Copia-1_FCy LTR retrotransposon - DE consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_FCy; KW Copia-1-I_FCy; Copia-1-LTR_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-396 RA Kapitonov V.V. and Jurka J.; RT "Families of self-primed copia LTR retrotransposons from diatom RT and fungus."; RL Repbase Reports 10(4), 553-553 (2010). XX DR [1] (Consensus) XX CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX SQ Sequence 396 BP; 126 A; 74 C; 68 G; 128 T; 0 other; tgttggggat tcaattatta atacgagtcc tgtgaggttt tcacaacagt cattatgtgt 60 cacgaacgtc gtgacatctg tgcatgttgt ttcctcacaa taaatatata tatgctgcgc 120 attatcgtgt ggttggcaat tgaagagaaa agatgtgttg tatttgcatt gcgttaatgt 180 aactcaatgt aagcacctcc atcggcacct cggattgcca tcaccaatgt tagtcattat 240 ttattataaa acttatgcaa taggtaaata ataataacaa gttaataagc tagccataca 300 tagtattcaa acctatatat cactctagta tcttcaagca ttacgtaata agcaacatac 360 caatacccac ggcgttgcga ttactgtatt tcaaca 396 // ID Gypsy-12_PR-I repbase; DNA; PLN; 5015 BP. XX AC AAQX01001388; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PR_; KW Gypsy-12_PR-LTR; Gypsy-12_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5015 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001388; Positions 55459 60473. XX CC Positions [3816-4301] - Integrase core CC 'CGCAC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1212..2654,2658..5012) FT /product="Gypsy-12_PR-I_1p" FT /translation="MRRVQATRLALDVPAETVEKTGARGEDDGTTVAHISD FT LPVPASLLDSGADDSLVSAGVVSKLAELGNFVAVKQCSTTPLYPVGGGTLE FT VSRKVRFEEVTLETPAGPLMLRGLVCWIDENDKSHALTISRLVMKRLGYST FT PKLLADAKVRSDEYHLDEMDLSEAADRKFTRMHAIMRNKTEEYFEADEVDD FT LVTTPSLIAEIDQQGVQAVSAAKVQEAREAGLPSDCVETLQQLLVRYCDIF FT RLAFGNDPPIKVPPLKIRLKQGARPVKAKARRYPPLHREYLEKHLNELLDH FT GLVYINHRSRWASAPRIVAKKQPGEYRMTVDTRAINVLTDPMLWPMTDLEA FT DLASAEGSEDYFTLDWWRGYWQLPLDEESQELFTIITHRGMVTPTRVLMGS FT SDSVAYCQGVVEQIFGPLLAQEILAWLDDILGFAKTPAALMKVLEHVLTLC FT EQYGLKLHPSKCCFYTREALWCGKLISADGVRHSPQVQGLVDLPPPRTAGD FT LQQFICAVNWMRSSIPNYSALMADLAALLEVAATKAKSRKKTHLHRVLLSG FT IGWGSQHDAALRGVKEALLRIVPLAHARADWEVTLYADASDEHWGSVVTQV FT PASDLGLPLEKQRHHPLAFLSGSFTGASRRWAIIDKEAFAILATCKRLSYL FT LLRPRGFHVYTDHRNLQYIFNPAGGNGDVSKFQADRLQRWAMTLTMFNYVI FT EHVSGEQNVWGDLLSRWGATSKTEEGPAATRMSSLTVVERVSPLQDADFQW FT PSRDEIVGEQERALRLLREDSDLLPPCHLDHEQGFYLDEDGKIWIPGEAVD FT LQQRLCVIAHAGSMGHRGVAATTQALKHVFTWGTLVADVQIFIRSCLHCMM FT IGEKTVPRPYGSALHATKPNELIHFDFLSMPESTDGLKYVLVIKDDMSGCV FT ELIECADPDSKTACRGLLDWFKRFGVVLQWISDRGAHFKNELITLLKKKLG FT GSHHFTTAYCPWANGSVEVVNRMLLRCLRALLSEMKLAMSDWTNVLPIVQS FT ALNQTPADRLGGVAPVTAFTALPATTPLTSILHPNIGTMEDMAAVVEKQRQ FT HITDIRDSLANMHRELSAEAAKKRQQARDRRASKAGVEMALFTEGDFVLAA FT HVLSRANKLAVQWKGPKRIVKALSDYVFEVQDLMAPFAISTHHASRLKFYA FT DASRNVTEELVAQAMHADGGHLVFKLVECRMGPETHTWEIQVEWVGLDPLE FT ASWEPATIIYEDVPELVKRFVLRADSDAAQAMWASLTKTPAAQQKSKPQRR FT RKGRG" XX SQ Sequence 5015 BP; 1213 A; 1269 C; 1430 G; 1103 T; 0 other; aagttaactt tctcaccgtc ggctagctca acaagatggt ggatgcggcg tcagacgaaa 60 aactgactat cgacgtgcca acgccgctgc cagacccgac gggcaacaca cgcggaacgc 120 taccagagag cgttgctgcg actgtgcgcc agggagcacg ccggtaccag tggaccgggc 180 catttacggt acccaatccg aggttcgctg ggttggggag tggatcagag gatgttgaga 240 tgcccacggc ctctcctggt ggcgagggat ctcaagctgg cgatggacaa gatgaagaat 300 cgggtgtcca gtacgtcatg agtaacgccc ctgcactccc cgccgcccca aagtacagtg 360 gcagtactct gcaggagaag cgcgagttca tgagggcgta tcagacgtac gtccacgccc 420 tgagcgcgtt ccatactgcg accacgaagc catacatcat gccggtgagc gcgtgtatcg 480 aggaacgcac gtgtaacctc atctgtatgt acgagctgaa caaagaccca agtggggtat 540 cagaagctga gtgggtcgcc tactttctcg aggctctaaa acctgagcaa gaggactata 600 cagctatcga cgaggcgatg aaaagcctga agctgaaaac gacgtttcca gatgcgaagt 660 cacgcatggg tcagctgcgt gctgacatgc acaagatcct ggatcaacat aatgtggaga 720 acatcttttc cagaaagagc agaagaagct ggttcagtac ctggtggctg ctttggagcc 780 tgaaaacttc cgagaggcaa ttcggaaacg cttgtcgctc gaccagcaca aggatatgag 840 gaaggacgtc gtgagttgct acaagtggat cctggaactg ctcatggcat atctgcagtg 900 gaatccgtcg ggctcaaagc ctaatcgggc tccagcccgc ccgcagaatg gacccgctac 960 aaccgctgca agtggtacca accgacgtca gactcctttc agcagaccac cacaggcggc 1020 aacgcattgg cgcaagtcag atataggaat tccgcccgcc gaacctccac agaaagggcc 1080 acgacctcct ggaatgccta aagtgtaagt caagcgaaca cagggtgcgc cagcgcccgc 1140 aggttcgtcc cgaggagatc gatgccctca tccatgcttg gaagacatca cgctctgctt 1200 cgaagactca catgcggcga gtgcaggcaa cgcgacttgc cctggatgtt ccggcggaga 1260 cagtggagaa gacgggagca cgtggcgagg acgacggaac cactgtagca cacatcagtg 1320 atttgccagt tccggcgtca ttgctggact cgggtgctga tgattcgctg gtaagtgcag 1380 gcgtcgtaag caaattagca gaacttggca attttgttgc tgtcaagcag tgtagcacaa 1440 cgcctctcta tcctgttggt ggtgggacgt tggaagtctc acgcaaggtt cgatttgagg 1500 aggtgacatt agagacacca gcagggcccc taatgctccg tggactcgtg tgctggattg 1560 atgagaatga caagtcacat gcgctaacta taagccgtct tgtaatgaag cgcttgggct 1620 attcgactcc gaagctcctg gctgacgcca aggttcgcag tgacgagtat catctggatg 1680 aaatggatct ttctgaggct gctgaccgca agttcacccg catgcatgct atcatgcgca 1740 acaaaacgga ggagtatttt gaagctgatg aagtcgacga cctcgtgaca acaccctcgc 1800 tgatagcgga aatagaccaa caaggcgtcc aggcagtgtc agcggccaag gtgcaagagg 1860 ctcgagaggc tggattaccc tcagactgcg tggagacgct tcagcaactt ctcgttcgct 1920 actgtgatat ttttcgtcta gcgtttggca atgatccgcc tatcaaggtg ccaccgctca 1980 agattaggct gaaacaagga gcacgaccag ttaaggcgaa agctcggcga tatccacctt 2040 tgcatcgtga atacttggag aaacacttga atgaactatt ggaccacggc ttggtgtaca 2100 tcaatcaccg tagccgttgg gcctcggcac ctcgcattgt tgccaaaaaa caacctgggg 2160 aatatcgcat gacagtcgac acgagagcca ttaacgtgct gacggacccg atgttgtggc 2220 caatgactga tctggaagct gatctagcaa gcgctgaggg ctccgaagac tacttcacgt 2280 tggactggtg gcgcggctat tggcaattgc cattggacga agaatcgcag gaactcttta 2340 ccatcattac gcatcggggt atggtgacac cgacgcgggt acttatgggc tcctcagact 2400 cggtcgcata ctgccagggt gtagtggagc agattttcgg tcctctactt gcccaggaaa 2460 ttctggcttg gcttgatgac atattgggtt ttgcaaagac ccccgcggca ctcatgaagg 2520 tgttggaaca cgtgctgacc ttgtgcgagc aatatggact caagttgcat ccatccaagt 2580 gctgctttta cacccgagag gcattgtggt gcgggaagtt gatttccgca gacggtgtgc 2640 gtcacagccc tcagtgagtc caaggtcttg tggatttgcc accacctcgc accgcaggcg 2700 atttacaaca atttatctgc gcggtgaatt ggatgagaag cagtatcccg aactattctg 2760 ctctcatggc tgatctcgca gccctgcttg aggttgctgc cactaaagcc aagagtcgga 2820 agaagacaca cctacaccgg gttttattgt ctggtatcgg ttggggatct cagcatgatg 2880 ctgctttgcg tggtgtgaag gaagcacttt tgcggattgt gcctctcgct catgccaggg 2940 cagattggga ggtgacgctg tatgctgacg cgtcggacga acattggggc tccgtagtta 3000 cccaagtccc agcttctgat cttggattgc ctttggagaa acaacgtcat catcctttgg 3060 cttttttaag tgggtcgttt actggagctt ctcggaggtg ggcaattatc gacaaggaag 3120 cctttgctat tctcgccacc tgtaagagac tatcctatct gctgcttcgg cctcgaggtt 3180 ttcatgtcta cacagaccat cgcaacctcc agtacatctt caacccggcc ggaggtaacg 3240 gtgacgtgag caagtttcaa gcagacagac tccagcggtg ggcgatgacc ctcaccatgt 3300 ttaactacgt gattgaacac gttagtggcg agcaaaacgt atggggggat ctgctatcac 3360 gttggggtgc tacgagcaag accgaagaag gaccagcagc gactcgcatg agctccttaa 3420 ccgtcgtcga acgagtgtcg ccactccaag atgcagattt ccagtggcca tcacgtgatg 3480 agattgtggg cgaacaagaa cgggccctga gacttctccg cgaagacagt gatctgttac 3540 cgccatgcca cctggaccac gaacaaggtt tttacctaga tgaggatggc aaaatatgga 3600 tcccgggtga agcggtggac ttacagcagc gcttgtgcgt catcgctcat gccggatcga 3660 tgggtcaccg tggcgttgca gctacgactc aagccttgaa gcatgtgttt acatggggaa 3720 cactcgttgc ggatgtgcaa atctttattc gaagctgctt gcactgcatg atgatcggtg 3780 aaaaaacggt gccgaggccg tacgggtcgg ccttgcatgc tacaaaaccc aacgagctca 3840 tccatttcga ttttttgtcg atgccagaga gtactgacgg gctcaagtat gttctcgtca 3900 tcaaggatga tatgagtggt tgcgtagagc tgatcgagtg tgcagacccg gattctaaaa 3960 ccgcgtgtcg aggactactt gactggttca agcgctttgg agtagtgtta cagtggatat 4020 cggacagagg cgcgcacttc aagaacgagt tgattacatt gctgaagaag aagctaggtg 4080 gctcgcatca tttcaccacg gcgtactgcc cctgggcaaa cggcagtgtc gaagtggtca 4140 accggatgct gctcaggtgc ctacgtgctt tgttgagcga gatgaagttg gccatgtcgg 4200 attggacgaa cgtactacca attgtccagt cagcgttgaa tcagacacca gctgatcgcc 4260 ttggtggtgt tgctcccgtc acagcattta cagcattacc ggcaacgact ccgttgactt 4320 ctattctgca ccccaatatc ggtacaatgg aggacatggc tgcggtcgtg gagaagcagc 4380 gccaacacat cacagacata cgtgattctt tggccaacat gcaccgtgag ctaagtgcag 4440 aagcagccaa gaaacgtcag caggcgcgcg accgcagagc cagtaaagcg ggtgttgaaa 4500 tggcactctt caccgaagga gatttcgtgt tggcagctca cgtattgtct cgtgcgaaca 4560 agctagcagt tcagtggaag gggcctaaac gaatcgtgaa agcactgagc gactacgttt 4620 tcgaagttca agatttgatg gctccatttg cgatttcaac ccaccacgcg tcaagactga 4680 agttctatgc ggacgcgtcc cgtaacgtta cggaggagct cgttgctcag gccatgcatg 4740 cggacggcgg acacttagtg ttcaagttgg tggagtgtcg aatggggcct gagacacaca 4800 cttgggagat ccaagtcgag tgggtcggcc tcgatccctt ggaagcgtca tgggagcctg 4860 ccacgattat ctacgaagac gtccccgaat tagtcaaacg ctttgtgttg cgtgctgact 4920 cggatgcagc tcaagcaatg tgggcatcgc tgaccaagac tccggcagcg cagcagaaat 4980 cgaagccaca acgccgccga aaagggaggg ggtag 5015 // ID Copia-6_ES-LTR repbase; DNA; PLN; 325 BP. XX AC CABU01007703; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_ES_; KW Copia-6_ES-I; Copia-6_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-325 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01007703; Positions 33441 33117. XX SQ Sequence 325 BP; 53 A; 106 C; 74 G; 92 T; 0 other; tgttagatat actcgcagca gtatctggtc gtgaggatcc cagggggata cgtgttggga 60 atttcgtgtg ttgcagggta ccatcggtgc ggtcacgggg acccttttgg cgtggttggt 120 gcgatgaagc ttgcgtgcgt gctgcgctca cttcttcctc tctctctcca ccaccaccac 180 cgtctctctc caatcaagtt tccttctccc actctctctc caactctctc tcaatctctc 240 tctctcggcc taacacggcc gactacccag tgccccaagt aacgtccaga acgtgcttgc 300 tgcaccccgc gtagtttacc tttca 325 // ID Sola3-1_PS repbase; DNA; PLN; 5773 BP. XX AC . XX DT 28-JAN-2009 (Rel. 14.02, Created) DT 28-JAN-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola3 DNA transposons from Phytophthora sojae. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW Sola3-1_PS. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5773 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 518..4648 FT /product="Sola3-1_PS_1p" FT /translation="THSLFLSLCNYQSKGVNVAIAIANAAKAGAEARARRA FT SQAQIQERRKNGPDHYSYLIADSIKAAALAGYKSRVQRAARANDFGANRTE FT RNAGGGGSFAAACTDSRKQSARENSDLFQADQDVQKGCSSEKAAKSSVDHM FT GGDVCDNLVADIKCYAGRPIDFAVVCSAGNAQSRKPQHQKDAACGARKEGK FT AEEWSSLQVSQQILRDMGNDTGSELCCVAYERGESDNTGLKWSRCDGSVIE FT HDLPHACSPRVERGKSVAIEPRIGVSTPVAIEAFVATAERKSQASRSLSFG FT MQTENADRDLLIDVAGNNEAESVPKSYGEVIHAAEIDATADNSCEQGQSYN FT NSSPFKSPRLRRSNRIQVERMFVSPPTLTPTPVRRTLPTIRALLKFFSLPE FT SEVKSFLKHLPSKKTRSTAEFWTDSDSSTTDAAYQRTVASNLVFRLLQCIS FT ETLCGTSASSAFLEIFATWLNPVTCANDTLVTTSANVLAKTRKGSLEYRSV FT RALLCGSYSLKSLQDICIDVNGVCIGRKAHLAGCRDFQILLDEGALEVSKV FT TRQRFDPAVVSEAVRYILSMENVSFLSWGTKTVKLDGERVSVPAIQRRKTV FT NVMFDQYGHQRTPGNMVSARTYYRLAAILTHGTSQPRKAVNYVTGFLINDN FT FQLLDRIVCDLLPETSTSVLERLDILREWLKYGGAQTFENGQRLEESHCPR FT HLIQFGLATPPVSTGDTTKPKKPKKKAPKHSRAKAAQSETKSSARTISEAA FT NGLNASSGATKTLSRAVSCQQCIAMDIIFADLRQQLEATNPDPTTLEVVDD FT AYEKMELYLGHRVRVTNQQRAIHETAELIRTKCMDERGSSDAIIVIDFKMK FT LEPIYFREKTVDHYGKRGMSWHGALVRYWTYDADASGSDGTRISENKVYVD FT QISNGDNKQDKESVVALVEGILIVGSRASVPIYQARDVSQSDNASCYQNTF FT LALMLPLVGASNNIEVVRFIHTETQDGKCVLDAHFATATRKVKAWVRQGHD FT ATTPQEVVTALTSDGGIPNCIAELVEYNRAKMKFVYEAVEPLAKSLGRLFT FT RFNEVVYDHPPFTPPSLWKERFDVKTWPSFKLTIFEYSGVGDGCIVCVCPT FT LGRCDCNTTHDRNRQKLDLRDDTLDSDIELGNFSSDSEDECEQFEPIGNDA FT EATSETSTVVALPGGSIGALSGIQITRFGQLRMRTSDMRCERPTLGNDPHG FT RDFSEKDVEAYAKRSLMDMQTGGDFSDIIESTGLGRKVIAAAKKCVKMTRE FT QKQLAPGWARRQKKGYMYGAKYIALYSEEVEKLFNRGVADASTKMGPARMR FT EFLTKAYPRRYNLPGENEIRSRISALLQKQKKSGKALPPRRPTNSKQFSQS FT QVNGSVATEGGDV*" XX SQ Sequence 5773 BP; 1591 A; 1286 C; 1497 G; 1397 T; 2 other; caggcgtcgc ctcgaacagg gaacattttt ccgtgcacat cataaattct tttttattaa 60 tatggctcgg atcgacctga aactttggca acaagctctg gttggtcatg gataggtaat 120 tagaaagttt gggaagaagt gtgcttgtgc tccaggtgca atgaacacaa gatcagcacg 180 ccatactgga atgtagtcag aggtttattg caagtttatc ataactgaac ggtcgccgct 240 gctttcagct ccctcatctg ggcatctgca caatggcgac cgataaagaa gaagatggtt 300 tgctgttagt gcgcaccaga aagcgcaagc agtctctagg gcaaggtgta atatgtaaca 360 aggaaatgag agcttgcagt ctgatgctgc tgcggctgca gctggatcaa agcgtctccg 420 aagctgcaat aaccccgact atccggtacg ctaaaagatc tcaatcacta atagcttact 480 gaattatact ttttgaggtc taaccttgag ctaatgaaca cactctttat ttctctctct 540 ttgtaattac cagagcaaag gcgtcaacgt ggcaattgca attgctaatg ccgccaaagc 600 tggtgcggaa gctcgtgcac ggcgagcatc ccaagcacag atccaggaac gccgcaaaaa 660 tggtccagat cactattctt acctgatagc ggattcaatc aaggctgctg cactcgctgg 720 ctacaaatcg cgcgttcaga gggctgcccg cgcgaatgat tttggcgcta accgcacgga 780 acgcaatgct gggggtggag gaagctttgc tgcagcatgt accgacagca ggaagcagtc 840 agcacgcgag aattcggacc tctttcaagc tgaccaagat gttcaaaagg ggtgctcgtc 900 ggagaaagcg gcgaagagca gcgtcgatca catgggagga gacgtgtgtg ataaccttgt 960 agcagacatc aaatgctatg caggacgtcc tatcgacttt gctgtggttt gtagtgctgg 1020 caatgcacaa tctcggaagc ctcagcacca gaaggatgct gcatgcggcg cacgaaaaga 1080 aggtaaagct gaagagtggt cttcgctgca ggtttcgcag cagattttac gggatatggg 1140 taatgatact ggtagtgagc tgtgttgtgt ggcgtatgaa cgtggggaat ccgataatac 1200 tggattgaag tggagtagat gtgatggctc ggtgatcgag cacgacctgc cacacgcatg 1260 cagcccccgt gtcgagcgtg gaaaatctgt cgcaatagag cctcgaattg gggttagtac 1320 tccagtagca attgaagcgt tcgtggcgac agcggaacgg aaatcacagg cgtcacgctc 1380 actaagcttt ggtatgcaga cggaaaatgc tgatagagac ttgcttatcg atgtcgctgg 1440 taataacgaa gccgagagtg tcccaaagtc gtacggcgag gtgatacatg ctgctgaaat 1500 cgatgccacc gctgataaca gttgcgagca aggtcaaagt tataataatt ccagcccctt 1560 caaatccccg cgtttgcgac gttcgaatcg gattcaagtc gaacgaatgt ttgtgagtcc 1620 gccgacatta acgccaaccc ctgtccgccg gacacttcca acaattcgag cactcctcaa 1680 gtttttttct cttcccgaaa gtgaagtgaa atcctttcta aagcatctac cgtcaaagaa 1740 aacaagatca acagcggaat tctggacgga ttcggactcc agcacgactg atgcagcata 1800 tcagcgcact gtggcgtcca atctcgtgtt tcgattactg caatgtattt cagaaacgtt 1860 gtgcggcacc agtgcatcta gtgcgttttt agagatcttt gcgacctggt taaacccggt 1920 gacttgtgct aacgatacat tggtgacgac gtctgcgaac gtattagcga aaacgcggaa 1980 gggctctctc gaataccgaa gtgtgcgcgc gctactgtgc ggttcatatt cgttgaagag 2040 cctccaagat atttgcatcg atgttaatgg agtttgcatt ggacggaaag ctcacttagc 2100 gggttgcaga gattttcaga tccttttgga tgaaggcgcg ttggaagtaa gtaaagtcac 2160 aagacaaagg ttcgacccag cagttgtgtc tgaagctgtc cgctacatac tctccatgga 2220 aaacgtttcc tttctgtcgt gggggacgaa aacggttaag ctggacgggg agcgggtatc 2280 tgttcctgcc atccagcggc gcaaaacggt aaatgtaatg ttcgaccagt atgggcacca 2340 acgaacccct ggaaatatgg tgtccgcacg aacatattat cgactagccg ccatcttgac 2400 gcatggtacg tcacagcctc ggaaggcagt aaattacgtc actgggtttc tgatcaacga 2460 taattttcaa ttactcgatc gtattgtttg tgatctgctt cccgaaacca gtacgagtgt 2520 gctcgaacga cttgatattt tgcgtgagtg gcttaaatat ggtggagcac aaacgttcga 2580 gaatggtcaa cgtttggaag agagtcactg tccccggcac ttaattcaat ttgggcttgc 2640 gacccctcct gtgtcgacgg gagacacgac caagccgaag aaacccaaga agaaggcacc 2700 taaacattcg cgtgcgaaag cagctcaatc tgaaacgaag tcgtcggcaa gaaccatctc 2760 agaggcggca aatgggctca acgcatcaag cggcgctact aaaacgttat cacgtgcagt 2820 gagttgccag cagtgtatcg ccatggacat catatttgct gacctccggc agcagttgga 2880 ggcaacaaat cccgatccaa cgacacttga agttgtggac gatgcttacg agaaaatgga 2940 gctctacttg ggtcacagag tacgggtcac aaaccagcag cgggcgattc acgaaactgc 3000 tgaactaata agaaccaagt gtatggatga aaggggcagt agtgatgcga tcattgtcat 3060 tgatttcaaa atgaaacttg agccaatcta tttccgcgaa aagactgttg atcactatgg 3120 gaaacgagga atgtcgtggc atggagccct agttcgttac tggacgtatg atgcagatgc 3180 cagtggttct gatgggactc gcatttcaga aaataaagtg tacgtcgatc aaatttcaaa 3240 cggggataac aaacaggata aagaatctgt ggtcgcacta gttgagggga tattgattgt 3300 cggttcacgc gcgagcgttc ccatttatca agcgcgtgac gtttcgcagt ccgataatgc 3360 ttcgtgttat caaaacacat ttctagcgct catgcttcct ctcgttggcg cttcgaacaa 3420 tatcgaggtc gttcggttya tccacactga gacccaagat gggaagtgcg tcctagatgc 3480 ccattttgca actgcaacgc gtaaagtgaa agcttgggtt cgtcaaggcc acgacgctac 3540 aaccccgcag gaagtggtaa cagctttaac gtctgatggc ggtattccga attgtatagc 3600 ggagttagtg gaatacaatc gcgccaagat gaagtttgtt tacgaagcgg tggagccgtt 3660 ggcgaagtcg ttaggccgac tttttactcg tttcaatgag gtcgtttacg accacccgcc 3720 wtttacgccc ccttcgctat ggaaagagcg ttttgacgtc aaaacgtggc catcgttcaa 3780 actcacgata tttgaatatt ctggtgttgg agatggatgc atagtgtgtg tgtgtccgac 3840 acttggtcgg tgcgactgca atacgactca tgaccgtaat cgccagaaat tggatcttcg 3900 tgatgacact ttggacagtg acatcgaatt aggtaatttt agtagtgaca gtgaagatga 3960 atgtgagcag tttgagccaa ttgggaatga tgcagaagcc acaagtgaaa cgtcaacagt 4020 tgtggcgctt cctggtggtt ctattggtgc tttatcagga atccaaatta ctcggtttgg 4080 tcaactacgg atgcggacga gcgatatgag atgtgagcgc cccacacttg gtaatgaccc 4140 acacggccgt gacttttctg aaaaagacgt cgaagcttat gcaaagcgga gtcttatgga 4200 catgcaaaca gggggggact ttagtgatat aattgagtca accggtctgg gcagaaaggt 4260 aatcgcagcg gcgaagaagt gcgtcaaaat gactcgagag cagaaacaat tagcgccagg 4320 atgggctcgc aggcagaaga aagggtacat gtacggtgca aaatatattg ctctgtacag 4380 tgaagaagtg gagaagctct tcaatcgcgg ggtggctgat gccagtacca agatgggacc 4440 ggccagaatg cgagaatttc ttacgaaagc gtatcctcga cgctacaatt tgccaggcga 4500 aaacgaaata cgctcaagaa tatcggccct tctacagaag cagaagaaat ctggcaaggc 4560 attgccacct aggagaccga cgaattccaa gcaattcagc caaagccagg tcaatggaag 4620 tgtagctacc gaaggtggag acgtctaact ggaaggcata agaagcaaca ctttatttag 4680 acccacaatc gtaaactcac tgccaatcaa tggctaaaca ataacagttt gaatgcaagt 4740 agcttggtct tcacaacctc agtataaaaa atatcacgat ctcgcaccaa caacggatta 4800 caaagtgcca aaatacagga catgcattcc aatggatctt gtcgggactt gtttaaccta 4860 gcgaaacgaa ttcgcgtcac atggacgatg gcaccccact tacattgaca actctatcta 4920 cgttttgagg aagacctttc cgatgcgact tctggaaaag cacgaggtaa atacaaacga 4980 atgagagatt cgtgtcaggc tgcgaatagc tctctagagt caccataatc tatcaaatcg 5040 aagctgctaa gcgcgctcac tctgctactg ccttcccgct ttcgtttcta atcgtttatc 5100 attgcttcaa tctataggag ggatacttgc aatagagtat ccgtccaata tctgcaacaa 5160 tatacgagaa gaaagccact agattacctt gcatacaagg taaaggtgta gatgcacggg 5220 cactagttga tattgtagct actgttgggt tgataatatt atcaacgtca ttttagagcg 5280 gttgctactc gctgtagaca ccagagaaag gggagaggaa gggagggagg gaggaaggaa 5340 ggaagggggg aagaagcgcc ttccatgaca ccaacggacc ctggtgatac gcgtgctctg 5400 tcagttgttg tgttttggta tgcctcaccg tagcatcatg tggatgaatt ataccgaggg 5460 tctgcgacca ataaagagct aagcactacg aggccagtca gtcatattta ccaccacaag 5520 acgtttctga tatcttaccg gatttaaata tattctgtaa tttacgacga agagtcgctc 5580 aactcgtcat ttcggagagc ataacgcgat aactacttcg cgtaagcgac tatgtcggct 5640 accattgtgc tcgtgagaac aagccctttg gattaatacc gctttcgagc tcattggggc 5700 cgttttccag ggcctcattt ttgagttgca cggaaaagtc tacttttagg ttcctgcacc 5760 gaggcgacgc ctg 5773 // ID Polinton-1_PI repbase; DNA; PLN; 18398 BP. XX AC AC163889; XX DT 14-MAR-2006 (Rel. 11.02, Created) DT 14-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE A family of autonomous Polinton DNA transposons - a fossilized DE genomic copy. XX KW Polinton; DNA transposon; Transposable Element; KW Interspersed repeat; Maverick; Tlr; Polinton-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-18398 RA Kapitonov V.V. and Jurka J.; RT "Self-synthesizing DNA transposons in eukaryotes."; RL Proc. Natl. Acad. Sci. USA 103(12), 4540-4545 (2006). XX DR [1] (Consensus) XX CC This transposon is characterized by 113-bp terminal inverted CC repeats and 6-bp target site duplication. It encodes a family B CC DNA polymerase (POLB-1_PI, ~pos. 2621-6591, the coding sequence CC is corrupted by stop-codons and frame shifts), retroviral CC integrase (INT-1_PI), ATpase (ATP-1_PI), cysteine protease CC (PRO-1_PI, ~pos. 15990-15613, corrupted by frame shifts) and one CC unclassified protein (PPI1-1_PI). Polinton-1_PI was identified in CC the AC147544 GenBank sequence (pos. 120925-98961). This CC transposon contains an insertion of piggyBac-1_PI transposon (at CC pos. 13570) This insertion and one TTAA target site were removed CC from the Polinton-1_PI sequence. XX FH Key Location/Qualifiers FT CDS 254..2098 FT /product="PPI1-1_PIp" FT /translation="MVKLVCAIVGVAGSAFPVDIDASQLVGDLKKAIKAEN FT AMTFTGDAKDLQLFLAKQPVDDESGKEVVPVYRPSAEEMKEENLKWLPDEH FT RAALKLVEGESDDYIHALTAGEPILGSKTLTTWFYTKNNMELPSSEQIHVL FT VVVPEQGSSVPTVSQDGVFDHCINPFFLQFRTVDKVGDWLEFSSLLPLTRR FT QKLYIRSSYQVIANHALFNPNVGMVKYAVVTGTPGVGKSVFVYYVLWRLIK FT EKKRVLLFDNNGLFYFDGSTMLICLALPSKFNEQFWSPDLWCLVDSMDPTS FT IPGLPYRLCSVLLASTPRRDCIGEFKKQPPTADVFYMPLWSKEELATIAPM FT YPHAAAVWENRFDCLGGVPRLVLQDIETDPQALLMSACSSCSLDDCIMLVS FT IYSEINSKTKIVQTLIHIHSQEPYRKYKVVYASDLAMQLIVRTKWRFDRAK FT LQSLLGSSDGNPLAQSLCGYIFEFYSMDRLEQGGTFVYRELFSGKRKRTPA FT DGTIDIPRSSQPRQVAERVEVGQHAKQLYVPGTSNYTAIDAWMPQFGGFQM FT TVGKTHDIKGGAADDLAKLGQNGNRLFFLLPPLYYKTFTKKTPQTIKQYAI FT LVPYPEVRNELSASTLQ" FT CDS 6673..7599 FT /product="INT-1_PIp" FT /translation="PKNGFIGAQALYQKAKELNPKITFKIVKDWYGSQPDI FT HRFQEQKKRFNGFKIASHNPNSWQIDLAFWKKRPILTAININSRLGYAKLL FT RKKTAAIVLEALKAFVRLHKVDILTSDNGSEFMNFQAQELFKSKTIEHYNN FT EPGDHGTMGKIERFNRTLKQRLTKMSPKRITQKLITDVIENYNTTFHRSIG FT MTPNEAKGKVMNADLSHNQVEADRIEKEFDVGSSVLYRLKKQTFDKEAARW FT SKAVYKIAGIDGYRVQIRSKMVIPSTRRQTILKYSTQRLQMLLLIVAIFLK FT LRRSWIIRRHGLGSTNI" FT CDS 13155..13568 FT /product="ATP-1_PIp" FT /translation="MNAIPDFGASIPNCFKSASMGDIPALDMKALFRMVVL FT GPSFSGKNNLCMFILKHSPHVFAHLTIIAHNPHQELYEYLREKLEGFITFA FT DPDSPPKVDQVRHTPLSSNKPELVIIDDYSNDKLLQKNIFSHYYTRGGHF" XX SQ Sequence 18398 BP; 5357 A; 3937 C; 4013 G; 5091 T; 0 other; agtagtacga catggaacat tacgctggca gtttttttac tttccgtaat ttacctgcga 60 gaccagtcct ggaacgttct ttcgaggcag ctgctatttt gacgacgcaa ccttgagaat 120 tagttcggac cagcgcgacg tggcgtctca tcattggttg aaaatcattg tcacgcgctt 180 tcttttccgc ttaagtacgc cagaaattct ccctccttct tcctcattcc agaacttgcc 240 gtctcgagaa aagatggtca agcttgtttg tgcgatcgtt ggtgtggctg gaagcgcttt 300 ccctgtggac atcgacgcga gccagctggt gggagacttg aagaaggcga tcaaggcgga 360 gaatgcaatg actttcacgg gcgacgccaa ggaccttcag ctcttcctgg cgaagcagcc 420 cgtcgatgat gagagcggca aagaggtcgt ccctgtttac cgcccttctg cggaggagat 480 gaaggaggaa aatcttaagt ggctcccaga cgaacatcgg gctgctctga agctggtgga 540 aggagaatct gatgactaca tccatgcgct gacggccgga gaaccgattc taggctcaaa 600 gaccttaaca acgtggtttt acacgaagaa caacatggag cttccatcca gtgagcaaat 660 tcacgtgctg gtggtggttc cggagcaagg gtcctcggtt ccaacagtct ctcaagacgg 720 tgtattcgac cactgcatta atccattctt cttacaattc cggacagttg acaaagttgg 780 tgattggctc gagttttcgt cgttgctgcc gctaacgaga cgtcagaagc tctacattcg 840 ctcttcgtac caagtgatcg ccaaccatgc gctgttcaat ccaaatgtgg gcatggtcaa 900 gtatgctgtc gtcacgggca cgcctggggt tggaaagtcg gtgttcgtct actatgtcct 960 gtggagattg atcaaggaga agaagcgcgt gctccttttc gacaacaatg ggctctttta 1020 cttcgatgga tcgacgatgc tgatctgtct ggcgttgcca agcaagttta atgaacagtt 1080 ttggtcgcct gatctgtggt gccttgttga ctcgatggac ccaacaagta tccctgggct 1140 tccctaccgg ctatgctcag ttcttctcgc aagcacaccg cgacgagact gcatcggtga 1200 gttcaagaag cagcctccta ctgccgatgt tttctacatg ccactgtggt cgaaagaaga 1260 actggcgaca attgctccca tgtatccaca tgcagcagct gtgtgggaga atcgatttga 1320 ttgcttgggt ggtgtacctc gcctagtgtt gcaagacatt gaaactgacc cacaagcttt 1380 gctgatgtcc gcatgcagca gttgttctct cgatgattgc attatgttgg tgtctatata 1440 ctctgagatc aactcgaaga ccaagatcgt tcagactttg attcacatcc acagccaaga 1500 accgtatcga aaatacaaag tcgtatatgc atcagatttg gcgatgcagt tgattgttcg 1560 aacaaagtgg cgatttgacc gcgcgaagct gcaaagcctt ctcggttcgt cagatggaaa 1620 cccgctagca caatcactgt gtggatacat ctttgagttt tattctatgg atcggctgga 1680 gcagggtggg actttcgtgt atcgagagct gttttctgga aagaggaaac gcactccagc 1740 tgatggtaca atcgatattc cacggtcatc gcagcctcgg caagtagcgg agcgtgtgga 1800 agtcggtcaa catgcaaagc agctatatgt gcctgggaca tcgaactata ctgctattga 1860 tgcgtggatg ccgcagttcg gtggattcca gatgactgtg ggaaaaacgc atgacatcaa 1920 gggcggggcg gcggatgatt tggcgaaact gggtcagaac ggcaatcgac tcttcttttt 1980 gcttccacca ctctactaca aaactttcac caagaagact cctcaaacca tcaaacagta 2040 tgcaatcctt gttccgtatc ccgaggtgcg taatgaattg agtgcttcaa cgcttcaatg 2100 acatcagctt ctctttcatg gcctaccaag atattaccaa aatattactt cgtgatctat 2160 tcgtcatcgg aataacactc aattaatttt catcctgata aaaaaaagtt agttatatac 2220 taagatgacg tacttacttg aacaatacct cgctaacaaa gaacattaaa aaaaggcagc 2280 acagaagcgc tactaccagc gcacacgcga cgcgcttgtc atatcaaaag agctacgacg 2340 ataagaatag agcgaagccc aaaaccgaac ttattgatga caaaacaacg aaaccgaact 2400 taatgaatga attaattttt tttctcaaat aaaaagtcaa tcccaatata gtcaatgaca 2460 atggcttaaa acctccaaaa aggtataacc caaatatttg aattaattaa tttcagaatc 2520 ttttgtaatc actaagatat aaagtcgatc ctgatacatg atcaaaatat tataaagtca 2580 tatctacgaa gaagaatata gccaagcata tataggcaac atgtttgcat acgagctcga 2640 aggattaaag agattaaata ttcaagctat caaatggggt agtagctacc gtgttaaggt 2700 gcgtggtaga acgggtaaga tggtttatgt aagcaacgtt tcgcgcccaa tcaaccagag 2760 attggtagct aagcagtaca atgcttcgac tgaaaccctt gagaaacact tgtcgcctga 2820 ctacaaggct gatcctaagt accgttttta caatggtaat cacatggaat cacacctata 2880 tgagggtgtt gaggctactg atttctacga taagctcgag aacgttcttt cgactcaggc 2940 aagtgcgttc aaggtaaatg ttgctctcgg gtacgaactt gtgagcaaga ctgatcctga 3000 tgacactcgc tacttctatc cgaatctcgc taacacttat gtgttcaata agcctgtcgc 3060 tatcaacagc aaggctgata ttcgaaagaa ggtcatttcg gaaattcggt ctatggagtt 3120 ggctgacaag ctgaactatc ccagctcggg atataagctt aaggcgatca ctgcattcaa 3180 gattttcgtc taccatcgcg accatgctct tggggatagc gacgctgtta ttcctaagat 3240 tatccgcgaa aacaagcatg taatcaactt ccctaagacc aacaacaagt gcgtcttcca 3300 ctgtatcgcc tggcatacat tccagagccc taagaaggat cctcgcagaa ttcaggctca 3360 ggtgaaggag gtattcaagc gctactgctc tttcaagggg gtgaagtata cgttgagtct 3420 atttagaagt ttcaagccta ttgacctact acaactcgat gaagttgagg actgcttcca 3480 actcggtatt aacgtatata gcatggatgt agcttccgga aatgtagaat gcattcgtag 3540 atcggacaag gggtatgaag ctatggatat tttatcgttc gagaatcatg ctctttacat 3600 caagaacatt gacatgcttc aggctaagta tcaatgccct aagtgtgcaa tggttttcgt 3660 cagcgctgaa agagtaaaaa atcacaaaaa gaatcaatgt gagctcgtga atatcgaaag 3720 cttcccagct gagccaacta tctacaaacc agctcagaac gtaatacaat cactgcttac 3780 gaagtattca atcaagaata ctgaccagta catcgatcac ttcatcgttt atgactttga 3840 ggccattctt aagcctaccg cgactcaaca cggggagaat actgtcttca cgaacgaaca 3900 cattcctgtg tcggtatcag tagctgatag tttagccgag ggggtgcgtt gctttgtaaa 3960 tgacgatcca aagatgctac ttacggaaat gttcaattac attggtgatg tatcggttaa 4020 gattcagcag tacaatgtca ataaatatat gtcgcttcta cgaaaaatca tcaatgcaca 4080 tggtctgaca ggtatggaag tcccaggcgc taattctgat aaaaagtaca agatgtctga 4140 tgtggagatt tggattgaag agggaaagta tgccagcttc tttgactttc accgcagtct 4200 tggttttggt aagcaaaggt ctgattatgg gaaactgaaa cagcagcttg accaggtacc 4260 agtattcggc ttcaattgtg gtcgatatga tatttggatt aagaaagatt tgtttgccgt 4320 aattggtacc gacagcgtca aatctgtcat caagaacccc agctacatgt gcattgctac 4380 atcggacatg aaaatgcttg atatcactaa ctatgtacca gctggtacca gctacgacaa 4440 gtatcttaca acatatctcg gtggctgcaa atgcgatgac aaaattagat gtgtctgtgg 4500 tcttggtaag ggtcttttcc cttacgagta cattaccgcg ttcaatgttc taaagcagac 4560 tactatcctg cctaagtcag cttttgatag taagctccgt ggaacgagca tcacgagcga 4620 tgactacgaa cgagtgaagt tcgtgtggga ttaccacgag atgtaatcga tcaaagacct 4680 actgatctgg tacaataatc tcgacgtagt ccctttcacc aaagctatca aggctcagcg 4740 agagctattt aagcgcttcg atctggatat gtttgcggat ggagtgtccc tacctggtct 4800 ttcagagaag gttatgtatc agacctgctt caataatctc caatatccgg ataagaaacc 4860 tgctaacgca ttccgctttc cagcgaagcg catggctggc tacaagagtc aggatgctaa 4920 ggcaaaacga aaatttggta tgacgctcga gcacgtgaat acattgctgc aaaagcaaaa 4980 gtatctgtgt ggtctatgct attgtcagct gactgctgat accgcttccg ctgatagaat 5040 caataacaat cttgggcaca ctgatggcaa tatcttgatc agctgcattt catgcaacac 5100 cgctcgaaaa gatatgtctc ttcgggggtt cagatacaag aaactgcttg attttaacgc 5160 agacagattg gtgttttcga ttgacaagga ggaatctgag atttacggga aaatgaaaca 5220 ttgctggtgg accatcaatt atattcagca ggtatgctaa gcgaaacgag acgaagattc 5280 gtggagctaa gatctgcaag aaaattatcg gatacgacgc taacgctcta tacctatggg 5340 cccttggtaa tgagatgcca tgcggtcgat tgactacggt tgaagcgtat gatggtatca 5400 tcgatgacat caaagcagac aaagtattcg gctttcttga atgtgatatt cgaacaccag 5460 aataccttaa acagtacttt ggtgagatga ctccaatttt caagaatgta ctgatcgact 5520 gtacgaatga gagcgtcatt ggtaagcaca tgttcgaaca caatgaggcg cgcaagcaaa 5580 gccgagcaaa accagctcgc aagttgattg gtagctactt tggtgaaaag attctcatat 5640 acgcaccttt gctgaagtgg tatctctctc atggtttgga gatcaccgag acttacagct 5700 tcataaaagc gagctcccat aaagattttg ctccatttat ggaggctgta tcaaacgccc 5760 ggcgagaggg tgatgttgat aagtctaagg ctatgattgc cgagatgatg aaactggtag 5820 gcaacagtgc ttttggtcga tctggcatgg atatgagcaa gcacaaagag gttaagtatg 5880 agtcgagtga caaagctatt aagaacaaga tcgaacactt tacgttccat ggtctcgagg 5940 agcttaatga tgcgtgtgag atcacgatga agaagcgccg actcaataat aagaacccaa 6000 tccatttgtc gattgctatc tatcagcttg ctaagctacg catgcttcag ttttactatg 6060 actgcataaa tttctacttc gttcgctctg acttccagta tcaggagatg gacactgatt 6120 cggcttatat cgctttcagc tgtgataatc catttcaaga ctgtattaag cctgagctac 6180 gaacccactt caaggagcaa taaatacgat tggttcctac gtgactacaa cattgaggta 6240 gctaagtttg atcgccgtac gcctggtttg ttcaaagatg aatggtcagg tgatgctatg 6300 gtctcactat cgagcaagaa ctatatttgc tacctacccg atgagacata caaagtaagg 6360 gtttcagcga agggtattca acagggaagt ggtcgaaaca atggtgttct taatcctgat 6420 gggtttgaga ctgtcgtacg ggatcgcatc acgctacaag gtacaaaaag gggttcagac 6480 tatcgaaaga aaccaagtct atcatcacct atactcaaac caaaacagcg cttaactact 6540 actatgacaa acgtcgagta cttgatgatg gtatcacgac tgaaccactt gtaatttaag 6600 cagctaacca ctgggaattt ctttaatgta aatatagatc atggacgcgc tattaaagaa 6660 actctactat gacccaaaaa cggttttata ggagctcaag ctctgtatca gaaagcaaag 6720 gagttgaatc ctaagataac tttcaaaata gtaaaggatt ggtatgggag tcagcccgat 6780 attcaccgat ttcaggagca aaagaagaga ttcaatggtt tcaaaatagc ttcgcataac 6840 cccaactcgt ggcaaattga tcttgcgttt tggaagaaac ggccaatttt gactgctatc 6900 aacatcaact caaggctggg gtacgcaaag ctcttacgaa aaaagacggc agcaattgtg 6960 ttagaagcgc ttaaagcgtt tgttcgtcta cacaaagtgg atatcctaac aagtgataat 7020 ggtagtgagt tcatgaactt tcaggcccaa gagctcttca aatccaagac aattgagcac 7080 tacaacaatg agccaggtga tcatggaact atgggaaaaa ttgaacgatt caacagaacg 7140 ctgaaacaga gactaactaa aatgtccccc aagagaatta cgcaaaagct tatcactgat 7200 gttattgaaa actacaatac cacgtttcac cgttcgattg gtatgactcc aaatgaggca 7260 aaaggcaaag taatgaatgc agatctgagt cataatcagg tggaagccga tagaattgag 7320 aaggagtttg acgtcggatc aagcgtattg taccgtctca aaaagcagac gtttgataaa 7380 gaagctgctc gatggagcaa agcagtctat aaaatcgctg gaattgatgg ctaccgagtc 7440 caaatccgtt caaaaatggt cataccctct actaggcgcc aaacgatctt aaaatattca 7500 acacagagac tacagatgct gttattaatc gtggcgatat tcttgaagct gagaagatct 7560 tggatcataa gacgacacgg tctgggaagt acaaatatct gatcaaatgg cttggtaatg 7620 agcctgattc ctgggaacct caagataatc tccaattgat aaataagaat cggaagtcga 7680 tgctagaaaa agagtactgg gcaaaaaaaa aacacaaatg agtcataatt agctttgttt 7740 aaagtatata ttagagcaat cctctgtaag ctttgactca tttataatat atttactatt 7800 tttaattaga ttattgaaat ttctgacttg atatatatat aaacccttat tataaatatg 7860 tgccccaact gtttaaaaaa tcaacgtgag cttgctacgc tacgtcgaaa gctgtgggtc 7920 atgcaagaag tgagtagagt caagaatgag ttgataaatc tcgatgcatc agcaaacttt 7980 cgtaaaacag tagtaaatcg aaagtatcga catgagttgg aagcaatatt tggagttcca 8040 ttccattaca ttaaggatcg ctatctaaat cttctaaatg agcggaatag tatctgtcat 8100 aactatcaaa ccatttagac atgactcagt tatgccgagt ttgtggtaag ggaatttaac 8160 actactcatt tttttatgat tcgtttgata cagcaataaa atgtttcctt cttttacatc 8220 gctcgctcag agagagcaaa aacggcggga gcttcttgaa agagctcagc gccgcgttcg 8280 acaatccaac actaagcgtc agatgtatgc aggaacgtca tgggcaagtg atatcacgaa 8340 tggggttact acagtcccaa agaaatcaac agaatcaact cagaccgact catccgagtc 8400 tgctgagtca ttaaaaaaac actgattgat ggatactccc aaacaaaccc tgaggtctca 8460 acaccccgct tcgcctcacg tctgagcgac agctcaactc caaatgttcg ccctgtgatg 8520 atcgatgttg gagttgatag cggcgtgcag atggtagata gctcaattaa tactgatcgt 8580 gttaatcaaa ctgatagaaa tattcaagcg agacctcaaa catctgatgt tggtatcgat 8640 aacacacagc aaacagctga tgttggaatc gacaatgctc caaaaatgtt agatgctgaa 8700 acaaacatga aaagcatgaa aaacatggat accgaagatc aagtggaggc gcgatcaagg 8760 attaagaaat tgtttaccgc caatcctaat tgggtagcgc ttcgaactaa gccaattaag 8820 cgtaaaaccg ataaggatga caatagatac tttcttggtg aaaaggggtc attaattgca 8880 gccaaaacga aacgggtaga aatagtaaga cttattaatc gattgactgg gtggctacag 8940 aggagaagat tagggacatc tggtatgatg gcgaaagtaa atcaatcgat gagagcagtt 9000 atatgagact tgaagaccct ctttatcacg tttcactgac gagaaaacga aaaatcgccg 9060 atttaagtga aggtgatgat gcattccgtt caagacaacg tcttgaagac agcttcgagt 9120 ttgacacatc gacgtcaacc tcattagatc aagttgatag tagaaatcga ttgctttggt 9180 ctatttttaa gaataaagca gtgcttgagt cggctggttt gaaaagaaaa tcattcctat 9240 cctcaagagc atcagtaaaa catctgaggt tggatagaac tggatgcgtg tggattgatg 9300 gttcatcaat tagtgtattt ggtattgata gtgaaagagt caagccagcg attactaaga 9360 acgtcgattg gagatctaca ttccaaaaat ttattgattt agtcaaagat cgtggcgata 9420 tcgatctatt tactaatgaa gacaccacca aacttgcaaa agcctttgag ccacgcgatg 9480 gtgaggctcg gcatagaatt aagcttggaa tttatgaaga tatgaatagt tctctaacta 9540 atgctgataa cgatgcgaag aagattctca tggttacagc aaaatagcat ctgaaggagt 9600 tcgaattccc tttagactga aaccaatagt agataccaaa agtggtgtga aagctaatca 9660 aaattactac tttagtgagc ctaccgcagc aaaaccattt tacattagaa accacgaaaa 9720 caaagcggtt tctggcaagg ttttcaacga tcttatgaaa accattagat ggatggatac 9780 tttcaatagc ctgatgaccg ggtttgaaga catagagcga tgcgtctatg agaatgatga 9840 tccagcattg aaaaaaatct cgaagcttat cttcagctat tgaatcgagc gatcctcgac 9900 aatacaaaat cgacagatac atcagctcga atcaaatcct cagagggtac tcaatatcgc 9960 gatgacactt tgcaaaaact ccacgatgag tcagaagccg cattccaaaa gtatggcgaa 10020 gctcagagga aatacgatga ggcgaagcga acagtaaagg gtaagaactc aaaatccgca 10080 agatcagcgt tgaaggcggc aaccgctgcc atgaaagcga ccaaggctgt ctatcaaatc 10140 aaggctaaaa gctactccga tgctaaaaac tacaccgagg ttgatcaatt cagtgatcga 10200 caagacgagc gcacggttcg ccaaactgtg aataacatgg ttgatcgagt ggggtcagcg 10260 gttaagagga atcttcaggg tcgtgggtta agaggagccg gtgttgctcc actcgaaggt 10320 gtcgtacgac gcggtcgtac atacaacctc aatgagattc aaggcttagc tacaccttca 10380 gcttatgtat aacgtcagct cggaagcaag tatatccgaa ttcctgacct tgataacaaa 10440 acccttgtca ttattcagcc taatcgccgc aaatgcggac ccaaatgtca aatcagtgat 10500 agtctacaat caatgatccg aactcttgtg tataaaaatc atatcgatca agcttcatat 10560 gacaagctca gtatcgatga tagaaaactg ttcaaagaga tccttgcgat tacacatctt 10620 cagtataact tccatgacca cctcgaggat ccgttagact ctctaagagc tgaatatgac 10680 aagctgaaag gagagcttaa attaggcaat gataatcctt caattatcaa acagcttaag 10740 agtctctcag tggatatgta cagcggacgt ctaatttcgg attctgagtt taaggaaatt 10800 atcacgcgac tacaataacc atgttctttt tcaatccccg aattatttcc agctcaggcg 10860 gtagatatgg cgacaacgct gatttcaacg tcgcagagct aaaagccatc atgaaaaatc 10920 taatcatcca tgaccgccct taaaagaccc aggcagctgt ttgaacaacg gatcttgaca 10980 agacgctcaa gaaaacggat gcgtcaaccc agacggaagg aggaaaagta tgggcatact 11040 caactaaaaa aaatcgaagt ctgtaaagac gtttgctatc taagcaatac cagatctaac 11100 agctttattc gccattccgc gatatatact aatttttttc tctccaacat gtatttccat 11160 gatagcatct tcccccgtct tcgcatctct gatagaaacg agtgcactat ctccgagagc 11220 tacgatctga tcagcgcgca tgaatgtgga agcaattgcc tgagtaggtt catcagcagt 11280 taaattcgat ttaagatctt tgcttggtac gcaacccatt tcttgtatat tattaccaaa 11340 gaaacttctt agcatagaaa tccgctgatg gttctgggta atcaactttg tgtctcaggt 11400 agtatcaatg acgtctctcc tcatcattat gatcaagatg actaaaagcc ttcagaggcg 11460 tttgatcccg atattgggcg tatccacgag tcccgaaatt aaccttgcgc aactttcccg 11520 tattaagacg tacccatact cgatacttct tgttcttcaa agggcttaac tccaagcgct 11580 caatcctcat gactctatat tagccaaacg atcttttaat ctatctatct cacccaaaag 11640 atgctgaatc atcttcatat tataagccga tattcgactg taatcaacgt tgagctgctg 11700 cttagctggt tcaaggcttg ggtcttctcc cccttcaata tcatctctgt taaagatcca 11760 tatcaaatca gttagatggg ctgagaccaa atcctgagct atgagaccga tttcttgtcc 11820 aggcttgttt tccgactcga tccagtcata gagcttgacc tcacagctat cgtagagccg 11880 cttcacacga tcaattgggc atgattgaat attcttttta aggcgtcgat ccgacgtcat 11940 cgccatggct gtacaggcaa tgtatcctcc gaatataccc gctactgaat atgtgttcgg 12000 gccaagagcg gattctgtag ctccactatc tgttctgagg cgatacactg tcgttccgcc 12060 tgctccaaat acaaaactgt tgctgccagg gacgtgcagc ggagccgaag gacttgtagt 12120 accaagacta agacgacatg tggtagttag aatcatcgac gtcgagttat tgaccccaaa 12180 tttgaggtcg ttgtttgtga tgttcccgat ccatgacgcg ttcgctgtgg ttgatcgatt 12240 gccattatgg acttggatct ggaattgaac aggagtcgta ttcgacccgg ttagagtcat 12300 cattcgtgtg taagaaccat caagaaagtc caatccacta ccagtaatcg agaatattca 12360 ttcgttgctg tagagttgat cccaagctct gtcagcgatc ctactgttgt tatagctgat 12420 tggtttccat acgctaaaaa cccattgata acgccgaagc agctgatatc cccactcgtt 12480 gacagattat tgagcgagag ggaagtcgga atagatgtta aaaatcttga taggtcataa 12540 tacgtcgagt cctggcgcaa gttcgtgcag gtcagagtag tagccgctac cgaacttagg 12600 cctccgatat tcgagcctga gtcgcataat aggagtttat ttggcgttgc ggtaccaaaa 12660 ctaactccgt ttatgtattc aaaaaggccc aaatcgtata tagtcccgtt ctggcgatat 12720 tctcgacaat cgatgtagct tgaagtgcct gttatcgata tcgagtgcga tgacccactg 12780 aacgataaat ttccaccgat cgtaagacct gattaagagc cgagagacgt tatatttggt 12840 taggatccgg tttgtagcgt tccagtaata gtaaaagctc caaagctatt aattccgctg 12900 atattgccgg acgaatcgag aatcaaagtt ttgctgtacg aagcagttcc tgctattact 12960 ctgctaaggt agcccatcct gtaatcatcc ttgctcaaat atagtgtctg cgcataatcg 13020 tatgttagat aaccactcga gtctaacgaa agatagaatg aaggattata aatggatgat 13080 tgaaatgtag gctgtggatg tgaataaccg gaactcattt tgtttaatac tatatagatc 13140 aaacgatctt agtcatgaat gctattcctg actttggggc ttcgattcca aattgtttta 13200 agtctgcttc gatgggtgat atccccgcat tggatatgaa agctttgttt agaatggttg 13260 tgctcggtcc aagcttttca ggaaagaaca atctttgtat gtttattctc aagcattctc 13320 ctcacgtatt tgctcatcta actatcattg ctcataatcc tcatcaggag ctttatgagt 13380 atctccggga aaagttggaa ggattcatca catttgctga cccagatagc cctcctaaag 13440 tagatcaggt gcgtcatact ccattaagct ctaacaaacc ggagcttgtt atcatcgatg 13500 actatagcaa tgataaacta cttcagaaga atatcttctc tcattactat acacgtgggg 13560 gacactttaa actctcaacc atattcctaa gccacagcta ctttgccact gataagatga 13620 ttcggttgaa ttcagagtac gtagcgattc taaaagcgaa ttcgaagcgc gatttacaag 13680 tggttgtaaa ggtttttaac attaaaggcg ttgatgagcg atcaatcgtc tattactaca 13740 ataaagccac ggagcgcaaa ggacatatgc tgttcgtgga ttcagtcaaa ggtcaaatca 13800 gatacaactt tgatcgaccg atagatattg agcaataact ttagaatatt ttgtttgggt 13860 gaatcaatat acatatacca tggcaagttt tgttaaactc gattccactg acctcgttca 13920 agacaattat aacagcacat ggaaatacag ctttcctggt agtgctgccg attttaagga 13980 tgtggtatgc gcggtttaat cgattcaatg tataactctg aatacaacat cgatgcaact 14040 cagttcctga ataactcctt caaaatcgag gttccgacag ttggagccac atccactgta 14100 tctgttatcc tccctgatgg acactacagc tataccgata ttaatcgaag cattcagacg 14160 gctctcgtaa atgctggagc gtatttaatt aatccatctg gtgagaacgt tttctatatt 14220 caactaacgg aaaacagtgt gtattatgct gctcaattcg attttagcgc tactctaacg 14280 acacttccta cagccggtgg cacttggaca cgaccagcaa gcgggcttta ttcgtcaggc 14340 ggtactggtt tgccaacaac aacgcgtgtc actcgcatca tcattgataa cgcctctttt 14400 ggtaaagtag taggattgac tgctggtacg tatccttcag cgtctgcaac ggttttaagt 14460 gctcagctgt caaataccat tcctcagatt cacccaacct cgagctacat cgttcgatgc 14520 gacctgatca aaaacgagta tgttgcctct ggtgatatcc ttagtgcgtt tgaccgtggt 14580 gatgctcagg taggtcaatt aatcagctat aagccgagtc agtatgcttg gatgaactgt 14640 cataacggcg cgagaacgtc tattacgatc agtatttata atcaaaacga tcaaaaggtt 14700 aagttccgtg atacttctgt ctcgatcatg ttgttgttga ggccaaaaaa ataagcattc 14760 aatgattttt tttctcccaa tccgcagaat agggtggaac taatttaatc gaaaagagcc 14820 agcaatcatt gctttcttac gtttagcacg gagtgcagcc atctgagcct tcatttcggg 14880 cgaaccttta gctggtttct tagggactcc tacaccatag cgtctcttta cctcacctcg 14940 aaccgatttg atcaggttct catgctctgg cttggttgct tttgatagta gaaacttctc 15000 gcctgcatcg actgcatcag ttagaatccc cttacgttta gcatgcccga gagcattttt 15060 tgccgccttc ttaacatccg ctaccgaaat acgaccacct tctttctcta catcgagcaa 15120 ggctcggacg taggcagagt tttgagactc taccaggggt atcgctgtca gagtcatata 15180 ctccaactcc tgtcaatgac ttaatagccg cccttgcggg gattcctgct tgaggggctc 15240 caaacgctgt agcaatagca ggcactgccg catccagacc cttgctcagc aaatcactat 15300 cttttacgaa tttgaatgct gtcgataacc ctgatttgac tccaaatgga tcctccttat 15360 ggcttcttgt agcctttctt gatctcatgc ttggtaatgt caagtctaac cccacgaccc 15420 gccttgcgtg cctttagtgc tttctcatac gaagctgggt ggagatggat aacagagcct 15480 gaacccttga gttgatcagc tgtaagactt agcttacctg tcttgagggc tttagtcagc 15540 ttgggagctg gaacatcgct ggaaatcgtc aattcgcgat acattattgc tatatttcct 15600 gaaacatatt taatacagaa ttgacaaatt cagatctttg aatcgattca atagattcat 15660 cttatttttt tgtttgcaat atagccatag catgcaaaac ggaccacaat aatcgccata 15720 agtgccttaa tattgtttgg gattgtatcg cccgatgccc tacttcgtag gtgccgcttc 15780 ccccattgaa tcaaagaatt ttccatcatg aacagcctgc cagtgtccta tatcgagatt 15840 aggcgatcta agtagaacca gatatgatcc tttcttcgga agcggctttg tgatctcatt 15900 tgactaaaag atagcatcaa gatgaacttc aatacgcttg gcaagttcaa ttagatcatg 15960 atcggatgta ataggcttga cgagttccac aataattata tttgataaag tatatattac 16020 atgccatata gaatctcaac gatgtctgaa acacaacttt ccgaccaata tctttaccag 16080 cgctcgctca agagtgatcc ggagattaaa gtctcctctg gcaagcgcgt gcctttcgtt 16140 atcgatctta atcaggggtc ataccaaaac ggtgttatta ctatcgatgc aacatcccag 16200 cttaatggaa gtgaaggatt tgcttcgctc cgtgatgcct acattatgct accatacaag 16260 gtatcgatga aaaacactca tgctcctact gttcaggcta atcctgctaa ccgtttttgc 16320 tggtcgctga agtgcggaat ataggagtgt gatcgattcg atgagtcttg agctgaatgg 16380 taagactatc gtttctatgg ctgactacaa gctgttttgg agcaatattc gtgctcagac 16440 tggatatagt cctccgtatg ttgaaaagca tggtgcagag tctttcctct tccctgatgc 16500 tgctcagtcg tcgaggtaca gtgctacggg ctcttttact ggagacgggt attcgaataa 16560 cacagcgttc tcctcctcct tcaccgccgg cgctatctct gccacagctt cagtagcaaa 16620 tgatggtttt gttaagcacc ttctttcgaa cccattaaat gctggagctg actcatctac 16680 gtcgtggcct tccactggtg ccgcatctgc tacaaccacc atcgctaatc agctgggacg 16740 tggcgctttc gtggcgggtg gctatgctgc tggcgctatc atgggaacgt ggaacttcat 16800 gctaaaaatc aagcttgttg atctccaccc gattttcaag gagcttgatc ttatggctaa 16860 ccctcaaatc cgtcttcgtt tccgggttaa tcagggtact gtagctattg atgctgatac 16920 ttctcgttat atgacgctta caagtactac actatcgagt ggtaatacat gccctgtaat 16980 gattgattcg tcggcaagta gtaatcatat ggttagtgtt ctttcaggtt caacagctgg 17040 ttctactgct gtttcatggg gtgctgtcgt caatgcgctt gaacctacta ttgatggaac 17100 ctacatgcct ttcacgactt ctcgactgta tgtcccgttt gttcatttat agaaccctca 17160 ggctatcatc tcgaagccag taaagaaggt ccgctacaac gaccgttatg cacagtggtt 17220 ttaccagcgc gccggtattg gcaagcaagg gacacagctt aatgcttctt tcgatctgca 17280 actttcggct tctgtaaaga atgcgaagta cgtcattctt ttaccatttg ctgagcaaac 17340 tggaaacttt actactgctg ctgttcaaca gtttcagagt ccgtttgata cggttccttg 17400 gacacttcag cctggttcga gcattcgcaa cttcaatgtc cgtatcggtt cgactcaatg 17460 cttcgacatt agtcatgact acgatttcca ccaattcaca aacgagttcg ctaaaattgc 17520 tgcgattaat ggtgatctga cccctgagct tctgaatgga ctgcttgact atcagacgtg 17580 gtctctaact aaccgcatcc ttatcgctga cgttagccgc ctgacggagc gtgatgtacc 17640 tcaggctatt cagatccagg gtacaaacgc tggttgccag ggaacaaaca tgcttgtttt 17700 ggttgtgagc gaacaagagc tctcctacga tcgtctaacg ggagaggttt tagattttac 17760 cacggcttag ttagaatgtg tttagtaatt tctgtcatag gcaaaaaaac attttttttt 17820 gtcgcttaat taagttcgtt gagtagttta gggcatttat caattacgaa tgggttctta 17880 cgaagccaat tgatataatt agaataggtg cgactaattt gctttagcgt cttccccttg 17940 tacttgcccc aactcatcat atacgaatta tcattgctaa gaaacttgga gtgaaggaaa 18000 atcttgatat cctcagtaat attgagactg ggttggttgt gcatccatcg acaatatctg 18060 ggatcataag catatacttc ttcgatcggt gtgcccttgt attttccaaa agttagttcg 18120 ttcgacatgt tattagttat gtgtatctat atacataggg tcttattttt ttttgagaaa 18180 aataaattaa ttctgaaatt cagacaaacc tgttctcagt ggtcgagcgg ttctgaaact 18240 accctaagat cgaaaagacg ttgctttcgc tctcaggtgg tcgagaggtt gcgtcgccaa 18300 aataccagct gcctcgaaag aacgttccag aactggtctc ggtggtaaat tacggaaagt 18360 aaaaaaactg ccggcgtaat gttccatgtc atactact 18398 // ID Gypsy-18_PR-LTR repbase; DNA; PLN; 448 BP. XX AC AAQX01002488; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PR_; KW Gypsy-18_PR-I; Gypsy-18_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-448 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002488; Positions 310 757. XX SQ Sequence 448 BP; 110 A; 122 C; 106 G; 110 T; 0 other; tgtggtggat tctggatcaa gccagcttcc gccgccagac gtgaacttca agacttgacc 60 aatagacagt gtgcgacttg atgcaaccag gtcaatcaca gaaggagcta cgcctgatcc 120 tggtgcatca aggtcagcgt gcttccttgg cgatggcaga gccagacatc tggctctgac 180 caaactttca tggatcttgt agaacaggcc gccagtgatc caagtggaat cgcgggttgc 240 cttacatgtt ccctttcatg ctgccatcag catgaaggct tcatactttc attgagaagg 300 atggatggtg acgactgtcc aaatctctca ctcttcaatt tgctagttac atcacaagct 360 gccaatacac taggctacaa gttccagcag gatcgccacc tgcctcgccc cgtgttttga 420 gttgcttcaa cctccggaaa acagcaca 448 // ID Helitron-N2_PPa repbase; DNA; PLN; 172 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous Helitron transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N2_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-172 RA Bao W. and Jurka J.; RT "Non-autonomous Helitron transposons from moss."; RL Repbase Reports 10(7), 1036-1036 (2010). XX DR [1] (Consensus) XX SQ Sequence 172 BP; 61 A; 39 C; 32 G; 40 T; 0 other; tctatataat aaggaagctt aggtataaga caaagagaca aagaagcctt ctcattggcc 60 aaaatcaaag aaattgttaa ccagcagaaa gccctgcata acctgcaaaa agacctccag 120 tttactatct gtaaacagct tttccgtgcc caacggcatg ggtttccgct ag 172 // ID FOLYT1 repbase; DNA; PLN; 2615 BP. XX AC AF057141; XX DT 28-APR-2000 (Rel. 5.03, Created) DT 28-APR-2000 (Rel. 5.03, Last updated, Version 1) XX DE FOLYT1 is a DNA transposon. XX KW DNA transposon; Transposable Element; FOLYT1; TIR; transposase. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-2615 RA Hera C.; RT "FOLYT1."; RL Direct Submission to Genbank (03-APR-1998)Genetica, Universidad RL de Cordoba, Avda San Alberto Magno, Cordoba 14071, Spain. XX DR GenBank; AF057141; Positions 1 2615. XX CC FOLYT1 has 9-bp terminal inverted repeats; regions 421-1347 and CC 1503-2456 encode a DNA transposase. XX SQ Sequence 2615 BP; 698 A; 634 C; 587 G; 696 T; 0 other; tagagatgga tttaatgctg catcattaca taaaatgcgc tttttgcatt aaatatttaa 60 agcaagacgc gctttgtatg cattatttcc tgtcgcactg agcgtgctta aagggttaga 120 gtgaatatga tgagcagcag caaatgtgtt gattgatgtc ttaagttttc tcttgtgcgg 180 ggtattccat cccgcacagt tacttaaagc atatagctag attactaatg cctaccctgc 240 gacatttcct cttctatctt aggcttagcg ccttctataa taggtttagt gcataggaac 300 aatataagtc cttttccgac ctccttttct ccacagcctt caaccgtctg tcgatgtatc 360 cccctgaaac ttctcaattc gactccccac taccttcaga ccctccgtgt gtcttctaca 420 atgcccagag cccctggaag gccagccgat caccaggtcc accgagaatt tatcacgctt 480 gcctccgacg ctagttcggg tttcaagaac tctagagtca agtgcaagca ctgcggccac 540 gagataacca agggcactac tcgtcagaag aagcacttac ttcgccattg tcccaattac 600 aaaaggcagc aacagtctca gcagcctcaa cttactcatc actttcctgt agtggacaag 660 acctttaagc agatgcttga tgagcttgct gctatagcaa tttttgctga tggccgtcca 720 tttaacctct ttgagtccaa acgaatgcgg attctgttga gcaagctaaa cactgcctgg 780 caaccaccgt ctcgtcgccg agtacagcgg ctgctagccc cgacttattc tcagtaccac 840 aatcaagtcc aggctatcct cgaccaagca gaacatatca acgtaatctt tgacgcctca 900 gacaacatca caagtcatcg aattatcaat atctcgatac aggtggcaaa tggtacggcg 960 ttctactgga agacgtttga tacaggacag attcaacaca cggctgagca ctacatcgat 1020 cttttgtatc ctgagctgga gataatttgc aagggcaact tcttgcgaat taactcgttt 1080 tgcacagata cggatagcgt gatgaggaaa gctcatgtgc atttggcagc aagaaaggaa 1140 ttccaacatt gcttcttttc cctctgcgat tcacatgggt tacagctact catcaaggac 1200 atcctagagc tgccgttctt tgaggaggca ttcaaaaacg ctacgttaat tgtcaccttc 1260 ttcaagaagt cgaaactgca gttggctcga ttgagagaag cacaaaaggc tgcttggggc 1320 caccataagg cgtttttatc tgcgtgggtc tttcagtttt tctgactcct agctatagct 1380 gactgctcgc tttagtgtaa tcacacgctg gggcagtcag ttcaatgctt tacagtcagt 1440 tttacgctgt aaagagcctc tccaagcata cgctcgccgt cctgacgtaa gggcagagct 1500 agcctccggc tctctcgagc ttccttccaa aggtgctgga gtctgtcaat aaccctcact 1560 tctggatacg cctagagact gttttggcca taattaagcc tgtcaacagt cgtcagcgtg 1620 cctcagaagc cgatcgggct cacatcggcc atgtgatccc tcgttggctg gagattaaag 1680 cagaatggaa agcacttgac gagtctcagc aacatcaaga cgtgaatttc agcgagctgt 1740 attccgtatg gttaaaccgt atggataaac agacatatga tattcattat gcgggatttg 1800 cattacggcc tgacacagtc gggactaagc ttgaagaaca gctgatgatg aaagtgctgc 1860 agttctttaa gtcagcagtc aatcctgctg actacatcaa tattgttcga gaatttaacc 1920 acttccgagc acaatcgggc ggccggtttg ctgcaggagg cttagtctat tcaaaagaat 1980 ggactccatt agatgcttgg atgcttcttg ataaccaagg cagcaagctg gctgcacttg 2040 cagtccggat ctttggaacc atagccaatt cagttccctc agagagatca ttctcggcag 2100 ttaacttcct ccacagcaag gcacgcaaca gactcacacc agccaacgct gacaagttgg 2160 cgttcatcta catgaacgaa cgggtgctag agaggataac gcagtctcag aatcaacctc 2220 ttgatcatcg caatgatcat tctacggtgg tcagctggga agatttggca gaagacggtt 2280 ggcttacact cgaagatacg tatatggaaa ttcattgcgc atcaaatctg gaagttgacg 2340 ctgttgtcgg cgagttcact caccaacccg cctccgacgg agaagagaca gtggtggaca 2400 cacttgaggt cgaagatggg tcagagagcg aaggagcggg ggaaaaattg acctaatttt 2460 gcttggttgt ttgtatgata tggcccatgg gcagcttcat aaatgggtcg taatattgca 2520 ataaaaagcg cgctttttat taggaataaa atgctgcttc gttataataa aaagcagctt 2580 aatacacatg tgtattatgc acgtgcccat cccta 2615 // ID Copia-4_PSo-I repbase; DNA; PLN; 8641 BP. XX AC AAQY01000038; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PSo_; KW Copia-4_PSo-LTR; Copia-4_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8641 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000038; Positions 1277 9917. XX CC 'TTTTA' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 20..979 FT /product="Copia-4_PSo-I_1p" FT /translation="MASEGKNASGLESFKGKGYAMWKDKLLTHINTQDQLY FT KRKQLEKGLPDVRVLMADFLRGSPEQPPPVPEQGELSEKESVAMRWAVMDW FT EKAKGDLQNLLNQVLPNFFLSTLPDLVSQMEPCEVVKALEKDYGQGDAAGL FT IELTRAWSKLAKRQWRDLRTLFGQLKKARNEINRRTQSLLGEDMVSESWLC FT VEVLSQLPSEFWASSISMKKGEFTVEKVESALRRIFREKSKKEISGNMEKG FT IPINNVRAKPAQKRKHVPKTENECFYCFETGHYKADCPVMTRDRDPNREGG FT QLFQTDVKTAPGANKVNRRLISKRSSGR" FT CDS 1206..2858 FT /product="Copia-4_PSo-I_2p" FT /translation="MSIIKLSYVAFDKQCDSNLLSAYYLAKQGYRHLQSRT FT GDFPFFFGTEGKFLFAAVAIGEVYYLPSTKHRKKMILSAQTLKYERLIKEW FT HLRLGHVGKDRLLKIISNLKTGKYLNLSYSRLKEISFYCKTCPEMKDRRMS FT YRNMVGDKPTEPLHTLHMDTTGRLKLNGLYGSFGYRYALAVADGATGYKWY FT FPLKSLKEVSGKIRDLLKQLSVQFPYKVKKIRTDGGTEFVNKEVSKLCTKL FT GLMFQHSNVESQEENGSAERAHQIMMGGVRCLLRGSSMAAKWWPEALLYMV FT EVTNRLPMARLGMKTPYEMLHKRECNGLALQIWGSTCFAHIPKTKRKDPKL FT GGRAIECKLLGISPNYKGYRLLDVKGNKYITARDVKFSPVVTEAMINQSFP FT TEKIVESKSETQITSDLGNRSRKESEPEVEVVSSQSVTSEPTLQEVGDDKQ FT DTNQRPRRSKRLRSQKPTSAKSVTAKMCHIPIPKSLKEAFAGPYAKQWEAA FT VKAEFEALLKNGTWTLVPLPPGRRALGCYWLFDVKYNADGTVDRFKARLVV FT QGNT" XX SQ Sequence 8641 BP; 2408 A; 2019 C; 2342 G; 1872 T; 0 other; tttcaagtac acgccagcga tggcatctga aggcaagaac gcgagcggcc tcgagtcctt 60 caagggcaag gggtacgcga tgtggaagga caagctgctc acccacatca acacccagga 120 ccagctctac aagcgcaaac agcttgagaa agggctgcca gacgtgcgcg tgttaatggc 180 ggacttcctg cggggaagcc cagagcaacc gccaccggtc ccagagcagg gtgaattgtc 240 tgagaaggag tcagtggcca tgcgatgggc ggtgatggat tgggaaaagg caaagggcga 300 cctgcagaac ctcctgaacc aagtgctccc gaacttcttc ctctcgacgc tgccagacct 360 ggtctctcag atggagccat gcgaggtggt taaggcgttg gagaaggact acggtcaagg 420 agacgcagcc gggctaattg agctgacccg ggcttggtca aaactggcta aacgtcagtg 480 gcgcgacctg cgcactcttt ttgggcaact caaaaaggcc cgaaatgaaa ttaatcgaag 540 gacccaatcc cttctgggag aggacatggt cagtgagtca tggctctgtg tcgaggtctt 600 gtcccaactc ccgagcgagt tttgggcatc gtcgatctcg atgaagaagg gcgagttcac 660 ggtcgagaag gtcgagagtg cgctgcgtcg catcttcaga gagaagtcga agaaagagat 720 ctcgggcaac atggagaagg gcatcccgat caacaatgtt cgcgctaagc cagcgcagaa 780 gcggaagcac gtacctaaga ctgaaaacga gtgcttttat tgtttcgaga cggggcacta 840 caaggctgac tgcccggtga tgactcggga cagggacccc aacagagaag ggggacaact 900 gtttcagacg gatgtgaaga cggctcccgg ggccaacaag gtcaatcgtc ggctgatctc 960 gaaaagatcg agcgggaggt aagaagaaag tatgcatcat atctatacag gttacagagg 1020 cttacactaa cggatgacct gtgggctgtg gatacagggg ctggccatgc tgtaacacca 1080 gacaaagggt ggttcagcag ccttcgccca agccacggac accagttcac atacggcaac 1140 ggatctacat ctgagagctc actaatggtt caatacaaat tagtgttcta aattctgatc 1200 acaatatgag tatcataaag ttaagttatg tagcctttga taagcaatgc gatagtaatt 1260 tgctgagcgc atactatcta gccaaacaag gatatagaca cttgcaatca aggacaggtg 1320 acttcccatt tttctttggt acagaaggca aatttctatt tgcagcagtc gcaattggtg 1380 aggtttacta cttgccaagt actaagcata gaaagaaaat gatactgtct gcacagacac 1440 taaaatacga acgcctaata aaggagtggc atttgagact cggtcacgta ggcaaagaca 1500 gactgctgaa aataattagc aatctgaaaa caggaaaata tctaaatctg agttattcta 1560 gactcaaaga aatatcattc tactgtaaaa catgcccgga aatgaaggac cgacgcatgt 1620 cgtatagaaa catggtggga gataagccga cggagccgct acacacgctc catatggaca 1680 ctacagggcg ccttaaactg aatggtctgt acggatcatt cggctaccga tatgcacttg 1740 cggtggcaga tggtgcaact gggtacaaat ggtattttcc gttgaaatcc ctaaaagaag 1800 tgtcagggaa aatcagagat cttctaaagc aactctctgt tcaatttcca tacaaagtaa 1860 agaaaataag aacagatgga ggtacagaat ttgtaaataa ggaagttagc aaactctgca 1920 caaaattagg acttatgttt caacattcaa atgttgaatc acaagaagag aatgggagcg 1980 cagagagagc acaccaaatc atgatgggtg gtgttagatg tctacttaga ggctctagca 2040 tggcagcaaa atggtggcct gaggccttac tttacatggt cgaagttaca aaccgcttgc 2100 caatggctag actcggaatg aaaacgcctt atgaaatgct ccataaaagg gaatgtaacg 2160 gtttagcgtt acagatctgg ggatccacgt gttttgcaca cattccaaaa accaaaagaa 2220 aagatcctaa attaggtggt cgagcaatag agtgcaagtt attgggtata tctcccaatt 2280 ataaaggata ccgcctgctt gatgtcaaag gaaacaagta catcactgca agagatgtga 2340 agtttagccc agtagttacg gaagcaatga tcaatcagtc tttcccaacc gaaaagatcg 2400 tggaaagcaa aagcgagact cagattactt ctgatttagg aaatagatct agaaaggaga 2460 gcgaacctga agttgaagtt gtaagttcac aatcggtcac gtctgaaccg acattgcaag 2520 aagtgggaga tgacaaacag gatactaatc agagaccgcg ccgctctaag cggctaaggt 2580 cgcaaaagcc gactagtgct aaatctgtga ctgctaaaat gtgtcatatt ccaattccta 2640 aatctttaaa ggaagctttt gctgggccat atgccaagca gtgggaggca gccgtaaagg 2700 cggagtttga agcgctcctg aaaaatggaa catggactct cgtcccactt ccgcctggta 2760 gaagagcatt aggctgctat tggctatttg atgttaagta caatgcggac ggtaccgtag 2820 ataggtttaa ggcacgcctg gtcgttcagg gcaacaccta aatgtacgga attgattata 2880 aagaggtctt gtcccctgtt gctcgttacg agtccttgcg tctactgcta gcgctggcta 2940 cgtcgcttgg cctgcactta catcagatgg atgtatcaac ggcctttcta aatggcctgt 3000 tgaatgagag catctacatg agacagcccc ttgggtttcg ccacggatcg gcctcccttg 3060 tgtgcaaatt acgcaaaagt ttgtacggtc taaagcaggc gcctagaatt tggtatggcg 3120 ttctaaatga gtttctaaag tctttaggat ttttgcggtg caagaaagag tactgcttgt 3180 accacaaaaa gtgggaggtt gatggagtcg tccacacgct tattgtttgc gtgtatgtgg 3240 atgacttgac cattgcgggt tcacatctga gctcgatcca agagctagaa caaactatca 3300 gagaagttca caatgaaaga tttaggagag ctacattatc ttctgaaaat ggaaatcaaa 3360 agagatttag aagctaagac cttgcggatc tcgcagcaca agtatattca tgacttccta 3420 cacaagtata atatgcgaga ttgtaatact gagccaacac cacaggcaaa gagtattata 3480 ctacagaagg aagagactct tacgccagag cagatcgcgg ctcaaccgtt cgattataga 3540 ggattagtga cgaagtaatg atcccgctga tcaagacgca gaacatggtc gacgaggccg 3600 aaggggtcca cgtcaacgga ggcccggtcg atgtgctgca gattcccggc cgagaatgga 3660 aggagttccg gttgcaacgg aagcggccgc ccccgacgac tcacgtaccg tggatccgac 3720 ggaccgacaa gctcatccct acggtgaagc ggttccacaa gggacgcccg cagcggatcc 3780 gactgacgaa cattgacact cggctcacga tctgctcggc tcacacgacc ttcgtggtgt 3840 gggtacccgt ggggtcgttg ccgaagtctg aaggatatgt gtgactcgac tccgacaagt 3900 atcgagaatg gcaagttctt tcctacgaag cggtccgcga taagacgctg ctcaagcggg 3960 aagccgagct ttacgctcaa tggttagccg gccagccgtc ggcagtggac cgacccgagt 4020 accctattcc aaccggactg ctccaacgtt ctcccgaata ctctcggggc gagcaaatct 4080 cggagctgtt cgacagcgat gggggtgagg attctgacgg cttgccagtg ggcaatgatc 4140 cgggaccaag ctccttggga ccaggcagaa gcagtcaagt cgctcccgac gacacgccag 4200 ccgatccaca agtggccgaa attgctcccg atcaaccctc gataactcag tttccgactg 4260 tggcgacaaa cggagacact ccggatttga aaccgcattg tgacctcacc aatgaagcac 4320 cgacaactca tctggtcccc cgttacgacg cgcacactcc cctcgctatg gcggagcata 4380 cctttatgtc ggtgatgagc gtactggaca tggacgagga tgatgcgaca aatgacagcg 4440 cgtggatacc gactggaagt ttcccgacga ctcctactgc gtcaagcctc tcaaagacac 4500 ggctcccgaa gagtcatacg gggtgcgtgg tatctttcgc gggcttgaca cagcctgggc 4560 agtatcgtgc agatggaagc tgcgcatgga ttgtgtggcg cctaccggag tggaaattga 4620 tgattgccgc gaacgcttac ctcgccgaca cgacgagccc ccttgcccag agcgccggta 4680 tgacatacgg cgtgctggcg gctttacaac tcggtgccga cgacttggtc gctgttagca 4740 attcaaggct ggcgttgttg cactcgctag gggcagctga ctccggggcg atgactcaac 4800 cgagttacca cgaggaggtc aaggcccgac tgtgatctgt gagatacatt cacgtcgcac 4860 agaaatacaa tgctgccgcg gactcgctag cttctgaagc gttggaatct cagacgtcga 4920 aggtggtttt gagtggcgat aggaaggcca cgctctgtga gctcaaccaa ctccaagctg 4980 tgatctacaa aattgatcca gacgggatat ccccgcagaa cgtgcttccc ggtgattctt 5040 ttcggtccca agatttctcc agcagtagtt caaggagcat tgagcctacc atggccgcgc 5100 cgataactcg gtcacaagcc aagctcaaga cgaagccacc gatccggacc gacaagacat 5160 tggaaccact gccgacgact ggtgaatgcg agttttgtgc aaacagtgca ggttatccag 5220 agaacggaca gaccaacagc acaccgaaat ctcgcgtcga ctgggtcagt cgtatctggc 5280 cgtacatgga gcggggcaag aggctgatgg aatcgaggtc tctgcgtacc aacctctgcg 5340 gtctcaaagc accaatgctg cacgtggact ttgctggaag agtgtcgtgg tcgtgcgcaa 5400 cgcctagcct ccgtccgcga caactcaacc tcacggtgaa ctgcgcctgg ggcaatgcag 5460 cccaggagtg cagacgaaaa tggctactgc agctttgcat gctacatgaa gatcgaacgc 5520 gaatgatacg aatggagaat cccgattgga acgaactaca acttcccccg acaactcaag 5580 ggcagtgctg gcgaagactt ggtgtgcttg gagctcggac ggaggtgcgc tgacaactgc 5640 cgatgacttg aagcgcctga agcaggatct acgctgggtc agacgcgcta cggcaagatg 5700 gtggctgaga agtttttctg aggaccggat cggccgcagg aacttgctga agcctatgcg 5760 caaggagcta ccgcagtcta cggcctcacc aacctcgtcc aggtcatcac gcatcatgat 5820 gctgatcatt gtatggttcc cgagaaccgg gtggttgtac agaatcaagc cgagcggtca 5880 tggagtgtcg tgccgttgtc tacgaagcag aatctgacga aagcgatgat gccaccgctg 5940 ctcaactcaa caaaggtcgt cgaacggcgg cgaaggcgga caagatgtcg gcactatacc 6000 ggacgaggtc gaagacacta tgcggcggtc gccaacccgg ccccgacggc tcggtgcgaa 6060 cccgagttat ggaaccaggt aagcctacag cagcgagcca ccggcgcgac attacgacaa 6120 cgcagacgcc taccaagcac gcaaccgggg caaacaatac cagacgtcgt taacagcgaa 6180 aggaagcaga agcagaacgc accacgacgc tcgccatcat gtggttcaca tagtggtggg 6240 ggcagctgtg gtgtagtgat ttggcggtaa acgagaatcg agctgacgac caagcttcag 6300 tggcgacccg agtcgtcgga catgttcagc aatgttcggc ggatgctgat tggccattct 6360 ggaccggtgc cgaagactcg tcgacaccca agttcgagac ccaggacttc aagtacgatc 6420 cgagcttaca gcgaactttg acccgagatc cgcacttaag acgaccgttc gagccccggc 6480 gactgctcca agttttcatc gtccaataga gtcatcgaga ggcctcttgg ggcgtcgagg 6540 aggctctgaa gggtcggtgg ttacttggga agatccaaaa cggacgcgtt tatactagat 6600 atttgtattg aaccatagga aggagaagat agaacagata tgccctttgg gcaacaagaa 6660 caaaaccgct tttcctccca accactcaag gaagacgtcc gggctatcgg tgagttcccg 6720 tagcaattgg ataaatctgt tggtaggatt atgactgtcg gtggacgcgc ctgctagtat 6780 cgtagcgtgc gtttacccgt ggtcaggcca agagtagtga agaagtggcc gtgtatacga 6840 agggcgagtc atcgccgagt agtggaggag cgagagcgca ctccatttat ccttcccgcc 6900 ggagtatagc tccggtaccc tcgtatcaag ccgtgactgg ctgggaccct tccttcctga 6960 gggcctgcga ggtttatatt gcgtgtgaga gcgtaccatc ctttgctcgt ggctggtgac 7020 gctgggtttc cgtcagttga ctaagcggaa acacggtgca cagaggaaac atcaacccgg 7080 tgcaagggaa agttcctggg ccttgaggtt ctaaccctaa caagcccatt gagtcatcgg 7140 gacttggtgg gtgttgttgg tggggaaagt gtgctattat ataatttagt gtgtgttcct 7200 acacgacact agacctgaca tagctaatgc tgtgagggaa ctaagtaagt acttgtcttg 7260 ctacaataaa agtcactgga gagctgctca gcgggtacta aagtactgga aagaaacgtc 7320 gcagtatggc ttaatatatg atggcaatag gactattaag cttgagctat acacagacgc 7380 gagcttcgcg aatgcacatg agcaaaggaa atctattacg ggttatgtat cgctactcgc 7440 tggtgcatgc atcatgtaaa gcaagattgt ataagcctca acacagcgga gtcagaacta 7500 gtcgcagcaa gtgagggcgt acgagaagca atgtggctac ggctactata aatgagttag 7560 gatacggaca agtactaccg actcagtgtt ggtgtgataa tactgccgcc attagtatta 7620 ttaagaaccc ctgtagtcat tcgtccacaa agcatattga tatcaggcat ctttatgctc 7680 gtgataaaca tgaagaggga agtatcacag taacgtactg taatatgaac gaaatgatag 7740 cggatgcaca tactaagccg ctcagtcaga accagtttga aaagctccga gacatgatgg 7800 gagttaagga tttgagtgtc tcaaattaac gatcagactc taaatagtat caatatcagg 7860 aacaagatga tacagagcaa aatgtaacca acagtgtcaa taaaagtgat tttagaccaa 7920 aaataagtca aaaagctaca tatagactat cacaaacgga gatacaaatt gagaacagag 7980 acacaaatta aagccaaatt tacggagtga gcaaaattaa agatcgaaag gcataattaa 8040 ggcctaaaac ccatgctaat tgccgcacct agccctattt taaggacagt gaaccgttcg 8100 ggctatcaac cccgtactcc gagtgctgta cactcgattt aagctaaatt ttatgctaag 8160 tgactcccta atctgtgcca tcgaaaagta ctttggtcat aagccgggtg gtcgcgagta 8220 gcaggtagat ctgacttccc cccgacattg tccccagttg gacggttggc agcctgtcgg 8280 cgcaaaaagc cgggagcagt gtgctctctg tggcctaggc caggtcttcc ggtcgtcagg 8340 agatgtcggg tggcttacgg ccccgtcccg aagggtaggc aagcggatga gggagtgaga 8400 gccaaaagca aaaggcggag aagaatatga gaaggggctt ccgtaatata taagataaag 8460 tatgaacatc atgttgggca gttctcagtt aagttgggta ccagcgctgc cttgaatata 8520 ctattttagg tcacctggat tttaaatttg ggcatgagac aaaaaagaat ctgagaacga 8580 agttgaagtc gttgaagtcg aggaaagatc ttgagtacat cgctgtcatc tttagtggga 8640 g 8641 // ID COPIA_ES repbase; DNA; PLN; 284 BP. XX AC M94474; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Equisetum scirpoides copia-like retrotransposon reverse DE transcriptase gene, partial cds. XX KW Copia; LTR Retrotransposon; Transposable Element; COPIA_ES; KW Copia-like element; ESCOPIA; retrotransposon; KW reverse transcriptase. XX OS Equisetum scirpoides OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Equisetopsida; Equisetales; Equisetaceae; OC Equisetum. XX RN [1] RP 1-284 RA Voytas F.D., Cummings P.M., Konieczny A., Ausubel M.F. RA and Rodermel R.S.; RT "Copia-like retrotransposons are ubiquitous among plants."; RL Proc. Natl. Acad. Sci. U.S.A 89(15), 7124-7128 (1992). XX DR GenBank; M94474; Positions 1 284. XX SQ Sequence 284 BP; 83 A; 43 C; 75 G; 83 T; 0 other; gaattcgatg ttaagactgc tttttttctt ggtgatttgg aggaagagat atacatggag 60 caaccacagg gctacgtggt cactggcaag gagaaaatgg tgtgcaggtt gaaaaagagt 120 ctctatggcc taaagcaagc tccaagacag tggtatttaa agtttgacag gtttatggca 180 gatcaaggct atacaagatg ccactctgat cattgtgttt attttagaaa attggatgga 240 ggtggctata acatcttact gctctatgtg gacgatatgg atcc 284 // ID Copia-51_PIT-LTR repbase; DNA; PLN; 210 BP. XX AC AATU01007073; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-51_PIT_; KW Copia-51_PIT-I; Copia-51_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-210 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01007073; Positions 628 419. XX SQ Sequence 210 BP; 71 A; 43 C; 44 G; 52 T; 0 other; tgttaggatg tcagtcacta aattgtgtac aacacacaaa ggcaacttgc tccagaatgt 60 tggtcaacga atgatccaga gcagttgaag gttctagaac gtaggaagct tagcactagg 120 agtaagtttg agctacagaa gaattctcac tttccaaatt acacagctga agacaaaact 180 acatcgagta acgggtccta cctactttca 210 // ID Gypsy-30_PSo-LTR repbase; DNA; PLN; 256 BP. XX AC AAQY01000528; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_PSo_; KW Gypsy-30_PSo-I; Gypsy-30_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-256 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000528; Positions 36678 36423. XX SQ Sequence 256 BP; 74 A; 79 C; 55 G; 48 T; 0 other; tgtaatgatc tgcacgtgca agagcagaac ccaaccgcat catcagttga gtccgcacgc 60 agagagccca agtcgtcgtc tgcatactca ccggttgcgc aagctcctac tccggcacgc 120 ctcagccaac cacttcatgt ttaggaccga gcgccatgag ggcgccctcg ggtagatgga 180 tagcagcaaa cagacaaaga catcaattca gtttccattt tactcgcaac acaacaagta 240 caaccagaac cttaca 256 // ID Gypsy-10_ES-I repbase; DNA; PLN; 10242 BP. XX AC CABU01000590; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_ES_; KW Gypsy-10_ES-LTR; Gypsy-10_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-10242 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000590; Positions 67424 57183. XX CC Positions [8585-9094] - Integrase core CC 'GTTG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1965..4154 FT /product="Gypsy-10_ES-I_2p" FT /translation="MCEDRRGISWMMSRTLIKNINNNIMFFFLHVFRMSSF FT SGNTPDSGGASSTAPPPVDSSTGSTNTGGPSAAIQVTPLPPAATNASDGQQ FT PPPPPPRIPSVPLQDPAQPQGLFNMYTNRQDSPFKARLNGPSVPINTSTFP FT HTMSQGTSSHTQMVSGGHAFAPPPQSGSYMHPIQSQDHAMNRMPFSGASMV FT DPGYNRKSARQSMERIIKSMKPRPGDETAFVGVSTGESHKLSSHNDAVAFV FT DELSRKMQVEDGGIWAFPVDQHCTDGYTRPVADALTSLRVECLSKLIPLGL FT ATRSMMIPGTLINTYLITGGRLMVPFEQVTITDWTRLLVAELAATPVARQA FT AVQALSAIKLQKNEAWASASARLVLHYRAANVDHYKPYSSEYQLHWSFMPD FT DALIQLMDRTRALFLPVQVDFMSLESHMVSTVRHIKDYLSSMPIDVTNPLS FT QAMMYRGETVKHSHTQFVSDLTNRGSTFYSQDERIRRQRNSSLAANTDLIS FT HKRLLDNDHDTPSKKKPLTKTALLGALRDLLSQEQKGGGDQQHEDDSNSDV FT VELDTVDTFTTLLAAFANRPASVPGRTGTPFTRGGEARSQTARPPSLPVEQ FT APRIAVNRSRPTSSSGKQRRVVDPTVSAPNEEEEELPLPSEDDEVIFKALK FT ARKICFYHARGLNCPHQKNRRGCRYSHDTSIVPLGYYAKEQVFAVQASADA FT CTDMQRAYGADYADSDTSSTQLDTPERNSS" FT CDS 4229..10030 FT /product="Gypsy-10_ES-I_1p" FT /translation="MMAAVSAGTKQVWVKAVVWHPTKVNLRMTIVVLLDTG FT AGGGNYASAAFIKSVETTARNGQDIVNKKGRGLLKAANPSNSQVPPMKILG FT STDLPLVFPPEDQVHIVTVRVVDKLPYGLIIGAAFFRQQESILSFTDEGGF FT KPNPGSRWIPFLSHAKLIAQEYRQKRRKGWRAKPRKFKFRDGFEVRDLANE FT TQFAAVKPSGEEDEPHYLKNPTEIPVIGNAAWEDDGTLQWVLYNGDDILVE FT GFVSVQINTFVKGPQPQDRQLVLISPLPAYDLELGVGLGTARGVQWWYPYT FT PIRSKIVNVTNAPIKLQKGRAIATVYAMNATDVERMSLLEATRLEVSRVHI FT PVSKGSAVDESAEVDSSLKQVDLSEANMGQLTPRIKAELMSLLQDYRDKGL FT FALDPKKVKPCKGDPMELPLIDETGTPFASKPRKWSPEEVTMIQTGVDKLQ FT KAGVIRRSNSPWAASLVLVRKKDGTLRMCQDYRVLNQRLVSNSGSMGDITT FT IYSDMGRVGCTTSIDLASGFNQIAIAEKDKYKTAFHDAHGQLWEFNQPGFG FT LKVLPACFASLVSKALGSLKGRGVRNWLDDILIYTDTIEEHLPLLRSVLEA FT LSKAGLSLNLAKCKWCCSQQEFLGLIIDRLGLRPSPSKIEAIQGLKPASNV FT EELRALIGMAGFLRRFVPKFSEIVAPLTDILRNDSRFASKRGRKLAIPWGP FT AQDEALAQLIHCLSSPPILVLPNWHERFVLYTDASEVGGGAALSQIQDSIE FT RVIAFASHRWTRTDSRRSPTEREAAAVLWAVEHFRHYLWGRRFTLVTDCSA FT LTWLFKSQHLSPKLYRWALRLMEYDTDVQWREGRSHHLPDALSRLPRFDMP FT TKDIDAHFPDDSSTKLSFRGPQGPVLDGILLKDLGVEDISYQDGSVNDQSL FT LDTTTIAALLETDMIDAQLLDESYQAPPHLFEYQPVAVVLCCGGGGNILAA FT EGILDVKVAIEADWRGLECARFNPGDGRPRLLRSFPGEPLCIQLLQEVHPE FT VVVCNVEKGCDMNQVRLIMDTLLRTTAEIIVIECAGPFMASRTWTQEIYPI FT ASQAYYVESVDLRAIQVNIPSGRRRTYISLVKRGRFPRSRERLKAWKKIVE FT RGGGGATPSLGEFLNKSGTYFLERKKGERHIFSFGEPTLAISRGHIMGTIP FT LPEDYQAHKADSGDIKEAVELELEDFKQILTSKRDFVIPRALSRGAAANIL FT SNYSLPPNVREVLLGLKFQGFFRELENSLDYITEGLAALEVTPAVTRRATR FT RTRVVESVQHAPEFVQSSPAVEEEKGETTTQEPVSSPIFPEPTSQPRPAPP FT TISPPLNTVECKSSLVSETLRLLKDVEFILNQQRADPFLKSQLSPEGTAIG FT DFITDDEGILWHYSKGAEPTLAIPRSLVSRVMSLIHTTYGHPGVARTTLLV FT MAKFSWATLKRDVREYVLSCGCRRRKRAMSRKVYMLPARFLNPWEVLEMDI FT QDLHQVSAAGNRYLLVVVDRASKFIFGYPLPSKEALEVSKKLLELMLTIGV FT PVSILSDAGGGFTATVVNHLCKWLNVTLDHGPADFSRSQGAAERMGGWFQE FT VLSILCQSWPLRWDHYVLPACWIQRVTPDPTLPGNPTPFSILFGRTPRTPL FT DSMTRHIDGTEFRGGMDSYVAEKHQSFVEVRNALEKRQAQKNKQRGTANAA FT IQRASAGNRVKEGNLVMVLEADSSLSSQGLHPKLIQDHYTAPWIVTEVTRL FT GQSIRVRLNGRRIRRRVVSGASVKLFHLRPKELRHDFEDEFAHWAWGAELG FT LPDVSVTACPLFTLLDRRVLWKNDRVWCWEYRGRYQDGRESEWINEEEAYN FT SFTSLQLDVFHALWEEYHDDTCRPRPPEYPSKEDRDAASREQALKDFPVGT FT KVRQAFTDGGGQVSEQTGMVYDFREPYWKVRYPDGDWEELSRREVNRGKTK FT ADLYKASSSQ" XX SQ Sequence 10242 BP; 2712 A; 2175 C; 2724 G; 2631 T; 0 other; tggtgaggcc gcggagaatg cgtagcacat gatgacccgg tgctggtggt acaaaaatca 60 gccatcggct cggtgatttt atgtattgag ggatcgaacg cgcgcttttt gggagattgg 120 atctaactcc agtgagtgat ggcgcgactt tctagggggt caaaagcagg gcagcttata 180 tcagtgggat aacgcggact gtcaggagga ggaagagaag agagcctact agagtcggtt 240 ccgacagcgg cggatacaaa aatagtgccg gaagacaaca aaaaacaatt tcgtgttata 300 ccgggcagct ttccatggat catcaatcat cagctatcgt tgaaagcgag caggttacag 360 gtagccaagg tcaactgacc aaactgtacg ggtaacgagg tagtgatgta tcgtcgagaa 420 gacagaacga gtgacatata ggaaggaagt gtctagctga acacaagata cacaaacatt 480 tcaccgccaa aaactccacc agaaaaatgt tcggtagatt tattgtgggg agcgctgaaa 540 atgaaaatac atattgaata acatggttgt acaagcatcg tgaacgacat tggtgaacag 600 ctcttcttac cggcttccag gtagggcgat ctggccccga atgacaaata aggtagctgt 660 gggttagtac aagcatgatt acagtaggac tgaagttaac ttttactacg aagtagccgt 720 tgaagtaaca cacgctaggt tacagccgtt gagaattcga tacacacaca atccaagata 780 caagaaattt tttcggtcgg atagatatct tttttctccg gtgggttgaa atggcgccgt 840 tcatgctgac aagagcggtg gaccgtacgg ctcatacagc gatatcatgg ggatgagtgt 900 gagtaaaatc tcaggccgtt gggattaggc tgagtattca cgttggacga tatgagcaaa 960 tggcatcgtt ggacgggtaa ttgtaccagt aattgcccgg gaatgcccgg gaatctgtgg 1020 accttcaact gatagtacac catcatgtta actgctggtt ttaccttgga tcgcacgcga 1080 aggctgaggt cactgcttcg atgcttagtg tgatggtggc gagtgggcat cgccgtacgc 1140 tggtctgtag tcgcattgac cacatatcgc tgtaatgtcg gtgatgtggg agaaacttga 1200 aaagaaaaat actctgtgtt tcatctggct ggcggggtgc gcagcttttt gatgtggcgc 1260 atgcaaggta agtacacaca cgaacttgac gaaaacactt tgtatcctcg cgctatatct 1320 atgttttttt tatatttaca gctctgtagc ggtcgtgatg ccgtcccaag atggtcccag 1380 cttgctcgat cttgaactcc agctacacca agatactaca gtctctccag acgatccggc 1440 actcgagtcg gatcatgacg atgatcaccc tgttgaggcg gaccatttct tcaatgacat 1500 gccagatctt cagattgtac aagagcacgg attgtcggaa actctattgt tgccgagccc 1560 actgtctttg ccgtcccttg agatagtttc gagcacgtcg tcagtagaag gtttttctcc 1620 gtcggtagct gcagagagcc cctctatgtt gctccctcaa gggaacccac aggcgacagt 1680 tgagcaacag gaagcatttg aagcattgta ctggaggttt gtggactgtc tgtcgggggt 1740 tgacaatatt gagaaattta ttcctttgtt ggaagaatct tgggaggatt gtccgtcgct 1800 agctgtgacg tggccagaag aatttgatta gggttcgcct gctgtagtag taacacagga 1860 aaaattggaa catcggggta gtaagtagaa aagggatact attttttttt gtgcttgggt 1920 tggttcacga tggcattatt atcgagttac ggtaacaaca tgtcatgtgc gaagacagac 1980 gtggaataag ttggatgatg agtagaacac tcattaaaaa tatcaataat aacatcatgt 2040 tttttttttt gcacgtgttt aggatgtcca gtttctctgg caatactcct gattcggggg 2100 gtgcatcatc tacggcacca cctccggtcg actcatcaac gggttcgacg aacactggtg 2160 gaccttctgc cgccatccag gtgacgccgc taccgccagc ggccaccaac gcgagtgatg 2220 gccaacagcc gcctcctccg cccccgagga ttccatcagt tcctctccaa gatccagccc 2280 aaccacaagg gctgttcaac atgtatacga accgtcaaga ttcaccattc aaagcgcgcc 2340 tgaatggtcc ttcagtacca atcaacactt ccacgtttcc acacacgatg tctcaaggaa 2400 cgtcgtcgca tactcagatg gtaagtggag gacatgcttt cgcgcctcca cctcagtctg 2460 gttcatacat gcacccgata cagtcacaag atcatgccat gaataggatg ccgtttagcg 2520 gtgcttcgat ggttgatccc ggttacaatc gaaaatcggc tagacagtct atggaaagga 2580 ttattaaaag catgaaaccg agaccgggtg atgaaacagc ttttgtcggt gtgtctacgg 2640 gagagtcgca caaactttcg tcacacaacg atgcggtagc gtttgtggat gagttgtcga 2700 ggaaaatgca ggtggaggat ggaggaatat gggcatttcc ggttgatcaa cattgtacgg 2760 atggatacac gcgtccggtg gcagatgcat tgacatcgct gagagtggag tgtttgagca 2820 agcttatacc tttaggctta gctaccaggt cgatgatgat tccgggtacg ttgattaaca 2880 catacttgat cacaggaggc agactcatgg ttccttttga gcaagtaaca attacggact 2940 ggacacgttt actggtagca gaactggccg ccacacccgt tgcacggcag gcagctgttc 3000 aggctttatc ggctatcaaa ctgcagaaaa atgaagcttg ggcctctgct tcagcacggc 3060 tagtactaca ctatcgggcg gcgaatgttg atcactacaa accgtattcg tctgaatacc 3120 aactgcactg gagtttcatg ccggacgatg ctttaattca actaatggac agaactcgag 3180 ccctttttct gccggtacaa gttgatttta tgtcgttaga atcacacatg gtgtctaccg 3240 tccgtcacat caaggattat ttgtcctcga tgccgattga tgtcaccaat ccactgtcgc 3300 aggcaatgat gtatcggggg gaaactgtta aacatagtca cacgcagttt gtcagcgacc 3360 ttacaaacag aggttccacc ttttactcac aggacgagcg catccgtcgt cagcggaatt 3420 cttcgttggc agcgaatacg gatttgatta gccacaagag gttgttggac aatgatcatg 3480 atacaccctc gaagaagaaa cctttgacga aaacagcact tcttggagcg cttcgagacc 3540 ttctttctca agagcaaaag gggggtggtg accaacagca cgaagatgat tccaattcgg 3600 atgtggtgga gcttgataca gttgatacat ttaccacgtt gctagctgcg tttgctaatc 3660 gtccggcttc agtgcctgga agaacgggta ctcccttcac gcgaggagga gaggcacggt 3720 cgcagactgc tcggcctccg tctctccccg tcgaacaagc accacgcata gcggtcaata 3780 ggtcgcgtcc tacttcatca agcggtaaac agaggcgtgt agtggacccg actgtatcgg 3840 ctccgaatga agaggaagag gaactccctc tcccttccga agacgacgaa gttattttca 3900 aagctttaaa agctagaaag atctgctttt accacgcacg aggcctcaac tgcccgcatc 3960 aaaaaaaccg acggggatgc cgatactcgc atgacacttc aatcgttccg ttaggatatt 4020 acgctaagga acaagtattc gcggttcagg cgtccgcgga tgcttgtact gacatgcaac 4080 gggcgtatgg agcagattac gcagactcag acactagttc gactcaactg gatactccag 4140 aacggaactc atcttgaaga tgcgccctgg ggactccttc cccggggaac acagcgtgta 4200 atcggaaaga gacaaaaaag aggtagacat gatggcagca gtgagcgcag gaaccaaaca 4260 agtgtgggta aaagcagtcg tgtggcaccc cacaaaagtt aatcttcgaa tgacgattgt 4320 ggtgctgtta gacactggtg caggcggagg taattatgcg tcagcagcct ttatcaaatc 4380 cgtggaaacg actgctcgta atggacaaga tattgtgaat aaaaaagggc gcggattgtt 4440 gaaagcagcc aatccgtcaa acagtcaggt gccgccgatg aaaattttgg gttctactga 4500 tttgccgctg gtctttcctc cggaggacca ggttcatatt gtcacggtca gagtggtcga 4560 taagctacct tatggtttga ttattggagc ggctttcttc cgacaacagg aaagcatcct 4620 tagtttcact gatgagggtg gatttaagcc taatcccggg tcacgatgga ttccattttt 4680 gtcacatgct aaattaatag cacaggagta tcggcaaaaa cggcggaagg gctggcgagc 4740 aaaacctcgt aagttcaagt ttcgtgatgg ttttgaagta cgggacctag ccaatgaaac 4800 ccagtttgcg gcagtaaaac catctgggga agaagacgaa ccacattatc ttaaaaaccc 4860 tactgagata ccggtgattg gcaacgctgc ttgggaagat gatggaacct tacaatgggt 4920 attgtacaat ggagacgata tcttagtgga aggtttcgtc agcgttcaaa ttaacacatt 4980 tgtcaaaggt ccacaaccac aagatcgaca attggtgctg atttctccgc ttcctgcata 5040 tgatctcgaa ttgggggtgg gtttgggtac agcacgaggg gttcagtggt ggtaccctta 5100 cactccaata cgaagtaaga tagtcaacgt tacaaatgcg ccgataaagc ttcagaaagg 5160 tagggctata gcgacagttt atgccatgaa tgcaacagat gtggaacgta tgtctttgct 5220 agaggcgacg cggttggagg tctcgcgtgt acatattcct gtaagtaaag ggtctgcagt 5280 ggatgagtca gctgaggtgg attcttctct gaagcaggtt gacttatctg aagcaaacat 5340 gggccaactg acccctcgca taaaagctga gctcatgtct ttactacaag attatcgaga 5400 caagggtttg tttgctttag acccaaagaa agtcaaaccg tgtaagggag accccatgga 5460 actgcctctg atcgatgaaa caggtacccc atttgcatcc aagccacgaa aatggtcacc 5520 tgaggaggtc acgatgattc aaactggagt agacaagttg caaaaggcag gagtcattcg 5580 gcggtctaac tcaccatggg cggcaagctt ggttctggta cgaaaaaaag acgggacgtt 5640 gcgcatgtgc caagattacc gtgttctcaa tcaacgtttg gtgtccaaca gcggttctat 5700 gggagatatt acaaccatat acagcgacat gggacgagtt ggttgtacaa catcgattga 5760 ccttgcttca ggattcaacc aaatcgcgat tgcagaaaag gacaaatata aaaccgcttt 5820 tcatgatgca catggccaat tgtgggaatt caatcaacca gggtttgggt tgaaagtgtt 5880 gccagcatgt ttcgcttctt tggtatcaaa ggctctcgga tctttgaaag ggagaggggt 5940 gcgaaattgg ctcgacgaca ttttgattta cacagacacg attgaagaac atcttccgct 6000 actgagatcg gttttggaag cgttgtcaaa ggcgggtctt tccctgaact tagcaaaatg 6060 caagtggtgt tgttctcaac aggagttttt gggactgatt atagatcgct tgggattgcg 6120 gccttcgccc tctaagattg aagccattca aggtttgaaa ccagcatcta atgttgaaga 6180 gttacgagct ttgattggga tggccgggtt ccttcgaagg tttgttccta aatttagcga 6240 aattgtggct ccactcactg atattttgcg aaatgactct cggtttgcgt cgaagcgagg 6300 acgtaaatta gctattccgt ggggaccagc ccaagatgaa gccctcgcac agctcattca 6360 ctgtctgtct tcaccaccca ttctggttct accgaattgg catgagaggt ttgtgttgta 6420 taccgatgct tccgaagttg ggggtggcgc tgccttatcc caaattcaag atagtattga 6480 acgcgtcatc gcttttgcta gtcatcggtg gactcggacg gattcccgtc gatccccaac 6540 agaaagagaa gcggcagctg tgttatgggc agttgaacat tttcgacact atttatgggg 6600 tcgaagattt accttagtca ctgattgttc agcactaaca tggttattca aaagccagca 6660 cttatcgcca aaactctatc gatgggctct tcgtttgatg gagtacgaca cggatgttca 6720 gtggcgagaa gggcggagtc atcatttgcc tgatgcgctg tctcgattac cacgttttga 6780 catgccgact aaggatattg atgcccattt cccggatgat tcatctacga aactttcgtt 6840 caggggtcct cagggtccgg ttttggatgg cattttattg aaggatttag gggtggaaga 6900 catctcgtat caggacggat cagtaaacga tcagtcgttg ttggatacaa caactattgc 6960 ggcgctgttg gagacagata tgatagatgc tcagttgctc gatgagtcat atcaagcacc 7020 gccacatctc tttgaatatc aacctgtcgc ggtcgtgctc tgctgcgggg ggggaggtaa 7080 tatcctagcc gcagaaggca ttctagacgt gaaggttgct atagaagcag actggagagg 7140 cttagagtgt gcaagattta atccaggtga tggacgtcct agattgttac gatcatttcc 7200 aggagaaccg ctgtgcattc aacttttgca agaggttcac ccggaggtag ttgtatgcaa 7260 cgtggaaaaa ggatgtgata tgaatcaagt caggttaatc atggacacgt tattgaggac 7320 gacagctgag ataatagtaa ttgaatgcgc aggtccgttt atggcttcta gaacatggac 7380 acaagaaata tacccgattg cgtctcaagc atactatgtg gagtcagtgg atttgagagc 7440 tattcaagta aatattccat cgggacggag aagaacttac atttcgttgg ttaagagagg 7500 aaggtttcct agatcaagag aaaggttgaa ggcttggaaa aaaatcgtcg agagaggtgg 7560 gggtggagcg actccttcgt tgggtgagtt cttgaacaaa tctggaactt actttttaga 7620 gaggaaaaaa ggagaacgcc acattttctc ttttggggaa cccaccctgg caatctcaag 7680 gggtcatata atggggacga tacctctgcc tgaagattat caagctcata aagcggattc 7740 tggtgatatc aaagaagcgg ttgagttaga gttggaggac tttaagcaga ttcttacttc 7800 gaaacgtgat tttgttatcc cgagagctct tagccgggga gcagccgcta atatattgtc 7860 taactattcc cttccaccta atgtgaggga ggttctcttg ggcttgaaat ttcaagggtt 7920 cttccgggaa cttgagaact cgttagatta tattaccgaa gggttggccg ctttagaagt 7980 cacccctgcc gtaacccgga gagctactag gagaacgaga gtggtcgaga gtgttcaaca 8040 tgcgcctgag tttgttcaat cttcaccagc agtagaggag gagaaggggg agactaccac 8100 ccaagaacct gtatcttctc caatctttcc ggaacccacg tctcaaccga gacctgcacc 8160 tcccacgatt tcccctccgt tgaatacggt tgaatgcaaa tcttctttgg taagcgagac 8220 cctgcggtta cttaaggatg ttgagttcat cttgaatcaa caacgggctg atcctttctt 8280 gaagtcacag ctatcacctg aaggaacagc cattggagac tttatcactg acgatgaggg 8340 catattatgg cattattcta aaggggcgga acctacgcta gctattcctc gttcgttagt 8400 atcgagagtt atgtcgttga tccacactac ttatggacat ccgggggtag cacgaactac 8460 tttgcttgtc atggcgaaat ttagttgggc gacattaaaa cgggatgttc gtgagtatgt 8520 cctatcttgt ggatgtcgcc ggcggaaaag agccatgagc aggaaggtat acatgcttcc 8580 cgctaggttt ttgaatcctt gggaagtgtt ggagatggac attcaggatc ttcatcaggt 8640 atcggcggca ggaaatcggt atttgctggt ggttgtagac agagctagta aatttatttt 8700 cggttatcct ttaccttcga aggaggcgct agaggtgagc aagaaactgt tggagttaat 8760 gctgactatt ggcgtacctg tttcgatcct aagtgatgct ggggggggat ttacggctac 8820 ggtggtcaat catttatgca aatggttaaa tgttacgctt gatcatggtc ctgcagattt 8880 ctcgcgaagt caaggagcag cagaacggat ggggggatgg tttcaagaag ttttgtctat 8940 tctttgccaa tcttggcccc ttcgatggga tcattatgtt ttgcccgctt gttggatcca 9000 gagggtgacc ccagatccta cgttacctgg gaacccaacc cctttcagta ttttgtttgg 9060 acgcactccc cgtacacctt tagattcgat gactcgacac attgatggaa ccgaatttag 9120 aggtggtatg gatagttacg tcgcggagaa acatcaatct tttgtggagg ttcgaaatgc 9180 cttagaaaag cgacaagctc aaaaaaacaa acaaagaggg accgccaatg cggccatcca 9240 acgagcctcg gctggtaatc gggttaaaga agggaattta gtgatggttt tggaagctga 9300 cagttctttg agttcgcaag gcctgcatcc taaactgatc caggatcatt atactgcacc 9360 ttggatagta accgaagtaa ctaggttagg acaaagcatt agagttcgac tgaatgggcg 9420 ccgaatccga agaagagtgg tttctggagc aagtgttaag ttatttcacc tgcgccctaa 9480 agaattgcgc cacgattttg aagatgagtt tgctcattgg gcttggggcg cggagttggg 9540 tttacccgat gtgtctgtga ctgcctgccc tctcttcacc ttgttagatc gccgggtctt 9600 atggaagaac gatcgggttt ggtgttggga gtatcgtggc cggtatcagg acggtcgtga 9660 gtcagagtgg attaatgagg aagaggctta caatagcttt acctctcttc agttagacgt 9720 atttcacgca ctctgggaag aatatcatga tgacacgtgt cgacctagac ctcctgaata 9780 cccgagcaaa gaagaccgag atgcagcctc tcgtgaacaa gcactaaagg atttcccggt 9840 gggtaccaag gtaagacagg cgttcactga tggaggaggg caagttagtg agcagacggg 9900 aatggtttat gactttaggg aaccgtattg gaaagtgcga tatccggacg gagattggga 9960 ggagcttagt cgccgcgagg taaatagagg gaagacgaag gccgacctct acaaggcgtc 10020 atcttctcaa tgagggtcta cgagcttgat gtcacgactc aagtgatgtt aaggaccctt 10080 tcaggagcag ctggacaaaa aaattgaaga taagttcaag agcagctgga tggaatcaag 10140 agcagctttg gaaggtcgag agcagcttgg aggtgtttga ttctgggcgt ctagccggca 10200 ttccgttagc atcttcgctt aatacgcgca gtgctggggg ga 10242 // ID Copia-19_PIT-I repbase; DNA; PLN; 4716 BP. XX AC AATU01002448; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-19_PIT_; KW Copia-19_PIT-LTR; Copia-19_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4716 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002448; Positions 58313 63028. XX CC Positions [1927-2436] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 49..3096 FT /product="Copia-19_PIT-I_1p" FT /translation="MSEYKASTTSDNASTKSTITSATPTTQQQTAVVSVKQ FT PTVTLADASRVGVPMAGVVGQAGASPGLLGVQQPAVPVVQRSKPFGSSKPP FT KFSDTFEVYQMSLKLYLEQRDSWSVVTGEEMRHAFDPVLQRQFDDRNRLAM FT ETIIRGVKGADAQKVCICSTAKEMWDTLTAEKTQRDFSYAVHLKRELYTHS FT YAPGQKMAEYIQEMNMLRQRLQHMGPSFVIDDTSMSQLMLMGVCAVHREIV FT TQFDFSYRQGNPPSLQQVKNALLSRDEMEKMAADTAVNCGASNGGPQVAMH FT MGKPNGQHYWPNEGPGPGPGPRGQMQTTGAGKRRAIRCYHCKKVGHMRKDC FT WHYKNKQSKAQAGKGKATETKKPSNSGGGNSSGLASKPVGSMGFMRFTADA FT GREDDSSSSSSSSEGELPFVGMAIQEGRHELSGDWLLDSGTSSHVCNQKEQ FT FTSMKKSKASFKVWDGGITRSKKCGKVLLNALNVLSGGETTLELDKVVFSP FT TGPVNLLSLGLMVNKGWELSTSAPGVLPKKQFLTRNGVCVEFIYHGTHYWL FT NNGSFGDNSAVIMATVNADDSPLMKWHERLAHLNEAALKFMVKNDVVRGLD FT IPAEQLKTKLKCLSCMSTKRKRMSYGDVTEKRTVQNFERLTSDVCDMGKYG FT PGIGAMRYFQLIHDEGSRYKWCYPLVHKSEASGNTQRLMTELLAQGKRIIT FT FTSDGGGEYVNSVLTGFLESKGITFVPTHPYTPEENCLVEKLNGVLVNKMR FT AVMHAANLPMILWPEVLRYVVEVDNLSPTKALQGLTPTEKLSGLKPDVAQL FT KVCGCVGYVFVPKETRKNKLSAKAEPGLFLGFARMGHGYRLLHLRSGKVIE FT ARDVKFREDVTVERTYINALLKGRQHYFPQIPFVPLPVEYVANEAVRAGAH FT EAVREAVNETARIDDQPVEQANTEQHDLAAEAAGSVGAASASNDRESQEND FT DVDDKMPTADQLRPWSERNPDFLNGSQPRRSSKRKRGWRRSERIRKENVRL FT KDYVMASWKH" FT CDS 3207..4694 FT /product="Copia-19_PIT-I_2p" FT /translation="MVPGDWSIDPKGSHNILKTTWVLRAKLNEKGLVDRLK FT SRLAVKGCGQKYGVDYLDTYSPVVRIETVRMLLILAFLLGYECYHVDFVTA FT FLNGVLKGVKIYMEQPAYFNDGSGRVCELLKGLYGLKQASRLWYQTLHEYL FT EQIGFKQCTFDVGLYHRWQGGRAVYVTVYVDDLLIAGSKEDIEHVIGELSE FT KFALKNLGRVKHLLAMEVKYVPGELLCISQTAYIDRVLERFGMSGARSAAS FT PQMQNERMPPIEKNQDKTNDPKFPFRELVGALQYLVACTRPDLANVVRTLS FT RYSSSYTEENYECAKRVLRYLRATRTYGLVYKRQANVLPLTIDAYCDADHA FT NCPDTSRSITGYILRLNGCMFMYKSKQQSKVTTDTCSSELLAASMCVEDLM FT WARKLLKEIRSDKLPCSTLYMDNQSTLTVVTEPGNYQRMKRFAKTSRKIAE FT FVEKEKIAVQYISSEENIADIFTKALGPQRFQGLRQKLNVENVEQDEAQHQ FT " XX SQ Sequence 4716 BP; 1276 A; 1014 C; 1397 G; 1029 T; 0 other; ggttatctgc taggttatga gcccaaaggc tggttcgtgg acaacgtaat gagtgaatat 60 aaggcttcta cgacgagcga taatgcaagt acgaagagta cgataactag tgcgactccg 120 acgacccaac agcaaacagc ggtagtatcg gtgaagcaac ctactgttac gctggctgat 180 gcaagtcgcg ttggggtacc aatggctgga gtagtgggac aggctggagc gtcgccagga 240 ctacttggtg tgcagcaacc ggcggttcct gtagttcaaa ggtcaaaacc atttggcagc 300 agcaagccac cgaagtttag cgataccttc gaggtatacc agatgagttt aaagctctat 360 cttgagcagc gagactcatg gagtgtggtg accggtgaag aaatgcgtca tgcatttgat 420 ccggtgttgc agcgtcaatt tgatgatcga aatcgactgg ccatggagac tataatccga 480 ggcgtaaaag gtgctgatgc ccaaaaagtg tgcatttgca gcacggcgaa ggagatgtgg 540 gacacattga ctgcggagaa aacccagcga gacttctcgt atgcagtgca tttgaagcgt 600 gagctgtaca ctcactcgta cgccccgggc caaaagatgg cggaatacat ccaagagatg 660 aacatgttgc ggcagcgttt gcagcacatg gggcccagct tcgtgataga cgatacgtcg 720 atgtctcagt tgatgctgat gggagtgtgt gcagtgcatc gcgagatagt gacccagttc 780 gacttctcat accgacaagg aaacccacca tcgttgcagc aagtgaaaaa cgcactgctg 840 tcgcgcgatg agatggagaa gatggcggct gacacggccg tgaactgtgg tgcaagcaat 900 ggcggcccgc aggtggcaat gcatatgggg aagcctaacg ggcagcatta ttggccgaat 960 gaaggtccag gccccggccc tggtcctcga gggcagatgc agaccaccgg tgcaggcaaa 1020 cgacgtgcca ttcgctgcta ccattgtaag aaagttggac acatgcggaa agactgttgg 1080 cactacaaaa acaagcaaag caaggcccaa gctggcaaag gcaaggccac cgagacgaag 1140 aagccgagca acagcggtgg aggtaattcc tcgggtttgg ccagtaagcc agtgggttct 1200 atgggcttca tgcggttcac tgcggatgct ggtcgtgagg acgacagcag cagtagtagt 1260 agcagttctg aaggcgaact tccatttgtg ggtatggcaa ttcaagaagg aagacatgag 1320 cttagtggcg attggctgct ggactcggga acgtcttcgc atgtgtgcaa ccaaaaagaa 1380 caattcacaa gcatgaagaa atccaaggct tcgttcaaag tatgggacgg cggcatcacg 1440 cgtagtaaaa agtgcggtaa ggtgctgctg aacgcattga acgtgctgag tggtggtgaa 1500 accacgctgg aactggataa agtggtgttt tcacccactg gacctgtgaa tttgctcagt 1560 cttggactga tggtaaacaa aggctgggag ctgtcaacca gtgcgcctgg agtgctaccg 1620 aagaagcaat ttttgactcg aaatggagtc tgtgtggagt tcatttatca tgggactcac 1680 tactggttaa acaatggtag ctttggcgat aacagtgctg tgattatggc gactgtaaat 1740 gcggatgaca gtccgttaat gaagtggcac gaacgtctgg ctcacctgaa cgaggcagct 1800 ttgaagttca tggtgaagaa cgacgtggtg agaggcttgg acattcctgc cgagcagctg 1860 aagaccaagt taaagtgtct tagctgcatg tcgacaaagc gaaaacgcat gtcgtatggg 1920 gatgtcaccg agaaaagaac tgttcaaaac tttgagcggt tgacctcaga tgtatgtgat 1980 atggggaagt acggaccagg aattggtgca atgcggtact tccagctcat tcatgatgag 2040 ggctcgcgat acaagtggtg ctacccgctc gtacacaaga gtgaagcttc tggcaacacg 2100 caacggctga tgactgagct actggctcaa ggcaaaagga taataacgtt cacgagtgac 2160 ggaggggggg aatacgtaaa cagtgtgctg acggggttcc tagagagcaa gggaatcacc 2220 ttcgtcccca ctcatccgta cacaccggaa gaaaattgct tagttgaaaa actaaatggt 2280 gttctcgtga acaagatgcg tgctgtcatg cacgcggcca atttgccgat gatattgtgg 2340 ccggaggttt tgcgctatgt ggtggaggtg gacaacctga gtccgacaaa agctttgcaa 2400 gggttaaccc cgactgaaaa gctgtcagga ttaaaacctg acgttgcgca actaaaggtg 2460 tgcggctgtg tgggatacgt atttgttccg aaggagacca ggaagaacaa gctttcagca 2520 aaggctgaac cgggactgtt tcttggtttt gcaaggatgg gtcatggcta ccgactgctt 2580 catctgcgaa gtgggaaagt gattgaagcc cgcgacgtca agttccgcga ggacgtgacg 2640 gtcgagcgca catacattaa cgcgctgttg aagggccgac agcactattt cccgcagata 2700 ccatttgttc cactcccagt ggagtacgtt gctaacgaag ccgttcgggc cggagctcat 2760 gaagcagtaa gagaggctgt taatgaaact gcacggatag atgatcagcc ggttgagcaa 2820 gcgaacaccg agcagcatga cttagcagca gaggctgcag gttcggtggg agcagcaagt 2880 gcatcgaatg acagagagtc acaagagaac gatgatgtag atgacaaaat gccaacggcg 2940 gatcaacttc gaccttggtc ggaacgcaat ccggacttcc taaatggatc tcaaccgcgg 3000 cgcagctcga agcgcaagcg tggatggcga cgatcagagc gtatccgaaa agaaaatgtg 3060 cggttgaaag actatgtgat ggcttcctgg aagcactaga gactttcgca gggaaatcct 3120 gcttctgttg aagaagctct agcgtctcca caacgtgaaa agttggatca aagcgatgga 3180 actcgagatg gaagcacaca aagtgaatgg tacctggaga ctggtcgata gaccccaaag 3240 gctcgcacaa cattttgaaa accacgtggg tgttgagagc caagctcaac gaaaaggggc 3300 ttgtggacag actcaagtct cgtttagcag tgaaaggctg cggacagaag tacggtgttg 3360 attacttgga tacgtactct cctgtcgttc gaattgagac tgtgcggatg ttattgatcc 3420 tggcatttct attgggttat gaatgctacc atgttgactt cgttacggct ttccttaatg 3480 gtgtgctgaa aggagtgaaa atatacatgg agcagcccgc atacttcaat gacggaagcg 3540 gtcgtgtatg tgagttgctg aaaggactct acggcttgaa acaagcttcg cgcttatggt 3600 accagacact gcacgagtac ttggagcaaa ttggcttcaa gcagtgcaca tttgacgtgg 3660 gtttgtacca ccggtggcag ggcggccgcg ctgtgtacgt tacagtatat gttgatgact 3720 tgttgatcgc tggatcaaag gaggacattg agcatgtaat cggtgagctg agcgaaaagt 3780 tcgcgttgaa gaacctcggt cgtgtaaagc acttgttggc tatggaagtt aagtatgtgc 3840 cgggggagtt gctctgcatc tcgcagacag catacattga ccgagtgctc gaacgttttg 3900 gtatgagtgg ggcgcggtct gcggcttccc cgcagatgca gaacgagagg atgccaccga 3960 ttgagaaaaa tcaggacaag accaatgatc caaagtttcc gttccgtgag ttggtgggtg 4020 ctttgcagta tctagtggca tgcacgcggc cggacttggc caacgtagtg cgtacgttgt 4080 ctcgctacag cagctcctac acagaggaga attacgagtg tgcgaagcgc gtactgcgtt 4140 acctacgggc tacgcgaacc tacggcttag tgtataaacg tcaagcgaac gtgctgccgc 4200 tgacaattga tgcttactgc gatgccgacc atgccaactg tccggatacg agtcgatcta 4260 ttacaggata cattctgcgg ttgaacggat gcatgttcat gtacaagagc aagcaacaaa 4320 gcaaagtgac cacggacacg tgcagctcgg agctgcttgc agcaagtatg tgcgtggaag 4380 acttgatgtg ggctcgtaag ttgctgaaag agattcggag tgataagctg ccgtgctcta 4440 cgctctacat ggataatcaa agcacgctca ctgtagtaac agagcctggg aattaccagc 4500 gtatgaagag atttgccaag acaagtcgga aaatcgccga gttcgtggag aaagagaaaa 4560 tcgcggtgca gtatatctcg agcgaagaga acatcgcaga catcttcacg aaggcgttgg 4620 gaccacaaag attccagggt ctccgccaga agctaaacgt tgaaaacgtt gaacaggatg 4680 aggctcagca tcaatgaggt gggagtaaca ggaagc 4716 // ID Copia-27_PIT-I repbase; DNA; PLN; 5017 BP. XX AC AATU01001417; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-27_PIT_; KW Copia-27_PIT-LTR; Copia-27_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5017 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001417; Positions 171161 176177. XX CC Positions [1765-2283] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 19..4980 FT /product="Copia-27_PIT-I_1p" FT /translation="MTKPLKYSSEGVPKNWDGKDWQSYKWALMNVFKEQDL FT KNIVVGDLTLAMLATASAEKQEEFKKKQLKIMRLIGTSVPADVLHQLRDKE FT TGSEMWSELCSLYEGKQNEAIKAYTIRRVENELWSMKLAPGGDANLHLCKM FT FNLKTVLADLNHTVADTTMVDMLLESLPDQLEFEHLKSSIYYGADPSVYTP FT KKVRELILAAKARQKEFRAKRTEKKGSPRGRHGKGSESRKGFHEDKTGDPK FT RVRRCFTCGSEDHLRVDCPEKSKGKEKADDAEKKRKPRSCCTLRQETTGPV FT QMNREWDEGVVAGVTISREIYGIPRELDEAHGVDDVHTDDVRGIGIVSDDD FT AASDGNPVNDHESDSGESHLEDNDQVTQGLNGGWWYLDTASNSHVTGNFAE FT FVSYTADSEQLQQIRGVTSTIASRVAGMGTVAFTTEVNGEQVVSYLDGVLY FT IPDAEYGLFSPGLAYEQGYTLEYDRESRNFHVMRNGRTVAVATQQEATWGF FT QVASPTQRTRVLPEAAARCNHTMAEGVGSLQLWHERLCHICPQYLKTMVDK FT ELVEGMMVTQRQQDTCDACHLGKQKMKSHRKMLDRGLKRPNQIVYADLLIP FT GKNNATQYEAVLVIMDGYSRFVTAHLLRNKDSKVVNKYMQEYVLWAERQAG FT RNANGKTYRVQQIWSDKGGEFFNEEIDAWYRSRGIEHVKVGPKSSQLNLCE FT RTHQSLEDMTRSTMAHSGLPKSLWPEALRNAVYVKNRVYNKGTNGIPYEML FT FRVKPNVHHIRKFGALAYVHVPVTPGRKKLSVHAKIGFVLGYAENVVGCKV FT YFPDEHTAKFVSDLRVAEDVMYRDRYTTEVEDDDLSSLHFTLQDEDQTVLS FT ELSNVPSFELEEGESVDACVDAVQTQEGERTDVHTQVGREMHQVYDQPVHH FT ADSEADGDIHLNGDVQLKVTEDGIETVQVGSDAVESDEHGDVVTESVQHEG FT SQPSEVSKGVSVDTGQAAEGENVHEAAEGVDIADADAISVAGTCGSEVVDH FT KLDESEEQDGNEETTVASVFAEDQSSSDAELESDTGEDTLPEAESDRDVVG FT ISPEVTVTGKRMHRDETPSEEARAELDADKTNVKKTRTGLREVHERRRPAY FT LDDYMVNVTMNSSRVLDKNGRPIRASEIKVPRNRREMIRSKWCDFFMMAEM FT EELAALKKKGVIAEIPADEMPEEASPVNTMWVYDIKTDHQGYVIRFKSRIV FT ALGNYQRPGIDFKETFASVARMSSFRLLLALAAQLGLMVYGGDINTAYLNA FT QLEIQQYLRSIEGYPCKINGYVYIVLKALYGLHQSGREWNSELNNWLMKHG FT YMRSLTEPCLYYRFDGDTIMYVLVYVDDILVATNDEQSKKDLFAQLDKEYG FT IKDQGLLNEYLGVKVEQTTERITIHQGKYAREILSKFGYQNAHAVGNPMEV FT NLRLAPMSDEETGDTSFPYRESIGMLMYLATSTRPDLAFAVGQLSRFVGKP FT SAKHVGSLKRVLRYVAGTLDYGITYTRTQGATREVVLEGYCDSDWANDPEQ FT RKSTTGFVFMLSGGAIAWMSRRQSIIALSTAEAEYVAACEATMEAVAEGNI FT LQEILPDHEVKLRIGVDNQAAHVMATNPTYSRRTRHIELRWHYVREQVVKG FT TIDLHKVKGEANPADTFTKPLNKIRLKAMLELAGVN" XX SQ Sequence 5017 BP; 1404 A; 966 C; 1541 G; 1106 T; 0 other; atagggttct gagcccaaat gacaaagccc ctgaagtact cgagtgaagg agtccctaag 60 aactgggatg gtaaggattg gcagtcgtac aagtgggcgc tgatgaacgt cttcaaggaa 120 caagacctca agaacatcgt agtcggagat ttgaccttag cgatgcttgc tactgcaagt 180 gcagagaagc aagaggagtt caagaagaag cagttgaaga tcatgcgctt gattggtaca 240 tcggtaccgg cagacgtgct gcatcagcta cgtgacaagg agaccggatc ggagatgtgg 300 agtgagctct gcagccttta cgaaggaaag cagaacgaag ccatcaaggc gtacacgatc 360 cgtcgcgtgg agaatgagct ttggagtatg aagctcgcac ctggaggaga cgccaacctc 420 catctttgca aaatgttcaa tctcaagact gtgttggccg acttgaacca tacggttgca 480 gataccacga tggtggatat gctactggag agtttgcctg atcaactgga gtttgagcat 540 ctgaagtctt cgatatacta cggcgcagac ccgagtgtct acacacctaa gaaggttcga 600 gagctgattc ttgcggcgaa ggctcggcag aaagagtttc gagctaagcg cactgagaag 660 aagggtagcc cgcgaggaag acatggcaaa ggcagtgaga gcagaaaagg ctttcacgag 720 gacaagactg gtgaccccaa gagagttaga agatgcttta cttgtggcag tgaagatcac 780 ctacgtgtcg attgtcctga gaagtcgaag gggaaagaga aagctgacga cgcagagaag 840 aagcgtaagc cgcgcagttg ttgtacccta cgacaagaaa ccactggacc agtgcagatg 900 aaccgcgagt gggatgaggg tgttgtggca ggagtcacaa tttctcgtga aatatacggg 960 attcctcggg agctcgatga agcacatgga gtggatgacg tacacactga tgatgtacgt 1020 ggcattggaa tcgtgagcga cgatgacgca gcgagtgatg gaaacccggt gaacgatcat 1080 gagtcagata gtggtgaatc acatctggag gacaatgatc aagtaacaca aggtctcaat 1140 ggcgggtggt ggtatctgga tacggcctcc aactcgcacg tcacggggaa tttcgctgag 1200 ttcgtgtcgt acacggcaga ctcggagcag ttacagcaaa tccgaggagt tacgtctacg 1260 attgcttccc gtgttgctgg aatgggaaca gtggcgttta cgacagaggt taatggagaa 1320 caagtagtga gctatctcga cggagtgttg tacattccgg atgccgagta tggtttgttt 1380 tctcctggat tagcctatga gcagggttat actctggaat atgacagaga atcgagaaat 1440 tttcacgtca tgagaaatgg aaggactgtg gctgtagcaa cgcagcagga ggccacttgg 1500 gggttccaag tagcgagtcc gacccagaga actcgagtgc taccagaagc agcagcaaga 1560 tgtaatcaca ctatggcaga aggtgttggt tcgctgcagc tttggcatga gagactgtgt 1620 catatctgtc cacagtattt gaagactatg gtcgacaagg agctggtgga gggaatgatg 1680 gtgacacaga gacagcaaga tacgtgtgat gcctgtcatc ttggaaagca aaagatgaaa 1740 tcacacagga agatgctgga ccgtggactg aagagaccca accaaatagt gtatgcggat 1800 cttctgatcc cagggaagaa taatgcgact caatatgagg cagtgttggt gatcatggat 1860 ggttattcgc ggtttgtcac tgcgcacctg ctgaggaaca aggacagcaa ggtggtgaac 1920 aagtacatgc aagagtatgt gttgtgggcg gaacggcagg caggccgaaa tgccaacggg 1980 aaaacataca gagtgcagca gatttggagt gacaagggcg gtgaattctt caatgaagaa 2040 attgatgcat ggtatcgttc aagaggaatt gagcatgtga aagtcgggcc gaagagctcg 2100 cagctcaatt tgtgtgaacg aacgcaccaa tcgttggagg acatgactag gtctacgatg 2160 gcacattcgg ggctaccgaa gagcctgtgg cctgaggcac tgagaaatgc agtgtatgtc 2220 aagaatcgtg tgtacaacaa ggggactaat ggcattccgt acgagatgct gttcagagtc 2280 aagccgaatg tacaccacat ccggaagttt ggagcactgg cgtacgtgca cgtaccagtg 2340 actcctggac gcaagaaact gagtgttcat gcgaagattg ggtttgtatt ggggtatgct 2400 gagaatgtag ttggctgcaa agtgtacttc cctgatgagc acacagcaaa gtttgtgtca 2460 gatctgcgtg ttgcagaaga tgttatgtat cgggaccgat acacaacgga agtggaagat 2520 gacgatctct cttcacttca ctttactctt caagatgagg accagaccgt tttgagcgag 2580 ctgagtaatg taccatcttt tgagctcgag gaaggcgaga gtgtggatgc ttgtgtggat 2640 gctgtgcaga cacaggaagg cgagcgtact gacgtacata cgcaggttgg acgagaaatg 2700 caccaagtgt atgatcaacc tgtccaccat gccgatagcg aagcggatgg agatattcat 2760 ttgaatggtg atgttcaact caaggttact gaggacggta ttgagactgt tcaagtaggc 2820 agtgacgccg ttgagagcga tgaacatggt gatgtagtta ctgaaagtgt acaacatgaa 2880 ggcagtcaac cgagtgaggt tagtaaaggt gttagtgtcg acactggtca agcagctgag 2940 ggcgagaatg tccatgaagc ggctgagggt gttgacatag cagatgcgga tgctatatcg 3000 gtggctggaa cctgtggatc ggaagtagtt gaccataagc tggatgaatc cgaagagcaa 3060 gatggtaatg aagagaccac agtagcgagt gtctttgctg aggaccagag tagcagtgat 3120 gcggagctag agagtgacac tggtgaggac acactacctg aagctgagtc agacagagat 3180 gtggtgggga taagtcctga ggtaacagtg actggcaagc gtatgcatcg agatgagact 3240 ccttcagagg aggctcgtgc agagctggat gcggataaga caaacgtgaa gaagacacgg 3300 actggactac gagaagttca cgagcgtcga cgtccggcgt atctcgatga ctacatggtg 3360 aacgtgacga tgaattcctc acgtgtactg gataagaatg gaagacccat tcgtgcaagt 3420 gagatcaaag ttccacgtaa tcgtcgtgag atgatacggt cgaagtggtg tgacttcttc 3480 atgatggccg aaatggaaga gcttgcagct ttgaagaaga aaggagtgat tgccgagatt 3540 cctgcggatg aaatgccgga ggaagcatca cccgtgaaca cgatgtgggt atatgacatc 3600 aagaccgatc atcaaggata tgtgattcgt ttcaagtcgc gcatagtggc gctgggtaac 3660 tatcaaagac ccgggattga ctttaaggag acgtttgcat cggtggcgag gatgtcgtcg 3720 ttcagattgc tgttggcatt agcagcgcag ctgggattaa tggtgtatgg cggagatatt 3780 aacaccgcat acttgaatgc ccagttggag atccagcagt acttgagatc cattgaagga 3840 tacccatgca agatcaacgg atatgtttat atcgtgttga aggcgctata tggtttgcat 3900 cagtcaggtc gcgagtggaa ctcggagctg aacaactggt tgatgaagca cggatacatg 3960 cggtcgttga cggaaccgtg tctgtactat cgttttgacg gagatacgat catgtatgtg 4020 ctagtgtatg ttgatgacat actggttgca acgaatgacg agcagagcaa gaaggacttg 4080 ttcgcgcagc tggacaagga gtacgggatt aaggatcaag gtctgttgaa tgagtacctg 4140 ggtgtgaaag tggagcaaac gactgagaga atcacaattc accaagggaa atatgcacga 4200 gagattctga gcaagttcgg gtaccagaat gcccatgcgg ttggaaatcc aatggaagtg 4260 aacttgcggt tggcaccaat gagcgatgag gaaacaggag atacgagttt tccctatcga 4320 gagtctattg gaatgctgat gtacttggca acgagcacca gacccgattt ggcgttcgcg 4380 gtgggccaac tgagtcggtt tgtgggcaaa ccgtctgcga aacatgttgg aagtctgaag 4440 agagtactgc ggtacgtggc cggaacgctt gactatggaa tcacgtacac aagaactcaa 4500 ggagcaacta gggaagttgt acttgaaggg tattgtgaca gcgactgggc gaatgatcca 4560 gagcagcgga agagcacaac ggggtttgtg ttcatgttgt ctggaggagc tattgcctgg 4620 atgtcacggc ggcagtcgat tattgcgtta tcgacagctg aggcggaata tgtggcggcc 4680 tgcgaggcta ctatggaagc tgtagcagag gggaacattc tgcaggagat attaccagat 4740 catgaggtca agttacgaat tggtgttgac aaccaagcag ctcatgtgat ggcgactaat 4800 cctacataca gcagacgcac gcgacacatt gaactccgat ggcactatgt gcgggaacaa 4860 gtggtaaagg gcaccattga tctgcacaag gtgaaaggcg aggcgaatcc tgcggacacg 4920 tttaccaagc cgctcaacaa gattcgcttg aaggcgatgt tggagctggc tggcgtgaat 4980 taggccaagt agtcgaagtt gcacttcgag ggaggcg 5017 // ID Gypsy-4_PSo-LTR repbase; DNA; PLN; 436 BP. XX AC AAQY01000325; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PSo_; KW Gypsy-4_PSo-I; Gypsy-4_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-436 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000325; Positions 68916 68481. XX SQ Sequence 436 BP; 80 A; 117 C; 152 G; 87 T; 0 other; tgctagagga ccgtagagag agactgcggg ggctgcggtg cctatagttg gcgccttggc 60 cgaggggtct gtgtgtgcga atgtaccgtg cgggccaggt ggcttgtgca gggtgacgca 120 cggcggcccg ttacatattt catagggaat agcggggagc agcccggtca ctcccaggcc 180 gtggtcgctt agtgctccct cctcatcgtc tctatcctgg accctcaagg ggaaagggcc 240 agtcttagct ggtggaacac tcagccccga cccggcgatg agtacccgtt gcctaggtgg 300 ccaggccacg aacagttctg aggatgtgat tctaagctag ttacccgaac gaggcgggtg 360 ctggcgatgc tagttgcccg gacgcggcgg gctctagttg atgatccaac ccgggagagg 420 cccggaggta actaca 436 // ID Copia-14_PIT-LTR repbase; DNA; PLN; 337 BP. XX AC AATU01002991; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-14_PIT_; KW Copia-14_PIT-I; Copia-14_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-337 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002991; Positions 53760 53424. XX SQ Sequence 337 BP; 71 A; 105 C; 86 G; 75 T; 0 other; tgtgaagtgt ggaggaagag ccaggactgc gtccagctca aacctgaggc tcaggtgcct 60 ccaggacgcg atgctcgcgt ccagaagccg gacttcgacg gaccattggc tggcgagccg 120 ccagccccat cctactgcta atcctacgaa tatatatgtt accgggggtt ttccgtgtgc 180 tgctacacac tcgacaactt gcgccgtcaa gagcaagcag cagcactcgg ttttctcccc 240 tgctggactt tcagtccctg caacttactg ttgttacgac tacttccttc atcgcaatgg 300 tcaccactcg gcgtagccga ggagcgacca tcactca 337 // ID Gypsy-32_PIT-LTR repbase; DNA; PLN; 226 BP. XX AC AATU01001269; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_PIT_; KW Gypsy-32_PIT-I; Gypsy-32_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-226 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001269; Positions 52963 52738. XX SQ Sequence 226 BP; 64 A; 61 C; 52 G; 49 T; 0 other; tgtcagcaga gcgacctgtg acgcgcgcat ctgtgacgcg cgccaaagtg gaacgacttc 60 aaccactgca tggttggcta gcaagagcta gtgaacgctc tttagtcaag tcacaagctt 120 taaggagctt gcgcagcaga tagcagaggc cgtgcttaag ctactccaat acatcagttc 180 ccattttacc tttaacaaca acaatcacca ctagcaactg gtgaca 226 // ID Gypsy-51_PIT-I repbase; DNA; PLN; 4101 BP. XX AC AATU01004506; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_PIT_; KW Gypsy-51_PIT-LTR; Gypsy-51_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4101 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004506; Positions 4701 601. XX CC Positions [3311-3799] - Integrase core CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 51..1709 FT /product="Gypsy-51_PIT-I_2p" FT /translation="MSEEGADVSRTVTFQVTTRKKTTGREREFIKISIPRF FT SGGSAQEWLRWIQQFEHLSIMKKWTSEEKSQHLHLVLDDEALDAWIDTAED FT VDMTDKDAFQKAYESWGHMFVPNMYHERLEEELFLFAKRRNETVAECHQRM FT RQIIRMLKNLPTNALEIDEQSMIRTFKRAMPNEWKTAYEFSGVHLTTMPKA FT VQYFERLEQSERRQGKERHAGGWKQHAKQNGSKQNGGKPNGGKANGGKHFG FT KKNKKEFNSSKQFQSRDKTNSDKWCSLHKTSSHSDSECFTQQKNASRGGTS FT QWSAAKKTEEAKMTNVEEMASDYSFSDESECKVISRILNDKEPGRKPPMRL FT RFRLCKTLQERVALVDTGCGTSFINADLLAANQELGFEMTPLDRTYEQVDG FT YVKASGSTPVQFRFMDLNYGSRITHTFSVINNTRDEMVIGRDLLSALGVIV FT NFRDGMVEWKGNTVAVNTGDKSRVSDERGGEDVQEEVKEINDTSVEPKDLV FT ETADIDQSTYEQILVLLTQFEQLYNGHLGRMTFPDYISAYGRTVHACPSSP FT IFDSKV" FT CDS 2135..3967 FT /product="Gypsy-51_PIT-I_1p" FT /translation="MIFSFSPERQKTILEHLRVVLSRLQEFNVTLNGKKCH FT IFCSSVEYLGFTINADGIKPQEKKIQAILQIQRPKNKKELRRFIGMINYYR FT EMIPSKTAMLKPLTRLTSPKVVFQWTSSEDDAFEGIKKALARAVLLTFPDF FT SQPFEIYADASGKQLGGLIEQQGKLIASYSRSLTTAQQNYTATELELLSVV FT EILKEYRSMLLGFPIVVHTDHKNLIYPTENSLRVKRWKLLLSEYHITCKHI FT PGRDNIAADAFSRMTYDTSKKTGNAELEALLIDPVECVLDGNYIKQHQDAD FT STTQNIVQTCMNGTNNPDYQIENIMGARLLSCQHRVVIPKELRQELVEWYH FT TQLVHPGAKRQYHTMKSFYYWSGMERTIVDFVKKCLTCKRAKLHGGPQAYG FT KLPPRQMHNVDPFDVVHVDTMGPYGSDRYYALTVIDEATRWLEVSIQENNK FT GKTTAENFDVTWLCRYPRPKEVVFDRGNEFNTTEFREMLASYAVKPKPISS FT KNPQANAICERVHLVLNNCIRCYPEADWRQVIQYAAFAVRASFHTILDTTP FT AHLVFGQDLITRQLHETNWSYLTKRRFEAILRDNGRENTAGAFLSPRRSSN FT DSSSCKRSRQQTP" XX SQ Sequence 4101 BP; 1219 A; 852 C; 1081 G; 949 T; 0 other; ctttgagata tctcaaacct tgtggaggca aggaaggcaa gaaagtaaca atgagtgaag 60 aaggtgcgga tgtgtccaga acagtaacgt tccaggttac gacacgaaag aagactacgg 120 gtcgcgaacg tgagtttatc aagatcagta ttccgcgttt tagtggaggc tcggctcaag 180 agtggctgcg gtggatacag cagttcgaac atctgagtat catgaagaag tggacgtctg 240 aagagaagtc acagcacttg catttagtgc ttgacgatga agccttggat gcgtggattg 300 acacagcgga agatgtggac atgacggaca aggatgcctt tcagaaggca tacgagtcgt 360 ggggtcacat gtttgtacct aatatgtacc acgagcggct cgaagaagag ctatttctat 420 ttgcgaagcg tcgcaatgaa acggtcgctg aatgccatca gcgaatgcgt cagattattc 480 gcatgcttaa gaacctacca accaatgctc tggaaataga cgagcagtca atgatccgta 540 catttaagcg ggccatgcca aacgagtgga agaccgccta tgagttcagc ggagttcacc 600 tcaccaccat gccaaaagcc gtacagtact tcgagagact cgagcagtcc gagcgacgtc 660 aaggtaaaga gcgccatgct ggagggtgga aacagcatgc caagcagaat ggcagtaagc 720 agaatggcgg aaagccgaat ggtgggaagg ccaatggtgg gaaacacttc gggaagaaga 780 acaagaagga gtttaactcg tccaagcagt tccagtcacg tgataagacc aacagtgata 840 agtggtgtag cttacacaag acaagttcgc atagtgacag cgagtgtttt acgcagcaga 900 agaatgcgtc gagaggtggt actagtcagt ggtcagcagc aaagaaaacg gaggaggcga 960 agatgacaaa cgtcgaagaa atggcctcgg attactcgtt cagcgatgaa agtgagtgta 1020 aggtcatcag cagaatactg aatgacaaag agccaggcag gaagccgcca atgcgtctcc 1080 gtttccgact gtgtaagaca ttgcaggagc gcgtggcgtt agttgacaca ggttgcggaa 1140 caagtttcat caatgccgat ctattagcag ctaatcaaga acttgggttc gaaatgactc 1200 ccttggatcg gacttatgag caagtcgatg ggtatgtcaa agcttcaggg tctacgccag 1260 ttcaattccg gtttatggat ttgaattatg gatctcgcat tacgcacaca ttttcagtca 1320 ttaacaacac cagagacgag atggtgattg gacgggatct gttgagtgca ctcggagtaa 1380 ttgtcaactt ccgggacgga atggtggagt ggaaaggcaa cactgtggca gtgaacactg 1440 gagacaagtc cagggtgagc gatgaaagag gaggcgaaga cgtgcaggag gaggtgaaag 1500 aaatcaacga cacgtcagtg gaaccgaagg atctggtgga aacggcagat attgaccaat 1560 ccacatacga gcagattctg gtgctgttaa cgcagtttga gcagctgtat aatggacact 1620 taggacggat gacatttcca gattatattt ctgcctatgg cagaacagta cacgcctgtc 1680 caagctcgcc catattcgat tccaaggtct gaagagaatg cagcacgaaa agagattcat 1740 cgactcatgc aagtcgacgt gttggaacag atctttggta gcgagtggtc ttccccagcg 1800 tttttcttga agaaaccaga tggacgtctg agattgctaa ctgacttcag agctttgaat 1860 aagttcctga agcgtaaccc atattacgta cccctaatta gggatgtttt cgttcgactt 1920 ggtggtgcaa agttcttctc aacactggat gctaacatgg gatattacgc tagacaactg 1980 gctgaggaga gcaggccgtt tactgcattc tgtactccgt ttggtaaatt tcagtataag 2040 agactgccga tgggaatctc aacggcgcca gacgaatacc aagcgtgtat gtcaagaatt 2100 ttaggagatt tggacttcgt tatcgtctat ctagatgata ttctcatttt ctccagaacg 2160 gcagaagacc attttggaac atctacgagt ggtgctttca cgtttgcagg agttcaacgt 2220 gacactgaat ggtaagaaat gccatatctt ctgctctagt gtggagtact tgggctttac 2280 cattaatgca gacgggatca agccccaaga gaaaaagatt caagccattc tccaaatcca 2340 acggccaaag aataagaaag agctacgtcg gtttatcggt atgataaact attaccggga 2400 aatgataccg agtaagacag cgatgttgaa gccgctgacg agattaacgt caccgaaggt 2460 tgtatttcaa tggacatcga gcgaagacga cgcttttgaa gggatcaaga aagctttagc 2520 aagggccgta cttctgacct ttccagattt ctcgcaaccg ttcgagattt atgcagatgc 2580 gagtggaaag cagttgggtg gattgatcga gcaacaaggg aagctgatag catcgtactc 2640 tagaagcctc actacagcac aacagaatta tacagcgacg gaattggagt tgttgtctgt 2700 ggttgagatc ttgaaagagt acagatcaat gctacttgga tttccaattg tggtccatac 2760 agaccataag aacctcattt atccaacgga aaattcctta cgggtcaagc gctggaaatt 2820 acttttgtcg gaataccata tcacgtgcaa gcacattcca gggagagaca atatcgctgc 2880 agatgcgttt tctcgaatga cgtacgacac gagtaagaag acaggaaatg ctgagctaga 2940 agccctgtta atcgatccgg ttgagtgtgt gcttgacgga aattacatca agcaacacca 3000 ggatgcagac tcgaccacac aaaacatagt gcaaacatgt atgaacggca ccaacaatcc 3060 cgattatcag atcgagaaca taatgggtgc acgtcttctt agttgccagc atcgtgttgt 3120 gattccaaag gaattacgtc aagaattggt ggaatggtat cacactcagt tggttcatcc 3180 aggtgcgaaa cgccaatatc acacgatgaa gtcgttttac tattggtccg gtatggagcg 3240 tacaatcgta gatttcgtga agaagtgctt aacatgtaag cgtgccaagc tacacggtgg 3300 gccacaagcg tatggcaaac taccaccgcg tcaaatgcat aacgtcgatc catttgatgt 3360 agtgcatgtg gacaccatgg gaccgtatgg tagtgaccga tactacgcct taaccgtgat 3420 tgatgaagcc acgagatggt tagaagtatc gatccaagag aacaacaaag gaaaaaccac 3480 tgcagagaac ttcgacgtga cgtggttatg tcgttatcca agaccaaagg aagttgtatt 3540 cgatcgaggt aatgagttca acacaacaga gttccgtgag atgcttgcga gctatgcagt 3600 caagccgaaa ccaatatcct cgaagaatcc tcaagccaat gcaatttgtg aacgagtaca 3660 tttggtacta aacaactgta ttcgctgtta tccggaggca gactggcgtc aagttattca 3720 atacgctgca ttcgcagtac gtgcaagttt tcacacgatt ctggatacaa cacctgcaca 3780 tctggtcttt gggcaggact tgattacacg acaacttcat gaaacgaatt ggagttatct 3840 cactaagcgc cgatttgaag ctatattgag agacaacggg cgcgagaaca ccgctggagc 3900 atttctatca cccaggagat caagtaatga ttcgagtagc tgcaaaagat cgcggcaaca 3960 aacaccgtga ggtggccaaa ggaccatact ccatcgtgga agtgcacggt aatggcaccg 4020 tgacgctgga ttatggagtg acgcaggagc gcgtcaacat tcgacgtctc tttccgtgtt 4080 gagcggcaac tggcatgggg g 4101 // ID Gypsy-29_PIT-I repbase; DNA; PLN; 4764 BP. XX AC AATU01001420; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_PIT_; KW Gypsy-29_PIT-LTR; Gypsy-29_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4764 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001420; Positions 28352 33115. XX CC Positions [3582-4088] - Integrase core CC 'CCGCC' target site duplication CC LTRs are 91% similar to each other. XX FH Key Location/Qualifiers FT CDS 496..1521 FT /product="Gypsy-29_PIT-I_1p" FT /translation="MNAVKARCHTLKNEFVPDVTSLFRQKLKMDFSVDDCD FT ARVFRYYEDFNGIVESNGLQKLIGTGNETEAGYKSRLKARCRILVDNLQPP FT VLKAQTTRLIDLERRDCRSDDVALFDLILEHAKVQQRFHRLSPDYATKADT FT KAGRPAERKSPRPETVTPATSAPATASAAAQPSRSSQPAQRPRSSNPPPHD FT GCLFCKGPQWMKDSPTATDAQRTAARERFQAFKEQSAGALRSKVARHKMST FT GSVCINSLLTGPYVPDTGADRSVIPKVIAASLRAVQPTLSTIRLSTPVEAE FT MADGRRLICDQELLLDLELTREAGLVSLRSVSCLVLGGDGDELLLGRDVL" FT CDS 2121..4721 FT /product="Gypsy-29_PIT-I_2p" FT /translation="MPLHEDSREMISFVTPDGVFTPNRVPQGAMDSALHFQ FT GQVQAKLAPLIPHRALVWVGDVILFAPTISEFLQTLRAFFKIVSAAKFKLN FT MAKSSLYELEILWCGRLISSEGVRHEPSRVSALAELPLPATVADLQYFVCA FT TNWLHDSLPDYARIIAPLHEKLNAERARLGRRNRNALSVATTWTVDEQVAC FT SNVKSLVKDSALMVFPDPNAQLLLFTDASATGYAIVVTQVRDWDPSLLVDE FT EHHELIVCKGGLFKHHELNWTVVEKEAYPIVKVCHDLEYLLLRPNKFHLYC FT NHANLAYIFALNVELKKHVRDRLQRWAMRLCGLQYTIEHIPGEKNVWADIV FT SRWHARVIVIVAAVQTRSRHIVPVENLSQLRPLSDDQFIFPTLNDVRAAQL FT AASSERARLQNASEREDGVVTVDNRLWIPTGAKDLLARIFVVAHCGSQGHR FT GEEAMALALKKRFAIGKLDGKVAKFVRECLLCKHSKGPRQIPRPYGPLLAT FT TQRNEVVHWDFLFLGEGFSNSAYLLAVKDGLSHFCELFPCATPTAYVAAEA FT LTLWYARYGLPQTLLSDQGTHFRNEMVKHLAARLKMELQFTPVYSPWLNGT FT VERLNKDVMQVLIALLMEYALDQHEWPYVLPAIQASLNHTPVPSLAGHAPV FT EVFTGLPASSALDAIVVPSTDDRAEHVVDLDDISESVDQLLSSLHAIHQEV FT TNTKERQRLRDMAAHKGTPANFDVGYFVLWSRIDQRLPHNKLLGHWVGPFR FT VMKALAHSFDIEHLVSGRKYDVHANRLKYYADAELNTSAKLLELVSSQGLL FT LGVEKFVDYHFSQQQSRWELLVSWIGLQAIENAWEPLTALLHDVPAKVQEY FT VDSMEDAELSAQLD" XX SQ Sequence 4764 BP; 1019 A; 1339 C; 1345 G; 1061 T; 0 other; aagctagctt tgcgctagtc gaagcgcaag ttttcttaat cctaggtctc tcggtgcgcg 60 cgtcgaccaa tagacacctg ctgtcgtcgt tgtgtcgtgg acactaccgg acttcgtcga 120 ctaagtgcgg attagaaatc cgtacccggc ttaagtgcgg ttcgcattaa gttcggttca 180 ttcaacttca acgtcaacca tgtcgggtcc aggctacagg ctagactccg acggagacgt 240 tgagatgtcg atcccctagc cgatcttcga ggtcatccgg gcaccggagc tgtccagctg 300 agaccattct gctctgattg agtggtatcg cgagtgggag cactacgtgg agaagattcg 360 gcaccgctgc acgacagccg gcgagacgtt tgagaacgtt gtggccacag tgaaaggttg 420 cctgaagccg aaaacgctga aaaatttggc cacgtatgtg ctgaagaagc cgctcgccta 480 agtgattctg acatcatgaa tgctgtcaag gcccgctgtc atacgctcaa gaacgagttc 540 gtgccagatg tcacgtctct gttccgccag aagctcaaga tggacttctc ggtggatgac 600 tgcgacgcac gcgtcttccg ctattacgag gacttcaatg ggattgtgga gagcaacggg 660 ctgcaaaagc ttatcggaac tggaaacgag accgaggcgg gctacaagag caggctgaag 720 gctcgttgtc gcatcttggt ggacaaccta cagcctcctg ttctcaaagc ccaaaccact 780 cggcttatcg acttggagag gcgtgactgc agatctgatg acgtcgccct cttcgacctg 840 atactggaac acgcgaaggt gcaacagcgt ttccatcggc tgtcgcccga ttatgcgacg 900 aaggccgaca ccaaggctgg gcgaccggca gaacgcaagt caccgcgacc agagactgtc 960 acgcctgcaa cctcagcgcc cgcaacagcg tcggcagccg cacagccctc gcggtcttct 1020 caacccgcgc agcgcccccg atcatctaat cccccgccac acgacggatg cttgttctgc 1080 aaagggcccc agtggatgaa ggacagcccc acggctacgg acgcgcagcg aaccgcagcc 1140 agagaaaggt tccaggcttt caaggagcaa agtgctggtg ctctcagatc caaggtcgct 1200 cgtcacaaga tgagcactgg gtccgtttgc atcaacagtc tgctaacggg gccttacgtc 1260 cccgatactg gtgctgacag gagcgtcatt ccgaaagtaa tcgcggcttc gctccgtgct 1320 gtgcagccca cgctctcgac cattcgacta agtacgcctg tagaggcgga aatggctgac 1380 gggcgtcggt tgatctgcga tcaagagctg cttttggatc tcgagctgac acgggaggct 1440 ggccttgtgt cgctgcgatc ggtgtcgtgt ctggttctgg gcggcgacgg agacgagtta 1500 ttattagggc gagatgtgct atagggttcg gcatcgatgt tgaccagcag ctcgctcaac 1560 tggccgggag cacaccgctt gacaatgcag aggacgagtt tcctgttgga gacgcacttc 1620 ctgacccgca gccagatact gagccaatca tctcgctcag ccagctgcta gaccgtgcgg 1680 tggtaaatgg actgccagag gagaacgttg acaccgtccg agggttgcta gaggagttcc 1740 cagacgtttg gcgcgaggca gttggagcag acccgccggc cgatgtcgag ccactcctgg 1800 tgacgttacg accaggtgcc gtgcctcacc gcagtgcccc gcgcaagtat gcccctttac 1860 aagctgcttt tattcgagaa tacgtgaagt ctctcgtggg aaatggctta gtggagcaga 1920 gcaatgcgtc gcgatggacg tgtgccgttg tcctgtacgc aagccagaca cccatgacaa 1980 atttcgtctg accgtcgact accggccggt taacacaatg accatcccta ttgccggtgc 2040 catgccttcg gctgccaccc aaatcgactc gtttgaaggc aagcagtttt tcgcccgatt 2100 ttacgcaggg cttttggcag atgcccctgc acgaggacag ccgagagatg atctcgttcg 2160 tgacgccaga cggtgtgttc acgccgaatc gtgtaccaca aggagcgatg gactccgccc 2220 tgcattttca aggtcaagtg caggctaaac ttgcacccct tatcccccac agggcactgg 2280 tttgggtggg cgacgtgata ctgttcgcgc ccacgatctc ggagttctta cagacgctcc 2340 gtgcgttttt taagattgtg agtgcggcca agttcaaact caacatggcg aagtcgtcac 2400 tgtatgagct ggagatcctg tggtgcgggc gccttatttc cagtgaaggt gttcgccacg 2460 aaccgtcccg tgtcagtgca ctggcagagc ttccgcttcc agcaaccgtt gctgacctac 2520 agtacttcgt gtgtgccacg aattggctgc acgactcgct tcctgactac gcgagaatta 2580 ttgccccgct acacgagaaa ctgaacgcgg aaagggccag gcttggtcgg cgcaaccgaa 2640 acgcactgag tgtggcgaca acctggactg tcgacgagca ggttgcctgc agtaatgtca 2700 agtcgctggt gaaggattcg gcgttgatgg ttttccctga cccgaatgct cagctgcttc 2760 tcttcacgga cgcctcggcg acgggctacg ccattgtcgt cacccaggtg cgcgattggg 2820 atccatccct gcttgtggac gaggaacacc acgaactgat cgtgtgcaag ggtggtttgt 2880 tcaagcacca cgagttgaac tggactgttg tggaaaaaga ggcctacccg attgtcaagg 2940 tctgccacga ccttgaatat ctactgctcc gccccaacaa atttcatttg tactgcaatc 3000 acgccaacct ggcttacatc tttgcgctca atgtcgagct gaaaaagcat gtccgcgatc 3060 ggctgcagcg ctgggcgatg cgtctttgtg gccttcagta cacaatcgag cacattcccg 3120 gcgagaaaaa tgtttgggcc gacatcgtct cacgatggca cgcgcgtgtc atcgtgattg 3180 tggctgctgt gcagacgcgc agtcgtcata ttgtccccgt ggagaatttg tcccagcttc 3240 gccccctctc tgacgaccaa ttcatcttcc ctacactgaa cgacgtccgt gcagctcagc 3300 tcgctgcctc cagtgaacgc gctcggctgc agaacgcttc ggagagggag gatggtgtgg 3360 tgacagtcga taaccgccta tggatcccca ctggtgccaa ggacttactc gcccgaattt 3420 ttgtcgtcgc tcactgcggt tctcaaggcc accgtggcga ggaagctatg gctttggctc 3480 tgaagaagcg ttttgccatc ggaaagctgg acggtaaagt ggccaagttt gtgcgggagt 3540 gtcttctgtg caagcattcc aagggaccac gtcaaatccc gcgtccatac ggcccgctat 3600 tggcgacgac gcagagaaac gaagtcgtgc attgggactt cctgttccta ggcgaaggct 3660 tcagtaactc cgcgtacctg ctggctgtga aggatggtct gtcgcacttc tgtgagctgt 3720 ttccgtgcgc tacgcccact gcctacgtcg ctgcggaagc attgacgctt tggtatgccc 3780 gatacggatt gccgcagacg cttctatccg accaaggaac gcatttccgt aacgagatgg 3840 tcaagcattt ggcggcgaga ctcaaaatgg agctccaatt tacgcctgtg tactcaccat 3900 ggctgaatgg gacggtcgaa cgactgaaca aggacgtcat gcaggttctt atagcgttgc 3960 tgatggaata cgctctggat cagcacgaat ggccatacgt gttgcctgct atccaagcca 4020 gcctgaatca tacaccggtc ccatctcttg ctgggcacgc tcctgtggaa gtcttcacgg 4080 ggctgccagc atcttcggct ttggatgcta tcgtggtgcc ctctaccgat gatcgagctg 4140 aacacgtcgt cgatctggat gatatcagcg agtctgtcga tcagcttctc tcctccctgc 4200 acgctatcca ccaggaagtg acgaacacca aagagcgcca gcgacttcgc gacatggcgg 4260 cacacaaggg cacgcctgcc aactttgatg tcggttattt cgtactgtgg tcgaggatcg 4320 accaacgcct gccgcacaac aagctgcttg gacattgggt cggtccgttc agagtgatga 4380 aagctctcgc tcattcattt gatattgagc atctcgtctc agggcggaag tacgacgtgc 4440 atgctaaccg tctcaagtat tatgctgatg cggagttgaa cacgtccgcc aagctgctgg 4500 agctggtgtc tagccaaggc ctactcctcg gagttgagaa gttcgtcgat taccacttca 4560 gccagcaaca gagccgctgg gagcttctag tttcgtggat cggccttcag gccatcgaaa 4620 acgcctggga gcctctgact gcactgcttc atgatgtacc tgctaaggtg caggagtatg 4680 tggattcgat ggaagacgcc gagctcagtg ctcaactcga ctagcaacac accgcagcaa 4740 ccgcaaccaa gctctggagg gctt 4764 // ID Copia-5_ES-LTR repbase; DNA; PLN; 238 BP. XX AC CABU01009248; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_ES_; KW Copia-5_ES-I; Copia-5_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-238 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01009248; Positions 965 728. XX SQ Sequence 238 BP; 58 A; 52 C; 61 G; 67 T; 0 other; tgttggagta attgcggtac aagaacgact ctattctact gcatgggttt atgcggtatt 60 gtgaaggcgt tgccaagtct gtaaccgtca ggtgaagaca gcttgggcgt ctgtgtggat 120 aataatatca ctctgtgtgt ttgcctacct aacctcgcat cacatgccag ctactttgta 180 gccacagctg aaggaatagc tgtacagcaa ctgcagtgac agtgctgttg cctcaaca 238 // ID Gypsy-12_PIT-I repbase; DNA; PLN; 5071 BP. XX AC AATU01002960; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PIT_; KW Gypsy-12_PIT-LTR; Gypsy-12_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5071 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002960; Positions 112131 117201. XX CC Positions [3794-4297] - Integrase core CC 'AGCGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1575..3209 FT /product="Gypsy-12_PIT-I_2p" FT /translation="MQTLGYSTDTILANARNVQPEWEHERIVSKMETRADV FT EPSALQRMSRVQLAARDPVVETQADDDVDRYESRTALPDMKLSALQAVIDQ FT LEESQRLAATAGLSAPGQIKLRAILAVRADNFRLAFGYDPPVKVAPLQVRL FT KPNAKPVKCQPRRYSPNDRLFLDRHTSTLEEAGVIYMNHRSVWCSAPRIVR FT KKEQDIDPNADPRMTVDTRAVNDQTEPMPWPMPVLEVVVGELEGYGFYFLL FT DWFRGYWQLPLHEDSQELYSFVTHRGVYTPRRVPMGATDAVAYCQWVVEEI FT FGDLLGKGILAWLDDILGYAKTEDDLLVLLDKVLGRCEHFGLKLHAKKCRF FT FTKEAKWCGKLFSADGVRHCPERVQGLVDMQAPMTAGDLQQFLCAVNWMRQ FT GIPEYNRLPARLSAVLERAMAAAGSRKKAKLSNLLLADVGWRDEDVAALTT FT VRQALLKMVPLAHPRAKAEVCIYTDASHDYWGAVATQLEPEELQLPLAEQN FT HRPLAFLSGRFVGAASRWPTIEKEAFAIVEATRRLEYLLMRPASLYRPS" FT CDS 3797..5023 FT /product="Gypsy-12_PIT-I_1p" FT /translation="MVRPYVQQSRTSCFISIFYPWLKAVGGVKYVLVLKDG FT MSGFVELVACVAATSDQVYESLMDWFKRFGVVSQWVSDQGPHFKNQVVERL FT QRALGAQHHFTTAYTPWANGTVEVVNREVLRCVKALASEKKLLVTDWPSLL FT PVVQAALNGMPADRLGGVCPLTAFTALPGGSQLRGILHPREAIEASLEWVD FT AELKKYIEGVRDSLDGMHHELTSACEKRRRAARQRHAKKKGVKLQRFSVGD FT YVLAATTTGTCGNKLSLIWRGPKRIVHAINDYTFEVQDLVAPFTVTLRHAS FT RLQLYRDSQRGAVEDMIEQAIHGEGGHLVDALLACRLSPATHRWEVQVKWI FT GLDEIEASWEPAETIKHDVPVLFQKFVDAVPQDRARASMATALGLVAPPAP FT VVPRRLSRGRRPGRP" XX SQ Sequence 5071 BP; 1104 A; 1361 C; 1597 G; 1009 T; 0 other; aagctaactt tagttacctt tcttgctcag ttcgagctca agctccgcgt tgtgtgacgc 60 gagatggcaa gtaagaaaga agacgtaatg gacgaactcg aagagaagac cagaagaatg 120 taattgcaga gcgtcgggtc ggcgcggtcc ccgggtctcc attacaaatc ccgaacccgt 180 tcacggaagc gacgggcccg gacgaggcgg atgatgaagg catgccgacg gtaagcccgc 240 ggtcaagcca agggcgcgtt gcggcagcgc cagcgcttcc ccagcctccc agatacaagg 300 gtgtaaccat gcaagaccgg agggacttca tgaaggcata caaaacgtat cttgcagcag 360 ttaatgccct gcagacccaa tggactggcg cgtttgcaat gccagtgggt gcgtgtattg 420 agagcggcac gaagcggctt atcgctcgtt ggaccttcgg gaagtccccc gaacagatca 480 cggaagacga gtggatccaa tacttcaaac aagcgaatgt tgcctcggtc gtagactatg 540 ccacggtgga cgcggccatg ataagctgaa gatggacacg tcggtgcccg agccggagag 600 ccgcatgatg cgcctccagg ccgacatgac cacgatcctt gagcgcttca atttaaccga 660 cgtggcgttc gccaacgagc agcgccggct cgtcaagtac atggtggccg cactgcagcc 720 ccaaggattc aaggcggtga tcacgacaaa gctcagtctc cacgagcaca agacgttgcg 780 ctcgaaggtc gtgcccttct gccagtgggt gacccagctc atgaaggagt tcatgacgtg 840 ggaacacgca atgcaaagtt ctggtggaca cagtggcggc acatccggag gatcaaatag 900 tggacggtcc agtggtcgag gcggtggccg gggccacaac gccagtgatc gtggtggaag 960 tggacgtcac tacagccaag ggagcggtgc tgccgctgct gatggtgtcg ctggtagcgg 1020 ggtggccaga cacccccacc aggaagagat tcaacgtctg ccggagatgg gaggccgcat 1080 cggcgaggag ccggtgcgtg tctcaaatgc gggagcgacg ctcatcaagc tcgggactgt 1140 ccaaaagcgt cgcccgagga ggcctctgag ctgttgcgaa agctgttctc ttcgactgaa 1200 ggcgccaaga tgcgccgcat caaggaaacg cctgtccgga caaagcgtag ggagagtgaa 1260 gacacaggca ctgtcgaggc tcaggtcgat ggcctgagaa tcgaagcagt tcttctcgac 1320 agcggggcgg acgtgtcgct ggtaaccagt ggagtaatca acgcgcttgt tcttcgtgga 1380 gcctcgcccc agattgaatc catccaagcc cgcgacctat tgcccgtcgg tggccgtcgt 1440 gttaccgtgt cacgagctgt cacgtttgct gaggtgttgc tcagcaccac ggccgggccg 1500 ctcaggctta ggaatttact ttgttggatt gaaaagggaa ccaagagctc gagttgacgg 1560 tcagtcggcc ggttatgcag acgctcggct actcgacgga tactatattg gctaacgcga 1620 ggaacgtgca gcctgagtgg gaacacgaga ggattgtctc aaaaatggag acgagagctg 1680 acgtggagcc atcggcgctg cagcgtatga gccgagtgca gctggccgcg cgggatcccg 1740 tggttgagac gcaggctgac gatgatgtcg accggtacga gtcgcgaacg gcgttgccgg 1800 atatgaagct gtcggcgtta caggccgtca ttgaccaact cgaagagtcg cagcgacttg 1860 cggccacggc tggcttatca gcaccgggac agataaagct cagggcaatc ttggccgtgc 1920 gcgcagacaa ctttcgactg gcgttcggct acgatcctcc cgtgaaggtc gcgccattgc 1980 aagtgcgctt gaagcccaat gctaagccgg ttaagtgcca acctcgtcga tattcgccga 2040 atgatcggct gttcctcgac cgtcacacgt ccacgctgga ggaagctggc gttatctaca 2100 tgaaccatcg atccgtgtgg tgctcggcgc cgagaatcgt gcgtaaaaag gagcaggaca 2160 tcgacccaaa tgctgatcca agaatgaccg ttgatactcg ggcggtgaac gaccaaacgg 2220 agccgatgcc ctggccaatg ccggtcttgg aggtggttgt gggcgagctg gaaggatacg 2280 ggttctactt cttgctcgac tggtttcgtg gatactggca gctcccgctg cacgaggact 2340 cacaggaact gtactccttt gtaacgcacc gcggcgtgta tacacccaga cgcgtgccca 2400 tgggggcaac agatgcagtg gcgtattgcc agtgggtcgt cgaagagata ttcggcgatc 2460 tcctcggtaa gggaatactc gcctggctcg atgacatctt aggctacgcc aagaccgagg 2520 acgacttgct cgtgctgttg gataaggtat tagggcggtg tgaacacttc ggattgaaac 2580 tgcatgcgaa gaagtgccgg ttcttcacga aggaagccaa gtggtgcggg aagctgtttt 2640 cggcagatgg cgtgcgccac tgcccagaac gggtacaggg actggtcgac atgcaagcac 2700 caatgacggc tggcgacctg cagcagttct tatgtgcggt gaattggatg cgtcagggca 2760 ttcccgaata taaccgcctg ccagcgcggc tgtcagcggt cctggagcgc gctatggctg 2820 cggctggttc tcgcaagaag gcgaagttgt caaatctcct gttggccgac gtcggatggc 2880 gtgacgaaga tgtagctgcc ctcacaacgg tccggcaggc gctgctcaag atggtgccgt 2940 tggctcaccc gcgcgcgaag gccgaggtgt gtatctacac ggacgcgagt cacgattact 3000 ggggggcggt ggctacccag ctggagccgg aggagctcca gctaccgctt gcagaacaga 3060 atcaccgtcc gctcgcgttc ctgagcggcc gattcgtagg cgcagctagt cgctggccga 3120 caattgagaa ggaagcgttc gcgattgttg aggcaacccg gcgcctagag tatttgctga 3180 tgagaccagc atctctatac cgaccatcgt aatttggtgc atatcttcaa ccctttgggt 3240 acggttggag caatggcgcg gtatcaagcg gacaaactcc agcgatgggc tctgtcccta 3300 atgtcattca agtacgtaat cgagcatgtc ccgggcgagg ttaatgcctg gggcgacctt 3360 ctcagtcgat ggggctcggg accttcatcc agggacgccc gaggcgcaat gcgagtgtcg 3420 cgactagcgg tcgttgaccg cgtctcgccg ttggaagcac ctgagttcgt gtggccgatc 3480 gaggccgaaa ttaaacgcgt tcaagatgca gcgtgcgcgg cgggcgggtt gccagcgaat 3540 ctgacgttca acgaggaacg ccaagttgtc gtcgacccag acggtcgtct gtggatccct 3600 gatgatgctg ttgagttgca acagcgtctg tgtgtagtgg cacacgcagg cgcaagcggt 3660 catcgtggcg cgaccaccac agctaagtcg ttgtcggatc tcttcgcttg gacgacgaga 3720 gctcaagatg tggcgtcctt tgttaatggt tgtttgcatt gcatgaccac agtcactggg 3780 aagatccctc gtccgtatgg tgagacccta cgtgcaacaa agccgaacga gttgcttcat 3840 ttcgattttc tatccatggt tgaaggcggt cggcggagtc aagtatgtat tagtactgaa 3900 ggacggcatg tccgggttcg tggaactcgt ggcatgcgtc gcagccacga gtgaccaagt 3960 ctacgaaagc ttaatggatt ggttcaagcg gttcggcgtt gtctcgcagt gggtttccga 4020 tcagggaccc catttcaaga accaagtggt ggagcggctc cagcgtgctc tgggcgctca 4080 gcatcacttc acgacggcgt acaccccctg ggccaatggc accgtggagg tggtaaaccg 4140 agaggtcctc cgctgcgtga aggcgttagc aagtgaaaaa aagctcctgg taaccgattg 4200 gccaagtctg cttccggtgg tgcaggcggc cttaaatggg atgccggctg accgtctagg 4260 cggtgtctgc ccactcacgg cgttcacagc gctacctggg ggttcccagc tccgcggtat 4320 cctccaccct cgtgaagcta ttgaagcgag cttagaatgg gtcgacgctg agctcaagaa 4380 gtacatcgaa ggtgtccgag attcactcga cggaatgcac cacgagctga cgagtgcctg 4440 cgagaagcgg cggcgtgcgg cgcggcagcg tcatgctaag aagaaaggag tgaaactcca 4500 acgtttcagc gtcggtgact acgtgttggc agcaacgacg actggaacct gcggcaacaa 4560 actttcgctg atctggcgtg gaccgaaacg catcgtccac gccatcaacg actacacctt 4620 tgaggtgcag gatttggttg caccgtttac tgttacgtta cgtcacgcct cgcgcctaca 4680 gctgtatcga gactctcaac gtggcgcagt cgaagacatg attgaacaag cgatccatgg 4740 cgaaggtggg cacttggtgg acgcgctact tgcctgccgc ctcagcccag cgacccacag 4800 atgggaggtc caagtcaaat ggatcggtct cgatgaaatc gaggcctcat gggaacctgc 4860 cgagaccatc aagcacgatg tgcctgtgct gtttcaaaag tttgttgatg ctgtgcctca 4920 agatcgggct cgcgccagca tggcgacggc gcttggcctg gtcgcgccac cggcaccagt 4980 cgttccccga cgtctttcac gtggaaggcg tcccggcaga ccatgatcac cagacgcgct 5040 gatgcaccca cacacgacgc gaggggggaa g 5071 // ID Novosib-1_EmiHux repbase; DNA; PLN; 7102 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Novosib; DNA transposon; Transposable Element; Novosib-1_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 7102 BP; 1124 A; 2485 C; 2344 G; 1149 T; 0 other; gggaggggga aggctggggg tgatttctca gatttttccc gcaacctcct tccccgatag 60 aggacccctc cctgagtcgg cggatcgaat ttccacgcga attcccctcg ggcatcgctg 120 tgaatgagca ttcgcaggcc aggccacagg tgccagccgc actggcggtg ctctcgctcc 180 cttcctcgcc gccacgccga ctggcgagct cgtcgcgggc ggccaggtga tcggctagag 240 cgcagacgtc gggcttggcc tccgtcgccg ttcagatgga cggctgttgg tggtgcggga 300 ccacgaactg gtctcgcaag ggcggtgagg cggccaacgg gctgcccgcc gtggctctag 360 agcgaggaga agcgctcggg ccggcgtctc cggcgtcgac gcgcatccat aaggactgcg 420 cggcggcggt acgcaagaga gcttctgcgc gcgctgctga ggagcgtgct gctccgccgg 480 caagaagcac gcgctccgct gtcgagactg cgcgtcccga cagcaagcgc cccgctgtcg 540 gcggctgggc gacggtgtcg aggccgggca ctagtttagg cttgccgccg cccggcaagg 600 cgcagcggac cgacgcactc gatcggatgg aggaggagcc gccgccgcct catccgctgc 660 cgcctcccgc tcccgctcct gctcctgctc ccgccgccag cagccaggag gaggcggcgg 720 agacaccgga cgcgcgtgtg gcagcccgct cacgtaccag catccgatgg ctctctgtgg 780 agggcgggag cgactcggag atggcgcagc gctgccggaa tgagatggcg gctcgccgac 840 aggtggatga tgagttgagg gctgcggagg cgcggctggc gacagcggag aagaccatcg 900 ccgccctgag gcaggaggtc gccgcgggcg cgccggcgcg ggcgcgctta tccgacctgg 960 agaaggcgag caggggcgcg gtctcgtaca agacgttctt gcaggctgcc gccatctgca 1020 aggacgccgg tcaccagtgc gcgccagagc ccaagtgtcg atctttcccc ccccacttgc 1080 tcactcctcg cgcgcactcc gcccgcagtg acatgtgcgg caatttcgcc ctgtggctga 1140 cttcggaccg ctttcatcca gactgccccg cggcgcatga gctgagcgac gcctccgcca 1200 acttgctgca gccgcacgcc tcgcgttttc gctggtcgga ggcgtcgcag cgccaccttg 1260 tatcgcaaca ctcctcacgc aggtcgagtc tttcacctcg ccctctccgt ccaccccagc 1320 cccaattatt cacaaccctg cgcttccgtg cctcgcagcg cttccgcagc gctcgacatc 1380 cggaacggcc tgaacgagaa gccgggatgg cgtggcacgc ctcagccttc ccacacgacg 1440 ctcgtcgctt ggcgcgagag gatgctagcg gcgccgagcg gcggcagcgc ggacccgcct 1500 ctgggcttcc tgcgaaacaa cgcgatcgac ttcattaacg gctacatcgc gcagctgcaa 1560 gcggatgggc cgcacctcct cgacggcgtc gtgccggtct ggctcgggaa cgatgcgacc 1620 gacatgacaa acgcgcttcg cgagacgcgc aagttcactt ttgtcaacga cgccgaccac 1680 tccctcttcg acccgggcgc gccgagcccg aaggtccttg agcagcgcta tgttgccctt 1740 caacagggcc tcgagcagcc agggagcggc ggcctcgtcg ccgcgcttct cttcctgcag 1800 gagcaggctc cgatgcttgc cgagcgcgcg gcggcatgcg aggcaaacgc tctcaaagcg 1860 ctcgctcgat tccgcaaggc cccccgcctc tccgcatcca ggcgcaccgt cgcaaaaccg 1920 acgaaaagcg tgcaggcggc cgctgagctc gccgcccacg ccgcctcgct tgggctgggc 1980 gacgcgactg tgccgctgga cccagcgcag tacgacctgg actcggcgaa gaaggcgctc 2040 gtcggcaagg gcggtgggcg gctcgtcaaa gtgtatgcga gcgagtattc ggatggagac 2100 gatgaggcgc cgccgcggct gccggggcag gaggaggagg aggaggagga ggaggagcat 2160 tacgttggcg tgatatcaaa ggtggcggcg ggggcgcagg gcgcaatcac agtcagcgtc 2220 gcctatccag gcgtcgccgc aggcgaggag gccactctcg aggagatgaa tttggaagtg 2280 gcactctccc acttggtgcc gtttcatgcg atgaccgagg agcagctggg caagctgcca 2340 aggtcgctgc tcgagcgtga gtgcggcgca gatgggcgga agcttcgggg cgtcagcgga 2400 aagccggcca aggcactagg aacgctgctc tttgacgctc ttgctgcgct cgagcgcgcc 2460 actcccggcg ccgacgaccg cgacgccact gatggcgctg gcggttcccc ggaggccgtc 2520 gccgtcacgc ccggcgaggc tgcaatcgac gacgacgtcg gcgtggtctc aagcggctcg 2580 tccttgcgcg accagctgcg cgagttgtcg gaggggttgc aacagcgcca gatcgtggcg 2640 atcgagaagt acaacgcgct gcacagcgcc gcgtgccaac ggcgcgactc tgcagcggcg 2700 ctgctcgcgg cggtgctcgg tcctaatgat ggtccgctca acgaggagtc ctgcgccatg 2760 ctggtttcgg cgatgaccaa tgtcgatgct ctaaagctgc gggcggtggc gtcggtcagg 2820 gacgtggtcg ccacgatgcg gaagtgcgcg acgaagcttc tggtgtacaa ggtaatggat 2880 tgggccgcgc gccggcccgt caccgtcgcg cgcttcgcgc tgagcggcgc gactagcgcg 2940 cagcggcagc tgcaaataaa cacgtacgtc ttgaatgcgc tgcacgcggc ctttgacgag 3000 cgctgccgcg acagcgcggc gcgcacttcg agcggcggcc cgattgttgc gcgggtccag 3060 cttctccagt cggatggaga ggcgtgcaac ctcaaagcca atccttaccc tggcgcaggc 3120 ccctcatcgc tgctagacct ggccgtcgcc gcggcggagc gggtcaaggc gcttcgtgcg 3180 cagcatcgga gggacgtccc agctctcatc acggctattt tggcggagac ggtcccgaac 3240 ccgttgccgg ccaggctgca gcggctcgga tacacccttt gccctcgcaa agtgccctca 3300 gcagtgccgc ttgaggggga cggcagcgtg cctccctctc cggaggcacg cgagccaccg 3360 acgccgccca ccgcacggca cgacggctct tcgcgtctcc caacctcccc cgacgacggg 3420 gtggggttgc aggtgtcttg agcgccacac gtcatcgctt cccgacatgc ccctagccag 3480 gccaggcgcc tcttagctga ccatttcttc ctaggcgacc ctcgagtggt tcggagataa 3540 gatcgaggac cacggcgccg cttcggtggt gcgaggtggc gccatcctcg gacggctccc 3600 catatggctg cgagatcagt ttgaccgcat ggagcaactg cggccgacgc gtgccacgtc 3660 gcgactggcg ctcgcgttgc ctttgcaggt gacgaagcgg atgctgccgg tgccagagtc 3720 agatacggag tttgacactg agtacacgac actgctcggc ggcgacgtgt tgccggagtc 3780 atttagcgat cggtcaaagt tggcgtatga ggcgctggcc cgggcgcggg ccactcccgc 3840 tgccgtcggc gccgtcggcg ccgtcaccgt tgccaccgtc gccaccgtcg ccgccgtcgc 3900 cgccgctgct ccgacctctt ctcgtattcc accttcagcc acagccgtcg ccgccgctgc 3960 agctttcctg gccgtggacc gtctcccgtt gtttttgctc cgaccggcgc tcgccgttgc 4020 ggtggcggca gacaccgtcg gttgtgtacc gccggcagag actgcggatg ggctgctggc 4080 agagcacggg gcagagcccg tggacgccgc agctgccgcc gccaccgccg atcgaccaca 4140 gcgagcccag ccgagtgccg tcaggccaat cgcgttttgc aagtggcggc catgcagccc 4200 gtcgcaggca gtcgcttctg ccgctgacgc cgccgccgcc gccgccgccg ccgcctcatc 4260 ctccgcagcc gacgccgctc tcgccgcccg tgttcggcca ctcgaggccg ccgccgccgc 4320 cgctctcgcg gccgcccgcg ccgccaccac cgccgcctct acctctgcca cacagctccc 4380 ctcccacgcc accgaggcct ccacccgcaa ccccgccacc gctgctgccg ccgccacccc 4440 agccgcagtc cccacgccca ctgtggcggc cgtcacggcg ccggcgccac caatgtcggt 4500 tgccgtagtg caccgcgtgc tgcgtctcga aagggcgggc ggagcggtgg atcggggtga 4560 gctcgatgtc gacgacctgt acgacgagct gttgctctcc gtcttccagg ggctgagatg 4620 tcagcacctc gagtttcggt cacgcttcta cgcgcccaac ggcgacgcca tcgtgcaggc 4680 cttttgcgca gagcacacgg acaagaattt tgtccaagcc cgatccgagg cgagccgccc 4740 ccgcccccct ctgcccgcga tctgcccgca atctgcccgc aatctgcttg ggcctggccc 4800 tcgttcaact cgcccgtgaa ccactgtccc accccgctgc tcgtagagca agaaggttgc 4860 tgccgacgcc ctcatctcta cgcctgtcat tctcgaggca gggcgagcgc tcgccgagca 4920 ggacccgaaa aagttcgcgc tgattgcgcc tttcctccgg actaccgaca tgcagagcac 4980 cccctccatg gcttggccgc tcgtgtcccc cgagctgcaa cgcgcgcttg acggcaccaa 5040 ggagggtgtg gtgctcgagg cgctcgggct aggtaaccac cccctgtctc ctccccccat 5100 atctccccat atctccccat atctccccat atgcttctcc acgcgccctg cccggtcggt 5160 cacggacctg cactgcgcac acagctgtgc ctttacccac cttcgggaga gaagcggcgt 5220 cgctgggccg gttcgccccc aaaggcggcc ccgccatgat cccggaggag aggggtgcgt 5280 tcggggcacc ccccgctctc acgtaaacgg cttgcccagg caagctgttg accgtgagac 5340 gtgaggcagt ataatcatgg gtaccgagat ttccctagct ctttgccagc ccttgtctat 5400 aggtgggcgc ccacatccca gcgcatatgc catatctccc cacatctccc cgtatctccc 5460 cgtatcctcc tagttaaagc agtccgccct cctgactggt ggatgtgccg cgtggatgtg 5520 gccgcgcgtg tgtggcgact gatcgacttt ttccctgtgc gtactccacg caggctaccg 5580 tgcgcggaac atgcgcgggc ttacgccgga atgccgtctc ctcttcacgg aggtcctccg 5640 ctcggctacg gttttgaacg tgtggggcga gcagctgctc atgccctttg gcggcggagc 5700 cgtgcgcgcg cgggagggtc ggctttcggg ggtgcgcgcc caacaggtgc agggaatggg 5760 agcggggaac ctcctccggt atctgcagga ggcggacgcg cgagcagagg ttcgccgccg 5820 gcaccccggg tgggagccga gtgccaagct ttggcacaca aactgcctgg agaatggctt 5880 ctccgtgctc tgcatgctgt gtggcggcgt gaagcccgag ctggtgcagt gcttggcggc 5940 gctccgtcgc gcggacatca ccgagcttct ccgccacgat ccgaagaccg catggctgac 6000 tgtccgccgc aagaagagga caaggcgcgc ccatccaccc aacccccccc gcccccacct 6060 ctcccagcac agcacagcct cccggcgcca ccctgctcca cagctcgaag tactctgcgg 6120 cgtccagcga cggcgcggga ggcaccgccg tggctgaaac gtggtacgac acgtccaaca 6180 tcctcccctc cgccgagggc gtgcgtgcct tcgagaggct gaccgagcag accgcgctga 6240 gcaacgccac ctcagggaac gagcgcgtgc gatcaaactt tgccaacaaa ggtctcggct 6300 cggaggccgg agccgcaatg cgcgggccgt gagtgcgtga ggacagcaaa atgtgtttcc 6360 tcaaatattt tggcacgtca gactgaccaa gacacatttt agactgacca ccgctgtctc 6420 ggcacacgca gctgtgagcg tcgcgcgcgc gtgtcctcaa gtgtgtctgt tcagagacgg 6480 cacagctgag agaccgctgc cctgatccac aggccgagcc ggggacggcg ggggcggcca 6540 ctgggcaccg tcgtgcgccg caagctgccc cagtcacgtc ggcccggcgc ctcgagggag 6600 cgccgcctag aggagcgccg ccggccacgc gcctcgagcg acggcgccgt cccgactcgt 6660 cgccgcgacg acgagagagg agcgctgcct ggcgcgcagg cagcgagcgc gctcgaggtg 6720 accgagctga tccgcgtgtg gccgccgcta cgcgacgccg catctcgcac ggatgacgcc 6780 agaagctcgc acgacggcgc gggagcgcgc ggctggcggg agtgcgtgcg atagggtgcc 6840 agaaggccgg ccgagcatcg ccagcgcggc tcgaggccgt tgcccgggcc ccgcggcggg 6900 tcgaggaggc gctcgcggag gcgacaggag cgcgcggcac agctcccaac tgacatcgat 6960 ctcggacctg aggagaggag gaggcgggcg tcggtgcacc ctgagggcgc ctgcaaagcg 7020 gcaggtccga gatcgatgtc gtttgggagc tgtgaggtgt cggagagctc tcgaggtctc 7080 gacgggcagc ctgacccctc tc 7102 // ID Copia-6_PSo-LTR repbase; DNA; PLN; 199 BP. XX AC AAQY01000789; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PSo_; KW Copia-6_PSo-I; Copia-6_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-199 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000789; Positions 106548 106746. XX SQ Sequence 199 BP; 51 A; 42 C; 61 G; 45 T; 0 other; tggaatgcat atctgaaacc tggtcatggc agttgagacg aaagctgaga agcagagaaa 60 agcaggtcgt tgtatgggaa cgggtaggaa cccgtgagtg ttggtaggag ctcaggcagt 120 gagccgctaa cgctccatca attcagtctt cattttatcc ttcgtaggcc caaggtgctc 180 ggaaccggtg caggttcca 199 // ID Gypsy-12_PPa-LTR repbase; DNA; PLN; 406 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PPa-I; KW Gypsy-12_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-406 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 974-974 (2010). XX DR [1] (Consensus) XX SQ Sequence 406 BP; 90 A; 80 C; 144 G; 90 T; 2 other; tgtaagggtc taaaagatct gacccttgca cttgttgagt caaaaggtaa ttggagcccc 60 ggcgatccct aagcccatgg aaaagccgtg gcgaggtggc gatggagtgg wtgggcgggc 120 cacctccctc acaccgaggg accacatgat gcgggggcag cgtgcggtgt gaggggaagt 180 attktggagt ccctgtggag tcctgggtga tccggaggag tcatgaggac ttaaacggac 240 caccgaggtt tagcttgctg gtggcatgaa tctggagtta cagggaccag actgtggtga 300 cagtatctgg gagtagggtc cagttcacga ggctagtatt aacggggttt cttgttggta 360 gtgtttcagg gtgaaatcga gtgacgagca gaggaggtcc gttaca 406 // ID Gypsy-22_PR-LTR repbase; DNA; PLN; 204 BP. XX AC AAQX01000202; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PR_; KW Gypsy-22_PR-I; Gypsy-22_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-204 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000202; Positions 66097 65894. XX SQ Sequence 204 BP; 60 A; 51 C; 58 G; 35 T; 0 other; tgatctgtcc gggtgcctgc atctagcacc cgacagctgg aggtccaggt tcgcaactgt 60 gatcgcctag aggtccagac ggccgattca gatctgcagc tttcccgtag gagaggtagc 120 tagaaaaaga aagacaaacc ataaaaagca aagacagttt ggaacttgct cagcagagag 180 caagcggctc ggcagagaac cgca 204 // ID Gypsy-1_PIT-LTR repbase; DNA; PLN; 287 BP. XX AC AATU01000341; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PIT_; KW Gypsy-1_PIT-I; Gypsy-1_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-287 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000341; Positions 30744 31030. XX SQ Sequence 287 BP; 63 A; 68 C; 72 G; 84 T; 0 other; tgtagcgtgg ggctcaggtt gaaagccttg ccctcattgc actttggagt gaatgcaagt 60 tgcatctggc agtccttgca gttgcagttg caactactag gctagagcct ctggcagtgc 120 caggaggctg tcctgctcgc tgtagcgata acaggatttt gtaaacagag tagtctagtc 180 actatacctt ttgctttcta ctcagtaagc aatacaatcg gctaaacgtt cggaagtgcc 240 agcttcccta actgtgtcta ctgttttcgt ctcgtggacg tactaca 287 // ID TY1B repbase; DNA; PLN; 50 BP. XX AC M24990; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE S.cerevisiae Ty1 transposable element D15 DNA, segment 2. XX KW Copia; LTR Retrotransposon; Transposable Element; TY1B; KW Ty1 transposon; mobile element. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-50 RA Eibel H., Gafner J., Stotz A. and Philippsen P.; RT "Characterization of the yeast mobile element Ty1."; RL Cold Spring Harb. Symp. Quant. Biol 45, 609-617 (1981). XX DR GenBank; M24990; Positions 1 50. XX SQ Sequence 50 BP; 9 A; 5 C; 9 G; 27 T; 0 other; ttttccatag tatggaggct tttttttttc tgtgaatgta cgtatatttt 50 // ID Copia-3_HAE-I repbase; DNA; PLN; 4138 BP. XX AC ABWE01000125; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_HAE_; KW Copia-3_HAE-LTR; Copia-3_HAE-I. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-4138 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000125; Positions 46952 51089. XX CC Positions [1341-1871] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 1224..2828 FT /product="Copia-3_HAE-I_1p" FT /translation="MGHPNKDAMIKIQRATSGIPMVKPGIETLCGGCMKGK FT QTVTPFPSRTLTKSSSVLELVHTDVMGPMRTLSKGGAKYVLTLVDDYSRYV FT VAYLMKNKSEVPGKLKGFRAFYENQWGERLKCLRSDNGTEFVNKTIDEVCR FT RNGILNQRTVPYSPQQNVVAERMNRTIMEKARSMLHYKVVSAVWWAEAVNP FT AVYLINRSTNATHPESIPYELRFKVKPHMEHLRVFGSEGYAHIDDVRRTKL FT EPKSFRCRFLGYAENTKGYRLSDLDASTIELSRSVKLDEREVGGIYDTQLP FT QQETVIHVTKDSITESVSLFEEHQQTVDEPMEEAVDEPVLDVEMNEVELDL FT EPRQPQLPPPEPTSTGQELTEYHPRPQAFYEDRMVFNPDAERSRRTREPMF FT LLEDGSNADDEQHSDWSDGLPSPKRARIDEEGLLTEAVLAYAASIDGVPDT FT PNTYAEAIASDEAAEWRQAIDAELQSHARNQTWTLVPHGTSTRPIGCRWVF FT AKKRDENGRVIRYKARLVAQGFKQKFGIDFLKPTRRWQT" XX SQ Sequence 4138 BP; 1102 A; 895 C; 1210 G; 931 T; 0 other; ggttaacagc cgcaaggcca ctgacgctca tgatatgacc tccaaacgcg ccgaagtcct 60 cctcgggagt gggaattact ttcactggga gtataacatg tgcatgacat tggcacgcaa 120 gggtctactg gcgcatgttg aggttgtgaa gcccaagaac gacgtcaccg aggcgtggct 180 cgttagtgac gcaatggcgc ttggtattat cgctcaaggt gtggagatac agcatcagac 240 caagattcgg tctgcgacgc gtgcgatgca tgcgtgggtg tgcttcgaga cttctataac 300 ggttccacgc tccataaccg tgccacgatg acacgtcatg tccatgcgtt caaaaatgga 360 gagtggaaga ggtatggccc agcatctgga cgtttttgac gagttggtcg tcgggttgca 420 gacgctggga gagattgtcg atgaagcgag acagctagtg gtccttctaa gcagtctccc 480 gtccgagtac gacatgattt catccattat agagaacgcc aaggacgtgt ctctaattga 540 agtgaaggag aagctgctaa aggagcatga gcgtttggag aagaaggaca ccacgatgga 600 gaaggcgttc caagccaatg ggaacgctgg taagttcaaa ggtggtcgag ctaatgatcg 660 taagaggaac gctccacgga agaaccgtgg tgcttttaag ggcaagtgct tcgggtgtga 720 ccaagttggt catatgaagc ggaactgccc gagccagaga ggcggtaacg gtaacgaagc 780 tgtgttctcc gtgggcgagg aacacctgaa tggttggttg atcgacagtg gtgctacgtc 840 gcacatgact ccgcaccgtt ccgacctgtt cgactatggg accatggata ccaacgttga 900 agtgactatt gccgacggca agaagttaaa ggttcatgga agatgaacgg tgaggctaag 960 cggtcttaac aatagacgca tcaagatgat ggaagtcttg tttatcccat ggcttggcag 1020 acgcctgttg tcggtcggac gactcgcggt acgcggtttg aacgtaaagt tgcaacgttc 1080 gtcgtgtgta atctgggaga cggcagcgca attgatgtgg gggaaaggtg gggaaagcgt 1140 tccttcttga ctgtcagcaa gagcaagcac ggtttgtgca gtactcggga gcagatagtg 1200 agtgggagct atggcacgcc cggatgggac acccaaacaa ggacgcaatg atcaagatac 1260 agcgtgctac gagcggtata cctatggtaa agccaggtat tgagacctta tgcggaggct 1320 gtatgaaggg caagcagacc gtaacaccat tcccatctcg gacactgaca aagtcatcaa 1380 gcgtgcttga actagtacac acggatgtga tgggccctat gagaacgctt tcaaagggtg 1440 gtgccaaata tgtgttgaca cttgtggacg actactcacg gtatgtagta gcctacttaa 1500 tgaagaacaa gagtgaagtg cctggaaagc tcaaggggtt ccgagcgttc tatgaaaacc 1560 aatggggtga acgcttgaag tgtctgcgtt cggacaatgg aactgaattc gtgaacaaga 1620 ctatagatga ggtgtgccgc cggaacggta tcctgaacca acgaacggta ccgtacagcc 1680 ctcagcagaa tgttgtagcg gaacgcatga atcgcacgat tatggagaag gcacggagca 1740 tgctacacta taaggttgta tcagctgtat ggtgggcaga agctgtgaac ccagccgtgt 1800 atctaatcaa ccgttcgaca aacgcgacac atccagagtc gataccatac gagttgaggt 1860 tcaaggtgaa gcctcatatg gaacacttac gagtgtttgg gtcagagggg tacgctcaca 1920 ttgacgatgt tagaaggacg aaattagagc cgaagagttt ccgctgtagg ttcttgggtt 1980 atgctgagaa cacaaagggg taccgtttat ctgacttaga tgcttcaaca atcgagctgt 2040 cacgttcggt caagctggac gagcgtgagg tgggcggtat atatgacacg cagttgccgc 2100 agcaggaaac ggtgattcat gtgaccaaag acagtatcac cgaaagcgtt tccttgtttg 2160 aagaacacca gcaaactgtg gacgaaccca tggaagaagc tgtcgacgaa cctgttctgg 2220 atgtggagat gaacgaggtg gaacttgatc tagaacctag acaaccccaa ttacctccac 2280 cagaaccgac ttcaactggg caggaactga ccgagtatca tccacgacca caagcatttt 2340 atgaagatcg catggtgttc aatcccgacg cggaacggtc gaggcgtact agagaaccga 2400 tgttccttct tgaggatgga tcgaacgctg atgatgaaca gcactccgac tggagtgatg 2460 gacttccatc accgaagcgt gccaggattg acgaagaagg cttgctcact gaggcagtac 2520 ttgcatatgc tgcgagtatt gatggtgttc ctgacacgcc aaacacttat gcggaggcta 2580 ttgctagtga tgaagcagct gaatggcgtc aggcgatcga tgcagagctt cagtcgcacg 2640 ccaggaacca gacgtggact ctcgttccac atggaacgtc tactcgtcca attggatgcc 2700 gttgggtttt tgccaagaaa cgcgacgaga acggtcgagt gatccgatac aaggctcggc 2760 tagtagctca agggttcaag cagaagtttg gaattgattt tttgaaacct actcgccggt 2820 ggcaaacatg aactcgattc gtgttgtact atctgtgtgt gtagcataca gctacgtcat 2880 ggaatagctg gacgcagata ttgcgttcct taacagtggt ttggaggagc tggtccacat 2940 ggacgttccg tttggcgtga agaatgctaa aggcatgatg tgcaagatga aaaggctatc 3000 tacggtttga agcagacggc gagtgcttgg agaagataat tcgtcgtgtg tttttgaaat 3060 agggtttcaa aagctgtggt gcagaccaat gtgtctatgt taagcgtact cgaaacggct 3120 ttgtgtacgt gtgcctggac gtggacgaca tgatcatcgc tgccaaaaca agcgatgaga 3180 ctcgtgaagt caagatggcc cttaaaaacg ccttcaagat gaaggagtta ggcgaggtga 3240 gatttatctt gggtatggag attttgatca cgacacaaac gccaaaatgc tcatgatcaa 3300 gcaaacccaa tacattggtg acgtggttaa acgattcaac cagcagaatg caaaatcggt 3360 tgagaaccct tgcgcttccg acatgatgct gtcgaagttg cggtctccaa ctacaaagga 3420 agaatgcgct gagatgaagt cacgaccgta tcgttctttg atcgggtgtc tgatgtacat 3480 cacgacttgt acgcgaccgg acatagcatt cgtggtgacg cagttgtcac gcttccttga 3540 gaaccctgga acgcaacatt ggaaagcggc tattcgcgtt cttcgatact tgaatcgact 3600 cgtgagcacg gcattgtgta ccacggaggt tcgggaacgg ttattgccga ggcgttcacg 3660 gacgcggact ggggaagtaa cactaatgat cgacgttccg tatctggagt catggtactg 3720 attgggaaag ctcctgtggt gttcaagtcc aagtaccaga ggaccgtcgt ctcagttctg 3780 cggaagtcga gtacatggct ctaagccttt gtacgcaaga ggtactttgg gtgcgcgcca 3840 tgctgaagga catgggtcgc gagcaagtgg gaggaacgcg cgtctgggaa gacaaccaag 3900 gtgcaattgc attagcacgt cacgctggat atcacgctcg gacgaagcac gtggatattc 3960 gccgtcactt cattcgcgag aatgtgaaac gcggaacact caaggtcgac tacgtggata 4020 cgaaaaacca actagcggac atgcttacca agggactggg gaccaagacg ttcaagttcc 4080 tgcgtgagca agtggaatca agagcaaggt cactaagcag tagcggtgag tgggagtg 4138 // ID Gypsy-17_PSo-LTR repbase; DNA; PLN; 331 BP. XX AC AAQY01000206; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PSo_; KW Gypsy-17_PSo-I; Gypsy-17_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-331 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000206; Positions 9675 9345. XX SQ Sequence 331 BP; 82 A; 85 C; 95 G; 69 T; 0 other; tgtggcgctg tgaatcttca aacacaccca gcgactggtg gcagcctggc gccaggatgc 60 gatccagtcc ctcaagattc tactcaggac gctagcaagg taaaggggaa tctggcagaa 120 tcccaagact caaacggtat caaacaagaa gctccggtgc ccagcacgat ggctggactt 180 caaggtgcat ggctggatcg caagacacca aggtacccag taggtcgcca agaggggcta 240 gcagcagggt gcggagggat agctagcgcc gctttcatgt tttgcgttgc tctcagaatt 300 caatttgctt tctcaagtgc attggtcgtc a 331 // ID Copia-4_PR-LTR repbase; DNA; PLN; 262 BP. XX AC AAQX01000579; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PR_; KW Copia-4_PR-I; Copia-4_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-262 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000579; Positions 852 1113. XX SQ Sequence 262 BP; 76 A; 63 C; 68 G; 55 T; 0 other; tgttggagca tcatcagtga tgctactgct tacggcgcaa gctgtgccaa gattcacaaa 60 tatgacgcga gttcaaggta gcgagctgga taagggatgg gcgacatctg gtcaagcggt 120 gggagagctg acacgccctg aaggacgata caaggacaca tctcggctgg gcgacaaaga 180 aggctaacaa ggagcaccat acggactagt ctttatcaat caatcacttt tcatttctcc 240 acttcaagcc caagttccaa ca 262 // ID Gypsy-28_PSo-I repbase; DNA; PLN; 6453 BP. XX AC AAQY01000885; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_PSo_; KW Gypsy-28_PSo-LTR; Gypsy-28_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6453 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000885; Positions 144644 138192. XX CC 'AAAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 3520..5163 FT /product="Gypsy-28_PSo-I_2p" FT /translation="MKYALVKFRVHLLGSKPFVIFTDHASLLSATQSPHLS FT QRMARWLSFFAEYNFEVKYKPGRQNALADALSRRPDYELAHVTSLTPSITD FT MIRAAYARDECCVALLRTLGSAEFRDSDIFQVLGTRLDMSTADHPQTDGQT FT ERANRVVEDVLRSVCAETPKRWSAVLPLVEFALNNAVHASTGFTPFYVNGL FT THPRVPLTPSRSDSGLGRGELADRLADVSPRDVRKELDDFLSIRLNVLRHV FT RDAMADSQDVQKEQADARGRGNMENFEVGDLVLLNAKKLPTHAVSAVFKTK FT LRPRFIGPFKVVANKGLAYTLKLPKKMRTHPVFYVGLLKRYRDPSQVSAEA FT LAPAPLEGQRPAAAAPARQPARAGSGLGRAAPEQSAPTDPSGHPVDLQDRR FT VDAQQRGARRRSAQTASRPSRGGRAHARLDIPARTTALAQPQGLAAARRPP FT ALLDEHGELHFHVELLLKRRRHRGHTQYLVKWRGEPPSWEYEVPLRQDCPD FT AVDAFDREHPRHSPSSKPTRRSPRASRRWNETMTHPSECSSAKRELAPQAW FT T" XX SQ Sequence 6453 BP; 1233 A; 1821 C; 2022 G; 1377 T; 0 other; cttggtagca ctcgtagtca atccctcacc tgagtctgtt agactgtacc tctgtgagga 60 tggagcaagc tgcgttcgcg aatttggccc ccggccagca ggaggcgctt agaaagcata 120 tgtctctgtt ggtcccggag ggcgtggcac accttgcctc gcaaggccca gacgcgatga 180 acgcgcgtct cgaggcgttc tcaagttacg agaatgctct gttggagcac atccagcaga 240 ggatgagcgc gacggcgcct gcagcggcgt cggccgcgtc gcaagccgga tcgactcgac 300 ccaagccact catgctgagt gtcaagccgt tcgagggtct ggaggctgag aatctcctgc 360 tctggatccg cgagatcgaa atggcttcaa tcggagcacc agcgccttcc cgacgtggga 420 tgagctgaag cgacagctct cacgagtgtt ctcgccgccg aaccacgcat accgcgtgcg 480 ttccaagttc ctggcttgcc gtcaggggaa aaaggacttg gtggactacg tctaggagct 540 acgcacgctc atcgccggca tgttcgctga accgctgcct gagtctgtca ccgtcacggt 600 gtttatggat ggtctcagga ccggagtggc tcgcacggaa gtgttccgca gtcgtcctac 660 ctcgttcgag gaagctgtgg ccgtggcgtt aagcgccgag cacaatttca agtccgctcg 720 catcggctgg agcgcgccac aggcgagtac gtcgaacggt cctgaaccta tggacctcag 780 ctacgctgaa agtgacgaag ccgagcttcg ggctgctgag cagcgccgcg gtatccgccg 840 atgctacacc ggcgacagca ccgagcactt gcggccgggt tacccgctgc gcaaacagca 900 atctgctcgt tcgagcggcc ccgctttgag ccacaaggct ggttcgtcgc ggggaaatgg 960 cgactcccag taggcgcggg gcggcctact ggggaagaac taggttctgt agtgccttag 1020 ggagggggag gacaacggag tctagtcccg aagagagccg tactctaaaa cacagaacgt 1080 aaatgcaagc cgggcttgct ggtcgtcatt gcgactgtga agggcttcga gaagccgtgg 1140 acgatcttga ttgattcggg ggcgtctggc aattacgcca ggcgtttctc cgtggagggc 1200 agcgagttat atgctgtggc gcttcgcgcg cgttctcgtg acatagtcac tgtccgtttg 1260 gcgacgggca ctcgtgtcac ggtgcccaag gtccccatgg acttgggcgt caagttcctt 1320 gactttgaca gcacggaacg ctgtttggtc ttggacctgg attcaaggta tgacttcatc 1380 cttggcatgg cgtggctgga acgccatgag ccttggatcg actggaggtc gaaaacatta 1440 ggtgctacgc acatctctcc tggtggggct ttggcgagtc atgaacccac ctctgccagg 1500 acacagaagc gcttttggcg cgagcactgg accgagtcgg tcgctgtgct ggacatcggc 1560 gtgtccgagt tggtcgacaa cgccgttgtt ggagaagcac ttcccggagt ggacgcgacg 1620 tcgtatacgt cggccggtcc cgagcaccgc tcgtcggacg tttgtggggc ggcacgtact 1680 ccgctagttc aggggcgttt aacgcctggc gacggtatgt cgcggcactc ggagctcggc 1740 ccccctcgtg cgcgtgggat ggcacgtact ccatcgactt tggggcgttc gacgctcggc 1800 gacggtttgt cgcggcccgt tgggcatggc cgtgcggggg acaaggcgga gcgtgtctcg 1860 cctggtgctt tcatgaccaa ggattgccgt gttggcgatt cctcgctggc gtccacgatg 1920 gacggaggcg cgttgtcgcc tggatgtggt gacgacgctg tcgccacgtc gccctcatcc 1980 tctcggcctc gagcgcggag gaggaggagg aagagacgca gagcgtctgc ggcgtcgagc 2040 gtgtcgagcg atgaagctcc acgcgagtgc tgcgagcagc tatacacgct cgtgaatggg 2100 ctgacgggag acgtatcagc cttgaagctc ttccctccgt gagtgctctc ctcgagcttg 2160 aggagatgtc cgtcgccgag tttggcgagg ccttaaaggc gggcgatcta gccgaagtgg 2220 tcatgatacg accagaagaa gagttaaact cgtcgtcact attggacgaa gcggtcctgg 2280 aggacactaa gcaggcgctt aataaacgta gtggctcagc cgtcttgaag gatccgtcag 2340 atccgttgta cccgttggta gtggagttcg gagacgttgt ctcgaaggac ccgcctatgg 2400 gcctacctcc tgatcgaggc gttcgtcatg aaattgactt ggttccggga accaaatatt 2460 gcgtcacacg ccagtggcca cttcccaagg aacagtgtga cgtcattgac gcctaatttc 2520 gtgccaagaa cgaagcagga ctggtgcgcg aaagcaagtc cccgcactcg acgccgacat 2580 tctgtgtcag gaagccgaac ggcaagtggc gcattgtaca tgctttcaac aagcttaacg 2640 cggccactat cccggcacaa acgccgatac ctcgcaagga tgttcttcag aacaacatgg 2700 ttgggtgcac gttgtacagc gctctcgact tggtcgatga ctactatcag ctgctcatga 2760 gagcgagtga tatccctctc actgcggtga gtactccgag cggcatgctc tgggagtggt 2820 tggttatgcc ccaagggctg ccaaacgcac cggcaacgtt taatcgtctt gtgacgcagt 2880 tgtttcggcc gcatcgcgca tatgcgcaga cgtactttga cgacatcttc gtccacagtc 2940 gtgtggagca cgggaagtcg gatatggaga accacatcga ccatttgaga gccgtgctcg 3000 agtgtaagcg agcgaacaag ctctacacca atgccgacaa gtgcatcttc ggcgctgaag 3060 aaattccctt tctggaatgc ttcattggga agcgtggtct ccgagcggac cctgccaagg 3120 tcaaggccat tgtggactgg ccggttcctg cgaacccgaa agacctgcgc aagtggctgg 3180 gtctggcaaa ctatttgcac aagtacagcg agaattatgc tgagttggca cagccattgt 3240 ctaaccttct caagaaggat gctgaatggt gttgggatgc cgagcagcaa agcgcttttg 3300 aagcagtaaa ggaaagcctg cttcaggcac cgaccgatac tggcactgcc agaccccgat 3360 cggccgttca gcgtcgtgtg tgacgcgtcc gattttgcca ttggctgtgc actgcttcaa 3420 gcagacgccg atgggcgtga gcgggtcatt gcgttcgagt ctcggcagct aaaggctgct 3480 gagaagaact atcctgtcca tgacaaggag ctactcgcga tgaagtatgc cctcgtcaag 3540 ttcagggttc atctgctcgg ttccaagccg tttgtgatct tcacagacca cgcgtcctta 3600 ctctctgcga cacagtcgcc tcacctctcg cagaggatgg cccgttggct ctcgttcttt 3660 gcggagtaca acttcgaggt gaagtataag cccggtcggc agaatgcgct ggccgacgcg 3720 ttgtcacgca ggcctgatta cgagctcgct cacgtcacga gtctgactcc gtcgatcact 3780 gacatgatcc gtgccgcgta tgcacgtgat gagtgttgtg tagctttgct acggacgctg 3840 gggagcgcgg agtttcgaga ctcggacatc tttcaggtgc ttggcactcg tttggatatg 3900 tccacggcgg atcaccccca gaccgatggt caaactgagc gcgcgaaccg cgtcgtcgaa 3960 gacgttcttc gcagtgtctg tgcggagacg cctaagcgct ggagcgcggt gctccctctc 4020 gttgagttcg cgttgaacaa tgccgtgcat gcctcgacag gcttcactcc gttctacgtg 4080 aacgggctta ctcaccctcg cgtcccgttg acgccgtcac gtagtgactc tgggcttggt 4140 aggggagagt tagccgatag gcttgctgat gtcagccctc gtgatgttcg taaggaactg 4200 gacgacttct tgtcgatccg tctgaatgtc ttaaggcatg tgcgagacgc aatggctgat 4260 agccaagacg ttcaaaagga acaagctgac gctagaggcc ggggtaatat ggaaaacttt 4320 gaggtcggag acctggtgtt attaaacgct aaaaaactac ctacacatgc cgtttctgcg 4380 gtcttcaaga ctaagctgcg tcctcgcttc atcggaccgt ttaaggtcgt ggccaataag 4440 ggccttgcgt acacgcttaa acttcccaag aagatgcgca cacacccagt gttttacgtg 4500 ggcttgctca agcgttaccg cgacccgagc caggtgagcg cggaggcgct ggcgccggca 4560 ccgttggagg ggcagcgccc cgctgcagct gcaccagcac gtcaacctgc ccgcgcagga 4620 tctggacttg gtcgtgcagc gcctgaacaa agcgctccaa ccgacccatc cggtcatccg 4680 gtggatcttc aagatcgtag agtcgacgct caacagcgcg gagcgcgtcg tcgttctgcg 4740 caaactgcct cccgacccag tcgcggtggt cgcgcccacg cccggcttga tattccagct 4800 cggacaactg cgctcgcaca accgcagggt ttagcggcgg ctcgccgacc acctgctctg 4860 ctcgatgagc acggagagct tcacttccat gtggagctgc ttctgaagcg acgtcgtcac 4920 cggggtcata cccaatatct ggtgaagtgg cggggcgagc caccgtcgtg ggagtacgag 4980 gtgcccctga ggcaagattg cccggacgcc gttgacgctt ttgatcggga gcacccgaga 5040 cactcaccga gctcgaagcc aactcgtcgg tcgcctcgcg cttcccggcg ctggaacgag 5100 acgatgacac atccgagtga gtgctcgagt gcgaagcgtg aactggcgcc gcaggcgtgg 5160 acgtagacgc acggcgcgga gtatctcgaa ccgcacgatt ggcgccttgg gcgcggggtc 5220 tttgaccata gcgattttgt tggcgggcca tgttcttcgc ccacatgaag cggaggcgcc 5280 gttcaagaag aacatcttgc tttctatagc ttgctcgaag agcatcaatt gacggcaact 5340 tacggaaatt ctcaacccag gcctggaact ggccatcatc ttcatcttcg gtctcaccgg 5400 gaacgaggac catcgggatg cgctgcatct gaggcactga ctggtcgtgc agttgaccat 5460 ccagccgggc gcaatactcc gagggagtgg tctgctgcgg cgtcagatag cgctggccag 5520 cgcgaggcgc tcgtctacat ctgccgttgt cgaggctctc ggccctacga tgtatgaacc 5580 cagcaggcct ttggcccagt cgttcgcgac tttcaatgga tcttcgctgc ttgtaaagcc 5640 atagtctctc cgagaggggt tcacgatagg caacgcctcc ggtatgttcg agcgcgttgg 5700 cgcggtgcgc tcttcgagct gacggcgctg agcctggtcc agtgggttgg agactgtgtc 5760 gggatccgtc ggatcatccc cgtccctcgg aggcagaggt ggcgcatggc gcagcgggtc 5820 cgggtgtaag tgcgaccccc gggtctctga ccttgggctg atgaacgagt gcagcggggg 5880 cgagcgcgag cgcgagcgcg aacgtggtgt ccttgaagag ctgtgcccac tccgcggcga 5940 tctgccatcg ccttccgacg ggttggcatt gacctcgccc tcctcagacc cgaagagatc 6000 gtcgtacgca ttgcgcacac gccttggcgc ctgctcgcca gccgggcttg agctatgctc 6060 cgacatcttc gctggcggca gcttcggagg gtgcgctgca cgatacttgg ctatggaaag 6120 cctctgcggg gtgctgggca cgggctcctc ctttgcgctc ggcgtctgtg acgactcggc 6180 ggctggctcg acggacgggc tgtgccctgg ctgcgtggcg ctcgtgcgcg ggccttgtga 6240 ctgctgatct gtagacccgg gggctgcgtg catgcgttac acgcgcagcc gattcgacaa 6300 tgaggctctg tgagcacaag tcgaactcgc gatgggtctg gaccttaact ggaagatcgg 6360 aatggtccgt gcttttgaag ctggcgtgtt cgccgtcttg atgggggaga gtgtaacggg 6420 gttacacgga ggttaccctt ttggttaccc ttt 6453 // ID KANGAROO-1_VC repbase; DNA; PLN; 8903 BP. XX AC AY137241; XX DT 16-MAY-2005 (Rel. 10.05, Created) DT 16-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Volvox carteri retrotransposon kangaroo-1. XX KW DIRS; LTR Retrotransposon; Transposable Element; KW DIRS1 retrotransposon; gag; reverse transcriptase; RNase H; KW KANGAROO-1_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-8903 RA Duncan L., Bouckaert K., Yeh F. and Kirk D.L.; RT "kangaroo, a Mobile Element From Volvox carteri, Is a Member of a RT Newly Recognized Third Class of Retrotransposons."; RL Genetics 162(4), 1617-1630 (2002). XX DR Genbank; AY137241; Positions 1 8903. XX SQ Sequence 8903 BP; 1897 A; 2303 C; 3205 G; 1498 T; 0 other; gcatgttgat taagtgctcg tcctgtagtg tagtacggca agtgcggcgc gggaggagca 60 gaccggaatt ggccagagga cagtgactga tacggtagtg cgttacaaag attagctggg 120 aacaaagcgc tgaatccaga caacgctagt tcgccagtca accgtgcaag caagcgcaag 180 tcagaacgtc gtctgttggg gattttgaat tgtttaaata gtgacttact ttgtattcgg 240 gacccagctc aatagtaaag tagataaggc gatttgacgt tgctggcata tcggtcgcca 300 gtaacagcga agtgatggca gagcgcgagc aatcgcgcgg cggaggccaa gaaggcttgg 360 aggacatcct ccaacagcgg gacgaaggag gacaccagaa tggcggagca cctagttacc 420 cggagggggc cgatgcggtg agtaacagac gccagctatt gctccgcgcg gtcagactgt 480 aggcacagcc agccgccgca agttctgtta tatcaaaggc atgggagaga ccggacccag 540 ttttaaaata gcgggaaagg gatgcgccgc cgctgttgtt tgaccaggct ggattagaag 600 ctacgggtca ggcttagctt atgaagaaca cgaatctgta gaccgcgagt ggccgactca 660 gagtattagt gctcgtgagg ttgggtccgt ttccggtgga tggcgccgcg gcagaggggt 720 agttgctttg agatggcgca gcggggtctg ttatcccaac gggtccctgt cctgaaagca 780 gccaaaagcc cgcaatagcg cctaggcagg ggcacgccca ctgggggcca cgcccgggga 840 aaagaggcac ctagtcgtcg gcttcacact tcggcaggag caaatgccca aaagtaacca 900 tagcctgtag gtttttccga aggaggtctc gtgaagggcc gagctaccgt gtggagctgc 960 attctatccg gaaggccagc cccagcgggt atgctgtcgc gcggcgaagc acccaggctg 1020 atttgccttg ggccggcagg tttaggtcgc atgcatccgg aaggccagcc ccagcgggta 1080 tgctgtcgcg cagcgaagca cccaggctga tttgccttgg gccggcaggt ttagtcgcat 1140 gcatccggaa ggccagcccc agggggtatg ctgtcgcgca gcgaagcacc caggctgatt 1200 tgccttgggc cggcaggttt aggtcgcatg catccggaag gccagcccca gggggtatgc 1260 tgtcgcgcag cgaagcaccc aggctgattt gccttgggcc ggcaggttta ggtcgcatgc 1320 atccggaagg ccagccccag ggggtatgct ctcgcgcggc gaagcaccca ggctgatttg 1380 ccttgggccg gcaggtttag tcgcatgcat ccggaaggcc agccccaggg ggtatgctgt 1440 cgcgcaacga agcacccagg ctgatttgcc ttgggccggc aggtttaggt cgcatgcatc 1500 cggaaggcca gccccagggg gtatgctgtc gcgcggcgaa gcacccaggc tgatttgcct 1560 tgggccggca ggtttaggtc gcatgcatcc ggaaggccag ccccagcggg tatgctgtcg 1620 cgcagcgaag cacccaggct gatttgcctt gggccggcag gtttagtcgc atgcatccgg 1680 aaggccagcc ccagcgggta tgctgtcgcg cagcgaagca cccaggctga tttgccttgg 1740 gccggcaggt ttaggtcgca tgcatccgga aggccagccc cagggggtat gctctcgcgc 1800 ggcgaagcac cccggctgag ttgccttggg ccggcaggtt tggtcgcaag taacccggca 1860 ggcccgtcac agggggcacg ctcccgcgca gggttggatt accttgaacc cgcctgcatg 1920 gatccgcttc tggaaggcca gcactaaggg tggttgccct cgcttagcga atacccaggt 1980 tgggttgcct gaggctgttg gcctcgatcc agaggatgcc ttcacaacgc aatggaaccg 2040 cgtacaggaa agggacgagg aaggctcaga ggagggacag gaagagtcgt cagacagcga 2100 cgacgcccgc aaagaagctt catcggcgaa ggcgaatagg cgaagcaagg gtaagcggct 2160 ccgtacgcga ggacttggag tcttggcccc atccccaaag cgcgtggcgg tgacgcggct 2220 accgctgcat ggaccggtac gagtgaggcc gccgtcggag gcgcggaatg acattgccgg 2280 ggagggagta ccacggggct caaggcaggg ccagggagac ccggagcgtg aagataggcg 2340 gagcgcggcg cggtttatca ggcggtacgg catggaaggc tggatgcaac tgctgcgcga 2400 agaactccag gaagagggag agggggagca gcagcagcag ttgggcgagg ggccgaacgt 2460 ggggcctcga ggaaagcagc ccaacaacgc gggggcagcc acaatgcacc aggtggccgc 2520 tgctggcccg gtagggcagc cagcgtttta cagcgttgtc acagaaaagg acgtccagga 2580 ggctcacagc cgccgtaagg aggcacttag ggccgctcgg aaggcgctga atctcgagga 2640 ggcggaccgc gtccccaacg cccagctgtg ggcgaccgtc atggcccagg ctggggccat 2700 gacggaaggc ccatgcgggc tgcgggtggt gaaatccgcg gtatcggcga tgctggagca 2760 ggcggaagag gcggttgtag acgctttggc caatgtgggc ccagggctgg tcactgagct 2820 gcgtgcgtgc tttagtaatg caatagagcc gcatcgtcgc ggagtgctta agtttatagg 2880 tcagcaggcc aagcaggcct cgaaggagcg ctttgtaggg caggttacgg gacacctggt 2940 acagtggggc tgggtggaga cgagtctggc gacgttgaag atgcgggctc gtgatgcacg 3000 gctgcactgg ttggaggcgg cactccaggc cgtgaacgtg agcacgccga cgtttctgga 3060 gatgaagcag cgcgcctggc cggccgtgat cctgttgatg cgcgcggccc agagaatcca 3120 cgatggtcat gacaggatgg cggagaatat cctgaagcac gggggagggg acggtggcga 3180 ccgcaagctg ttgtggggcc ccggcgcagc aggggaaggg cggccgccgg gggcccccgg 3240 ccgcccagag cagaggaccg ctggttgggg acaagtgggt gggggctttc aggccccccc 3300 tcgggacgcg gggctgggag cgcctcacgc cgggggccgc ggagtgcagc gcctgggccc 3360 acctgctagc gtggtggcag cggtcaatca ggagctagac cggcggggat tccagggtgt 3420 gggctctggg tcaatctcgg agattgcgta ccgcggcaac gtggatggaa gcaaactctg 3480 cattacccac gcgtggaacg ggcgctgtgc ccgggcacag acggggcagc cctgccggtt 3540 taaacacccg gcaacggagg cagagcaagt gactcagctg gtggacgccc tggttagccg 3600 caatgaagcg atgcgcaagg tataagttgt agtcaggggc gcgggaaaca agacaatcgg 3660 cgggaagata gctgctggtg ggtcggttct gtcggtggcg gctggaataa agcccgtcgc 3720 cgtccaggtg ttggacgggc ggcttgtgac tgccttccag gactggggac agcggtgcgg 3780 atctggttac ggtagggggc agctctgcct tttggacacc taagtgtaag ctcaaagacc 3840 atcgtatctt gtttcccgcc cccaccggtt attattcggc ttataggaga cccaagccca 3900 gaggcctatg ctaaccaggt cgactgagag cacgcaggga acgtcaaggg atgatgacag 3960 gacaccagac gtgggttacc cggcagacac tcaggatggc gacggaaggg atccgaccga 4020 gttggtgtcg ttggaagatg acccttgcga agacgaccag tgggtgagtg accagccgac 4080 agggcggaaa cccagaggcg gcggactagc accggcccgg gaagggagtg cccacaacgc 4140 cgcgggtagg gaagcactcc agctgctaca ggaagcctgg cagaggttac agcgactggg 4200 tcagcaggat gcggtagatc cgcgggatga acaggagttt ctcgaagagg tcgtccgttt 4260 gctccctgac cccgaagact tccaacccgg aaggatacgg ctacatgttg cagtgtggcg 4320 agcgttcttt caggcagcta acgaaggccg gcccctaacg gacaaacaga aacagtggct 4380 agaatacctg cggggcggga tccagctgga gtgggtggcg tgcgactacc cagggcaaga 4440 actagccccg gagcggggac gcaagctagc tatagtgcgt gaaatgctgc gggtcgcggc 4500 gccggattgc gacctagact ttatgatggc gggtgaccgg ccgcgggccg tgcagtttcc 4560 taaccatcgc agcgcgactc agcaccatga gtttgttaca gccgaattga gaaaggccct 4620 ggaccgagga gtgatacggg aatggccagc cgacgcgcct tcccccacgg tagttaatgg 4680 cttgcgggtg gtggaaaaag acggcaagct gcgactctgt attaacccga tgtacattaa 4740 ctgtttcttg aggtaccggc ctgtgaagta tgaacgactg gcagaagtcc ctagctacct 4800 cttaccggaa gattggctgt acaccacgga tgacaagagc gggtactggc agctatcact 4860 ccacgaacgg gagcacactt atctggctat gcggtggcgg gggcagacgc tcttttggcc 4920 acacctgccg ttcggcctgg cgccggcctg ccacttgtac acaagcatga agctcgaggt 4980 tttccggcct ttacggcagc taggggtccg catgtctttc ctgatagacg accagatggg 5040 tgccgcgggg tcgaaggccg cggcacagtt ccagtgtggg gcggtagtac ggctgctggc 5100 agccctgggc ttcaccctca gtctgtccaa gtgccagctg atccccagaa ggcgagtccg 5160 tttcttggga atggaggtgg atgcggaggc gcaagcattc agagtaccgg acgacaagct 5220 agctagattc cgtgcgctgc ttacacagct cgaaggcgag cggctaacgg cgcggcaggt 5280 ggcgcaggtg gccggcaaaa tcatcgccat gacgcccgcc gtcaccacgg cacctctgta 5340 tgcgcggatg gtgtggcgcg tagcccggga tgtggcgtgg gacgaagagg tttgggactc 5400 ggcggaggtg ttacgccagg caggcttgtt catggagctg ctgggcaggc gcaacgggac 5460 agccacttgg cggaaaggac cagccctacg actgacgacg gagctagtcg gggacgcctc 5520 ggacagggcc ttcgcagcct tcttacctgg ggaagaactg ggtgccaaca gccgcatgct 5580 cgtgcccttc aaagcccagg aaacccagcg gctgcagcgg aatgacttta gcagcacaga 5640 aagagaactg cgggcgctgc tgtacagctt gcactggttg cgagagcagg caccgaacct 5700 gttgtacggc cggacggtgc aataccagac ggacagccaa ccggcggaat tctgcatggt 5760 tggaatgaaa ggcaacgccg cttgcctgcc catagtggcg gagatccacc gcctctgcgc 5820 cgatacggac acagatattt cagtggtgtg gtacccacgc agccgggagc agcaacagca 5880 ggcagacgcg ctcagcaaat acgaagatgg atcacagtgg atgctgaacc cgaccgtcta 5940 cgccaagctg tgggagcacc cttgcgttca cggccgcagc ccgtctctgg acgttttcgc 6000 ggacgcgcac accacgaagg tgccaggtag tttctttgcg gccaactggt gcccgggagt 6060 caaaggagta gacgctttcg cccaggattg gggttcaccg gggtggggac gccgggacgg 6120 aggggaaact gttcggcccc tgctgtacat taaccccccg ttcagtgccg tggcaagagt 6180 gctgcgcaag gtggcggagg agcggcccga ttgtgtactg atcctcccgg tctggccacg 6240 cgcatgggtg gctatcctaa ggacgctgcc catcagagca cagatgaccc tggcccacag 6300 ggagctcttc atccctggac cacaagtgcc caacgccgca aaaaggggcc ctatgacgcc 6360 ccgataccga gtacaggctg tgtatgtgct atggtagagg caagggacgg aagagccggg 6420 ggacgggagg acctagggtt aacacctggg aggtatgtgt gtgggggaga gaccgctccg 6480 cggtgtgtgt tggggctgat cggaattgtc tttgaagggt ttgggtaccg cgggagtgtg 6540 gtcgcagacg caatggcctt ccccacaata agttagtagt gagtacggat cacgcgatga 6600 cgtttaagca atgcatgttg attaagtgct cgtcctgtag tgtagtacgg caagtgcggc 6660 gcgggaggag cagaccggaa ttggccagag gacagtgact gatacggtag tgcgttacaa 6720 agattagctg ggaacaaagc gctgaatcca gacaacgcta gttcgccagt caaccgtgca 6780 agcaagcgca agtcagaacc cgcccacccg cccgtcgatg tgtggggaga ggggaggaag 6840 acgagccacg atgtgagcgc cagggccaag aggggcagca ccagcaggag gcggaagcta 6900 ggatctggga ccggagccgc gagggactcg agtgggccga gaggcgtcgg tataacgctc 6960 caggacttgg gcgctgcgaa tttgggagaa tgcgtggagc tccgcgcggg aagcgccagc 7020 ggcctgcgtg gcctggatag taccacgacg aaacccatga ggggtttgcc cgacgtagac 7080 accagcctcc tccaggtgtt tgcccacgcg catggctaac gcgctgctgg aaaacggacg 7140 ctccacgaag cgttggtgac cccggtcagt gggacggaag aggtagtcgg agattgcaga 7200 ccctgggggg gcgtcagggg catggcacag ctgccaatag agggcgaggg tgcggaggaa 7260 gcaatgtcgt ggagaagggt cggggcgcag ttccaaaggg ggggctcgac gccccttgga 7320 ggttttggtc ccgagttgtt cgatccgtaa ggaaagcgag gggtaggcac caaacgggtc 7380 cggcagaggt aggggaaacc cacggaaggg acccccaccc cgcgggtcac ggaagtcacg 7440 tagccgcagt ttgccggtgt cgtggccgcg gtagctggtg tgccacataa attggcagca 7500 caacaggtcg cgtagtagca gcagccgggt cagggaggtg gtggatgcct gaaatccgga 7560 ccagaggtgg tccatgaggg tggtgaagtc gccagggctg agtggtacgg cggcttgctc 7620 ctcatagcca cggtcggcgg cgagacgact atagccagtc ttgtaggagg acaaggcgct 7680 ggagcagcag gggttgccga tgccggtttc acggtcgtaa gtgctgccac ggcctaagcg 7740 gttaaacagt ccggagagta gacccagatg attgttgacg gtgttggggc tcgggtcgtc 7800 cacacggcgg ttggggagcc agtgcgcctc caggtagacg agtaggtcgt catcggtgca 7860 ggatagcagg gtacggccat gaggcaggga ggccagccag gcagagaggt cccgaccggc 7920 agcttcctga cgggcaatgg tttcgcgggc cagctagttg tcgcagacgg tggcggcctt 7980 cgcgagggcg acggtataaa gctggcggct ggaaggtggg tccagtacgg cggagggtaa 8040 ggaagtgggg cggacgcgtg cggccaagat ttgaggcaga gtaggctccg gcagtgcctg 8100 gcgggcagaa gaaggtaggg gaggtaagcg cgacggagag gagagacagg actcaggcgc 8160 gggcaagcct accggggggg cagcatcgga gaggccgggg gcgtgagata agtccagagc 8220 gggcgtcggg cccacggaaa gggcggaggg gttgggcccc cgaggggcag gaacggacgg 8280 aagtaaggta gttgacgagc cgaggagggg cgccccaagt agggccgggg aaggcaagga 8340 aagcctgccc ggcaccggac aggcaagggg cgagtcctgc agtaaggtag gcaaccgtaa 8400 gagagggcca gagaaaagga tgcgcagaga gagggggcgc gcaccgggta ggcagaagac 8460 acagtcggat gaggaggatt cgcatagacg aggcgtaaca acggcgaagg aggtcgccgc 8520 ttctgtggag aagcagaggc tgggtggagg cgaaggtgaa tggcaaagta gcgacgagcg 8580 aagttacctg tggcacgagc cgaactagag gcaacgcggc ggagtcttgg gaacgaggta 8640 gagaatatga atggtaggta agagagtcgg catgaggctg gaggcttacg ttttctgctg 8700 tcgatgactg cattaggtta ttttcgtact ctctactcga ttgccgtgcg agcggcccac 8760 ccgccctccc actaacagcc aaatggctga tcggaattgt ctttgaaggg tttgggtacc 8820 gcgggagtgt ggtcgcagac gcaatggcct tccccacaat aagttagtag tgagtacgga 8880 tcacgcgatg acgtttaagc aat 8903 // ID Copia-14_PSo-LTR repbase; DNA; PLN; 241 BP. XX AC AAQY01000834; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-14_PSo_; KW Copia-14_PSo-I; Copia-14_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-241 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000834; Positions 143051 143291. XX SQ Sequence 241 BP; 66 A; 52 C; 73 G; 50 T; 0 other; tgttggaatg cacattgaag accaagttga aggtcagagt tgagacccgg gcgaaagctg 60 agactaggta cctgagaaaa ttagcagagc tgagagctgc gggtcgttgc atgagagacg 120 ggctcaagcc cgagagtagt ggtaagagct gggacattca atctttttcc tttctcctac 180 tagtggtggc tccaggccgt acggaccaag aagtgcacca tccaaaaggg tactgagccc 240 a 241 // ID Gypsy-22_PIT-I repbase; DNA; PLN; 5829 BP. XX AC AATU01001592; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PIT_; KW Gypsy-22_PIT-LTR; Gypsy-22_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5829 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001592; Positions 79859 85687. XX CC Positions [4668-5156] - Integrase core CC 'CTACT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(915..2960,2964..5828) FT /product="Gypsy-22_PIT-I_1p" FT /translation="MADSAQLMHSMLAAMEKQTQLIDELRKSRQLSELKLD FT GIKLPSYEGTLKESFQLYREQVEQYFLAKGIDWKDSKLRGRILAVLGGSLK FT DGAAQWYIVKKDEVQSVEDFFGKLEEEFVPPDLQERLRDQMNDLKERHCKD FT LPDYISKFRHLITQVKEMSELDKIMYFLRGLSSSISEEVQYRRSATLTDAI FT TVALDYERSHAHRGRSDSARDKPRYRSYDSKRSKNQNDGPVPMEIDNVRVP FT SKEECMRRNLCFRCGSAAHRARQCPMQQQQTFGARRNAPRYNNTRYNNANN FT GQRREKPRMNMVLEDDDQVDTVVMDRVTMNVADVKDEADELLETVKDIRKK FT VEETYSATGETSEETGLCGAPPVDVAGVHAMQPEAKAEEHAMQSAEELETP FT ESRPTEVTMKVNAVKSEQKCNLFIKKGRINGRDVRILLDTGASTNMIKPGM FT ASNVLLSRRLQAQRFDGTGTLTPATDVKHVEAPVSMDGYFFPAMEFVEWKL FT PDSHDVIFGKPWFEDLNPQINWQTHEVQIPEKFQFNDVDGPEFSDNIKSGK FT YEQVFRVKVQLVADVEAIPDPIRKVVVDEFKDVFPEQLPDGLPPSRSVNFE FT ITLKKGAQPSNRAPFRMSKMEQEAFEEFVKDKLKKGWIEVSNSPWVSNIFA FT IPKKDPVTGMMQKRADWLRSGITKIPLRWVFDYHLNQVTVIAKIPLPLIEE FT LFDQMVGCVVYSLIDLAQGYHQMIVVKSSRPYTAFRTHKETYQWCVAPMGV FT AGMPGTWSRLMRTLFDKFDFVVVYLDDICIFSKTMEEHVEHLRAVCEVLRR FT EKLYARLSKCSFGQSEVAFLGHVVSEAGVSVDPRKTEAIAKYPTPTNRKEL FT LSFLGLAGYYRRFICDFAKIARPLRELTKQDTPWLWSKNVEEAYFHLKVSL FT QQAPTLKLPDFGRPFIVTTDASGECIGGVLSQKYGDEDHPVAFYSKKLDRH FT ERGWPTHEKELLAIKVATEKWRHYLHGRPFAGDTDNSACSWMLHHPRVSPK FT MARFLTHFSQFTFTLHHVRGKANVVADALSRPPPDGQDTEKDKEPPLPDVT FT FEVHDCDEECAKMASQTHDHMVQASMIRHLSADDLHMLLDDVDLQGESRPI FT GVPQQQINTVDYHFVSSHLGPETKKAFQQGYASDPVFKQQWSKGTDTEKFV FT KHNDLLFFKQKQGESVYRLCVPKSEKLRTDVITEFHDGNTSAHPGSRRTYL FT KAAQWYYWPTMDQDIREYVRTCETCARWKSSSQRKKGLLIPIPAPLECWEV FT VSMDFITGLPASEGYDAIFVAVDKLSKRPKYAPTYTTADAKDTAEVFFNAV FT VRHHGLPQVIISDRDPKFISDFWKSLMTLMGVKLSMTTAHRAQADGQTERQ FT NLVLEDALRCMVSYHGDDWVKHLGTIEYAHSTLVNASTKLTPFEVDTGRKV FT SNVVAEEMKDLLRKEDDVTLAEYAKNFAKERQEIVERAQKNLKEAQDRQKE FT YYDRKRRQVVFKEGDLVLLDTKNLPLKTVNKNTELKKAKLAAKKVGPFEIE FT RMINDNVAKLKLPLSMKRLNPTFNVELLSHYLTNTTDFPNRPIPKAVPLIL FT DDDTGEELYIIERLIKRRTRRHKREWLVQWHGLPRHEATWECEADIKHVSH FT WRQLLEGFKFRQGEISPGE" XX SQ Sequence 5829 BP; 1693 A; 1237 C; 1557 G; 1342 T; 0 other; tttggtagca cttccggggg agagggctcg tcgctgtacg acttcaacat caagaccagg 60 ggaggccttt gattcggtta cgtgtcacat ccgtgtgatc atatcgaatt acgtgtttgt 120 gactacgtat tgcctaaggg taatcaagtc acttcacaag ctgacagtta gcactagctg 180 gtgggtgatc gtggtgtgtt attacacatc tagccccggt gaaggctttc tagctataag 240 tagttaccgt tcttcaatac tgcactgcta ttaaatttga gcaagtctca aaccagccgg 300 tatagtcagt atagttctgg ttaccctagc aaggctaaac gtgtgtggcc caatagggct 360 aggggatgac aagggcataa aaaaaggtcg tcaaagacac gaaactgatc ggctcattcc 420 tgcggcttgc agtgaaagat cctcgccgcg cggacaaagc tcgtcacgac ctctacaact 480 ctatatccaa atccaatcgg attttagagg ctttgcgtag agacataaaa aacgaactta 540 ggagaacgtc cgaaggaaaa gaaggccatc ctcgctgaat tggaggccac caaaaaggag 600 ctgttaaaga cgcaatatcg tgtttcggtg tccgtgcaga ctcgtcttcg agagattgag 660 atccccgtcc ctgattgggt ggaaaaggag acccaaggca agaaacgtca gcgttcgacc 720 tcttcaacgt catcgacctc ttcaacgtca tcaaagaagg ccaagacctc aaaaaaggaa 780 taaccccgcc aaattaggaa gtagcatagg ctattttctt taacaggttt tctctttatt 840 ttcttttagt cattgcctct agaaattagt ttgttccaac cggtatcaag tatcaagaac 900 caagattatc agacatggca gactcggccc agcttatgca cagtatgcta gcggccatgg 960 agaagcaaac tcaacttatc gacgagctgc gtaagtcaag gcagctgtcg gagctcaagc 1020 tggatgggat taaattgccc agctacgaag gaacactcaa ggaatcattc cagttatacc 1080 gggagcaagt ggaacagtac tttttagcaa agggcattga ttggaaagat agtaaattga 1140 gaggacgcat tttggcagtg ttgggcgggt cgttgaagga tggagccgca cagtggtaca 1200 tcgtcaagaa ggacgaggtg cagagtgttg aagacttctt tggcaagttg gaggaagagt 1260 ttgtccctcc agatttgcaa gaacgtctac gagatcagat gaacgacttg aaggagcgtc 1320 attgcaagga cttgcctgat tatatcagca agttcaggca cttgatcact caagtcaagg 1380 aaatgagtga gctggacaag atcatgtatt tcttgcgtgg attgtcgtca agtatcagcg 1440 aagaagtcca gtaccgtaga agtgcaacgt tgaccgacgc aattacagta gcgctcgatt 1500 atgaacggtc tcacgcgcat cgaggacgtt cggatagcgc ccgcgataaa ccaaggtatc 1560 ggtcgtacga tagcaaacga tcgaagaatc agaacgatgg accagtgccg atggagatcg 1620 acaacgtaag ggtgccatca aaggaagagt gcatgcgccg aaacttatgt ttcaggtgcg 1680 gtagtgccgc acatcgggct cgacaatgtc cgatgcagca gcaacagacg tttggggcca 1740 gaaggaatgc gccgcgatac aacaacacgc ggtacaacaa cgcgaataat ggccaacgtc 1800 gcgaaaagcc gagaatgaac atggttctcg aagatgacga ccaagtggat accgtcgtca 1860 tggatcgtgt aacgatgaat gtagctgacg tcaaagacga agcagatgag ctactggaga 1920 ccgtaaaaga catccgaaag aaggtagaag aaacctacag cgctacagga gagacgtcag 1980 aagagactgg cttgtgcgga gcaccgccag tagacgtcgc aggtgtgcat gcgatgcaac 2040 ctgaagcaaa ggcggaagag catgcgatgc aatccgcaga ggagttggaa acgccagaat 2100 cgcgaccaac cgaggtgact atgaaagtca acgctgtaaa gtcggaacag aagtgtaatc 2160 tgtttatcaa gaaaggccgc atcaacggca gggatgtccg aatcttgctg gacacaggtg 2220 ctagcacgaa catgattaag ccagggatgg cgagtaacgt gctactgtcc agaagattgc 2280 aggctcaacg ctttgatggt accggtacat tgactccggc cacggatgtc aagcacgttg 2340 aagcaccagt gagcatggat ggttatttct ttccagcgat ggagttcgtg gaatggaagt 2400 tgccagattc tcatgatgtt attttcggga aaccctggtt tgaggacttg aatccacaaa 2460 taaactggca aacacacgaa gttcagatcc cagagaagtt tcagttcaac gatgttgatg 2520 gaccagaatt ctcagacaat ataaaatctg gaaagtacga acaagtgttc cgggttaagg 2580 ttcaacttgt agcagacgtc gaagcaatcc ctgaccctat tcggaaggta gttgttgacg 2640 agttcaagga tgtgttccct gaacaattgc cagacggttt accaccgtcg cggtcagtca 2700 actttgagat tacgctaaag aaaggagctc agccgagtaa ccgcgcaccg ttccgtatgt 2760 caaaaatgga acaggaggcg ttcgaagagt ttgtcaagga caaattgaag aaaggatgga 2820 tcgaagtatc gaattccccg tgggtttcga acatctttgc aattccgaag aaggatccag 2880 taacagggat gatgcaaaag agagcagact ggctacgtag tgggattacg aagattccgc 2940 tacgatgggt ctttgattac tgacacctta accaagtgac ggttattgca aagattccgc 3000 tgcctttgat cgaagagtta ttcgaccaaa tggtgggatg tgtcgtttac agtttgatcg 3060 atctcgcgca agggtatcat caaatgattg tggtaaaatc aagccgaccc tacacagcgt 3120 tccgcacgca caaggagacg taccaatggt gtgtagcacc tatgggagtg gcaggaatgc 3180 caggaacatg gtcacgtttg atgcgtacac tgttcgacaa gttcgatttt gtcgtcgtgt 3240 acttggatga tatctgcatt ttttccaaga ctatggaaga gcatgtagag catctgcgtg 3300 ccgtctgtga agtgttgcgt cgagagaaac tgtacgctcg tttgtctaaa tgttcgtttg 3360 gacagtcaga agtggcattc ttaggacacg tggtgtctga agcaggcgta agtgtagacc 3420 cacggaagac tgaggcaatt gcgaagtacc caaccccgac gaacagaaag gagctattga 3480 gctttctggg tttagcaggg tattatcgtc gatttatatg cgatttcgca aagattgcgc 3540 gtccgttgag ggagttaaca aagcaagaca caccgtggtt gtggtctaag aatgtggagg 3600 aagcatactt tcatctcaag gtttcgctgc aacaggcacc tacgctaaag ttaccagact 3660 ttgggcgacc gttcattgta acaacagatg cgtctggaga gtgcattgga ggggttttat 3720 cgcagaagta tggcgatgaa gatcatccag ttgcgttcta ctcgaagaag ttggatcgac 3780 atgaaagagg ctggccgacg catgagaaag aactcctagc tattaaagtg gctacggaga 3840 agtggagaca ctacctacat ggccgtccgt ttgcagggga tacggacaat tcggcatgtt 3900 cctggatgtt gcatcatcca cgagtgtcac caaagatggc taggttcctc acgcatttct 3960 cgcagtttac gttcacgttg caccatgtta ggggcaaagc gaatgtagtt gcagatgcac 4020 tatcccgtcc tccaccggat ggacaggata cggaaaagga taaagaaccg ccgttacctg 4080 atgtgacctt tgaagtccat gactgtgatg aagaatgtgc caagatggca tcacagactc 4140 atgatcatat ggtccaagca tcaatgatcc gtcatctatc agccgatgat ttacacatgt 4200 tactcgacga tgtcgatttg cagggggaga gtcgtcctat tggtgtacct cagcagcaaa 4260 tcaacactgt cgattaccat ttcgtctcat ctcacttggg accagagacg aagaaagcgt 4320 tccaacaagg ttacgcgtcc gaccctgtat tcaagcaaca gtggtcgaag gggacagaca 4380 ctgagaagtt cgtaaagcat aatgatcttc tgttcttcaa acagaagcaa ggagaatctg 4440 tctacagatt gtgtgtgccc aaatccgaga agcttcgcac ggatgtcatc acagagtttc 4500 acgatggaaa tacatccgcg catccgggaa gcaggcggac gtatctaaaa gcagcacaat 4560 ggtactattg gccaacgatg gatcaagata tcagagagta tgtgcgtact tgtgaaacgt 4620 gcgcacgatg gaagtccagc agtcagagaa agaagggtct gctgatacca attccagcac 4680 cattggaatg ttgggaagtg gtgtccatgg actttattac gggtttacca gcgtcagaag 4740 ggtacgatgc tattttcgtt gctgtagaca agttgtctaa gcgtccgaaa tatgcaccga 4800 cctatacgac tgctgatgcg aaggatacag cggaagtttt ctttaatgct gttgtcaggc 4860 accatggatt accgcaagtg attattagtg atcgagatcc aaaatttatc tcggattttt 4920 ggaagtcact aatgacactg atgggtgtca aactgagtat gactacggct catcgagctc 4980 aagccgatgg ccagacagag cgtcagaacc tagtgctcga agatgcgctg agatgcatgg 5040 tgtcatatca tggagatgat tgggtgaagc atctcggaac gattgagtat gctcattcaa 5100 cattggtaaa cgcgtcgact aaattgactc catttgaagt cgacacaggc cgcaaagttt 5160 ctaacgttgt ggcagaagag atgaaggatt tattgcgtaa agaagacgac gtcacactgg 5220 ccgagtacgc aaagaacttt gctaaggaac gacaggagat cgtagaacgt gcccagaaga 5280 atttgaaaga agcacaagac agacagaagg agtactatga tcgcaaacgc aggcaagtgg 5340 tgttcaaaga aggtgaccta gtgttacttg atacgaagaa tttaccactc aagaccgtca 5400 acaagaacac ggagctaaag aaggcgaagt tagctgcgaa gaaagtcggt ccgttcgaga 5460 ttgaacggat gataaatgac aacgtggcaa agctgaaact gccgttgtca atgaagagac 5520 tcaatccgac gtttaacgtg gaattgttgt ctcattatct gacgaacact actgactttc 5580 ccaatcgccc gattccgaaa gctgtaccat tgatcttgga cgacgacacg ggagaagagc 5640 tctatattat cgagcgtctt atcaagagaa ggaccagacg ccacaagcga gaatggctcg 5700 tgcagtggca cgggttgcca agacatgagg caacctggga gtgcgaagcg gatatcaaac 5760 acgtttcgca ttggcgtcaa ctcctggaag ggtttaaatt ccgccaaggc gagatcagcc 5820 cgggggaga 5829 // ID Gypsy-7_PSo-I repbase; DNA; PLN; 7554 BP. XX AC AAQY01000344; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PSo_; KW Gypsy-7_PSo-LTR; Gypsy-7_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7554 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000344; Positions 2955 10508. XX CC Positions [4422-4919] - Integrase core CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 1458..2750 FT /product="Gypsy-7_PSo-I_2p" FT /translation="MAWLERHEPWIDWRSKTLGATHFSPGGALASHEPTSA FT RKQKRFWREHWTESVNVLDIGVSELVDTECVENERSERGSRTAGGAARIPL FT SGCAPEGDALLYSSEDKVGMKPRSHGRGPAVEGCGAALIPLSGCASEGDAL FT LRAGEGAVDRKSSEDGRCPDQGCGAALIPLSGRASEGDALLRASDGAAGAM FT PMDKGLCPNEDRGVARNPLSGGCGSCSSSLSVGKDTGAPLELNEVVTPDVK FT THAKSRSSSGRTVSMKRRQRRKALAARRKAPAISRVEKGVSSGEAPRESEQ FT LYTLVNGVTGDVDGGINLDDLPSLSAVLELDEMSLAEFGEALKAGDLAEVV FT VIRPEEELNSSSLLDEAVLEDTKKALNARSGSAILKVPSDPLYQAVKEYQD FT VVSKEPPSGSRCSIRNRSRSGNEVLRDEAVALAEGAV" FT CDS 4116..6113 FT /product="Gypsy-7_PSo-I_3p" FT /translation="MELSARLRARLHRYSLDGGLLFYNTGPEDTPRVVIPH FT DEDLKYRILYEAHDTPLAGHLGREKTYSSVSTHYWWPKLYKWTSTYVRTCE FT TCQRVKSSPHAAAPLASLPVPSSCWQSMSMDLVFGLPANAAGNTGVVVFAD FT RLSKMAHVAAVPDTIDGKGTATLFLDRVFRQHGLPEAIVSDRDPRFTGNFW FT SAVFAVLGIKLDMSTADHPQTDGQTERVNRVAEDVLRSICAETPKRWSAML FT PLVYFALNNAVHASTGYTPFYVNSLSHPRVPLTPPRGGLGLGGGGEADLAD FT RLADVSPATVRKQVDAFLSTRLSVLRHVRDAMAESQDKQKEHADVRGTGNA FT ESYEVGDLVLLNAKNLPTHAVSAVFKTKLRPRLIGPFKVVVKKGLAYTLNL FT PKKMRAHPVYYVGLLKPYQDPMKVQMEAPRVTRSQARKPRSSRKQSQASRT FT RPSTWAPQAQAEESAPEVPRAQREPQAQEAQQSEPACGPGGRADPEAQPAD FT AVAPRAPGQAAHRDRDSIAPSPPGPQGGPRPLEEPRSIASARRARRVRWQS FT DPDAHQRHGYDPEGDLPAAAPPRAHFESQRAPQRPPPALLDEHGNLHYHVE FT RLLAKRRCRGQNQYLVKWRGYPHSENSWEFEVPLRQDCPDVVDAFDQLDHQ FT RPEGSRPARRPSRASRQ" FT CDS 2794..4002 FT /product="Gypsy-7_PSo-I_1p" FT /translation="MVRESKSPRSTPTFCVRKPNGKWRIVHAFNKLNAATI FT PAQTPIPRKDVLQNNMTGCTMYSALDLVDGYYQLLMRTSDIPLTAVSTPSS FT MLWEWLVMPQGLSNAPATFNRLVTQLFRPHRAYAQTYFDDSFVHSRAEHGK FT TDMENYMEHLRAVLECMRKNKLYANIDKCIFGAEEIPFLGCFIGKRGLRAD FT PVKVKAIVDWQVPKNQKDLRKWLGLANYLHKYSENYAEMARPLSNLLKKDA FT EWCWDTEHQDAFAAIKDSLLHAPILALPDPARPFSVVCDASDFAIGCALLQ FT VDAEGRERVAAFESRQLKAAEKNYPVHDKELLAMKYALVKFRVHLLGSQPF FT VIYTDHASLRTATQSPHLSQRMARWLSFFAEYNFEVKYKPAGTMSLRTRCR FT AGRIMSWLM" XX SQ Sequence 7554 BP; 1505 A; 2097 C; 2476 G; 1476 T; 0 other; cttggtagca cttgtagtca atccgacacc tgagtctgta tagactgacc ctctgtggag 60 aatggagcac ttcgctcact tgcccccgaa ccagcaggat gcgcttaaaa agcttgtgtc 120 cttgctgggc ccggagggcg tgacgcaact tacgcagcaa ggccccgacg cggtgaacgc 180 gcgtctcgag gcgttttcaa gctacgagaa tgctctgcta gagcacctcc agcagaggat 240 ggcgactgcc gcggcgcccc aagcgccccc ttcgtcgtcc gacgcgggaa caagacccaa 300 gccgctcatg ttgagcgtga agaccttcga aggaaaggag ggtgaaagct tgatgctttg 360 gacccgtgag gttgagatgg ctatgagctc agctctactc cggacggagt cgcagcgcgt 420 ggcactagct atctcgaagc tcggcgggcg agcgagagag tggcactaac gtccgggacg 480 tcggtcgagg tggccttccc gacgtgggac cagctgaaac agcaattgtc ccgagtgttc 540 gctccgccta atgaggcgta tcgcgtgcgc tcacgcttcc tggctactcg gcagagcaag 600 aaggagttga tggactacgt ccaagagctg agaactctca ttgcagggat gtctgctgac 660 ccgttgtcac cgttacggtg ttcatggagg gcctccgcac tggcgttgcc aggactgagg 720 tgttccgaac gcacccgagc tcttttgaag aggctgtgag cgtcgcattg aatgcggaac 780 acaactttaa gtcgtcgcga cttgggggaa tgcgtcttac gctagcgcgt cgaatggtcc 840 ggaacccatg gacctcagct atgctgaaga cgaagaagcc gagcttcgtg ctgctgagca 900 gcgtcgcggt gtccgcagat gcttcatctg tggtgacacc cgtcaccttc gtgctgggtg 960 tccgctgcgt catcagcgcc aggcttcgtc aagccgctct tcgagtttga gccagggctc 1020 tggttcgtct cggggaaacg agaagtccca gtaggccgcc ccgcgcctac tggggaagaa 1080 ctaagttcta ttgagcctcg gtgaggtgga ggtcgacagg acttagcccc gaagagagcc 1140 gtactctcta acacggaacg tgtatgcaag ccgggcttgc tagttgtcca agcttgggtg 1200 aagggcttca caaagccata gacgattttg atcgattcgg gagcgtcggg taactacgcc 1260 cggcattcta cgatggacgg aagtcagctt tatgctgagg cgctggtagc gcgcgggagt 1320 gacatcgtca ctgttcgtct cgcgacgggc actcgtgtca cggtgcctaa ggtccctgtg 1380 gacctgggcg tgaagttttt ggattttgat agcgtggaac gctgtacctc gattcgagat 1440 atgatctcat ccttggtatg gcgtggctgg aacgccacga gccttggatc gattggaggt 1500 cgaagaccct tggtgctacg cacttctctc ctggcggagc attggcgagt catgaaccca 1560 cctctgctag gaagcagaag cgcttttggc gcgagcactg gaccgagtcg gtcaatgtgc 1620 tggacatcgg agtttccgag ttggtggaca ctgagtgtgt cgagaacgag cgttccgagc 1680 gtggctcgcg gacggcaggt ggagcggcac gaattccgct gagcgggtgt gcgcctgagg 1740 gcgacgccct gctgtattcg agtgaagaca aggtcggcat gaagccgagg agccatgggc 1800 gcggcccggc tgttgaagga tgtggagcgg cactaattcc gctgagcggg tgtgcgtctg 1860 agggcgacgc cctgctgcgt gccggtgaag gcgcggtcga caggaagtcg agtgaagatg 1920 ggcgttgccc ggatcaagga tgtggagcgg cactaattcc gctgagcggg cgtgcgtctg 1980 agggcgacgc cctgctgcgt gccagcgacg gcgcggccgg cgcgatgccg atggacaagg 2040 ggctttgccc gaatgaagat cgtggcgtgg cacgtaatcc actgagtgga ggctgcggat 2100 cgtgcagctc ttcgctgagt gtcggtaaag acactggagc tcccctggag ctgaacgagg 2160 tggtgacacc tgacgtcaag acgcatgcga aatcacggag ctcttcaggg cggacggtgt 2220 ccatgaagag gaggcagcgc cgcaaagcgc tggctgcgcg acgcaaggcg cctgcgatct 2280 cacgagtcga gaagggcgtg tcaagcggtg aggctccacg cgagagcgag cagctctata 2340 cactcgtgaa tggagtgacg ggcgacgtcg acggaggtat caacctcgac gacttgccct 2400 cactgtctgc tgtcctggag ctggacgaga tgtccttggc cgagttcggc gaagccttga 2460 aggctggaga cttggctgag gtagtggtca tacgaccaga agaagagttg aactcgtcct 2520 cgcttctgga tgaagctgtc ctggaagaca ccaagaaggc gctgaatgcg cggagcggat 2580 cggcgatcct gaaagtcccg tcggatccct tgtatcaagc ggtaaaggaa taccaggacg 2640 tggtctcgaa ggagccgccc tccggatcga ggtgttcgat acgaaatcga tctcgttccg 2700 ggaacgaagt actgcgtgac gaggcagtgg cccttgccga aggagcagtg tgacgtcatt 2760 gacgcgttct tcagtgcaaa gcacgaggcg ggtatggtgc gtgagagtaa gtctccacgc 2820 tctacgccga cgttctgtgt cagaaagccg aatggcaagt ggcgtatcgt gcatgctttc 2880 aacaagctga atgccgctac cattccggcg cagacgccga ttcctcggaa ggatgttctt 2940 cagaacaaca tgacaggatg tacgatgtac agtgcgctcg acttggtcga tggatattac 3000 caattgctca tgaggacgag cgacattcct ctcactgcgg tgagtactcc gagcagcatg 3060 ctctgggagt ggttggtgat gccccaaggg ctttcgaacg cgccagcgac gtttaatcgt 3120 cttgtgacgc agctcttcag gccccatcgg gcgtacgcgc aaacgtactt cgatgacagc 3180 tttgtccaca gtcgtgcgga gcacggaaag actgatatgg agaactatat ggagcacctg 3240 cgtgctgtgc tcgaatgcat gcgtaaaaac aagttgtacg ccaacattga caaatgcatc 3300 ttcggagcgg aagagatccc cttcttaggg tgcttcatcg ggaagcgtgg cctgagggcc 3360 gacccggtca aggtcaaggc cattgttgac tggcaggttc ccaagaacca gaaggatctt 3420 cgcaagtggc tcggcttggc caattacttg cacaagtaca gcgagaacta cgctgagatg 3480 gctcggccac tctccaatct cctgaagaag gatgcggagt ggtgttggga caccgagcat 3540 caagatgcgt tcgcggccat taaggacagt ctccttcatg cgcctattct ggctttgcca 3600 gaccccgctc gtccgtttag tgtcgtctgt gacgcctcgg actttgccat cggttgtgca 3660 ctgctgcaag tagacgccga ggggcgcgag cgcgtggcgg cgttcgaatc tcgccagctg 3720 aaggctgcgg agaagaacta tcctgtccat gacaaagagc tacttgcgat gaagtatgcg 3780 ctcgtcaagt tcagggtgca cctgttgggc tctcagccgt ttgtgattta cacggatcat 3840 gcgtcgttac gcactgcgac tcagtcgcct cacctctcgc aaaggatggc ccgttggctg 3900 tccttcttcg cggagtacaa cttcgaggtg aagtacaaac cggcaggcac aatgtccttg 3960 cggacgcgct gtcgcgcagg ccggattatg agctggctca tgtaacgacc gtgacttcgt 4020 cattaccgga tttgatccga acggcttatg ccaaggacga cacttgtgtc gcgttgctaa 4080 aggctccggg gagcaaggag tttcaagact cggacatgga attgtcagcg cggctgcgcg 4140 cgcggttaca ccgttattcc ctcgatggag gcctgttgtt ctacaacact ggccccgagg 4200 atacgccccg cgtggtcatc cctcatgatg aggatctaaa gtaccgcatc ctctatgagg 4260 cacatgacac gccgctggcc ggccatcttg gccgtgagaa gacctacagc tcggtgagca 4320 cccactactg gtggccgaag ctgtacaagt ggacgagcac ttatgtgcgc acgtgcgaga 4380 cgtgtcagag agtgaagtcg tcacctcatg ccgcagcgcc gttggcgagt ttgcctgtcc 4440 cttcgagctg ctggcaatcc atgagtatgg accttgtgtt tggcctgccg gcgaacgcgg 4500 cgggcaacac aggagtcgta gtcttcgcgg accgactgag caagatggct cacgttgcgg 4560 ctgtgccgga taccatcgat ggtaaaggta cagcgacgct gttcttggac cgagtgtttc 4620 gacaacacgg actccctgag gcgattgtct cggaccgaga cccccgcttc acgggcaact 4680 tctggagcgc ggtctttgca gtgcttggca tcaagctgga catgtccacg gcggaccatc 4740 cgcagaccga tggtcagaca gagcgcgtga atcgcgtcgc cgaggacgtg ctccgcagca 4800 tttgcgccga aacgccgaag cgctggagcg ccatgctgcc actcgtttat tttgcgttga 4860 acaacgccgt gcacgcctcg acaggctaca cgccgttcta cgtgaacagc ttgtctcatc 4920 cccgcgtccc gctgacgccg ccacgtggtg gcctcgggct tggtggggga ggagaagccg 4980 atttagctga tcggctagcc gatgtcagcc cggctactgt tcgtaaacag gttgacgctt 5040 tcttgtcgac gcgtctgagt gtcttacgac atgtgcgtga cgcaatggct gagagccaag 5100 acaagcaaaa ggagcatgca gatgtcaggg gcacaggcaa tgctgaaagt tatgaggtcg 5160 gggacctggt gttgcttaat gctaagaacc tacctacaca tgcagtgtca gccgtcttca 5220 agacgaagtt acgcccgcga ctcatcggac ctttcaaggt tgtggtcaag aagggccttg 5280 cgtacacgct caatcttccg aagaagatgc gggcgcaccc cgtctactac gtgggcttgc 5340 tcaagccgta ccaggacccg atgaaggtgc agatggaggc accgagggtg acgaggtcac 5400 aggcgcggaa gccgcggtcg tcgaggaagc agtcgcaggc gtcgaggacg cggccatcca 5460 cgtgggcacc gcaggcacag gcggaagaat cggcgccgga ggtgccgcgg gcacagcgag 5520 agccgcaggc gcaggaggcg cagcagtcgg agcctgcatg cgggccagga ggtcgagctg 5580 accctgaagc acagcctgct gacgctgtag ctccccgagc tcccggccaa gctgctcatc 5640 gcgatcgcga tagtatcgca cccagtcctc cagggcccca aggcggtccc agaccgctcg 5700 aggaacctcg atccatcgcg tccgctcggc gagctcgtcg agttcggtgg cagtccgacc 5760 cagacgcgca tcaacgtcat ggatatgatc ccgaaggcga tctgcctgct gccgcacctc 5820 caagagctca ctttgagtcg caaagggccc cacagcggcc tccaccggcc ctgctcgatg 5880 agcatgggaa tctacattac catgtggagc gcctcctggc gaagcggcgg tgccggggcc 5940 aaaaccagta tctggtgaaa tggcgagggt accctcactc cgagaactca tgggagtttg 6000 aggtgcccct ccgccaagac tgcccagacg tcgtggacgc ttttgatcag cttgatcacc 6060 agcgccccga gggctcaagg ccggcacgcc ggccgtcccg cgcttcccgg caataagctg 6120 gggagctgct gggtcagcca cattgctccg aggctgaccc tgagccacag cgctcactcc 6180 ctcgcgggaa ggagcggctg gagtgctcga aggagcgaag cgcgcagcgc taaactgggt 6240 ctgcggctgg gcgagtgccg agaggctgcg attggctcgg accttcgcga aatcgaagcg 6300 gagcttgcgt tcaatgcgaa catccacttc actgaagctg gctcggagag cgtccatgga 6360 gctgagcttt cggctgcgct cggcccaaga ctcgaactga gcttcgtact caattgagtc 6420 ttcccccggg ctaagtacca ccgggtacgt ccgcatggcg ggcacggact tctgctgggc 6480 ttgcagtcgc agcctctcgc aatactccgc gacagtcgta tacggtggag tgaggagccg 6540 ctctcgcaga gacgtacgca gtgcgagctc ctccggagta cgggccgcgg gcccaatggt 6600 gtgcagcgcg agagactgct ggaacgcctg gcgacaagcc tccgcggggt cgcgaggtcc 6660 gaagctgtag tcggcagtgc tggggttcag cagaggccgc agctcggggc gctgggagcg 6720 cgtgggagcc atctgcgccg caacctgctc ggactgagct tcgtccaaag ggttggaaat 6780 gacggggccc aggggcacgc cctcaccacg aggtggcgaa taccgtggct cagggagggc 6840 gcgcagctcg tagaggccgg aagagcgttc agggaacggg tttggagttc gcagcggtgg 6900 ccgcggctcc tccctcgacg gcgcagcgcg ctctgccggt ggacggctcg gtgagcgcac 6960 aggagacgtg tgcgcggggc gctcttgatc gcgacggctc ggagagccaa ctggggccgg 7020 cgagccttct tcacggcgtg tcaacggtgt gggcgaagcg tcgccgcggc tcggggagcg 7080 tcgcgtgagt ggggacgcat ctcctcggtt cggagaaccc tccatggact cgtccacctc 7140 gccctcttca ccagagagtt tcctaggatc catgatctga cgggttggtg ctcgaggaga 7200 gctggggctt gcgcgctgcg agctgcgctt caggcgttgc gccgcgaagt actcggacac 7260 cgagagcctt gaaggcgtcc agggtgtgcg cgcgggcgct ggcgttcgcg gaggtgcgga 7320 ggcacgcagt gcagcagcac gagaggagcg aggctccgcg gcggatctcg cgagaggctg 7380 tctgcggtcg acagaccaaa aggctttatg acttgaagtc atgttagggc gcgttgcgcc 7440 gagaagttct cagagaagtc cacgcgatgt ggattgactc gaggcttgac ggaacaagac 7500 ccggaggttg accgttaagc gtgaacacct gtgtccacgg tttggtgagg aggg 7554 // ID Gypsy-57_PIT-I repbase; DNA; PLN; 4048 BP. XX AC AATU01004497; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-57_PIT_; KW Gypsy-57_PIT-LTR; Gypsy-57_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4048 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004497; Positions 38632 42679. XX CC Positions [3254-3745] - Integrase core CC 'ATAAT' target site duplication CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 53..4048 FT /product="Gypsy-57_PIT-I_1p" FT /translation="MAEDITFAKTKANGTTAKKKVPVFRQGTCKQWLQWIL FT RLQEYSAFMQYSYEQEDQLAFVEDIQLLLFDEDLHFFNDFVREEVQLRPDV FT AVAGLRHLTAKHCPAGTRGMLMDELTQLKKKRGNTVRQYSCEFRMIPFLEH FT GENEAVAEADAVRMYRQGMPIDWQVEVNRISRIWDLASIETQFELIERNEH FT DEAILRSNRPRRSEPKQQRDHQRGNTGRQQRNEPRNPRGNNNRVASGKYCN FT YCKKDNHSDDHCFRNPASPAYRPRPGKHYAGRSNAGGSGGTMAAMQKRQNE FT EFASMRFYDSGNSDMMAAMRTEACMKPTAKTLDPSMEVQILMGKHRVKALL FT NTGCTRSAMDRTTAELLKSDVVLRPDVAKFRNADGSVGTTTHCASATFKLL FT DFSQSRACSHEFRVTEKLLYPIMLGRDFMRQQRMVLDFDRGTVEWDGLEVR FT MLGEPSTSHTTAAVLQADMECRSAIDVTPPEEVPLDKMLEGSTLSADAKAK FT IMMLITKFEALFTSQLGSMKREPYVLPLKPDAKPFARRPFPIPRAYYEATR FT HEIQRLVDIGVLKRDATSPWASPAFVVPKKDGSVRLVCDFRGLNKFLQRNY FT YPTRDPKEMIRSVDRPKYKSAFDVPSSYYTIALARSSQPVTCITTPLGKFV FT FLKLPMGVSTAPDEFQAAMDEILGDLDYVRVYLDDILVTSSTFEEHLQHLA FT VVFGRLRDHGLTLHRTKSKICASVIEYLGYQISDDGISALPNKVTAINAIA FT PPNNRREVRRFVGMVNFYSDMLPRRAQLLAPLTRLTSPAVQFRWSTEEQAT FT FDATKAALSECVLLAFPACGRPFHVFTDASKLQLGAVISQDGKPLAFWSKK FT CNHAQTSYPANRLELLSIVLVLREFRTLLLGQELHLHTDHLNLTYSTFHDV FT HMMRWRLEIEEFGPTFHYVPGSSNVVADALSRLPITDENGTKLEEKPTVTM FT AAVEAAMGGEFAVDMREIATEQKNDKDLGESEEREIAGVLVLVHPKSKKIL FT VPTRLRLRLVQNYHDLLLHPGAATMVNTIGQVFYWRGMEPDVRKLTDNCLA FT CLKAKHPTTRYGKLPPKSVEVWPWFEIAVDSIGPYGRKGFRALTIIDTATR FT LIEILPATDATSMEAAYLMDRYWFARYPRPTRCIHDGGSEFKREFAELLES FT YGVERVVTTTRNPQANSVIERVHRVIGEKMRTKSINTQDEWANFLNDTMFA FT MRASNHSMLKASPAQLAFGRDMLVDIAHETDWQAEHQRKVNQVRAHNAREN FT QGRSVWTYQPGDQVLLRRDAGVQSKMQPLFDGPFEVIAVQEHGTLTLDKGR FT YLEKVNVRRVRPCKAKRGGD" XX SQ Sequence 4048 BP; 1042 A; 1072 C; 1141 G; 793 T; 0 other; gtttgatata tcaaatcgta gcgtgaccta cgacaatact acaactcaaa agatggctga 60 agatattaca tttgcaaaga cgaaggcaaa tggcaccacc gcgaagaaga aagtaccggt 120 gttcagacaa ggaacctgca agcaatggtt gcagtggatc ctgcgtctac aagagtactc 180 agcgttcatg cagtacagct acgagcaaga agaccagcta gcgttcgttg aggacataca 240 actactactc ttcgacgagg acctacattt cttcaacgac tttgttcgcg aagaggtcca 300 gctgcgaccg gacgtcgctg tcgctggcct gcggcacctc actgcaaagc actgccccgc 360 tggcacgcga ggcatgctca tggatgagct tacgcagcta aagaagaagc gtggtaatac 420 tgtcagacag tatagctgcg agttccgaat gataccgttt ctcgagcacg gcgagaatga 480 agccgtcgcc gaagcagatg cggtacggat gtaccggcaa gggatgccga tagattggca 540 ggttgaagtc aatcgcatct cccgcatctg ggacctggcg tcgattgaga ctcagtttga 600 gctcatcgag agaaacgagc acgacgaagc tatcctacga agcaaccgtc ctcggcgtag 660 cgagcccaaa caacaacgcg accaccagcg cggaaacact ggtcgtcaac agcgcaatga 720 gccgcgcaac cctcgtggca ataataacag ggtagcaagc ggcaagtact gtaattactg 780 caaaaaggac aaccacagtg acgaccactg ctttcgaaac cctgcgtcac cggcttaccg 840 accacgccct gggaagcact acgcaggacg gtccaatgct gggggcagtg gcggcacaat 900 ggccgcgatg cagaagcgtc agaacgagga gttcgcatcc atgcgattct atgacagcgg 960 taactctgac atgatggcgg ctatgaggac ggaggcttgt atgaagccga cggcgaagac 1020 gctcgaccca agtatggagg tgcaaatcct catgggtaag caccgagtga aggcgctgct 1080 gaacacaggc tgcactcgct cggcgatgga ccgcacgacg gcggaacttc tgaagtccga 1140 tgtcgttcta cggcccgatg ttgccaaatt taggaacgcc gatggctcag ttggcacgac 1200 cacgcactgt gcgtccgcga cgttcaagct gttggacttc tcgcaaagca gggcgtgctc 1260 gcatgagttt cgcgtgacag agaaactgct ctaccccatt atgctcggaa gagacttcat 1320 gagacagcag cgaatggtgc tagactttga ccggggaact gtagaatggg atggcctcga 1380 agtgaggatg cttggggaac caagcaccag tcacacgacg gcagcagtgc tgcaagctga 1440 catggagtgt agatcagcaa ttgacgtgac gccacccgag gaagtgccac tggataagat 1500 gctcgaaggc agcacactat cggctgatgc aaaggctaaa atcatgatgt tgataacgaa 1560 gtttgaagcc ttgttcacga gccagttagg aagcatgaag agggagccat acgtcttgcc 1620 cctcaaacct gacgcgaagc catttgcaag acggccattt cctatccctc gggcttacta 1680 cgaggccact cgccatgaga tccagagact tgttgacatt ggcgtgctga agcgggatgc 1740 gacgtcgcct tgggcctctc cggccttcgt ggtgcccaag aaggatggaa gcgtgcgatt 1800 ggtgtgtgac ttcagggggc tgaacaagtt cctacagcga aactactacc caacgcggga 1860 tcctaaagag atgattcgct cggttgacag accgaaatac aagtccgctt tcgacgttcc 1920 ttcgagctac tataccattg ctctcgcgcg tagcagccag cccgttacgt gcatcacgac 1980 accgctcgga aagttcgtgt tcctaaaact gcctatgggc gtgtcgaccg ctccggacga 2040 gttccaggct gcgatggatg agatcctcgg ggacctggac tacgtgcgcg tgtacttgga 2100 cgacatcttg gtgacgtcgt ccaccttcga ggagcatctg cagcacttgg ctgtagtgtt 2160 tggtcgactt cgtgatcacg ggctaacact acaccgtacg aagtcaaaga tctgtgcctc 2220 agtgatcgag tacctggggt atcaaatttc ggatgatgga atctcggcat tacctaacaa 2280 ggtcacggcg attaatgcga ttgccccgcc gaacaaccgc cgtgaagttc gtcgattcgt 2340 tggcatggtc aacttttaca gcgacatgct gccacgcaga gcgcaactac tggcaccgct 2400 gactcgactc acgtccccag cagtacaatt ccgctggtcg acagaggaac aggcaacttt 2460 tgacgcaacc aaggcagcac tatcagagtg cgtgctttta gcgttcccgg cttgcgggcg 2520 cccgttccac gtcttcacgg acgcttcgaa gcttcagctt ggcgccgtca tttcgcagga 2580 tggcaaacca ttggctttct ggtcaaagaa gtgtaaccat gcgcagacct catacccagc 2640 taacagactc gagctgttaa gcatcgtgct ggtactgcgc gagttccgga cactgctttt 2700 ggggcaggaa ctgcatctgc acaccgacca cctcaacctg acctactcca cgttccacga 2760 cgtgcacatg atgcggtgga gactggaaat tgaggagttt ggtccgactt ttcattacgt 2820 tcccggcagc agcaacgtcg ttgccgatgc gttgtcaaga ctgcccatca ccgatgaaaa 2880 tggcaccaaa ctggaggaga agccaacagt cacaatggct gccgtagaag cggctatggg 2940 tggagagttc gcggtggaca tgagagaaat tgcaacagag cagaagaacg acaaggacct 3000 aggcgaatcc gaagaacggg agatagctgg agtactggtt ctagtgcacc ccaagtcgaa 3060 gaagatactg gtgccgactc gactacggct ccgacttgta caaaactacc atgacctact 3120 gctgcacccc ggagcggcaa cgatggtgaa caccatcggg caagtgttct actggagagg 3180 aatggagcct gatgtacgaa agcttacgga caactgctta gcgtgcttga aagcaaagca 3240 cccgacgact cggtatggca agttgccgcc gaagtcggtc gaagtatggc cgtggtttga 3300 gattgctgtc gactcgatcg gaccctacgg acggaaaggc ttccgagcac taacgatcat 3360 cgacacagca acgcggctca tcgagatact acccgctacg gacgctacga gcatggaggc 3420 ggcgtacctg atggacaggt actggtttgc acgctacccc cgcccgacac gctgtatcca 3480 cgatggtgga agtgagttta aacgagagtt cgcagaacta ctggagagct acggtgtgga 3540 gcgtgtggtg accacgaccc gtaaccctca agccaactcc gtcatcgagc gcgtgcacag 3600 agtgattgga gagaagatga ggacaaagag catcaataca caagacgagt gggcgaactt 3660 cctgaacgac accatgttcg ccatgagagc gtccaaccac tcaatgttga aggcttcacc 3720 ggctcagttg gcattcggac gtgacatgct ggtggacatt gcccacgaaa cagattggca 3780 agcggagcat caacgcaagg taaaccaagt acgagcgcac aacgctcgtg agaatcaagg 3840 acgatccgtg tggacatatc agccaggaga tcaagtacta ctacgccgtg atgctggcgt 3900 acagagcaag atgcagcctc tcttcgacgg gccctttgaa gtaatcgcag ttcaagaaca 3960 cgggacgctt acccttgaca agggtcgata ccttgagaag gtaaacgtac gtcgtgtgcg 4020 accctgcaag gccaagcgtg gaggagac 4048 // ID PIF_Harbinger-1_PI repbase; DNA; PLN; 2696 BP. XX AC . XX DT 16-MAY-2011 (Rel. 16.05, Created) DT 16-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2696 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2696 BP; 627 A; 664 C; 661 G; 743 T; 1 other; ggggctggtc gcgctggctg gttctggttc tgggtctggt gcttaagtta ggtttaggtg 60 taaagagcgc tgtgattggc tgccgccagc tgagggatag gttaatgtta ctactttggg 120 acaacttgag aacttgcaaa agagttgagt atatccgggc actagttggg cagtggatgg 180 ctgacagcat tttgcatttt gcagacaccg tgcttttgac gatgccaagc cagccccaag 240 ttgttgctct tgctgctcat accgtagctg ctagtgccgc tctcgtgtgt ggcttgatgt 300 tccacaggga tgcccctgtg aacgtattta cgtttcagtg tgctatagct ttcgaaacta 360 tgctagacga acagtgttac aatggttgat tttgccgcca tttgcgctgc tcgcaggcta 420 cttttcgaaa gctgtgcagt atgcttcgag ggcatttcga tcaaaaaccg tacaaaaagt 480 atagctttga acgagtcgtt gcangtactt tatttcattt aggttctagc ggtggtttta 540 gagaaacagc tcaggctttt ggtgaatcaa aggcatggtg tattgtaaat gttaactcaa 600 ccgtacgtgt actaacacag cttcggtcaa cctacataaa gctaccaact acgcctgaag 660 aatgggagat tgaagtttct gctttccacc gagttcaggg ttttccgttg tgttgtggag 720 ctattgacgg gacactgata gcaataaatc ggcctcaaga atttgaaggc tggtacaatc 780 gcaaaggtag tatattgttt tatttgttta ttaaattaat gtccatcgat agatatgcta 840 actcaattgc tgtgtttcta ggcttcccct cgttaaatgt gcaagccgta tgtgatcacc 900 ggaaaaggtt catatcgttc gacgttcgcc ctgggtcatg gagtgacgcg aaaatatttg 960 aattctcggt gtttggcaga aatattgagc gaattctacc aagaggacat catatcctcg 1020 cagatgccgg ctacggtgtt tctcctgcag tgatgacccc atacaacgag aaggatgaag 1080 gaggttccct cacaaatgtg cagacgaagt tcaattacaa gttatcttcg acccgcatgg 1140 tgattgaagg tgcattcggc ctactcaaag aacgcttcag aattttgaaa aagcctcttg 1200 aagaacgcac acctcgagct tcggtgcgcg tcgtcgtcgc ttgtttggtt cttcacaacc 1260 ttctgataga ctttcaagac acaaccaatt tcgagttgag cggtgcttac aactctggtg 1320 atgaggagcg tattcatcaa agtcaaacca acagggaaaa gaaactaaaa agtagattag 1380 gttgtcaaaa acgagatgat attgcagcag actttactgc ttaatcaata cactgttttc 1440 gtgctgcatc gttgacattc cactggcact caacttaatc cctacgctgt aaagccgcta 1500 ttagctggga aagattctga ttttgaagtt gcatttgcac caactgttca tcctgacgct 1560 gcatcatcgt acggaagcgg ctgtcgatca ggtcacctac ggcggtgtcc atgcctttct 1620 ccgcctgttg agttggtgcc atggctgccg ccatggcctg aaagccttcc gcaatcgatt 1680 gcatcccgat ttcaaacgag tcgcctatgg tttttcgctt cttgttcttt tggcctgatg 1740 tctgcttccc caactcctcc tcctcctctt cctcgtcgca tgacaagagt ggacctccgt 1800 cggcttcact atcggctagt gtgtggccat ccatgccagc agagctaaac aaattgtaaa 1860 acaaataagt tttcaactcg taataatatg acgtttacat gcttacctag cccagaactg 1920 ctccatcaga tccagccctg ttggttctgc aacttcttcc tctctgtttc cggtagcgcg 1980 acagtcagcc ttgtactccg cccacttgcg cttcagccat ttcagctgca cagcaagaca 2040 acacgtactt attagttaat attagagcat cattagcttc atagatgctt accttgtttt 2100 tgcattgctc ggtcgagatc ggtgtcttct gccgctcact catgtccgtg gcgagaagaa 2160 gccacgttac cttgagggct gcattgtttt ttgcgctgct aaagcggtcc gcgtaggtgt 2220 caaaacgcag cgtcatcaga tcccgcacca tgctctcggt ccagtcaagt atagccgaag 2280 gcttcttgcc acttgaagct ggcagcttct tggatttatt ccccttccta cgcttgggga 2340 cgggtcctcc gcggtcgacc gcagaaggac tcgaccccgc ggtgccaccc aaagagcccg 2400 agaggttggc atccgcttga gggggtagcg tggcgctggc cgctaatgtg tcactgctac 2460 cgacgagcaa tccgttaatc tgggctgctt ctggcgcggg gtagctgacg atgtcatgga 2520 tccctgcgga cccgctcacc ggacgcgtag ggggcatggt gtacttgagc gcgcgaagtc 2580 taaagtgaac actgccaacg gttctacaag cgacgacaac cactgaaaac cagacagcgt 2640 cttgttctga tacctacccc tagcgagaac cagcaccagc cagcgcgacc agcccc 2696 // ID Copia-2_PIT-I repbase; DNA; PLN; 4467 BP. XX AC AATU01002685; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PIT_; KW Copia-2_PIT-LTR; Copia-2_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4467 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002685; Positions 58838 54372. XX CC 'TGGTT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..4429 FT /product="Copia-2_PIT-I_1p" FT /translation="MGPMVHTVATDEVQGKPEAEPSRERAGSQYGEDDEVK FT KADDETKGTQDKLLDLLKDLAVRMGRLEESQERQEEKERKGRESSVFGSSL FT GLGRAMDRQALDQTPPRRTSPAVSPATYFGMKQREYRDAAANVEMAQAPQP FT ALPQHYVPPQAYRAPPPPSPGPGFAGVPDTRQRKLGIRPLDGKELYHGLGS FT GFLAWGKRFVRQIQFAERASGFQWTEDVKVDILGHHLSGMAERYYNQQVEG FT WWEEQPTPEHAMQRMLHTFATKITPAQSMKMFTAPKSSKRSWTEHYLYLVA FT VSEACGGADNLVLDNIVHYADPNMRVSMLSRLNLARTDYLRQAEELAHFAQ FT STEIELRGKQLERDVVNDVHEDEKDDRECYKCGKFGHLRAACPNKKKRWGE FT GTDADFVLTVEESATETEDWILDSGSSRHLVNDPELLEDAEDYESQCVAAD FT KGALKVTKRGSVMLVTTAMGKMTKVRLLNVQYAENLERNIISYGLLEAKGY FT GLAYRGKHRVVAGINGGPAVFDVEKTNNVLTVRAMESRGTGRKGNVLMSVL FT AEGEADVGRDVQTGPLMHFHRRLGHLNYDTIIKMAKDPASGIALTDEVRAN FT CLACAQGKQTKKKQSRKDTGANSPIDVIGGVICSDLKGPMTPRDRLGNRYM FT VNFVDHRTNYCRVFLAKTKDVAAQKFKHFMAYFERQFNCRIHVLRTDGGGE FT YKTLDLFCKDTGIRRQISEPRNQASNGKAERMHRTVMNMVRSMVFACGLPL FT SFWGDAAEYAAYILNRSPTKANPGSKSPLQMLTKNTPDLSDIVVFGSPCTV FT HVDAKNKSLGERGKAGMIVGKNDEIKGYRVYLPKDKVVVVTQHVSNVETLS FT DVQNEQLKRVHLEDSEESEGTGALETDTSRTKTKEKAKRRGKKSRWTRDRH FT QTRSATRKPAEAVASGGADEDRVEQTADVVNSVREPDPKNYRQAKRSKLWR FT KWLVAIAEELKALEENGVWVVVVPPIGSHVLHTKWVFKTKTDADGAIERFK FT ARLVACGNEQIFGVDFGLTFAAVMELSAVKVILVFARRWGVPARHGDIPNA FT YVKADKEQHLEIYLEIPQGMVIGDEVMRRLGVNVKGKLALRLRKSLYGLRQ FT AGRLWSQLLHAKLEEAGFTRCVTDMCLYYKREDGEMTLVGVYVDDLLVTAS FT KPSLVDDFFCSMSVLSVKDLGEVRKFLGMRVELDSSEGYSLDQQATIEELL FT EQHGLANANSVRVPVGDEHNEAEVDEPQLLTKVGAPGEPTIRRFQSLVGSL FT LWIARCTRPDISFAVHKATRRTHQPTTSDWKLAKRVARYLKGTKSVKLIMQ FT APTRKDDVMALESWSDADFAADKSDRKSVTGGVVTMDGAVVQWICKKQTGV FT SLSTMEAEFTSASQVGRELLGLRELVRELGFRVVEPVPMRMDNQAAIKQLE FT SEESMASAKHVDIRVKFICDFARKGIVKPEYVESRLMMADLLTKALPAPRI FT AELREIFKLK" XX SQ Sequence 4467 BP; 1057 A; 1086 C; 1585 G; 739 T; 0 other; ggttatgggt ccaatggttc atactgttgc cacggacgaa gtccaaggca agccggaagc 60 agagcctagt cgcgaaaggg caggcagcca gtacggcgaa gatgatgaag tcaagaaggc 120 ggacgacgaa acgaaaggga cgcaggacaa gctactagac ctactcaagg acctcgcagt 180 gcgcatggga cgcctggagg agtcgcaaga gcgacaggaa gagaaagagc gcaagggtcg 240 agagagcagc gttttcgggt cgtcgctggg cctgggcaga gccatggaca ggcaggccct 300 ggaccagacg ccaccgcggc gcacgtcgcc tgccgtctcg ccggccacgt acttcgggat 360 gaagcaacgt gagtaccgag atgcagcagc gaacgtcgag atggctcagg cgccacagcc 420 ggcgctgccg cagcactatg tgccgccgca agcgtatcga gcgccaccgc caccgtcgcc 480 aggaccggga ttcgctgggg taccggacac ccggcagagg aagctgggga tccggccgct 540 cgacgggaag gagctgtacc atgggctagg gagcggtttc ctggcgtggg gcaagcgctt 600 tgtgcgccag atacagttcg ccgagcgtgc tagtgggttc cagtggaccg aggacgtcaa 660 ggttgacatc ctcggtcacc atcttagcgg aatggccgag aggtactaca accagcaggt 720 tgaaggctgg tgggaagaac agccgacgcc cgagcatgcg atgcagcgga tgctgcacac 780 cttcgccacg aagatcacac ccgcgcagag catgaagatg ttcacggcac cgaagagctc 840 caagagaagc tggacagagc actacctata cctcgtggca gttagcgagg cgtgcggcgg 900 tgcggacaac ctggtcctag acaacatcgt gcactacgcg gatccgaaca tgcgagtgtc 960 gatgctgtcc aggctgaact tggcacgcac ggactacctg cgccaagcgg aagagctggc 1020 gcacttcgcc cagtcgacgg agatcgagct gcgaggcaag caactggagc gagacgtggt 1080 caacgatgtg cacgaggacg agaaggacga ccgcgagtgc tacaagtgtg gtaaatttgg 1140 ccacttgcgg gcggcctgtc cgaacaagaa gaagaggtgg ggcgaaggca cggacgctga 1200 cttcgtgctc acggtcgagg agtcggccac agagacggag gactggatcc tggacagtgg 1260 atccagccgt catctggtga atgatccgga gctgctggaa gacgcggaag actacgaaag 1320 tcaatgcgtg gcagcggaca aaggagcgct aaaagtaact aagcgcggga gcgtaatgct 1380 cgtaaccacg gcgatgggga agatgaccaa agtgcggctg ctgaacgtgc agtacgcgga 1440 aaacttggaa aggaacatca tatcgtacgg gttgttggag gcgaaggggt acggactcgc 1500 gtaccgaggg aagcaccgcg tggtagccgg catcaacggc gggccggcgg tgtttgacgt 1560 cgagaagaca aacaacgttc tcaccgtgcg tgcaatggag tctagaggca cggggcggaa 1620 gggcaacgtg ttgatgtcgg tgttggcgga aggtgaggcg gatgtcggca gggacgtgca 1680 gaccgggccg ctcatgcatt tccaccgtag gttagggcat ctgaactacg acacgatcat 1740 taagatggcc aaggacccgg catccgggat tgcactcacg gacgaggtga gggcgaactg 1800 cttggcttgt gcccagggca aacagaccaa gaagaagcag tcgcgcaagg acaccggggc 1860 taactcgccc attgacgtga tcggaggagt catctgctcc gacctgaagg ggccgatgac 1920 tccgagagat cgactaggga accgatacat ggtcaacttt gttgatcatc gcaccaacta 1980 ctgcagggtc ttcttggcga agactaagga cgttgcggca cagaagttta agcatttcat 2040 ggcgtacttt gagcggcagt tcaactgccg tatacacgtg ttgaggacgg acggtggtgg 2100 ggaatacaag accctggatc tcttctgcaa ggataccgga atcaggcggc agattagcga 2160 gccgcgaaac caggctagta acggcaaggc ggaacgaatg caccgcaccg ttatgaatat 2220 ggtgcggagc atggtgttcg cctgtggcct tccgcttagt ttctgggggg atgctgcgga 2280 atatgcagcc tatatcctaa acaggagccc gacgaaggct aacccgggat cgaagtcgcc 2340 actgcagatg ctcacgaaga acacaccgga tttgagtgac atcgtggttt tcgggtcgcc 2400 ctgtacggtg cacgtggacg caaagaacaa gtccctgggt gaaaggggca aggcgggcat 2460 gatcgtggga aagaacgacg agattaaagg ctaccgggtg tatctcccga aggataaggt 2520 agtcgtagtg acgcagcatg tgagcaacgt cgagacgttg tcagacgtgc agaacgaaca 2580 attgaagcgc gtgcatctgg aggactccga ggagtcggag ggcacgggcg ctttggagac 2640 agacacttcg aggacaaaga cgaaggaaaa ggcgaagcgt cgcgggaaga aatctcgctg 2700 gacgcgggat aggcatcaga cgcgttcggc tacgcggaag cccgctgagg cggtggcgag 2760 tggaggcgct gatgaggatc gggtggaaca gaccgcggac gtggtgaaca gcgtgcggga 2820 gcccgacccg aagaactacc ggcaggcaaa gaggagcaag ctctggagga aatggctggt 2880 tgccatcgcg gaggagctca aagcgctgga ggagaacggc gtgtgggtcg tggtggtgcc 2940 accgatcggc agccacgtac tgcacactaa gtgggtattc aagaccaaga ctgatgcaga 3000 cggagccata gaaaggttca aggccaggct cgttgcgtgc ggcaacgagc agatctttgg 3060 cgtggacttc gggctcacgt tcgcggcggt catggaactg agcgcggtga aggtcatcct 3120 ggtttttgct cgtcgctggg gcgtgccggc gaggcacggg gacatcccca acgcgtacgt 3180 gaaggccgac aaggagcagc atctcgagat ctacctggag atcccgcagg gaatggtgat 3240 cggagatgag gtgatgcgca ggctcggagt gaacgtcaaa ggtaagctgg cgctgcgctt 3300 gaggaagtcg ttgtacggcc tacgccaagc aggcaggctg tggagtcaac tcctgcacgc 3360 gaagctggag gaggcggggt tcacgcggtg cgtgacggac atgtgcctat actacaagcg 3420 agaggacggc gagatgacgc tcgtgggcgt gtacgtggat gatctcctgg tcaccgcgtc 3480 caagccgagt ctggtggacg atttcttctg ctccatgagc gtgttgtccg tgaaagactt 3540 gggcgaggtg aggaaattct tggggatgcg cgtggagctg gacagcagcg aggggtactc 3600 gctggaccag caggcgacga tcgaggagct gctggagcag catgggctgg caaacgcgaa 3660 cagtgtgcgg gttcctgttg gtgatgagca caacgaggcg gaggtagacg agccgcagtt 3720 gttgaccaag gtgggtgcgc cgggtgagcc aacgatccgc cgtttccagt cgctcgtggg 3780 aagtttgctt tggatagcac ggtgtacgag acccgacatt agtttcgctg tgcataaggc 3840 cacgaggagg acacaccagc cgaccacgag tgactggaag ctggccaaga gggtcgcaag 3900 gtacttgaag gggacgaaga gcgtcaagct gatcatgcag gcgccgacga ggaaggacga 3960 cgtgatggct ttggagagct ggagcgacgc agacttcgcc gccgacaaga gcgacaggaa 4020 gtcggtgact ggaggagtcg tgacgatgga tggggctgtg gtgcagtgga tctgcaagaa 4080 gcagaccggc gtgtcgctct ccacgatgga ggccgagttc acgtcagcgt cgcaggtggg 4140 gcgcgagctg ctgggacttc gggagctggt gcgtgagctg ggtttccggg tagtggagcc 4200 agtgcccatg agaatggaca accaggcggc gattaagcag ctagaatccg aggagagcat 4260 ggcgagtgcg aagcacgtgg acatacgcgt gaagttcatc tgtgattttg ccaggaaagg 4320 gatagtgaag cccgagtacg tggagtcacg cctgatgatg gcggatcttc tcacgaaggc 4380 gttaccggcg ccgaggatcg cggaactgcg ggagatcttc aagctgaagt gacgagttct 4440 gccgagagtg cgacgaccga ggaggag 4467 // ID Gypsy-1-LTR_PI repbase; DNA; PLN; 197 BP. XX AC . XX DT 29-APR-2009 (Rel. 14.04, Created) DT 29-APR-2009 (Rel. 14.04, Last updated, Version 1) XX DE Long terminal repeat of the LTR retrotransposon - a consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1-LTR_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-197 RA Bao W. and Jurka J.; RT "Gypsy LTR retrotransposons from Phytophthora infestans."; RL Repbase Reports 9(4), 730-730 (2009). XX DR [1] (Consensus) XX SQ Sequence 197 BP; 46 A; 39 C; 49 G; 63 T; 0 other; tgtatccgat tgggtgatat tattatctta ttgcaatggg ttgttagtag tactatggaa 60 tgtatagtat tgtaattaat aaacaggcag atgtaggacg gctgtggaag cttctagaag 120 cttccatccg tctgaactgc gggggcggca cttttctttt ggcgcgctct cccccaagct 180 cccctgactt cgataaa 197 // ID Copia-18_PIT-I repbase; DNA; PLN; 6127 BP. XX AC AATU01002883; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-18_PIT_; KW Copia-18_PIT-LTR; Copia-18_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6127 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002883; Positions 132699 126573. XX CC Positions [3100-3501] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 7..3501 FT /product="Copia-18_PIT-I_1p" FT /translation="MSPIRAQSATDVAAGVPDTSSGISTNQDQASTPLAGN FT SSLNNDATLSHSDAERLIRSLAGIPGGRPLFQMLLESMHKLSSTNTEESVP FT VDNPPQSPLNEQNGDRDPDDPWRPLDNMNPTGRYNDGELAEYTKVLINSPP FT IKLPKLHLKGDYKAWKSEVPLHFEPKMLGDITYGPERYDAVEGMRRDKYRV FT WYKSRKNKAFSALALSLSVDLRTTFKIDDIHDNMDAAAMLYDAITQHFEAG FT DGINPDYLLQELVTRRLKPNESVSQYADDIAKKVTLLHQANGEFAEWQHAS FT LLLSNSVEAFKDLAREHGDWLNNHDRKTLTLAKALQRLRAAEHQRDQLRAQ FT TRQPVAHSMQIAHVGTDQGQGQARGRKRNKQQRKRSKGVADKKQRTNCANC FT QGEGHWYAECTALTGQQLKPELARKLQERQLRAPVSLVNSVRRVDAVASEE FT DGQGLFAGLSLCDANAIDLTDGAALSSTATQSPAWSLKSPAESEEGGERRV FT VEGVRASTQRTQSSVAQATQRLQLQVGVPVQHIQVGGQGLQQRQSTSLPTL FT QAPAVAVQTAIQSAIQPEVQPTGQPAVQQGVQATVLQNMQPTVSSTAQTQW FT EGNRSTAGLVPTWESVIYYLGQGLSSNSKGPTLEPWRNQAEPQGGSTVPGD FT SCRGPDVGFNRRQESGMRNDCRPNLESAYERGLWSQDVGHFDPPIQGRGRS FT RSPPRFFNRERTPPRGRGRSPSMRGCEPRGNPGRYRSPPRQQQWRNERPSR FT YEPPPQRDDRLSRYGPSSPQQQWRDNPSRGRGPSPRRDNFQGRNMSPRRFE FT DRRENRPPNSRQVNAVNQNQGMQSAQSEFVEWILDSGSQANVCGDLSLFTT FT IREDQASRLDFANGTTEHTSVCGSVLLRVVNQATGQLEDRLLDDVVYTPNA FT KVNIISLGYLQTKGIFKLTCSEDQQTAWISKPSTSLKFRMRDSIYRLRAER FT VTGVMVMAALKEDMDSKKAMELLHQRFGHMSMETVKVLANKLDVGVKMNAK FT GLTSYECVACAASKEKRMSYKRIPSRKSEPLETLMMDIFSVNEQSVDGATM FT FLFIIDESTRYKWPFLLKKKSEATFHIKVLLNRLRTRFPEKKVRRLHSDQG FT GEFASKELSDYCVDQGIEQQFTNAYSPQENGIVERANGVVLPRIRAMLMAT FT HMPNSL" FT CDS 3915..5969 FT /product="Copia-18_PIT-I_2p" FT /translation="METYLPGWSDGISSAEKPLEAVPLADEPAETELSSSG FT SLSIADAPVSKDSAETAGVAAPAVLQDPAEETEKGLEVRKRKRRRIKKKPV FT MVEKETSGFEIQPPSREPCLKRPRRKQKANVRLSDYVVGLVQAMTTDVQIP FT TTYKQARASKYWQQWRAAMLVELQSLKGHKTWKLVPRKDAKKVKVITCRWV FT FAVKRDERGRIKRFKARLVIHGFKQQLGINYSETYAPVIRFETIRAAIYYA FT VQRGWEVLQFDVKTAFLYGDLDETIFMEQPPGFQVDGPGSICRLLKSLYGL FT KQAPNVWIRTLHTKLVAMGFTRTDSDYGLYALRKDGEVKLLLTVYVDDLLL FT MGSRDLCATIAASLQETFELTTMGTVKYLLGVEILIDRPRRQIVYCQKQYV FT LEVLKRFHMENCNGCATPEATTPSKTDVPASKEYLPYRELVGALQYLVSAS FT RPDIAHATRHLGKYLASYDHMHFAQAKRVLRYLKATCDYGLVMNVKLQTDV FT QVSGYSDADYANDPVDRRSISGYITMLDDNVISYASRKQEINALSTCEAEY FT VAMAEATKDLLWLAGLCKELSWKHPVPQLLGDNQGAIALTAKPGKHSKSKH FT IDNKYHMIRRHVELKQLTTQHIGTDDMVADIMTKALAVVKFTHFRKAMKVL FT PIVSSDDNVSEDMATTTTTATALTTAVDAEAVPERH" XX SQ Sequence 6127 BP; 1664 A; 1465 C; 1671 G; 1327 T; 0 other; ctggttatga gcccaatcag ggcgcagtct gcgactgacg tggctgctgg cgttccagac 60 acaagttctg gaatttcgac caatcaagat caagcttcaa ccccattggc aggaaattca 120 agcttgaaca atgacgcaac actgtcgcac agtgatgcag aacgactaat tcgttcattg 180 gctggaatcc cgggtggccg cccgttattc caaatgttac tcgaaagtat gcataaactt 240 tcgtcgacga acacggaaga atccgtgcca gttgacaatc ctccccagtc gccgctaaac 300 gaacaaaacg gcgaccgaga ccctgacgat ccgtggcgcc ctctagacaa catgaaccct 360 actggccgct acaacgacgg cgagctggct gagtacacca aggtccttat caactcgcct 420 ccgatcaagc tgcccaagct acatctgaaa ggcgactaca aggcctggaa gagcgaggtg 480 ccgttgcact tcgagccgaa gatgctggga gacatcacct atggccctga gcgttacgat 540 gcagtagaag gcatgcgtcg tgacaaatat cgcgtgtggt acaagtcgcg caagaacaag 600 gcattctcag cactcgcgtt gtcgctgtct gttgacctac gtacgacgtt caaaatcgac 660 gacatccacg acaacatgga cgccgccgct atgctctacg atgcgattac gcagcacttt 720 gaggctggag atggtattaa tcctgattac ctactgcaag agctagtgac gcgccggctc 780 aagccaaacg agtcagtatc gcagtatgct gacgacattg caaagaaggt gacacttcta 840 catcaagcta atggtgagtt tgctgagtgg caacatgcaa gcctactact atcgaacagc 900 gtggaagcgt ttaaagatct cgcccgtgaa cacggcgatt ggcttaacaa ccatgatcgt 960 aagacactta cacttgctaa agctttacaa cgactacgcg ctgctgaaca ccagcgtgac 1020 cagctgcgtg cacagaccag acaaccggtc gcgcattcaa tgcaaattgc tcatgtcgga 1080 acggaccaag gacaaggtca agcccgagga cgcaagcgca acaagcaaca gcgcaagcga 1140 tctaagggcg ttgcagataa gaagcagcgc acaaactgcg cgaactgtca aggagaagga 1200 cattggtatg ccgagtgtac ggctctcact ggccagcaac tgaagccaga gctcgcgaga 1260 aagctgcaag agagacaact aagggctccc gtgtcgctgg tgaactctgt acgtcgtgtg 1320 gatgcggtag cgtcggaaga agatggccaa ggactgtttg ctggcctatc actatgcgat 1380 gcgaatgcga ttgaccttac ggatggtgct gccctatcgt ctacggctac gcaatcacct 1440 gcatggtcac taaagtctcc tgcagaaagt gaagaaggag gagagcgtcg tgttgttgaa 1500 ggggtgcggg caagtacgca acgcactcaa tcgtcggttg cgcaagcaac gcagcgactg 1560 cagctgcaag ttggagttcc tgttcaacac atacaagttg gaggacaagg actacaacaa 1620 cgacaatcaa cctcactgcc tacactgcaa gcaccagctg tagctgtgca aactgccata 1680 caatctgcga tacaacctga agtgcaacct actggacaac ctgctgttca acagggtgta 1740 caagctactg tactgcaaaa catgcaacct actgtatcga gtactgcgca gactcagtgg 1800 gagggcaatc ggtctacagc tggattggtg cctacgtggg aatcagtcat ctactacttg 1860 gggcaaggac tgtcgagtaa ctcgaaaggg cctacacttg agccatggcg caatcaagct 1920 gaaccacaag ggggttcgac tgtgccgggg gatagctgtc gaggtcctga tgtcgggttt 1980 aacagacgcc aagaatcagg gatgcgcaat gattgcagac ctaacttgga gagtgcgtac 2040 gagagaggac tctggagtca agatgttgga cactttgacc ctcctattca aggacgagga 2100 cgaagtcgtt caccaccccg attcttcaat cgagaacgaa ctccaccaag aggaagaggc 2160 cgttctccgt caatgcgagg gtgtgaacca agaggaaatc cagggcgtta tcgatctcca 2220 ccgcgtcagc agcagtggcg taacgagaga ccgagtcgct atgagccgcc acctcaacgt 2280 gatgatcgac tgagtcgcta tggaccgtcg tctccgcagc agcagtggcg tgacaatcct 2340 tcgagaggac gaggaccttc acctcgacgt gacaatttcc aagggcggaa catgtctccg 2400 cgtcgatttg aagaccgtcg tgagaacaga ccacccaact ctcgtcaagt caacgctgtg 2460 aaccagaacc aaggtatgca atcagctcag tctgagtttg tggagtggat acttgattca 2520 ggatcccagg caaatgtctg tggtgacctg tcattgttta ctaccataag ggaagaccaa 2580 gctagtcgac ttgactttgc gaatggcaca actgaacaca cttctgtttg tgggtctgtg 2640 ctattgcgtg ttgttaacca ggcaactggc cagctcgagg accgtctcct ggacgacgtg 2700 gtgtacacac cgaacgcgaa ggtgaacatc attagtttgg gctacctaca aacgaagggc 2760 attttcaagt tgacatgctc agaggaccaa cagactgctt ggatctccaa gccaagcaca 2820 tcactcaagt tcaggatgcg tgacagtatc taccgactac gtgcagaaag agtgactgga 2880 gtaatggtga tggcggctct aaaagaggac atggacagca agaaagccat ggagctgctt 2940 caccaacgat ttggtcatat gagcatggag acggtgaaag tgttggcaaa caaactcgat 3000 gttggagtta agatgaatgc aaaaggtctg acttcctacg agtgcgttgc ttgtgctgcc 3060 agtaaggaaa aacgaatgtc ttataaacgg attccatcgc ggaagtccga acctctggag 3120 actctcatga tggacatttt ctctgtgaac gaacagtctg tggatggagc tacaatgttt 3180 ctctttatca tagatgagtc tacaaggtac aagtggccgt tcctactcaa gaagaagagt 3240 gaagcaacgt ttcacatcaa ggtcctactg aacaggctgc gaactcgttt tcctgagaag 3300 aaggtgcgac gactacactc tgaccaagga ggtgaatttg caagcaagga gctaagtgac 3360 tactgcgtcg accaagggat tgagcagcag tttacgaacg cctattctcc tcaagagaac 3420 ggcattgtgg agcgtgctaa tggcgtggtt ctaccaagaa tcagagcgat gctgatggct 3480 acacacatgc ccaactcctt gtgaggagaa gccttcctgc atgtggtgac gacgttgaac 3540 tggttgccca ccaagccttt aggattggtg tccccgcacc agaaactgta cgaatcggag 3600 cccatgctgg atgatttgcg tacttggggc tgtctggcac acgtgcgtat tccctctgag 3660 tcaagacaag cgaaagaaaa gctggaagca agggcaagac tgtgtttatt actgggttat 3720 agcgaagcga ccctaggcta caagttcatt gacctggtga cagctcaagt ggtgacagct 3780 cgtagtggga atgtgaagtt ccatgaggag ttcacaaccg atggcatcta catgaagcat 3840 ctattagaga acgcattctt tgatggtgat catactctac tcagactgta cctgtggcgc 3900 gcatcaagac caacatggag acgtaccttc caggttggag tgacggcatc tctagtgcgg 3960 agaagccact tgaggcggta ccacttgctg acgaacctgc agaaactgag ttaagttcaa 4020 gtgggagttt gtcaatcgct gacgcacctg tgagcaagga cagtgcggag actgctggtg 4080 ttgcagcacc agccgtgttg caggatcctg ctgaagaaac cgagaagggt ttggaagtga 4140 ggaagcgcaa gagacgcaga ataaagaaga aacctgtaat ggtggagaag gagacaagtg 4200 gcttcgagat tcaacctcca tcaagagaac cctgcctaaa gcgaccaaga aggaagcaga 4260 aggcaaacgt tcgactgtcg gattacgtgg taggcctagt gcaggctatg actacggatg 4320 tgcagattcc gacgacgtac aaacaagcac gtgcaagcaa gtactggcag cagtggagag 4380 ctgcaatgtt ggtggaactt caatcgttga agggtcacaa gacctggaaa cttgtacccc 4440 gcaaagatgc caagaaagtg aaggtgataa cgtgtaggtg ggtctttgct gtgaagcgag 4500 atgagcgtgg acgaatcaaa cgtttcaagg cgcgactagt gatccatgga ttcaaacaac 4560 aacttgggat taactactct gagacctatg cacctgtgat ccggttcgaa accatacgtg 4620 cggctatcta ctacgctgta caaagaggtt gggaggtgtt gcaatttgac gtgaagacgg 4680 cttttctgta tggagacttg gacgagacta tcttcatgga gcagcctcct ggcttccagg 4740 tggatggacc tgggtccatt tgcagattgt tgaagagcct gtacggactg aagcaagcac 4800 cgaacgtttg gattcgcacg cttcatacga agcttgttgc gatggggttt actaggacgg 4860 actctgacta cggcctatat gcattgagga aggatggtga agtcaagttg ctattgactg 4920 tatacgtgga tgatctactg ctgatgggtt cacgtgacct gtgtgccaca atcgctgcct 4980 cactgcaaga gacattcgag ctcacgacga tgggcacagt caaatatctc ttaggcgtcg 5040 agatcctgat tgaccggccg cgccggcaaa tagtgtactg ccagaagcag tacgtactgg 5100 aggtgttgaa gcgttttcat atggagaact gtaatggctg cgctacacca gaagctacga 5160 cgccctcgaa gacagacgtg cctgcttcga aggagtatct tccctacaga gaactggtgg 5220 gtgctctcca gtacctcgtt agtgcatcga gacctgacat agctcatgct acccgacacc 5280 tgggcaagta tcttgcgagc tatgatcata tgcatttcgc acaagccaag agggtactgc 5340 gttacctgaa ggctacatgt gactacggac tagtgatgaa tgtgaagcta cagactgatg 5400 tgcaagttag tggctactct gatgctgatt atgcgaacga ccctgtggat cgacggagta 5460 tcagtggcta catcactatg ctggacgaca acgtcatctc ctacgcatct cgcaagcaag 5520 agatcaacgc gcttagtacc tgtgaagctg agtacgtagc aatggcagag gcgaccaagg 5580 acttgttgtg gcttgctggc ctatgcaaag agttgagctg gaagcatcca gtacctcaac 5640 tactgggaga caatcaagga gccattgccc taactgcgaa acctggcaaa cattcgaaat 5700 cgaaacatat cgataacaag taccacatga tcagacgcca tgtggagttg aagcaactta 5760 caacccaaca catcggaact gatgatatgg tggccgatat aatgacaaag gcacttgcag 5820 tggtgaagtt cacacacttt cgcaaggcta tgaaagtctt acctattgtg tcgagcgatg 5880 acaacgtatc cgaggacatg gctacaacta cgactactgc tactgcgttg actactgctg 5940 ttgatgcgga ggctgtacct gagcgacatt gatgaagacg agggcgatcg agtgggagta 6000 ctgttactga gtggactgct attgcctttg agctgcgact acgctactac taggactatg 6060 gcggcaacta ggatgcgcgt gtgtgatcgc gtcgacttcc aagtgcgtcg ccgagatcaa 6120 gtgggag 6127 // ID Gypsy-9_PR-LTR repbase; DNA; PLN; 893 BP. XX AC AAQX01001145; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PR_; KW Gypsy-9_PR-I; Gypsy-9_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-893 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001145; Positions 110791 111683. XX SQ Sequence 893 BP; 193 A; 209 C; 256 G; 235 T; 0 other; tgtggcgttg ggttttggtg ccgaactgtc acggtttggc tgacgttgca cctttcagtg 60 aacggcgaca gagcgtcttg attggcgggt ctcatttccc gcgctatagt gacctaggaa 120 caatagtgac cgaggtctcg gctgggtcta ataaaacccc gaccgaggtt aaaagcctcg 180 tttgtaccca tttcgtgtcg taccctcggc tgtgtagagc cggctatacg atttcccaca 240 gagatctgtt tacacttgat atttgtatag agatatagga ctagccaaat gatgacctac 300 agaggctccc agagctgtag gataagagaa ataaatcagc agtcttcccc acaagccacc 360 aagggtcaag tccgtcttcg gtaagtctag ctagcttgtc ttagggtctg gatacgctcg 420 gctgcgtggg atgcctgtca gcgagcttga ggtacattga accgagagtt tgttgctggt 480 cagtccaaga gataggagtg gccgagagtt aggggcgaca aggagtgtcg gtccctatat 540 attggtggaa cccgagtgtt ctcaagtgta tttcactacc cgccgaggct accctcggca 600 aacccgtatt aggcgtgact gccggtaccc ttacttctga gggactgcgg gggttcgcgc 660 gaaagcgcaa tattgcattc tagtcctcgc tcgtgggtag tagtgcaggt tttaaggttg 720 accgaactca accttggtat acagaggcgc ttacaaccaa cccggtgtaa gggatcgttc 780 ctggtcttca ggtgttgatc caacgttcgc tgacctttcg cgagggaagc gtgtgttgtt 840 ggtgggactc ataccgttcg gtagtgagat tttctgcgtg ttcctacacg aca 893 // ID Copia-3_PIT-LTR repbase; DNA; PLN; 239 BP. XX AC AATU01002883; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PIT_; KW Copia-3_PIT-I; Copia-3_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-239 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002883; Positions 84715 84953. XX SQ Sequence 239 BP; 45 A; 59 C; 59 G; 76 T; 0 other; tggagattgg cgtgtcgagc tccgcctgat cacacagttc tgaggaactt gcttctactg 60 ttacggtata gtatacgtgg gacgatcgta tttttacgcg acagttagtg tatactgcgt 120 gtataagaga gagggggttg tcacctcgag gtttcctcct ctaatcccat tccttctctg 180 tgggcaacaa gctcaagtgt tcctgcgttt ccttctcttg tctcgcgctc agctctaca 239 // ID TKL1_LTR repbase; DNA; PLN; 393 BP. XX AC AJ439548; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Kluyveromyces lactis retrotransposon TKL1_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TKL1_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Kluyveromyces lactis OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kluyveromyces. XX RN [1] RP 1-393 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439548; Positions 1 393. XX SQ Sequence 393 BP; 131 A; 82 C; 67 G; 113 T; 0 other; tgttgttcct ggcgttgtag gagtacttct aaggcgccag ttattgaacc aatgctaaat 60 aagatgctga agctgagacg aactaggatc aaggctgcag cgtttggtga ttggaagccc 120 aatctgaaaa gtatataagt agatggtttc ttcatccaat ttcccatctg gatttgacga 180 catattaatt actgttctac attaacttat atgtcagatg taagaaacca aggagaacac 240 cgtaagtaac ttacttaact agtcgatcac caatttaatt atccatttat ctcattaaca 300 actacaagtc aaaatggcat ccaattacgt taatactact aaccctctag gccaagcccc 360 tactaccaaa catgatgaat atccagtcaa aca 393 // ID Copia-37_PIT-I repbase; DNA; PLN; 4860 BP. XX AC AATU01001186; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-37_PIT_; KW Copia-37_PIT-LTR; Copia-37_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4860 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001186; Positions 8848 13707. XX CC Positions [2038-2478] - Integrase core CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS 41..2056 FT /product="Copia-37_PIT-I_2p" FT /translation="MSWTLPLMSDLLSTPSPTASRRMMAVSAPAVSVAAGL FT VGPLAGGAGGIPVLQSPQPQSVSALSSPTSTLILTGTPVVNAPARSHANEE FT QQRRIPLPPTNLALDVNKNPPKMAGSFNLYRAQVMAYLHRFNAWGLIDGSV FT QRPIVNGELQQRYDMLDFFVKDTLLRGAKVEDAKRMCDLPTGKEMSEDLEA FT HHTKREFSNYVWVLKQFFHAAYTREQTMDSWLQEIHDTRRVLANLGRVIDD FT DLTVDVILMGVVQTNRDVVRQFSRIMAPGSRPTLQQVLNTLKSETEMDEIV FT RDEEEGNSKIMHVAKKQKTGDKSSKHISWIKPKGAQSRGAKSSEGGSKANQ FT KSGPGKRKKGKCFYCDREGHHKFECRKLKFDLKHGNVDAEKAKCGNNSGDS FT SSVYGGNKGGPPQPLPLGMIGRVENTCAVSSTGSTLLSTFDTSNSLEWILD FT TAAITHTCADRSLMTQFPHYVETNTPHEPWTGEVTTEHLVSQLPVSFLSTQ FT DRRGETGEALDCVLTGVRNVVGCHVNLLSVNALEEQGWQCESQYPQDGPPR FT RLLWKGPTAIVLGKSRGYYRTRGLCNSPQVVASFVAGGESIFRWHLRFGHV FT NFATLQQLHRDQMVTGMTMSPSERTRDAMDCLSCTLAKSRRMSYKNVSPCR FT SIRCCEKLMTDVCHYGEVRLLET" XX SQ Sequence 4860 BP; 1338 A; 1041 C; 1232 G; 1249 T; 0 other; aaattagagt aaacttccag aacttacgtg aacgctgacg atgtcgtgga cgctgccttt 60 gatgtcagac ttacttagta ctccgtctcc gaccgcgtcg cgacggatga tggctgtatc 120 agcgcctgca gtgtcagtag cggctggact ggtaggtccg ttggctggtg gtgctggcgg 180 gattcctgtc cttcagtctc cacagccgca gtctgtttct gcgttgagct caccaacttc 240 aacactcatt ttgactggaa ctccggtggt gaacgctcca gcgaggtcgc acgctaatga 300 agaacaacaa cgaaggatac cattgccacc gactaaccta gcgttggatg tgaacaaaaa 360 cccaccaaaa atggcaggaa gctttaacct ctatcgcgct caagttatgg cctatttaca 420 tcgatttaat gcttggggtc tgatcgatgg atccgtacag cgtccgattg taaatgggga 480 acttcaacag cgctacgata tgttggactt ctttgtgaaa gatacgttgc ttcgaggtgc 540 taaagttgaa gacgctaagc gtatgtgtga tcttccaact ggcaaggaaa tgtcggaaga 600 tctggaagca caccatacta agcgtgagtt ttctaattac gtgtgggtat tgaagcaatt 660 cttccacgca gcttacactc gtgagcagac gatggattct tggcttcagg aaattcacga 720 tacacgtcgt gtgttggcta atctgggtcg agttatcgat gatgatctca ctgtggacgt 780 gattctcatg ggagtagtgc agacaaacag agatgtcgtg cgtcagtttt ctcgcatcat 840 ggctcccggg tcccgaccca ctctgcagca agtcttgaac acactgaagt ccgagaccga 900 gatggatgag atcgtccgcg atgaggaaga gggaaactcg aagatcatgc acgtggctaa 960 gaagcagaaa actggtgaca aatctagtaa acatattagc tggattaaac ccaaaggagc 1020 acaatctcgt ggagctaaat ccagtgaagg aggaagcaaa gccaatcaaa agtctggtcc 1080 tggtaaacga aagaagggca agtgcttcta ttgtgataga gaaggccatc acaaatttga 1140 gtgtcgtaag ctcaaatttg atctgaagca cggcaacgta gatgctgaaa aagcaaagtg 1200 tggcaacaat tctggggata gctctagcgt atatggggga aacaaaggtg gacctcctca 1260 gccgttacca ttgggaatga tcggtcgtgt tgaaaatact tgtgctgtgt caagtactgg 1320 gtctacatta ttgtcgacgt ttgatacctc taattcattg gagtggatat tagacacagc 1380 agctattacg catacctgcg ctgaccggtc acttatgaca cagtttccgc actacgtgga 1440 gacgaacacg ccacatgaac cgtggacagg agaagtaaca acggaacatt tggtgtctca 1500 attgcctgta tctttcctat ccacacaaga tagacgtggc gaaactggag aagcgcttga 1560 ttgcgttctt actggagttc gtaatgttgt tggatgtcac gttaatctgc taagtgttaa 1620 tgcacttgaa gagcaaggct ggcaatgtga gtcacagtat cctcaggacg gacctccaag 1680 acggctatta tggaaggggc cgacagcaat agtgcttggc aagagtcgag gttactatcg 1740 cactcgtggt ttgtgtaatt cacctcaagt agttgcatca tttgtggctg gaggtgaatc 1800 gatatttcgg tggcatcttc gctttggtca tgtgaatttt gcaacattgc agcagctcca 1860 tcgtgatcag atggttacag gcatgacgat gtctcctagt gagcgcacta gagatgcgat 1920 ggattgccta agctgtacat tagcaaaatc gcgaagaatg tcatacaaga atgtgtctcc 1980 atgtcgatca ataaggtgtt gtgaaaaact gatgaccgat gtctgtcact atggtgaggt 2040 tcggttgctg gaaacgtgat gtttcagctc gtggagaatg aatactcacg atacctatgg 2100 ggcttcttac tccgtcaaaa gtctcaatgt acagacaact tgaagacgtt gatcttacag 2160 ctgaagcaat gtgagcgacc tgtcagattc ctggggtctg atcaaggaac tgagtttgta 2220 aatcaaaagc tacaacaagt cctccgagac aatggagttc gtccgctgta tacaaatacg 2280 tatacacccg aagaaaacag tctcgtcgaa aagatgaatg gtgtagtact gcgatctgtt 2340 cgcgctctcc tcgtaaccag tggacttcca acaaaactat ggggagaggc attcaagtat 2400 gtggtagcga tacgcaactt ctcaccatcc aaagccatta aagacagtac accttacgag 2460 ttatttgaag gtcgtatacc tgatgtatct ggtctacgtg tgtggggctg tgctgcaacg 2520 tacttcgtcc ctaagcaaag acggaaaggt aaacaagata cgacagcgaa agatgcattg 2580 tttctaggat atcctaaatc cacgactgga tatcgtgtcc tcgatcttgt taccggacac 2640 attgtggagt ctcgtgacgt aaagtttcgc gaacagtgaa cagtggcggc tgactatgtg 2700 gatcagttgc ctgacaagtt ctgcgcgaag aagcctggtg tggtgctacc tgtttcaatc 2760 ccgtatgtaa gacttcctct tcatgactac tcgagctcct gtagcagcga tgaaactgca 2820 ctggcattgc atagctccga tgaagtcggt cctatggatg ctaaggttgg aggcgatgta 2880 gtgcaagaga cgaaagttag aagagcgggg gagcttgagt ttgataatat caactcaggt 2940 ccaacaaaac acagacgaac aggggagctg gcccagactt atgatactcc aaattgtgac 3000 tccacttcta taattcgtgt cgatggacat gagaatgata cgagatgtac aaaacacggt 3060 gaaaagaagc gacaaccggg tttggttgaa gttaagcgac gtcggaaaac acacaccaaa 3120 gacccaattg ttacgcttcg cagatcaaca cctacacgtc gtccaaacgt aaggctacat 3180 ggcttttcgc ttgccaatta cttcatctca actacggaca agctgcccaa gtcagttcgt 3240 gcagcgcttg caggttatga tcgtgataag tggtggcaag ctttgcaaac ggaattctct 3300 gacatacaag cgaatcatac gtggatttta gtgagccgtc cgtcggacac taagatcatg 3360 accagtcgct gggtgtttgt cattaaaagg aatcaaaacg gagaaattgt acgctacaaa 3420 gctcgactta ttctccgggg tttcgagcaa gcgtttggtt cagactattg ggaagtatac 3480 tctccagttg tgagcatgga ggcaattcgt gttgtcattg tgctcgcatt ctactatgac 3540 ctggaacctc gccaaattga cttcactacg gcatttctaa acggtgagat ggatgtcgac 3600 gtgtatatgg agcaaccaga gttgttcgac gatggcactg gacgtgtgtg cttgttgaag 3660 aagagcttat atggcttaaa gcaagctcct ccgatctgga acgcaacttt gagagatatc 3720 tagtgaagct tggtttcaaa tccagcataa ttgcagatgg cgtttacgtc aagtgggtcg 3780 acgactctcc tatcttcctt acagtctacg ttgatgatgt cgttattgcg gctaaaaatg 3840 agggtattac gtggctaatt tcacagttga agagtgaatt taagctaaag gacttagggg 3900 agatcaacct cttgctggcc atgaatgtaa aagtggagcc gacacgagtc acgttgtcac 3960 aagaatcgta cattcaacac attgtggaaa aatatggcga tcacagtgct cgtgtgcaat 4020 ggacccaaaa gtaaaaccta tgagacccag caaaccctac ggacctgacg taaacagaag 4080 tgatctacca tttcgtcaaa ttgttggttc cctacagtat ttggtgcgtt gtacgcgacc 4140 cgatatcgcg aacgcggttc gtgtcttgag caagtttctt gactgttata cagaggaaca 4200 ttttggactg gctcaacgcg ctcttacgta tttgaagggg actagttcct atggattggt 4260 gctaccaaac gtttctgcaa agggcaatct ttctatcgtt ggatatgctg atgctgacct 4320 cggcaatgat atggacactc gtcgatctgt tactggccaa gttgtaacac ttggtggatg 4380 tgttgtagca taccaaagta agctacagcc cagtgcagtt aaagatacat gcagtgctga 4440 gctcacaaca gccagttgct gtgcagatcg aattcgatgg ctacaaaact tgttagccga 4500 actacaagtt cctgtcgagc ttccagctct tctctggacg gacaatgctg cagctgttca 4560 ggtcatgaca cattccagcg gacatcacaa gatcaagtgt ctagatctgg tgatatacaa 4620 ggttattgac tatgtcgatg ctggttacat tgtggtaaaa cacatgccgt ctaaggtcat 4680 gcctgctgat gccttaacca agccattggg taagggcaag tttcgccaac atcgaaagta 4740 gcttggtgtc gaatgcctgt gtactcaagt tgatggaaat acagatgaag aaccagaaca 4800 acaatccgac ccagatgacg cgcaaacaag ctaaggaaga cttccagttt caggggagta 4860 // ID TY1A repbase; DNA; PLN; 163 BP. XX AC M24989; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE S.cerevisiae Ty1 transposable element B10 DNA, segment 3. XX KW Copia; LTR Retrotransposon; Transposable Element; TY1A; KW Ty1 transposon; mobile element. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-163 RA Eibel H., Gafner J., Stotz A. and Philippsen P.; RT "Characterization of the yeast mobile element Ty1."; RL Cold Spring Harb. Symp. Quant. Biol 45, 609-617 (1981). XX DR GenBank; M24989; Positions 1 163. XX SQ Sequence 163 BP; 46 A; 26 C; 26 G; 65 T; 0 other; cgtcgcggag atttttttgc tactgttgcg gttacatata acttactttt tgcatatatc 60 gtaagttatc agacaccatc tggctcactg aaagtttatt tctatgtgct ttctgaaacg 120 tatgtatata tgagattcaa atacaatatt taaatatttt cga 163 // ID Ambal-2_FCy repbase; DNA; PLN; 10593 BP. XX AC . XX DT 26-JAN-2010 (Rel. 15.01, Created) DT 26-JAN-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ambal-2_FCy is a family of Ambal non-LTR retrotransposon - DE consensus. XX KW Ambal; Non-LTR Retrotransposon; Transposable Element; KW Ambal-2_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-10593 RA Kapitonov V.V. and Jurka J.; RT "Ambal, a novel clade of non-LTR retrotransposons from diatoms."; RL Repbase Reports 10(1), 105-105 (2010). XX DR [1] (Consensus) XX CC Ambal is a novel clade of gigantic non-LTR retrotransposons CC identified in the Fragilariopsis cylindrus and Thalassiosira CC pseudonana diatom genomes. Typical Ambal is about 10-13 kb long CC and codes for two ORFs. While classification and function of the CC ORF1 protein are not clear, the ORF2 protein contains three CC conserved domains: apurinic endonuclease, reverse transcriptase CC and riboniuclease H domains. Usually, 5' termini of Ambals are CC composed of family-specific microsatellites. Ambals are flanked CC by target site dupliations (from 7 to 20-bp). The ~100-bp CC long 5' terminal portion is conserved in diverse families of CC Ambals (e.g. Ambal-1_FCy and Ambal-2_FCy, Ambal-2_FCy and CC Ambal-3_FCy). Most likely it contains the pol II internal CC promoter necessary for retrotransposition of Ambals. The diatome CC genomes contain also families of short non-autonomous Ambals that CC share with autonomous Ambals both the 5' and 3' terminal portions CC (analogously to Ingi non-LTR retrotransposons), e.g. CC Ambal-3N1_FCy and Ambal-1N1_TP. CC The Ambal-2_FCy consensus sequence was derived from 15 copies CC >90% identical to each other. Ambal-2_FCy is characterized by CC 7-15-bp TSDs. Given that most of these copies contain ORFs CC non-interrupted by stop codons, they represent very young and CC potentially active subfamilies of Ambal-2_FC. CC The consensus sequence was derived from sequence data produced by CC the US Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 126..3155 FT /product="Ambal-2_FCy_1p" FT /note="unknown." FT /translation="MITKPLLIRQGWSHTNGEDMYDNVSIGSTKEVQSGGK FT LDQKSMKLKENSENGIIGISDNGKIPDTDEQGWTKINASGGRKPKTTTMER FT PIIDSIITTIDIETKKVKNGTMEVKIESPVRSNRCNIPDTTVRYDDDKSAD FT TTKQLMNQVPTTEEEEEEDEEEDEDEDEEEEEEEEEEVKKIETPTRTTRSM FT ITDGIEFELNSRNHSEQRLTPPRIEEKKQEEDKEDKEEEERYKKEKHNNKK FT NKNITNTPTSEEKELGKERIVTMANEQAGDNENRRLATDRTTDQMQEDNGD FT DTGNNNGNEGNNGNNASGISGNSGNNGTNDDNNNNNSNNNNNRKRGGRAKV FT SIVEPTDMATYTFTIAWRPENKAGKDGKIIIKNVMREMQHREPTIIFHPTN FT SATSPVPRDIRNINNDFPKTPATFDDFFDQNRNRDNTNQQTFMKVSMPHNE FT KELQNKIHNYLYHNQLYMNSPFINDNTLEHVGFVEKGHSRLVFRPAMEKKI FT QNGIKDIMNGDQLTPQQIAQIKNLSSDVRVECHRGTVRGGAYTNQSVCEGI FT VLKTTKSQAKLVMELLAMLPDNLLGEHYRICPKSVNQHLGFELYGQIVADT FT ANFQHKLQPITILNCHPSVFDDMYGNVKVVNSTQVKVKQFILGNCGAISIE FT ETNETATKGKYIVIVPANKVDSARKAIGKMFQEFQESSDRPAALECIKAYE FT NYPLVNDTVTISGHAENLAQKIRERYKNKPKTPIRTMQSSQYSYHGSVSME FT EQNALQAAAAAVPRSIIKKGRHNINLALPLQQWPSPPAVHQAATTTTNQAE FT IGTVMSNLSPDDSAKTMMTNVSKMVESLGTVVTTMAKETANTNETMKQMMI FT QQATTMNNLMMIMTRNEDRRQGTPISISEIQPVIDLQQGSTPASTLTNSQY FT SLSQEQSPSSNKRPKHGLDDDETTALSTVENGDGTTEDMIEEQMEATTNEQ FT SNDVTMGDNDEQTTVETTNTANVPGDFSQFNNNNNNNKQATTNTSAKTDMN FT PPNE" FT CDS 3486..10490 FT /product="Ambal-2_FCy_2p" FT /note="Contains the APE, RT and RNase H domains." FT /translation="MPGLQDRDREDSDSEDDEDFHRNSERKSQIRTKVSRK FT ERSSEGINTKSVRNSEELRTKLSRKERNSELRTKLSRIEKSSTINDEVATT FT VSMETTTTRAIGDSSDYGTEINSEEDLFFEPSDDEGEEEDSVQNNNNYNNE FT NEASTTTTTTTTTTTTTTPTSTTPKTMKITQENLPFGHICDDVAIGNDTPY FT VRVYCQNVCGIYDRDGIGLDSAFNEMKQAGADIFTFNETHGDESNAMARRA FT TKMSKQRMWRDNNEDCKILHSSSTAPVLSFTKPGGNMVGITGSLVGRIRET FT ITDPYGRWCGYTLIGKDNKEIMVLTAYNVSQHKNAKVGDDTLYNQQTALYK FT LKDIRDPDPKKLFIEDLTALVKKARMEDKDIILTGDFNELVGDDPNGMVKV FT ISAGGLTDAHSHQHGIVDITTYTRGVKRLDYVFVTPRLVDHILRSGYEPFH FT ARIASDHRGYFVDFALAGFLDRQLPSIFSASSRAIRGTHPKNITKYVEHLH FT KVFKMRDIYRRVKLQKNWYEKKKLEALDREITAVMLEAEEQCRIHHREPWS FT EEVNEVMTTANILRIHLSSLKNNIDCSNQIQQKQLLLKNQIQLPEDIAEAS FT KALSIAQKKRRKLIRDNRTKTTNIGEEQEAAYVAMNPEMDAKRAAQIFQRA FT RDTKQMMSELPSKMNCPGGLSAVLVPLPKEGIELEYLAITDGPTIERVILE FT KNIRHFRQAEFTPLASPEVIRKIGFGADTETAEHLLDGTGDPTDITDDEWS FT RFLLTSMKRNSEELKIEITAEKMMEKYRRWKERTSTSPSGRHLGHFHALFR FT PLKAKNKKDREQLDDIRQDIIDLHATMLQTAYDNEHVYKRWEYILTCMLAK FT ESGIPRIHRLRVIHLYECDLNLLFSLFFRELDQHCEDNFLLNKGVYGCRPN FT RRAMDPVFVDVTQNEMAMVTRKALVKFNNDATACFDRILVHLLSLCLQSFG FT CPKKLTKILGELLRVAKYAIKTGIGISKETYQHSDESPAFGSGQGSAASAQ FT GWTKLVSMLFDIHDKYGHGCKYEDPWRLYSEIIGMLGFVDDNNITNNGEDW FT ETVNDIIIRTQHDAQLWNDLLRATGGALNLDKCFAQVLAFQFGLNGAPVIA FT PADPTNIIIIKDRQNNKEVIIKPISPYTTYRFLGTEQGTSKNQKSQQGKLV FT KTSATHNRKLACSAMSPRCAWVHYTAVFLSSVGYPLSMCHLSQHQLHDLQK FT KYIPTLLNKIGIARTHAHALVFGPRAYGGVGCNDLRIEQGLDAVQNLIRQL FT RTPGYGKQLATIFLRTFQHASGLSKPLLQYPGIRAPHLEGHYYVHIRRFLA FT KHRASLEIECIPESIDERIGDTYIMDVVCAPEAAQTLDRTKLKHYTDAEIN FT QIHYCKSYLQVKRISDLCTADGAFILPSIAKGERSIRQCTSKLNEITQERP FT GDQSWTVWRKFLKTICKPSSNQGSNPESTESSLFAPRTKPRPNEPGSEPGP FT SSRLNLSTEPRTEPTPMENRDALIENEGLQQRKEVIDKVSTGTFILKYWVG FT VPFRGIVMNNTGKYYKILYEDGDEEELNHTEVVKYEKKYREEGRMTGEIGQ FT RMRLTKPLGDWLVQANDSERLWPFYYSEETDTLYRSYRKEWHTNGEYYYDC FT HMIADNDTYNYVPEGNVERLPNDASPTDVMDTEDGWRISKHHPVRQQEEEH FT VESKTIMQYLQSQEEHVSQYYAEINFFTTPYEVYELIKSPRKYNIATDGGA FT IPLKGSLGFVVADEDGTILLSCYGQPSGNDPLSFRSEICALLAAAKLLQLI FT TEYYDNQIQCEEPARGKIQVYTDSLSMIKKLEAYDEYPTAHLKTVLNSEWD FT VLSALSRTLKKFRTYPKLSWVKSHQDDLVFDEKAMPLEAYLNSEADELATI FT GLKRLQEKPTVPMDPNTCIQFHIEGRTITRNFKNTVREIILLKPLRKFYCE FT RFKWSDNIFDLIDWDVFRPVYKKHLATKGIAWMHKFCIKKLPTGERVHKRD FT HFHDKRCASCLDDEDDDHILQCDNRRSVRKKVVNQINVLRKTVDKNLCDIL FT QEGLMAYFKGDCMSNTMFRIRGGKGMERYKNLIDEQTVIGWDNLLRGKFSK FT EWRIQQKAYKTRLRLVDPIEYDRMKRQKKRQQEQHNDANNNNKTTKSKNKT FT EEFHGFFQSIVPIILEMWTDRCIDRNTPVLGGRIVAEYESLCKRITHLYTL FT REMVLPEDEIKIYDETLLSKLADTNQQLKKWINRWRPVIDHSMKRVKELAQ FT DNSIPIWQHFTANKPAKTKVSRKTTKQSKPKKYSNNPLTNVYTRLKKKRSS FT SRVLPVIKKIKHKVNHLISTLYNKLGKKRSTSREQTALEVGKQIIDDRFGD FT EPK" XX SQ Sequence 10593 BP; 4493 A; 1926 C; 2148 G; 2026 T; 0 other; aattccagct ggaattaatt gaaaacgcgc acctcaagtt atatcactta aataccctca 60 gtactgaaac tacgtagaat cctacgtgaa tctctgaacc aaccctctaa aagagactgt 120 tgacgatgat aactaagcca ttattaatcc gtcaaggatg gagccacacc aatggagaag 180 acatgtatga caacgtatca ataggatcca ccaaggaagt acaaagtggg ggcaaattgg 240 accaaaaatc gatgaaattg aaggaaaaca gtgaaaatgg aattataggc attagcgaca 300 atggtaaaat acctgacacc gatgaacaag gatggacaaa gatcaatgca agtggaggac 360 gtaaacccaa aacaacaacc atggaaaggc caatcattga ctcaatcata acaactattg 420 atatcgaaac taagaaggtg aagaatggaa caatggaagt caaaattgag tcaccagtac 480 gtagcaaccg atgtaacata cccgacacaa cagtaagata cgacgacgac aaatcagcag 540 atacaaccaa acaactaatg aatcaagtac caacaacaga agaagaagaa gaagaagacg 600 aagaagaaga tgaagatgaa gatgaagaag aagaagaaga agaagaagaa gaagtgaaga 660 aaatcgaaac accaacacga acaaccagaa gcatgatcac cgatggaatt gaatttgaac 720 ttaacagtag aaaccacagt gaacaacgtc taacaccacc gcgaattgaa gagaagaagc 780 aagaagaaga caaagaagat aaagaagaag aggagaggta caagaaagaa aaacataaca 840 ataaaaagaa taaaaatatt acaaacacac caacaagtga agaaaaagaa ctaggaaaag 900 aaagaatagt aacaatggca aatgaacaag caggagacaa tgaaaacaga agattagcaa 960 cagatcgtac gacagatcaa atgcaggagg acaatggaga tgatacagga aataacaacg 1020 gaaatgaagg aaacaacgga aataatgcaa gcggaattag tggaaatagt ggaaataatg 1080 gaaccaacga cgacaacaac aacaacaaca gcaataataa caacaacaga aagagaggag 1140 gacgtgcaaa agtatccata gtagaaccaa cagacatggc aacatatact tttacaattg 1200 catggagacc agaaaacaaa gcaggtaaag atggaaaaat tattataaag aatgtaatga 1260 gagaaatgca gcacagagaa ccaacaatta tattccaccc aacaaattca gctacatcac 1320 cagtaccaag agacatccgc aacataaaca atgattttcc caaaacacca gcaacatttg 1380 atgatttctt tgatcaaaat agaaatagag acaatacaaa tcaacaaaca ttcatgaaag 1440 tatcaatgcc acacaatgaa aaagagctac aaaacaaaat tcataactat ttataccata 1500 atcaactgta catgaacagt ccgttcatta atgacaacac actggaacat gttggatttg 1560 ttgaaaaagg acatagcaga ttagtattca gaccagcaat ggaaaagaaa atacaaaatg 1620 gaattaaaga cattatgaat ggagatcaac ttacacctca acaaatagca caaataaaga 1680 acctgtcaag tgatgttaga gtggaatgcc accgaggaac agtaagagga ggagcatata 1740 ccaaccaatc tgtatgtgaa ggaatagtac taaagacgac aaaatcacaa gcaaaactgg 1800 tgatggaact actggcaatg ctaccggata acctccttgg agagcactat agaatctgcc 1860 ccaaaagtgt aaatcaacac cttggattcg aattatatgg acaaatagta gctgatacag 1920 ccaacttcca acacaaactc caaccgatca ccatactaaa ctgccacccc agtgtctttg 1980 atgatatgta tggcaatgta aaggtagtga attctacaca ggtgaaagta aaacaattta 2040 tactaggaaa ctgtggagct atatcaattg aagagacaaa tgaaactgca acaaaaggga 2100 aatatatagt aatagtacca gcaaataaag tagattcagc aagaaaagca attgggaaaa 2160 tgtttcagga gttccaagaa agtagtgaca gaccagcagc attggaatgc atcaaagcat 2220 atgaaaatta tccattagtg aatgatactg taacaatcag cggacatgca gaaaacctag 2280 cccaaaagat cagagaaaga tacaaaaata aacccaaaac accaattcga actatgcaga 2340 gctcacagta ctcgtaccat ggaagcgtct caatggaaga acaaaatgct ttgcaagcag 2400 cagcagcagc agtacctagg agtatcatta agaaaggaag gcataacatc aatctagcac 2460 taccactaca acaatggcct tctccaccag cagtacacca agcagcaacg acaacaacaa 2520 atcaagcaga aataggaaca gttatgtcaa atctttcacc ggatgattca gcaaaaacaa 2580 tgatgacaaa tgtatcaaag atggtagaat cattagggac tgtagtaact acaatggcaa 2640 aagaaacagc aaacacaaat gaaacgatga aacaaatgat gatacaacaa gcaacaacaa 2700 tgaacaacct tatgatgata atgacaagga atgaagacag acgacaggga acaccaataa 2760 gtataagtga aatacaacca gtaatagatt tacaacaagg atctactcca gcgagcacgt 2820 taacaaacag ccaatacagt ctatcgcaag aacaatcacc aagctccaac aaacgaccaa 2880 aacatggact agacgatgac gaaacaacag cattatcaac agtagaaaat ggagatggta 2940 caacagaaga catgatagaa gaacaaatgg aagcgactac aaatgaacaa tcaaatgatg 3000 taacaatggg agataatgat gaacaaacaa cagttgaaac aacaaacaca gcaaacgtcc 3060 caggagattt cagccaattt aataataata ataataataa caaacaagca acaacaaata 3120 catctgcaaa gacagatatg aacccaccaa atgaatagag gcgacgatga tgatgagacc 3180 aatgaggaga agaaaatagt agcatcaaga aaacaattta aagaacacaa caataatgaa 3240 tcaaatatac cagagttaat tagtagatat ggtgctgttg aatcatcaga tgatgatagc 3300 agtgaagaag acaccccacg acgacgagag cagctaccga ttgaaacgag actggaaaaa 3360 ttaaaagaag cgatagaaag aataagtagt gtacagagag gaaatagaat gccaggactg 3420 caggaaagga atagagaaga tagtgatagt gagagtgata atgaagagga agatgataca 3480 gtaaaatgcc aggattacag gacagagaca gagaggacag tgatagtgag gatgacgagg 3540 actttcaccg aaatagcgaa agaaaaagcc aaataaggac taaagtatcg cgaaaggaac 3600 gaagtagtga aggaataaac actaaatcag tacgaaatag tgaagaatta aggactaaat 3660 tatcgcgaaa ggaacgaaat agtgaattaa ggactaaatt atcgcgaatt gaaaaatcta 3720 gtactatcaa cgatgaggtt gcaaccactg tatcaatgga aacaacaaca acaagagcaa 3780 taggagatag cagcgactac ggaaccgaaa tcaacagtga agaagaccta ttctttgagc 3840 caagcgacga cgaaggtgaa gaagaagata gtgtacagaa taataataat tataacaatg 3900 aaaatgaagc atcgacaaca acaacaacaa caacaacaac aacaaccaca acaacaccaa 3960 catcaacaac accgaagaca atgaagataa cacaagaaaa cctaccattt ggacatatct 4020 gtgatgatgt agcaataggc aatgatacac catatgtgcg agtatactgt caaaatgtat 4080 gtggaatata tgatagagat ggtataggat tagactcggc attcaatgaa atgaaacagg 4140 caggagctga tatatttaca ttcaatgaga cccacggaga tgaatcaaat gcaatggcaa 4200 gacgggctac aaaaatgtca aaacaaagaa tgtggagaga taacaatgaa gattgcaaaa 4260 tattacattc atcatcaaca gcacctgttc taagcttcac aaaacctgga ggaaatatgg 4320 taggaataac tggatcatta gtgggcagaa taagagaaac aatcacagat ccgtatggca 4380 gatggtgtgg ctacacactg ataggaaaag ataacaaaga gataatggtg ctaacagctt 4440 acaatgtatc acaacacaaa aatgcaaaag taggagatga tacactgtac aaccaacaaa 4500 cagcattata taaattaaaa gacattagag atccagatcc aaagaaatta tttatagaag 4560 acttaacagc actagtaaag aaggcaagga tggaagacaa agatatcata ttaacaggcg 4620 actttaatga attagtagga gatgatccga acggtatggt gaaagttata tcagcaggag 4680 gacttacaga tgcacacagt catcaacatg gtatagtaga cataacaacg tatacaagag 4740 gagtcaaaag attagattat gtatttgtaa caccaaggct agtagaccac atacttcgaa 4800 gtggatacga acccttccat gcaagaatag catcagatca cagaggctat tttgtggact 4860 ttgcactagc tggattccta gacagacagt taccatcgat attctcagca tcatcaagag 4920 caatcagagg aacccatcca aagaacatca caaaatatgt ggaacacctc cataaagttt 4980 tcaagatgag agatatctac aggagagtaa aattacaaaa gaactggtat gaaaagaaga 5040 aattagaagc actagacaga gaaataacag cagtgatgct agaagcagaa gaacagtgca 5100 gaatacatca tagagaacca tggtcagagg aagtgaatga agtgatgaca acagcgaaca 5160 tactgcgaat ccacttgtca agtctgaaaa acaatatcga ttgcagcaac caaatacagc 5220 aaaagcagct cttgttgaag aaccaaatac aactcccaga agacattgca gaggcctcca 5280 aagcgctgag tatagcacag aagaaaagaa ggaaactaat aagagataac agaacaaaga 5340 cgactaacat cggagaggaa caagaagcag catatgtagc aatgaacccg gaaatggatg 5400 caaaaagagc agcacagata ttccagagag caagagatac aaaacagatg atgtcggagt 5460 taccatcaaa aatgaactgc ccggggggcc tatcagctgt actggtacca ctaccaaaag 5520 aaggaattga gcttgagtac ttagcaataa cggatggacc aacaattgaa agagtaatac 5580 tggagaagaa tattagacac ttcaggcaag cagaattcac accattggca tcaccagagg 5640 taataagaaa gataggattt ggagcagata cggaaacagc agaacaccta cttgatggaa 5700 ctggtgatcc aactgatata acagatgatg aatggtcaag atttctacta acatcaatga 5760 aaagaaattc agaagaacta aaaatagaga taacagcaga gaaaatgatg gagaagtata 5820 gaagatggaa agaacgaaca agcacatcac catcaggcag gcacttggga cattttcatg 5880 cactatttcg accactaaag gcaaagaaca agaaagatcg tgaacaattg gatgatatca 5940 gacaagacat aattgactta catgcaacaa tgctgcagac agcgtatgac aatgagcatg 6000 tctacaaacg atgggagtac atcctcacct gcatgctggc aaaggaatct ggaataccaa 6060 gaatacacag actgcgagtg atacacctat atgaatgtga cttgaaccta ctattctcat 6120 tattcttcag agaactggac caacactgtg aagataactt cctactcaac aagggagtgt 6180 atggatgccg accgaataga cgagcaatgg acccagtctt tgtagatgta actcaaaatg 6240 aaatggcaat ggtaacacga aaggcactgg tgaaattcaa caacgatgca acagcgtgct 6300 ttgacagaat attagtacac ttactcagtc tgtgcttaca atcatttgga tgcccaaaga 6360 aactaacaaa aatattagga gaactgctaa gagtagcaaa atatgcaata aaaactggaa 6420 taggaatatc aaaagaaaca taccaacact cagatgaatc acctgcattt ggatctggac 6480 aaggtagtgc agcatcagca caaggatgga caaaattagt atcaatgctg tttgatattc 6540 atgacaagta tggacacgga tgtaaatatg aagacccatg gagactatat agcgaaataa 6600 ttggcatgct aggatttgtg gatgataata atatcacaaa caatggtgaa gactgggaaa 6660 cagtaaatga tatcatcata agaacacaac atgatgcaca gctatggaat gatttattgc 6720 gagcaacagg aggagctcta aatcttgaca agtgctttgc acaagtacta gcatttcaat 6780 ttgggctgaa tggagcacca gttatagcac cagcagatcc aaccaacata ataataataa 6840 aagatagaca gaacaacaaa gaagtaataa tcaaaccaat atcaccatac acgacgtatc 6900 ggttcctagg tacggaacaa ggaacaagca agaatcagaa gtcacaacaa ggaaaattag 6960 tgaaaacatc agcaacacac aacagaaagc tagcttgctc agcaatgtca ccaagatgcg 7020 cttgggtcca ctacacggca gtatttctaa gcagtgtagg ctacccactc agcatgtgtc 7080 acctcagcca acatcaactg catgatctac agaagaaata tatcccaaca ctactgaata 7140 aaatcggtat agccagaaca catgcacatg cactagtatt tggaccaaga gcgtacggag 7200 gagtaggttg taatgaccta agaatagaac aaggattaga tgcagtacaa aatctaatca 7260 ggcaactacg aactccaggc tacggcaaac aactagccac aatcttccta cggactttcc 7320 aacatgcatc aggactatca aaaccactac tacagtaccc cggaataaga gcaccacacc 7380 ttgaaggaca ctattatgta cacatacgaa gattcctcgc aaagcacaga gctagtctag 7440 aaatagaatg cataccagaa tcaatcgatg aaagaatagg agatacatac atcatggatg 7500 tagtatgtgc accagaagcg gcacagacat tggatagaac aaaactgaaa cactacacag 7560 atgcagaaat caaccaaatt cactactgca agagctatct acaagtaaaa agaatatccg 7620 atttatgcac agctgatgga gctttcatac taccatccat agcaaaaggt gaaagaagca 7680 taagacaatg tacatccaaa ctgaatgaaa taacacaaga aagacctgga gatcaatcgt 7740 ggacagtgtg gagaaaattc ctgaagacaa tatgcaaacc cagttcgaac caaggttcaa 7800 acccggaatc aactgaatct agcctatttg cgccaagaac caagccaaga ccaaacgaac 7860 caggatccga acccggaccc agctcacgac tcaacctatc caccgagcca agaaccgaac 7920 caaccccaat ggaaaatagg gatgccctca tcgaaaatga gggactgcag cagcgaaaag 7980 aagtgataga caaagttagc actggaacgt tcatactcaa atactgggtc ggagtaccgt 8040 tcagaggcat tgtaatgaac aatacaggca aatactacaa aatactatat gaagacggcg 8100 atgaagagga acttaatcat acagaagtag taaaatatga gaagaagtac agagaagagg 8160 gaagaatgac aggtgagata ggacaacgga tgagactgac gaagccacta ggtgactggc 8220 tagtacaagc caatgattca gaacggctgt ggccattcta ttattcagaa gaaaccgaca 8280 ctctatacag gagctacaga aaggaatggc acaccaatgg agaatactac tatgactgcc 8340 acatgatagc agacaatgat acatacaact atgtaccaga aggcaatgtg gaaagactac 8400 cgaatgatgc atcaccaaca gatgtaatgg acaccgaaga tggatggaga atatcaaaac 8460 accacccagt aagacaacaa gaggaagaac acgtggagag caaaacaata atgcaatatc 8520 tacagtcaca agaagaacat gtatcacagt actatgcaga aataaacttc ttcaccacac 8580 cgtatgaagt ttatgaacta ataaaatcac caaggaaata caacatagcg accgatgggg 8640 gggcaatacc actcaaagga tctctgggat ttgttgtggc agatgaagat ggaaccatac 8700 tattatcttg ctacggacaa ccatcaggaa atgatccact ttcattcaga tcagaaatat 8760 gtgcactact agcagcagca aagctattac aattgataac agaatactat gacaatcaaa 8820 tacaatgtga agaaccagca agaggtaaaa tacaggtgta cactgacagt ctaagtatga 8880 taaagaaatt agaagcatat gatgaatatc caacagcgca tctgaagaca gtactaaatt 8940 cagagtggga cgtactttca gcactgagta ggactttgaa gaaattcaga acatatccaa 9000 aactaagctg ggtaaagagt caccaagatg atttggtttt tgatgagaaa gcaatgccac 9060 tggaggctta tctgaactca gaagcagatg aattggcaac gataggcctg aagagactac 9120 aagaaaaacc tactgtacca atggatccaa acacatgcat acagttccac atcgaaggaa 9180 gaacaataac aagaaacttc aaaaacacag taagagaaat aatactacta aaaccactac 9240 gaaaattcta ctgtgaaaga ttcaagtgga gtgacaatat ttttgacttg atagattggg 9300 acgtatttcg accagtctac aagaaacacc tagcaacaaa aggaatagca tggatgcata 9360 aattttgcat aaagaaactt ccaacaggag aaagagtaca caaaagagac cacttccatg 9420 acaagagatg cgcatcatgt ttggatgatg aagatgatga ccacatcctc cagtgtgata 9480 acagaagaag cgtaagaaag aaggttgtca atcaaataaa tgtactgcgc aaaacagtgg 9540 acaagaactt gtgtgacata ctacaggaag gtttaatggc ttacttcaaa ggggactgca 9600 tgtccaacac catgttcaga ataagagggg ggaaaggcat ggaaaggtac aaaaacttaa 9660 tagatgaaca aacagtaata ggatgggaca atctgttaag aggaaaattt tcaaaggagt 9720 ggagaataca acagaaagca tataagacaa gactacgcct agtagatcca attgagtatg 9780 ataggatgaa aagacagaag aaaagacaac aagagcaaca caatgatgca aacaacaaca 9840 acaaaacaac caaaagcaaa aataaaacag aagaatttca tggtttcttt cagtcaatag 9900 taccaataat attagaaatg tggacagata ggtgcattga cagaaataca ccagtattag 9960 ggggcagaat agtagcagaa tatgaatctc tatgcaagag aataactcat ctgtatacat 10020 taagagaaat ggtattgcca gaagatgaaa ttaaaatata tgatgaaaca ctactatcaa 10080 aacttgcaga cacaaaccaa caattgaaaa agtggatcaa cagatggaga ccagtaatag 10140 atcatagcat gaaaagagtg aaggaactag cacaagacaa cagtataccg atatggcaac 10200 acttcactgc aaacaaacca gcaaagacca aggtatcaag gaaaacaaca aagcaatcga 10260 aaccaaagaa atattccaat aatccattga caaatgtgta caccagatta aagaagaagc 10320 gatcatcaag tagagtactt ccagtaataa agaaaatcaa acataaggtt aatcatttga 10380 tatcaacatt gtacaacaaa ttgggaaaga agagatcaac tagcagagag caaacagcat 10440 tggaggtggg aaagcagata attgatgaca gatttggaga tgaacctaag taataaataa 10500 atgtagaata aatttggcgg gtagattgtt gactttctgt ctttctaaga ccttaaggag 10560 caaagctgca gctattaaat aataagttat ata 10593 // ID Copia-1_HAE-LTR repbase; DNA; PLN; 307 BP. XX AC ABWE01000045; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_HAE_; KW Copia-1_HAE-I; Copia-1_HAE-LTR. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-307 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000045; Positions 89666 89360. XX SQ Sequence 307 BP; 93 A; 61 C; 69 G; 84 T; 0 other; tgttgttgaa gatgcgcctc gtccagtgag cgacaaacaa aaggtacagt ctggcgatta 60 gcagtgcgcc tatcccatga gtaataccag tagtgtggat tactcatgtg caactatctg 120 atgagtaatg tgtatagagt agattactca tgcgcgacta tacaacgagt aatgcgcgta 180 gtgtcgatta ctgttgtatc gtcgaagaat ccattcggct tatagtagca acaagaagtt 240 gcgaactaag gacctaaata tattcagttt gcattttgca ttcacctcga caagcacatt 300 aacaaca 307 // ID Copia-3_HAE-LTR repbase; DNA; PLN; 209 BP. XX AC ABWE01000125; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_HAE_; KW Copia-3_HAE-I; Copia-3_HAE-LTR. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-209 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000125; Positions 46743 46951. XX SQ Sequence 209 BP; 66 A; 35 C; 44 G; 64 T; 0 other; tgatattaca ccgctaagca ggtatgtttc atgttgttag gataatgatt tatatgataa 60 atcatcagga tgttttatgg tagtttcaga ggattgccat ggaacagcgt tgcataaagg 120 cttagagata gctcatggta gtgaactaag gaccgtaaat atatttactt cggcatttgc 180 ctccaacaca acaaccgact acgttaaca 209 // ID Gypsy-28_PIT-I repbase; DNA; PLN; 5147 BP. XX AC AATU01002213; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_PIT_; KW Gypsy-28_PIT-LTR; Gypsy-28_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5147 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002213; Positions 179857 174711. XX CC 'GGCTC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 201..2201 FT /product="Gypsy-28_PIT-I_1p" FT /translation="MQGAGAPVFTPIVAPEITSISHEALTDWTNKRRHYES FT KLRARCRATGENYDNIVQSARDSMDPDLLDVLCELRLSEDVANVNDDMLIA FT EFALILSSVKNDTLPDVKALFRSKLRMNLTESDVDARVLDYFNQFRKLVRE FT NGLGACFEGDGGNEAKCKQLVASLHPAALKEEVEQCLQYTHKQAASIPRLL FT FDLVVEKAKEHERQFLRQRNKKRDRDEDLQKKKNPEGKKKIRTGENTEDSS FT RKVAKTNSISKTNSISKTKTKSKSKKLPPSPCPKCNEMHWLNECPNATEDE FT KVELRKRLREANAAKRTRTKRLGEFLPTPSRAVMVNGVLEIPYCADSGSDH FT TVMGRSHWNQLRALDPSVQAEELTVTVQNQTFGSMLVTADKKAKLHLMIRT FT AAGQVKPMKAVDVLIVDMDDDEFILGNDVLRMLGIDVERQLEQLADLNVDE FT TSGDPVELEADESPVRIGEPQSENEDVFAAVERLVEHAVENGFPADKLDRF FT RTIIHAYDVWRLTLQDDPPARVPPLEIRLREGARPTRCKPRRYPPHIRKFL FT HEFNSRLVKLGLVYENSESRWASPVLPVKKSADLMDLRQTTDYRELNALTE FT VMAAAMPILSVVMENAKGMKHFGLFDFLKGFWQLPLALMCQELLSYMTDEK FT VFTPRRVPQGSSDAAIFF" FT CDS 3117..4610 FT /product="Gypsy-28_PIT-I_2p" FT /translation="MISRWAGNHSPTVKRLKVARARPNQRTETVSALRPLD FT DDRFVWPTLVELKEIQAKNSAPVHANRNDDGLVTLEDKLWIPYEEKELLQR FT LCIIAHCGAQGHRGQQAMIAHLGRLFAIEHLSDVVANFVKKCLLCLHSRGG FT KIIPRPWSEVIECRTRNGVLHFDFLYMGESFGGSKYLLVMKDHATHYCGLV FT VADSAESSVVVEALLDWHSRFGVPPEWVSDCGTHFKNEIVAELSRRLRSKQ FT SFTLAYSPWVNGSVERVNRDVLQVVRAMILTYKIGYKDWVYLVPVVQANLN FT HTALPSLGNRAPVELFTGLPRPTPLCEFYLPVKNKLQQIPQSEQIDDYLNR FT LRSSLQKMHEAVEDKRLKQRLLNKKRERGENLVNFHVGDYVLRSRTDEKRG FT NKLQVNWVGPYRVTRADSHSFRVEHLITGEEHDVHPSRLKMYADDSLNVTD FT ELLEHVAAQGIILAVKELKGHKWNNATKDFDILVSWKGPTVDRRLLRTHAS FT FE" XX SQ Sequence 5147 BP; 1386 A; 1175 C; 1369 G; 1217 T; 0 other; aagaattctt tagtggaaaa agtgttttct ttggtacaag tccagctgcc tgtaccaaga 60 gacaagaaca agtacaagag cctgtttctg ccgtcgtgac tgtagttttc ttttggcgcg 120 accgaagcga gccgctaagg gcccaagggt taatcgtgtt tggcgtgagt gggactgaac 180 ctcaacaagt accagccagg atgcaaggag ctggtgcacc ggtatttaca ccgatcgtag 240 caccggaaat tacaagtatc tctcatgaag ctctgactga ttggacgaac aagcgccgtc 300 actacgagag caagttgaga gctcgatgcc gcgctactgg agaaaattat gacaacatag 360 tccagtccgc tcgcgactca atggatcctg atttactgga tgtactttgc gagctgagat 420 tgagcgagga cgttgctaac gtgaatgacg acatgctgat tgctgagttc gccctcatcc 480 tctcaagcgt gaagaatgac acgctccctg acgtcaaggc attattcaga tccaaactga 540 ggatgaatct gacggagagt gatgtcgacg cccgtgtgct ggactacttt aaccagttcc 600 ggaagttagt gcgcgagaat ggtctgggcg cctgctttga aggtgacggg ggtaacgagg 660 caaagtgcaa gcaactcgtg gcctctcttc acccagcggc tctcaaggaa gaagtggagc 720 agtgtttgca gtatacgcac aagcaggccg cctcgattcc aagactgttg tttgacctcg 780 tcgttgagaa ggcgaaggaa catgagcgcc agtttctaag acaaaggaat aagaaacgag 840 atcgcgatga agatctgcag aagaagaaga accccgaagg aaagaagaaa atcaggaccg 900 gtgagaatac ggaggactct tcaaggaagg tggccaagac caatagcata tccaagacca 960 atagcatatc caagaccaag acgaaatcga agtcgaagaa gctacctcca agtccgtgtc 1020 caaagtgcaa tgagatgcac tggctcaacg agtgccccaa tgcaactgaa gatgaaaagg 1080 tggagctgag aaaacgcttg cgtgaggcga atgcagccaa gcgtacaagg accaagcgcc 1140 ttggtgagtt tctaccgact ccatctcgtg ctgttatggt gaatggagta ctggagattc 1200 cgtactgcgc tgacagtggc tctgaccata ccgtgatggg ccgctctcac tggaatcaac 1260 tccgggcttt ggacccaagt gttcaagctg aagaacttac tgttactgtt cagaaccaga 1320 cgtttgggtc tatgttggtg actgccgata agaaggccaa actccattta atgattcgca 1380 ccgcggctgg gcaggttaaa ccgatgaagg ctgtggatgt gttgattgtc gatatggatg 1440 acgacgagtt catacttggc aatgatgtac taagaatgct tgggattgat gtggagcgtc 1500 aactggagca actagctgac ctaaatgtgg atgaaacaag tggcgatcct gttgaactgg 1560 aagccgacga atctccggtc cgaattggag aacctcaatc tgagaatgag gacgtatttg 1620 ctgcagttga acggttggtt gagcatgcag tcgagaacgg attcccagca gacaagctcg 1680 atcgatttcg tactatcatc catgcctacg atgtatggcg tttgactctg caggatgacc 1740 caccagcacg tgttccacct ctggagatac gactacggga aggggctcgt ccaacaaggt 1800 gtaagcctcg acggtatccc cctcacattc gcaaatttct tcacgaattc aactctcgtt 1860 tggtaaaact aggactcgtt tacgagaatt cggaaagtcg atgggcgagt cccgttcttc 1920 ctgtcaagaa gtcagcggac cttatggatc ttcggcaaac cacagactat cgtgagttga 1980 acgcattgac tgaagtcatg gcagcagcta tgccgatttt atccgtggtg atggagaacg 2040 cgaagggaat gaaacatttc ggactctttg attttttgaa gggcttttgg cagcttccgt 2100 tggctctaat gtgtcaagaa ttgctttcat acatgaccga tgagaaggtt tttacccctc 2160 gcagagtgcc tcagggtagt agtgatgctg cgatattctt ttagaagacc atggagaatt 2220 gctttgccag tctactgtac gaccatttac tgatttggat cgacgactta ctcctttatg 2280 ccaaggatat tgatgtatat ttggacaagt tggaagaaat gctgtcacta atggaccact 2340 ttggcttaaa gctgagtgca aagaaaacga gcttgtacca gactgaggtc aagtggtgcg 2400 gcaggatcat aagtggtgaa ggcatcagac atgacccaaa ccgaattgac tcgctacgtg 2460 ctttgccata cccacgtact gccggagagc ttcagcaatt tgtctgtgcg gtcaattgga 2520 tgtgtcaaag cattattgat tttgcaaggc agatttcccc tttacaacaa aaacttgacg 2580 cggctctcac gaaaaccaag aggaccaaga gggcggctgc tggcattaac attgagctga 2640 gcagtgatga acgagtggca tttgaccgga ttaaggattc gctcgccaaa gctgctactc 2700 tcgattttcc tgatgacaac gctaccacat gtctcttcac ggatgcctcg aacgttggat 2760 tcgccgttat tgtgactcaa gttggggact tcgaccctca gaagcctgct acagagcaac 2820 aacatcgtct cattcactgc acaagtggaa cgtttgccgg tagccagcta aactggactg 2880 tcatcgagaa agaggcattc cccattatcg ttgcctgtga taaactggat tacttgctac 2940 taaggccaaa accctttcgg atgtattgtc tccatcgtaa cctgattcac atcttcgcac 3000 cggacgtttc gatcaagaaa catattaaag ggaaactttt acgatggtcc atgaagctaa 3060 tgaactacta gtatgtagtg gagcatgtac cgggatctaa taatgtatgg gccgatatga 3120 tttcccgctg ggctggtaac cattcgccaa ctgtgaaacg actgaaggtt gctcgggctc 3180 gcccaaacca aaggactgag actgtgtctg ctttgcgccc tctggatgat gatcgttttg 3240 tgtggcctac actggtggaa ctcaaggaaa tacaagccaa gaactcggct cctgttcacg 3300 ctaatcgaaa tgatgatggt ctcgtgaccc tggaggacaa gctgtggatc ccatatgaag 3360 aaaaagagtt acttcagcgg ctgtgcatca ttgcgcactg tggcgctcaa gggcaccgcg 3420 gccaacaagc catgattgca cacctgggac ggcttttcgc tatcgagcac ctctcagatg 3480 tggtcgcaaa tttcgttaag aagtgtctgc tttgtctgca ttcaagaggg ggaaagatta 3540 tcccacgtcc gtggagcgag gtgattgagt gtcgtacacg taatggtgtt cttcattttg 3600 actttcttta catgggtgaa agctttggag gcagcaagta tcttttggtt atgaaggatc 3660 acgccacaca ttactgcgga ttggttgttg cagactcagc cgaaagtagt gttgtggttg 3720 aagctttact ggattggcac tcgcgattcg gtgttcctcc tgagtgggtg tctgattgtg 3780 gaacccattt caagaacgag attgtcgccg agctgagtcg ccgtctccgg tcgaagcagt 3840 cattcacact tgcgtatagt ccgtgggtta acggatcagt tgaacgtgtg aaccgggatg 3900 tactacaagt ggtgagagca atgattttaa catacaaaat tggatacaaa gactgggtct 3960 acttggttcc ggtggtgcaa gccaatttga accatacagc actcccatct ctcgggaatc 4020 gagcgccagt cgagctgttc actggactgc cacggcctac acccctctgt gaattttatc 4080 taccagtgaa aaacaagtta cagcagattc cacagagcga gcagatagac gactacctaa 4140 atcggttgag aagcagctta cagaagatgc atgaggcggt tgaagacaaa agactgaagc 4200 aaagactttt gaacaagaag cgcgaacgag gagagaatct cgtaaacttt cacgttggag 4260 attacgtctt gcgatcccga acggatgaga aacgtggaaa caaactccaa gtgaattggg 4320 ttggaccgta tcgagtgact cgggccgatt cccactcctt tcgtgtagag cacctgatta 4380 caggagaaga acatgatgtg cacccttcac ggttaaagat gtacgcagac gacagcttaa 4440 atgtcacgga tgagctactc gagcacgtag ctgctcaagg aatcatctta gcagttaagg 4500 agctgaaggg ccacaagtgg aataatgcta caaaggactt tgatatttta gtaagctgga 4560 agggccctac agtcgatcga agactcttac gaacccatgc aagttttgaa taaggacatc 4620 aagattttat tgaagagata tgtggacact gctgaagacc ctcgtctcac ggatcactgg 4680 aagaagatag atcgtgagaa cggcagcacg gcgtctacac ctcttgaatc agcgaagggc 4740 aagaagcctc gtggccgccc tcgcggcaga aagaaacaaa gtcaccccga tggagaaacc 4800 gtccggcgtg acagcgacga cgcggatgag gtacaacctc gaagtgtcca gcaaacagtt 4860 cagcgtactt tggatgagga cagccaagag cacaccggtg ccgaggacca agatcctcag 4920 cttcctctag gtcgtcgaac tcgatcaatg atgacagcca ccgtgggcca agttccgcgt 4980 gtccgcagtc agcagagatc tcgagcaccc agtcagcgcc tcaagaaacc agtccggttg 5040 taagcgtcag acgcttgtta gccgttggtc atgcgctctg ggtgatatcg ccacaacctt 5100 cgcaagtcga gcggaggggt agtggggaaa ccaagcttcg ggggctg 5147 // ID Copia-1_AL-LTR repbase; DNA; PLN; 155 BP. XX AC FR824375; XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Albugo laibachii genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_ALN_; KW Copia-1_AL-I; Copia-1_AL-LTR. XX OS Albugo laibachii OC Eukaryota; stramenopiles; Oomycetes; Albuginales; Albuginaceae; OC Albugo. XX RN [1] RP 1-155 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Albugo laibachii genome."; RL Direct Submission to RU (16-MAR-2011). XX DR Genome; FR824375; Positions 23452 23606. XX SQ Sequence 155 BP; 59 A; 34 C; 27 G; 35 T; 0 other; tgttgagcaa acagagagct cgactattac tgccaatcag aatgaggcag aagaatctag 60 gtaaaagtag gactaaaaat agttagacga actaaggatc ctaatatata taattacttt 120 ccaaaacccc cctccagcga ttcgccactt caaca 155 // ID MAGGY_I repbase; DNA; PLN; 5132 BP. XX AC L35053; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE MAGGY_I is an internal portion of MAGGY, a gypsy-like LTR DE retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; MAGGY_I; MAGGY_LTR; gag; pol; protease; KW reverse transcriptase; internal portion. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-5132 RA Farman L.M., Tosa Y., Nitta N. and Leong A.S.; RT "MAGGY, a retrotransposon in the genome of the rice blast fungus, RT Magnaporthe grisea."; RL Unpublished (1994). XX DR GenBank; L35053; Positions 254 5385. XX SQ Sequence 5132 BP; 1348 A; 1635 C; 1218 G; 931 T; 0 other; ttacgtagct ccttcattag gtgcccgcga tgcctgcgtc actgcaaccc ccgatcttaa 60 ccgattcgac cgaggaactg atcgaacacc tacaaagaca ccctgaacaa tgggtgtctt 120 acatctccga ttcctaccaa aagctgcaac tattgcacga tagcaacgtc cgcctgaact 180 cctgcctaga aatgcaggaa gccgagaccc aacgcgcccg cgccgaaacg gaccgtgtcc 240 gcgacaaggc gcaggccgac attctggcca tggccatgga aaaggcctcc gccataacct 300 cccgggatgc cgctttcgcc gaattagaga aaacacggtc cgaactgaag gaagttcgga 360 ccgtaacgct acccacggta cacataacca cccccgcccc aactaccaac acgcctgttg 420 aaccccttat ggttactcct atgggaacga ctccgccgcc tgcttccgaa catcccgcct 480 ccgcccgcct ttctgaacga cttccagacc ccgataaatt tacgggcgcc cgctccgacc 540 tccgccgctt cgccacccaa atccggggga agatgacctc aaacaaagac cgcttcccca 600 accccgaatc acgcctgatt tatatagccg gtcgactgtc cggtaaagcg tacaacctga 660 tcctgcccaa aatggtcgga ggcacacccc aattcggaga ttatacggat ctcctccaat 720 acctagagga ggcattcggg gaccccgacc acgtccaaaa cgcacaaaac aaactatatg 780 ccctgaagca gcggaacgta gatttcgccg agtatctgtc ggagttccaa cgcctgtctt 840 tggaaggaga aatgccggag gatgccctcc cccctctttt attccaggga atatcggaag 900 agctccagga catgctcctc cacaaccccg ccccatctcg ccaataccac gaattcaccc 960 gacacctgca aagcttggat aaccgctacc gccagcacca gcagtataaa aatagacaga 1020 cacgtacccc tcgggccgca gcgccccccg cgcgcgcggc tccccgaacc caacccgaca 1080 taccgcgggc cgcccccaag ccaaacgcgg agctcccgct taacgaccct atggacctga 1140 gcagccaacg ccgccacaac cgcaaggaaa acatgctatg ttaccgttgt ggatcccaag 1200 aacatttcgt tgccaaatgc ccggaaccgg atacccgccg cacgcggctg caccaggccg 1260 gaatcgaacg atccaggtcc aggtccaggt ccccgcgcca aatacaaacc aaactcccta 1320 aaaacccccg ccgcggctcg gacgccagcc gctccagcag ccgaagttcg aaaaacggag 1380 cccgcctggg ataagtcgcc cccaggccgc caaggccgcg catagaccgc cggcgatccg 1440 catctctgcc gccgccgttc acgggttccc cgttgaagag gaatataacc aacgatccga 1500 cctgatgatc ctgcctgccg aactgacagt ggggggccaa aacctcccaa cctatgccct 1560 caccgattgc ggtgcggaag gaaaatgctt cctcgaccaa ggatgggccg aagaacgcca 1620 actacaaatg tatccgctgc gaaacccatt cgacatcgaa gtattcgacg gaaggaccgc 1680 cgaaagtggg aagtgcaccc attatgtccg aggacaattg agaatcaagg accacatcca 1740 gaaaaacgcg ctgttcttcg tcacacagct agcccactac cccattgtgc taggaatgcc 1800 ttggctaaag cagcacgatc caacgattgg attcgcgtca cacgttatta cgtttgacag 1860 cgactattgc cgccgacact gcaatatgcc cgacaaaccg gagaaggtta aagctttaca 1920 cgccgtacca aaaaaaagcc gcccccagta ccaggctgac cgaccgccgt ccctccgcga 1980 aatggatatc gcccctatct ccctgcaagc cgcgagcatg tacgcccgcc gccgatcctg 2040 ccgactgtac gccgtaacct tgaaacagat tgatgaggtc ctagccgccg acccccaaaa 2100 taggaacggg ccgaccctgc ccgaaacaat ccgggaattc gcggacgtat tttccccgca 2160 agaagccgag aagctgcccc cacaccgacc gtccgaccac catatcccgc ttatagaagg 2220 aaaaacgccg ccgttcggcc ccctgtacgc catgtcccgc gaagagctga tagcccttaa 2280 ggaatggctg accgcagagt tgaaaaaagg gtttatcaga cccagttcgt catccgtcgc 2340 ctcgcccgtt ttgttcgtga agaagcaggg aggagggttg aggttttgcg tggattaccg 2400 cgcgctgaat aacattaccg taaaagaccg ttacccgctg ccgctagtcc gagagaccct 2460 gaacaacctg gccggcatga aattcttctc gaaaatcgat atcgtttccg cttttaacaa 2520 tattcggatt aaaaaggggg aagaatacct gacggcattc cgcacgagat tcggcttata 2580 cgagagccta gtcatgcctt tcgggctaac gggagccccc gcgacgttcc agagatatat 2640 aaacgactcc ctgcgcgaat acttagacgt attttgtaca gcctacctgg acgacatttt 2700 gatttatagc cgcacccgaa cagaacacga agaacatttg aaactcgtac tggaagccct 2760 gaggaaagcc gggctatacg ccaacgccgc gaagtgcgaa ttcttcgtga cggaaaccaa 2820 gttcctgggc ctgttggtcg gcgtcgaagg cgtaaaaatg gaccctgaaa aaatcaccgc 2880 tgtcctggac tggcaaacac ccaaaaagct tactgacgta caagcatttt tggggtttgg 2940 caacttttac cggcgcttta tccgagattt ctcaaagatt gtagcccctt tgacgagatt 3000 gaccaagaaa gacgtcgcat tcgaatggaa tagcgcctgc gaaaccgcct tccgactgct 3060 gaagagaaag tttaccgaag cccccgtact ggcgcacttc gattgggaaa aggatgtgat 3120 cctggagacc gacgcttccg attatgtttc tgcgggaata ttgtcacaat acggcgacga 3180 cggaatactc cgccccgtcg cgttcttttc gaaaaaacac acagctaccg aatgcaatta 3240 cgagatttac gacaaagaat tgctagccat tatccgctgt tttgaagaat ggcgcccgga 3300 actcgaaggg acgtcgtccc cggtccaaat aattacggac caccgcaacc tggaatattt 3360 cacgacgacg aaaatgctca accgccgaca agcccgatgg gccgaattcc tgtcaagatt 3420 taatttccgt atcacctacc gacccgggaa acaaggagcg aagcccgacg cactaaccag 3480 gaggtcagag gatatgcctg aggaggggga tgaacgactt aagcaccaaa cacaagtcgt 3540 actgaaagaa cacaatttac ctgcccgccc cacccggtta caacccataa tccgccaaaa 3600 caaaccccta ttgccaagac acctgataga gctactagac gccggatacg aatccgaccc 3660 gataacgcaa tctgccctag aagcgttgag gacaggcgcc gaccgccacc ccaagctgca 3720 attggccgaa tgcgaagaac gatccggcta tttgtattac cgcaatagac tgtacgtacc 3780 cgattcgaat aatctgaaag ccgagatcct gcgccgctgc cacgactccc ccgtcgccgg 3840 tcaccccggc aaagcaaaaa cctacgacct gctgtcccga gaatattact ggcccggaat 3900 gctacattac gtatcattat gggtaaagaa atgccagacc tgccgccgaa tcaacccgtc 3960 ccgcgaaggc caccagggcc tcctgcgacc cctgcccact cctgaacgct catggcaaca 4020 cctgtcgatg gattttatca cacatttgcc gcaaagcaac ggccacgacg ccatcctagt 4080 ggtcgtagac cgcctgacta agatgagaca cttcgtccct tgtaaaggga cctgcaatgc 4140 cgaggacacc gccaacctgt acctacacca cgtatggaaa ctacacgggt tgcccctgac 4200 gatagtttcg gatagaggca cccaattcgt gtcgaagttt tggaaacacc tgacaacccg 4260 tttgaaaatc gacagcctgc tatccactgc tcaccacccc gagactgacg gacagaccga 4320 gcgttttaac gcgtccctgg aacaatattt gagagcttat gtggcctacc tgcaagatga 4380 ttgggaaagt tggcttcccc tcgccgaatt cacagccaac tcccacaagt ccgagaccac 4440 cggaacctcc ccgttttacg cgacttacgg attccatccc cgcatgggat tcgagccggt 4500 acccctgaac cagcctttgc ccgcccagcg ggatgccgaa aagctagccg cccgaatgga 4560 agccattctg gaacaagccc gcgccgaaat gaccgccgcc caagcccgtt acgaagaaca 4620 ggcgaaccga caccgtaccc cggcccgccg gcttaccgtc ggccaatatg tgtggttaga 4680 cgcacggaac atccagaccg cccgcccgca gaagaaactg gattggaaga acttgggacc 4740 cttccgaatt tctgaagtga ttagcccgta cgcctaccgt ttggacctgc cgtcgtctat 4800 gagagtacac cctgttttca atataaaccg actaaaacct gctgacgttg agcccctgcc 4860 gggccaacaa cctgcaccgc caccccattt ggaagtggaa ggtgagagag aatacgaagt 4920 cgaagagatc ctcgactcct tttgggaaac ccgcggccga ggaggccgcc ggctgaaata 4980 tatcgtccgt tgggctggat atagcgaacc cacgactgaa cctgccgatt acctggaaaa 5040 cgctgctcaa ttggtaaaga atttccaccg tcgatacccc cataagcccg ggccccggcc 5100 gtgacggagc tcggcctgga aggggggaat ac 5132 // ID Copia-31_PIT-LTR repbase; DNA; PLN; 222 BP. XX AC AATU01000952; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-31_PIT_; KW Copia-31_PIT-I; Copia-31_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-222 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000952; Positions 31613 31392. XX SQ Sequence 222 BP; 78 A; 48 C; 56 G; 40 T; 0 other; tgtcggaact cacaaaagat ctacatgaga ccaagagacg ctgaggagtc acgcacgcgg 60 atgagatggt gaagatctcg tcattcatga gaaggtgagc gtcagcagag aaggtgaaca 120 ggatgagcag ttaggaaacc tctcgaagga gagaatgcat tttacataac aactaaattc 180 aatcagtctt caatctacca cgccgagcac aagcgaccaa ca 222 // ID MGR583 repbase; DNA; PLN; 5977 BP. XX AC AF018033; XX DT 11-AUG-1999 (Rel. 4.07, Created) DT 11-AUG-1999 (Rel. 4.07, Last updated, Version 1) XX DE MGR583 is a non-LTR retrotransposon MGL. XX KW Non-LTR Retrotransposon; Transposable Element; AF018033; LINE; KW MGR583; ORF1; ORF2; reverse transcriptase. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-5977 RA Meyn III A.M., Farrall L., Valent B., Chumley G.F. RA and Orbach J.M.; RT "Magnaporthe grisea repeated DNA element MGR583 is a member of RT the LINE-1 class of polyA retrotransposons."; RL Unpublished. XX RN [2] RP 1-5977 RA Meyn A.M., Farrall L., Valent B., Chumley G.F. and Orbach J.M.; RT "MGR583."; RL Direct Submission to Genbank (08-AUG-1997)Plant Pathology, RL University of Arizona, P.O. Box 210036, Tucson, AZ 85721-0036, RL USA. XX DR GenBank; AF018033; Positions 1 5977. XX SQ Sequence 5977 BP; 1389 A; 1801 C; 1743 G; 1044 T; 0 other; caagcatcct ccaccattca tgggtcagac ccacctttgt tagcgattca cacccaaaca 60 caccaataag cttaacagct gaagaatttt cgccctccgc gcggtcgtca tggcctcacc 120 agaggtctca aaccgccgcg cgcgcccgca gagcacgccg cacggtttgc cgcagggcca 180 ggccgagtcg ggacacgtat ctctcgacac gcgcaccgct aacgcgcctc agccggctgg 240 ccgcggaagg tactccaccg tcccggccct ggccatcaaa acactgcagc aggagttgga 300 aaacgtggaa acagtcggca gctggctcga agaggtcttt gcagccaagc tcgaaagttt 360 acaggccccg gaggacgccg cgcttaggag aattgttctt gaacttgacg acgtgatcag 420 cggctggttc ctcagtcgca ccctccctga aaaagagcgt tcgcgctccc cgtccggttc 480 gccgaccagt tccagcgaaa ggcgcagcat tttaattacg aggacgggca cggcgtcgtc 540 ggcctctaaa ggcagaggca cgcccactaa caaatcggtc acatgggccg agcgagccgc 600 cacgccacca gcggcggccc caacgcgaat tttaaccccg gccacgcgct cgtacccgat 660 acgtacgacg cccggcaatg cacctgacag ctccgcaact ccctcccaat cgggccggga 720 ccgctcccaa gccccgaaac gtttgacaga acagccgtcc aaccgcatcc tgatccgcgt 780 aaatgacaaa ttgcggatgg tgacgaggga gccatacgcg gtaacgacca aattggccga 840 attggtctcg gtgccacaca gtgaaatccc aaacgccaag cgtaccccca cgggctgggg 900 tgttacggtg gcctctgagg aaacacggca aaaactcctc aaccccagcg cggtcaaggc 960 cattatggac gcattggacg cgcgggaagt cactgtcccg acaacctggc acacatacgc 1020 cgtctctgga gtgccccgaa cgctcaattg cctggacgga agaaaggacg tacatgaggt 1080 aatccaggag gagattaccg tggcagcagg ccagcagcca gtcaactggc atatttccaa 1140 acatggttac gacccacata cggctgaggg cacgtggata gtgtccttcc ttcaacccgt 1200 aaagcccttt cagctttttg gagtgtcgaa acgtgcgcgg aaggttgaaa aatcacgcaa 1260 aattacacac caccacgacg gttgccaggg atattgcgaa atacgtcgct gcgtacggca 1320 agcgcgttgc ggcatatgtg gtgaagcaaa acatgcgaca gaggaagagc cgtgcaaggc 1380 agcccccaaa tgcgttaatt gccacggcca tttcccatcc ggacatgaga attgccctgc 1440 ccgacctttg gtggtaaatg ggaagcttga acgaccttca cagcgtaaac ttaaggggat 1500 tcgcagaatc ggacgtgcca accgtgccgc gattatcaac gaccgggccg aaacggcccg 1560 ccgagagcca gcacctgcaa tcccggtcct aagcacctca tcgcagcatt cgcaaacctc 1620 gagctcccga tcgagcattt caaacaaaag agcgcggcca tgcgaggcgg caggggcgga 1680 catccgtaac ttcctgcagg ttgaacagga acgcgtgcac gacgaaatcg tttgggcagc 1740 cgaaatggag gaggacgcag cggctgccga accttgcccc gctgatggga tagacttgga 1800 agcaacccgt cgattaatat gacgaaatac tcgctcggca atatgcagcg ggaatgcctc 1860 gacgtagttt gggccaacgt aggtaaaagg atgggtgtgc atctgagcct attggagttg 1920 tgccaccaga gaaaggtgga cctggttaac gttcaagagc catggtgcgg gctaaatacg 1980 actacacaaa cgcacccggg ctatgatgtt tttgcgccag tggacgaatg gcacgccaac 2040 acttacgaag ccatgactgg gctccggccc cgggtgctca cctacgttaa gaagggggca 2100 gccctaaggg ccgcacaacg acggctaccg cagggccaaa atacgcggga catactctgg 2160 ctcgaaatta acggaatatt gtttgttaac gtatataggg ctccgggcac tgaagccgcg 2220 ctggaaatgg tatgcaatac cgtgccaaat ggacccacgg tgctaggcgg cgattttaac 2280 gtagcggctg ctgcatacca gccgggccgc gcaaacgcac gcggagggga ccaactgacg 2340 gcatgggcgc aagcccaggg gatgagtttt acaggaaata tcggcgtgcc cacccaccgc 2400 gacgggggtt tactggatat ggtcttttcc aacctcccca gcacaataac tgtggttgac 2460 agcagtcttt acacaggctc cgaccacgaa tccctttata ccacgctgcg gacgcgcggc 2520 gccccccgcc cggaggcgat caacgtttcg gttagggacg accggttacc aaagttcgcg 2580 gagctacttg cttttggcat gcaagacatg ccggacccgg gatccgcggc cgatgcgtac 2640 gcattggacg cgtgggtagc tgaatttaca actttatggg agcaagtgac gtgggtcgtg 2700 ggtacgccgg cgggaaaaag ggacagctcg gctccctggt ggaccgaaaa ctgccagcgc 2760 gtctggtccg aattccagcg ggttaaacgg agcgctgtaa atagggcaga cgcctctgcc 2820 gaggaaaaag cctatacgaa aggggtgcgg gccgcgaagc gggagtactg gaggcaccgg 2880 atcgaccaac tgcgcgacga taaggatttg tggaacatgg tgggctggct gggagccgga 2940 ccacgcctcc ggtccccgcc gctggttatt aacggcgagc aagtgagcga gcctttagca 3000 aaagcggaag cactgcaacg ggaggtgctt ggccgatttt cggcggagga tgacctgcag 3060 ggagacccct tggaggcctg gtcgccggac gaggctaaaa tcccttggga cacccaggtt 3120 agtgcggaag aggcggagcg ctcctgcatt ggggttacga gcacgtcccc gggcatcgac 3180 ggaataaccg tccggctact aaaagccgga tgggcttcgt tggccgagcc ggtgcgcagg 3240 ctctaccaac gttgcctgga actcggacat ttcccagcgc cttggaagaa ggccgaagtc 3300 gcgatgctac cgaaaacggg gaagaaagac cggagcagcg ttcgatcctg gcggcctata 3360 gccctcctct cctgcatcgg aaaaggcctc gagaggctcg ttgcacgccg gatagcttgg 3420 gccatacacg acaacgggct ccttagctgc acccacggcg gtgccctacc caaacgatcg 3480 gcgacggatc tggtttgtgc cctcgcccac gatatcgagc aggctttagc tcgcggggag 3540 gaagttaccc ttgtcgcatg cgacgtccaa ggcgccttcg acgccctcct ccatgggcga 3600 ttaatacgga aaatgcggag cctcgggttt agtaaaatgc tcctcaggtt cgtgattaac 3660 tttttaagcg gccgccaggc ccgagtccgg ctggagggta cgaccacggg ctttaggcgg 3720 cttgggtgcg gcaccccgca agggtctccc ctttccccga tcctatatat gctatatttg 3780 gcgtatctcg tcaaaaacgg tacgaagtgg cggttggcat acgcagacga cgtgcttaca 3840 tggaaatcgt caccctcgtt ggaggaaaac gtacgttggc tggaagataa actccgggat 3900 atgcacgaaa ttgcggcgga agagaagatc cattttgcag cggaaaagac agaggtgatc 3960 catatcacta agaaaaggca cggtcgcaac ccggaaatcc ggattaatgg tagaacggtt 4020 accccggtcc aactaccggg cggtcgacgc ggacaaagcg cctccggggc cgagcgctac 4080 ccgggcatgc gttggcttgg tttttggttt agccgacggc tagacgggcg ccgccacgtg 4140 gccgaaaggg ctgccaaagc aatggcggtc gctgcccacc tcaagagctt tggggcagta 4200 agatacggac cgcctgcggc tgcacttcgc aaggcagcgg tggcatgcgt gggttcctcg 4260 gccacctacg cagccgaggc atggtacaac ccagcgcaca agcaaagagg actcctcaaa 4320 gcattgaaca aaccgctggt tttagcggca cgggcaatcc tcccggcgta taaaaccacc 4380 ccctcgtcca ctgttctcag ggacgcagga ctaccctcgg cccgcgtcgc gctggcctac 4440 acccgcctga aatacggcgc ccgactaagg ctcgcggaca aggggcaccc ccttgtcagc 4500 cgcctgcgtg aaacacctcg tgcccgcaac tcgggccatt cggccacgac cctgcaaacg 4560 gctgcacaac ttctcccgcg gatccggaga ctagagttgc gcgcacctcg caatgccccg 4620 gattctcgca ctgaccccac cggaggagtc ccgaaagagg aagcggcccg ccgctttatc 4680 gaatggctgg acatggtatc acctgacgat atcgtggtat atacggatgg ttcggaaaaa 4740 cacgaaaaca actgcgtcca aatagggtac ggatgggccg cttttagggc gggcctggaa 4800 tttgccgcac gtgccgcatc tattacgccg gaaagccacg ttttcgacgc cgaggcgatt 4860 ggcgccctaa aagggctaca ggcggcagcc aaggcccagc caggcgcccg gatctggatt 4920 tgtgtggaca gcacctcggt tatttggggt cttagaggcg acgcgccgcg ttcgtcccaa 4980 tgggcctttc tggagttcca taaccttgtc gatctactcc gaaaacaaag taccgaggtt 5040 cgggtccgtt ggtgccctgg gcaccaggga atcccgggaa acgaccgggc tgacgagctg 5100 gccaaggccg gctccgccgg accgccggac ccagacccga gggctcagca aaccacgtat 5160 agcggtgccg gcacggtcct cagagccatt ctttcgaata tagagaagga ctggtggcgt 5220 aaagaactct gtgaacggtc ccccgcatat agggaatgga aattccaata cacaccgaga 5280 aaggagcccg aggaactgcg tttgccaaga cccctactgg gccattattt ggccatgagg 5340 accggccacg gcgatttcaa agcctaccat gaccgtttca accaccagga tgcaaacacc 5400 tcgtgtgcct ggtgctggaa gcggacctcc cctgaacacc cggtgcactg ccgcttttcg 5460 cgggcggtgt ggagaaactg gccgtggcct gacaacgacc ggccggtcgg gccgccagac 5520 cgcgcccaac gccgcaaatt cttccagaca agcctcgggc aaccgaaaag ctttgaggcg 5580 ttttcgatag ccaccaacta cttcagcgcc cgccccagag cggcccgcca gcgccccgcg 5640 cgccacgaac gcactttacg cctagggaca ccgatcgtaa acgactcgaa ctctgacgag 5700 gaatagactt actgcctttt cacccacact tcacggcaca agccgctaga cgaaccctcc 5760 gtgcacctta ggcacggggt cgcgtcagtg aactaacccc ctaagcagga ccgggcccga 5820 acccggtcag gcacgatccg cctctgccct ccttgttttc cccctgtgta aataaagaag 5880 atagaacgcg cgccgagata cccctcggga ggttgctaac ggccggctaa caagccgggc 5940 cgagcccggc gttaactaat actactacta ctactac 5977 // ID Gypsy-8_ES-I repbase; DNA; PLN; 7335 BP. XX AC CABU01008853; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_ES_; KW Gypsy-8_ES-LTR; Gypsy-8_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-7335 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01008853; Positions 15206 7872. XX CC Positions [5401-5892] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS join(49..1962,1966..6786) FT /product="Gypsy-8_ES-I_1p" FT /translation="MGSKGGGKKKDGGSQQQQQQLKKQKPLMTKQQTKPRP FT DAAAPNHQGSAKPQEGQSTPSQAGDTAGAAASVAPSQTGNRGGYFQALVGG FT SRDDSDNNSSAGDGAEAVTTRHRDTDPNSDDNDDDSEEGAVGDDDVDDDLA FT HDILRNRASAASQQSGSLLASGGSLEAVLVGAVTKAVEAEKTPPAWVLNML FT MPGAVHQHDIQQVNPRSLASDLDAENRSGMRTTVSVQQTPAQNMNVSTPTN FT SSINPVHQNTVNQASPNQVNQQTVNQDTTTPVTQTTVNQEVISTARFTLKA FT NDLPPDLKLEGLPHEDVPEKMALYRAHIGLLSADNVSQRTIDHRAIKHLAL FT FVRGAAAQSLSLMLSSSLEWRPPAQLNALRARGEVIRITPPKTWKEWVTAF FT TTSFAPANRIALLARDVMTLEAKSSQSVDVFALRVSRAYARLLAEAERTAP FT LNVPPHEHAFNQALTASFENGVHPHIRVEMMRADPSDSFMESKARARRHES FT NKLRSPPAPISATASTVYGSARSGQLQTTAQDNRDRISALENYISGQEAFV FT SSGGAYSTQRGGRPQRGTDKRDRDNSKSRGPPARAKAKVSFAGTTKSDTDN FT TRKECDFIGCRFSSIRFTHTRAECKNEEAAKKEGYKVTKDGRPSRQRPSAN FT VGHQSFGSVKPVSTNWDRLQSSSKQKRAKVDERDSKHCKNGVRSLVGKKKK FT AIREQRCSKTVEVHVTREYSREGCSNKQTRGVPKSSTSTADAVASVAPALR FT DSTQVGQVAACLAPQALHVATVAGDFRSKHRSNLMRTDRNEEFQAFYMSAL FT AGYPVCPSVLRSTSKRVRVPARINNESVDEITIDTACDIPCISRKFMRSHK FT TLKNTEIFPVPPGAINLRSADGSPLKIAGYTRFELTLGEITLPVEALVLPS FT LGPDNMLLDNSIMGAFGGVLDWQAEELSFKTAATKIPAVHRKTRYPTTDQG FT NSLNCSVVAVERDTPVMPVYTTRKCSIPAQHEIAVEIHSLEAPDETTAAAV FT EPRIVTSDDVGKQDTPDAFRRVIVARTVCHWYQHNKSAMVQLANPSHRPVS FT LKRNTLIGYISPVKTVLPQTMSSVQSSPAETEKIRADLTKALAKAFRDTTF FT SPDQCEEMLKLCTKYRSVFSLSPKELGRCTLTEADFPLQPGTKPVNRAPYR FT ANPRMQEVIDKCVGEMEEAGIIEQRASPWGSAVTLVAKADGSPRFCVDYRA FT TINKNLIRKSWPMPEMASHIDTVAGAKYITVCDVQSAYHQIPIAEAEQDKT FT AFVTRDGKWVFKRLPFGIANAPFLFQRTMALTFAHFGPKSGLLVYMDDLIC FT CSSTWEGHISLLENTFQALQAAGLTLKPSKVQFGPKEVKYLGHVLSADGIR FT LGDDRIKSILELPTPTNIKSLRSVLGTVNYVRKFIPDLAAVTAPMVDLTKK FT DAVKSVAKRWGPKHDEAFAEVKRLLTNAPVLHFPDFSKEFVIHVDASEVGA FT GAFLAQQNGDDVNIIAYFSQRFNKSQQHYSATMKECYAVVLAIQHWRPYLW FT GRHFTCVTDHAALRYLYTMQDTSNMLTRWAIALQSFDFTVKHKPGKLHVVP FT DTLSRLFVFENEQERTAPNLAPICRNVPDDPKLQQHMPNRPYQVSIDKLDD FT VQPVLSDRELFTVNSNFVSAMKVFESVDHEKLREKQAEEYGEYVQYILDAK FT APLPDNETATSMSYYSIQDGLLFKSYLPGHLRKRSTFSDQLVVPHDLTGLV FT MHAYHDHALSGGHLAFRPTYEKIRQKYWWQSMNRDIRTWCLECQACQRRKT FT PHRRPKLPTGHVPVQRPFERVSVDLVEYKSLSTSAVGMRCKYVLSMMDHLT FT RYAILTPVPNKTAETVARVIIDRIISIFGPPEMLHSDQGTEFENKIIYQLQ FT TILGYKKTRTTPYRPQGNSVSERVHSTMHSMLAMHSSLDRDNWAELLPMVQ FT LAYNTSFNKTMHETPYFLMFGRQARLPVDVILGIPHVGSTADTESFAQNTR FT ENLQIAFELARRNLTERAEKQAAKNEKLPQYPVFKPGQQVLVYRPHQDSDG FT PNPKLFLPWRGPYVICSQLSPVVYRVQRVNETREISVHLAHLKQYHEKEKP FT PAPQFEKLAEYFLGKQIPLPALTANDENQPKIERYVVLKVVGHRSGQGRRG FT PHNYRYRLRLKGYGPESDLMYRADEVPQCHEMISAYRSKHDLDIAPAKKSS FT EAPQKIAKRKRDEGRDPSTNKRARHKAKPTKACTKPTKCVNKESAQRKSKR FT SPKANKRYISKVSKR" XX SQ Sequence 7335 BP; 2193 A; 1845 C; 1741 G; 1556 T; 0 other; tattggcgtt cgacgaagcg ttctatcttt acaacccacg tgtgaaacat gggctccaaa 60 ggaggaggaa agaaaaagga cggagggtcg caacaacagc agcaacagct aaaaaagcaa 120 aagccgctga tgaccaaaca gcagacgaag ccgcgccccg acgctgctgc gcctaaccac 180 caaggctcgg ctaagcccca agagggacag tcgacgccat cccaagctgg ggacaccgct 240 ggtgcggctg cgagcgtagc accctcgcag accggtaacc gtggcgggta cttccaagct 300 ttggtgggtg gaagtcgtga cgacagcgac aacaacagca gcgctggcga tggcgccgaa 360 gctgtcacca cccgacaccg cgacaccgac ccgaactccg acgacaatga tgacgacagc 420 gaagaaggcg ccgttggcga cgacgacgtt gacgacgacc tcgcgcacga catcctgcgg 480 aaccgcgcaa gcgccgcaag ccagcagagc ggttcgctcc tggcaagcgg cgggtcgctg 540 gaagccgttc tcgttggagc ggtcacgaag gccgtggaag cggaaaagac cccaccggca 600 tgggttctca acatgctcat gccaggagcc gtccaccagc atgatatcca gcaggtgaat 660 ccgcgttcgc ttgcctccga tctagatgca gaaaatcgtt ctggtatgcg cacgacagta 720 agtgttcaac agacccctgc tcagaatatg aatgtgtcta caccgacaaa ttcatctatt 780 aacccggtac accaaaacac ggtaaaccag gcctcaccga accaggtaaa ccagcagacg 840 gtaaaccagg acaccactac cccggtaacc caaaccacgg tcaaccagga agtgattagc 900 acggcacggt tcactttgaa agccaatgac ctacctcctg atctcaagct cgagggtctg 960 cctcatgaag atgttccgga aaaaatggca ctttacaggg cacacatcgg tctattgtca 1020 gccgacaacg tctctcaacg tacaatcgat caccgcgcaa tcaaacatct cgcgctattc 1080 gtgcgaggtg cagcagctca aagcctcagc ctcatgctta gctcatctct cgaatggcga 1140 ccgccagctc agctaaatgc gttgcgtgca cgtggagaag tgatccgcat cacacctccg 1200 aaaacatgga aggagtgggt cacggctttc accacatcgt tcgctcccgc caaccgaatt 1260 gctcttcttg cgcgtgatgt catgacatta gaagcaaaaa gtagccaatc agttgacgtg 1320 ttcgcgctcc gagtatcacg cgcgtatgcc agacttctag ccgaagccga acgcacagct 1380 ccgctgaatg taccacctca tgaacacgca ttcaaccaag ctctcaccgc ctcttttgag 1440 aacggtgtac atccacacat ccgcgtagag atgatgcggg cagatccatc cgattctttc 1500 atggaatcta aagcgcgtgc tcgtcgacac gagtccaaca aactgcgctc tccccctgcc 1560 cccatctcgg ctaccgcttc caccgtgtac ggttcggctc gttccgggca gctccaaacg 1620 actgcgcagg ataatcgcga ccgtatttct gctctggaaa attatatttc cgggcaggag 1680 gcatttgtgt ccagtggtgg agcgtacagc acgcaacgcg gtgggcgtcc tcagcggggg 1740 accgacaaac gggatcgaga caactccaaa tcccggggcc cccctgcgag ggcgaaagcg 1800 aaagtatcgt ttgctgggac taccaagtcc gacactgaca acactcgcaa agagtgtgac 1860 tttattggct gccgattcag tagcattcgc ttcacgcaca cccgtgccga gtgtaaaaat 1920 gaagaagcag cgaaaaaaga ggggtacaaa gttaccaaag actagggtcg cccgagtagg 1980 cagcgtcctt cggccaacgt gggacaccaa tcatttggtt ctgtcaaacc agtaagtaca 2040 aactgggata gactgcaaag ttcgagcaag cagaagagag ccaaagtaga tgagagggat 2100 tcaaaacact gtaaaaatgg tgtacgatct ctggtgggaa aaaagaagaa agcaatcaga 2160 gagcaacgct gtagcaagac agttgaagta catgtaacac gagaatattc tcgcgaaggt 2220 tgtagcaaca agcagacgcg aggggttccg aagtcaagta ccagcacagc tgatgcagta 2280 gcctctgtag ctccagcact aagggatagc acccaagtag ggcaagtagc cgcctgttta 2340 gcgccgcaag ccttgcacgt agctaccgta gctggggact tcaggtcgaa acataggtcc 2400 aacctaatga gaactgaccg taatgaagaa tttcaagctt tttacatgtc ggcactcgct 2460 ggatatcccg tgtgtccatc ggtattgcga tcgacatcca agcgagtacg cgtacccgcc 2520 agaataaata atgaatcggt tgatgaaata acaatcgaca cggcgtgtga cataccatgc 2580 atatcacgga agttcatgag aagtcacaaa acgttaaaaa acacggaaat atttccggta 2640 ccccctggag caatcaatct gcgaagcgct gatggttcgc ccctaaaaat tgcagggtac 2700 actcgatttg aactgacact aggcgaaatc acattacctg ttgaagctct agtgctgccg 2760 tcgttgggac cagataatat gctactcgac aatagcataa tgggcgcatt tggtggtgtt 2820 cttgactggc aagcggaaga actgtcgttt aaaacagcag caaccaaaat tccagctgtc 2880 caccgcaaaa cgcgctatcc cacgactgat cagggaaaca gtttgaactg ttctgtggta 2940 gcagtagaga gggacacgcc tgtgatgcct gtatacacta cacggaaatg cagcatacct 3000 gcacaacatg agatagctgt tgaaattcat tcgcttgagg caccagatga aaccacagct 3060 gccgcagttg aaccgcgcat cgttacgtcc gatgacgtgg gcaagcagga tacaccagat 3120 gcattccgca gagtgatagt ggcacgcacg gtctgtcact ggtatcagca caacaaaagt 3180 gcaatggtcc aactggccaa cccttctcac agaccggtat ccttaaagag gaatacgctc 3240 ataggctata tttctccagt gaaaacagta ctgccgcaaa caatgagcag cgttcaatcg 3300 agtcctgcag aaacggaaaa aattcgtgca gatctcacaa aagcattagc caaagctttc 3360 cgagatacaa ctttttcgcc cgaccagtgt gaagaaatgc ttaaactgtg taccaaatac 3420 cgttcagtgt tctccctgag tcctaaagaa ctgggcagat gtactcttac agaggctgat 3480 tttccattac aaccggggac aaaaccagtc aaccgagctc catatcgtgc taatccacga 3540 atgcaagagg tcattgacaa atgtgttggt gaaatggaag aagccgggat aatcgaacaa 3600 agagcgagcc catgggggtc agcagtaacg ttggtagcaa aagctgacgg cagtccccga 3660 ttctgtgtag actacagagc gacgatcaac aagaatttaa ttcgtaaatc gtggccaatg 3720 cctgaaatgg caagtcatat cgacaccgta gcaggtgcta aatacatcac agtctgcgat 3780 gtacaaagtg cataccacca aataccaatt gccgaagcag aacaagacaa gactgcattc 3840 gttactcggg atggaaaatg ggttttcaaa cgactcccct ttggcatcgc caatgcgcct 3900 tttctgtttc aacgtacgat ggcattgact ttcgcacatt ttggtccaaa gtctggtctt 3960 cttgtgtaca tggatgatct tatttgttgt tcatctacat gggagggtca tatctctctt 4020 ttggaaaata ccttccaagc gctacaagcc gcaggtctta cattaaaacc atcaaaggta 4080 caatttgggc caaaggaagt gaagtatttg gggcatgttc tttccgcaga tggcatacga 4140 ttaggtgacg atcgaataaa atcgatacta gagttgccaa cgccaacgaa catcaaaagt 4200 ttgcgatcag tcttaggaac ggtcaactat gtcaggaaat tcatcccaga cttagccgcc 4260 gttaccgcac caatggttga ccttacgaag aaagacgcag tgaagtcggt agcgaaacgc 4320 tggggtccga aacatgatga agcatttgct gaagtgaaac gattactcac caacgcccct 4380 gttttgcatt ttccggactt ttctaaggag tttgttatcc atgtcgacgc atctgaagtg 4440 ggagcagggg cattcctggc acaacagaat ggcgatgacg tgaatatcat agcatacttt 4500 agccagcgat tcaacaaaag ccaacaacac tactctgcca ccatgaaaga atgctacgct 4560 gttgttctag caattcaaca ctggcgtcct tatttatggg gtagacattt tacgtgcgtg 4620 actgatcatg cggcattgcg atatctttac acgatgcaag acacgtcaaa tatgctcacc 4680 agatgggcaa tagcactgca atccttcgat ttcacggtaa aacataaacc gggaaagttg 4740 catgtagtgc cggatacgtt atcgcgactt ttcgtgtttg aaaatgaaca agaacgaact 4800 gcgccgaatc ttgcaccgat ttgccgaaat gtaccggacg acccaaagct gcaacaacac 4860 atgccaaaca gaccatacca agtctcgatt gacaaattgg acgatgtgca accagtcctt 4920 agtgataggg aactgttcac agtcaattca aatttcgtca gcgccatgaa agtatttgaa 4980 tctgttgatc atgagaaatt gcgcgagaaa caagccgaag aatacggcga atatgtccaa 5040 tacattttag acgccaaagc accgctaccg gacaacgaaa cggcaacatc aatgtcgtac 5100 tattccatac aagacggttt actgtttaaa tcgtatctgc caggacacct acgaaaacga 5160 agcactttta gtgatcaact tgtagtccca catgacctca caggtttagt gatgcacgca 5220 taccatgatc acgctctttc gggtggacat cttgcatttc gtccaacgta cgaaaaaata 5280 cgacaaaaat attggtggca gtcaatgaac cgtgacatac ggacttggtg cctagaatgc 5340 caggcctgtc aacggagaaa gacaccccac cgccgtccga aactgccgac aggtcatgta 5400 cctgtacagc ggccatttga aagagtatca gtcgacctag tcgagtacaa atcgctctca 5460 acatcagcag tcggaatgag atgtaaatac gtgctttcca tgatggatca cttaacgcgt 5520 tatgcaattc tcacaccagt tccgaacaaa actgctgaaa ccgtagcacg tgtaatcatt 5580 gatcggatta tcagtatttt tggcccgccg gaaatgctac attctgatca agggactgaa 5640 tttgaaaaca agatcatcta tcagttgcaa acaatcttgg gctacaagaa aacacgcacg 5700 acgccgtatc gtccgcaagg taattcggtc tctgagcgtg tgcattcaac gatgcattcc 5760 atgctcgcaa tgcatagttc attggatcgt gacaactggg cggaactctt gccaatggtt 5820 caactagcgt acaatacgtc gtttaataaa accatgcatg agacaccgta cttcttgatg 5880 tttggtcgcc aagcacggtt accggtagat gtaattctcg gaatcccaca tgtaggttca 5940 actgcagata ccgagagttt tgctcaaaac acacgagaaa atctacaaat tgctttcgaa 6000 ctagcgcgaa gaaacctaac ggaacgtgca gagaagcaag ctgcaaaaaa cgaaaagtta 6060 ccgcagtacc ccgtctttaa acctggtcaa caagtactag tataccgacc acaccaggat 6120 tcagatgggc caaatccgaa gctgttctta ccgtggcgag gaccgtatgt catctgttca 6180 caactgtcac cggttgtgta tagggtgcag cgagtaaatg aaacacgaga aatatccgtg 6240 caccttgccc atctaaaaca gtaccatgaa aaggaaaaac caccagcacc acagtttgaa 6300 aaactggctg aatatttcct tgggaaacaa attcccttac ctgccctgac agcaaacgac 6360 gaaaatcaac cgaaaattga aagatacgtc gtactgaaag tggtagggca tcgaagtggt 6420 caaggccgaa gaggtccgca caactatcga tatcgtctaa gactgaaagg atacggtcct 6480 gaatcagatc tgatgtatcg tgccgacgaa gtgccgcaat gccacgaaat gatttccgca 6540 taccgatcaa aacatgatct ggacatcgcg cccgccaaga aatcgtctga agcgccgcag 6600 aaaatagcga agcgcaaacg tgacgaaggt agggatccga gtacaaacaa acgcgcaagg 6660 cacaaagcaa agccaaccaa ggcatgtact aagccaacaa aatgcgtgaa caaggaaagt 6720 gctcagcgga aaagtaaacg aagtccgaag gcaaacaaaa gatacatttc caaagtgtct 6780 aaacggtgaa aggaatagca tccaaacaat aaggttgcta tccagcattt gattgggtca 6840 aatgctggcg aggaaatgtc aagttaaccg gtctctagtg aaattgaggg tcgcaactcg 6900 atgacactac gtgagtcacg gaaacagtct ttagactgtc gaacaccgta tgcctatcgt 6960 actcaagaag caaaacgatt gcttacaccc agcggtatgg ttacgcgaac cagaacccgc 7020 acaaagtaca aattcttgat gcttaacaag aataaacttt gacatatcat cattgattga 7080 catcaataac tggtagcttg tacgagcctt ggagagatta aatccgtacg gtgttgcttt 7140 caacacgtgt gttttccaca cggcactgtc agctgtcttc ggatagtgag ggagagattt 7200 aattttcgaa aagctgtatc tggatccaat gatacgtcca tacctgctcc actacaatta 7260 acatgcaaac atgcatgcgc gccaaaaccc aacttcaaca agctgagctt tcggcgaaga 7320 aaaagggggg ctatg 7335 // ID Gypsy-53_PIT-LTR repbase; DNA; PLN; 415 BP. XX AC AATU01004845; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-53_PIT_; KW Gypsy-53_PIT-I; Gypsy-53_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-415 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004845; Positions 51140 51554. XX SQ Sequence 415 BP; 112 A; 127 C; 115 G; 61 T; 0 other; tgcagcacct gtaccagatg acacagcggc aaaagcaagt cacaagtcac cgcgtcacaa 60 gtcacacctg tcaccccgtc ccaacagcga catccatccc agccgcccct gcagcgcaag 120 tcccagtctc caatcgacag cggcgggaag gaacgtgagc ctcgagctgg tctcgtgcta 180 gcgcgcgtgc tctcggccca cgcggccaag caacagccga gcaacaagac agcagaggcc 240 gagaggcacg cgccgacagg acaacaatgg acagaggcac gtgctgaaag ggaagaggca 300 gcgactcaag ggcgtcgagt ttggcgaggg gtgttgtagt gatagcgatg caaatggacc 360 gaccgactaa ctctgaataa aacttcacaa tttacctttt tgagctcact tgcca 415 // ID Copia-50_PIT-LTR repbase; DNA; PLN; 230 BP. XX AC AATU01008506; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-50_PIT_; KW Copia-50_PIT-I; Copia-50_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-230 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01008506; Positions 2006 1777. XX SQ Sequence 230 BP; 64 A; 61 C; 53 G; 52 T; 0 other; tgttggaagt agtggcttgc gtcacgtgag atcgatcacg taacgccagc aaatacctgt 60 cgacagcaac caacgctgag acctaacaga aacggatgca caagcagtta gctagggtaa 120 ccacgtagct agcgacaacc tttattcatt ctcaattcta cttagtgcga ggcactacta 180 cattacgttg cggcgcggcg cgttacctga ggatcaaatc tacccttcca 230 // ID TE-3_PPa repbase; DNA; PLN; 444 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous transposon - consensus. XX KW Transposable Element; Nonautonomous; TE-3_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-444 RA Bao W. and Jurka J.; RT "Non-autonomous transposons from moss."; RL Repbase Reports 10(7), 1046-1046 (2010). XX DR [1] (Consensus) XX CC TSD and TIR are not clear. The 5'- and 3'- ends sequeces are CC similar to those of TE-2_PPa. XX SQ Sequence 444 BP; 157 A; 75 C; 81 G; 131 T; 0 other; agaacattgt ctgtctgtga tggcaaagct aatctatata agtaatagat tataacataa 60 tacaatctaa tctgttataa ttataatcta gttgggtgta catagtatcc tcctacctag 120 cttcatcaca tgagtacacc cagctaaata tgttattgat ggtatgaaca cgtaacatat 180 attgtatacg taatattgta atacataatg gtaatatgta atataacata acataacgta 240 ggatgaccct aattaacagg tcatcctaga caagaacatt gttgtttgtc tatcctagac 300 aagacaaaat atggatggaa ttatgtggag tgtctgaggt gctcccgagg atgacccagg 360 gggacatcct agaccctaaa aaagtaaaac aaaattttaa ttacttatac cagcttgggt 420 gtaccagggg tacacaggcc atac 444 // ID P-1_AurAno repbase; DNA; PLN; 5272 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW P; DNA transposon; Transposable Element; P-1_AurAno. XX OS Aureococcus anophagefferens OC Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 5272 BP; 901 A; 1782 C; 1778 G; 811 T; 0 other; caaggggatc ttcaagtatc tggggaggcg accatgctgc cccgaggcga ggcgacggct 60 atccgcggga ccagtgatgc ccgcttgaaa agaggccctc gggagcggcg gcccccggcg 120 cgcgtggggc cgccgcgttc gtgtcgcgcg gcgcccatgg gtacgtcgac ggcgtctgcg 180 catcagaggc aaccttcgtg cgtttccggc tccgcgcgcc tcgtcgcgag attttcaata 240 tcgttcgccg ggctggtcgc cagcggcaaa gtgtcgggga tcgttgactt ttcgcgcgtc 300 cgagctcgcc cacgacctgc ccgagcctcc ggggcgaaaa tgtcaacgat ccccgacgat 360 cacgcgttgg cccgcgcagg tccctcgggc acggactacg cgcacgcact gcacaaggcc 420 atggccgcgc tgaagatccg cgacttcatg acgctcgcgg actgggccac gcgcctcacg 480 ggcaagggca tcaactgctc cgcggacgac atcgcgaaga cgattttgaa gcacgcggtg 540 ctcaagatga gcgtgggcct ccaggagaac atcttcggca tctacgtcga gacggtcagg 600 gagaagcgct acctccaggt cttgtcgatc ggccagcccc gcgacaattc gaactggccg 660 ccgagcgccc cgcccgggcc cggcaggaag ccgtccgcgg ccgtcatcaa ggccgccaac 720 gcctggctcg agccgcagcg ccgacagaag ctcggctcgt ccgcgaagcg catggcgagg 780 cacaaggtgc cggagtcgac gccgccgtcg acggacatgg cgccgccgcc gtccgaggcg 840 ggcgcgggcg actcgtcgtc ggggccgcag tcgatggaca tcgagcccgc gccgacgtct 900 tcgtcgctgc cgccctgggt ctcggacatg gtcacgggcg agttcgtgaa gcgcctcacg 960 gccaagggca tcgcgatctt caaccgcttc ggcgacgacg acgagtccgt cgtcgtcgta 1020 gtacgcgcag cgcccgcgac cacgctcgag gtctccgtga cggcgacggt cttgggcttc 1080 gactacaact gcgccgagga gaagcaggcc gacgcgccga cgccgacgcc catggacaag 1140 ctccagctcg tcggcttgct cctgaagctg agccggcggc tctgcgtggg cgtcggcgag 1200 ctcgacgttc ccgagaaggc gaggggcgag ttctccaagg caataacgaa agcagcgcgg 1260 cgagctacag atgacactgt cgcggcggcg tcgggctcaa ttgttatcgg gcggcgaccg 1320 gcgcgcggcg gcgtcaagga cggcgcctac ttggtccggc tccgcggcgc cgtcgaggcc 1380 gcgggcgagg gagcgcgctt cctctgcccc ggctgcgagc tcgtggacgt gaaccaggcg 1440 tggaaccgcc gggggcagtc gatcatcatc tgcccgacgt gcctggcctc cgtcgactcg 1500 ttccgccgct cggcgacgca ggcggccgcg gcgccgagcc aggcgccgaa ggggcgccac 1560 gacctcatcg cgtcccaggg gcccgcagtc atcacgtccg tgctgaaggc gaagcagtcg 1620 cggatcaagg tcgccaactg gcggaaccag cggctcgcga agagcaaggc gcgtctccag 1680 aacgcggagt acggcgagcg cttcgggagc atcttggagg ccctgcagaa gagcgacggc 1740 tgggagacgt gctttccgac ggggtccgtg aagcggatca tctgggacga ccagatgcag 1800 aactggaaga agaaggccga gggcaaatcg tcgcgggcct tccgctacca ccccgtgacc 1860 atcaagtggg ccttgcggcg cctcatcaag gacggggaga cgtcctacaa cgagacccgc 1920 gacgtctggt ccggcgcccg cgagttctcg ccctccctga ggcagcccga ctcgacgatg 1980 agcatcgtct ccgtaggtca tggccatccc ctgcgcgcgc tacctacggg agttcaagaa 2040 cgccttcagc gacaaggagg gcatccaggt cgacgtcctc aaggcgacga aggcgcactg 2100 cgaccgcaac gggctctccg agggggaccg gctgaccgtg atgtcgcacg acgggctcaa 2160 ggtccaggag ggcatcgtct ccaacgtctt cacgggggag atcgtcggct acgtgagcga 2220 ggagctcgac acctacgacc acatcgccct ccagctcgag gccctcgagg ccgacgaggc 2280 cacggacgcg ggcgcgacgg ccgcggcgga cgcccggaag gcgacgatgc ccaaggcggc 2340 gcagtactgg acggagttct tcgccacctc cgtcacctgc ggcgatttcc agttctcctt 2400 ctaccgcgtg gcgtcgacgg acctcaaggc ggcggacatc gcgcccatgg tgacgcaggc 2460 actgacggcg ctgcacgcgt acggcttcac ggtcgtcgcc gatttctgcg acaaggcctc 2520 ggagcacatg gcctacatcg ccgcctgcgc gacggtcacc gtcgccgacg tcaaggagat 2580 gcaggacggc gagaactggc aggccttcta cgacgacgtg gacgtgggcc acgaccagcc 2640 cgtcgcgatc ctccacccgg tcacggacga gcccgtcttc atcgtcacgg acccgccgca 2700 cctcatcaag acgctctaca acgcgctgag caagtccggc acggacgccg acggcatacg 2760 cgctacgcga tacctcaaaa agttcaactc caactacaac acggaggata ctttgggtct 2820 gaaagtgctc tacgacgtct ggaaaaggcg caacgagggc ggccccgcgc tgggcgtcac 2880 gggggacaag ctcgacaagg accatttctt tccgacggct cattctcgga tgcgcgtcgc 2940 gccggcggca cgcgtgctgt cggggacgat ggcgcggtac ctcaaggagg acacgcacca 3000 gtgcaagaac gacgggctca tcgactactg caaccttaac aacgagttct tcgacgtgat 3060 gaacgggaag agcggcgtga tccaggggcc cgacgacaaa aagttggcct tcctcgagcg 3120 ctacgtgcgg ttctacgagg actggaacac ggagaaccat gaccgcggcg ccggcgcgga 3180 cgccttcatc cccgcgcaga cgttccgggg cgtccagacc atccggggct tcatctgggc 3240 cgcgaagtac tacctggcga agtaccccgg caaggtcttc ctccccggcc gctgctcgca 3300 ggacgtgtgt gagcaccact tcaggaacgt caggggcgcc tcgggcgaca agaagaaccc 3360 atcgatccag gattgtcgcc gcgccgcgcg caccgcgacc gtgatccgcc tctaccgcga 3420 caagaaatcc aactcgggcg gcgcgcccgt cgacctccgc gcggtgctcc taaagcgcga 3480 cgacgcggcg cggaagaagc gcccccggcg cccccgggcc gaacccgcgg cccccagcga 3540 cgcgccgcac gcccccgccg ccgaggccgt cgaggacgac gacgacgcgg ccctcgaggc 3600 catcatggac gccttcgaga agacccagtg cgacgaagac ccggcgacct acgatcgtta 3660 cgcggacgac gccgaggtta gcgcgtaatt tggcggtggt ttgcagatct taagctccct 3720 tagatctgcg actcgatgcc gcattcgccg acgtgactgc gagagccgtc cggagcggcg 3780 ccttcccggc ggtagcgtcg aggcggcgat gctcttcgtg ggctcggttc aggctgagcg 3840 ccgtgtcctt gcggcggacc ttgtcatagg cgtcgagcat ggtcttatag acgaccatgg 3900 gaaacgcgtc ctggttgtcg ggcctaagga gcgggaggac ctcgctcgcg aaggcctcgt 3960 agatcttcgg gtcctgggcg atgacgacgc cgatgcggcg caggaggccg gagccgtagg 4020 cgtcgaagtg gtccgtcgac atgttgtgga ggtagatcgt ttcgagcttg cacacgtagt 4080 cgtagatggg gcgcgccgcg tagcacaacg agcccatgtc cttgtgcttg accttgccga 4140 gcggcatctt ctgctggctc gcctccgcct cgcccaggtt catgcggttc gtgaagtcct 4200 cggcccacgc ggatatcgac tcgccgctgc ggtcgacgaa cgtcttcatg accttcgaca 4260 ccaggaaccc cgcgatgtag tacaatgatt ccttctgggc cgtcgagaag gtcgtcgagg 4320 tcgtcggcat ctcgaggggc ggcgccttcc tcggcttcag ctccgcgcgg taggcctcgt 4380 agagcaaccc ctcgaggacg acggccaccg tcgggtcgag ccagagcgcg ccgacctcgt 4440 cgaccagcgc gcggcggaag cggcgcatcc gcttctcccg ggcgacgtag aaggccaagg 4500 ccgcgtcgtt tccggagccc gcggcccacg cgacggacga ctcgtacgcc cagctccgga 4560 gcagctccaa acacagcttc cgggtcgacg cgttgtcctt caggtccatg aactccttgc 4620 ggaacgaggg gcgcgcgtcg aggaggtcgc tgttccgcga gaaggcgtcg tccatgatct 4680 tctccccgtc gccgatgacg tccacgacgg ccttttcgta gcgctgccgc tgcaactcgt 4740 cgcgcttccc gacgccccgg cccgtgatct gcatctcgta tctgttgaac tggtgcttca 4800 gctgcgccga ggagatgccg atcttcgtgc actcctcgac gatgtcccgc gcagtccgat 4860 ggtttgaggg gaagacgccg ctccaggtct cgtacttcgc ccggatgaag gcgatggctt 4920 cctcggcctg gtccttcgag atcctcgccg tcgcgtctct tccggcggcc gcagccgccg 4980 gcggggcggc cggcggcgcc gtggccgctg gggcagcggg catcgctggc ggcaaggcga 5040 acccgggctg cggcgcatag cccatgggaa atggcgcagg cggcggcgcc cattgctgct 5100 ggtgcggcgg cggcggcgcc caaggcggca tgtagtgcgg cgcgtagggc gcccatgggt 5160 tccccggatg gcccacgggc ggcggcggcg tcgccatgcg ctcaaaccgg ataatagtcg 5220 cctcgcctcg gggcagcatg gtcgcctccc cagatacttg aagatcccct tg 5272 // ID Copia-3_PPa-LTR repbase; DNA; PLN; 272 BP. XX AC . XX DT 21-DEC-2009 (Rel. 15.04, Created) DT 21-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PPa-I; KW Copia-3_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-272 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 570-570 (2010). XX DR [1] (Consensus) XX SQ Sequence 272 BP; 68 A; 57 C; 44 G; 103 T; 0 other; tgttgagatc attaaatgta gccggcgctc tccataatat ttactgtaga ctacagtaat 60 taccatagct acagtattta gagtctagtg gagaagtact gtttatcctc tcctcttttc 120 tcttcttgta tacgagacac aaccagatca atagattttt gtgtgtgaag ctctctctcc 180 ttagaaaccc tcttgtgtgt atgacttact actactcttg tgtgtgtgta tgacttacta 240 ttactcttgt gtctttctaa acattctcaa ca 272 // ID Copia-9_PSo-I repbase; DNA; PLN; 4475 BP. XX AC AAQY01000747; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PSo_; KW Copia-9_PSo-LTR; Copia-9_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4475 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000747; Positions 56137 51663. XX CC Positions [1430-1972] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1331..3289 FT /product="Copia-9_PSo-I_2p" FT /translation="MMLVSRAAEGVPSFGQDDDVPVDVPCAGCSCGKMTVS FT PFARQSGSSVKTAGLLDLVHSDVMGPMKPQSKGGARFVVTFVDDYSRYVHM FT YLIKAKSEVFARLVEYKALVEAQTGRRIRCLRSDNGGESVNKKFGDFFAAH FT GIVHQTSTLHTPQQNGLAERMNRTLVEMARSMLYHRGMAREWWGEALSTAV FT YLTNRVPNTARPQTTPHEVFAGHKPDLSYLRVFGPRGYVHVDKSRRSKWDA FT RAHACIFLEYAPGSKAYRVWDAKDERIVTTRTITLNERPADNYRTVVHVTR FT QAPLQFDEDVSTSQQPQQPVLPATDNSGDVEMTEVDGDPVDMEVDAVPDAL FT VRRGEGEMSRRGGEALEIPVSEPSSNVTAARQLTSQSSLRQSALIPSSMRT FT GETSLSDRLVFGPTRPRQVRISAPHQPRLLTSAQEARTPSLPALPPSEGNR FT ETGEAERLLLENGETDPTSGQDATGDGYTSDGSIGEPDSKRPRIDDEYEIA FT LAASERIPNSFREAMRSADSDKWKEACRAEIRAHVRNHTWDLVYRPPGVRV FT IGHKWVFALKRDEHGNIIRYKARLVALGCFQTYGVDYTSTYSPVASLNTVR FT IFLAVCCQLGYMVNQYDVETAFLNGDLEEELYMVPPECLNVCEGMCVAFVA FT VSMA" XX SQ Sequence 4475 BP; 1004 A; 1117 C; 1371 G; 983 T; 0 other; agtcgttttt ggttatgagc ccaaatacgc tgggtcctaa cgacgtgctg cgcgaggaca 60 actatttcct gtgggaattc aactgccgca tggcactcgc gaggaaggac ctgctggacc 120 acgtggagat gaagccagaa gatgcaggta agtgggagac cgagacgtgg aaagccgccg 180 atttcaaggc gctggctgtc atctcgaagt tactgagtcc agtgtaccag ccgatgatcc 240 gagaatccaa gtctgccaag gatgcgtggg aaacgctgcg cgagttcttc gtcaggcaga 300 atcttcacaa ccgcgtccag cttcggaagc aactgcacga gttccaaatg gcatctgggg 360 ctgatttgat gggccaccta ctgaagttcg atgatctctg tctgcgactt tcggctgttg 420 gtgaccagct gagcgacgac gagaagctcg tgattcttct ggggagtttg tcgagctagt 480 atgacgccat ggtgaagatt attgaggctc actcatccgt gactctgatg gatgcgaagg 540 agatgctgcg ccgcgagtcg gagacgctca agaaacgcga gaagcaagag gaagcgttta 600 acgtgtctgc gcgtggtgga aatggaagca caagacgacg gaacaatgca gggtcacgcg 660 ggacccaggc aagccagcat ggacatggag gcgggcggca tggaagccgt cgtggtggtg 720 gccagcagcg ccaaccacgt ggaggtcgtg gagcgtcgag gtttgatggg cgatgctttg 780 aatgtaacca gttcggccac aagcgtgcag agtgcccaac actcagtaag aaggacgacg 840 gagatgagtt tgtgttcgcc gcgacgaggg aggcatcgat ggcatggctg ctggatagtg 900 gggccagcac gcacatgacg cacagccggc aagatttcgt ggagttccga tagctgcaga 960 gcccgacgga tattgtagta gccagcggac aacgcctacg cgcgatggga gtgggaactg 1020 tgcgcttcct gattggcggc ggccggttga tcaaggtgac tgaagtactg tatgttccgg 1080 acctcgaccg gagactgctg tcgattccgt cgttggtggc caagggtgct tctgtggagt 1140 tctctggtaa tgggtgcact atcagttttg aagggagatt ggttgcgcgt gtggagaagg 1200 gggaaaatta tttgtctgga acgtggtggc gacgacggat gaggagcgcg gcaaggacgt 1260 tgcagcatcg gcggagctgt cgcctggcag cttgtggcac gagcggctgg ggcatgtgtc 1320 gaagaagaag atgatgttgg tgtcgcgcgc tgcggagggc gttccgagct ttggtcaaga 1380 tgatgatgtc ccagttgacg taccctgtgc tggctgttcg tgtggcaaga tgactgtgag 1440 cccgttcgca agacagtccg gcagtagtgt gaagaccgca ggattgctgg acctcgtaca 1500 ctccgacgtc atgggtccaa tgaagcctca gtcgaaaggg ggagcgcgtt tcgtagtgac 1560 gtttgtcgat gattattctc gctacgtgca catgtatctg atcaaggcga agtcggaggt 1620 atttgctcgg ttggtggagt acaaggcgct cgtggaagcg cagaccggtc gtcgtattcg 1680 ctgcttgcgc agtgataacg gaggagagtc tgtgaacaag aagtttgggg actttttcgc 1740 ggctcatggg atcgtgcacc agacctccac gcttcacact ccgcagcaaa acggtctcgc 1800 tgagcgtatg aaccgcacgc tggttgagat ggcacgctca atgttgtacc accgcggaat 1860 ggctcgtgag tggtggggtg aagctctgag tacggctgtg tatttgacga accgcgtacc 1920 gaacactgct cgccctcaaa ctactcccca tgaagttttc gccggacaca agcctgacct 1980 gagctacctg cgagtcttcg gaccgagagg gtacgttcac gttgacaagt cacgtcggag 2040 caagtgggat gcccgagctc acgcatgcat ctttctcgag tacgctcctg gctcgaaggc 2100 ctatcgcgtt tgggatgcta aagatgagcg catcgtgact accaggacca tcaccttgaa 2160 tgagcgtcct gctgacaact atcgcactgt ggttcacgtg acgaggcagg ctccgttgca 2220 gttcgacgag gatgtgagta cctcgcagca gccacaacaa ccggttttgc ctgcgacgga 2280 caacagcgga gacgttgaaa tgaccgaggt cgatggtgat cccgtcgaca tggaagtcga 2340 tgcagtacca gacgcactgg ttcgccgtgg cgaaggtgag atgtctcgca gagggggaga 2400 agcacttgaa atcccagttt cagagccgag ctcgaacgtt acagctgctc gacaactcac 2460 cagccagtcc tctctacgtc aatcagctct gattccatcg tccatgcgca ctggtgaaac 2520 ctcgctgagc gatcgcctcg tgtttggccc aactagacct cgtcaagttc gtatttcggc 2580 gccccaccaa ccgcgtctgc tgacaagtgc tcaagaagca agaaccccgt cattgccagc 2640 gctaccaccg agtgaaggca atagagagac tggggaagcc gaacgactgc tgctggagaa 2700 tggcgaaacc gatccgacaa gtggacaaga tgcgacggga gatggctaca cttcggacgg 2760 aagcattggt gagccggaca gcaagcgccc gagaattgac gacgagtacg agattgctct 2820 tgctgcctcg gaacgtattc ccaactcgtt ccgtgaagcg atgcgttctg ccgactcgga 2880 caagtggaag gaggcgtgtc gcgctgaaat ccgagctcat gtgcgcaacc acacttggga 2940 tttagtttac cgtccgcccg gtgttcgagt gatcgggcac aagtgggtct ttgcccttaa 3000 acgcgatgaa cacggaaaca ttatccggta caaggcgcgt ttagttgctc tcggttgctt 3060 ccagacgtat ggtgttgact acacatctac ctactctcct gttgccagtc tcaacacggt 3120 gcggattttt cttgcggtgt gctgccagct cggatacatg gtgaaccagt acgatgttga 3180 aacggccttt ctaaacggcg acctcgaaga ggaattgtac atggtgccgc ctgagtgtct 3240 caatgtttgt gaaggcatgt gtgtcgcctt cgtcgcagtc tctatggctt aaagcaagcc 3300 gctgctgtgt ggcacaagac cattcgaagt gtgttcatcg ccctgggatt caagcagtgc 3360 aagtcggatc cctgcctgtt cgttcgagtt cgtcacaatg gacccgtttt catcgtcctg 3420 tatgtcgatg atctgcttat cggatgtgcg gccgaagaag aggcgtcgag tattgcagag 3480 gcattgggtg cgcgttttag tctcaagtca cttggagatg ctcgctttat tctcggaatt 3540 gagcttcgct acatcacgca gcgtggagag cttttcgttt gtcaggcgca atacatttcg 3600 cgaatcattg agcgatttgg ccaagcagag gctcaccctg tccgaaaccc gagcgtcgtc 3660 gggcaaaatc tgcgtgcaag tgacgaacac gcaaggatga acgagaaaaa gccatttcgc 3720 gaacttgttg gctcacttct ctacgttgct aatgcaacct ggcccgacat ttgtgttgca 3780 gtcagcattc tatcacaaca cctcgaggat ccacgtgaaa tgcattggaa ggcggctgtg 3840 cgcgtgctac ggtacctcaa gggtacactc gctactggtg ttaagtattg gcgcggaact 3900 cagctgcgtt tgctcgcctt cagcgatgca aactggggaa gcgatctatc tactcgccga 3960 tcgacatcag gcgtgcttct gcagccgtgt ggtggaccag tcgtgttcaa ggcgaagaaa 4020 caggcgaccg tcgcgctatc ttcggccgaa gccgagtaca tggcgcttgc ggtgacggtg 4080 caggaagtga tgtgggtgcg gcagctgctc ggagagaagc tggtgggaga tacgtgtgct 4140 actaaagtct tcatcgataa caaggcagcg atcagcatgg cgagcaacag cgggtacacc 4200 ccacgcgcca agcacatcga cctccgcgtg cacttcgttc gtgatcaagt cgaaaaagga 4260 acgatcaagg tccagcatgt gcgctctgct caacaactgg cagacaacct taccaagcca 4320 ctcccgactc cgcagttcat gatactggtg aaggcaagtg gcgttgtcag cagcggcgat 4380 cctggaatgc aagttgaggg ggagtgttga gctgcagcac cacgtcacag attttcatac 4440 ccgacactca cacacactta aggggtataa ttatg 4475 // ID Gypsy-4_PPa-I repbase; DNA; PLN; 5982 BP. XX AC . XX DT 04-NOV-2009 (Rel. 15.07, Created) DT 04-NOV-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; Gypsy superfamily; internal portion; KW Gypsy-4_PPa-I; Gypsy-4_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5982 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 963-963 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 72..2441 FT /product="Gypsy-4_PPa-I_1p" FT /translation="MENENKNFEGSLGGVSGGGSSKGQGMHMDPSIASMFQ FT AFSLSMQQQQSNDRKEALATKALQAVVNKIDQFDGRNISRYLRCYVREMEL FT NRVSEKKMVELFGLATIPEIRDHITSITDRYGNSWEVFSHALKDEYFLEDA FT DRVTKKLFLEWIERPNKNLQATELLREFERQYSQLSKVEKLTLEPNKVDLF FT LQAADGELQGKLELLLEDKEEDEGLTTKWKNVEDAVGLLTKRERRKDRSNI FT PKTVQAPKAPVRTTPPTMPTVQPSTSLSKKADMGMEEIIRGMRDLQIKLAR FT LEENTSTNNSKNVSKQGYVQRCIWCDDASHTRKDCNEFNNMIRQGIICWKD FT GKIALKDREDLLQTNFGKGGMRALVQDYLKEHETAARESASYGARVDDDLG FT GSTETSEFWASAVSTMQEGKLPREALLRTAATIRGATGWEDPVESLSVHAY FT IAKSQHEALMEEKRRGNFDDTREGNSSKRQTRGDKAREAASQELPVKDTSA FT SLEEKTRETKDKGKSIAYKLLSDIEAATNLKGVLEERILNAKVEFTLKEVL FT GIAKKEFHDVIIDSIKRKRQLMGETGMSHAIDARIYKDEEEVDIGYKQPTN FT EKNGYNQRVRFEDYSDKEMETLSHYTRKHWARATTEVLVKVGDIEEPIVAL FT VDHGSEINLMSKDLYKKQKWPIDMEHGWAIRAANNTRGELYGACPDVKIRI FT GDVATEQHFFVQDTTSYPLILGQPYITATRMETKVLDDGSAYARVRSEDGR FT KAVQFLTVPPNHERNRDRLREKPLPKIVEGFKDFGEVPL" FT CDS 2540..5917 FT /product="Gypsy-4_PPa-I_2p" FT /translation="MYKKVDDFKRKERKRLYNIEGELRKLGTLQDDERILG FT VYEENGLEDSLELITSIGLGDNDKIVEIHSREVYTILESFQAPEVTVETRY FT KTADKKVKPVAGPLPEDSKEQMGEASKEASLRDPMSIGHQFTKETFEELKI FT GSDGSLLPEEITCFKKMLAKQGRSFAFESHEIGCVDPNIITPMVIFTVPHV FT PWNLRPIPVPRAHLPKLVELLKEKIKMKILEPSFAPYSSRWFTVPKKNGSL FT RFIQDMQPVNAVTVRNAGIGPIVDEFAEAFAGRAIYSMGDLYSGYDQFQLA FT EGSRDMTTMRTPLGLVRMCTLPQGATNSVAHMMNGMNKVLRDFIPEKTMPF FT LDDVPIKGCREGDKDETLDKRGCRKYVVDHIQDCEKILTRLGEVHLTLSGM FT KSVFGVREVVIVGHLCGSYGRKPDPTKVDAIGRMKEDCDSLTEVRRFLGAC FT VFYRIWIPHYAHIADPLYELLRKGYRFKWEERHIQAMQRLKKLLMSPPILR FT KVDYKCNRPVILTVDASPIAIGWAVGQDDSSGNRFAVRFGAKVLSIRQRAY FT SQVKRELWGVVSAMKAEKDYLIGAVVVIETDCLPLLGMITNCSTPDIAMLR FT WIAYIKSLNPEFKHVTGKDNLVADMLSRARYEREDEMVEDIDDVGLKFYSI FT SNLNREDKLFLEESYEGELLDIGHYLNTLTKQGNWSTEKFKQIRKKAYGFL FT LRDGFLWKRPKKGIGMPQRVIGKKEEKLKLLKEFHDSLWAGHRGIWATFAK FT LKERYWWKNMYRDVLSFVESCEICQSYSNIRHRDGLHPTYPLAIHFKWVVD FT LVIMPVGLWQMRYLVLAREDLSNQVEGRALRTKSTEGICRFLLEDVICRYG FT CVGKITADRGELNAQEARKFFERCGVKLSLTTAYNPEGNAKSERGHPPIVK FT ALVKACNGKVKEWPRLLSFALWADRTTHSSVTGYMPVELMTGRKPIMPIEE FT KVLTWSMLPWEDGLTREELLAIRIRQLEQRSEDVQIALERLKRARLQNKAR FT FDKQHRLRPKAIEEGDWVLVYDNSLDNQHSTLRKFSKRWFGPYVVTTVHDN FT ATYSLRELDGTKLKIPIAGKRVKIFKRRHAEMNMEDLNEGIEIPQQEDESD FT LDNEGDEDELDKDVENIF" XX SQ Sequence 5982 BP; 2038 A; 841 C; 1500 G; 1602 T; 1 other; taagtggtga acccgacgtg aaagcttgag gtggaaggta ttggatttcg tttgatttta 60 tttttatttt tatggaaaac gaaaataaaa attttgaagg atctttggga ggagtttctg 120 gtgggggttc ttctaaagga caaggtatgc acatggatcc gtctattgct agtatgtttc 180 aagccttctc attatcaatg cagcaacagc aaagcaatga tcgaaaggaa gctttggcaa 240 ccaaagcatt gcaagcagtg gtcaataaaa ttgatcaatt tgatggaagg aatatttcaa 300 ggtatttaag atgttatgtt cgtgaaatgg aattaaatcg ggtttctgag aagaaaatgg 360 ttgaattatt tggacttgcc acgataccgg agataagaga ccatattaca tcgattacgg 420 atcgttatgg gaattcatgg gaggtttttt cacatgcatt gaaagacgaa tatttcttgg 480 aagatgctga tcgcgttact aagaagctgt ttctggaatg gattgaacgg cctaataaga 540 atttgcaagc aacagagcta ctaagggaat ttgagaggca gtactctcaa ttgtcgaagg 600 tagaaaaatt gacattggag ccgaacaaag ttgatctatt tcttcaagct gctgatggag 660 aattgcaagg gaaattagaa ctccttcttg aagacaaaga agaagatgaa ggattgacaa 720 caaagtggaa gaacgttgaa gatgcggtgg ggttgcttac aaaaagagaa aggaggaagg 780 ataggagcaa tattccgaaa acagtacaag cacccaaagc tccagtacgt acaacaccac 840 caacaatgcc tacagttcaa ccttcgacat ccttatcaaa gaaagcagat atggggatgg 900 aagaaattat acgaggaatg cgagatcttc aaatcaaatt ggcaagactt gaagagaata 960 cttctacaaa caattcgaag aatgtttcaa aacaaggata tgtacaaaga tgcatttggt 1020 gtgatgacgc ttcacacact agaaaagatt gcaatgaatt taataatatg atacggcaag 1080 gaattatttg ctggaaagat gggaagatag cattaaaaga tagggaggat cttcttcaaa 1140 ccaattttgg caagggagga atgagagcat tggttcaaga ttacttaaaa gagcatgaaa 1200 cagcagcacg agaaagtgca agttatggtg ctagagtaga tgatgacctt ggtggaagta 1260 cggaaactag tgagttttgg gcttctgccg tttctacaat gcaagaaggg aaattacctc 1320 gagaagcgtt attgaggact gcagctacaa tacgaggtgc aacaggttgg gaggatcctg 1380 ttgagtctct ttcagttcat gcatatattg ctaagagcca acatgaagct ttgatggaag 1440 aaaagagacg aggaaatttt gatgatacga gagaaggaaa ttcttctaag aggcaaactc 1500 gaggagacaa ggctcgggag gcagcttcac aagaattgcc tgtaaaggat acctcagcat 1560 cattggaaga aaaaacaagg gagacaaaag ataagggcaa atcaattgct tataagctac 1620 tttctgacat tgaagcggca acaaatttga aaggggtgtt ggaagaacgt atattaaacg 1680 ctaaggtgga attcacattg aaagaagtct tgggaattgc aaagaaggag tttcatgatg 1740 ttatcattga cagcattaag cgaaagaggc aattaatggg cgaaactgga atgagtcatg 1800 ctattgatgc aagaatatat aaagatgaag aagaggttga tattggttac aagcaaccaa 1860 caaatgaaaa gaatgggtat aatcaacgag tacgtttcga agattatagt gataaggaaa 1920 tggaaacttt gagccattat actcgaaagc attgggcaag ggcaactact gaggtattgg 1980 tgaaagtagg agatatagaa gaaccaattg ttgctttagt cgaccatggt tctgaaataa 2040 atctcatgtc taaagatctt tataagaagc aaaaatggcc aattgatatg gaacatggat 2100 gggcaatacg agcagctaat aacacacggg gcgaattata tggagcttgt ccagatgtca 2160 aaattcggat tggggatgtt gcgacggagc aacatttctt tgttcaagat acaacgtctt 2220 atccgttgat tttaggacaa ccttatatta cggcaacacg gatggaaaca aaagtacttg 2280 acgatggttc tgcttatgca agggtacgta gcgaagatgg gaggaaagct gtacaatttc 2340 taacagtacc tcctaaccat gaacggaatc gagataggtt gagggagaaa ccattgccaa 2400 agattgttga aggatttaag gattttgggg aggtaccact gtaaagcgag attatggagg 2460 tacaaaagag gaggtactct cgcgagatga aggtgccttt gatgcgagtt ttattggtat 2520 wttggagaat ggaaatatta tgtataagaa agttgatgat tttaaaagaa aagaaagaaa 2580 aagattatat aatattgaag gagaattacg caagttaggt acattgcaag atgatgagag 2640 gattttaggt gtttatgaag aaaatggact ggaagattca ttggaattga ttacatctat 2700 tgggttaggg gataatgata agattgttga gattcattca agagaggttt ataccatact 2760 tgaatctttt caagcaccag aagtcactgt agagacgaga tataaaacgg cagataagaa 2820 ggtaaagcct gttgccggac cattaccaga agattctaaa gaacaaatgg gagaagcatc 2880 aaaagaagca agtttaagag atccaatgag tattggacat cagtttacta aagagacttt 2940 tgaagaattg aagattggtt ctgatggttc tttattgccg gaggaaatta cttgcttcaa 3000 aaagatgttg gctaaacaag gtagatcgtt tgccttcgaa tctcatgaaa ttgggtgtgt 3060 ggatccgaat attataacac ctatggttat cttcactgta ccgcatgtac cttggaatct 3120 aagaccgatt ccagtaccga gggcacattt acctaaattg gtggaactat taaaagaaaa 3180 gataaagatg aaaatattgg aaccctcatt tgcgccgtat tctagtcgat ggtttacggt 3240 acctaagaag aatgggtcac tacggtttat tcaagatatg caaccggtga atgcagtaac 3300 tgtcaggaat gcaggaattg gacctattgt ggatgaattt gctgaggcgt ttgctggaag 3360 ggcgatctat tcaatgggtg acttgtattc aggttatgat caatttcaac ttgccgaagg 3420 aagtagagat atgacaacaa tgaggacacc acttggattg gttagaatgt gcactcttcc 3480 tcaaggcgcg accaactcag ttgcgcatat gatgaatggg atgaataagg tattgagaga 3540 ttttattccg gaaaagacta tgccttttct ggatgatgtt cctataaaag ggtgcagaga 3600 aggagacaag gatgaaactt tagataagag ggggtgtcgc aaatatgttg ttgatcatat 3660 acaagattgt gaaaagattt taactcggct tggagaagtt catcttacat tatcgggtat 3720 gaagtccgta tttggagtac gagaggttgt gattgttgga catttatgtg gatcttacgg 3780 aagaaaacca gatccgacta aagttgatgc aattggaagg atgaaagagg attgtgattc 3840 tttaacagag gttcgcaggt ttttaggtgc atgtgtattt tatcgaatct ggatccctca 3900 ttatgctcac atagcggatc cattatatga actgttacgc aagggctacc gatttaaatg 3960 ggaagaaagg catattcagg caatgcaaag attgaagaaa ttattgatgt cacctccaat 4020 attgaggaag gttgattata agtgcaatag accagtgatt cttactgtgg acgctagtcc 4080 aattgccatt ggatgggctg tgggtcaaga tgattcaagt gggaatagat ttgcagttcg 4140 atttggagct aaagttttaa gtattcgtca gcgtgcatat tcgcaagtca aaagagaact 4200 ttggggagtt gtttcggcta tgaaagctga aaaggactat ttgattgggg cagtagtagt 4260 aattgaaaca gattgcttgc cattgcttgg aatgattact aactgttcaa cgccagatat 4320 tgcaatgttg agatggattg cttatattaa gtcactaaat ccagaattta agcatgttac 4380 tgggaaggac aatttagtag cagacatgct atctcgagca agatacgaga gggaggacga 4440 aatggttgaa gacattgatg acgtcggatt gaaattctat tcaatatcaa atctcaacag 4500 agaagacaag ctatttcttg aagaatctta tgaaggagaa ttattggata ttggtcatta 4560 cttgaatacc ttgactaagc aggggaattg gtctacagaa aaattcaaac aaataagaaa 4620 aaaagcatat ggatttttgc ttcgagatgg attcttatgg aagagaccga agaaaggaat 4680 tgggatgcca caacgagtga taggcaaaaa ggaagaaaaa ctaaaattat taaaggagtt 4740 tcatgatagt ttatgggcag ggcatagagg aatctgggct acttttgcta aactcaagga 4800 acgatattgg tggaaaaata tgtatcgaga tgtgctctca tttgtagagt catgtgaaat 4860 ctgtcaatcg tattctaata tccgacatcg agatggtctt catcctacgt atcctctggc 4920 tattcatttt aaatgggttg ttgatttggt tattatgcca gttgggttat ggcagatgag 4980 atatttggtt ttagctcgtg aagatttatc aaatcaagta gaaggaagag cattgaggac 5040 aaaatctaca gaggggattt gtaggttttt gcttgaagat gtcatttgcc gctacggatg 5100 cgtaggaaaa atcactgcag atcgtggaga attaaatgca caagaagctc gtaagttctt 5160 tgaaagatgt ggagttaaac tatcactgac tactgcttat aatccggaag ggaatgcaaa 5220 aagcgaacgc ggtcacccac cgattgtgaa agcattagtt aaagcttgta atgggaaagt 5280 taaagagtgg ccacggcttt tgtcatttgc attatgggct gatcgaacaa cacatagttc 5340 ggtgacagga tatatgccag tagaacttat gacaggtcga aaaccaatta tgccgattga 5400 agaaaaggta cttacttgga gtatgctacc atgggaagat ggattgacaa gagaagaact 5460 tctggctatt aggattcgac aattggagca aagatcggaa gatgtgcaga tagcattgga 5520 aaggttaaaa agagcaaggt tacaaaacaa ggcgcgattc gataagcaac atcgattgag 5580 acctaaagca atcgaggaag gtgactgggt acttgtttat gacaatagtc tggataatca 5640 acatagtact ttgcggaaat tttcaaaacg ttggtttgga ccatatgtag taacaactgt 5700 tcatgataat gcgacttact cattacggga gttagatggt acaaaattga aaataccaat 5760 tgcagggaag cgagtaaaaa tatttaaacg aagacacgcg gagatgaata tggaagacct 5820 taatgaaggt atagagattc cgcagcaaga agatgaaagt gatttggata atgaaggtga 5880 cgaagacgaa ctggacaaag acgtagagaa tatattctaa atcaaacagc aattggataa 5940 attggtgcat accggaggat gcacaggttc agagggggtg ga 5982 // ID R2I-4_PI repbase; DNA; PLN; 6562 BP. XX AC AATU01001281.1; XX DT 31-JUL-2009 (Rel. 14.07, Created) DT 04-AUG-2009 (Rel. 14.07, Last updated, Version 1) XX DE A family of NeSL non-LTR retrotransposons - a copy. XX KW NeSL; Non-LTR Retrotransposon; Transposable Element; R2I-4_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6562 RA Kapitonov V.V. and Jurka J.; RT "NeSL non-LTR retrotransposons from the Phytophthora infestans RT genome."; RL Repbase Reports 9(7), 1527-1527 (2009). XX DR GenBank; AATU01001281.1; Positions 12584 19145. XX FH Key Location/Qualifiers FT CDS 379..5526 FT /product="R2I-4_PI_1p" FT /note="RNase H, RT, and restriction enzyme-like FT nuclease domains." FT /translation="MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQN FT PRAAAPARVEVHTVVAPPGRAGGMLPDPGLVEEPIQATYAHDAAQFECALC FT PYVAESMAVLVQHRRSAHRGTRFKDIFTSGCQCSLVFYARIVAASHAVACA FT RRNQRAVPPAPTPVAPTRPEATPQPTGYLAAAMTAAAAAASSDTVVAAATN FT MQSAVPAAAKTTGLQLVPPELEPALPQRASCHAGKRRRLNADEAVTPCTPT FT ARVSPQTEVAMAPHDAPQDDTVLQREAAEPQPDPAATQGAQVQRVEDTTAA FT QDDTVQQDHDADTAQVSPPRRTPTRWGPRPSSTQEPSPMTGEPAATLAARR FT PLTPAATGTRATRWGPCHRAIGAAAIARLVTGLPTEPAQPQRRQPPPPQEP FT PLQPEPQAAAATVAADIAATVAADIAAAAANAAMDVDGGPAADETWLLRFD FT GACRRNPGPGGAGAALFAPSGAVVWTCSHFMPSRSETNNTAEYTALLLGAQ FT SAVHHGAKRLNIEGDSHLILSQVRGAFACNNKRLRSLRNRVQASLRQLDWY FT RLQHIDRKANQHADRLANRALDLRRTVTECGPHAETRNRCFQTPQPLVEPG FT ETHCVPGSDEVLAANTAMEDATAVPTEDDEAEVAARDGGEVFPTIAIGPDS FT APAKQPRLRLKKLDEDDFDAAAAAVTRVSEELASKIVDAGDWTSGEGYISA FT IPERLRAALRPFALPTQPARPQPREPRMQQPPRRPPRVTRDHLEHRLDEAL FT DTMENVQRSTPQNQKAVRRARRRVGRLRSAMDRTRLRKKFATHERECVAEI FT LRRASTEEAANPSQEKCPIDRATLHEYFTATSTQRTPFDYDSAKGTEFRTF FT LEVMSTPSHETSALTAEPTLDEIEDQLAHVKAGSSPGHDGVGYDVYRRFQV FT QLLPLLHAAFRFCWRHRRVPALWKVGFVRLLHKKGDPQQPNNWRPICLQTA FT IYKLYSGLLARRLSKFLEANELLPMAQKGFRAFNGCHEHNFVATTLLDQTR FT RMHRRLYQVWYDLRNAFGSLPQQLMWGVLRQLGVTEEFVARCSGIYEDSYF FT VVGNASDGATEPVRQEVGVYQGCPLSPLLFITALVPLLRALENQDGVGVPL FT ADGVRPCATAYADDIKVFCDSATGIQRCHALVTRFLEWTGLQANPAKCAFL FT PVTRSQHSNPTRDRDIELRIHGEAIATLGLQESYRYLGVGDGFDHVRHRLQ FT LEPKLKQIKREAVALLHSELVPWQILKALKVYIYPKVEYALRHLRPLKSQL FT QGFDSAIVRGLRHLLRLPENSHDGLFFSPTSAGGLGLLSLVELHEALQVAH FT AWQMLHSKDPAIRAIARTQVGQVARKRFKLVEEHWRGREDDLAQRFLNTEL FT AASPHATETRRNGDIGSLWNDVRDTLQTLGLKFAAGDEEEAPGLLQLRVPH FT HTKWLSHSTVLRHVKLHMKLRRMDTWKSKVSQGTTVREHGGVGSRFITAGA FT GLSDAEYRFAIAPRAHLIDTNSTLKRRRLRANDTCRAPGCSYTEPPAHILN FT KCSPNMDAIRKRHDDALERIADALRRKVEKSGGRLEVAINKTVPEYDGAAL FT RPDIVLRNTETKRAIIADLAITHENQPTDATTSSALQQSRDNKITKYQTVA FT AAMMRAGWRVRVTGIVYGSLGSVLPSNFKVYTELLALLKRDARRLNRQLSS FT HCIRASARIWSAHCRRHRERQRSGNASRASRGSGGAPRRTSQASARR" XX SQ Sequence 6562 BP; 1284 A; 2310 C; 1954 G; 1014 T; 0 other; agctcggcct cgcggctgcc ttcccaggcg ccgccgactt cgcgctctgg cgcggcccac 60 acgccgccgc cgagcctcca agcgcgcccg ttggctttcg cagacgcagg gctcgcggcg 120 acggccctcg ccagccccca agaccccccc tacgatgtgg caccacccgg cagggcggcc 180 ggcaggctgc ccgactcggt atcgccgggt gctacactct cagccgctac agctcgggcc 240 ttggcggtcc gctattggcc cttggagctc gacggcgaca gcagcgacga cgaggacgct 300 caagaccccc acgccgccgc cccagaaccc ccagaagacg tcgcgagtgt gcttgcccca 360 cccggcaggg caggcagcat gctcgccgac ccagcagcgc tggcagccgg tctggctcgc 420 gctccgccgc ccccatcggc accccaggac ccaagccccg ccttccctgc tggtcccgcc 480 ggccagaacc ctcgcgccgc cgccccagcc cgtgttgaag tccacacagt cgtggcacca 540 cccggcaggg cgggcggcat gctgcccgac ccggggttgg ttgaagaacc tatccaagcg 600 acgtacgcgc acgacgctgc ccagttcgag tgtgcgttgt gcccgtacgt cgctgagagc 660 atggcagtgc tcgttcagca ccgacggtcg gctcaccgcg gcacccgctt caaggacatc 720 ttcaccagcg ggtgccagtg cagcctagtg ttttacgcgc gcattgttgc cgccagccat 780 gcagtggcct gtgccaggcg caaccagcga gccgtgccac cagctccgac ccctgttgcc 840 cccacgcggc ccgaggctac cccacaacct actgggtacc tcgccgcggc gatgactgcc 900 gctgcggcag ccgcatcaag cgacaccgta gtggcagccg ccaccaacat gcagagcgcc 960 gtgccagccg ccgccaagac tactgggctt cagctcgtcc cccccgagct ggagcctgcc 1020 cttccgcagc gtgcttcttg ccatgcaggc aaacgccgtc ggctcaatgc cgacgaggca 1080 gtgacaccgt gtacgcctac ggcgcgggtg tcgccgcaaa cagaagtggc gatggcgcct 1140 cacgacgcac cccaggacga caccgtccta cagcgtgagg ccgccgagcc acagccagac 1200 ccagcagcaa cgcagggtgc ccaagtgcag cgagtcgaag acacaactgc ggcgcaggat 1260 gacactgtgc agcaggacca cgacgccgac actgcccagg tctcgccgcc ccggcgcaca 1320 ccgacacgct ggggaccaag accaagctca actcaagagc ctagccccat gacaggcgag 1380 ccggctgcca ccctggcagc gcgaagacca ctgactcctg ccgcaacggg cactcgtgcc 1440 acgcggtggg ggccatgtca ccgcgcgatc ggggccgcag ccatcgcacg acttgtcacg 1500 ggccttccaa cggagccagc gcagcctcag cgacggcagc caccgccacc acaagaacct 1560 cctttgcagc cagagccaca agcagcagca gcaacagtcg cagcagacat cgcagcaaca 1620 gtagcagcag acattgcggc agcagcagcg aacgcagcaa tggacgtgga tggtggaccg 1680 gcagccgacg agacatggct gttgcgcttt gacggcgcat gccgacggaa cccaggacct 1740 ggtggagcag gtgccgcact ctttgcgccc agcggtgccg tagtatggac gtgctcgcac 1800 ttcatgccga gccgctccga aacgaacaac accgccgagt acacggcgct actgctcggc 1860 gcacagagcg cagtccacca cggcgccaaa cgcttgaata tcgagggcga tagccacctg 1920 atcctctcgc aagtgcgcgg tgccttcgcg tgcaacaaca agcggttgcg gtctctccga 1980 aaccgagtcc aggcctctct tcggcagctc gactggtacc gcttgcagca catcgaccgc 2040 aaggccaacc agcatgccga ccgcctcgcg aaccgcgccc tggacctgcg ccgcacggtg 2100 accgagtgcg gcccacacgc ggagactcgc aatcggtgct ttcagacacc gcagcccctc 2160 gtcgagcccg gcgagacgca ttgtgtaccg gggtctgatg aggtcctcgc tgctaatacc 2220 gcgatggagg atgcgaccgc tgtgcctacc gaagacgacg aggctgaggt tgcagcgcga 2280 gacgggggtg aggtgtttcc aaccatcgcc atcgggcctg actccgcccc tgccaagcaa 2340 ccacggcttc gcctcaagaa gctggacgaa gacgatttcg atgcggctgc cgccgccgtg 2400 acgcgtgtgt ccgaggagct ggcaagcaag atcgtggacg ctggcgactg gacatcaggt 2460 gaaggctaca tcagcgcaat tcctgaacga cttcgagcag cgctccggcc atttgccctt 2520 ccgacgcagc cagcacgacc acagccccgg gagcctcgta tgcagcagcc accccgccgg 2580 ccaccccgcg tcacacgcga ccacctggag cacaggcttg acgaggcgct cgacaccatg 2640 gagaatgtgc agcgctccac gccgcaaaac cagaaggcag tgcgcagggc ccggcgccgt 2700 gtcgggcggc ttcgttcggc gatggaccgg accagactgc ggaagaagtt cgccacacac 2760 gaacgggagt gcgtggccga gatcctgcga cgtgcttcaa cggaggaggc ggcgaacccc 2820 agtcaggaga aatgtcctat cgaccgcgcc accctccacg agtactttac cgccaccagc 2880 acccagcgga caccattcga ctacgacagc gccaaaggca cagagttccg cacgttcctg 2940 gaggtgatgt cgacgcctag ccacgagaca agcgcgttga ccgcagagcc tacgctggac 3000 gagatcgaag accagctcgc ccacgtcaaa gccggctcaa gtccagggca tgatggggtc 3060 gggtacgacg tgtaccgccg cttccaggtt cagctgctgc ccctcctgca tgcagccttc 3120 cggttttgct ggcgccaccg ccgcgtgcct gccctgtgga aggtcggctt cgttcgcctg 3180 ctgcacaaga aaggtgaccc gcagcagcca aacaactggc gaccaatctg cctacagacc 3240 gccatctaca agctctacag cggcctcctc gcccgtcgac tgtccaagtt cctggaagcc 3300 aacgagctgt tgcccatggc acagaagggc ttccgagcgt tcaacggttg ccacgagcac 3360 aacttcgtgg caaccacgct cctggaccag acgcgccgca tgcatcgcag gctgtaccag 3420 gtctggtacg acctgcgcaa tgctttcggg tcgctgccgc agcagctcat gtggggcgtc 3480 ttacgccagc ttggggtgac agaggagttt gtggctcgct gcagtggcat ctacgaggac 3540 tcatacttcg tggtcggcaa cgcgagcgac ggagcgacgg agccagtgcg ccaggaggtg 3600 ggagtatacc agggctgccc gctcagcccc ctcctcttta tcactgcgct cgtgccactc 3660 ctccgggcgc tagagaacca ggatggcgtt ggcgtcccgc tcgcagacgg agtacgcccg 3720 tgcgccaccg cgtacgcgga cgacatcaag gtcttctgtg acagcgcgac gggcatccag 3780 cgctgccacg ccctcgtgac gcgcttcctg gagtggactg ggctgcaggc caacccggcc 3840 aagtgcgcgt tcctgccggt gacacgcagc cagcacagca accccacacg cgaccgagac 3900 atcgagcttc gcatccacgg cgaggccatc gccaccctcg gacttcaaga aagctaccgg 3960 tacctggggg ttggcgacgg cttcgatcac gtgcgacacc gcctccagct cgaacccaag 4020 ctgaagcaga tcaagcgaga ggcggtggca ctgctgcact cggagctggt gccgtggcag 4080 attctcaagg ctctgaaggt gtacatctac ccgaaggtag agtacgccct cagacacctg 4140 cggccgctca agtcacagct tcagggcttc gacagcgcca tcgtgcgcgg cctgcgccac 4200 ctgctccgcc tgccggagaa cagccacgac ggcctcttct tctcacccac ctcggctggg 4260 ggactgggac tgctgtcgct cgtcgagctg cacgaagcgc tgcaggtggc acacgcgtgg 4320 caaatgctcc actccaagga cccggccatc cgtgccatcg cgcgcacgca ggtgggacaa 4380 gtggcgcgca agcggttcaa gctggtcgag gagcactggc gcggacggga agacgacctc 4440 gcacagcgct tcctcaacac ggagctcgcc gcctcgcccc acgccacgga gacacgccgc 4500 aacggcgaca tcggttccct atggaacgac gtccgcgaca cgctgcagac cctcggactc 4560 aagttcgccg caggcgacga ggaggaagca cctggactac tgcagctccg cgtgccgcac 4620 cacaccaagt ggctcagcca ctcgacggtg ttgaggcacg tgaagctgca catgaaactg 4680 cgccgcatgg acacgtggaa gtccaaggtc agtcagggca cgacggtgcg agagcacggc 4740 ggcgtgggct cacgcttcat cacggcgggt gcaggcctgt ccgacgccga gtatcgcttc 4800 gctattgcgc cccgcgccca cctgattgat accaacagca ccctcaagcg ccgtcgactc 4860 cgggccaacg acacctgccg ggctccggga tgctcctaca cggaaccccc cgcccacatc 4920 ctgaacaaat gcagtcccaa catggacgcg atcaggaaac gccacgacga tgctctcgag 4980 cgtatcgctg acgccctgcg gcgcaaggtg gagaagtccg gcggcaggct cgaggtggcc 5040 atcaacaaga cggtaccgga gtacgacggc gcggccctgc gccccgacat cgtactccgg 5100 aacacggaga ccaagcgtgc catcatcgcc gacctggcga tcacccacga gaaccagccg 5160 accgacgcga ccacgtcttc agcgctacag caaagccgtg acaacaagat taccaagtac 5220 cagacggtcg cggcggcaat gatgcgcgcc ggttggcggg ttcgcgtgac gggcatcgtc 5280 tacggctcgc tcggctcagt cctgccgagc aacttcaagg tctacaccga gctgctggcg 5340 ctgctcaagc gggacgcccg ccgccttaac cgccagctct ccagccactg catccgggcc 5400 agcgcgcgga tatggagcgc gcactgccga cgacaccgtg agcggcaacg aagcggcaat 5460 gcctcgcgag cgtcgcgtgg gtccgggggg gccccgcggc gcacatcgca ggcatcggca 5520 cggcggtaaa cgggtcactt gaccgacagg gcaccaccca ggtagggaac cgccctttaa 5580 aacccaggaa gacacaaaca ccctccacat agtgacatac atattttagc ctagatttca 5640 gttacggaga ggttactaac tggtacataa aattacacat tctgttctaa tcagtgtgaa 5700 aactggtttt cgccttttgg cggacttttt cactcgcatt tttgggcaat cgtctgcggc 5760 tagcttgcta gcggcggacg agcggtctcc gggggcgtac acctttcccc cgcgaggcca 5820 actacaccga tcttctctac acttttctaa ttcgccttcg tcttcggtct tcggctgtcg 5880 gatttttttc tttttgacca atcagagtgc gccatgcgac tcttctggcc aatcagagac 5940 cgggccctgt cctcggacag cgaggcctcc acggccagcc aatcaagtct cggcagcgac 6000 gcgtctttct atagcgcagc tgacgaggcc gatctggcgg cccccgattg gtccgacttt 6060 cggccaatca gcgacgacga gggggcagga gtttacactt ttgcccccgt ttcgacatca 6120 acttcaggcc aaaatggcga tttcgaccct ccacgcgccg tgccactgct cggcaccggc 6180 ggcgattcag cgggtgcaac ttcgggcacg tgtgcaacac atgcagcgcc cattgcacgc 6240 caagcggcat cgcgggacga cgcctcggcc gctcaagcgc agccccgccc ttccagcacg 6300 acctcgcgcc gtttggcgga tcgccatcaa gacgtgcgag agccaggcgg ggtcgggcaa 6360 aatatactta ctctaagtat gcccgaatcc ctgccctctc aggctgtacg cggccccata 6420 cttgatctaa gtatgggagg atccctggcc tctcaggctg tacgcgagac ccgtacggcc 6480 gaatccctgg cttctcagcc tgtacgcggg gctatacttg gtctaagtat gccccggtcg 6540 ctggcctctg agcccgtaca ca 6562 // ID Copia-40_PIT-I repbase; DNA; PLN; 6387 BP. XX AC AATU01009827; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-40_PIT_; KW Copia-40_PIT-LTR; Copia-40_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6387 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009827; Positions 13569 7183. XX CC Positions [3230-3730] - Integrase core CC 'AAAGA' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 3251..5086 FT /product="Copia-40_PIT-I_2p" FT /translation="MLMMDICTMNEPTEGGATMFLLIIDEATRFKWAFLLE FT RKSAATLYVKILLHQLRTQFPKLTVRRLHSDQGGEFTSNALSDYCNEHGIV FT QQFTNAYSPQENGVVERANGTVLPRIRAMLTATHLPNMLWGEALLHIVTTL FT NWLPTKPLGLVSPYKKLYSVTPDVDELRTWGCVAHVRVPPESRQKKEKLEP FT RARLSLLLGYSHDTKGYKFLDLKTAQVVTARGRNTRFHEEFTSNGTYVKQL FT LENAYHDGYHQLPDSVPVARIKTSMETYLPGWSSKSSNVTKQLEMVPIADD FT LQDREHESSGSAKDDLPEEQRVESPAGVDAPVEVAASDETKEPPAAPKSGK FT RRKRKTRKKLETEEKETKTSEIRDPAVQPCLKRPRRTQKPSVRLLDYVVGN FT VMSIHVDIEIPTTYKQARRSKHWLQWKAAMLAELQSLKRHKTWKLVPRAAA FT KGVKVITCRRVFAVKRDERGRVKRFKARLVILSFKQQLGVNYSETYAPVIR FT FETIRVAIYFAVQRGWEVLQYDVKTAFLYGDLDELIFMEQPPGFQTDGPAF FT VCKLLKSLYGLKQAPNVWNRTLHAKLLTLGLERLESDYGLYALKKDGEVTM FT LLSVRGRPIDNGST" FT CDS 5076..6110 FT /product="Copia-40_PIT-I_3p" FT /translation="MGPRELCARIAAALQETFELTTMGTVKHLLGVEILIN FT RPSRQIIYCQKQYVLEVLKRFHMETCNGCTTPEALTPSKAVVPATTEYLPY FT RELVGALQYLVSASTPDIAHATRHLGKYLASYDHTHYAQAKRVLRYLQATR FT DFGLVMDVASASDLCVGCYSDADYANDPVDRRSISGYVTTMDSNVVSYSSR FT KQEINAQSICEAEYVAMAEATKDLLWLAGLCRELVWKHALPVLLGDNQGAI FT SLTTKPGKHSKQKHIDNKYHMVRRNVELKRIITQHIGTEDMVADIMTKPLA FT VVKFSRFRKMLKVLPIVADSDMAATVNEKATSASTAMHDTLTASPAMRSRT FT TD" XX SQ Sequence 6387 BP; 1745 A; 1517 C; 1775 G; 1350 T; 0 other; ggttatgagc ccaatcaggg cgcagcgatc gactgacgta gactctggtg ttgaaaacac 60 acaaaaagaa gttttgacga atcaaggaga agattccccg ggattggtcg aaaggctgaa 120 tggcccggat gatgcgacat tatcgcaatc tgatgctgag cgactaattc gctcattgat 180 cggaattact ggtgggcgac cgttacttcg agtgttactc gaaggtatgc agaattcgaa 240 cacaatcgaa gaaacggggc cagttgaaaa tccgccccct ccgcctccac caccgtcgag 300 ccaaggatcg gttggcagtg gacgaagcta cacgagccga ggagagagca gcctggacaa 360 catgaacccc ggtggtcggt acgacgacaa ggagctgtcc gaccacacca aggcgttgcg 420 caactccgca agcattgtgt tgcctaagct tcacaagaaa gaagactaca aagcgtggcg 480 aagcgaggtg ccgttgcact tcgagacgcg ctcgctaggc gacattacgt atggaggaga 540 gcgatatgac gaagaggaag gtatacgtcg ccctaagtat catgagtggt atgcgacgcg 600 aaagaacaag gcgttctccg cgttggccct atctctatct gtggacttac gcattacgtt 660 caagatcgat gagataagag acaacatgga tgcggcagca atgctgtatt cagcgattac 720 caaacacttt gaggctggag acggcatcaa ttctgactac ttgctacagg acttggtgac 780 tcgccgatta caaccgaacg agtccgttac tgcgtacgtg gaggacatcg gacgaaaggt 840 gacactcctg cgtcaaggaa atggtgaatt tgaagaatga caacatgcaa gcctacttct 900 atcaaactgc gtgttggtat ttcgagatct cgcgcgtgaa cacgcagact ggatcaacca 960 acacgaccga cgtggcctaa agctgtccga ggcgttgcag cgcctgcgct ccgctgaaca 1020 tcagcgtgat cagctgcaac agcagacgaa ccggcctaca acgcggacga tgcaagtcgc 1080 gcaggttagt actggccaag gacaaggacg aggacaaggt caaggctacg gacatggaca 1140 caacagtgga agtggacgtg agtctggaaa gaaacgtggg aagaaccagc gcaagaaggc 1200 aaaggctgca gctgagaaga agaagcacac agcctgcgct aactgcaatg gagatggtca 1260 ctggtatgca gaatgcactg cgcagactgg catgcaactg agaccagacc tggccaagag 1320 acttaagaac aagttgaagt acaagaagtc gccagcttcc ctcatcagct cggtgagacg 1380 agttgaagtt tcccagtctg acagtgagca acgagcccta ttctcgggtc tctcgttgtg 1440 tgcgacgaca cgactggcga ataacgatgg gaacaacgat ggtgtggcga cggctgcaca 1500 catgtctccc gtgtattcgg tgataacacc tgcgagcagt gaggctgaag atatgaatct 1560 ggctgaagag gtgaagacat cggcagtcgg actcgagtcc aagtgtacac ctgcagtaca 1620 cccgaacgtg ccaacgacac cgcagcaact gcaactgaga gttcctgtta atcatatgca 1680 aggtggagaa caagaacaaa aggatggaca agtgcataca ggacaccaag aggtgcaatt 1740 tgctgtacca gcggcgatga aaagccagtg ggagagtggc caatcgcttg gtccacctcc 1800 tgctttgtaa actgcattat actatctggg tcaaggactg atgcagagct cgcaaggacc 1860 tggatctgag ctatggtaca ccaaaggtgg accacaagtg ggtccacctg tgccggggga 1920 tgatcattgt ggacctaatg ttgagcgacg cggacgccaa ggacctgagc aagattacgg 1980 gcgaggatat cagtccaaca tgagtcctta tgagctagga cgcagtggat ttataccagg 2040 acgagctgac tcactacaac tacaaggatg gaactactca cctccgcgga atccaaagag 2100 gaagatcgcc gcaacgtgga aggagccgct cacctccgcg gaacttccaa agaggaagat 2160 caccgcaacg tggaaggagc cgctcacctc ctcgggactt ccaacaagga aggtcgccgc 2220 aacgtagatg gagtcgctca ccgccccgaa acctgcaaca agttagacca ccgcagtctg 2280 gaagaagtcg ctcaccgaga ggaagatcac tgcagcgtgg gcgttcgcca ttgcgttggc 2340 gttcgccacc tcgtggtcgt aattggtctg ctcgtcgtga gccacgagcg aacaaccagc 2400 cgccaagtca ttatggaccc cagccgcaag agccgtggcg tagtggacca tcacccgcgc 2460 gtggaccact actgaatgat tgcattcgtc gaaatgatct tcaacgtcgg aacttgtcgc 2520 caagtcgtcg tggaaactcg cctagacact gcgaaaatcg tgggaatgtt ggtattggtg 2580 gaattcgaca ggtgaatgcg attggtcgaa accaaggaaa gcagtctgat gactcagatt 2640 gggtggagtt ggattttgga ctctggctct caggcgaatg tctgtgaaga cttgtctcta 2700 tttactatca ttcgagaaga tcgcaccagt cggcttgact ttgccaacgg aacatcggaa 2760 catgcaacta tgtgtggttc tgtcttgcta agcattgtaa gccaaacaac tggtgaacaa 2820 gaagaacgcc tccttgagga cgtggtctac actcctaatg caaaggtgaa cattatcagc 2880 ctcggtcact tgcagacggc tgggaagtac aagctgctgg gctcagatga tcagcagtcg 2940 gcttggctct caaagccagg tacttcgttg aagtttatca tgcgagacaa tatctaccga 3000 ttgaagggag agcgagtgtc aggagtgatg gtgatggcag cacgcaaaca agacatggac 3060 agcagaaaga cgatggagtt actgcaccaa cggttcgctc acatgagtat ggacactgtg 3120 agagagctgt cgagtaagct cgatgtcgga gtaaagatta atgcacaagg tctgagctcc 3180 tacgagtgtg ttgcgtgtgc tgctagcaag acggttcaga cttcctgaac ggaagtctga 3240 accgctcgag atgttgatga tggacatatg cacgatgaat gaaccgacgg aaggtggtgc 3300 aactatgttc ctgctaatca ttgatgaagc tactcgcttc aagtgggcgt ttcttctcga 3360 acgaaagagt gcggctacac tgtacgtcaa gattttgcta catcaacttc ggactcagtt 3420 tcccaagctc actgttcgga ggctgcactc tgatcagggt ggtgaattca ccagtaatgc 3480 gctgagtgat tactgcaatg agcatgggat tgtgcagcag ttcacgaatg cttactctcc 3540 tcaggagaat ggtgtggtgg agcgagcgaa tggcactgta ctgcctcgca tccgtgctat 3600 gctgaccgct acacatcttc ctaacatgct atggggagaa gcacttctac acattgttac 3660 gacactgaat tggctaccaa ctaaaccgct aggactggtc tcgccataca agaagctgta 3720 cagtgtgaca cccgatgtgg atgagcttcg gacttgggga tgtgtggcac acgtgcgtgt 3780 ccctcctgag tccagacaaa agaaagaaaa attggagccg agagcacgac tatctctatt 3840 acttggttat agtcatgata ccaagggcta caaatttctg gatttgaaga cggctcaagt 3900 cgtgactgca cgtggacgaa acacgcgatt tcacgaggag tttacaagta acggcactta 3960 cgtaaagcaa ctcctagaga acgcatatca cgatggttat catcagctgc ccgatagtgt 4020 tccggtggca cgcatcaaga ctagtatgga gacgtaccta cctggttgga gctctaagtc 4080 ttcgaatgtg acgaagcagc tcgagatggt gccgatagct gatgacctgc aggacagaga 4140 acatgagtcc agtgggagtg cgaaagacga cttacctgag gaacagagag tagagtcgcc 4200 agccggtgta gatgcaccag ttgaagttgc tgcgagcgat gagacgaaag agccacctgc 4260 ggcacccaag tctggcaagc gacgaaaacg aaagacgcga aagaaacttg aaacagaaga 4320 gaaggagacg aaaacttctg agattcgcga tccagctgtt caaccctgtc tcaagcgacc 4380 tcgtaggacg cagaagccaa gcgtgcggct tcttgactat gtggtgggca acgtgatgtc 4440 tatccatgtg gacattgaga taccgacgac ctacaagcag gcacgtcgga gcaagcattg 4500 gcttcagtgg aaggctgcta tgcttgctga gctacagtca ctgaaacgac acaaaacatg 4560 gaaattggtg ccacgcgcgg cagccaaagg cgtcaaggtt attacgtgca gacgggtatt 4620 cgctgttaag cgtgacgaac gagggcgtgt gaaaagattt aaagctcgtc tcgtgattct 4680 gagcttcaaa caacaactgg gcgtgaacta cagtgagacc tacgcaccgg taatccggtt 4740 tgagacgatc cgtgttgcca tctacttcgc cgttcaacga ggatgggaag ttcttcagta 4800 cgatgtaaag accgcgtttc tttacgggga cctcgatgag ttaatcttca tggagcaacc 4860 accaggcttt caaacagatg ggccagcgtt tgtctgtaag ctcttgaaga gcctctatgg 4920 acttaaacaa gcaccaaacg tatggaaccg aactctacat gccaagttgc tgacacttgg 4980 gcttgaaaga ctggagtcgg actacggctt gtacgcgctg aagaaggatg gagaagtgac 5040 tatgctccta agtgtacgtg gacgacctat tgataatggg tccacgtgag ctgtgtgctc 5100 gaattgcagc cgcgctgcaa gaaacgtttg agctcacaac catgggaacc gtgaagcact 5160 tactaggtgt ggagatcttg atcaaccgac ccagtcgaca gattatctac tgccagaaac 5220 agtatgtact cgaagtactc aaacgatttc acatggagac gtgcaatggg tgtactacgc 5280 ctgaggcttt gacaccctca aaggcggttg ttcctgctac gaccgagtac ctgccctatc 5340 gagagctggt tggtgcgctt cagtatcttg taagtgcctc aacacctgac atcgcacacg 5400 caaccagaca tctcgggaaa tacctagcca gctacgacca tactcactat gcgcaagcca 5460 agcgggtatt gcgctacctg caggctacac gtgactttgg tctggtgatg gatgttgcgt 5520 cagcgagtga cctatgtgtg ggttgctatt cggatgctga ctatgctaat gatccagttg 5580 accgccgcag catcagtgga tacgtgacga cgatggacag caatgttgtc tcctattcat 5640 cgaggaaaca agaaatcaat gctcagagca tatgtgaagc tgagtacgtt gcaatggctg 5700 aagctacaaa agacttgctg tggcttgcag ggctctgccg agaactagtg tggaaacatg 5760 cactacctgt actactcgga gataatcagg gagccatctc tctaacgact aaacccggca 5820 agcacagcaa gcaaaaacac attgacaaca aataccacat ggtgcggcgg aatgtggaac 5880 taaaacggat cattacgcaa cacatcggga cggaggacat ggtggctgac atcatgacca 5940 aaccacttgc ggtggtcaag ttctcccgat tccgaaagat gctgaaggta ctgcctatcg 6000 tggcagacag tgacatggcc gccactgtaa atgaaaaggc tacatctgcg tcaactgcga 6060 tgcatgatac cttgactgcg tcacctgcga tgcggtcaag aacgacggat tagacattac 6120 tgacgacgat gacatgtagt gtgcctgtgt gccgactgga agaaccagtt tcgtgtggct 6180 gtaccacaac actagcatgc aatcaactgc gctggactac ggacatgtgc gattcgagtg 6240 ggagactatg cagctagcaa attacggtga tggtggctat cgtacgacta ttatcagtgg 6300 tgtgtgtacg gatgaagcga tgtgatcgcg tcgatttggc actgcatcgc cgagatcaag 6360 tgggagtgtg agatgctatc ctgctac 6387 // ID Copia-43_PIT-LTR repbase; DNA; PLN; 178 BP. XX AC AATU01002519; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-43_PIT_; KW Copia-43_PIT-I; Copia-43_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-178 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002519; Positions 41821 41998. XX SQ Sequence 178 BP; 56 A; 38 C; 40 G; 44 T; 0 other; tgttagaatg caccttaatt ggtcaaatat gtagccaata gaaaaaggtt caaacatcct 60 acttcttaag gaaacttaat aagtaaacac attgccgagg gatgttaatg gcgaggaggg 120 cgcgtggcgc gcccgcttta aaaggcctcc tcacctttga aactgacggc ctattaca 178 // ID Gypsy-24_PSo-LTR repbase; DNA; PLN; 970 BP. XX AC AAQY01000890; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_PSo_; KW Gypsy-24_PSo-I; Gypsy-24_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-970 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000890; Positions 3947 4916. XX SQ Sequence 970 BP; 214 A; 226 C; 369 G; 161 T; 0 other; tgtagttgtg tggcccgtca cacggccaac agccgcgtgt ccgagctgct ggacgtgcag 60 gagttgacga cggacgtgat gtggcacacc atggcggtgt cggtgacgac gatgtacggc 120 tagatgcggc cggtggcagg ggcaagtcag cgggctggag ccaccgacca acgctggaag 180 tgggcgattg aagttgaagc agcatgactg ccgaagatcg caggagggac gacgtgtgaa 240 ggcgagtcaa ggtggaagca tgccaggagg cgaggcgacg ccagcggagc gaacgtgagg 300 acaagaagtg tcgagtcgac aagaaggggg agaggtccaa gtaggatagg aagggcgctg 360 tagctagagt tagtgtaggc gacggagggg ctacggtaga taggagggag gcgagcggca 420 gccgtgtcga ctcgaccctc agttaagatt tgttgcggga cgtgcagcga gttgagacta 480 atacattgat ctgcgccgga agcacgggtt gctgaccttc gtactgcggc ggagggcgcc 540 ggcgaggagt cgagcagtaa gggagaggta agctgaggta gagctcgcac atgatgaggg 600 cagtggacaa gtagagcgac gggaccgtgg agagagacca cgggggttgt ggcggagcgc 660 ctcgaccgag ggacaaaggg tccacgtgta cctacgggtg aaggacacct gcgtccgttg 720 catgtaaccg ggctagttgc ggggagcagc cgtcggggct acccgaccgt cggtgccgat 780 aacgcttcct cccagtcatc tctatccgtc acgaggtggc ggccagtagc tgtctggtta 840 accactgtaa gaactgcctc gtgctgatgc caccgcggct aacccgctac ctaggtgcag 900 aggtctgcaa tcgatgacgg ctggctgacg acctgtaatg gatggggcag ggaggttggc 960 gctagctaca 970 // ID Sola1-2_Psojae repbase; DNA; PLN; 2328 BP. XX AC . XX DT 12-MAY-2011 (Rel. 16.05, Created) DT 12-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Nonautonomous; KW Sola1-2_Psojae. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2328 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 139..2190 FT /product="Sola1-2_Psojae_1p" FT /translation="MPPRATGGSQSTVPPRKRKKRADRKEAAYNRAVELLG FT EEKVQEIRREWDSWETEFGGREWEQSEGVILQLLQQGLSERVIRAILPVGG FT SRVARLRKVLKEGIDTLHTRRSRAAPVHAFSDSDLATFKNHCLTWILEDGF FT PCPHRRPRQFFNEPGLTWKVVHARYEDDVKREDPNARTMSYSRFIQYVHKL FT YPGVHLSRTTEDDCDCCTRLDIQLGQDGISDEERECLLLQKKMHLSEAIAQ FT RRFVSTFIRNYSALHAPEQYLPRDIIPDTADDNDAGVRSEAFTDESQPNEH FT DVSCNSDDNGDSDAPIAERGGPTSYQNCRVQIQAEDYGGGISMPYFGHSRP FT SIDYYNSNLILQNFVVADISHNVNHVFLYDERAQGKDANALCSLRLFYHLT FT KVHEAASKGLPAAEISFSLLDNCVGQNKSKAVLMFFAMLSIVFPYRKVVLC FT FLLPGHSHNVADRVVAWCRKATQDLNLYTPSDLLKEVNNVKGVSGVFFDHN FT DPKRPFFVGWNDLLSKYFLPPPSGYTANYLFEIDQGICTARKTVDSPDSES FT ISYAMMSTDNVDSIRKAVLAELYGPAVTSIFQASIASVQLPRHPIKELPEK FT KMKSLAAKYFTIPPQYLSYYPSVPEAILNAPVQDGTTPGGPDTDDQGAHKQ FT KQKKRKPGRPRKSPAHPRSNQPSILQFFSAKPASS" XX SQ Sequence 2328 BP; 590 A; 598 C; 586 G; 554 T; 0 other; gaaacggatg gcgggacccc ggggtcccgc ataaaatacc gctcacttcg ggaattattt 60 atttttgtcg ctgcaggcca aatccccctg gctctaccag tcgaaaccac tttgcgtccg 120 tcggcatccg catcaagcat gccacctcga gccacgggag gctctcaatc gactgttcct 180 ccacgcaagc ggaagaagcg ggcggatcgt aaggaggcgg cctacaaccg cgctgttgag 240 ctccttggtg aggagaaggt tcaggaaatt cgacgcgagt gggattcttg ggaaacggag 300 tttggagggc gagaatggga gcagtcagag ggagtaattc tgcaactcct ccaacaagga 360 ttgtcagagc gagttattcg tgccattctt cctgtgggtg gaagtcgagt cgcaagatta 420 aggaaagttc taaaggaggg aattgatacc ttgcacaccc gtcgcagtcg cgcggcgccg 480 gtgcatgcct ttagtgactc agacttggct acattcaaga accactgctt gacatggata 540 ctggaagacg gctttccctg tccacacaga cgacctcgcc agttcttcaa cgaaccaggc 600 cttacttgga aagtggtcca tgctcgatac gaagacgatg tcaagcgtga agaccccaac 660 gctcgcacga tgagctactc tcgtttcata cagtatgttc acaagttgta ccccggcgtc 720 catctatcga gaactactga ggatgattgc gattgctgca ctcggctcga tattcagctt 780 ggccaagatg gcatcagcga cgaagaacgg gaatgtctcc ttcttcagaa aaaaatgcat 840 cttagtgaag ctatcgcaca aagacgcttt gtttcgactt tcatcagaaa ctactcggct 900 cttcatgccc cggaacagta tctaccgcgc gatatcattc cagatacagc cgatgataac 960 gatgctggtg tccgttcaga ggcttttacg gatgaatcac aaccaaacga gcatgatgtg 1020 agctgcaata gcgatgacaa tggtgatagt gatgctccta tcgccgagcg aggtggacca 1080 acctcgtacc agaactgtcg ggtgcaaatt caagcggaag actacggtgg tggaatatcg 1140 atgccttact ttggtcattc gcgtccttca atcgactatt acaacagtaa cctcatactg 1200 cagaacttcg tcgtggcgga catcagccac aatgtgaatc acgttttcct ctacgacgag 1260 cgcgctcagg gcaaggacgc taacgcactt tgcagcttgc gactgtttta tcatctcacc 1320 aaagtccacg aggcagccag taaagggctt cctgctgcgg aaatcagctt cagcttgttg 1380 gacaattgtg ttgggcaaaa taagtccaaa gctgttctga tgtttttcgc aatgctctcg 1440 attgtgttcc cctacagaaa agttgtttta tgctttctgc ttccggggca ctctcataac 1500 gttgctgatc gtgtcgttgc ctggtgtcgt aaggcaactc aagatttgaa tttgtacacg 1560 ccgtccgacc ttttgaagga agtgaacaac gtgaaggggg tgagcggtgt gttctttgat 1620 cacaatgacc caaagagacc gttttttgtg ggatggaacg atttactcag caaatatttt 1680 ctaccgccac cgtccgggta cactgctaac tatttgtttg agattgatca aggtatttgt 1740 actgctcgca aaacggttga ctcaccggac tctgaatcga tctcgtacgc aatgatgagc 1800 actgacaacg tcgacagcat tcggaaagcg gtcttggcgg aactgtatgg gcctgcagtc 1860 acaagcatct ttcaggcgtc gattgcgtca gtccagcttc cgcgtcaccc gatcaaagag 1920 ctgccggaga aaaaaatgaa gtcgctggcg gccaaatact tcacaatacc accgcaatac 1980 ctcagctact acccgagtgt acctgaagcc attctcaatg ctcctgttca agatggtacg 2040 actccgggtg gacccgacac tgatgatcaa ggagctcaca agcaaaaaca aaagaagcgt 2100 aaaccaggtc gaccccgaaa aagccccgct cacccccgta gcaaccagcc ttccatactg 2160 cagtttttca gcgcaaaacc agctagtagt taggccaagg acatcctagt ccgtgcattc 2220 attacccaca tacataatac attagtactt aggagtgtga tatggttacc ggtttgtggt 2280 gagagcaccg gggtccggat gggaccccgg ggtcccgcca ttcgtttc 2328 // ID Copia-14_PIT-I repbase; DNA; PLN; 5188 BP. XX AC AATU01002991; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-14_PIT_; KW Copia-14_PIT-LTR; Copia-14_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5188 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002991; Positions 58948 53761. XX CC Positions [2168-2671] - Integrase core CC 'CCGAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..5017 FT /product="Copia-14_PIT-I_1p" FT /translation="MSPRRRAGSPVRSTQSSRASDELQLPARADETTSDET FT HATSQASSTRVEQQLELLLAQFGTVMTTLTNQQQVQNIPVEASTRRPQRQL FT IQEFSAARAQPQRVPTPYGPRRGNPSTEELTADASTRQSEPPRNPRTSEAA FT AQPVQTEAGTDSATDEPMVGDHRCTRCMNQSGHVQLNARLTDTNYQTWRVE FT ICSILDVAHLLDPIMERETMADQRNEGQRGCFKQRLGVAQRELTMGLSQEL FT QMRFTSVIQRADPILLWRTLEDHFDNHPGVNSVFLKRDMLNRRLQRDERLD FT DYIRDIDDYQQRLRRANKQLPEQEAVSILLSNTVGVYPAVVNEHEVRIGRD FT ESITWEQAIERLRLADHSRQETELQQGRGGGGRAVQRDVAFVGGRGDGHND FT GRGRRNSSSSQARGNNNRNNRRSRSSSPRGRNKRQKSKSSSSARDDIAKRK FT AKTKCNTCGEQGHWSGDPECRQRGNNNNNNNSSNPPRRMIDVVTVKTAKSA FT APTQAEGQEHVLAVRDNFNYKDKDKDQDMVEWVLDSGAQTNVSSDLTLFTE FT LHEDSVAELVFGNGTTERATVGTVLMQVLNEHTGKIEERLLDDVSYAKSAA FT YNLISQTYMQFKGNFKVRISHDQKTTWLVKDTLKLRFKYIRGMYRMWTPRQ FT SKNVMSVKASEAENPMTLLHNRMGHVNMETIKTMAGTYNFGINMQSKNFAL FT YECIPCLESKTKRMSYKRKPSRSAKPLHKLCVDLCSVGVDTISKSNQFLLI FT IDEATRYKWGYLLAYKDEATELIQKQIRWIQNQFPKATIKTLFSDGGGEFV FT NMQLETFCKDLGIDTRSSNPYSPQENAIVERTNQTVMRQVRSMLQATQMPV FT SLWGEAFLHAIETLNKTPTPVLKDQQSPYEALYGERPDLSVLRTWGCLVHA FT HIPDDSRQRKEKLTPRTQMCLLLGYSEKTKGYKLLNLRTGSVTTCRDGNMK FT AHEKYTVNTVYIEQLLANTYAYGDYDLPAEIPIVPIRTTMSTYLQLPAELA FT EKRAAEMAKLATAGKSQDQGVEVEAESATRSDDPQLPSEDAKKPAASVGGS FT KRKNTKGKNKAKACANRVGASKAKDSRRDAHEDESWEPCTTQKSSPDDSAA FT TSRPKRKRQPSARLKDYVVTNVTKQNVEDVQIPISHKHAARSKKWKEWKAA FT MQVEMDSQQQHETWVLVRRTEAKGKRVISCKWVYALKRDSTGRIKRYKARL FT VIRGFLQRMGIDYSETYAPVIRFETIRCVIVYALQRGWAILQFDVKTAFLY FT GDLDEEVYMEQPPGFGEDSTRYVCKLQKSLYGLKQAPRVWNKTLHKFLTKI FT GLERLDSDYGLYARKVGGEVTMLLTVYVDDLLLLGPNDLCAKVAMQLSEEY FT ELTSLGPVKYLLGVEILIDSERRHAVFCQRQHITEVLKRFHMEGCNAVATP FT EALRAEVVTDAKDDSPPPYRELVGALQYLVSASRPDIAHAVRNLSKYLSCF FT DHTHYAMGKRVLRYLSGTQDHGLVMDIVIWNDVKLTCYTDADYANDPDDRK FT SVSGFVTFVNGNVVSYGSRKQEINAQSTTEAEYIAMNEGTRDLQWLRGLCE FT ELCWEFATPEIIGDNKSCIYLTAKPGKHSKNKHIMNKFHLVRHLVENEQLR FT IRHVGTDDMIADAMTKPLPKDKFEHCRDGMKVLRIDRQQGSARSVGAKHHR FT HA" XX SQ Sequence 5188 BP; 1428 A; 1344 C; 1471 G; 945 T; 0 other; ggttatgagc ccaagaagga gagctggaag cccagtccgg agtacgcaga gctcgcgcgc 60 gtccgacgag ttgcagttac ctgcaagagc agacgagaca acgtcagacg agacacatgc 120 gacgtcacaa gcgtcatcaa cccgagttga gcaacaactc gagctcttat tggcccaatt 180 tggtaccgtt atgactacac tgaccaatca gcagcaagtg cagaacattc cagtggaagc 240 atctacccga cgcccacaaa ggcagctcat tcaagaattc tcagcggctc gagcacaacc 300 gcagcgagtg ccgacgccgt acgggccccg ccgaggaaac ccaagcacag aggaacttac 360 cgccgacgcc agcacgcgtc agagcgagcc gccaagaaac ccaagaacgt ccgaggctgc 420 agcgcagcca gtccagaccg aggccgggac cgactccgct acggacgaac ccatggttgg 480 agaccacaga tgcacgcggt gcatgaacca gagcggacac gtgcagttga acgcaagact 540 taccgatacc aactaccaga cgtggcgcgt cgagatttgc tccattctcg acgtcgcaca 600 cctcttggac cccatcatgg agcgcgaaac gatggcagac caacgtaacg aaggacagcg 660 cggctgtttc aagcaacgac tgggtgttgc tcaacgtgaa cttacgatgg gacttagtca 720 agagctacag atgcgattta caagtgttat tcaacgtgct gatcctatcc tactgtggcg 780 aacactggaa gatcattttg ataaccatcc tggagtaaac agcgtgtttc tcaagcgaga 840 tatgctgaat cgtcgcctgc aacgtgacga acgacttgac gattacattc gtgacatcga 900 cgactaccaa cagagacttc gccgcgcgaa caagcagctg cctgagcagg aagccgtctc 960 tatcctattg tcgaatacag tgggtgtgta cccagcggtg gtaaacgagc atgaagtacg 1020 tattggacgt gatgagtcca ttacgtggga gcaagcgatc gagcgccttc gactcgctga 1080 ccactcacgc caagagactg agctacagca aggacgtggt ggaggtggac gtgccgtcca 1140 gcgagatgtt gcatttgttg gtggccgtgg cgacggacac aacgacggaa gaggacgtcg 1200 aaactcgagc agcagtcaag cacgaggcaa caacaaccgc aacaatcgtc gcagccgcag 1260 ctcatcgccg cgtgggcgga acaagcggca gaagagcaag agctcatcca gtgcgaggga 1320 tgacatcgcc aagcgaaagg cgaagacgaa gtgcaacacg tgcggagagc aaggacattg 1380 gagtggcgat cctgagtgcc gccagcgtgg caacaataac aacaacaaca actcgagcaa 1440 cccgccgcgc aggatgatcg atgtggttac tgtgaagaca gccaagtcgg ctgcaccgac 1500 tcaagctgaa ggacaagagc atgtactcgc ggtgcgtgac aacttcaact acaaggacaa 1560 ggacaaggac caggacatgg tggagtgggt gttggatagc ggcgcgcaga ccaacgtctc 1620 gagcgacctt accttgttta cggagctaca cgaagactca gttgcagagc tagtcttcgg 1680 caacggcaca accgagcgcg caactgtggg cacagtgctt atgcaagtgc tgaacgagca 1740 cacgggcaag atcgaggagc gcctccttga tgacgtgagc tacgccaagt cggctgccta 1800 caacctgatc tcgcagacct acatgcaatt caaaggaaac ttcaaggtgc gcatctcgca 1860 tgatcagaag actacgtggc tggtcaagga cacattgaag ctgcgcttca agtacatccg 1920 cgggatgtac cgcatgtgga cgccacgtca gagcaagaac gtgatgagcg tcaaggccag 1980 tgaagctgag aaccccatga cgttgttgca caaccgcatg ggccacgtaa acatggagac 2040 tatcaagact atggcaggaa cctataactt tggcatcaac atgcagtcga agaattttgc 2100 tctctatgaa tgcattccat gcttagagtc aaagacgaag cgcatgagct acaagcgcaa 2160 gccgtctcgc tctgcaaagc ccttgcacaa gctttgtgtc gacctatgca gtgttggagt 2220 ggatacaata tcgaaatcaa accagtttct attgattatc gacgaagcta cgagatacaa 2280 gtggggatat ctattagcct acaaagacga agccacggag ctgattcaga agcagattcg 2340 ctggatccag aaccagttcc cgaaggcgac catcaagacg ctgttctccg atggtggtgg 2400 cgagttcgtc aacatgcagc tcgagacctt ctgcaaggac ctcggcatcg acacgcgttc 2460 atccaatccc tacagcccgc aggagaacgc tatcgtggag cgcacgaacc agaccgtcat 2520 gcggcaggtc agatctatgt tacaagctac gcaaatgcct gtttcattat ggggagaagc 2580 cttcctacat gcaattgaga cgctcaacaa gacgccgacg ccggtgttga aggaccagca 2640 gtccccgtac gaggccctgt acggagagcg gccagacctc agcgtgctgc gcacgtgggg 2700 gtgcttggtg cacgcgcaca tccctgatga ttctcggcag agaaaggaga agctcactcc 2760 aaggacgcag atgtgcttac tacttggcta cagcgagaag accaagggct ataagctgct 2820 gaacctgcgc acaggatcag tgacgacgtg cagagatgga aacatgaagg cacatgagaa 2880 gtacacggta aacactgtgt atattgagca acttcttgca aacacctacg cttacggaga 2940 ctacgactta cctgcggaga tcccgatcgt gccgatccgg acgacaatgt ctacgtacct 3000 gcagcttcct gcagagcttg cagaaaagcg agcagcggaa atggcgaagc tggctactgc 3060 tggtaagagc caggaccaag gtgttgaagt tgaagccgag tctgcgactc gaagtgatga 3120 cccacagcta ccaagcgagg acgctaagaa gccagcagct tcagtgggag gttccaagcg 3180 gaagaacaca aaaggcaaga ataaagcgaa agcatgtgca aatcgagtgg gagcctcgaa 3240 ggccaaggac agtcgacgtg atgctcacga agacgagagc tgggagccat gcacgacgca 3300 gaagtcgtcg ccagacgaca gtgcagctac gtcgcgaccg aagcggaagc gacaaccatc 3360 cgcccgactc aaggactacg tagtgacgaa tgtgacgaag cagaacgtcg aggatgtgca 3420 gatccccatt agtcacaagc atgcggcaag gtcaaagaag tggaaggagt ggaaagcagc 3480 gatgcaagtt gagatggact cacagcaaca gcacgaaact tgggtgctcg tgcgacgcac 3540 ggaggccaag ggcaagcgtg tcatttcgtg caagtgggtg tacgcgctca agagagactc 3600 tacgggccgg attaagcgat ataaagctcg actagtgatc agaggctttc tacaacgcat 3660 gggcatcgac tacagtgaaa catacgcacc tgttatcaga tttgagacga tcagatgcgt 3720 gatcgtatac gcgctgcaac gcggatgggc catcttgcag ttcgacgtca agaccgcgtt 3780 cttgtacggt gacctcgacg aggaggtcta catggagcag cctccaggct tcggagaaga 3840 ctctacgcgc tatgtatgca agctacagaa gagtttgtat gggctaaagc aagcgcctcg 3900 cgtttggaac aagacattgc acaagttcct gacgaagatc ggactcgagc gcctcgactc 3960 tgactacgga ctctacgcca ggaaagtggg aggagaagtc accatgttgc tcacggtgta 4020 cgtcgacgac ctactgctcc tcggccctaa tgacctttgc gctaaggttg ctatgcaact 4080 cagtgaggag tatgaactca catctctcgg accagtcaag tatctactag gcgtggagat 4140 actgatcgac agcgagcgtc gacatgcggt attttgccag cggcaacaca ttacggaggt 4200 gctaaagcga tttcacatgg aggggtgcaa cgcggttgca acaccggaag cgctgcgcgc 4260 tgaggtggtc acagatgcga aagatgactc cccgcccccg taccgagagc tcgttggtgc 4320 actacaatat ctggtctcag cctcaaggcc ggacattgcg cacgctgtgc gtaatctcag 4380 caagtacctg tcctgcttcg accacacaca ctacgctatg ggaaagaggg tgctacgcta 4440 cctgagtggt actcaagacc acggcttagt gatggacatt gttatttgga acgacgtcaa 4500 gctgacgtgt tacaccgatg ctgactacgc taatgaccct gatgaccgaa agagtgttag 4560 cgggttcgtg acgttcgtca atggtaacgt ggtttcgtac ggatcaagaa agcaagagat 4620 taacgcacag agcacaacgg aagcagagta tattgccatg aatgaaggca ctagagatct 4680 acagtggcta cgtggactct gtgaagaact atgctgggag ttcgcgactc cggagattat 4740 cggcgataac aagtcgtgca tctatctgac tgccaagcct ggcaagcaca gcaagaacaa 4800 gcacattatg aacaagttcc acttggtgcg ccacctcgtg gagaacgagc agctacggat 4860 tcgccatgtt ggcaccgacg acatgatcgc cgacgcgatg acgaagccat tgccgaagga 4920 caagttcgaa cattgccgtg atgggatgaa ggtgctgcgc atcgaccgtc agcaaggctc 4980 agctcgttca gtgggagcca aacatcatcg ccatgcgtga atgcaagcta ctactacccg 5040 ttcatgcatg cgaaggacaa gaaggaggaa gagcgctacc aaggacgaag cgtcgtgctg 5100 cagcgcagct agaagatgcc aagaacatcg tggtgagctc tacaaggtga tcatgttgaa 5160 gctgcgcttc gactagatca agtgggag 5188 // ID Gypsy-29_PSo-LTR repbase; DNA; PLN; 587 BP. XX AC AAQY01000515; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_PSo_; KW Gypsy-29_PSo-I; Gypsy-29_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-587 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000515; Positions 29460 30046. XX SQ Sequence 587 BP; 117 A; 163 C; 205 G; 102 T; 0 other; tgtcacgagt gagaacggtg gaacggtggc cgaccgtgtt gggaacggtt gggaccgttg 60 gcctcggcgc cccgtcccat atgcgacctt catgggagag aacaactggg cgaacggggg 120 cgagacgagc agtcatcgca attgggtgcc gccgtgtcag atctcattcg gcacgagcgg 180 gctaactggt ggccccgcgg cgtgcctagc cgccatggaa gcagtggcgc atgcgccgaa 240 cgcgcgccga cttgaagagc aggacggagg tcacggtggt cggcgtggct cgggccaagc 300 gtgcgatgcg agccaaggac gaaggggtga agtgtagcca agggcgaaat ggagcaattg 360 aagtcggcaa gcgtgccggc agcggactta acgagagagc gcggagcgag cgctccgtgc 420 caggttagtc aggacagtcg cgaatttgct ttgggtctaa caagtcagaa cgctgtgcat 480 attgaaccgt gcttagctgc ttctgcttgt ccgtctaatc ctcctcaacc gctcgtgcct 540 cgctactcac ggcggcgacc gtgcccgacc cgattcgact cgcgaca 587 // ID Gypsy-24_PIT-LTR repbase; DNA; PLN; 299 BP. XX AC AATU01001488; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_PIT_; KW Gypsy-24_PIT-I; Gypsy-24_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-299 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001488; Positions 26616 26914. XX SQ Sequence 299 BP; 87 A; 74 C; 75 G; 63 T; 0 other; tgtagtggtg gatggcttca acggaccaag cctagcccat gcactgggga atgtcgacag 60 gcagacattc ccaagctggc aacaagatgc gatagtacag atagctacca catcccagta 120 cgagactagg cagcaggatt cagtatgaga ctaggccagc atgaagtacg agactagcca 180 tagctgtagt ctacgacagg tcgtgttaga gctcactttg agatatgcca aaccacttac 240 agagctttag tttgccagga agcgccagct tcccaaatag tgtttctaga cccactaca 299 // ID Gypsy-10_PIT-I repbase; DNA; PLN; 6615 BP. XX AC AATU01002354; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PIT_; KW Gypsy-10_PIT-LTR; Gypsy-10_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6615 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002354; Positions 89946 83332. XX CC Positions [4335-4814] - Integrase core CC 'GGCAA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 36..1067 FT /product="Gypsy-10_PIT-I_2p" FT /translation="MNDMPMPDVPKLPNTSLEHDSFPHLSSIEWEALHRLA FT AASGEAVIHTLLTAGTEAQHRLAAQEFMARELADLRQRVSTPTLSKNRTDI FT VKLDVSSYSGEGDGRLHLNRWFCEVDIAVEARQLSTELARTRFLLSKLTGK FT AKEWALGKLVVNPSCFPTMAAMKSDLRLAFEPPQDERVQRSAFLSLQQGKM FT SMLEYIQRARHLISCITTHPVDMATQVHVFVSGMNTGYQRFYLTRKSPSTL FT EEAFAVALREDYSVAASQAFDFSRAPASEPEPEPMEIDAIRHFDRSRSTTR FT PPRSPTRSQRSMKCFRCRKPGHRAAVCRAPAPVLANVTVESEVVVPKNGDN FT Q" FT CDS 950..2719 FT /product="Gypsy-10_PIT-I_1p" FT /translation="MLPLSQARTSRGGVPRAGTCPGKRHGGVRGRRSKKRR FT QPVGAGRPTGNGRRDASLVAEPPPSPPVLYARLFATTSGSDSRLIILSLHV FT DGAQRPIRALLDSGATNNFVRADSLSVLPPTTRISEGPGHMVVKYADGEPR FT RMPRRSVAFAYAFDGFSSSDDFLVIELSGSFDCVFGIPWLVRHQPHIDWLT FT RTVRPRDIDINAVLAYLSGTPSLWPHVAVMDPDSMTTPALEESDGPSYAAS FT APATCAGPESEPQGVSDVVELSIPHLGEQWLPPREAVEREFLPAVEQGFPR FT AVELELPVPVNMVEPELPRMVERELPDVVDAIVLHDSCPGADDIPRRPTDL FT AMIEYELSSPDVLRPVRRRSRRNPRRPRAPSQDSVLSEFETITVLAGHASN FT DLPRRREVEVARPPCDAAAITKLPGLSWKHFLRDLKHGDVEQVCLLVASDA FT AFIATVHVDTDASAPDPQTRPTGAEPKTAREARYAAQSLPALEASGNPVAP FT LVREFIDIFPDKVPAALPPDRGVRHEIDLVPGAKYCVTRQWPLPRDQVEAI FT GAFFESRRQAGHVRESLSPHSSPTFCVKKATGGVEDRPRLQQA" FT CDS 2766..6047 FT /product="Gypsy-10_PIT-I_3p" FT /translation="MILDSMSGSTTYSAIDLMDGFYQILMREDDVPLTAVS FT TPSGMLWEWLVMPQGLKNAPATFNRMVSHLLRPYRDFAPSYFKTSSFIVMP FT DADMTDIEVHLQHLRTVFGVMRENKLYANLKKCIFCAPEIPVLGSYVSKDG FT VRADPEKVAAICAWPSPQDAKQLRQWLGLATYLHHYSKNFAATVRPLSQLL FT KTDATWTWRPEHQAAFDAVKTSLSTAPVLMLPDHSKPFHVVCDASDFAIGC FT ALMQFDAAGRERVVSYQSRQLKPAERNYPVHDKELLAMRYALLKFRVYLLG FT EQTFVVYTDHASLRTATKSPHLSQRMARWLSLFSEYNFVVHYKPGKTNILA FT DALSRRPDYAQLGRHAIGDEDDDECAVCSAEDVTAMEVAATSSLRDAISAA FT YASDAACSELISYLHDLSEPARRRLSPRARSRLSRFRLHEGLLTYSVDNED FT SPRIVVPLDDDLRARLIHEFHDSPSGGHLGREKTFASLSRDYYWPHMYKWV FT RKWVRSCEACQRVKPSPSKQAPLRPRQVASEPWSSVSMDFVFGLPRDAQGR FT TGILVFVDRFSKMVHLAPVAATVTAKQSAATFLDLVYRHHGLPTSIVSDRD FT PRFTSAFWSEIFRLVGTRLKMSTASHPETDGQTERANRVVEDVLRSFATSF FT TSWSSFLPMVEFAINNAVHASTGLTPFYVNYGRHPRVPALLGMDRRSPVES FT DAVTPAPVPPPNETDASDVAPSAIPADDSREQAHDVTSAILNAVTTRRGAA FT SAAPSVRTRGATEATPSSLTTWTPRTLINPRQHRRAVEYHAATGSAASPEP FT PPANFNPNPESLPRDAAAALAFVQRRESVIRYVRDAIAMAVDRQKENADRR FT GRKNLATFAVGDRVLLSTDGITPTSVTNLGANKLAPRYIGPFKILKALDDA FT YTLRLPTALRLHPTFYVGRLRRYHPSSIPSDADGSPRPDFGDHPEARPDVA FT RDGAALDSPAPDTPHAEATDPDAARSQRLPAVRGPPFQRDGPAPLVDSAGN FT LRHIVDRILEHEDPRAAPNLAHTSHGADRHDAAIPPLRRYLARWLGPMKDS FT WEPRAILLADVPDCVAEYEAGLVPAADRHAGAAVRRA" XX SQ Sequence 6615 BP; 1248 A; 2222 C; 1792 G; 1353 T; 0 other; cctggtagca ctttgtcatc cgtccaacgc tcacgatgaa cgacatgccg atgcccgacg 60 tgcccaagtt gcccaacacg tcgctggagc acgacagctt cccccacctc tcttcgatcg 120 aatgggaggc gttgcaccgc ctcgctgctg cgtccggcga ggctgtcatc cacacgttgc 180 tcactgctgg aaccgaagct caacatcgcc ttgccgccca agaattcatg gcgcgtgaac 240 tcgctgacct ccgtcagcgc gtgtcgactc ccacgctgtc caagaacagg actgacatcg 300 tcaagctcga tgtctcctct tatagtggtg agggcgacgg tcgcctccac ttgaacagat 360 ggttctgcga agtggacatc gcagtcgaag cccggcagct ttccaccgag ctcgcgcgga 420 ctcgcttcct cctttccaaa ctgacgggga aggcaaagga gtgggccctc ggcaaactcg 480 ttgtcaaccc ctcatgcttt cccacgatgg ctgcaatgaa atctgacctg cgactcgcgt 540 tcgagccgcc ccaagatgag agagtccagc gttccgcctt cctgtcgttg cagcaaggca 600 agatgtccat gctcgagtat atccagcggg cacgtcacct catctcgtgc atcacgacac 660 atccggttga catggcgacc caagtccatg tcttcgtgtc cggcatgaac accggctacc 720 aacgcttcta cttaacgcgg aagtccccat ctacgctgga agaagctttc gcggtggccc 780 tacgcgaaga ttacagcgtc gcggcatctc aagctttcga tttcagtcgg gctccggcct 840 ccgaaccaga accagagccg atggagattg atgccatccg ccacttcgat cgttctcggt 900 cgacgacacg tccaccgcgc tccccgacgc gcagccaacg ttcgatgaaa tgcttccgct 960 gtcgcaagcc cggacatcgc gcggcggtgt gccgcgcgcc ggcacctgtc ctggcaaacg 1020 tcacggtgga gtccgaggtc gtcgttccaa aaaacggcga caaccagtag gtgcggggcg 1080 ccctactggg aatggaagga gagatgcatc tctggtggca gagcctcctc ctagccctcc 1140 agtgctttac gcacgacttt tcgccaccac ttccggcagc gactcgagac tgattattct 1200 cagtcttcac gttgacggcg cccagcgccc gatccgtgcg ttgctggact ccggcgcgac 1260 gaacaacttc gttcgcgccg acagcttatc ggtgttgccg ccaaccacgc gcatcagcga 1320 aggtccaggc cacatggtcg tcaaatacgc tgacggcgag ccgcgtcgga tgccccggcg 1380 ctcggtcgcc ttcgcgtatg cattcgacgg gttctccagc tcggacgact ttctggtgat 1440 cgagttgagc ggttcattcg actgcgtctt cggcattccg tggctagtgc gtcaccagcc 1500 tcacatcgac tggttgaccc gaactgttcg gccacgcgat atcgatatca acgcagtact 1560 ggcgtacctg agcggtacgc ccagcctctg gccacacgtt gctgtcatgg accccgactc 1620 catgaccacc cctgcacttg aagagagcga tggcccttca tacgcagcca gtgctccagc 1680 aacttgtgcc ggtcctgagt cggagcctca gggcgtttcc gatgtggtcg agctgagtat 1740 cccacatctt ggtgagcagt ggctcccacc tcgtgaagcg gttgagcgtg agttcctgcc 1800 cgcggttgaa caggggttcc cgcgcgcagt cgagctggag ctccctgtac ctgtgaatat 1860 ggtcgagcct gagctcccgc gcatggttga gcgggagctc cctgatgttg tggatgcaat 1920 cgttctacat gattcgtgtc ccggcgccga tgacataccc cggcgcccaa ccgatctcgc 1980 catgatcgag tatgagctct catcgcccga tgtactccgt cctgttcgtc gtcgtagtcg 2040 ccgtaacccc cgccgacctc gtgccccgtc gcaggactcc gtcctgagcg agttcgagac 2100 tatcacagtc cttgctggac acgcctcgaa cgatcttccg cgtcgccgtg aggttgaggt 2160 cgcacgtcca ccgtgcgacg ccgcggcaat cacaaagctc cccggtctct cttggaaaca 2220 tttcctccgc gacttaaagc acggcgacgt cgaacaagta tgcttactcg tagctagcga 2280 cgccgcgttc atcgcgactg tccacgtcga caccgatgcc tcagcgccgg acccccagac 2340 gcgccccacg ggcgccgaac cgaaaacagc ccgtgaagcg cgctacgctg cacaatcgtt 2400 accggccctc gaagcttccg gtaaccctgt ggcccctctc gtccgtgaat tcatcgacat 2460 cttccccgac aaggttccgg cggcccttcc gccggatcgc ggagtccgac acgagatcga 2520 tctcgtgcct ggcgccaagt actgtgtcac cagacagtgg ccgcttcccc gcgaccaagt 2580 cgaggcgatc ggtgcctttt tcgaaagtcg ccggcaagcc ggccacgttc gcgagagctt 2640 gtcaccccac tccagtccta cgttctgtgt gaagaaagcg accggggggg tggaggatcg 2700 tccacgcctt caacaagctt aacgacgcca caatcccggc acaaacgccg atcccacgaa 2760 atgacatgat tcttgactcc atgtcgggca gcaccacgta tagcgcgatt gatctgatgg 2820 acggcttcta tcagatcttg atgcgcgaag acgacgtgcc gctgaccgcc gtcagcacgc 2880 ccagtggaat gctgtgggaa tggctagtca tgccgcaggg gctcaagaac gcccccgcca 2940 cctttaaccg catggtgtcc cacttgctgc gtccatatcg cgacttcgcg cccagttact 3000 ttaagacatc ttcattcata gtcatgcccg acgccgacat gactgacatt gaagttcatc 3060 tccaacacct acgaacggtg ttcggagtga tgcgtgaaaa caagctctac gccaacctga 3120 agaaatgcat cttctgcgcc cccgagattc cagtcctcgg gagctacgtc agcaaggacg 3180 gagtccgtgc tgaccccgag aaagtggcag ccatctgcgc ctggccatct cctcaagacg 3240 cgaaacagct ccgacagtgg ctcggcctcg cgacgtatct ccatcactac tcgaagaact 3300 tcgcggcgac agttcgtcca ctgtcgcaac tactcaagac cgatgccact tggacatggc 3360 gtccagaaca tcaagctgcc tttgacgcgg taaaaacgag cttatccacc gcgcccgtcc 3420 tgatgctgcc tgaccactcc aagccatttc acgtggtatg cgacgccagc gactttgcca 3480 ttggttgcgc cttgatgcaa ttcgacgcag cagggcgcga acgagtggta agctaccagt 3540 cgcgccagct gaaaccagcg gaacggaatt accccgtaca cgacaaagag ctactggcca 3600 tgcgctatgc gctgctcaag ttccgagttt acctcttggg cgaacagacc ttcgtcgtgt 3660 acaccgacca cgcgtcgttg cgaaccgcaa cgaagagtcc gcatctgtcc cagcgcatgg 3720 cgcgctggct ctcccttttc tccgaataca actttgttgt tcactacaag ccaggcaaga 3780 cgaacattct tgccgatgct ctctcgcgtc ggccagatta cgctcaactt ggccgccacg 3840 cgattgggga cgaagacgac gacgagtgcg ccgtgtgttc tgctgaagat gtcactgcga 3900 tggaagtcgc agcgaccagt tcgttgcgcg acgcgatctc ggccgcgtac gcgtcggatg 3960 cggcgtgctc cgagctgatc tcgtacctac atgatctgtc ggagccagcg cggcgccgac 4020 tgtccccgcg ggcccgatcc cgattgagcc gcttccgctt acacgaaggt ttgctgactt 4080 acagtgtgga caacgaagac tcaccacgca tcgtcgtccc gctggacgac gatcttcgcg 4140 cccgattgat tcacgagttt cacgattctc ccagtggtgg ccatcttgga cgcgaaaaga 4200 ccttcgcgtc cctctctcgc gattactact ggccgcacat gtacaagtgg gtgcgtaagt 4260 gggttcgctc atgcgaagcg tgccagcgcg tgaagccttc cccgtcgaag caagcaccgc 4320 ttcgaccccg ccaggtggcc tcggagccgt ggtcctccgt cagtatggat ttcgttttcg 4380 gccttccccg cgacgcccaa ggtcgcactg gcatactcgt cttcgtcgat cgattcagca 4440 agatggtcca tcttgctcca gtcgccgcta cggtcaccgc caagcagtct gcggcgacgt 4500 ttctggatct tgtttatcgc catcacggct tgccaacatc gatcgtttcc gatcgcgatc 4560 cccgcttcac ctcagctttc tggtcagaga ttttccggct tgtcgggacg cggttgaaga 4620 tgtccaccgc gtcgcatccg gaaacggacg gccagacgga gcgtgcgaac agggtcgttg 4680 aggatgtgtt gcggagcttc gccacgtcat tcacgtcctg gagctcgttc cttcccatgg 4740 tcgagttcgc gatcaacaat gcggttcacg catcgacggg gctcactcca ttctacgtga 4800 actacggacg ccatccccgc gtccctgccc tccttggcat ggatcgtcgg tccccagtcg 4860 aatcggacgc ggtcacgccc gcgccagtac ccccaccgaa cgagacggac gcctccgatg 4920 ttgccccatc cgcgattccc gctgacgata gtcgtgagca agctcacgac gtcacctccg 4980 cgattttgaa tgctgtcacc acccggcgtg gagccgcatc tgctgcgcca agtgtgcgca 5040 cgcgtggtgc cacggaggca acaccatctt cactgaccac ctggacgccc aggacgctga 5100 ttaacccgcg tcagcatcgc cgcgcagttg agtaccatgc cgcgacaggc tcagccgctt 5160 cacccgagcc tccgcccgca aacttcaatc cgaaccctga atcgctaccg cgtgatgccg 5220 cggccgctct tgcattcgtc cagcgtcgcg agtcggtaat tcgctatgtg cgcgacgcca 5280 tcgctatggc ggtggatcgc cagaaggaga acgcagacag gcgtggtcgc aagaatctcg 5340 cgacgtttgc agtgggcgat cgtgttttgc tatccaccga cggcattaca cccacttctg 5400 tgacgaactt gggcgccaac aagctggcgc cgcgatatat cggaccgttc aagatattga 5460 aggcattaga tgacgcgtat acacttcgac tacctacagc actacgcctc caccctacct 5520 tctacgttgg tcgcctccgc cgctatcacc cttcgtctat ccccagcgac gcggatggtt 5580 ccccgcgtcc ggacttcggc gatcatcccg aggctcgtcc tgacgtcgca cgcgatggcg 5640 cagctcttga ttctcccgct ccagatactc cacacgctga agcaaccgat ccagacgctg 5700 cgcggtcgca gcgtcttccc gccgtccgcg gtccaccctt tcagcgtgac ggtcccgctc 5760 ctcttgtcga tagcgcgggt aatcttcgtc atattgttga ccgtatcttg gaacacgagg 5820 accctcgtgc tgcgcccaac cttgctcata cgagtcacgg cgctgatcgc catgacgctg 5880 ccatccctcc gctccggcgc tacctcgctc ggtggctcgg ccccatgaag gatagttggg 5940 agcctcgcgc catccttctc gccgacgttc cggactgcgt ggcggagtac gaggctggtc 6000 tcgtaccggc ggccgatcgt cacgcgggcg cggccgtccg ccgcgcctag cctcgtcgag 6060 ggccctcaag taacgaccta tcacaccacg ctccacttcg gtaattgcag cagcttcaag 6120 aacacgaccc cattctgcgt cgtcgggtcg cgagacacca cgctcgcgac aacgctgaca 6180 cccatcttct cggtgtgcgg tacagcaccg gcggccttgg tcactggcca acctgcaaac 6240 ttgagcggcc agcgcgctga cggacagccg cgagtgcgcc gcctcgcgct cgagcagcat 6300 gcgctcgaac gcctcgcctc cttccttatt ccagcggagc acgaacgaaa tccacgctcg 6360 atccagggac tggagtgtca cggtggctgt cgccgtgacg ggtttgcctc ttgtcgcgcg 6420 gaacctctca aacagccgtc tcatctcgtc atcactgcgg gcgttcacga aggcgctgca 6480 gtcgtgcagc gcccacctct ccagcgcctc cgcgtacgtg gtcgagtcgt cgtctcgctc 6540 gctcatcgat acccagttcg tcgcgccgta ccaaaaggaa aatgctgcgt gctttctctc 6600 tgaagtgggg gatgg 6615 // ID Copia-2_PSo-I repbase; DNA; PLN; 4601 BP. XX AC AAQY01000388; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PSo_; KW Copia-2_PSo-LTR; Copia-2_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4601 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000388; Positions 46736 42136. XX CC Positions [1959-2249] - Integrase core CC 'TCCAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 45..1424 FT /product="Copia-2_PSo-I_1p" FT /translation="MERTLRMVPRIVGMTVLKTKIVQVTHLRRHLRPRQRR FT GATGRARSRARLARTALSPTRARPTPTLTRRVRMRGGGSKRKRSSKKKRSS FT KKKKRSRSSRLDSPSLEVPKLTGADDYELWRTMIELKLKVQKLWSLVTEEV FT VLDSSWSSAKKRRWKERWLKAQAVIAGSLGPRLAGRYRRLSVSCDPVALFQ FT EIDKEYNAGSAAKNDILTKAAMFVRKLAKGERVDTYIDAIMQLQEDLVTLG FT HPLDDAELARLLLTNALEVFPDLSTELVGARMKARELEVGKVRGRLLAREQ FT EENMRAPAGGIVVRNASSDSGSRSVQSDSNPVYQFSSGHSHSSKNFDRHGG FT GHRQNQNRAHQSRRHSEKAAMQRRPCSKCGKLGHWYRDCWQKTSQDASNRP FT PSKGGQGSSARAGGQSGRRHDVTGPTALMATFGGAATKWPLTWLSGVLTVR FT RLPMSATISLTLCTY" FT CDS 2304..4601 FT /product="Copia-2_PSo-I_2p" FT /translation="MGSCGKVRALLHMTNLPDLLWGEAALHVVYTLNVTAT FT RVLDGLTPHEKLSGDSPDVSCLRTWGSLCYYHIASGARSKKKKLSSRMGTA FT ILVGYSPTTHVYKVLDLARGAVSTHRGGNLIFAEDFTVAREYVEKLLANAY FT NHGDHELPPRAPLVPMQMQIEDVVRLDSERESVLVQPGQSVAVEQPPAAIA FT APQPVGPVSTVEEAPGARGGVDVQTAPVDGLADSDTVARHRVSCFGRKRKR FT NSRLINFELHYVAHKLVKVLQCESISPTQSRLHSRDVPVPATYKQAIRSKF FT AAYWLAAIAEELESLRKHGVWQVVDRSAAGKSAVITNKWVFGIKKDENGFV FT KRFKARLVIHGFKQKFGENYNETFASVIRFDTISVAIYFAVQRRWSIFRYD FT VKTAFLHGKLTEEVFMELPQGNGSPGNREICKLIKSLYGLKQAPHVWNKTL FT HRHLVALGFTRLESNHGLYSLLEKGEIVMLLTVYVDDLLLMGESSRCEAIA FT RKLAATFELVELGPVKYLVGVEVSIDHEKNTVFFSQTNYVEEILRRFHMHG FT CHGAATPEATTMETASEGPAAPEPSDLPYREIVGAFQYLVSGSRPDIAHVV FT RRLGQYMACFGAVHYAQAKRVLRYLQATKHFGLSMVVTGSTHLDLLRVEAY FT SDADYANDKEDRQSVSGYVTMVNGSVVSYGSRKQGLNAQSTMDSEVMVHQK FT RLQRARAGISSPRCYVVDTVLAPMFVRSDVCSAMFVLTAATMFVACDEFAE FT PQYCSQNQRDASKGE" XX SQ Sequence 4601 BP; 1050 A; 1174 C; 1364 G; 1013 T; 0 other; ggttatgagc ccaaacaggg tctctagtcg gctccaggac tcgcatggag aggacgctca 60 gaatggtacc aagaatcgtc gggatgacag ttctgaagac gaagatcgtc caagtgactc 120 atctccgtcg tcacctgcgc cctcggcaac gtcgcggagc gacggggcga gctcgatctc 180 gagctcgtct agctcggact gctctgagtc cgactcgagc tcgtccaact ccgactctga 240 ctcggcgagt tcggatgagg ggggggggct ctaagcgaaa gcgctccagc aagaagaagc 300 gctcctcgaa gaagaagaag aggagtcgct cctctcggtt ggacagcccc agcctggaag 360 tccccaagct gactggcgcc gacgactacg agctttggcg cacaatgatc gagttaaaac 420 tcaaggttca aaagctgtgg tccctagtga ccgaggaagt ggtgctcgac agctcttgga 480 gctccgccaa gaagcgtcgc tggaaagagc gttggctcaa agcccaagct gttatcgctg 540 ggtcgcttgg cccccgattg gctggtcgtt acaggcgact gtcggtgagc tgcgaccctg 600 tggctctatt ccaggagatc gataaagagt acaatgcggg cagcgccgca aagaacgaca 660 tcctgaccaa ggccgcaatg tttgtgcgca agctggccaa gggggagcgc gtagacacct 720 acatcgacgc gatcatgcag ctacaagagg atctcgtgac gcttggccat ccgcttgatg 780 acgctgaact tgctcgacta ctccttacca atgcgcttga ggtattcccc gacctcagca 840 cggagctagt gggtgcaaga atgaaggcca gggagctcga ggttggtaaa gtgcgtgggc 900 ggcttttggc gcgagagcag gaagagaata tgcgtgctcc ggccggaggc atcgtggttc 960 gcaacgcttc gagtgattct ggttctcgca gtgtccagtc tgactcaaat ccagtatacc 1020 agttttcttc tgggcacagc cacagcagca agaatttcga tcgccatgga gggggtcatc 1080 ggcagaatca gaaccgagcg catcagagcc gacgccactc tgagaaggcc gccatgcaac 1140 gccggccgtg ctccaagtgc ggtaaacttg gtcactggta tcgcgactgc tggcagaaga 1200 caagccaaga tgcaagcaat cgtcctccga gcaaaggcgg tcaaggttcg tcggctcggg 1260 caggtgggca aagcggtaga cggcacgatg ttacggggcc gacggcgctg atggcaacct 1320 tcggcggtgc ggccacgaag tggcctctga cgtggttgag tggtgtcttg acagtgcggc 1380 gactgccaat gtctgcaacg atctctctca ctttgtgcac atattaacta taaggaacgg 1440 ccccgaaatg ctgtgtgcca atggcggcac ggtaagcatt aatcaagtcg gcagtgtgga 1500 gctcaggatc gtgaacgaag tcactggcag gcaggagacg cgcattctct ccgatgtgta 1560 ctatgtgccc gatgctcctg cgaacttact ctcgcagggc tacatgcaga cggagctcaa 1620 ctacttcgtc aagatgtccg ccgatcaatc ggtctgcttc ctgaccaaga aaggaacaag 1680 gctcaagttc gtcaaagtca atcggttgta tcgcatttgg tcggtgagag accaagtgcg 1740 agagcaagcc gttgtataca gcgctattgt gaccccgaag aagtcggtgc cgttggcggt 1800 gtggcacaca cgcgagtgcc acgactatcg tcgacatggg caagcagaag gtggtaagag 1860 gactacagat cagcacaagc ggagcggagg ctgcgccaac gtgtcttccc tgtatgcacg 1920 ggaaaaagct gcggatgtca tatcctgagc gacgacagca cgcacaacga ccgcttcaac 1980 gccttcaagt ggacgtctgc tgtgtgaacg agcccacact cgatgggtgt acctccttct 2040 tacttgtggt cgatgagttc agccgatgca aatggctctt cctgctaagg cagaagagtg 2100 aagcgaagaa ccacattgcg gcacttgtta atcgcctgca cgtcaaatat cgcgaacgga 2160 attggcgtgt ggaagaaatc cactcggatc aggtggcgaa tttgacaaca acgacattct 2220 cgacttctgt gctgaagagg gtatcgagct gacgacaacc aacgcgtaca ccccccaaga 2280 gaacggtatc gtcgagcgcg ccaatgggat cgtgcggcaa ggtccgtgca ctcctccaca 2340 tgaccaacct acccgatctg ctgtggggtg aagctgctct tcacgtcgtc tacacgttga 2400 atgtcacggc gacccgagtg ctcgatggtc tgacacccca cgagaaattg tctggtgatt 2460 cgcctgacgt gtcgtgccta agaacgtggg ggagtctctg ctactatcac atcgctagtg 2520 gagcgcggtc caagaagaaa aagctctcgt ccagaatggg cactgcgatt ttggtgggtt 2580 attccccaac gactcatgtc tataaggttt tagaccttgc gcgtggtgca gtctccactc 2640 atcgcggagg caatttgatt ttcgctgaag actttacggt ggctcgtgaa tacgtggaga 2700 aactgctagc caacgcctac aatcacggtg accatgagct cccgccgaga gcgccgctgg 2760 tcccaatgca gatgcagatt gaggacgttg ttcgattgga ttctgagcga gagagtgttc 2820 tcgtgcagcc tggccagtct gtcgctgtgg agcagccccc tgctgctatt gctgctcccc 2880 agcctgttgg tcctgtgtct actgtggagg aagcacctgg tgctcgtgga ggcgtagacg 2940 tgcagactgc tcctgttgat ggtcttgctg acagcgatac tgtggcgcga caccgagtct 3000 cgtgttttgg cagaaagcgt aagaggaact cgagactcat taattttgag ctccactatg 3060 ttgcgcacaa gctggttaaa gttttgcagt gtgaatctat ctcgccaacc cagtctcgac 3120 tgcattcaag agatgtacct gtgccagcga cgtataagca ggcaattcgg tcgaagtttg 3180 ctgcgtactg gttggccgct attgctgaag aactcgagtc gctgcgcaag catggtgtgt 3240 ggcaggttgt agatagaagt gctgctggaa aatctgctgt gatcacgaac aagtgggtct 3300 ttggaatcaa gaaggacgag aacggcttcg tcaagcgctt taaggctcgg ctcgtcatac 3360 atgggttcaa gcagaagttc ggcgaaaact acaacgagac gtttgcatca gtcattaggt 3420 tcgacacgat tagcgtcgcg atttatttcg ctgtccagcg ccggtggtcg attttccggt 3480 acgacgtcaa aacagccttc ttgcacggca agctcactga agaagtcttc atggaactgc 3540 ctcaaggcaa tggatcgcct ggaaataggg agatttgtaa gctgattaag tccctgtatg 3600 gactcaaaca ggctccccac gtctggaaca agacgctgca ccgacaccta gttgcactcg 3660 ggttcacgcg tctggagagt aatcatggcc tttactccct cctcgagaag ggggagattg 3720 tcatgctcct aactgtctat gtggatgacc tgctgctaat gggcgagagc agtcggtgtg 3780 aagctattgc tcggaagctg gctgcaacat ttgagctcgt ggagctcggt cccgtcaagt 3840 acctggttgg ggtggaagtc agcattgatc atgagaagaa cactgtcttc ttcagtcaga 3900 caaattacgt tgaagaaatc ctgcgacgat tccatatgca cggctgtcat ggtgctgcga 3960 cgcccgaggc aaccacgatg gaaactgcta gtgaaggccc agcggcacct gagccgagtg 4020 atctgccgta tcgcgagatt gtcggagcct tccagtatct cgtgtcgggg tcaaggcccg 4080 atattgcaca cgttgttcgt cggcttggac agtatatggc gtgcttcggt gctgtccact 4140 acgcgcaagc taaacgggta ctcaggtatc tgcaagccac caagcatttt ggtctcagta 4200 tggtggtgac tggttcaacc catttggatt tgttgcgcgt ggaagcttat agcgatgctg 4260 actatgccaa cgataaggaa gaccgccagt ccgtgagtgg gtatgtcacg atggtgaatg 4320 gcagtgtagt ctcctacggg tcacggaagc aagggctcaa tgcccagagc acgatggatt 4380 ccgaggtgat ggttcaccaa aagcggctgc aacgtgcaag agcaggcatt agctcaccgc 4440 gatgttacgt ggttgatact gtgctggcgc cgatgttcgt gcgctccgat gtttgcagcg 4500 cgatgttcgt gctcactgct gctacgatgt tcgtagcttg tgacgaattt gcagagccac 4560 agtattgctc gcagaatcag cgtgacgcga gcaaggggga g 4601 // ID Gypsy-31_PIT-I repbase; DNA; PLN; 11607 BP. XX AC AATU01001395; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_PIT_; KW Gypsy-31_PIT-LTR; Gypsy-31_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11607 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001395; Positions 29773 41379. XX CC Positions [7039-7518] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 4443..5423 FT /product="Gypsy-31_PIT-I_4p" FT /translation="MTLKDTGEELPLAYTVVQDAYMAQMAASIRLPPRGQA FT LVMANVVGDAADKTTVLVESTVGLSPTLCVARTLCTVENGQVLVEVCNASS FT DVNWVKKGSTVACVSVIPESAFGPPSPSVPTGAAVESTESQEARVSSASGN FT VELVELEKIESPEPTVPPDKEEKGEADFSQSKLTDEQIELFREELIRFDDL FT FVTSSMKPGRTDRLKFEIDTGDNKPIKQPPYRVSMAEGEVMEAEVQQYLDL FT GLIRPSNSPWASPVLMIRKPDGGIRFCIDYRKLNAVTVKDCYPMPLIDDIL FT DVLGGAQIFSTMDIASGYWNLPMDEGSVGQDGVHV" FT CDS 5932..7860 FT /product="Gypsy-31_PIT-I_2p" FT /translation="MKPPILAYPDGRRRFKLFVDSSRYAVGACLMQEADGR FT DRVVAYASKLLTGSQKNWINNQDGISEIECWGVVWATRKFRSYLDKREFDV FT YTDHRALTWVFSPGNRTSNAKLARWAMELSRLQFKVHHKPGTAMGHVDGLS FT RLPVGKVAALTMNDLLNPDDDDVGPSSVGEHSSPEADEEVEYDDRAAGDPA FT DGHVDDPGPVGLREDSVREEVGPVAPSPVDQFSLDREQFVSEQLKVPWIKA FT LVAFLLDGALPLHPYLRARVVRMGPRYSVQEGMLLRRVNLPARSGPARSVS FT VPVVPLTYVETVLHFCHKDVLSSHMGLTKTTEKVRRHAFWPGWAKDVEEYV FT RTCNECGGGKGPRPWRSGLMQRMPVADLTGPFLMLVVDAIGPLPLTGRGHR FT YILVFVDYFTRWAEAFAVERLDAVTFVDTMVNGVVARHGVPSRLLSDNGSN FT FTSEVAKSFYQTLGIKKLFGSAYHPQTQGLVERFNGTLIGMLRMHVSEAQT FT DWDLYLQRVLFAYRTSYHEALGDTPFFSLYGRDPALPLDVAFLNLGTKWKS FT DEVAQYRRELFRSLRDSRHLVERLLLKAQDRHEKRLERQVAVEFAVGDPVW FT VYQVFRTKRGEVRTKKLSFSWHGPYRVVEKVGDNTYRIAIPSHFD" FT CDS 10534..11544 FT /product="Gypsy-31_PIT-I_3p" FT /translation="MIELLAEATEWCVWLAGICWAFGWSVVRHPWTEMAWA FT AAVRHWSGLLWALSGAVGWMITKPLWCVVGRIVGAVLEFVIKWNGLCKTCI FT RRYRIFADYVRIAERTPAVRRWKLYEALFQTPMVVLEDEAESEGGLGRLAH FT RWLEAYHALRCVFLPDVLELSCKSTVKYWIGSSAECHRAMDHACCVFRAFA FT SLMGLFAYAGLYTAVYVYEFVEQILYGSCGVGALLLLENYVLAERHFGVDG FT GFAWNDDMVLASGLTVLLAVTSRLLRWGEASKGRRTPKQVAEDRYARWTKD FT LEEQEQAEHLSEAFWKADGCVGSQAKGAAAERNAGAPRWSPCPES" XX SQ Sequence 11607 BP; 2344 A; 2909 C; 3994 G; 2360 T; 0 other; cgtggtggag aagcagggta ttggtcttcg ttgtgaagaa gaaccgtcgg agacgtcgtg 60 gagtgtgatc ccgtagtgca aggaggtctg gtatcgagcc cggacgcata gggactggag 120 tgtgattttc ggcgcggaac tcctggtata gagcccaggg gcgcataagg gagtgtgaag 180 tttggagttt attcggcgcg gaattcctgg tatagagccc aggggcgcat aagggagtgt 240 gaagtttgga gtttattcgg cgcggaattc ctggtatcga gcccaggggc gcataaggta 300 gtattgggaa caagagtttg acgagggaag cattggagaa gagtgtcatg tcggtatacg 360 tggaagacga ctatgaagag gacctgaggc ggtccgctgc cagagaggcg gctgaagaag 420 gacagagtca gggagactct cagacggagg atgtaaacga ggaagatgag gaaaagaagg 480 ctcctgtggg agtgacaacc gctgctgatc ggaacgctct acgtaagagc acgcgcgacg 540 agctacgggc ggctggagaa ggccggttgg aggtgacggg tggagtcaaa gacgcggtca 600 aggtagaggg agaggtgaaa acggagccgg cgccaagaaa gtacggaggc ggtgtcgccg 660 ggcccggatg aggtacccct ggtgggggag ggcgctcctc ttggggacga ctaccaactt 720 gcctatgagc acggcagctg ggaagtgttc ggccagtacg aggaggacga accttccgtc 780 gagaattggg aaccggccaa gaagaagagc cccagtggat tcattccgca gtacactgga 840 accgaggagc gccgctggga ctggccggcg tttgactgga gctggacgtc caaggggttc 900 gcaccctcgg acaacacggt gttcgcgtac acggcgtccg tgccccagca gccttacgag 960 gctccgccgg tcgctgttaa gaagacggtc actgccaatc cggtggcccc ttacaggacc 1020 acgggaccgg gcgtgtctgg gacgggtact gctcggacgg ctactgctgc tacgggaggt 1080 cagagtaacg cggcgacccc gggacgcatc ctgctccgcc tggaatcccg taggactggt 1140 ccgcgccctg cttggacggg actagtaggg agcgcctcgg gcgtttccgc cgcgttcggc 1200 agtggtgccg cgaggtccgc aggcccctcc gcgtgctggt gttcgaacaa ccggtccggg 1260 cccctgcctg ggccgtcacg cctgccgagg cgtgacgact ggaccacgaa gatgtcacct 1320 gtgatgaagg tgctgccgat gttctactcg gacacggcta cggtggagaa ggcgcgcgac 1380 ttctgggagc tgttcgagga ccacactgac cggtagccag acagagagcg actgttggtt 1440 ttccgacaga agctgaaggg acgtgaggcc gaaagatggt ggagcaactc cagcatcaag 1500 tcgttcgcga cgctgaaggt gcgtttccac aaccggtttc tcagcaggac ggccgacgag 1560 ctctgggaga gactgtactc cactaagcgt gaacgcggcg agtcagtgga ggaatgggga 1620 gaccgagtca cagacctgtg cgactccctc gaatatccga acccttagat gcggtatcag 1680 ttgttttgtc gtggcctgaa gaacaagagg atgctggcta ctctagattc aagcccggct 1740 cgagatattc cggaggcgtg cgagtggcta atgtttaagg acatgcatcg tcctgtggag 1800 gaagacgacg aatttcctga cgagtcgcgg gcgaagcctg atagtcacac ggcgactgtg 1860 aacgctctaa cccagaagct ggacgacttc ctgttgcagc agctggaatg gcaacaccag 1920 gtgatggaag atttgcagtc cgtgccgccg gctgcggtgc ctactgtatc ggcggtggtg 1980 ccgagctccg gaggccacgg acagctccct cccgctggtg aagctggtcc gttcggaggt 2040 aatcgtgccc gtcgaggcat caagatggcg gaggattccc acacgcaaga aggagaacct 2100 gtctgtggcc gatgcgacta caagggtcac cctcgcgtga cgtgttcgcg ccaaacgatg 2160 acttgccgac ggtgtaccca gtacggtcat attgtggctg agggtgaggt gccgtatacc 2220 ggggcccgtg gcccgcctag cggtggaaac ggaggaggaa actcgacgat gcggtgtttc 2280 tactgccacc agatcggtca tagtgtctct cagtgtcccg agatcgctac tctgaaggga 2340 ttggccacga ctctgaaggc gtcgacggcc gaagcgtctc gtcaatgacg ggagcgtgag 2400 ggaggggaag aacgagtcac tccttcctct ggtcaagtgg atgactcgag tggcggccga 2460 gtgaaggatg gaggagacaa ggccgttaca gtggacgttg atgaagaggt agcagtgacg 2520 gggaaagagg acagcgcggt ggctgttgtg gtgcagaaag agaagaagac gaaggaaaag 2580 gagaaaaagt cgaaggaaaa gaggggtatc cggatagtag gcacggaaga agagggaaat 2640 cttgtcgtgg tgaacgacgc cccggaacgg tgtgagaagg tagccgtgga tctatccaag 2700 gtggcctcta cggtgggaac tacggtcgct atcgacggcg tcgcggttcc tgtggagact 2760 ctgcctgtgg ggcagaagac gcggccggaa cgaaggatgc gtgcggaagg ggtaagcagt 2820 gttgatggac ctagcgccgc tgtgatgtac aggaacaagg aggctgacat ggacaaggag 2880 gctgacacgg acgaggatgc caaaccgagc aaggagatcg agcaaactga aactggctgt 2940 atcttcacgg atgcggaact ggacgccatg gaggagtgtg agcccggcca agaggctacg 3000 gttttagctg gcgcgaaagt taatacggaa agtgaagaat atgacaagga gttagaggac 3060 cgtttgtacc cgttgaacga cgccgttgta ttggagcgtg tgcgactaaa cactgaggcc 3120 gtaagggacc cttcaatagc ggagttgtct cggttgttgg gcatctcgcc cgaggtcttg 3180 gagcgaactc gccgtgcctt ccctggaaag cttgcctcgc cggagcactg gaaagactgg 3240 ttccggaaga cgttggagac gaccgaggag gccaaacggg ccaaccgaga cttcaagacg 3300 cccgtagtaa atgctgtgcg tacggctatt actaccctag gaaggtcgtc accgtcggag 3360 aagctgaacg agggccgtga gaatccccga cgagtggagg atcgaggtga agacgacgtc 3420 tgtgccaaca tcctgttgcc cgccgtcgga acggatgctg gagaagaaga cggaagactt 3480 tcacgcccag gtgacagttc tccggtagtt gattatcgag gcgtacgtgc gacggggcgt 3540 accgtcgctt atcgctggtt gcaggagtga ttggaggctg gtagcgcgac ggcgtcgacg 3600 cccggcgaag acggacatac gactgacgga gttcagccta ggtgggacga ggcgcctact 3660 ccggactggc agcgtctccg tgctctcgcc gaaagggggg cagctggacc tactaagagc 3720 ggggtactgt ggggacgttt agaggcatcc ctcagagcgt acttggaggc ggaaggagct 3780 ctcgtctgga ccaagctcct ccagcgggct aaaagggtga ggaattcgtc ggcacgacgc 3840 cgtgagcggc ggagaacggc ccggcggacg gatgtctcca cgcccttcga gccaacggct 3900 gggttgtgcg agctgttgtt ctatcccgag gacgaagacg acgcctccca ctacgtggag 3960 gtggtgcggc cgtcaccgag ggtcgttacg aaggtgccga agaccggctt ggtggaagta 4020 gttaccgtgg agctgcctgg tgggtttggc gtctcccacg atgacgtaag agccgatgtc 4080 catgtcgtgg tcgaggatgg ccggcgggtc gtgtgcgccg ttggaaactt tgaggcactc 4140 tcgagtgggt acattgagtg cttaccgtct cggatgctgg ccgacactgg tgcgactctg 4200 agtctcgtgg acagtcgagt attgaagcga ttgggccggt cccaggagac gctggagccg 4260 tacggcggcc aagtcaagag ctcgtcggga caccctgggg atggatcggt ctctcgctgc 4320 gactgggaac tgtggaggtc tcccttagtg tgctggtagc taacaagttg cacgtcgacg 4380 ccattttggg ggtggacgcc ttgggtgctt ttggggcggt gatcgatgtc gccgaacgaa 4440 ggatgacgct caaggatacc ggtgaggagc taccgctcgc gtacacggtg gtgcaggacg 4500 cctacatggc tcagatggcc gcctcgatac gcctgcctcc gcgaggccaa gctctagtga 4560 tggccaacgt cgtcggcgac gctgctgaca agactacggt cctggtggag agcaccgttg 4620 gtctctcgcc tactctgtgt gtcgcgcgga ccttgtgcac ggtggaaaac ggccaggtcc 4680 tagtcgaggt gtgcaatgct tcgtccgacg tgaattgggt caagaagggc tccacggtcg 4740 cttgcgtgtc cgtgattcct gagtcggcgt ttggacctcc ctcgccttcc gtgcctaccg 4800 gcgcggcagt cgagtcgacg gagtcccaag aagcgagagt ttcgtcggcc tcggggaacg 4860 ttgagttagt ggagctcgag aagatcgaga gccccgagcc gacggtgccg cccgacaagg 4920 aagagaaggg cgaggcggat ttctcacaat ccaagttgac ggacgaacag attgaactgt 4980 tccgcgagga gctgatccgc ttcgacgact tattcgtcac gtcgtccatg aaacctggga 5040 ggacagaccg actcaagttt gagatagaca ccggggataa taagcccata aagcagccgc 5100 cctaccgtgt gtcgatggcg gaaggggaag tcatggaggc tgaagtgcag caatacctgg 5160 atctcgggtt gatcaggccg tcgaacagtc cttgggctag tcccgtcctg atgatccgga 5220 agccggacgg aggaattcgc ttttgtattg attaccggaa gcttaatgct gtgacggtga 5280 aggattgcta tcctatgcca ctgattgacg atatcctgga tgtattagga ggtgcgcaga 5340 tcttctctac gatggacatc gcgtccggtt actggaactt accgatggac gagggcagcg 5400 ttggccaaga cggcgttcac gtgtaagttt ggcctgtacg agtggctggt gatgccgttt 5460 ggactctgta atgcggtgcc ggcgtttgaa cggttgatgg agaccgtctt agtaaacctg 5520 aagtggcgag tgtgcttggt gtacctggat gactgtgtga tcttcagcaa ggatttccca 5580 acgcacctag tgcgtgtccg tcaggtgctg actcggttcc gtgaggcggg attcaagctc 5640 aagatgaaga agtgtcattg ggggcggagt caggtggcat tcttgggtca cattgtgacg 5700 tcggccggca ttctgccgaa ccctgagaaa gtgaaagcgg tgatgaacat tcggtcgccg 5760 agggacctgc acgagattcg gtcgttcttg ggcctgacga gctatttccg gaggtacatc 5820 cctggatatg cggcgatatc ggcgcctctg gagagactga aagcgaagga tgctccgttc 5880 gagtgaaacg aggactgcga ggcttcgttt cggcagctaa agagagctct tatgaagcct 5940 cctatcctgg cctatccgga cggccggagg cgattcaagt tgtttgtgga ctcctcccgg 6000 tacgccgtcg gtgcttgtct gatgcaggaa gctgatggcc gtgaccgtgt agtggcttac 6060 gccagcaagt tgttgaccgg ctcgcagaag aattggatta acaaccagga tgggatttcg 6120 gagattgagt gctggggcgt cgtctgggcg acgcgtaagt ttcggagtta tctcgacaag 6180 cgcgagttcg acgtgtacac ggaccaccga gcgctaacgt gggtcttcag tcccggcaat 6240 cggacttcga acgctaaact ggcccggtgg gccatggagc tgtcgaggct gcagttcaag 6300 gtacaccata agcccggtac ggctatgggg catgtggacg gtctctctcg gctaccagtg 6360 ggcaaagtgg cggcgctgac tatgaacgac ctactgaatc cggacgacga cgacgtgggt 6420 ccgtcttcag tcggggagca ttcgagtccc gaggcggacg aagaagtgga atacgacgac 6480 agagctgctg gcgacccggc cgatgggcac gttgacgacc ctgggccggt tggattacgc 6540 gaggattctg tcagagaaga agtcggaccg gtcgccccgt cacccgtcga ccagtttagc 6600 cttgatcgtg agcagttcgt gagtgaacag ttgaaggtgc cgtggatcaa ggcgctggtg 6660 gccttcttgc tggacggtgc gttgccactg catccgtacc tgcgagcgcg agtggtgcgg 6720 atgggacctc ggtactccgt ccaagaagga atgctcttgc gtcgcgtaaa cttgccggct 6780 cgatccggcc ctgctcgctc ggtctcagtc cccgtcgtgc ccttgacata cgtggaaacg 6840 gtgctgcatt tctgtcacaa ggacgtgctg tcgtctcaca tgggactgac gaagacgacg 6900 gagaaggtta gacggcatgc cttttggcca ggctgggcga aagatgttga agagtacgtc 6960 cgcacctgca acgagtgtgg cggcgggaaa ggaccgcgac cgtggcgttc tggactcatg 7020 cagcgcatgc cggtggctga cctgactggt ccgtttttaa tgctagtggt cgatgctata 7080 ggacctttgc ccttgactgg gagaggtcac cggtatatcc tcgtgttcgt agactacttc 7140 acgcggtggg cggaagcctt tgcggtagaa cgtttggatg cggtaacgtt cgtggatact 7200 atggtgaacg gagtggttgc tcggcacgga gtgccgtcgc gactgctgag cgacaacggg 7260 tcgaacttca cgtctgaggt ggccaagtca ttctatcaga ctttggggat caagaagctg 7320 tttgggtcag cgtaccatcc tcaaacgcaa ggtctagtcg aacggtttaa tggtaccttg 7380 attgggatgc tacggatgca tgtaagcgaa gctcagacgg actgggacct ctacctgcaa 7440 cgggtgttgt tcgcgtacag gacgtcgtat cacgaggctc tcggtgacac acctttcttc 7500 tcactatacg gacgtgaccc ggcgttgccg ctggatgtgg cgttcctgaa cttgggcacc 7560 aagtggaaga gcgacgaagt ggcccaatat aggcgtgagc tgttccgatc cttgcgcgac 7620 tccagacacc tcgtggagcg actgttgctg aaggcgcagg accgtcatga aaagagactg 7680 gagcgtcaag tcgctgtgga gtttgcagta ggtgacccgg tctgggttta tcaggtattc 7740 aggaccaagc gaggagaagt gcggacgaag aaattgtcgt tctcatggca cgggccttac 7800 cgagtagttg agaaggtggg cgacaacact tacaggattg cgataccctc gcacttcgac 7860 tgagtcgtgc ctgtgaacgt caaccgactc aagaagttcc gaggacggtg gactcggccc 7920 ttcatggatg aagtgcccga gggtttggag gagaacggtg acgagatcga agacggtccg 7980 ctagacgagg ctgatctgcc tgcttccagt ttctcggaga ggttgaccgt cggaattggg 8040 gacactgcgc tgacaggagt cactgctcct ctactggagg tggtggccaa acgtgtggtt 8100 agccgtggca tcgagtattt ggcgctggcc gctaactttg agacgttctg gttgccgagg 8160 gcggcactgt cgcctgagta cgagtcgctg atctcggctt tcgaacaagc cgaacggaag 8220 aagcagcggt tacccgagtt aagacggagc tctcgcctgg cggatgcgaa cgcggaggtc 8280 ggagatgacg atttactgat ggagtagcct gtgtccgtga ataagtgtct gtggtgtcag 8340 gattggatga atttcgataa gtggattggg taccaggact cttacgcgga cagaccaggt 8400 gtggagttta tattacatgt ttaaatcgga aaagagaaac gatggaacga gctgacaaag 8460 agaacaaaag aaagattaac gaaagcaagt gtattaggga aggaattacg agtacggacg 8520 ggaggcacta cgctacggta cgacgccgag cgcgtgttgg cggtggttac ttggtcttct 8580 tggtggccgc ggcggccttc ttagcctccc cgtcgcccga agacttcttg gaggacgtca 8640 cgcccgaacc gtggctgcgg tcaaccgacg acgcgtcgct gttggacttg gaggtggcct 8700 tgctctccgt gatctcgccg tcttccgctt cctcttcatc gccggctgcc tcttcgcggt 8760 cttcggcctc ttcttcgtcg tcttcggcgt cgtcggcggc gtcgtcggct tcatcgacct 8820 tgtcttcctc gtcctcgtcg acgtcggagc cggaaaccgt gagcgagggc cgggctggaa 8880 gaggcgcaga aggaagcaag gccgaatagc tgtcgtcgtc ttcgccttcg aagtcggagt 8940 cgtcgtcccc tcgctcggtc acgtcgtaag gcttgacgtc gtccagcgct tcatacgtac 9000 cgtccaattg ctgctgcaca atgttggtct gcacctcgcg gagcgaccga tccgagagga 9060 gccgcttcca gacgccgcta gtcttgttac caacccaagc agggttggga ggcgaccggc 9120 tggcaacgtt catggcgatg cggcccagag cgacgtccga gaggcgtagg tggggcttcc 9180 gagtgatgtc cccagcctgg gtctgctcca gcagctccgg aacggaactg tagccgtctt 9240 cgtcgatgga gaacggatcg agagcgcggg cgatggtccg gtcgtagaga gccctatcct 9300 tcttgtagag cgtcgctagg tcgacttggg cggcttgagt cttggccgct accgagtgag 9360 cgaccgcctt gcccccgtac cacatcaggg tatcgtgggc cttgtcctcc agctgggcca 9420 ggaagctgta gtagccgaac acctcgatgt tcgcgctaat gaaccgcaaa cgggcctgca 9480 cggcgacgga catcttcttg cggcgtgcgt cggagttgcc ggtgggtgcg tagagggcgc 9540 agatgaagaa cgtagcgcgg tgcttcatcc agaagcgtca gtgcagaaga tgaagcagcg 9600 gatgctcttg cgggtcgtac caggctcgct gcccggacca cggatacgcc agccggaatg 9660 gagtcttccc tcgtcctgcc gcctccttga taaggcgatc cacgtcacga cggatcgcgg 9720 ccggcacgtc gtcggggagc tcgagggaat acttcaggga gttcgcggtg gtgcgtcgct 9780 tcttggccgg acgcttcgac tgggccttgt tgcgcggggc tgggcgcttg atggtcgtgt 9840 cgggctccgg cgcaaagaga gcatgagtcg ggggctgtcc gtcttcgaag gagccgggcg 9900 gcggcaacag cgtcacgacc tccgtcagcg tggccggtag ggagtcgtca tccgcgataa 9960 gggcgagggc gagggcgtcg actgcctgca gccccgagga ggcctcgttg acggccaggt 10020 gatctcggag ctcggcgtag aagtccactt gggcgcgcag gacattgtcc tcctcggctt 10080 gcccttgctg tcgaggcggg cgcggagacg gcggacgacg acatccttgc tggattcctt 10140 ggtcctggcc atggttgaag gcgggaagaa ctgcggcggc gtgaggagaa ggaaacgaat 10200 gcggagatgc gagaaagact ggatcttacc gctaggctga tggttcttga cctagtcagg 10260 gaccgtcaat ggttcagtga tacgccagat gcgctggtgg gggagacggt ttgtcccccg 10320 tgatcgaccg tttgtgacga gggcccggca cggtcccaga tccgattacg agggattgtg 10380 ggttacggcg tggactcgcc ccagcgccga gaagtgacgg tgatggagtt cttttaacga 10440 tgattgatgg ctcctgccta tctggaccgg gcctagcgct ggtacgcacg actactcaaa 10500 gatcggactc cctgcgttcg gggctgcgct acgatgattg agttgctcgc tgaggctacg 10560 gagtggtgcg tctggcttgc cgggatctgc tgggcgtttg ggtggagcgt cgtgcgtcat 10620 ccgtggacag agatggcgtg ggcggcagcc gtccgccact ggtctggatt gctctgggcc 10680 ctgagcggcg ccgtcggctg gatgatcacc aagccgttgt ggtgtgtggt ggggcggatc 10740 gtcggcgctg tattggaatt tgtgatcaag tggaacgggc tgtgtaagac ttgcatccgg 10800 cgctaccgga tctttgccga ctacgtgagg attgcggaaa ggactccggc agtgcgtcgc 10860 tggaagctgt acgaggcgtt attccagacg ccgatggtgg tgctagagga cgaggcggaa 10920 agcgagggcg ggttgggacg tcttgcccac cgctggctgg aggcctatca cgccttgagg 10980 tgcgtgttcc tacccgacgt gctcgagttg agctgcaagt ctacagtgaa gtattggatt 11040 ggctccagcg cggagtgtca ccgagcaatg gaccatgcgt gctgtgtttt ccgcgctttc 11100 gcgtcactca tgggattgtt tgcctacgcc ggcctgtaca cggccgtcta cgtgtacgag 11160 tttgtggaac aaattctcta tggaagctgc ggcgtcgggg cgctactact gctggagaac 11220 tacgtactgg cggagaggca ttttggtgtc gacggcggat tcgcctggaa cgacgatatg 11280 gtgcttgcca gtggtttgac cgttttgcta gccgttacta gccgcctact gcgatggggc 11340 gaggcctcca agggccgacg cacgcctaag caagtcgctg aggacagata cgcccggtgg 11400 acgaaggacc ttgaggagca ggagcaggcc gagcacctca gcgaagcgtt ctggaaggcc 11460 gacggctgtg tggggtccca agccaaaggt gcggcggctg agcgaaatgc gggcgcgccg 11520 agatggtcac cgtgcccgga aagctgatca aggcccgacg ggtgctcgac gagggcgtca 11580 agcttcagtc ggggagggta tcacgag 11607 // ID Copia-5_PSo-I repbase; DNA; PLN; 5264 BP. XX AC AAQY01000043; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PSo_; KW Copia-5_PSo-LTR; Copia-5_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5264 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000043; Positions 37826 32563. XX CC Positions [2097-2300] - Integrase core CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 545..1834 FT /product="Copia-5_PSo-I_1p" FT /translation="MVSESWLCVEVPSQLPSEYWASSISMTKEDFTVDKVE FT GALRRVFGDKSKKDVGLMDKTQVTHINNVRAKVVGQKRKPASTEGDRSCFY FT CFEAGHFKSDCPTKVADRDPNRQGGPLFRTDIKTAPGAKKAKKAAINTLKA FT VVAEGQKKLGKDDKTTLEKSQEDQLMDDINSLDPEKQDEGKSAETPPLKDM FT EEFEAMVRKFHSSYFSYLRNLKLTDDMWVVDTGAGRGITSDRSWFTGSLKP FT DQSHVFTYVNDTVSHSALKGSINLNVLNPEGYLSALKLTEISYDRKCDSNL FT LSAYYLAKQGYRHIQSKSGDFLFCIGNNFKLLFAAVAIGEVYYLPNVKPVR FT TSVFSVQTHKYGNILKEWHLRLGHVGKERLIRTLSNEKIVGLPKILYSELK FT KVHFFCKTCAHMKDRRMSYKNMVGAKAAEPLHTLNW" FT CDS 2148..3752 FT /product="Copia-5_PSo-I_2p" FT /translation="MMAGVRCALRWANMPAKWWPEALNYIVDVTNRLPMAR FT LGMKTPYELLHRMKPNGLALRIWGTTYYAHVPKTKRTDPKLGDRAIECKLL FT GLTPKYKGYRLLDVKANKYLICRDVKFSSTSTEAMIQRSFPTEDSSVDLEE FT EKVIQNLGKRPRTDVDAEATTEVEASTSASATRPPTSRIEGAENGVSSDRR FT GSKRKRKRNVRLTHYVTQLNNVTTGKKRIPIPRYIKEARASEYAAQWECAI FT KTEFEALLKNGTWKLVPLPEGRRALGCHWVFDVKYHSDGTVDRFKARLVVQ FT GNPQLYGIDYQEVFAPVARYESLRLLLALSTVLDLHLHQMDVSTAFLNGVL FT SESIYMRQPMGFHNGSGLVCKLEKSLYGLKQAPRIWYEVINAFLKYLGFSR FT CKKEHCLYLKRWEVQGVTHTLIVCDYVDDLTIAGSHLSSINDLKAKLSTKF FT TMKDLGELHHLLKMEIQRDLKRKTLRLSQQKYIQDLLEKFQMRDCNTEPTP FT QAKSVVLEKDTNMTPEQIAAQPFDYRGLTGSLMYLVRDT" XX SQ Sequence 5264 BP; 1604 A; 1089 C; 1337 G; 1234 T; 0 other; tttcaagtac tatgacggct accgatgcta agactggcgg cggtctggag cgcttcaatg 60 gcaagtccta caccatgtgg aaggacaagc tcctgacgca cgtcaactcg ttggaccata 120 agtaccagac gaagctgctt gagaagaggc agcctgaagc gaaggtgctc atggccgact 180 tcttgcggag taatccggag aagccagcag cgccgaccac cgaaacctcc gagcaaaagg 240 cgcttgagat gaggtgggac gtgacgcact ggaagagagg aaggggcgac ctgcagaacc 300 tgctcaatca ggctctgccc aatttctttc tgtcgacact gccggacatg gtgtcctcca 360 tggacccatg tgaggtgatc cggccgctcg aaaaagattt tggccaaggt gatgcggctg 420 gtctgattta gttgacacgg tctttgtata agttgacagg cgtgacttaa ggaccctata 480 tgcgcaactt aagaaggcaa ggaatgagat caacaggaag actcggaagc tatttaacca 540 aggcatggtg tccgagtcct ggctttgcgt cgaagttccg tcgcaactgc caagcgagta 600 ctgggcgtcc tccatctcga tgaccaagga ggacttcacg gtggacaagg tggagggggc 660 tttgcgccgc gtcttcggcg acaagtcaaa gaaggacgtg ggccttatgg acaaaactca 720 ggtaacccac atcaacaacg tccgagccaa ggtggttgga cagaaaagaa agcccgccag 780 taccgagggc gacagaagtt gtttctattg tttcgaagcg ggacacttca agtcggactg 840 ccccacgaaa gtggccgaca gggacccgaa ccgccaaggg ggacctcttt tccggacgga 900 cataaagacg gccccgggcg ctaagaaggc caagaaggca gcgatcaaca ctctcaaagc 960 ggtggtggct gaaggacaaa agaagctcgg caaggacgat aagacgacgc tcgagaagag 1020 ccaggaggac caattgatgg atgacatcaa cagcctggac cccgagaagc aggacgaagg 1080 caagtcggct gagacgccgc cactaaaaga catggaagaa ttcgaggcga tggtacgtaa 1140 atttcattcg tcatatttta gttatttacg gaacctaaag ttaacggatg atatgtgggt 1200 cgttgacact ggtgcaggcc gaggaataac atcagaccga agctggttca cgggaagcct 1260 gaagcccgac caaagtcacg tcttcactta cgtcaatgac accgtttcgc atagtgcact 1320 taagggatca ataaatctaa atgtgttgaa ccctgaagga tatttgagtg cgttaaagtt 1380 aacggaaatt tcatatgacc ggaaatgtga cagtaattta ctaagtgcat actatttggc 1440 taagcaaggt tacaggcaca tccagtcaaa atccggagat ttcctctttt gcataggaaa 1500 taactttaag ttactgtttg cagcagtagc tataggtgaa gtttattact taccgaacgt 1560 taaacccgta aggacgagtg tgtttagtgt ccaaacccac aaatatggca atatcctgaa 1620 agaatggcac ttgaggctcg gccatgttgg taaagaacga ttaattcgaa cactaagtaa 1680 cgagaaaatt gttgggctac caaaaatact ttactctgaa ctgaagaagg ttcatttctt 1740 ttgtaagaca tgcgcccaca tgaaagatag aagaatgtcc tataagaaca tggtgggagc 1800 caaggctgct gagccactcc atacactcaa ctggtaaatt acgggtgaat ggcttatatg 1860 gctcgtttgg ctatcactat gccctgtccg ttgtagatga cgctacctct tataagtggt 1920 actttgtggt aaaatccctg aaagaagttc ccggcaaaat tcgggacttg ctgaagaatt 1980 tgtcagtaca atttacattt aaggttaaga gaattagaac cgacggtggt tctgaatttc 2040 taaattcaga ggtgtctaaa ttgtgttcta aactcggttt agactttcaa agttgaaatg 2100 tagagtcaca agaagagaat gggagtgcag aaagagtgca ccagacgatg atggctggtg 2160 ttcgctgtgc actcagatgg gccaatatgc cggctaagtg gtggcctgaa gccttaaact 2220 atattgtaga tgtcaccaac cgcctaccaa tggccagact ggggatgaag accccgtatg 2280 aattactgca tcgtatgaag ccaaatggct tggcactcag aatttggggc acaacatact 2340 atgcacatgt acccaaaaca aagcgaacag acccaaaact cggtgatcga gcaatcgagt 2400 gtaagctttt ggggctgaca cccaaatata aggggtatcg gctgctagac gtcaaggcaa 2460 ataagtacct aatctgtcgc gacgttaaat ttagctcaac aagtacagag gcaatgatac 2520 aaaggtcgtt ccctactgaa gacagtagcg tggatctgga agaggaaaag gtcatacaga 2580 atttaggtaa gcgacctaga acagacgttg atgctgaagc gaccaccgaa gttgaagcct 2640 caacctcagc atctgccacg cgaccaccga catcccgaat agagggtgcg gaaaatgggg 2700 tcagtagtga cagacgaggg tctaagagga aaagaaagcg taacgtcaga ctgacacatt 2760 atgtcactca gttaaataat gtaacaactg gtaagaaacg tattcccatt ccgcgatata 2820 ttaaggaggc gcgggctagc gaatatgccg cgcagtggga gtgcgcaata aagacagagt 2880 ttgaggcctt actaaagaac ggcacatgga agttagtgcc tctgccagaa gggcgacgag 2940 cactcggttg tcactgggtg ttcgacgtaa agtaccattc tgacggtaca gttgaccgat 3000 ttaaagcacg gttggtagtc caagggaacc cccagctgta cggcattgac taccaggaag 3060 tttttgcccc agtagctcgg tatgagtctc tgcggctttt gctcgcacta tcgacagttc 3120 tagatctaca cctgcatcaa atggacgtct ctactgcatt cctaaatggt gtactaagcg 3180 aaagtattta catgaggcag ccaatgggat tccataatgg atccgggctt gtctgtaagc 3240 ttgagaaaag tctgtacggc ctaaaacagg ccccacgaat ttggtatgaa gtaataaatg 3300 cattcctaaa atatttaggc ttttccagat gcaagaaaga acattgcttg tatctgaaaa 3360 ggtgggaggt tcaaggagtc acacacacgc taattgtgtg cgactatgtg gacgacctta 3420 cgatcgctgg ctcacacttg agctcgatca atgatctgaa agctaagttg tctactaagt 3480 ttactatgaa agatttaggc gagttgcacc atttgttaaa aatggagatc caaagagatc 3540 taaaaaggaa aacactgcgt ctgtcgcaac aaaagtacat tcaggacctt ttggaaaagt 3600 ttcagatgag ggactgtaat acagaaccga caccacaagc taaaagtgtg gttttagaga 3660 aggacactaa tatgacaccc gaacagatag cggctcagcc gtttgattac cgaggtctga 3720 ctggctcatt aatgtattta gtaagagaca cttgacctga tatagcaaac gctgtaagag 3780 agttgagcaa gtcttgctat aattgagcaa gtcttgctat aataagaccc attggagagc 3840 ggctcagaga gtactaaagt acttgaaagg aacgtcgaag tacggcttag agtacaatgg 3900 aaatagtaat attaaggtag agctaaacac agacgcgagc ttcgcgaatg caaatgaaca 3960 aaggaaatca attacaggat atgtatcaat acttgctggt gcatgcatta cttggaagag 4020 tattaagcaa gattgtatta gtctcagcac agcggaaccg gaattagtag ccgcaagtga 4080 agtgtaagag aggcaatgtg gttacgacta ctattgaatg agttgggtta cggccaagca 4140 cggccaacac agtgttggtg cgatagcact gccacaattt gtataataaa aatcccacgc 4200 agtcatttgt caacaaaaca tattgatatc aggcatctct atgcccgcga taagcatgaa 4260 gagacaatta tcagtattac tttgtaatac caacgatatg atagcagatg cactcacaaa 4320 gccactgact caaagtcaat ttgagaacct tcgcgcgatg atgggcgtaa agaattttga 4380 ggtgtaagct taccgataaa ctacaccgcg agaaataaaa tactttgcac cacaaataat 4440 tgttttcaga cacaagaagg tgggactttg tcccaaaggc aatttttgat aagacacaaa 4500 taaagaaaac tattcgggaa gtttttcaac gtaagaactg caaaaagtac aaaaggttga 4560 ttaaagttaa cactaaaggc aaagatttac aacaaagtta agattaaagg tcagtttaag 4620 ggctaaaacc tcacttttag gtggaaccta accctaacgg tggactcctt gtcggtctgg 4680 gctgcaagcc ccacactctt gagtacattt tactcaactt taagttaatt tttagtctct 4740 gactctctca tctgtcgccg gcggaaaagc gcattgatca tagactggat gaccgcgagt 4800 agctcaaaac aatgagactt tccatccaca gggtccccag ttgggctgtt ggctgcgtgt 4860 taacctccgg ggctctgtgg cctagatcac acaactctag ccagggggat gtgaatggct 4920 tgcggcatcc cctcttgcgg agtttgcgtc agaccagcac ttgtgcggca cagaggcaga 4980 agagagagtg agaagcaaag gcaaaaggcg gagggagctt tatgggaaag gtgttctctc 5040 caatatataa gataaagtat gaatcttagt ttgggctgat ctgatatgta ctgcttatga 5100 tataagtatc ttgggcaacc tgataattta attttgggta tgcgacacga aataatatga 5160 gaacggtgtt gaagtcgaat agtcgagagc gatctttcga gaggcgcgct ggcatcttta 5220 gtgggagtgt tgcgccatat atactaaggc attgtatgct atag 5264 // ID Gypsy-6_PIT-LTR repbase; DNA; PLN; 362 BP. XX AC AATU01002470; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PIT_; KW Gypsy-6_PIT-I; Gypsy-6_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-362 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002470; Positions 36069 36430. XX SQ Sequence 362 BP; 103 A; 68 C; 90 G; 101 T; 0 other; tgtaacgggg ttacatggtg tggagcacac aggggtacga agtacccgga gagttaacaa 60 actctcagta cataagttgg agagttaaca aggtatctca gtacgttggc tgaaagccac 120 acgttatgca tttgattagg tttaactatg ctagatagtt aaagagatac atttacccct 180 aggcggcttg gccgcaataa tagtaaataa aacacttctg gttttgaagc ataaaagtta 240 aggtgttaac tttgagccct ggtcttgggc tgtaagtgtc ctttggataa ggaacttagt 300 attagtgact ctttgagtcg aacgtcttcc tctgacgcta aagctacggc agccccgctg 360 ca 362 // ID Helitron-N1_PPa repbase; DNA; PLN; 280 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous Helitron transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N1_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-280 RA Bao W. and Jurka J.; RT "Non-autonomous Helitron transposons from moss."; RL Repbase Reports 10(7), 1035-1035 (2010). XX DR [1] (Consensus) XX CC The 3-end ~34-bp is similar to those of Helitron2_PPa and CC Helitron3_PPa. XX SQ Sequence 280 BP; 93 A; 53 C; 53 G; 81 T; 0 other; tctcttatat aaaacaactc agggggataa accaacggga taaactagag gagacaaaaa 60 ccatctctaa ttggctgcat atctcattgt tttcatcaaa agtgaagcaa taactcaact 120 tttgatcaat cagagatcaa aatctgcatg ttgttgctgc agattgccga gagtagcact 180 gcaagatcac taggcatgga gcttagaagc tcccaatcgt aattattaat aaatattttc 240 atgatatttt tttgtggcca atggcacggg tttccactag 280 // ID Copia-1_PPa-LTR repbase; DNA; PLN; 138 BP. XX AC . XX DT 16-DEC-2009 (Rel. 15.04, Created) DT 16-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PPa-I; KW Copia-1_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-138 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 566-566 (2010). XX DR [1] (Consensus) XX SQ Sequence 138 BP; 37 A; 29 C; 21 G; 51 T; 0 other; tgttgaatgt cccatattat atgtaccaaa agctgtgact tatccagctc ttaactaaga 60 cactagaagt gccctctctt tggcttctgg cacattttgt ttgcaacaaa tgatgttatt 120 catcctattt ttgtaaca 138 // ID IMPALA repbase; DNA; PLN; 860 BP. XX AC S75106; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE transposase {impala-160 element, inverted repeats} [Fusarium DE oxysporum, F24, Transposon Mutant, 1280 nt]. XX KW Mariner/Tc1; DNA transposon; Transposable Element; KW DNA transposon IMPALA; IMPALA; Tc1/mariner superfamily; KW transposase. XX OS Fusarium oxysporum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; OC mitosporic Hypocreales; Fusarium; OC Fusarium oxysporum species complex. XX RN [1] RP 1-860 RA Langin T., Capy P. and Daboussi J.M.; RT "The transposable element impala, a fungal member of the RT Tc1-mariner superfamily."; RL Mol. Gen. Genet. entry [NCBI gibbsq 159940] from the original RL journal article. This sequence comes from Fig. 2 246(1), 19-28 RL (1995). XX DR GenBank; S75106; Positions 1 860. XX CC 28 bp terminal inverted repeats. XX SQ Sequence 860 BP; 214 A; 220 C; 199 G; 227 T; 0 other; cagtggggta caataagttt gaatacatct gcaggtatct cggtccggcc taacccgatc 60 gggaccgcgt tttcaatgcc gctctttctt cctcctccac acacacatca caacgcctga 120 caacgcctca cgatgcctcg aggcaaggaa cttacgcctt cattacggtc acgaatatgt 180 gaattaaaga agcagggcta ttcttatagt caaattcaca agcatttccc ctatatccct 240 cttgggacga ttaaaacgac gtgccgccgc gaggcacaac ttgggctgcc ttcggtcaca 300 ggtctcgtac gccgttagtg cctctcgttg gcaagctcaa cgccatcggc atctacgagc 360 tgtatagctt catcttgccc tggttccttc aatcaggcga tatctttatg catgataacg 420 cctctgtgca tacggcccgg atcgtcaagg ccctgttaga agagctaggg gttgacctga 480 tgacttggcc gccttattcg cctgacctga atcctataga gaatctgtgg gcgttgatga 540 aggcagagat atatcggtta catccggaac tgactcacac agaggataca gttgctacac 600 aacatgcctt ggtcttagct gcaatggagg cttgggataa tattgaagat agggtcttga 660 agaacctttg tgagactatg ccgaaccgtg ttactgctgt aattactgca gaaggttggt 720 atacaaagta ctgaagctgt tctaattgac cttgttaggt caaaattata atattacagc 780 agcagcaaaa cagctgcccg tttcggctag cctcgatcgt cggtacctct aggtgtattc 840 aaacttattg caccccactg 860 // ID CRYPTON-CN1 repbase; DNA; PLN; 4004 BP. XX AC AY248893; XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Cryptococcus neoformans transposon Crypton-Cn1. XX KW DNA transposon; Transposable Element; CRYPTON-CN1; crypton family; KW putative tyrosine recombinase. XX OS Cryptococcus sp. OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Tremellomycetes; Tremellomycetidae incertae sedis; Cryptococcus. XX RN [1] RP 1-4004 RA Goodwin J.T., Butler I.M. and Poulter M.T.; RT "Cryptons: a group of tyrosine-recombinase-encoding DNA RT transposons from fungi."; RL Microbiology 149(11), 3099-3109 (2003). XX DR Genbank; AY248893; Positions 1 4004. XX SQ Sequence 4004 BP; 1085 A; 942 C; 961 G; 1016 T; 0 other; caaaacacct aaaactgaac gtacttccca aaattaactt ggtgcaattg aattgttctc 60 tggaaccagg gacccgggac aaggcgagcc gcggggacat gtcctcatag tgggggtcgc 120 cgattttttt caaatgtccc caggaagcgt tccagtaaac tagaatttat acgacctgtt 180 gcatgttgca tcagttccag taaactacag attactggag ctttgctcaa cctgtcccgg 240 gttaatatct gtcgtaatgg aaatacggcc tcattagtct cggcgtcagc ccacgcatcc 300 aatgtcatta cagtaacctc atccatgata ctttctaaca tattagaaca acattgctca 360 tattatccat cgttcaactt tttttgactg ccaccacctt gcacaatgcc agctaccaga 420 cgcacaaagg ggcttgacgc attccaacct gctgacactc tcgatcctcg cacggctcac 480 acgatgcaag atatcgctgc tcttcgcaaa agtaatttga cattgaaaac agcacgacaa 540 tatgcaacca aaaataagca atggtatgcg tactgtgccc acatgaattt tcttacaaag 600 tgagccgcca tctcccaaag atgtatgtgt actagttgtt ggctgacgtg ttgctcttca 660 acctgaagag atactgtaac tccggcaaac gcagcgtcgt atctgtacaa ttgggtactt 720 aaacttcctc ctgaccatca ccgtaaatga tttccccaca ggctttgtag agcatacgtt 780 gatatacttc gcaggtaaga agcaggcgca catccttgta agagaagccc aaggtgggca 840 agtgccacaa actgtgcggg gtcaggagca aggtcagacg gcactgttta ttgaggaaga 900 cgaggaagtc gacgattcaa tgcttgcagg tattgatgag cctgccgacc cagacaccgt 960 tcaggacgag cgccagatgc ttctgaatgg tgtcaatgac ttgccggatt ttaaggaatt 1020 gcgtgagagt cttggatatc atggtgcagg tgagctatct cagcttcaga gcagggtggc 1080 tggtaacgag cctacagact cgagtcttga gcatctgctg cagtgcaacc aatctcttgc 1140 ttctgtcagg ctctatttgg ctgctcttgt cgacctttgg gagacccaaa ggcaggcggg 1200 aatgaacgcc tttccctcgc cgcgcacgaa agcaaccaac tctatcctca acgctctacg 1260 tcgtgtacgc aacgaacaaa gtatccttcg ttgtgatgat aaaggtgacg gtgagcttta 1320 tcctgccttt ccatgtaata agaatctaag ctgagcccgc cctccagatc tgttctacga 1380 tgggatagcg acgaccgaga acatgaaaaa gttgtttctc cattatctgc atcgggacag 1440 cgtcgaaggt ctgcgcgatc tcgctgcgca agccgtcggc atccatggac ttttacgtgc 1500 ggatgatcag ctaaggatta ccctatcgtc catgtccctc agactcttcg aggatgaggg 1560 acccacacct tgtcgtggtg tcgttttcgc cataagagag gggaagacga cacatgacgg 1620 tcagatccag tactcaactc tgttgaggaa caaggatgtg acccggtgcc ccgtctcttt 1680 ccttgttctg tatctgtttg cccggtgagc ggttttgttt ctgccgcctt atgaagttgc 1740 tgtccaaatg atctgatttg gtctacttag gttccatttc agtgaagagc cctttattaa 1800 ctcagatgtc tcttttccct ctttaaaaaa tcgccaggac tggtatcaca tcccactctt 1860 tgtgtcccgc caatccaacg cagttacgcg tctgaaatat gacgctttga acaagagtgt 1920 gcgaaaagca cttcaaagct gcaacatcca ttgtagagcg tccactcaca cgtctcgcaa 1980 atggggagcc cagcttgccg aagatggcgg cgcgcctgaa gaagatatca tgaggcaagg 2040 aagatggtgt acaaaggtga tggaaactgt ctacctcagt aaattccctc tcaaagcatt 2100 gagagccctt gcagggttcc caaaaaagaa aggttcttat taccttcctc gcgacatgga 2160 agtgcctcag gagcttatcg agagcgtctt cccatgggtt gatgctgcgt tgagtcatat 2220 tccgttacat gtggaaagtt aattaactga tgctgaatat gcagtgaggc tgagctcttc 2280 gaccccgatc gcttccaagg cgacaaagct ggtcgagcat tcatcaaact catggactgg 2340 tttcgctcgg tattaatcca agatgctccc tttattcgcc agctcgaacc tgacctcttt 2400 gtctggaaac accctgtctt ctccacaccc actttccttg cctttgaagc aagggcgcta 2460 gccgaagcgc aaagcgcgga agcacgcatg agcgaggatg caaggcaact tatccctgaa 2520 ctttccgatt atctctctac caacttcact gccttgttta aggccacata taacatcgac 2580 accacgttaa caggactagc tgcgtccgtt gccagcaatt cccaacttat acaggaagag 2640 cggcgtgctg agaaatatga tgcactgttg aatggtattg gagatgcatt ccatgcaatg 2700 gctcgccgcc aacacagcgg cagcatttca tctcgatcaa atggtgagca tgttgtcaca 2760 gatggtcatg gatggcgtga atgttagctg ataatatgtc agtcaacgcc caagagagcc 2820 aaacgaccag tgtacttgaa ggtcaacacc atggggggtt taacccatcc gcttcttcca 2880 actccgtcgc ttctcagccc aactccgcta gcgactctgg tgacctagtt caactcgaag 2940 cattggtcta caagatggat cgcgaggtag gagatgtact agaattatgg gatgagtaca 3000 tcgttggaag gaatggtcga ttacctgtca gggaaatgag tcaacgaaac gagtttaaaa 3060 agaacgaagc cgaaaaaaag atgttcaatc ggagaaaacc tatctatgag gccatcagag 3120 acctagctcg ggggatgaac atgggtgaga gggaagctgc ggggttaatt gaggagtata 3180 ggattaaaaa ctcgatgggg ctaaacaagc tgagcaatgt cgtcaaggaa gttgtcaaga 3240 acatgattgt gcatcagtct tatcgatatc gaacgttgta actgttttaa attgtaacca 3300 tatgatagtt gtacttacgt tcatgcacgt atgattgcct catccttccc atattatgtt 3360 cctgtggcta catataaagg taatcaaacg ggtaatcgaa ggaaaagctg gtgagaaaag 3420 aagtgatggg gaaggatgag aactcgggaa atgggtcaag acgggtcagc cgaagccctt 3480 ggccatccaa tatttctttt ggaaatgcga cgtaccatta tgcagaggaa agacaagagg 3540 tacaaatgca catagctcaa acatagctgc aagcgacatc agtatacagt agtatatatt 3600 ctgagttttt cacaaacgtt acagcctgaa cgaagttaca agtggtcgcg acgtgtggtc 3660 atcatgaacg aaatagcgat gtgatgtagt atatatgcat atgcatgcat tattgaagaa 3720 gatagagaag ctcaacaatc ataatggtcg tgcagtgcgt gcgtacagtg gtggaggatg 3780 tatgggttcg gcgcggactc cgtttacgac ttagtcaccg gacaaccccg ccaggacatg 3840 tcctggacag ggtatagggt agggtcttta aacggattgt ttacccgaaa ccccgtgaag 3900 tctcttacgg gtcatcacta tttataatta attatgcgac tttcgtaatt gattatctaa 3960 taaacattat gtaagagtcc aaccgataca cttgctctcg ggac 4004 // ID Gypsy11-LTR_VC repbase; DNA; PLN; 173 BP. XX AC scaffold_87; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11-VC; KW Gypsy11-I_VC; Gypsy11-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-173 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 139-139 (2008). XX DR Genome; scaffold_87; Positions 58739 58567. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 173 BP; 43 A; 50 C; 31 G; 49 T; 0 other; tgtaacgccg ctaaggcggc cctcggctca ccgggccaac ggtcatcgta ccaacggtac 60 attcaagaac tattcatagt ctttccaata ccaaacggta tttatcaata ccacctttta 120 tcgttggata attctcttcg taactgcttc gccaactgcc gagctttgtt aca 173 // ID Gypsy15-LTR_VC repbase; DNA; PLN; 389 BP. XX AC scaffold_97; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy15-VC; KW Gypsy15-I_VC; Gypsy15-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-389 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 143-143 (2008). XX DR Genome; scaffold_97; Positions 254988 254600. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 389 BP; 84 A; 105 C; 82 G; 118 T; 0 other; tgttgtggca cacttgcata ttaaccctcg gacctttccc caattctctg gcaccttgcc 60 gctgggcaat atcttcgctc ttacttggtt aaccattggg cactggccta tctctaattg 120 ggtgctggcc catctctaat cgggcacttg cctgtcttta tcacgcatga tactgggtta 180 tagcgctctt gctataatcg tgacacttgt cactggtaga cccacttggg ttatgattgc 240 accgattggt gataattcgt gttgacgact atatcctcgg accgtacaga cttctgtacg 300 ggtcatccaa acgcagaggc atttagcctc cctccattca ctaatcggta gttttcacta 360 ccacctaaac agtggaagtg gatacaaca 389 // ID Copia-29_PIT-I repbase; DNA; PLN; 4666 BP. XX AC AATU01000844; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-29_PIT_; KW Copia-29_PIT-LTR; Copia-29_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4666 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000844; Positions 23835 19170. XX CC Positions [1609-2127] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 370..4404 FT /product="Copia-29_PIT-I_1p" FT /translation="MRENFISLKYEDGQEMTTHLNNLKTLADKLARIGKPV FT DDQERVCQLLTSLPESWSHFKSVYFTQDRPLPWATMEGNVMAEFSRRQAQT FT APVVVQETAVPAVLKNEVYMMAEALLAARQSHLNSRRTQSHRSTPYPPRSS FT NGQTCFYCGKGGHQKQVCRLRLRHLQERGVPEEQQGSTGHAAVTVAPASPA FT ANAAERTEQLSPALEGEVWGLAAVAGYAAKTSADSVFIPWVIDSGCTQHMT FT SDRSLFEKFEAASGRNVRVATATMTPVEGVGTVLLTVQMNDGHNERVRLHK FT VLYVPALEMNLLSVYQAAQGGAKFDFHTRPGSVTMSLDHRQVTCRATNKLY FT VLHSARPAAAALAVRPELTLDLLHQRFGHTSKQILRKMASSKLASGMEFKP FT EQDNSPCDACELGTKRRATFKIKPRVDLDGCNNVVHSDIAGPVELPSIKLE FT RYVLLFVDGYSRYCTVRLLRKRSEMFQCFLEYKAAVETKHNRSLRRFVSDN FT GGEYLDGAFVKYCRDHGIQRETTIAYTPEQNGMAEVRFRILFNKVRTILIS FT SGSPKQLWGEAVLAMVYTYNRTLASGIGVTPYERWHGHPPDVSNLRTLGSL FT AYVYVASKTNAQGRAGAKRQKLDAKAVRGVFVGYAANQKGWKILDCNQGAI FT ISSVHVTFDESCSAAARDLKRQEFRKLASHHSMDFEYYSRTATSEVDLLFY FT SQRPTEEKPSANDIVLLEDFVAGFDMDSVNTSTTWPQLRAYASSSASWLQT FT LVGPQALTSESVHPIIRAVRKQKQAELLVALENLKYKESLCAAVAHGMGLD FT PATYREAMARPDAARWREATDAEIASLLRNKTWTLVKLPAGKRALACKWVF FT KRKFNSDGTLERYKARLVVIGCQQIKFIDFDDVFAPVVRLESLRVLLAIVC FT IEDLECDQMDIETAFLNGVLEEEVYMQLPQGLKVAGQEGLVCRLLKTLYGL FT KQAPRAWHKALVQYLTTAGFEALQCEACIFARSIGIKTQIVAIYVDDLVLI FT AKTRGEVAEMKAGIQKAFRAKDMGPVSYIVGIKVVRDRRQRKLWINQQLSA FT DSIVNRFNMQHAFATKVPSIPGKKLRKLNGADATGDVMSEMATKPFRQAVG FT SLMYLMIGSRPELAFSIQDVSRFLNAYAKPHWEAVKQIIKYVKGTTAHGLE FT FSGSDVRLSAYSDSDYAADEDERKSVSGYVTFIGNCAVTWSSRKQRIVAQS FT TAEAEYIALAHCTREVLFIRQLLSELGYKQEETSIFEDNQACIAIAENPTQ FT HSRTKHIDVRYHFIREHVRAKHIALKYVMSKENVADTFTKGLGKDHFGLLR FT GKLGVIEVNADAGERAVDEDREGKATSRGKNNK" XX SQ Sequence 4666 BP; 1221 A; 1167 C; 1259 G; 1019 T; 0 other; ataggttatc tgcccaagct ttctctgtgc tcaacgtgct accgttgagg tgtcgcggtc 60 atggtgaaat ggaactccga gaaaaacttc gacgggacca actacacggc atggaagacg 120 cgtgtacgag ccgtaatgta ggtcaacgat ctctgggaca tcgcagcgct acgtgaacgt 180 ccgccacgca gtgtctcatg ccatgacgaa gacaggtttt ggcaccgaga acgtagagca 240 aaagctttct tgctggaaac gctgtccgac gatcttgtgg taagtgttgg tgcaaagcgg 300 tacacctacc aagtgctaga gtacttagag caaacgtatg aggccaaaaa ctgggggaac 360 ctagtggcaa tgcgtgagaa cttcatatcg ctgaagtacg aagacggaca agaaatgact 420 acgcacctca acaatctaaa gactctagcc gacaaactag cccgcatagg aaaacccgtt 480 gatgaccaag aacgagtgtg ccaactcttg acaagtctac ccgagtcctg gtcccacttc 540 aaaagtgtat actttacaca agaccgccca ctgccatggg caacaatgga aggcaacgtt 600 atggccgaat tctcgagacg ccaagcccaa acggctccag tagttgttca agaaacggcc 660 gtccccgctg tcttgaaaaa cgaggtctac atgatggcgg aggccttact tgcagcacgc 720 cagagtcacc tcaattcgag acgcacgcaa tcccatcgat cgacgccata cccaccgcgg 780 tcgagtaacg ggcaaacatg cttctattgt ggcaaagggg ggcaccaaaa acaagtctgt 840 cggcttcgcc ttcgccacct ccaagaacgt ggtgttccgg aggagcaaca aggttctacc 900 ggacacgcag cggtaactgt ggcgcctgca agccccgccg ccaatgccgc cgagcggaca 960 gagcaactat ctccggcact cgaaggagaa gtatggggtc tggcggcagt cgcaggatat 1020 gctgcgaaaa caagcgcgga tagtgtgttt attccttggg tgatcgactc ggggtgtacc 1080 caacacatga cgtccgaccg gtctctcttt gagaagtttg aagcggcctc tggacgaaac 1140 gttcgcgtgg caacggctac aatgactcct gtagaagggg ttggtacagt gctgctcacg 1200 gtgcaaatga acgacggcca taacgaacga gtcaggctcc acaaagtcct ctacgtgccg 1260 gcgcttgaaa tgaacttact ctctgtgtac caagcggcgc aaggaggggc gaaatttgac 1320 tttcatacgc gaccgggttc cgtgacaatg tcacttgatc accgccaagt tacatgtcgc 1380 gctaccaata agctgtacgt cctgcattcg gcccgcccag cagcagcagc tctcgccgta 1440 agaccggagc tgacgctgga tctcctgcat caacggttcg ggcataccag caagcagatt 1500 cttcgcaaga tggcgtcttc taaattggcc agtggcatgg agttcaaacc ggagcaggat 1560 aattcaccat gtgatgcctg cgagctgggt acgaagcgcc gcgcgacgtt caaaataaag 1620 ccgcgagttg acctggatgg ctgcaataat gttgttcaca gcgacatcgc tggacctgtc 1680 gaattgccat caatcaagct cgagcgatat gtgttactct ttgtcgatgg ttattcgcga 1740 tactgcactg tgcggctgct gcgaaaacga tcggagatgt tccaatgctt cttggaatac 1800 aaggcggcag tagagacgaa gcacaatcga tcacttcgac gctttgtcag cgacaacggt 1860 ggcgagtatc tagatggtgc attcgtcaag tactgtcgtg accatgggat tcaacgcgaa 1920 accacaatcg cgtacacacc ggagcaaaac gggatggctg aagttcgctt ccgtattctg 1980 ttcaacaaag ttcggacgat tctaatctcc agtggatcac cgaagcagct ttggggagaa 2040 gcagttctgg cgatggtcta cacatacaat cggactctcg cctctggtat tggtgtgact 2100 ccatacgaac gatggcacgg tcatcctcct gatgtcagca accttcggac tttaggctct 2160 ctcgcatacg tttacgtggc gtccaagaca aatgcacagg gacgtgccgg tgccaagagg 2220 cagaagcttg acgcaaaagc tgttcgaggc gtatttgtag gctacgccgc caaccaaaag 2280 ggctggaaga ttctcgactg caaccaaggt gccatcatat cgtccgttca tgtaaccttt 2340 gacgaaagct gctctgctgc agctcgcgat ctcaagcgtc aggagttccg caagctggct 2400 tcacaccact ccatggattt tgagtattac tctcggaccg cgacatctga ggttgacttg 2460 ctcttctaca gccaacgccc caccgaagag aagccttccg ccaatgacat agtactactc 2520 gaagacttcg ttgctggctt tgacatggac tcggtcaata cttcgacgac atggccgcaa 2580 ctccgcgcat acgcatcgtc atccgcttca tggcttcaaa cgttggtcgg accacaagcg 2640 cttaccagtg aatcggtcca tccaatcatc cgagccgttc gtaagcagaa acaggctgag 2700 ctccttgtgg cactcgaaaa tctgaagtac aaggagtcgc tttgtgctgc ggttgctcac 2760 ggtatgggcc ttgaccctgc aacttaccgt gaagcaatgg cacgacctga tgcggcaaga 2820 tggagagaag ccactgatgc agaaatagcg tcgctcctaa ggaacaagac gtggacacta 2880 gttaaacttc cagcaggcaa gcgagctcta gcttgtaagt gggtgtttaa acgaaagttt 2940 aacagtgacg ggaccctcga gcgatacaaa gctcgcttag ttgtcatcgg gtgccagcag 3000 attaagttta tcgactttga cgacgtcttc gcacctgtgg tgcgtttgga atcactcaga 3060 gtgctgcttg caattgtgtg cattgaagac ttggaatgtg atcaaatgga catcgagacc 3120 gctttcctga acggtgtgct agaagaagaa gtgtacatgc aactcccaca agggctaaaa 3180 gttgccggtc aagaaggtct ggtgtgccgt ctactcaaaa ccctatatgg cctcaagcag 3240 gcaccccgag cgtggcacaa ggcgttagtg cagtacctca ccactgctgg atttgaagct 3300 ctgcagtgtg aagcctgcat ttttgctcgg agcataggca tcaagacgca aattgtagcc 3360 atttacgtgg atgacttggt gctgattgct aagactcggg gtgaagttgc tgaaatgaag 3420 gccggcatcc aaaaagcatt tcgtgcaaaa gacatgggcc ccgtcagcta cattgtgggg 3480 attaaagtag tccgtgacag gagacaacga aagctctgga tcaatcagca gttaagcgca 3540 gacagcatcg taaatcggtt caacatgcag cacgcgttcg ctactaaagt tccatcgata 3600 ccagggaaga agctgcgaaa gcttaacggc gctgatgcaa ccggcgatgt catgagtgag 3660 atggcaacga aaccctttcg acaagccgtc ggaagcctga tgtatctgat gatcgggtcg 3720 aggcccgaac ttgccttctc tatccaagac gtgagccgat ttctcaatgc ttacgctaaa 3780 ccacactggg aagctgtgaa acagattatc aagtatgtca aaggaactac agctcacggc 3840 ttggagttca gtgggtccga cgtcagacta tcagcttatt ccgattctga ctacgctgct 3900 gacgaagatg agcgaaagtc tgtatcggga tatgttacct tcattggtaa ttgtgcagtt 3960 acttggagca gcagaaagca acgcattgtt gcccagtcaa cagcggaggc tgagtacatc 4020 gcgctcgccc actgtacccg cgaagttctt ttcattcgac agttgctttc tgaacttgga 4080 tataagcagg aggagacatc gatatttgaa gacaaccagg catgtattgc tatagcagag 4140 aatcccaccc agcactcgcg aacaaagcat atcgacgtac ggtatcactt tattcgggag 4200 catgttcgag caaagcatat tgctctcaag tacgtgatgt caaaggaaaa cgttgctgat 4260 accttcacga agggactggg caaagaccac ttcgggctgc tgcgtggtaa gcttggagtg 4320 atcgaggtca acgcggatgc gggggagcga gctgtcgatg aagatcgaga aggtaaagca 4380 acatcacgcg gtaagaacaa caagtaaagc ttggaagagc tgcgagcagt catttcgcag 4440 gagtgcagat ggttagcttg ctggacagca aacggagatc tcactggtgt gcgaatggca 4500 agctcgctgg aatgcgaatg ataacctcgc tggtgtgcga acggaaactc gctgtagagc 4560 gaatggcaat cttgcaggaa tgcaaatgga gtcgatagac ctaacgatgt tcgttctgct 4620 agcagcgaag ctgacgaaga tgagagtgct cgctgcgggg gagtgt 4666 // ID Copia-49_PIT-I repbase; DNA; PLN; 5061 BP. XX AC AATU01006355; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-49_PIT_; KW Copia-49_PIT-LTR; Copia-49_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5061 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006355; Positions 18717 23777. XX CC Positions [2065-2559] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 3151..4128 FT /product="Copia-49_PIT-I_3p" FT /translation="MPLRELPESFPVSEENVDRDVEEAEADAIASGDTGRS FT CPSSVREDVSSDTDEEELGLGTSFRRSTRIRRPNARLSDYEIELPGSLVIQ FT AIYALLEPTSVKAALEAPDSDKWIEALNKEYTELLRNNTWELVEKPKDSKV FT LTSKWVFVRKRNARGEVERHRARITIKGCQQKYVLNVWETFAPVVCAEAVR FT LVLLLALHYGLLCRHVDFVTAFLNGPIDCEIYMYQPEFFYDGTGRLCRLLR FT SLYGLKQAPRIWYKTLDKYLRDCGFQRSKMDSGVYFRWVNRSPIFLTLYVD FT DIVIAATNQNIELVLDKLSKKFKIKELGNVSHLL" FT CDS join(679..1599,1603..3048) FT /product="Copia-49_PIT-I_1p" FT /translation="MSARERWIQIENKQTKREYANYIFARQQLYANMYTRE FT VKLTDWLREMQMQKRELQHYGKLISDEEFAEILLGNVSQTHREVVRQFSRH FT YAVLALPGVQYAAPTSAQVMNALLAEDDLDEKVKVAEDAPHSSISSARKTP FT NNNNKKFGGNAGKGGKKNRGRGRYKSQKKNGGKDNGDKPKGPECWNCGEVG FT HIRAKCPVNTAANDSQGPKQNASMECKRWQNKKTGDADGARNIDALTQRKI FT GAVETAATKCREVGIVEWVLDTATDVHVCTDLKLLQNAQQDRNHLFLDFDG FT VPKQKRLIGNVNLYVNVLSQREETLVLRGVVHTPTGSDNLLSSHLLEDTGW FT EIGFDHQRGKRVWWLKKAGAHLRLEKLGTRYRLRSRPADARGVKAVTQTSN FT ANGLERWHMRFAHLNYSALHRMIMQEAATGFGGLAGVGDSSINIDRKCWTC FT TSSKMKRMSYKKTETRRATSPYQKLMSDMCYMGITTYDGFQHFQLVQDEAT FT RYVWAFLLKEKQEASSVVISHLQWLLAQGHHIEVFSADQGKELVNNKVKTF FT LRGKGIEFLWTNAYSPEENGLVEKMNGVLTARVRSLLTTAHMPLALWGEAF FT TFAVEVVNVSASTALDGDTPYTRRFGERPDVAKLRVWGCIVHTFTPKVLRV FT NKLENPGKLGLFVGYAKNSEGYRILNLRTGNIQELRSVEFDEDLTVDNDYV FT DQLLTNRYRRGRFVLPDVIPLVRLPVMAAVTHEELTASPAKRQRLSNARSS FT GGPCAVAEQSPVSVGYPTPELSSSTPVGVALAAAQLSP" XX SQ Sequence 5061 BP; 1359 A; 998 C; 1380 G; 1324 T; 0 other; ataggtactg agcccaactt cgcgtgaagc tttgagagtt agcactctag agcttcctgg 60 catcactcct gatggctgcg tcaagtatat cggcagcatt gtcgacctcc acggcgattg 120 ccagtgttgc accacctaca actgcgagta gcagtaccag tactactagt acttctggat 180 taacgactgg tgctacttct gggtcgtcta ttgtgtttac tagtggtgtg aatacgactg 240 cagttgctcc gcttcaaggt ggttttactt tcggtggagt gatgactagt ggaatatctg 300 ctacgctgcc agtgtcaggc ttaaccgcct gtatgccgat gggtcttgga tcgacaggta 360 tgtcgtatgg accggggttg gctggatgta attccgctgg aggtgttacg atggttccta 420 gttatcgtgg tgctggagct ggggcacttg gcattaaaga catctcaaat aagcctcctg 480 taatgaaggg aagttttgac ctttatgcag tgcaacttaa gacctttttg actcgcttgg 540 gtttgtggag cgttatagac ggtagtgata tgcgtccgct tatgactgca agctgagttt 600 gatgcaagag ataacgccgc gcgagatgct attttgcgtg gagtgccgga ggcagatgca 660 gaattaattt gtcatcaaat gtcggcgaga gagaggtgga ttcaaattga aaataaacaa 720 accaaacgtg aatatgcgaa ttacatcttt gcccggcaac aactttacgc taacatgtat 780 actcgagaag tcaagttgac tgattggttg cgtgagatgc aaatgcagaa gcgtgagctt 840 cagcattacg gcaagctcat aagtgatgag gagtttgcag aaatattgct tggcaatgtt 900 tcacaaacgc atcgtgaagt tgttcggcag ttctctcgtc attatgctgt tctggcgctg 960 cctggtgtgc aatatgccgc ccccacgtct gctcaagtga tgaatgccct gctggctgaa 1020 gatgatctgg atgagaaagt gaaggttgca gaagatgcac ctcattccag tatcagctcg 1080 gcgcggaaga ctccaaataa taataacaag aagtttggag gcaatgcagg aaaaggaggg 1140 aaaaagaaca gaggtcgtgg gagatataag tctcaaaaga aaaatggcgg gaaagacaac 1200 ggcgataaac cgaaaggtcc ggaatgctgg aattgtggtg aagttggcca cattcgagca 1260 aaatgtccag ttaatacggc tgcaaatgac tcgcaaggtc caaagcagaa tgcaagcatg 1320 gaatgcaagc gctggcagaa taagaagact ggtgatgcag atggagcacg aaatatcgac 1380 gcactgacac aacgcaagat aggcgctgtt gagacagcag caaccaagtg tcgtgaggtt 1440 ggtatcgtgg aatgggtcct tgatacggct acggacgtgc acgtttgtac tgatctgaag 1500 ctactacaaa atgcacaaca agatcgtaat catctcttct tagattttga tggagtccct 1560 aaacaaaaac gtctcattgg aaatgtgaac ctctatgttt aaaatgttct atcccagcgt 1620 gaagaaactt tagttttacg tggtgttgtt catactccaa ccggatccga taatctgctg 1680 agttctcatt tgttggaaga cactggatgg gaaattggct ttgatcatca acgtggaaaa 1740 cgtgtgtggt ggttgaagaa agctggagct caccttcgat tggagaagtt aggaactaga 1800 tatcgcttac gttcgagacc agctgatgct cgaggagtaa aagcagtaac tcagacttca 1860 aatgcgaatg ggctggaaag gtggcatatg cgttttgcgc acctgaacta ttctgcgctg 1920 catcgtatga ttatgcaaga agctgctact gggtttggtg gattggctgg tgttggagac 1980 agctctatca acatagaccg aaaatgttgg acatgtacat cctcaaagat gaagcggatg 2040 tcgtataaga agactgaaac aagacgtgct acgtctccgt atcagaaact aatgtctgac 2100 atgtgctaca tgggtatcac tacgtatgac ggctttcagc attttcaact cgtccaagat 2160 gaggccacgc gttatgtatg ggcatttttg ttaaaagaga aacaagaagc tagcagtgtg 2220 gtgatttctc atctccagtg gttactggcg caaggccatc acattgaagt tttctcggca 2280 gaccaaggaa aggagttagt caacaacaag gtgaaaacat tcctccgggg caaaggcatt 2340 gagttcttgt ggacgaatgc ttatagtccg gaagagaatg gactggtcga gaaaatgaat 2400 ggcgtattga cggcccgtgt tcgaagtttg ttaactacgg cacacatgcc tcttgccttg 2460 tggggtgagg cattcacatt tgcagttgaa gtggtgaacg tgagtgcatc tactgctcta 2520 gatggagata ctccgtacac gcgacgattt ggtgagcgac cagacgtagc aaagctgcga 2580 gtgtggggtt gcattgtgca tacatttact ccaaaggtgc taagagtgaa taagttggag 2640 aaccctggta agttgggtct cttcgtcgga tacgcaaaga actctgaagg gtaccgcatt 2700 ttgaatttgc gtactggtaa cattcaagag ttgcggtctg tggagtttga tgaagatttg 2760 actgttgata acgattatgt ggatcagctt ttgactaatc gatatcgacg aggccgcttc 2820 gtcctcccag acgtgatccc acttgtgcgt ctgccagtca tggccgcagt aactcatgag 2880 gagttgactg catctcctgc taaacgacaa cgactatcta atgcacgctc aagcggtgga 2940 ccctgtgctg ttgcggagca atctccagtt agtgtgggat accccacacc ggaactgtcg 3000 agttcgactc cagtgggagt ggcgttggct gctgcccagc tgtcaccata aggtgcattg 3060 cagcaggaag ctcactctgt ttatcatgaa gatcaatgtg aagagaatgg taatcctgac 3120 gaaggtgtgg gtgtgcttca ccgctaccca atgcctctca gggaattgcc tgagtctttt 3180 ccagtgagcg aggaaaatgt ggatagagat gtcgaggagg ctgaagctga tgctattgct 3240 tcaggtgata ctggcagaag ctgtccaagc tcagtaagag aagatgtatc gtcagataca 3300 gacgaagaag agcttgggtt aggaacatcg ttccgccgct cgacacgtat ccgtcgacca 3360 aatgctagac tttccgacta tgaaattgaa cttccaggaa gtttggtgat tcaagcgata 3420 tatgcgttgt tggagccaac ttcagtgaag gcggcattgg aggcacctga ctctgacaag 3480 tggattgagg ctttgaacaa ggagtacact gaattgcttc gtaacaacac ctgggagttg 3540 gtggagaagc ctaaggattc caaggtacta acaagcaaat gggtattcgt tcgaaagcgc 3600 aatgcacgtg gagaagtgga gagacatcga gctcggatca cgatcaaagg ttgtcagcag 3660 aagtatgtgt taaacgtttg ggagacgttt gctcctgtgg tgtgtgctga ggcggtgagg 3720 ttggtactcc tgctcgcact acactacgga ctactgtgtc gtcatgttga tttcgtgact 3780 gcgtttctca atggccctat tgactgcgag atctacatgt accaaccaga gtttttttat 3840 gatggaactg gtcgtctatg caggctgctg agaagtctgt atggcttaaa gcaggccccg 3900 cgtatttggt acaaaacact tgacaagtat ttgagagatt gtggctttca gagatccaag 3960 atggacagtg gagtttactt tcgctgggtg aatcgaagtc ctatcttttt gactctgtac 4020 gtcgatgaca ttgtaattgc agctacgaac caaaacatcg agcttgtact ggataagctt 4080 agtaaaaagt tcaagatcaa agaattgggc aatgtcagtc acttgttgta aatggtgatc 4140 aagtacgttc ctggcaagat gctgtctatt tcacagagtg gctatgtagc acaattgctg 4200 gagcgtttta agatggatat tgcaaggcga tgccaacgcc acaagctaaa ggcaattttc 4260 ctcttccagg agatcctgac aagaagactg tttgtgtgaa tattgatcct gatgtgacta 4320 tcagtgtatt gtgggttcat tgcagtatct agttagctgt tcgcgaccgg atatcgcgaa 4380 tgctgtgcgg acgctgggga aattcctcaa ccgctacaca aaagaacatt ttgtgttggc 4440 gaaacgtgtt cttcgctacc tgcagggtac gcgtgagtac gggctagtgt ggtataaaac 4500 ggagtcgcca gcaatgcaac tttcagctta cgcggatgca aatttaagtg aagagaaaga 4560 tgatcgtcgt tctatcacgg gttatgtact acagctaaat gggtgcacgt ttgcttacaa 4620 gagcaagaag cagctggtca ttacggacga tacgtgcagt gctgagtttg tggcagctag 4680 tgagtgttca aatatgatca tgtggacacg caatctgtgc attgagctga agctccgacg 4740 tactaagaag actattctct atgaggataa ccaagctgcg atccaagtga ttaaagaagt 4800 gcgtagtagc tacaaggtca agcgtgagga tctgaaattt cacaagattc gtgattttgt 4860 ggagcgtgga atcttccaag taaggtattg tccaagtgaa gacaatattg cggacatttt 4920 cacgaatcca ctcggtccac agcagttctg taagctgcgt gaacgtctta acgtgttgcc 4980 ggtgctggac aacaagtagt ggtttatggt gaccaacaag tgactactgc aagtggcaga 5040 ggcagcaaca cgaagtggga g 5061 // ID Mariner1_PPa repbase; DNA; PLN; 1584 BP. XX AC . XX DT 10-DEC-2009 (Rel. 15.07, Created) DT 10-DEC-2009 (Rel. 15.07, Last updated, Version 2) XX DE Mariner-type DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Mariner1_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1584 RA Bao W. and Jurka J.; RT "DNA transposons from moss."; RL Repbase Reports 10(7), 948-948 (2010). XX DR [1] (Consensus) XX CC >97% identical to consensus. XX FH Key Location/Qualifiers FT CDS 341..1354 FT /product="Mariner1_PPa_1p" FT /translation="MPRLCESLKHQALVQLRSGVSTRKVADSLGMSQSSVA FT HLRREISGEIEKQRGGRPKVLGEQEKRLGVHLVTAGCLKTASAAAKQLREK FT TGKHFSDITLRRGLREAGLGACVQQKKPLLAKRHVLARLSFAHKYKNWTVD FT DWRRVIFSDETKINLINSDGRSWCWLREGERPGPKHVSQTVKHGGGSIMIW FT GCMTAFGPGAWYQIEGRMEQHLYKKILETYLQSTTQNYNLDPTKVVFQHDN FT DPKHTAKSVQFWLSSQPFQLLRWPAQSPDLNPMEHFWALLKQRLSQVTPRP FT RGVQELWENVCSIYPSFDAKDCEKLYKSMPRRISAVLEAKGYWTKY" XX SQ Sequence 1584 BP; 469 A; 259 C; 358 G; 498 T; 0 other; cagtgacaaa caaaaccgag tacaaaatct gaacactcat agttcattga tccttccaac 60 tgacacataa gtcaattgat agaattactt ttttattgtg tgtattcatc cagtcctcta 120 catggatgaa aaatctcatt atcatttgag gtagggttta tgagaaaagt gttgtagaag 180 cacacagacg tgcgtactca gttttggttg cttcttcttg ctgaatttcg aaatttcaat 240 gtacactcct tgttgcaaga tttgagggca ttttttgttt gttgtgttgc tcttgttgtg 300 tactatctat agtgaaagtt gatttgtcaa ttgtatctct atgcctcggt tgtgtgaatc 360 attgaagcac caagcattgg tgcagcttag gagtggtgtt tctacaagaa aagttgcaga 420 ctcacttgga atgagtcagt cttcagtagc tcatctgagg agggagatta gtggtgaaat 480 agaaaagcaa agaggaggac gtccaaaggt tttaggagag caagagaagc gacttggtgt 540 gcaccttgtc actgctggtt gtctcaaaac ggcaagtgca gctgcaaaac aacttcgaga 600 aaaaacaggt aaacacttct cagacatcac cttgaggcgt ggtttgagag aagctggttt 660 gggtgcttgt gtgcaacaaa agaagcctct acttgccaaa agacatgttc ttgcaaggtt 720 gagttttgct cataaataca aaaattggac cgttgatgat tggagacggg ttattttcag 780 tgatgagaca aagattaacc taatcaactc agatggtagg tcttggtgtt ggttgagaga 840 aggagaacga cctggaccta aacatgttag tcaaactgtc aaacatggtg gtggttcaat 900 tatgatttgg ggttgtatga ctgcttttgg gccgggtgct tggtatcaaa ttgaaggtag 960 aatggagcaa cacttgtaca aaaaaatttt agaaacctac ttgcaaagta ccacacagaa 1020 ttacaactta gatcctacta aggtggtttt tcaacatgat aatgatccca aacatacggc 1080 aaaaagtgtt cagttttggc tctcttcaca gccatttcag ctccttcgat ggccagctca 1140 atctccagat ttgaatccaa tggaacattt ttgggccctt ctcaaacagc gtttaagcca 1200 agtcactcca aggccaagag gtgttcaaga attgtgggag aatgtttgta gtatttaccc 1260 tagttttgat gcaaaagatt gtgagaaact atacaaaagt atgccaagaa ggatttcagc 1320 tgttttggaa gcaaaaggtt attggactaa atattgaagt ttgaagattt tctttgaaca 1380 atactgagta caagacatag ttgttgattt gactttgtag aaggatgttt agttatcaat 1440 ttgatgtgca actttgtaca tgtgtacaag actgtgtgta ttattccatg taactttcag 1500 atttataaag caatcattga aatttctgta attgctcttg aaagttggca cttcagattt 1560 tgtactcggt tttgtttgtc actg 1584 // ID PGGYPSYX1 repbase; DNA; PLN; 2232 BP. XX AC AF229251; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE PGGYPSYX1 is a portion of a gypsy-like LTR retrotransposon, a DE partial sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; PGGYPSYX1; pol; Retrovirus. XX OS Picea glauca OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea. XX RN [1] RP 1-2232 RA L'Homme Y., Seguin A. and Tremblay M.F.; RT "Picea glauca gypsy-like retrotransposon."; RL Unpublished. XX RN [2] RP 1-2232 RA L'Homme Y., Seguin A. and Tremblay M.F.; RT "PGGYPSYX1."; RL Direct Submission to Genbank (28-JAN-2000)Tree Biotechnology, RL NRCan, 1055 du PEPS, Sainte-Foy, Que G1V 4C7, Canada. XX DR GenBank; AF229251; Positions 1 2232. XX SQ Sequence 2232 BP; 591 A; 563 C; 512 G; 564 T; 2 other; ccatacacca tcaggtggtt gcaccaagga cgggacctcc acgtcagtcg acaaatgtcg 60 ccttccctac aacatcaagc ccttcacgga tcaggtatta tgtgacattg ctcctcttga 120 tgtttctgat gtattattag gccaaccata cttgtggaag caacatgttg tgtatgagtc 180 caggcctcat gctgttatta tcactttgga caataagttg tacaggatac cggagatagc 240 accgcctacc accatctctt tggttactgt aaaacaatgt agtaagctca tttccaaaac 300 taggaaattt gttttcctga tgattcgccc tcagggaaag cggaagactg tggccataac 360 ctccagacaa ggtcccactg caggaaaaaa acagatggat aaggtcgtgg aggagtacga 420 ggacatcttc acctcccccg caggggtgcc tctacactgt caggtcaagc accccatcaa 480 tctgaaccca ggtgcaccgc tgcctaatgg acccatctac cggcactcta tcttggagaa 540 tgatgaaatc aagaggcaga ttcaggagtt gttgcagaaa ggtcacatcc ggccgagttc 600 atcgccctgt gggagcccga tcgtattggt gcagaagaag gatgggactt agagactctg 660 cattgactat cgggcactga acaagatcac tgttcggaat aggtacccga tcccacagat 720 tgatgacctt ctagaccaac tcaagggaga aaaatatttt agcaagatcg acctgaagtc 780 tgggtatcac caggtaccaa tcgaaccctc tgatgtgtgg aagactgcat tcaaatccaa 840 ggagggcctt ttcgaatggt tggtcatgcc tttcgggttg acgaatgccc ctgcaacctt 900 catgaggcta atggacgaca tcctgcggcc attcaccaac tcatttgtag tggtgtactt 960 ggatgatatt ctgatcttca gccagacttg ggaagagcac ctccaccata tccgacaggt 1020 cctccaaaca ctgcggcaac ataagttgtg tgccaatttg gagaaatgca cttttggcat 1080 aacccaggtt cagtatctgg gatacattat tgatgagcgg ggggtgcatg tggatccaga 1140 aaagatccaa gtcattcagg attggccagc cccagccacc ctaacagagc tccgtagttt 1200 tttaggtctt gccaatttct accgtaggtt tgtgttggga ttctttcata tcacttggcc 1260 cttgagtcaa gtcaccaagg gaggagctaa agcaaaattc ttttggtctg aatctcaaca 1320 gaaggcattc ggggagttga aacatcgcct ctgctctgca ccagtgctca cattaccaga 1380 cttgcaacaa ccatttgaga tcgagataga tgcctctgac tatgctattg gggcagtcct 1440 tactcaacat gggcatccag tggcatatca cagtgagaca cttttcgaca cagtccggaa 1500 gtatcccact tatgacaaag aaatgtattc cattgtgcaa gcttgttgac aatggaagca 1560 ttaccttttg ggaaaaggaa acggtcattc cacaccgacc actgacccct gcagttcata 1620 cagacacnag gggaagttgc agaacgatcg ccgtcgcctc agtcgaccac ccatcggtgg 1680 gcgcttaacc actgtgctca attcttgtgg gcacgagact tccgattggc tgcttctcta 1740 cacaagtgat ccagaattcg atcacacatn caatacactc ttgaagggta agcaagttcc 1800 caattttcac ctccaggatg ccctgctttg tcacttggga cacctttttg ttccttcaag 1860 cgagcatgcc aagatgattt gggaggcgca ctacagtcga gtcgctgggc atttcggggt 1920 cgagaaaacc gtggcaatac tgcaaaagta tttctattga ctgaaccttc gacaagattt 1980 cgggaagtac atcaagtcct gcactgcttg cgccattgcc aaaccgacca tcaagaagca 2040 aggcctctat actctgcttc ctacccccag tcgaccatgg gaatccatct ctatggatta 2100 catgtcgggc cttccttcta ctaagcatag caatgactgt gtttttgtgg ttgtcaaccg 2160 attctcgaag atgtccatta tgatggcctg caagaagaat atcacagcag aagccactgc 2220 taaactcttc tt 2232 // ID ARET1LTR repbase; DNA; PLN; 1232 BP. XX AC AB003364; XX DT 15-JAN-1999 (Rel. 4, Created) DT 15-JAN-1999 (Rel. 4, Last updated, Version 1) XX DE LTR from Ty3/gypsy-type retrotransposon ARET1. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ARET1I; KW ARET1LTR; Gypsy superfamily; LTR retrotransposon ARET1. XX OS Adiantum capillus-veneris OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Polypodiopsida; Polypodiales; Pteridaceae; OC Adiantum. XX RN [1] RP 1-1232 RA Nozue K.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (24-APR-1997). Kazunari RL Nozue, Tokyo Metropolitan University, Department of Biology; 1-1 RL Minami-ohsawa, Hachiohji, Tokyo 192-03, Japan RL (E-mail:tkanegae@comp.metro-u.ac.jp, Tel:+81-426-77-2564, RL Fax:+81-426-77-2559). XX DR GenBank; AB003364; Positions 2438 3669. XX CC ARET1LTR is an LTR from ARET1 retrotransposon. XX SQ Sequence 1232 BP; 294 A; 274 C; 336 G; 328 T; 0 other; tgcacttttg gatgcggtcc caatgaggat tgatggtcag atgaccacag ggagaccaac 60 ggaatcattt cctaaaattt agggaactgc tattttgggc cacgaaatgt gttcgcgtca 120 ttacctccgg tatgactagg ggaacacttt acaactctgc cgcgaagtca actgagcgac 180 cggtcgggag atttttaagc ggcatacccg aaacgggaaa tggtttgtaa atgcgccaag 240 tggcacactc ttgtgcactt tcctcatgca agaagaattg acgttgaatt tcatgctggg 300 agaggcctca tttgcaaact gtctcacatg ttaagagcta tggagtgctt cctttccctc 360 ttatgtacag tctggtgcca ggagtgatgc ccggtacgct atgcagtgct ctctctctct 420 ctctccccta tgagcagtat gttatgcccc tctagtgggc ttttcatttg accaatgtac 480 agttatgtgg gttcatgcgc gattgccgag gcaagagcct cttgcacagg tattggatta 540 gctagtggct aatcccctgt aggtacaggt gaattcggag aggtttcacg tgagaagtct 600 cgtccgattc aaagggcaag tagccctaca ggtgcgggag ctcgaggtct tgctacagat 660 gcgaccggca cgcgaaacgg agcccaaaac agggaattac agcctgctgt gtatttttgc 720 aggtttaggg tttcggccct aaacggaccc taataccccc aagaggttcg gggacacgag 780 gggactgttg tacaggtgat ctggcgcatt ttcggggcag aaaacaggga attcagtgtg 840 ctgcagattc tcgccaagtt ttgcaaagcg tccgtatgcg tcgggaaagt catctattgc 900 gtggggatac tgactatgaa gcgtcctagt atagttatgt tgtcgaaatc gggccagaac 960 aggtgtttct tagacttgat tgtaaggggt agctcgtagg agatcacagg ttttattccc 1020 tttgttaaag aataaaggaa taccgaaagg ggcgccaaat ttggggccta caggttgtca 1080 gcatctgctc ggagcattct agctcccgag ccgtgtgtgt acttaggtgt taatccccgt 1140 tataaggtta cctttgcaaa gtactctgtg tgtgtctaaa gtaaagaatt tcgggtgaaa 1200 gccaacgcct accaccccac gggccggttt ca 1232 // ID Gypsy-26_PIT-LTR repbase; DNA; PLN; 408 BP. XX AC AATU01001484; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_PIT_; KW Gypsy-26_PIT-I; Gypsy-26_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-408 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001484; Positions 54454 54047. XX SQ Sequence 408 BP; 97 A; 106 C; 96 G; 109 T; 0 other; tgtggtgaat cacaggtatc aagccggatt ccactgccat caagctgccg actagacagt 60 gagcaacctg gtgcatccag gtttatcaca gacggagagg tgcctgactc tggcgcgtcc 120 aagttagtat cctctacctg gctaaatatt catggatctt gtaggacaga ccgccagtga 180 tccaagtgga atctctggct gtcttgcatg ttacctttga tgctgtcacc agcatcagag 240 ctgtacagtt cattggagat ggagggttgg tgacgactaa cttatcctct cactctacaa 300 tctgctagca atagcctaca tcaatacact aggctacaag tttcccgcag gcttgctacc 360 tgccctgctt ggtgtttggt gttgcttcaa cttccggaaa acaccaca 408 // ID Gypsy2-LTR_VC repbase; DNA; PLN; 548 BP. XX AC scaffold_48; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-VC; KW Gypsy2-I_VC; Gypsy2-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-548 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 130-130 (2008). XX DR Genome; scaffold_48; Positions 50272 50819. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 548 BP; 126 A; 161 C; 133 G; 128 T; 0 other; tgcgtaatga ggcagttgct gcgcaaaagg gtacctgcgt cttacgttga ccatacgaca 60 gttgtacgaa tggcgggcgc gtttgccata tataaggcgc ggcctgacca atattttcta 120 agggatattc caatcataca actcccgcgc acggtagcag gacgcaccgg ccaaggcagt 180 ttgtaacgga tatcgccttc acttggcgtg gatgactccc acccatttta tcttgtcaac 240 agccaaccag gttccaacct gacattgggc ctagtggcca agaggcagta aaactctgct 300 cacatcaggc tcacaaccac acctgggcct acggtctcag gacaaaactc tgattctgct 360 tccgctcgcg cacacaaatc tcgatcctat ctcgcttaag acaatctact ggtatcgatt 420 cctttctata aacgatcctg ggcgccccgg tgtgtccatc cagcggttcc cccaaacgcg 480 aaaatatttt tgggctgccg ctgggtgccg cccgccgcgg cgcggctggt atcgagacta 540 aggtttca 548 // ID Gypsy-14_PR-I repbase; DNA; PLN; 6911 BP. XX AC AAQX01001936; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PR_; KW Gypsy-14_PR-LTR; Gypsy-14_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6911 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001936; Positions 3814 10724. XX CC 'GCATG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 59..1078 FT /product="Gypsy-14_PR-I_2p" FT /translation="MAQFAHLPPNQQDGLKTLMSLFGPEGVVHLASQGPDA FT ISARLEAFSSYENALLEHLQQKMTAVTASTTPKPASDGAPRVKPLMVSVKT FT FEGKEGENLLLWIREVEMAMASAILQTEQLRVALAVSKLGGRAREWALTCG FT TSVDSAFPSWDQLKFQLSRVFSPPNQVYRVRSRFLATRQGKRELVDFVQEL FT RTLIAGMAADPLPEAATVTIFMEGLRTGVARTEVFRVHPTSFEEAVSVALN FT AEFNFKSARAGWGTSQTSSSGAAGSSDGPEPMDLSHAEDEEAELLDAEQRI FT GIRRCFVCWSTQHLRPGCPLRKQRQAPASRSPAYYQKPGSWRGNVNAQ" FT CDS 2524..4269 FT /product="Gypsy-14_PR-I_1p" FT /translation="MPTFCVRKSNGKWRIVHAFNKLKAATIPAQTPIPRKD FT VLQNDVVGCTAYSALDLVDGYYLLLMRVSDIPLTAVSTPSGMLWEWLMMPQ FT GLSNAPATFNRLVTQLFRPHRAYAQTNFDDIFVHSRAEHRKSDVVNHIDHL FT RAVLECMRTNKLYANASNCIFGAKEIPFLGCFIGKRGLRADPAKVKTIVDW FT PVPKNQKDLRKWLGLANYLHKYSENYADMTWPLSNLLTKDEEWAWDTEHQD FT DFEAVKESLLYAPILALPDPDRPFSVVCDASDFATGCALLQADTEERERVI FT AFESRQLKAAEKNYPVHDKELLAMKYALVKFRVHLLGSKPFVIFTDHASLR FT TATQSPHLSQTMARWLSFFAEYNFEVKYKPGRQNGLVDALSRRPDYALSHV FT TTVTSSATDLIRAAYARDAMCVALLRALGSKEFEDSDCKLSARLRARLHRY FT SLDGGLLYYNTDPEDTPRIVVPHDEDLKYRILYEAHDTALSGHLGREKTYG FT SVSLSYWWPKLYKWTSTYVRTCDTCQRVKPSPHAAAPLTSLPVPSGYWKSM FT GMDIVFGLPKDSEGNTSLCRPFEQDGSCNGGAGHH" FT CDS 4272..5354 FT /product="Gypsy-14_PR-I_3p" FT /translation="MVKVQPSCLLTGFSASMGCPSRSSRLETPVSRASSGR FT PSSRRLDMSTTDHPQTDGQTERVNRVVEDVLRSVCAETPKRWSTMLPLVEF FT ALNNAVHVSTGFTPFYVNGLTHPRVPLTLPLRGSGLGGGEIAGRLADVSPL FT TVRKQVDEFLSTRLSVLRHVRDAMAERQDQQKENTDARGRGNIESYGVGDL FT VLLNAKKLPTHAVSAVFKTKLRPRFIGPFKVVTKKGLAYTLNLPKKMRTHP FT VFYVGLLKPYRDPARVSAEAPAPGRAQVAQPQHSAEVAAEGRLDPPASPDL FT AQGRRPGSPAQLGPRTSRRAPAADQSHAMSDYRRSRPDRESHGDVRPPGAA FT IPSRPKCPHAPIDAPSAT" XX SQ Sequence 6911 BP; 1441 A; 1883 C; 2096 G; 1491 T; 0 other; cttggtagca cttgtagtca atcctacacc tgagttttac gactgtccct ctgcgaggat 60 ggcgcaattt gcccacttac ccccgaacca acaggacggg cttaaaacgc tgatgtcctt 120 gttcggcccg gaaggtgtgg tccatcttgc ttcgcaaggc cccgacgcga ttagtgcgcg 180 tctggaggcg ttctcgagtt atgagaatgc tctgttggaa catctacaac agaagatgac 240 ggctgtgaca gcgtctacga cgcccaagcc ggcatcagat ggagctccac gagttaagcc 300 gctcatggtg agcgtgaaga cctttgaagg caaggaagga gagaatctcc tgctctggat 360 tagagaggtt gagatggcca tggcgtccgc catactccag acggagcaac tgcgcgtggc 420 cctggccgtg tccaaactgg gtggccgggc ccgggagtgg gccctaacgt gtggcacgtc 480 ggtggacagc gcgttcccat cctgggacca gctgaagttt cagctgtcgc gagtgttctc 540 gccgcctaac caggtctatc gcgtgcgatc acgcttcctg gctacccgcc aaggaaagag 600 ggagttggtg gacttcgtcc aagagttacg aactcttatt gccggtatgg ctgcggatcc 660 tcttccggag gcggccacag tgaccatctt catggaaggc ctccgcactg gcgtggccag 720 aacggaagta ttccgagttc accccacctc ttttgaagag gcagtgagcg tggcgttgaa 780 cgccgagttc aactttaagt cggcccgagc cgggtgggga acatcgcaga cgagctcatc 840 cggagccgcc ggctcctcgg atggacccga gccgatggat ctcagccatg ctgaagacga 900 agaagctgag cttcttgatg ccgagcagcg catcggcatc cgccggtgct tcgtgtgttg 960 gagcacccag cacctgcgac caggttgccc gctgcgtaag cagcgccagg ctccggcgag 1020 ccgaagccct gcttattacc agaaacctgg ttcgtggcgg ggaaacgtca acgctcagta 1080 ggggcggggc ggcctactga ggaagaatta agttctgtta agcctcagca aggaggtcag 1140 cagggcttag cctcaaagag caccgtgctc tttaatacgg aacgtgtatg caaaccgggc 1200 ttgctggtcg ttgaagcgac cgtgaagggc tttaataagc cgtggacgat attgatcgat 1260 tcgggagcgt cggacaatta tgctcgacgc tccacgatgg aaggatgtcg gcagtatgcc 1320 gaggcgctgg tagcgcgtac gagtgatatt atcactgtcc gtctcgcgac gggatcccgt 1380 gttacggtgc tgtgaaccgt ggcgtgaagt ttctggactt cgatagcgtt gagcgctgtc 1440 tgggccttga cctggattcg agatatgatc tcatcctggg catggcatgg ctggaacgcc 1500 atgaaccatg gattgattgg aggtctaaga ccttaggcgc taagcggttg cctcctggtg 1560 atgctttggc gagtcatgca cccaactctg ctaggaagca aaagcgctat tgacacgagc 1620 attggaccga gacggtcaac gtgctggaca tcggcgtgtc agagttgatt gacactcatg 1680 atgtcgtaga caagagtccc gagggggctg tacatggagc ggcacgttat ccgctgagcg 1740 gtgggcgcca cggtggtgaa gaatcgctgc gtgccaacga tggcgcggtc ggcaacgagc 1800 cgagtcatcc tggacccagc tctaacgatg cgtgtggagt ggcacataac ccactgggtg 1860 gggactgcga actatgcagg atgtcgagtt tgacgtcgac gctccgatgg agcaacaaga 1920 ggtggaaaca cctgagggct cctttggtgt gaatatgcag gcctccccgg ctgcgagacg 1980 caattcgtct gttatgacac agcaagtgtc gggagtggag gatagcgaac agctatatac 2040 actcgttaat ggagtgaccg gcgaggtcgc tggcgacggc agccttgagg ctgttcccgc 2100 cgcagacgct ctgctagagc tggacgaaat atcaattgcc gagtttggca aggccttgaa 2160 ggccggcgaa ttagccgagg tcgctattat acgacctgaa gatgagttaa actcgtcgtc 2220 ccttatggat gaaacagtac gaatcaggcg ctttgtgcgc gtagtggatc ggcgatcctg 2280 aagaatcctt cagatccgta ctatcccttg gttaaggaat accaagatgt cgtttccaac 2340 gatccgcctt ctggcctacc tccagatcga ggtgtgcgtc atgagattga cctggtccct 2400 ggaaccaaat actgcgtaac aaggcagtgg cccttgccaa gggagcagtg tgacgccatt 2460 gacgcgttct tccgtgcgaa gcacgaggcg ggcatggtgc gcgagagcaa gtctccgcac 2520 tagatgccaa cattctgtgt cagaaagtca aacggcaagt ggcgcattgt ccacgctttc 2580 aataagctca aagccgccac cattccggcg cagacgccta ttcctaggaa ggatgttctc 2640 cagaacgacg tggttggatg cacagcatac agtgcgctcg acttagtcga tggttattac 2700 ctgttgctca tgcgtgtgag cgacattccg ctgacagcgg tcagcacccc gagcggcatg 2760 ctctgggagt ggttgatgat gccccagggg ctgtcgaacg cgcctgcgac gttcaatcgt 2820 ctggtgacgc agctcttccg gccccatcgg gcgtatgcac agactaactt cgacgacatt 2880 ttcgtccaca gtcgtgcgga gcacaggaag tcagatgtgg tcaaccacat agaccatttg 2940 cgagcggtgc tcgagtgcat gcgcactaat aagctgtacg ctaacgcatc caattgcatc 3000 ttcggtgcta aagagattcc cttcttaggg tgcttcatcg ggaagcgcgg ccttcgagcg 3060 gatcccgcta aggtcaaaac cattgttgac tggccggttc ccaagaacca aaaggactta 3120 cgtaagtggc ttggcctcgc caactacttg cacaagtaca gcgagaacta cgctgatatg 3180 acttggccat tgtctaatct ccttacgaag gatgaggagt gggcctggga caccgagcat 3240 caagatgatt tcgaggcggt taaggaaagt ctcctatacg cgccgatcct ggcgttgcca 3300 gatcccgatc gtccatttag tgtcgtctgt gacgcctcgg actttgccac cggctgtgca 3360 ctgctgcaag cagacaccga agagcgtgaa cgcgtaattg cgtttgagtc tcgccagctc 3420 aaggctgcag agaagaacta tccagttcat gacaaggagc tacttgcaat gaagtatgct 3480 ctagtcaaat tcagggttca cttgctaggc tctaagccat ttgtcatctt tactgatcat 3540 gcgtcactac gcactgcgac tcagtcgcct cacctctcgc agacgatggc ccgctggctc 3600 tccttctttg cggagtacaa cttcgaggtg aagtacaagc ctggcaggca gaacgggtta 3660 gtggacgcgc tgtcccgcag acccgactat gcgttatctc atgtcacgac tgtgacgtcg 3720 tccgcgacgg acttgatccg agctgcgtat gcgcgtgatg ccatgtgtgt cgctctgcta 3780 cgtgctcttg ggagcaagga gtttgaagac tcggactgta agctgtcggc gcgcttacgc 3840 gcgaggctgc atcgatattc tctcgatggt ggcctgctgt attacaacac agatccggag 3900 gatacgccac gtattgtggt ccctcacgat gaggatctga agtatcgcat cctctatgag 3960 gcacacgaca ctgcgcttag tggccatctt ggccgtgaaa agacctatgg ctctgtgagt 4020 ctctcctatt ggtggcccaa gctttacaag tggacgagca cgtatgtgcg cacgtgtgat 4080 acgtgtcagc gggtgaagcc ctcaccgcat gcggccgcgc cgctgacaag cttgcctgta 4140 ccctctgggt attggaaatc catgggtatg gacattgtgt tcggccttcc gaaggactcg 4200 gagggcaaca cgagcctgtg tcgaccgttt gagcaagatg gctcatgtaa cggcggcgcc 4260 ggacaccatt gatggtaaag gtacagccaa gctgtttatt gaccgggttt tccgccagca 4320 tgggctgccc gagtcgatcg tctcggttag agacccccgt ttcacgggca agttctggtc 4380 gcccgtcttc aaggcgattg gacatgtcca caacggatca tccacagacc gatggtcaga 4440 ccgagcgcgt taatcgcgtc gtggaggacg tcctccgcag cgtttgcgct gaaacgccca 4500 agcgttggag caccatgctt ccactcgtgg agttcgcatt gaataatgct gttcatgttt 4560 ccacaggctt taccccattc tacgtgaatg gcctcaccca ccctcgcgtc ccgttgacgc 4620 taccactccg tggttccggg cttggtgggg gagagatagc cggtcggctt gctgatgtca 4680 gccctctaac tgttcgtaaa caggttgacg agtttctgtc aacgcgtctg agtgtccttc 4740 gacacgtacg tgacgctatg gctgagagac aagaccagca aaaggaaaac acagatgcca 4800 ggggcagagg taacattgaa agttacggag tcggagactt ggttttatta aacgcaaaaa 4860 aactacctac acatgccgtt tctgcggtct tcaagacgaa gctgcgccca cgcttcatcg 4920 gacctttcaa agtcgtgacc aagaaaggcc tagcgtatac gctcaacctt ccgaagaaga 4980 tgcgcaccca tccggtgttt tatgtgggct tgctcaagcc gtaccgggac ccggcgcggg 5040 tgagcgcgga ggcgccggca ccgggacgtg cgcaggtggc gcagccacaa cactctgctg 5100 aagtcgcagc agaaggtcga cttgaccctc cagcctcgcc agacctcgct caaggtcgga 5160 gacccggatc gccagcgcag ctgggacctc gaaccagtcg acgcgctccc gcagctgatc 5220 aatctcatgc catgagcgat tataggcgtt ctcggcctga tagagagtct cacggagatg 5280 tgcgacctcc cggcgcagcg atcccatcgc gtcccaagtg tcctcacgct ccgatcgatg 5340 cacccagtgc gacatagcgg ccgccggcgt tgctcgatga gtagggtaat cgccacttcc 5400 acgtggaacg gattgtggct cggcgtcgcc gccaaaatca ataccagtat ctggtgaagt 5460 ggcgagggta cccccactcg cagaactcat gggagtttga ggtacccctc cggcaagact 5520 gccctgacgt cgtggacgct tttgatcgaa acgatcgacg gcgccctggg ggctcgcttc 5580 ccggcagtag gtcggggacc gatctgagct caagctttga ctctgggctg ctgcagccga 5640 cgattcacct tgtggaaggt ctgcagagct cggaggagca tgttgaggag cccgcgcagg 5700 gcggggctgg aagcccgaag gaagttggcg tttcgccttt aacatcgcga acacgaacag 5760 gagccggcgc tctaacagga cgtcgtactt cttgaagcta gcttgcagcg caacaatgga 5820 agagagctta cggtcccctt ccacccagag ctcgaattga gcgacatcct gctcctggcg 5880 ttcgccagcc agtaggacca ctggatacgt ccgcatttgc ggcacggacg ccccccgggc 5940 ttggagctgc aggcgctcac ggtactcgcg ttgagtggta agctgaggcg tcagcaacct 6000 ctggcggagg tcttctcgct gagcgacctc ttcgttggaa tgggccgcgg gcccgatgac 6060 atagttgcga caccgcaagg cgagccactt cgttggggtc gtgtggctca aagccgtagt 6120 cacggcggct cgggtggagc agaggccgtg ctatcggacg ctgggcgcgg ggcgcctctc 6180 ccatcgcgac cagttgttgg ctttggacct cgtcgaggtt gttggaaaca acgttggcct 6240 ccatagactc gtcctcatct cgcgacggta ttgacgacgt tgtccgcaac gcggtcagag 6300 ctgacatgtt ctacgattct acgaacggat tgggcgtgcg taggtcacgc ttgtcggtcg 6360 tacgacctcg tggaggttcc tcctcctctt gccggaggca cgtatcactg ccgtagtcga 6420 cctcctctct ctctgcgagg ccttcaaaga ggatttcatt cgcgcggcga atacgcggct 6480 tcggcgcgtc tgccgagttt gtcggggccg acatagcggc gcgagcttgt ttggagtaat 6540 actccgccac agtgagcgtg gttctcgcca caggcgccga tgcgttgtgg ccagcggccg 6600 aggaagcact acgtgtggac gagtttggcg ggctgtgccc gggcggcgac gacgcggagc 6660 gtgggctgcg gttggcactc agtgctactg cttgtcgtgg gctgtgcccc ggagataaag 6720 acgcggagcg tggagtacgg tcaacagacc aagaatcttt ctggctgtca gccatcgatg 6780 agccacgggc gtggtgcgct tgttgaactt ggaaagttct tgagcgaggt ccgaatacca 6840 agcagcgata cctctgatga gggaaagtga cgagtgtcga cacgtggtgt gaacagtctg 6900 gtgggggagg g 6911 // ID Copia-22_PIT-I repbase; DNA; PLN; 5169 BP. XX AC AATU01003127; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-22_PIT_; KW Copia-22_PIT-LTR; Copia-22_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5169 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003127; Positions 55565 60733. XX CC Positions [2303-2809] - Integrase core CC 'TGTCG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..5077 FT /product="Copia-22_PIT-I_1p" FT /translation="MSPTTEASQDNKRTSGAEQRREGVNQTATGAVPSGSN FT SADSEEKGELTENFNPTIGDHHSRVPVTVKDSVFPLAESKDGQRSLAKPAE FT EKETANWQLTIRSLKDRSPSPPARREDTFGNSSTSRRKADTEPEDKMNRVA FT AVVTLQVDKKLSKPEDYPAWRLRVLTGLNVSNMAQLVLGKEPFNDSWSSSV FT KDCWNSRYRKANGLLVSAISDETLIRYQDVVNQADPVELWRVLAEDFGQGR FT GVNTVLIWERIYGRMLRPDEPVRDYIADLLKMQRELAENNDPISDSRLAKI FT MLTKAHAVYPTIADEVTEKLRRDPDYKYTVRDARGRLENAEIQRNQRVRES FT SSSAANSRGLASKPQANAVQQHGNSEKGPRRQRGGKYGRNRGSSVASTNTG FT KSNAERIAKKKKNSKCNACGEKGHWRGDAECSQGRRQTQTNQGDEQVRSLS FT GAILRQHEPPVSRDRVVECMTSRDEHAEHAVGGIRNDDRLISLNDVRSVLG FT LQAVEQLEQQLHRRNTGAGGVTVRAASPQYSPTSPPSSPVVRSPTYSPTTP FT ASPDYAVNAVIGDDKHFPAMQADEIEWLLDSGSQVNLCGDLTCFSHVEHGT FT SSNVMMACGQSEVMQASGSVVFRVENGDTGKWEPRRLDNVHYSPNAHVNLI FT SLGYMRACGFKLVFNEDQSTAWLCKDGLKLRFDHHDLLYRLRAKRSVRLVG FT AIEERKDVMGLLHNRLGHVNMKLIKELANDKADFGFNFNMQSLKDYECVPC FT LSAKFKRTTYKRGPRRRKNPLEKLSVDLCGINQDTATGEKMFMLVVDEATR FT YKWCYLLRRKDEAAKLIEELVLRLNTQFKRAGHSVTLVHSDQGGEFVNTYL FT ERFCSSKGIEFKTTNAYSPEENGIVERANGIVLPRLRAVLHATNLPNLLWG FT EATLHIIDTLNLLPTAPLNGKSPHELLFGTAPVLRHLRTWGCLVHAYVPPE FT TRPTRAKLDPRSVLSIFLGYSTTTTGYKLMDLRTGAVTTRRSGNVYFHEKF FT TVANDYIRRLLLNMYFSGDYELVDVIPVVPITSTLEARLFPEAGSAPDVPA FT TTKSTNLPPEKEIGENAEPVGVVAATPGTELQPAAVTNKKKKKRKRQVSSS FT SEQDASNEYQSRCASSPSAEVRSSSPRRVRKVPARLNDYVVGSVMNTTTEI FT PIPNTYKQAKASKYWPEWKAAMEDELSSLRAHGTWKLVARVKTKNQTVITN FT RWVFAVKRDAEGRIQRFKARLVIHGFKQKYGVDYVETFAPVIRFETIRAVI FT LYAVKRGWLVLQYDVKTAFLYGLLSELIYMEQPVGFEENGGQMVCQLIKSL FT YGLKQAPAVWNKTLHTLLEKLGLTRLDSDYGLYAIYNDDGDVTMILSVYVD FT DLLLMGPTTLCTKIAEKLKNEFTLTSMGEVKFLLGIEITIDRTHNKIMYCQ FT RAHIDKILKAYGMQDAYGCWTPQSTSESKANVKAVAPGMKLPYREIVGSLQ FT YLVSGSRPDIAHAVRHLGKYLSCFEHKHYREAQRVLRYLKQTRDHALHLDV FT VSGKDVEVTVYTDSDYANDPDDAKSISGYVTLLDGNVVSYGSRKQGINAQS FT STEAEYIAMNEGVKDILWLDGLLEELRWSAATPLLRGDNQAALYLTAKPGK FT HSATKHIKNKYHLIRHLVEDGQLRTLHVPTDDNTADTMTKPLANAKFTKFR FT KQLKVLPVSSLATATATAEHQH" XX SQ Sequence 5169 BP; 1387 A; 1262 C; 1416 G; 1104 T; 0 other; ggttatgagc ccaacaacag aagcaagcca agacaacaaa cgtaccagtg gtgcggagca 60 gcgacgcgaa ggcgtcaacc agactgcaac aggagcggtg ccctcggggt caaatagcgc 120 cgactctgaa gaaaaagggg aattgactga aaattttaat ccgacgattg gtgaccatca 180 ctctcgggta cctgtgacag tgaaagattc tgtatttcca ttggcggaat caaaagatgg 240 gcaacgctca ttggccaaac ccgcagaaga gaaggagaca gcaaactggc aactgaccat 300 tcgctcatta aaagatcgat cgccttctcc cccagctcga cgagaagaca cctttggaaa 360 tagctccacg agccgcagaa aagctgacac tgaacctgag gacaaaatga atcgagtagc 420 agccgtagtg accctgcagg tggacaaaaa gctctccaag ccggaggatt accccgcttg 480 gcgcctacga gtgcttacag gtctaaatgt ctcaaacatg gcccagcttg tcctaggcaa 540 ggaacccttc aacgacagct ggtcttctag cgtgaaggac tgttggaata gcagatatcg 600 caaagcaaat ggacttcttg tctcggccat ctcagatgaa acccttatcc gctaccagga 660 cgtggtcaac caggctgacc ctgtcgagct atggcgggtg ttagctgagg atttcggcca 720 agggcgaggg gtaaacacgg tgctgatttg ggagcgaatt tacgggcgaa tgcttcgccc 780 agacgagccc gtgcgggact acatcgccga cctactgaag atgcagcgcg aactagcgga 840 aaataatgac cccatctcag actcgcgact cgctaagatt atgctgacca aggctcacgc 900 agtctaccca acgattgcag atgaagttac ggagaagcta cgccgtgatc cagactacaa 960 atatacggtg cgcgacgcac gtggccgtct ggagaatgca gaaatacaac gcaaccagcg 1020 agtgcgtgaa tcaagcagca gcgctgcgaa cagccgtggc ctggccagta aaccccaagc 1080 aaatgctgtg cagcagcacg gtaatagtga aaagggtcct cgccgccagc gcggcggcaa 1140 atatggtcgc aaccgtggct caagtgttgc atctacaaac actggcaagt ctaatgcaga 1200 acggattgcg aaaaagaaaa agaactcgaa gtgcaatgct tgtggtgaga agggccactg 1260 gcgcggtgat gctgagtgca gccaaggacg tcgtcaaacc caaaccaatc aaggtgacga 1320 acaagtgcgc tctctgagtg gagctattct ccggcaacat gaaccgcctg tctcgcgtga 1380 cagggtggta gagtgcatga catctcgtga tgaacatgca gagcacgcag ttggtggaat 1440 tagaaatgat gatcgattga tttcgctgaa cgacgtgcgt tcggtacttg ggctacaagc 1500 agtggagcaa ttggaacagc agcttcatcg ccgaaacaca ggagctggtg gggttactgt 1560 gcgtgctgcg tcgccacagt actcacccac gagtcctccg tcaagccccg ttgttcgcag 1620 ccctacgtac tctcctacaa caccagcgtc tcctgattac gcagtgaatg cagtaattgg 1680 agacgacaag catttccctg ccatgcaggc agatgaaatt gaatggcttc tcgatagtgg 1740 atcgcaagtt aatctgtgcg gagatttgac ttgtttttcg catgtggagc atggaacttc 1800 cagtaacgtg atgatggcct gcggtcagtc agaagtcatg caagcaagcg gaagtgtggt 1860 gttccgtgtc gaaaacggag acacgggcaa gtgggagcct cgccgcctgg acaatgtcca 1920 ctactctcct aatgcccacg tgaacctgat aagcctaggg tacatgcgcg cctgtgggtt 1980 taagcttgtc ttcaacgaag accagagcac tgcgtggctc tgcaaggatg ggttgaagct 2040 gcgcttcgac catcatgacc tgctataccg cctgcgtgcg aagcggtctg tgcgattggt 2100 cggtgctatt gaagaacgca aggatgtgat gggattgctg cacaatcgcc ttggacacgt 2160 gaacatgaag ctcatcaagg agttggctaa tgacaaggcc gactttggct ttaactttaa 2220 catgcagtcg ttgaaggact atgaatgcgt tccttgttta tcggctaagt tcaagcgtac 2280 cacttacaag cgtgggccac ggcggcggaa gaacccgctg gaaaagctat ctgttgatct 2340 ctgcggtatc aatcaagaca cggcaactgg agaaaagatg ttcatgctgg tagtagatga 2400 ggcaacgcga tacaagtggt gttatctgct gaggcgtaaa gacgaagcag ccaagcttat 2460 cgaagaactg gtattgaggc tcaacactca gttcaagcgt gcaggacatt cagtaacgtt 2520 ggtacactca gatcaaggtg gagaattcgt gaatacctac ctggaacggt tctgttcgag 2580 caagggcatt gaatttaaga cgacgaatgc ttactccccg gaagagaatg ggattgtgga 2640 acgggccaat ggtatagtgc ttccaaggct acgagcagta cttcatgcaa ccaatctacc 2700 gaacctgttg tggggtgaag ctactctaca cattatagac acactgaacc tccttccgac 2760 agctccattg aacgggaagt cgccccatga actgctgttc ggcacggcac cggtgctgcg 2820 acacctacga acctggggtt gcttggtaca tgcgtacgta cctcctgaga cccgtccaac 2880 gcgagcaaag ctggacccgc ggtctgtgct ctcgattttc ctgggctata gtactactac 2940 gactggatac aagttgatgg acctgcgaac tggagccgtg actactcgac gcagtgggaa 3000 cgtatatttt catgagaagt ttactgttgc gaatgactac atccgtcggc tactgctgaa 3060 catgtatttc agtggggact atgagcttgt ggatgtgatc ccggtggtgc ctatcacatc 3120 tacacttgaa gctcgactat ttcccgaagc aggtagcgca cctgacgtgc ctgcgactac 3180 caaatcaacc aacctgcctc ctgaaaagga aatcggcgag aatgcggagc cagtgggggt 3240 tgttgcagca acacccggaa ctgagctgca gccagcggct gtgacaaaca agaagaagaa 3300 gaagcgaaag cggcaagtct cttcaagcag tgagcaggac gccagcaacg agtaccagtc 3360 acgatgtgcg agctcccctt cagcggaggt acgaagctca agccctcgca gagtgagaaa 3420 ggtaccagct cgtctcaatg actatgtggt cggttctgtg atgaacacga cgacggaaat 3480 tccaattcct aatacctaca agcaagcaaa ggcgagtaag tattggccgg agtggaaagc 3540 agcaatggag gatgagctgt catcattgcg cgcacatgga acttggaagc ttgttgcacg 3600 agtcaagacc aagaatcaga ctgttatcac aaaccgatgg gtctttgcgg tcaagagaga 3660 tgctgaaggg cgaatccagc ggttcaaagc ccgactggtg atccatggct tcaagcagaa 3720 atatggagtt gactatgtgg agacatttgc gcctgtcatt cggtttgaga ccatcagagc 3780 ggtcatcctg tatgctgtga agcgtggctg gcttgtctta cagtacgacg tcaagactgc 3840 gttcttgtac ggtctacttt ctgagctcat ttacatggag cagcctgtgg ggttcgaaga 3900 aaacggtggg caaatggtct gccaacttat taagtctctc tacggcttga aacaagcacc 3960 tgcagtatgg aacaagacgt tgcatacact acttgagaag ctgggtctca cccgtttgga 4020 cagtgactat ggcctctacg ctatatataa cgacgacgga gatgtgacga tgattcttag 4080 tgtgtacgtg gatgacctcc tgttgatggg accgacaact ctgtgtacca agattgcaga 4140 aaagcttaaa aatgaattca ccttgacgag catgggtgaa gtcaagttcc tgctgggaat 4200 tgagattact atcgacagga cgcacaacaa aatcatgtat tgccagcggg cacacatcga 4260 caagatccta aaagcctacg ggatgcagga cgcctacgga tgctggactc cacagtcaac 4320 cagcgagtcg aaggccaacg tgaaagccgt tgcgcctggt atgaaactac cgtaccgaga 4380 gattgtcggg tcactgcagt acctagtgtc gggctcgcgg cctgacattg cacatgcggt 4440 acgccatttg ggcaagtacc tgtcgtgctt tgagcacaag cactaccgtg aagcccagcg 4500 ggttctccgg tacctgaagc agacacgtga tcatgcactt cacttggacg ttgtttcggg 4560 caaggacgtt gaagttacgg tgtacacgga cagtgattac gctaacgatc cggatgatgc 4620 caagtctatc tcgggctacg tcacgttgct tgacggcaat gtcgtgtctt acggatcccg 4680 gaagcaaggg atcaacgctc agtcgagcac agaggctgag tacatcgcta tgaatgaagg 4740 ggtaaaggac atactatggc tggatggcct attagaggag ctacggtggt ctgcggccac 4800 accactactg cgtggtgata accaagcggc cctctatctt actgcgaaac ctggaaagca 4860 ctcagccacg aagcatatca agaacaaata tcatttgatt cgacatttag tggaggacgg 4920 gcaactacgg actcttcatg tgcctactga cgacaatacg gctgacacaa tgaccaagcc 4980 gttggcaaac gcaaaattca caaagtttcg aaagcaattg aaggtgttac ctgtatcaag 5040 tctagctact gctactgcta ctgctgaaca tcaacactag ctacaaaatc aagtgcaaac 5100 gttcgagcca cttgctaggc tgatcctgcg ggtcaagcta gctcgacgcg cgtctcgaac 5160 gagtggggg 5169 // ID Copia-2_PPa-I repbase; DNA; PLN; 4698 BP. XX AC . XX DT 16-DEC-2009 (Rel. 15.04, Created) DT 16-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Copia-2_PPa-I; Copia-2_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4698 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 567-567 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 578..1774 FT /product="Copia-2_PPa-I_1p" FT /translation="MASSEGESLRVIEKFRGDNFYHWKKKMELLLASLDLW FT DIVDESEDPPSDNADIKVKKEYKRRERKAFGMIASNLDDANFSHVIACNGP FT AEAWKTLCNIYESRNLANILWTRRKFLTVKMEEGDDLMAHVNKVKALANQL FT AVVDKPVDDKDIVLTLLMSLPESYNYLIVALESINMKELTMNYVTSRLAHE FT VTKRKEKELQSDDSALFSRQGKGSYSHQCDNSKSNMRNCYICGKPGHFARN FT CYKAKKGDRENANNASDSFGGDDYAFMANEGASMAAMSKWIIDSGATKHMT FT PYKCSFDTYEEIPATKVWLGDNGMVQAIGIGSIVVEIVVKDQIKRIRLKEV FT LHVPKMKKNLLSVSKLVSHGCKVQFDKNGCFVRHWMDNMLPKALEMAISTS FT SIVKR" FT CDS 1693..4677 FT /product="Copia-2_PPa-I_2p" FT /translation="MFCKTLDGQHVAKGLRDGNLYFINCKKVNGVEVAAFA FT DFPQDQDKFGIWHQRLGHLNAKSMKELQSMVSGLDLGQFSHNAXTLACEGC FT IQGKQQRASFPRGVATRATKLLEIVHSDVCGPMKTPSIGGARYFVTFIDDF FT SRKVWIYIIKAKSECFSRFKEFKALVEKQCECKXKVLCTDNGGEYMSKYFD FT EFLKIQGIARQSSTPYTPQQNGVAERANRTIVEMARSMLHAQNLGHEYWAE FT AVVNAVYTRNRCPTSALTSMTPQEAWSGKKPCVSHMRIFGCIAYAKVPDCM FT RSKLDAKGTKCVFVGYCEGTKAYRLMCLETKKIIKSRDVEFLEHKSAFEHL FT EVCPSGSNGVFVDTSSSSAKKEEEEEDDDDIDDGGNSNQDEEPKKVDHSVP FT SIARTNNEDNEDVEGDDDDEEYQPLSVKRQALRKKKDGMQEDESSSSERRY FT PLRERKQRGEWWKNHIFPQVSEEHANVALLADPLSLCDAMKSTDAMKWENA FT MEEEYKSLMDNGTWELTQLPPNRSSIGCKWVFRTKRDAMGNIVRYKSRLVA FT KGYSQVAGVDFNETFAPVAKFTTIRTIVAIGAAMDLEMHQMDVKTAFLNGS FT LKEDIYMDQPQGFVEEGKQHLVCKLKKSLYGLKQSPRAWYQRIDTFFVNEG FT FVRSEADHSLYVMQSNEFILIVILYVDDLIILTNTMKMMDWLKAKLEKEYE FT MSDLGELHYCLGVEFVRDRAKKTITMSQSKYIEEVLKRFNMEECKPIGTPL FT EANLKLMKLTDEEFAEVEGQMQGVPYKAAVGSLMYAMVGTRVDLAYAVSVV FT SQHMSKAGPIHWTTIKRIMRYLKGTLNFKLCLGGDNISLHGYCDADWAGDA FT NDRRSTMGYVFFVGVGAISWNCKRQPTIARSTMEAEYMAASHGAMEAIWLR FT QLLEDIGVVQMEATPMECDNQGCLAFAKNPKHHSRTKHIDIQHHFIREKIE FT MGVIDMKYCATEDMLADLLTKALVKDRHHMLTKALGLKGI" XX SQ Sequence 4698 BP; 1491 A; 714 C; 1172 G; 1316 T; 5 other; ggttatgggc ccactcacct ttacttgtga gttttgaagt actttgaagt ctttcttgtt 60 gtaaggagta gatcttatgg ttgttgctga agttwgggtt tgttatcttc taatccttct 120 tatgcatcta gttgttgatg tagttttgct cttatttatt gttaagtgca ctcatagtct 180 ttgttgttgt tagactccat ataatgatgt tttagaactc tagtgttata tttctttgct 240 gaaatttatc attggtgttc taactttgtg gtttcatgta cttaacttct taagagattg 300 ttctattttc acaagaagtt tttttgtgag gttagaagta ttttgtgaga aaagaggggt 360 gattgaagag tggcaaagct tatacaagag gttcagatag agtgtaagac ttgtgagaag 420 tcttatatgt gaagttgaga gtgatacaag agtgaaatca cttgtttact tacaaagagg 480 gcattctggg tttctaaggc agcaacacct tcttgttgat tttgagagtt ctatatcttc 540 ttttcttgat tttctttcac acaccccttc cttagacatg gcttcaagtg agggtgagag 600 cttgagagtg attgagaagt ttaggggtga caacttttac cattggaaga agaaaatgga 660 gcttttgttg gcttcattgg acctttggga cattgttgat gaaagtgaag accctccaag 720 tgacaatgct gatatcaaag tgaagaagga gtacaaacgt cgtgaaagga aggcttttgg 780 catgattgca tcaaatctgg atgatgccaa cttttcacat gtaattgctt gcaatggacc 840 agcagaagca tggaagactc tttgcaacat ctatgagagt agaaaccttg ccaacatcct 900 ttggacaagg aggaagttct tgacagtaaa gatggaagaa ggagatgacc tcatggctca 960 tgtcaacaag gtaaaagcac ttgcaaacca actagcagtt gttgacaagc cagttgatga 1020 taaggacatt gtgttgacat tgctcatgag ccttcccgag tcctacaact acctcattgt 1080 ggcattggag tctatcaaca tgaaggagct taccatgaac tatgtcacgt caaggcttgc 1140 ccatgaagtg accaagagga aagaaaaaga gcttcaaagt gatgattcgg ctctattttc 1200 aagacaaggc aaaggtagct attctcacca atgtgataat tcaaaaagta acatgagaaa 1260 ttgctatatt tgtggaaaac caggtcactt tgctagaaat tgctacaagg ccaagaaagg 1320 agatagggag aatgcaaaca atgctagtga tagctttggt ggagatgact atgctttcat 1380 ggcaaatgaa ggagcctcca tggctgctat gtcaaagtgg attatagatt cgggtgctac 1440 taagcacatg acaccataca agtgttcatt tgacacttat gaagaaattc cagcaaccaa 1500 agtttggttg ggagacaatg gcatggtaca agccattgga attggmtcca ttgttgtgga 1560 gattgttgtg aaggaccaaa tcaagaggat cagattgaaa gaagtcctac atgtgccaaa 1620 gatgaagaag aacctccttt cggtgagcaa acttgtatca catggttgta aggttcaatt 1680 tgataagaat ggatgttttg taagacattg gatggacaac atgttgccaa aggccttaga 1740 gatggcaatc tctacttcat caattgtaaa aaggtgaatg gagtagaagt ggcggcattt 1800 gctgattttc cacaagatca agacaagttt ggaatttggc atcaacgact tggtcatttg 1860 aatgccaaaa gcatgaagga gctccaatcc atggtaagtg gcttggatct tggtcaattc 1920 agccacaatg ccwtgacact tgcttgtgaa ggatgtatac aaggcaaaca acaaagggct 1980 tcatttccaa gaggagttgc aacacgtgca acaaaattat tggagattgt gcattctgat 2040 gtttgtggac caatgaagac accatcaatt ggaggagcaa ggtactttgt tacatttatt 2100 gatgatttct caagaaaggt gtggatttac atcattaaag ctaagagtga atgtttctca 2160 aggtttaagg aatttaaggc tcttgtagag aaacaatgtg agtgcaagmt caaagtgttg 2220 tgcacggata atggaggtga atacatgtca aagtattttg atgaattctt gaagattcaa 2280 ggtattgcaa gacaatcctc tactccttac actccacaac aaaatggagt tgctgaaaga 2340 gcaaatcgta ccattgtgga gatggcaagg agtatgcttc atgcacaaaa ccttgggcat 2400 gaatattggg cggaagctgt ggtaaatgcg gtgtatacaa ggaataggtg cccwacaagt 2460 gcactcacat caatgactcc acaagaagct tggagtggca agaaaccttg tgtttcacac 2520 atgaggattt ttggatgcat tgcttatgca aaggtaccag attgtatgag gtccaaactt 2580 gatgcaaaag gtacaaaatg tgtatttgtt ggatattgtg aaggtaccaa ggcatatagg 2640 ctaatgtgtt tagaaaccaa gaagatcatc aaaagtcgtg atgtagagtt tttggagcat 2700 aagagtgctt ttgagcactt agaggtgtgt ccaagtggga gtaatggtgt gtttgtggac 2760 acatcttcaa gttcagcaaa gaaagaagaa gaagaagaag atgatgatga cattgatgat 2820 ggtggaaatt caaatcaaga tgaagagcca aagaaggtag atcatagtgt gccttcaatt 2880 gctagaacca acaatgaaga caatgaagat gttgaaggtg atgatgatga tgaagagtat 2940 caacctttga gtgtgaagag acaagctttg agaaagaaga aggatggaat gcaagaagat 3000 gaatcttctt caagtgaaag gagatatcct ttgagagaaa gaaaacaacg tggtgaatgg 3060 tggaagaacc acatctttcc tcaagtaagt gaagaacatg ccaatgttgc acttcttgct 3120 gatccattga gtttgtgtga tgcaatgaag tccacggatg ctatgaagtg ggagaatgcc 3180 atggaagaag aatacaaatc actcatggac aatggaacat gggaattgac tcaacttcca 3240 ccaaatcgat cttcaattgg ttgtaagtgg gtgtttagaa ccaaaaggga tgcaatgggt 3300 aatattgtga gatacaagtc tagattggtt gccaaaggct actcacaagt tgctggtgta 3360 gatttcaatg agacatttgc tcccgtggcc aaattcacca ccattagaac cattgtggca 3420 attggggcag caatggactt ggagatgcat caaatggatg tgaagacggc tttcttgaat 3480 ggaagtttga aagaagacat ctacatggat caacctcaag gatttgtaga agaaggcaaa 3540 caacaccttg tttgtaagtt gaagaaatcc ttgtatgggc tcaagcaatc tccaagggca 3600 tggtaccaac gcattgatac attctttgtg aatgaaggat ttgtaaggag tgaggctgat 3660 cattccttat atgtgatgca atcaaatgag ttcatattga ttgtcatcct ctatgttgat 3720 gatttgatca tcttaaccaa tactatgaag atgatggatt ggttgaaggc aaagttagaa 3780 aaggagtatg aaatgagtga tttgggagag cttcactatt gtttaggagt ggagtttgtg 3840 agagatcgtg ctaagaagac cattacaatg agccaaagca agtacattga agaagtattg 3900 aaacgattca acatggagga gtgtaagcct attggaacac ctttggaggc caatttgaag 3960 ttgatgaagc tcacggatga agagtttgct gaagttgaag gtcaaatgca aggtgttcca 4020 tacaaggcag cagtgggctc acttatgtat gcaatggttg gcacaagggt ggatcttgca 4080 tatgcggtga gtgttgtgag tcaacacatg tcaaaggctg gaccaatcca ttggacaacc 4140 atcaaaagga tcatgaggta cttaaaaggc actttgaact tcaaattatg ccttggaggt 4200 gataacatta gtttgcatgg ttattgtgat gcggattggg ctggagatgc aaatgataga 4260 aggtcaacaa tgggatatgt attctttgtt ggagtgggag caatttcatg gaattgcaag 4320 agacaaccaa caattgcaag gtcaacaatg gaggcggagt atatggcagc aagccatggt 4380 gcaatggagg caatatggtt aagacaactt ttggaggaca ttggagttgt gcaaatggaa 4440 gcaactccaa tggagtgtga caatcaagga tgtcttgcat ttgcaaagaa tccaaagcat 4500 cattcaagga ccaagcacat tgacattcaa catcacttta taagagagaa gattgaaatg 4560 ggagtgattg atatgaagta ttgtgcaacg gaagacatgc ttgctgattt gttgacaaag 4620 gcattagtaa aggatagaca ccacatgttg acaaaggcat taggattgaa aggcatttga 4680 ccaatagcaa agtgggag 4698 // ID Gypsy-16_PSo-I repbase; DNA; PLN; 9089 BP. XX AC AAQY01000218; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PSo_; KW Gypsy-16_PSo-LTR; Gypsy-16_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-9089 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000218; Positions 57201 48113. XX CC Positions [8045-8278] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 75..1949 FT /product="Gypsy-16_PSo-I_1p" FT /translation="MARTKVVMQPTTRATRNQPATQTQTSVPVPTGGSDLA FT RQDGQNANENEDEEMKENDPGDADNPSDERNDHGADDTQDAPPDEAATSGS FT GDGTAMAPVAALTAALQQMATTIARIDARLDQLSTTVANPAPSPAPADADT FT QTVGTTNPSTQQAPPPAAPRDPPPAATARQVAYQPRDGNDDEDDSDDDDDD FT GSSSSSDDDDESDDGHDGGGRRARRQPVTRPGDRDFHRNRRRAIRDLDLPT FT FLPTPQTSVTTWIARVDLALEGARLSGRGEWTDQELYYILGNKLQDSAARW FT WVQLDRKLRDRERTWTKLKSSLLRRYGERPDKAMAEWRVGQRRMMPGETCA FT DFAAALRDLCGNNRIRERVLLAQVYRSLDRTTIVLVKQRPNPTTLEEAVDK FT ATEISDPIDNVAQGMENIGQAFVTAPDTYVVPVNGTTGQMALIPGVGSTNM FT AEEEKLACFTNSRGVYNKYLGLWEAPKGRVWNGHMWAPVLRKRTAPPAAPT FT TTKRMAMAKTAQKATVNMAVAADADYEEESADDEETDAPRALPPSKKPKLT FT ARRTKAATRQVKAPETPRTKPETALAPRQFGELKCYACNQMGHLARECPDD FT EARARNDEYLTRREQERKRQENEDRAT" FT CDS 4275..5198 FT /product="Gypsy-16_PSo-I_2p" FT /translation="MDFDCGEVRYDERGGMAVIPFMTTAETSDSATAAVRL FT ARATNLHRRAVQTVEVAIAAPVGEEGVFLPTVNNGAVLLASAVTKVTNGKA FT MIPAINTYGGRIKLPSRKELGVWIPINQDIELLAMHGELDSERVNTWLDEL FT GDADTPLDDEHDVDIGMEEPGARALILKLLRAYRDLANAQDECPPATMLNV FT EHHIDTGNAAPIMMRRRRQAQTEDAIVDSNVDSMLSAGVIEHGEGAWGFPV FT VLVRKKDGSVRFYVDYRALNSVTRKDVYPLPRIDETLESLGGARLFTTLDL FT RCRFVWRKRTAIRRPS" FT CDS 6720..8195 FT /product="Gypsy-16_PSo-I_3p" FT /translation="MTTERQHPVKTARQLAGTTVTATTGRKRVKKAAKPAT FT RRSERLREREQRHARWATTVTNADDASSPAQSTERDAPTETTGATTTTVAT FT APRTTPGATLPTTTTAPRDQDAAVSGARTVRDDGRHAAATPTRTPATSTPR FT TQRTTPADQGTAETRAKAPAVTPTPARTTLTAVTKRKPSTKGAANTKTAGK FT TSVTTMNSTAAKGTTNGAVTMTNDVMMVTSGADGMGGDEESAPVDDYTLQL FT SDDELVTAQQRSKFVKRLVADGKYGSMPIANEYGLVTVDTPNGRRVVLPPT FT LWAAVFKEMHGSVWSGHLRGPHTYGRVAQLYWWPGLYREVRRWVRGCPECG FT SRKAKPHEVIPPLRSLRGGAVGDRWALDVAGPFPAADGGDRYVIAAVEYVT FT RYAVASCVTEHTAETVATFIMQEVVLRFGVFRELLTDGAPELAGKVIEELV FT QLLQAHQVNPYRTDLNSLDLWSAFIARGRTAWQRSCKTNDKSIGIFG" XX SQ Sequence 9089 BP; 2083 A; 2433 C; 3020 G; 1553 T; 0 other; tggtggtcat acaggggtct agtgtacgta tccgacgcag ccctcgactt acgaagacac 60 ccgaagacgc tcagatggct cggacgaagg tcgtcatgca acccacgacc cgtgcgactc 120 ggaatcagcc ggctactcag actcagacgt ctgttcccgt gcctactgga ggatcggatc 180 tggcgcgaca agacggtcag aacgcgaacg agaacgagga cgaagagatg aaggagaacg 240 atccgggcga cgcagacaac ccaagcgacg aacgcaacga ccacggcgct gacgacacgc 300 aggacgcgcc acccgacgaa gcggcaacta gcggcagcgg cgacggcaca gcgatggctc 360 ccgtagcggc gctgaccgct gcactgcagc agatggcaac gacgatcgca aggattgatg 420 cgagactgga ccagctgagc accacagtgg ccaaccccgc gccgtcccct gcgcccgcgg 480 acgctgatac gcagacggtg ggaacgacga atccgtcgac acagcaggca ccgccacccg 540 ccgcaccacg ggaccccccc ccagcggcta cagctcggca ggtggcctac cagccacgtg 600 acggcaacga cgacgaagac gacagcgatg atgacgacga cgacgggtct tcgagcagct 660 ccgacgacga cgacgaatct gacgacggcc acgacggtgg aggacgccgt gccagacgcc 720 aacccgttac gaggcccggt gatcgagact ttcaccgcaa cagacggcga gccattcgag 780 acttggactt gccaaccttc ttaccgacac cacagacatc tgtgacgacg tggatcgcgc 840 gcgttgacct ggcactcgaa ggagcacgac tatcaggacg gggcgaatgg actgatcaag 900 aactgtatta catcttaggc aataagctac aggacagcgc tgcccgctgg tgggtccagc 960 tggatcgtaa actacgcgac cgtgagcgaa cgtggacgaa gttgaagtcg tcattgctgc 1020 gacgatatgg tgagcgcccg gataaagcaa tggccgagtg gcgtgtcggc caacgtagga 1080 tgatgcctgg agagacgtgc gcggactttg ctgctgccct tcgcgatctg tgtggcaaca 1140 accgaatccg ggaacgtgtg ctgctcgcac aggtctaccg cagtctggat cgcacgacga 1200 tagttctcgt gaagcagcgt ccgaacccga cgacactgga agaagctgtg gacaaagcaa 1260 cggaaattag cgacccaatc gataacgtgg cgcaaggcat ggaaaacatc ggacaagcgt 1320 tcgtcaccgc acccgatacg tacgtcgtac cggtgaatgg gactactggg cagatggcgc 1380 tgatccctgg cgtcgggagc accaacatgg cggaagaaga gaagttggcg tgcttcacga 1440 actcgcgcgg cgtgtacaac aagtacctcg ggctgtggga ggcaccgaag ggacgtgtct 1500 ggaacggaca catgtgggca cccgtactgc gaaaacgtac ggctccacca gccgcaccga 1560 cgacgaccaa gcgcatggcg atggcgaaga ctgcgcagaa ggcgacggtg aacatggcgg 1620 tcgctgccga cgctgactac gaggaagaga gcgccgacga cgaggagaca gatgcgccac 1680 gcgcacttcc accttctaag aagccgaagc tcacggcccg acgtaccaag gctgcgacgc 1740 gccaagtgaa ggcgccggaa actccgagaa cgaagcctga gacggctctg gcaccacgac 1800 aattcggcga actgaaatgc tacgcgtgca accagatggg gcatcttgcc cgcgagtgtc 1860 cagacgatga ggcgcgcgcc cgcaacgacg agtatctcac tcggcgtgag caagaaagaa 1920 agcggcagga aaacgaggat cgagcgacgt agggggatca cggcgctcgg caatacgacg 1980 gactccccag cgacccgtga cggtgacggt ggacggtgat acggcgtgcg acacgaacgc 2040 accgacggtg ccggcggcgg tgaccgacgg cgggagcaag atggtgaacg gcatggacgt 2100 gccagacgac aggagcgtgg cagtagtgag acgggctgtc gcggctcaat tggacgaaga 2160 gctctcggct cgcgatgagg ggcgagcaga gcggtacgtg tgcacagtgc gtccagcaat 2220 ggcagcgctg cgttacgtgc acaagacgga tggagaaggc ggcggcgtcg cgacggtgaa 2280 ggattcgacg ccaacggcga cagccacccc tgctcgtttc gaggaggtgg cagcctctga 2340 ggaaggcggc aaggcggcaa agcggcatac ggcgtgcagt tcgctgagga aggcgccgca 2400 gagacgacgg tggcgagcgt gacgcctacg acgggcgacc agctgcccga tgacgtggtc 2460 gaagctgagg aaggcgatgt gtcggccata gatacgacga ggaagggcga gatggaggac 2520 ggagagtcct tagcgctcga gctcggcgtg gagctcacgg acgagacggt gatggagctc 2580 ggcaccgtgg cgaaggtggg catggccgtc aagcgatcga agcgcgaagc gtagaagcag 2640 cgtgtgcagc gtgcgcgtga gaaggcggcc aagagcatgt gtgacgatga agaagtcgcg 2700 cgtgttgtcg ctgagctcga cgctgagcgt gaagagtggt ggcagcggca agctgaagga 2760 gcgcgcagtg cactggaagt acgacggcag cgacgagttg ccggtggtga agacgaagtg 2820 ggcgagcgag ctcgtgtgaa cttggtgcag cacgggggca ccgtggcggc cgagaatgat 2880 gatgacgata gcggcgtgag tatggaggcc agtggcggac tgccaacagc tgcaatgttg 2940 gtgggcggcg tgcaacagta tgtcaagatc gacggtggcg cgcgctactt cgtggcgggc 3000 acgaaatgga tggcacgcgg tgaacggaag caggtggacg cccctgtgat gtacgtggag 3060 ggtatcggcg gttttttgct ggacgtgttg ggcgtgtgga cgttcagcat ggcgaacgtg 3120 tacgagcaga tggagtggcg tagcgggatc agcaaaatct gggagattac caatccaact 3180 taccaactgc gcccgaacac cgacttacgg agggggtggc ccccgatgat ccgtgatctg 3240 tgtgctgaac tgatcacctt gtgtacccgt cggtagggct ggatctgctc ctctggtgtc 3300 tgctgaagcg ttctagcctt gaaatcagaa cagtctgggc gagacgcggg gatgtgggtg 3360 gagcagcgcg gaaatcttca ctctgctcgc ggtagtattc caattccagt ggtcttgtac 3420 ctggatctgg cgacctggat ctggatccgg ccgtggggtt gcctttgggt tgttgttgtt 3480 cctttccttt gcctttgcag gtcttccttt gttgtacttg ccgcttcctg tagcgggatc 3540 cgtagatgtt gagagtcgag gatgcacccg gccaagtagt aactccgggt ggatcgggga 3600 tctgcacttg caagtaggtc actaggaagg ttgtagaact ggccaatgta ttatccagtc 3660 tagatcaact accagaacct tgcaaaaccg tggggcctat gtacttcccg tttccaggcg 3720 aagccgaagg cacttgcgat gtataaggca aattcgagtc tgctttatgc ttaagcccaa 3780 tcccatccca aagtcctatc ttgctataga tcctatcatc ccatctgtat ctactgactc 3840 tatggggctt gattatcttc cttgcgtgcc gctagattgc ctccgtcgag ccataacctt 3900 agatccaccg ttcaatccca tctgagtccg aatcagaatc agatctggat tggatcggat 3960 cgccgatcca cttgacagct gcatctcttg gatcttgggt ctcgaggcat tgcgttgctt 4020 gggcacacat tcgtgacgtc cggtcgcact cgtagtgtct tccgttgcaa tttctaacat 4080 ctggtacggg gcccgatccg ccagtctggt ggatccgtcg cggagtctgt atccatcatt 4140 ctgccgatct ccctttgttc caatttcttg gatcctgctt ctccacagtg gtgactatcg 4200 acgcatgcat cgtcgagggg tgcaccagcg aattcctcgt gggcgtggac ttcctcgagg 4260 gtcatcgggc gacaatggac ttcgactgtg gcgaagtgcg ctacgatgag cgcggcggca 4320 tggcggtcat tccgttcatg acgacggcgg aaacgagtga ctcggcgacg gcagctgtga 4380 ggctggcccg tgccacgaac ctacaccgac gtgccgtgca gacagtggag gtagcgattg 4440 cagcaccggt tggcgaggaa ggagtgttcc tgccgacagt gaacaacgga gcggtgctgc 4500 tcgcgtcagc agtgaccaag gtgacgaacg ggaaggcgat gatacctgcc attaacacat 4560 acggtggacg catcaagttg ccgagcagaa aggagctagg tgtatggata cctattaatc 4620 aagacattga gctcttggcg atgcatggtg agttggactc ggagcgtgtg aacacgtggt 4680 tggacgagct gggggacgct gacacgccct tggatgacga acacgacgtg gacatcggta 4740 tggaggagcc gggcgcgcgt gcgctcatcc taaaactatt gcgtgcctat cgagacctgg 4800 caaacgcaca agacgagtgt ccgcctgcaa cgatgctcaa cgtggagcac cacattgata 4860 ctgggaacgc tgctcccatt atgatgcgcc gacgacgcca agcacagacg gaagacgcta 4920 ttgtagatag taatgtcgac tctatgctgt cggcaggtgt aatcgagcat ggtgaaggcg 4980 catggggttt tcccgtagta ctcgtacgga agaaggacgg ttccgtgcgg ttctacgtgg 5040 actacagggc cctgaacagc gtcacgcgca aggacgtcta cccgttgccg cgaatagatg 5100 aaacgctaga gtctttgggc ggagcacgtc tgttcacgac ccttgaccta cgatgcagat 5160 tcgtgtggcg gaagaggacc gcgataagac ggccttcatg acgaagagag ggttgtaccg 5220 atttcgacga acgcctttcg gccttaccaa cgctcctgct acttttcaac ggctgatgaa 5280 tggagtgctt cgcggtttga gatggctgac ctgtttggtg tacttagacg acatcattat 5340 cttcacgaag ggtggtatcg aacggcatgt gattgaacga gcgggtgtat tcgagagatt 5400 aagggcagct ggcctaagtc tcaagctgaa gaagtgtacc tttgctacga cttcaatgga 5460 gtacctgggc caccatctga gtgaccaggg cgtgcagccc gctgagcggc tggtgaaatc 5520 tgtgcgggaa ttcccacgac ctacggacgc tactgaggta aagaggtttg tccacctcgc 5580 cggttactac cgtaagttta ttgcagcctt cggctcgatc gtggagccga tgactcgctt 5640 gttgaagaag gacgtgcagt gggaatggag tgaggcgcag gagttcgcgt tcgaacgtgt 5700 gaagatgtta ctcactacgc gacctttgct gctctactct aattttgaac tacccttccg 5760 cctggtgacg gacgctagta aggttggcct gggggcctgc ctcatgcagg atcacggacg 5820 cggctggcag ccgattgcat atggcagtaa agtgaacagt aaggcggagt cgaactactc 5880 catcactgag ctcgaatgtc tcgctgtggt ctggtccgtg aagatgttcc gaccctacct 5940 gtacggcaga gccttcacga tcatcacgga ccacgccgca ctcaaatggc tcatgactcg 6000 accgaacatg gccggatgat tgcatcggtg gtcactagta ctacaagaat atgagtttca 6060 ggttgagtac cggcctggtt cgacgaacgt agtagcagat gccttgtccc gggcacctgc 6120 agccgtcaga gcagcggtag gacggcagca acggcgccca acgacgccaa ggacgacgga 6180 tgcgaataat acgacgaatg cgggcgaggt aacggcgaca gctccgccga caagcactgc 6240 agtggcggag acgacagcag ctaacgccac aatgacgacg aacgacgaga tgatggcggt 6300 cgcgtcagcg gcgacgccac cgagcggtgc ggcaagccgg gcagccacca cgaacgggac 6360 gacgggcggg atggcgcccc agatgaccga caagacgccg ggcaccacga tgctgacgga 6420 cgggaatatg gttccagcag cagctgtggg tcagacacgc gagacgacgg gcgagacgac 6480 ggacaagacg ccgggagcga cgacagatca gctgacggat gagatgacgg cgggtggcga 6540 catggtgcgt gccgtcacca cggccgaagc agatgccagg acgacggcag cggcaggggt 6600 agcgcggctg tcgatggatg aagcgacgcc gacggatact acggcagcgc caaacgtcac 6660 gacagcgagc acgacggatg gcacccggac gacgatgatc gagaggacgg tgacgggcaa 6720 tgacgacgga gcggcagcac ccggtgaaga cagcgaggca gctggctggc accaccgtga 6780 ctgccacgac cggccggaag cgcgtgaaga aggcggcgaa acctgcaacg agacgcagtg 6840 agcgcctccg cgaacgcgag cagcggcacg cgcgttgggc cacgacggtg acgaacgcgg 6900 acgacgcgag cagcccagcg caaagtactg agcgagacgc acccacggaa actacgggag 6960 cgacgacgac tacggtggct acggcgcccc ggacgacacc aggagccacg cttccgacga 7020 cgacaactgc cccacgtgac caggatgcag ccgtatcagg tgctcgtaca gtgcgagacg 7080 atggacgcca tgcggcagcc actccgacac ggactccggc gacgagtacg ccacgtacgc 7140 agaggacgac acctgctgac caaggtactg cggagacgag agcaaaggca cccgcggtga 7200 cgccaacgcc ggcgagaacg acactgacgg cggtgacgaa gcggaagccc tcgaccaagg 7260 gcgcggccaa cacgaagacg gcgggcaaga cgtcggtgac gacgatgaac tcgacggcgg 7320 ccaagggcac gacgaacggc gccgtcacga tgacgaacga tgtgatgatg gtgacgagcg 7380 gcgcggacgg catgggcggc gacgaggaga gcgcccctgt ggacgactac acgctccaac 7440 tgagcgatga cgaactggtg acggcgcagc agcgcagcaa gttcgtgaag cgtctggtag 7500 cagacggcaa gtacggcagt atgccgatcg cgaacgagta cggcctggtg acggtcgaca 7560 cgccgaacgg acggagagtg gtgctgccac cgacactttg ggcggctgtc ttcaaggaaa 7620 tgcacggcag tgtgtggagc ggacacctgc gcggtcctca cacgtatggc cgcgtagccc 7680 agctgtactg gtggccggga ttgtaccgag aagtaaggcg atgggtgcgt ggatgccctg 7740 agtgcgggtc ccgaaaggcg aaaccacatg aagtgatacc gccgttacga agtttacgcg 7800 gtggtgcggt gggagatcgt tgggcgctcg atgtcgccgg acccttccca gcagccgacg 7860 gaggtgacag gtatgtcatc gccgccgtcg aatacgtaac gaggtatgct gtggcgagct 7920 gcgtgacgga acatacggct gagacggtgg cgacgttcat tatgcaggag gtggtgttac 7980 ggttcggggt attccgtgaa ctgctgacgg acggagcgcc ggagctggct ggcaaagtga 8040 ttgaggagtt agtgcagctc ctgcaagctc atcaggtcaa tccgtaccgt accgacctca 8100 actcgttgga cttgtggagc gctttcatcg ctcgtggaag gactgcgtgg caacgttcat 8160 gcaagacgaa cgacaagtcg attggaatct ttgggtgaaa ttcgctgttt attcttacaa 8220 ctcggcaaag cattctactg tggcactgag cccgaaggag cttatgatgg gacgacggct 8280 gagggctccc aacgaactgc tgagacggac ggaggtgacg gaagcgggcg agctgccagc 8340 ttaccacgcg aacctggtga aagcgatgga acggagtcat gagtgtgcag agcatgctcg 8400 acgacgcgag caagaacggc aggctcggta ctataatcgg aagactcgga acaggcggca 8460 gtttcaggcc ggcaatttgg tctggatgca caacccgccc cgtggcaaga acgccacgaa 8520 gttcgtgcac cagtggatgg gaccactacg gatcgtggaa cctgctgggt acgacaactt 8580 cgtgctgacg cgtgaggata agacagggaa ggcttagacg ttgatctccc acgtgtcttt 8640 cctcattagt tatcattatc ctgaagcact actagcgcag attgcgcgcg acattgacga 8700 gcagctcaac gatgaagaac agcggccaac gcgggatgaa ccggagacag cagcggctgt 8760 acggtcagcg aaggcgccag ctgggcgaac gacgagagct ggaaactcga aacgaacgcg 8820 agcagcagtg gatgacactg gtgtgcgcga cgtcacgcgt ggactcgtgg tggggcgacg 8880 gagaaggcga cggcgcaacg gagccgggca gtacgtgctc gagtacgagc tgtgtccgtg 8940 cagtgaccca cgacgatggc tgacgggcga cggtgagcta tgactcgacg cagatggacg 9000 cccacgagca cggtggacgt cggtggctca atacgaacga ctctacatgg acgcccgggt 9060 cgtggaagac cttgggtatg cggacgacg 9089 // ID Copia-12_PR-I repbase; DNA; PLN; 4135 BP. XX AC AAQX01002942; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PR_; KW Copia-12_PR-LTR; Copia-12_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4135 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002942; Positions 4764 630. XX CC Positions [1371-1901] - Integrase core CC 'CTGCT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 45..4118 FT /product="Copia-12_PR-I_1p" FT /translation="MTTTSAKKAEVVLGSDNYFHWEFAMRMTLARKGLLAH FT VQLVKDPSEMTDAWLLNDMKALGLIAQGVAVEHHTKIRSATSAIMAWNTLR FT DFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEPLD FT EARQLVILLSSLPTEYELICSIVENAKDFTLIEVKEKLLKEYERLDKKEGA FT ERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKR FT DCPDPNAGNNDDDAVFAVGKSRSAAWLIDSGATAHMTPHRNDLFEYKDLDS FT DVEVTIADGKKIRVVGTGSVRLTGIDGTRIKMIDVLFIPGLDRQLLSVSRL FT AERGMIVEFQKKSCTIWNKSKAIALGKKVGKAYMLDCEKDMAHYVEYAGVD FT SEWELWHARMGHLNKDALAKTQRATTGMPTLDHKSMTICGGCMKGKQTVAH FT FPSRSLSKTTKVLQLVHTDVMGPMKTKSKGGARYVLTFVDDYSKYIVAYFI FT TKKSEVPVKFKTFMNLYENQWGERIKCLRSDNGTEFVNKEMDRLCALNGIV FT HQKTVPYSPQQNGVAERMNRTIMEKARSMLYYKGITTMWWAEAVSTSVYLI FT NRSTTSTHSSMTPHELAFRDKPRLDHLRVFGSVGYAHVDKAKRTKLEPKSF FT KCMFLGYAENSKGYRVYDLESNKVKVTRSLKLDEREVDGIYESTPTESTTD FT IHSTEDVDEVVQLEQEQQSATQAPVGSVEDNHEEDAAMPEAESDDSMRHGL FT TTYRTTPGADFSDDLVFHPERERVRRPRDLILALEDEYKVNDEEDPNNDDH FT FWPPSPKRARVDEDGLLAEAVLAYAASVGDADDAPTTYQQAMKSNEASKWI FT KAMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARL FT VAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLN FT SDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIG FT FHSCGADQCVYVKGTKDNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFK FT MKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPC FT ESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQL FT SRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGS FT NLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLW FT TRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIREN FT VARDIILVGYVGTEDQLADMLTKALGTKRLTFLVKASGICTKLAHH" XX SQ Sequence 4135 BP; 997 A; 1099 C; 1350 G; 689 T; 0 other; ggttaacagc cgcaagacgc tcaagaccaa gcttcactac cgccatgacc accacgtccg 60 ccaagaaagc cgaagtcgtc ctgggaagcg acaactactt ccactgggag ttcgccatgc 120 ggatgacgct ggcaaggaag gggctgttgg cgcacgtgca gttggtgaag gacccgtcgg 180 agatgacgga tgcgtggctg ctcaatgaca tgaaggcgct cgggctcatc gcccaaggcg 240 tggcggtgga gcaccacacg aagatccgct cggcgacgtc ggccatcatg gcctggaaca 300 cgttgcgcga cttctacaac cggacgacca tgcacaaccg ggtgacgatg acccgtcgcc 360 tccacgagtt caagatggag ggcggcgtga ccatggccaa gcacctggac gacttcgacg 420 agctcatcgt gggtctgcag acgctcggag aaccgctgga cgaggctcgt cagctggtca 480 tcctgctgag cagtttgccc acggagtacg aattgatctg ctcgatcgtg gaaaacgcga 540 aagacttcac gttgatcgag gtgaaggaaa agctgctcaa ggagtacgag cgcctcgaca 600 agaaggaagg cgctgagcgt gcgctaaagg ctactgcgaa cggcagtaag ttcaggtgcg 660 cgaagacctt caggggtggc aagggcagca aggccttcgg ttcaaggaag aacggcggct 720 tcaagggcaa gtgcttcaac tgcggccagg tgggccacat gaagcgggac tgccccgacc 780 cgaacgcggg caacaacgac gacgacgcgg tcttcgccgt tgggaagagt cggtcggctg 840 cgtggctgat tgacagcggt gcgacggcgc acatgacgcc tcaccgcaac gacttgtttg 900 agtacaagga cctcgactcg gacgtcgagg tgaccattgc ggacggcaag aagatccggg 960 tagtgggaac ggggtcggtg cgcctgacgg gcatcgacgg cacacgcatc aagatgatcg 1020 atgtgttgtt catccccggg ctggaccggc agctgctatc tgtcagcagg ctggcggagc 1080 gcggcatgat cgtggagttt cagaagaagt catgcacgat ctggaacaag tccaaggcga 1140 tcgcgttggg caagaaggtc ggcaaggcct acatgcttga ctgcgagaag gacatggcgc 1200 actacgtgga gtacgccgga gttgacagtg agtgggagtt gtggcacgcg cgcatgggcc 1260 acttgaacaa ggacgcgctg gcgaagacgc agcgcgccac cactggcatg cccacgttgg 1320 accacaagtc catgacgatc tgcgggggtt gcatgaaggg caagcagaca gtcgcccact 1380 tcccgtctcg atcgctgtcg aagacgacga aggtgttgca gttggtgcac acggatgtca 1440 tggggcccat gaagacgaag tctaagggcg gggcccggta cgtgctcacg tttgtggatg 1500 actactccaa gtacattgtg gcgtacttca tcaccaagaa gagtgaggtg cccgtcaagt 1560 tcaagacgtt catgaacttg tacgagaacc aatggggaga gcgcatcaag tgcctgcgct 1620 cggacaacgg cacggagttc gtcaacaagg agatggacag gttgtgcgcg ttgaacggga 1680 tcgttcacca gaagaccgtc ccttacagcc cgcagcagaa tggcgtggcg gaacgcatga 1740 accgcacgat catggagaag gcgcggagca tgctgtacta caagggcatc acgacgatgt 1800 ggtgggccga ggcggtcagt acgtcggtgt acctgatcaa ccggtcaacg accagtacgc 1860 actcgagcat gacgccgcac gagttggcgt tcagggacaa gccgcggctg gaccacttgc 1920 gcgtgttcgg ctcggtcggg tatgcccacg tcgacaaggc aaagcgtacc aagttggagc 1980 cgaagagctt caagtgcatg ttcttggggt acgccgagaa ctcaaagggc tatcgcgtgt 2040 acgacttgga gtcgaacaag gtgaaggtga ccaggtcgct gaaactcgac gagcgcgagg 2100 tagacggcat ctacgaatcg acgccgacgg agagcacgac agacatccac tcgacggagg 2160 acgtcgatga agtcgtacag ctcgaacaag agcaacagtc cgctactcaa gcaccggtgg 2220 gatcggtgga ggataaccat gaggaagacg cagcaatgcc cgaggccgag tcggacgact 2280 cgatgaggca tgggttgacc acataccgaa cgacgccggg ggcagacttc agtgacgacc 2340 tcgtcttcca cccagaacgt gaacgagtcc gacgtccacg tgatctgata cttgctctcg 2400 aagatgagta caaggtcaac gacgaggaag accccaataa cgacgaccac ttctggccgc 2460 cgtcgcctaa gagggctcga gttgatgagg acgggcttct cgctgaagct gtcctagctt 2520 acgctgccag tgtgggagac gccgacgacg cgccaaccac gtaccagcag gccatgaaga 2580 gcaacgaggc gtcgaaatgg atcaaggcga tgaactccga gttgaaggcg cacgcagaca 2640 acgggtcatg gactctggtt cgacggacgt ctggcgcccg gccgattggg tgccgatggg 2700 tgttcgccaa gaagcggaac gagcacggca gagtcgtgcg gtacaaggcc cggttggtgg 2760 cgaagggctt caagcagaag ttcggcgtgg atttcttcga gacctactcg cccgtcgcca 2820 acatgaactc gatcagagtt gtgctgtcgg tggtggtggc gaaggcctac gtcacagagc 2880 agctggacgc ggacacagcg ttcctgaaca gtgacttgaa ggaacaagtt ttcatggagg 2940 taccgtacgg catcctaaac gcggaacaca tgatgtgcaa gctggacaag gcgatctacg 3000 gtctgaagca ggccgcgagc gcgtggcacc agacgatcca cgcggtgttc atgaagatcg 3060 gctttcacag ctgtggagcc gaccagtgcg tctacgtgaa gggcacgaag gacaactacg 3120 tgtacgtctg cttgtacgtg gacgacatga tcatcgccgc caagaccaac aaggagatcg 3180 atgaggtcaa gatggcgttg aaaagcgcgt tcaagatgaa agagttgggc gaggtcaagt 3240 tcatcctcgg catggagatt gaccacgacc gcacggccag cacgttgatg atcaagcaga 3300 cgcgctacat cgacgatgtc acaagtcggt tcaaccaaca ggacgcgaag gcggtggtga 3360 acccgtgcga gtccggcatg aagttgacga agatgcagtc gccaacaacg aacgcggagc 3420 gcgaggacat gaggaacaag ccgtacagat cgctgatcgg atgcttgttg tacatcacga 3480 cctgcacacg cccggacgtg gcatacattg tcacgcagct gtcgcggttc ttggagaacc 3540 ctgggcagca gcattggaag gccgccatac gcgtgctgcg ctacctgaaa accacgaagg 3600 agttcgggat cgtctacaac ggcaacaacg gcaaggtcgc aatggaggcg tacacggacg 3660 cggactgggg cagcaacctg gacgatcgcc gctcggtgtc cgggatcatg atcatggtcg 3720 gcggcgcacc agtcatcttc aagtcaaagt accagcggac ggtggcgctg agctcggcgg 3780 aggcggagta catggcgttg agcctgtgca cacaagaggt gctgtggacc cgcacgatgc 3840 tcaaggacct gggtcatgaa caagtgggag caacgcaagt ctgggaggac aatcaaggtg 3900 ccattgcact ggcaagcaac gccggctata atgcgcggac caagcacgtc gacattaggc 3960 accacttcat ccgcgaaaac gtagcgcggg acatcatctt ggtgggctac gtcgggacgg 4020 aggatcagct cgcggacatg ctcacgaagg cgttggggac caaacgtctc acgttcctgg 4080 tcaaggcgag cggtatctgc accaagctcg cgcatcacta gacggcgagt gggag 4135 // ID Gypsy-19_PR-LTR repbase; DNA; PLN; 603 BP. XX AC AAQX01002269; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PR_; KW Gypsy-19_PR-I; Gypsy-19_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-603 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002269; Positions 1475 2077. XX SQ Sequence 603 BP; 145 A; 153 C; 193 G; 112 T; 0 other; tgtcacgagt gaaaatggag gtcaccgtct tgggcacggt tctggccgtc ggcaggatgg 60 gtcaacactg acgcaacttg aagaagcaga gagacagggc ggtcatcagg cccggtctcg 120 gattccggaa gggtacgacc ccaaccgggt cgattactat tggtagaaat gaggtatgtg 180 ggacaaggga acgatcaaca gtggctttga gcctgcccgg ccccacaacc gatctggcgg 240 cgtcggcggc actctgcaga gaagcagcgg ccggacgggt gacacgaccc gtcggcccca 300 agccaaagga actgaagaag actaaggaaa aggacaagaa ggagaagggg tgtcgcgcgt 360 gcagtcatca cgccgcgtga gatgcgctgg cggtctgcag atgactcgag cggtcaggga 420 gcaggcttgc tctcgccgag aaggtaagga agaaggatca gtcgtgaatt tacccggaaa 480 ccaacgtaac aagctgtatt tttgcattta cggtttgctt gcgtctgttg ttacgactcc 540 tgtctagctc ctcgcttcta tacggcacgg ttgaaccgtc ccattccggg acgactcgcg 600 aca 603 // ID Gypsy-5_SMo-LTR repbase; DNA; PLN; 387 BP. XX AC ADFJ01000343; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SMo_; KW Gypsy-5_SMo-I; Gypsy-5_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-387 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000343; Positions 83342 83728. XX SQ Sequence 387 BP; 75 A; 115 C; 68 G; 129 T; 0 other; tgtcaggaat cccccaattc ttgccacatt cctgactctc gccggattcc tgacctgcag 60 accacattcc tgactctcga gacacttctc tattcctgac tctcgagaca cttccctatt 120 cctgactctc gagacacttc ccgattcctg agtctcgagc cacattcctg atgatgatgt 180 ggcgcctcct cgacctcagc tgtatttagg ctgtcctcga tccaagagtg gtggagcttc 240 atcaacctat agtatatata ggttagcctt gttccatttc tccacaatct gaatcaacac 300 cagtctaagg cctcttcttt gttttcacta gctttttctc tttgtcttta gcattttcca 360 gtcttgatct tgttgggggt cttgaca 387 // ID Gypsy10-LTR_VC repbase; DNA; PLN; 389 BP. XX AC scaffold_37; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy10-VC; KW Gypsy10-I_VC; Gypsy10-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-389 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 138-138 (2008). XX DR Genome; scaffold_37; Positions 1344080 1344468. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 389 BP; 84 A; 102 C; 81 G; 122 T; 0 other; tgttgtggca cacttgcata ttaaccctcg gatctttccc caattctctg gcactttgcc 60 gctgggcaat atcttcgctc ttacttggtt aaccattggg cacttgccta tctctaattg 120 ggcgctggcc catctttaag cgggcacttg cctgtcttta tcacgcgtga tactggatta 180 tagcgctctt gctataatcg tgacacttgt cactggtaga cccacttggg ttatgattgc 240 accgattggt gataactcgc gttgacgact atatcttcag accgtacaga cttctgtacg 300 ggtcatccta acgcagaggc atttagcctc ttctcattca ctaatcggta gttttcacta 360 ccacctaaac agtggaagtg gatacaaca 389 // ID Gypsy-35_PIT-LTR repbase; DNA; PLN; 239 BP. XX AC AATU01001085; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_PIT_; KW Gypsy-35_PIT-I; Gypsy-35_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-239 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001085; Positions 38334 38572. XX SQ Sequence 239 BP; 71 A; 67 C; 48 G; 53 T; 0 other; tgacataact gcctgcctac gtggatgaag cctgtggcgc cttgcaagaa taagaagacg 60 agaagatcca ccacagccag gtttgaaaat ctgaatgctg tagttcgaat atttaaacta 120 gacgaggcgc ctcccgctca cccacatata tatagtcact ttcctttttt cctcaagaag 180 accaagtcaa ccacaaaacc caagattcgt cgcgaccctc tgctagccaa ggcgcgtca 239 // ID LTRYL1 repbase; DNA; PLN; 273 BP. XX AC AJ439559; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Yarrowia lipolytica Ty3/gypsy-type retrotransposon LTRYL1, long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; LTRYL1; KW Long terminal repeat; Ty3/GYPSY superfamily; retrotransposon. XX OS Yarrowia lipolytica OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia. XX RN [1] RP 1-273 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439559; Positions 1 273. XX SQ Sequence 273 BP; 83 A; 49 C; 60 G; 81 T; 0 other; tgttgaaggt aatacccggt ggggtaatac ctggctaatt cctcacataa tgatgagatg 60 tcaccacata gtaataagag gaatcagctg ggtcgtagaa gagatgtcca tcctgtagat 120 agttttatcc actgatctag aatctctttt ctggtgaatg agcaagcaca caccagaagg 180 gtgtgtgcta ctatcggaac gtcgtgtccc tagaagtggg ttgtaagttg ttaattaact 240 atatcacatc aataatactt ataatcttca ata 273 // ID Lueckenbuesser_I repbase; DNA; PLN; 4233 BP. XX AC U90320; XX DT 06-MAR-2006 (Rel. 11.02, Created) DT 06-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Volvox carteri f. nagariensis retrotransposon Lueckenbuesser DE (internal portion). XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Lueckenbuesser_I. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4233 RA Koehl G., Putz E. and Schmitt R.; RT "Lueckenbuesser."; RL Direct submission to Genbank (2005). XX DR EMBL/GenBank/DDBJ; U90320; Positions 186 4418. XX CC LTRs are identical, ORF appears to be intact. XX FH Key Location/Qualifiers FT CDS 142..3042 FT /product="Lueckenbuesser_I_1p" FT /translation="MAEQSKRVPKLESIADYPQWEPRARNALILDGYWDVV FT NSAPITSVEKGLMAKAALIMMVGDKFLQEIDQCATSAAGWAYLKKIHSENQ FT KGHQLLYDAQIRSLKKGNDERVEDYVKRTIQLRTKLKDSGFDYPENITVKL FT MLDGLPPSFQHFVQQYTATGSLDKLTFDGILPLLVTEEARQASEITQERVG FT ALVGRMHATDNVNRQRWQPGTQPTQQEGCWKCGAPDHIKRNCPQLYQNQGG FT NPRPHFGGGGRHPNKFGLFAAALSATTEVCGIKGVPQWYIDSACGLHLTGC FT KEDLDDYVRVDDGPQIQALKGASLKAEGYGSVKLLTNVDGSEYTLEVEQVW FT YVPGADFRLISASELDKKGYSMEIRDGQLNLYVTVKVPERMIRFLGVRPYG FT HRFLNPLALNKPLVHRMRIATASLVAGGTYLLDATCPKYNRALAVMKDSVE FT LWHRRFGHLGYRGLEQLASEGMVDGLPVTAKQFKEAARHSIVASHASRATR FT ACIAPIIKSHLDLPLSEFILTCVKMPHFSLGGARYAVRFLDEFSSFSVVRT FT VNSKDQVAQVVKDALLLLENQTGRRVREIVSDRGREYVNVKLRAFFAERGI FT RHNISAPYTPEQNGRAERLNRTLLEKVRAMLQESGLGNEFWAEAFRTANAV FT RNCSPVSNKNATPHELLFGYKPDVSVLRVFGCTAWVYEERQHRTKLDPVSR FT KGIFVGYDSMDNYRIYLPEDGKVVVSCNVKFDESKGGSVVNVHAKDDGKSV FT SASSVSDTRKLLEDADQDEDAVGLADDAGDETAEDAGDESAEDAGEQVADA FT DAPAGEISNPPVASTSGLRRSTRDRKAPERLIAAAAILSPNPTSFQEAIKS FT PQADMWWEAMEEEIASLHRLGTWRLEHPPPDANVVPGRWVYKVKSGADGEV FT ERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKLQPKELRSTIST FT SAQHFCMAIWMR" FT CDS 3177..4190 FT /product="Lueckenbuesser_I_2p" FT /translation="MGYTVSDADPGLFIKCQGTDVVELLIHVDDLLIGSDS FT KDLIAQSRRTGEGFDCVIRRGLVLFWDGGMRDKPPGPLKISQKKYAAELVA FT RFDMADAKSAAIPMEPSLVLRREPVDEELLLDASKFRSLVGGLMYLAVCTR FT PDIAQAVYKLARFMSKPAVISHWEAAKSVLRYVKSTLAYGIVFCGSQSLVG FT YADSDWPSDPDSRRSTGYVFILNGGAISWKSRLQPTVAASSVEAEYMAAAS FT ATREAVWLRKLMRDLGYEVRAVEIKDDSQGAIALIRNPITSERSKHIDVIH FT HFVREKESSGSVSFQYCPSHDMVADVLTKPLALVKFSKFRECMGVR" XX SQ Sequence 4233 BP; 1013 A; 953 C; 1253 G; 1014 T; 0 other; ggttatgagc cccgcgcaag gatagtgtcg cggtctgccg gaaccagcca actgcgggat 60 tgcagtctca ggataagagc ggctctggta catttgagcc tggctgcagg cagggaggct 120 acatacagcc ggatttgcga aatggccgaa caatcgaagc gggtcccgaa gttggagtcg 180 atcgccgact acccgcaatg ggagccgagg gcaagaaatg ccctgattct ggatggttat 240 tgggatgtag tcaactctgc tcctattacc tctgtcgaga aaggtttaat ggcgaaggcc 300 gcgctgatca tgatggtcgg cgacaagttc cttcaggaga ttgatcagtg tgcgacatca 360 gctgctggat gggcatatct gaagaagatc cacagcgaga atcagaaagg gcaccagcta 420 ctctacgacg cacaaatacg cagcctcaag aagggtaacg atgagcgcgt cgaggattac 480 gttaagcgca ccattcagct gcgtaccaag ctcaaggatt cgggtttcga ctacccggag 540 aacatcactg tcaagcttat gctagacggc ctgccgccga gtttccaaca cttcgttcaa 600 caatacacgg cgactggcag cctggacaag ctgacttttg atggcatact gccactcctg 660 gtcacggagg aggcacgcca agcgagcgag ataacccaag aacgggtagg ggcgctggta 720 ggaagaatgc acgccacgga caacgtcaac cgtcagcggt ggcaaccagg tactcaacca 780 acacaacagg agggttgctg gaagtgcgga gcaccagatc acatcaagag aaattgccct 840 cagctctacc aaaaccaagg ggggaaccca aggccccact tcggtggagg tggccgccat 900 cccaacaagt ttggattgtt tgcagccgct ttatctgcaa ctacggaggt gtgcggtatc 960 aagggtgtac cgcaatggta cattgattct gcgtgtggcc tgcatctgac tggctgcaag 1020 gaggacttgg atgactacgt tcgagtggac gatggccccc aaatccaggc gctcaagggt 1080 gcatcactga aggccgaggg ctatggaagc gtgaagctcc tgacaaacgt tgatggctct 1140 gagtacacgt tggaggtcga gcaagtatgg tatgtcccgg gtgcagactt tcggttgata 1200 tcagcaagtg agcttgataa gaaggggtac agtatggaga ttcgggatgg ccagttgaac 1260 ctctatgtta cagtaaaagt tcccgagagg atgattaggt ttctgggcgt gcgaccttat 1320 ggccataggt ttctcaatcc tcttgccttg aacaaacctt tagttcaccg gatgcggatc 1380 gcaacagctt cacttgttgc tggcggcaca tacttgctag acgccacttg ccctaagtac 1440 aacagggctc tggctgtcat gaaggattca gttgagctgt ggcatcgccg ttttgggcac 1500 cttggatacc gtgggctaga gcagctagct agcgaaggaa tggtagacgg tttaccggtg 1560 acggcaaagc agtttaagga agctgctagg cacagcatag ttgcgagcca tgcatcacga 1620 gcaacacgtg cgtgcatcgc acccatcatc aaatcgcatc tcgatttgcc cttgagcgag 1680 ttcatactga cgtgtgtgaa aatgcctcat ttttctttag gtggtgccag gtatgccgtc 1740 aggttcttag atgagttctc gagtttcagt gtggtgcgca ctgtgaactc gaaggaccaa 1800 gttgcgcaag ttgttaagga tgcgttattg cttttagaaa atcaaaccgg taggcgcgtg 1860 cgcgaaattg tctctgaccg tggtcgtgaa tacgtcaacg taaagttacg tgctttcttt 1920 gccgaaagag ggattaggca caatatttca gctccgtata caccggagca gaatggtcgt 1980 gcggaacgtt tgaaccgtac ccttttggaa aaggtacgtg ccatgttaca ggaatccggt 2040 ctaggtaatg agttctgggc tgaggctttc cgtacggcca atgctgtacg caactgctct 2100 ccagtcagca acaagaacgc tactccacat gaacttcttt ttggctacaa accggacgta 2160 tcggttttgc gcgtttttgg ctgcacggca tgggtgtatg aagaaaggca acaccgcact 2220 aagttggatc cagtaagtcg gaagggaatt ttcgttggct atgacagcat ggacaattac 2280 cgcatttacc tacctgaaga cggcaaggtt gttgtgtcgt gcaacgtaaa atttgacgag 2340 tcaaaggggg gtagtgtggt gaatgtgcat gccaaggatg atggcaaatc tgtctcagct 2400 tcttctgttt ctgatacaag aaagctctta gaggatgccg accaggatga ggatgcagta 2460 ggtctggctg atgatgcggg ggatgagact gcagaagatg cgggggatga gagtgctgag 2520 gatgcggggg agcaggtggc cgatgctgat gcacctgcgg gggagatatc aaatcctcca 2580 gttgcatcaa catcaggcct acggagaagt actagggacc gtaaggctcc tgagcgactg 2640 attgcagcgg cagcaatcct ttcacccaat cccacgtcat ttcaagaagc catcaagtca 2700 ccgcaggccg atatgtggtg ggaggcaatg gaggaggaaa tcgcatcgct gcaccgccta 2760 ggcacttggc gtttagagca cccgcccccg gacgccaacg ttgtaccagg ccgttgggtc 2820 tataaagtaa agagtggcgc cgatggtgag gtagaacgtt ataaagcccg ttttgttgca 2880 aaaggatata tgcaagtaga gggcgtggac tatgatgaag tttttgctcc aacaagcaat 2940 catgctaccg tacgcgcctt ctctccaaag ctgcagccaa aggaattgag gtccaccatc 3000 tcgacgtccg cacagcattt ttgcatggcg atttggatga ggtagtttac gttgatcagc 3060 ctgaaggttt tgtgaccggc gagcgtggtc taaagtgtcg gttgttgaag gcgttgtacg 3120 gcttacggca agccagccgg gcttggtatg ttaaattggt aaataagcta cgggaaatgg 3180 gctacacggt ctcagacgcg gaccccggct tgtttatcaa gtgtcaaggc actgacgttg 3240 ttgagttgct tatccatgtt gacgatctgt tgattgggag tgactctaag gatctaatag 3300 cccagtcaag aagaactggc gaaggattcg attgcgtgat taggcgcggt ctcgtacttt 3360 tttgggatgg aggtatgcgt gataaaccgc cgggacccct taaaatatcg caaaagaagt 3420 atgcagcgga gttggttgca aggtttgata tggccgatgc taagtccgcg gctattccta 3480 tggagccgtc attagtattg cggcgggagc ccgttgatga agaactgttg ctggacgcta 3540 gcaagtttcg atctttggtt ggtggtttaa tgtaccttgc agtctgtaca aggcctgata 3600 tcgcgcaggc tgtctataaa ctcgcacgtt ttatgtcgaa gcctgccgtc atttcacatt 3660 gggaggctgc caagtccgtc ttgcggtacg ttaagagcac attagcgtat ggtattgttt 3720 tttgcggttc gcagtctttg gtggggtatg cggattctga ctggcccagt gatccagata 3780 gtcggcgatc caccggctat gtctttattc tgaatggggg cgccataagt tggaagagca 3840 ggctacaacc tactgtcgct gcatcgtcgg ttgaagccga gtacatggct gctgcgtcag 3900 caacgcggga ggcagtttgg ttgcgtaagt tgatgaggga tttgggctac gaggtacggg 3960 ccgttgagat caaggacgat agtcaaggtg ctatagccct gatccgcaac cccatcacgt 4020 cagagcggtc aaagcacata gacgtgatcc accactttgt tcgagaaaag gagagttcgg 4080 gtagtgtatc gttccagtat tgcccttctc acgatatggt tgcagatgtg ctgacgaagc 4140 cgttggcttt ggtcaagttt tcgaaattcc gagagtgcat gggagttcgt tgagttttct 4200 ctggggtgtg ccagagttct gtccgcgggg gag 4233 // ID Copia-4_SMo-LTR repbase; DNA; PLN; 139 BP. XX AC ADFJ01003091; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_SMo_; KW Copia-4_SMo-I; Copia-4_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-139 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01003091; Positions 79736 79598. XX SQ Sequence 139 BP; 37 A; 33 C; 32 G; 37 T; 0 other; tgtcgagatg tcagtctcga tcagctgacg tggcatgtcc acgtggtcat gagtcgtgtc 60 ccttgagtca tgtaaaaaaa gtcggaacac aatgaacgag ctcatgagtg ttatgtccat 120 ccctttttac accacaaca 139 // ID Gypsy-15_PIT-I repbase; DNA; PLN; 8000 BP. XX AC AATU01000091; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PIT_; KW Gypsy-15_PIT-LTR; Gypsy-15_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8000 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000091; Positions 13236 21235. XX CC Positions [6716-7228] - Integrase core CC 'GGTC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 486..2138 FT /product="Gypsy-15_PIT-I_3p" FT /translation="MQSKDTMGMAATMQRLTRAVAELQASTKEVHGADKEG FT RHGHARGKYRRRAQRVRRVPSDDGEPDEQSNDEDQHGAELMASTAVSGGTA FT PNNHVDMTAMASAIQTLTIVVAKLQPAPSRTQRFQAGRRVLRRSGSRAGEA FT RHKGDSGDSGSSDWSTPDDNDSGVDYSGVNPDGDGSSGDDSSEPSESSSAS FT SDGSAESDEQRGRQESRRRHGRHGRHVRGERRRRQVQRGRHGDDERQSRRR FT SVKDLVLPTFTPSPKVSVSTWIDRVDLALKRAAKSGRGKWSDHALYFIFGN FT KLMDNTARWWVNMDRRLPSRDRTWAYLKKALLRRYGERLDKSAAEWRVNMR FT RMMPGETYSDFAAALRDVVGRNKVSERILLAQFYRNLDKTTKKLVKQRPKP FT ATLKEAVDKANEIDDPMDNVAQGMLNIGQPWAIAPSPYLVPVGGTTGQTLV FT IPGIGGTGLPAELQVANEGGMTAAEEEHGTLALFTSPQGVWNEYSGTWDVP FT SGRIWNGKFWYESKKASRKRSVENAARSSRKETKKPAKAQKTRVNRRHRAA FT TSQM" FT CDS 2536..3645 FT /product="Gypsy-15_PIT-I_1p" FT /translation="MTINTNVTTESAEMKQNGIQQGRSTECEVRQQNRKLK FT EDQRSGDATNGNDIQEVTKPMATSGANSLEEMWQCMATEAAGKDSERAACY FT VATVRPAMTDMRYACLDATRPKDGVEKVGSDNNVRGSEEGVGMETDLTPEN FT LEYGTGDDDKVSKDIARVRVARKSACNQKKRQRVKRALEKRRTADQENKRQ FT QANKVELQQDRQRQVEDAVQQLEERRQGRNEEGEPGRGGRARVSLVQRCST FT EGAESKVSDVEANDGLPTARMKVDDVTKYVKLDSGARFTIAGTSWVKYGDR FT VSCSAPVDYVEGIGGFLLDVLGVWRFQLENVFGDTVCVDACIVKGCYNEFL FT VGVDFMNDHGAVMDFRTNELKYKKDVR" FT CDS 4787..7999 FT /product="Gypsy-15_PIT-I_2p" FT /translation="MEYLRHELSSKGVRPLDRLVTAVREFPRPTDAVEVKR FT FVHLAGYYRRFVEGFGALMAPMTKLLRKDAEWEWTEAQEAAFEHVKVVLTR FT KPLLAYPNFRLPFRVVTDASKVGLGACLTQDQGKGWQPVAFASKVNSNTEA FT NYGITELECLAVVWSIKLFRPYLYGRRFVIVTDHAALKWLMTSTNLTGKLH FT RWALTLQEYDFEVEYRPGNTNVVADALSRAPVNVLAAAGRKRRGRRRTFSE FT RHSDFHKMRSKDGNRKQYNDGARGTTEEGANDAEVTVAPPINMDGTRTMAH FT DGEATGQDSTKVRPELMATAKIVAPLRASRQPVPPDSSRPMTRANRRRQED FT VERNAREKMTAEDKNVDEATTAGKTSCVDDVTEDLDDSNERQNELSRTAET FT KDDKNTKKPKRRATWAMDDVESRTNMTATEGEKVMPPVGAPRRTAVSNHRN FT RVRTEEGELREQPELTESAVHAGHTLQQERGRPSNTRSEYRGVTNNDTRTK FT NQTSGVGERPKPVEQRQERRAGQAKGDERQHEEVTTLQLTDTMISEAQGRS FT RLVQKLLEAGMHKGMKIETEYGLALIETANGRRVVLPPELWSLVFKDCHDS FT VWSGHLRAPHTYARIAQLYWWPNLQREGKRWVAGCQECGSRKARPREVVPT FT LRSLRGGEVGDRWALDVAGPLPQTGGGQRYVIAAVEYVTRYAVAAAVEQHT FT AENVANFIMKNIVLRFGVFRELLTDGAPELTGIVIEKLITMLQAQQINPVP FT YRPQMIGLVERFHRTWKDCIATYMHSEDQNDWDTWLDFAVYAYNSGKHSTV FT ALSPNELMMGRRLRAPNELLRCANVTEAGKLSEYHARLLSAMKISHECAEQ FT ARQKEQARQARYYNRRARMTRVFSTGDRVWMYRPPRGTKTTKLVHAWIGPL FT RIIEPAGYDNYVVRREDQNEEPEEFIAHVSFLTTYHSKVELLQRAAADLQA FT QLEYEEQHADDTPAGTFARATTAPVQAASAPAGSKRSRTVAGTDVWGESGG FT KLVEIRRRRRRNKAGQYVLEFELQPVGRECRETTGDSGTRWVSITEYDKYF FT YDGRVVEDSTSEEG" XX SQ Sequence 8000 BP; 2343 A; 1727 C; 2471 G; 1459 T; 0 other; tggtggtcat acaggggcta tctcagagca acgaagagag ttcagaaaga caggaaagca 60 aacgggctag tggttacgct gggttacgaa ggttacgggg tacgaaaatg gttactgctg 120 cgacagtcac tactctaagt aagaaagcgc agaaggcgcg gcgagtcagg aaggccggcg 180 aagaaagttc actcagcagc acggactccg agtctgggcg tccggtgacg aggagccaag 240 gcgtacggaa ggtggccgtc ccggtatccc cacgaaagag agtggacaag cggcaagcag 300 ccgagcaagc ggtggaacag gcggaagcga agccggtgaa gatcaaacgg agagcgtcgg 360 cgaatcagca gcgataggcc tcgaagaata aggatgccaa ggaactcgga cgggtcatag 420 ccactgatga gaaggactgc acgcggagcc gcgaagcgga gaagagtggt gaagacgcgg 480 caggaatgca aagtaaggat acgatgggca tggcagccac aatgcagcga ctgacgaggg 540 cagtagccga gctacaagcg tcaaccaagg aggtccatgg agctgacaag gaaggacgac 600 atggacatgc acgtgggaag taccgacgcc gtgcacagag agtgcgtcgt gtgcccagtg 660 atgatggaga gcccgatgaa caaagcaatg atgaggacca acatggtgct gaattgatgg 720 ccagtaccgc cgtgagtggc ggcactgcac caaacaacca cgtggacatg acagcgatgg 780 cgtccgccat tcagacgttg acgatcgtgg tcgcgaagct gcagcctgct ccttcgagaa 840 cccagaggtt ccaagctggt cgacgggtat tgcgacgcag tggatcacgt gctggtgaag 900 cgcgtcacaa gggtgatagt ggagacagtg gttcgtcgga ctggagtact cctgatgaca 960 acgatagtgg agtcgactac agcggggtga atccagatgg cgacggcagt agcggagacg 1020 acagtagcga gccgagtgaa agttctagcg cctccagtga tgggtcagcc gagtctgatg 1080 agcaacgagg gcgtcaggaa agccgacgac gacatggaag gcatgggcga catgtacgag 1140 gagaacgacg gaggcgtcaa gtccaacggg gacgacatgg agacgatgaa agacaatccc 1200 gtcgcaggag cgtgaaggac ctagtgttgc cgaccttcac cccctcgcca aaggtctctg 1260 tctcgacgtg gatagacagg gtggacttag ccttgaagag agccgctaag tctggacgtg 1320 ggaaatggtc agaccatgcg ttgtatttta tctttggaaa caaacttatg gacaataccg 1380 cacgctggtg ggtgaatatg gatcgacgat tgccatcacg tgaccggaca tgggcctact 1440 taaagaaagc acttttacga cgctatggtg agagactgga taaatcggca gcagaatggc 1500 gtgtgaacat gcgcaggatg atgcctggag agacgtactc tgatttcgcg gcagcattgc 1560 gagatgtggt tggtcgtaac aaagtcagtg aacgcattct attggcgcag ttttacagaa 1620 acctggataa gactacgaag aaattggtga aacaacgacc gaagcctgca accttgaaag 1680 aggctgtaga taaagccaat gaaatcgacg atcccatgga taatgtggcg cagggcatgc 1740 tgaacatagg acagccgtgg gccatagccc caagtcctta tctggtacca gttggtggca 1800 caaccggcca aacgttagtg attccgggga ttggcggaac aggattgcca gcagagttgc 1860 aagtcgcgaa tgaaggtgga atgacagctg cggaggaaga gcatggcaca ttagccctct 1920 ttacgagccc acaaggcgta tggaacgagt attcaggcac gtgggatgtg ccatcgggtc 1980 gcatatggaa cggcaagttc tggtatgaat ccaagaaagc cagccggaaa cgctctgtcg 2040 agaatgcagc cagaagctca cggaaagaaa caaagaagcc agcgaaggcg cagaagacga 2100 gagtgaaccg ccgacatcga gcagcgacga gtcagatgtg aaaccgcagc gcaagaaaca 2160 gaaagccgtt gtacgacaag cagcagtacc tcgacaagag caacgaagtg gtagtacaca 2220 gccaccaggg aagccaagag taccgcagaa tccacaagca tgctggaagt gtggcaagag 2280 tggacactgg gcagcacagt gcccaacggg acccaaatgc tacgcatgta atcagtacgg 2340 tcatatggcc aaggaatgca ccgatgccga agctaaggcc aagaacgagg agaatctacg 2400 gaagcgtaag accgacgaca aggtggcggg aaacgcgaaa ccggcgcagt agaggggtta 2460 cggcgaccgg agaataacga cccccggctg atgatgagtg cagatggcta aggtagtgcg 2520 acaagagctc aaggaatgac gataaacacc aacgtgacaa cggagtcagc ggagatgaag 2580 caaaacggga tacagcaagg aaggtcgacc gagtgtgaag ttcgacagca gaaccggaag 2640 ttaaaggaag accaaagatc gggagacgcc actaacggaa atgacataca agaggtaacg 2700 aagccgatgg caacaagtgg cgcgaactcg ctggaggaaa tgtggcagtg tatggctacc 2760 gaggcagccg ggaaggacag tgagcgggca gcttgctatg tagcaacagt acgtccagcg 2820 atgacggaca tgcggtatgc atgcttggac gctacgcgac cgaaagacgg cgtcgagaaa 2880 gttggctccg acaacaatgt gcgtggatct gaggaaggcg tcggcatgga gaccgatctg 2940 acacctgaga atctggagta tggcacgggt gatgacgata aagtgagcaa agacatcgcc 3000 agggtgcggg tggccaggaa atcggcctgt aatcagaaga aacgacagcg agtgaagcgt 3060 gcgttggaga agcgacgtac cgccgaccaa gagaacaaac ggcaacaagc caataaagtt 3120 gaactacagc aagaccgcca acgacaagtc gaagacgcag ttcaacaact ggaggaacgt 3180 cgacaaggac ggaatgaaga gggcgaacca ggtagaggcg gacgagcacg agttagcctc 3240 gtacaacgat gcagtaccga aggagccgaa agcaaggtat ctgacgtgga agctaacgac 3300 ggactaccta cagcacgaat gaaggtcgac gatgtaacaa agtacgtgaa gcttgacagt 3360 ggagccaggt tcacaatcgc tggcacgagt tgggtgaagt acggagacag agtgtcgtgc 3420 tcagcaccag tggattatgt cgaaggaata ggaggattcc tactagacgt tctaggagta 3480 tggcgtttcc agttggagaa cgtgtttggc gacaccgtgt gcgtggatgc atgcatagtc 3540 aagggttgct ataacgaatt cctagttggt gtggacttca tgaacgatca cggcgctgtt 3600 atggattttc ggaccaatga gctgaaatat aagaaggacg ttcggtagta ataccgttca 3660 agactagtga cgctgcaaaa ggtgtgaagg ttgcggcagt gcgcatggcg cgaaaaaccc 3720 aagttcgtgg aggtacagta atgcccatag agattgcggt gacaggcgag gatggggaga 3780 aaggcatctt catacccaca gttcgtctgg gatccatctt gttggctacg acagtgacgg 3840 aagtacgaga cggaaaggca gtggtgcccg ccattaatgc aagtggtggt agggtcaagc 3900 ttccttcaaa gaaagaatta gggacgtgga ttcctatcga ggaaaatgtg gaagtcctcg 3960 aaatgaatgg cgtcttacaa cgcgatcaat tgctgggatg gttgcgtgaa ttgggagatg 4020 gagagactcc gttggaaaat gaggacgagc tacaaatagg catcgaagac gaaggcgggc 4080 gagagctcat gaaacgtttg ttgagggtat atagaaaaca agtagcggac aaaggtgact 4140 gcccacctgc tactacactc gacgtggggc atcaaataga gacgggcgac gaggccccta 4200 ttctgttaaa acgcagacga cttgcacaaa tggaagacac tgtggtcgag acgaatgtca 4260 agaagatgtt gggtgcaggc gtaattgaag aaggtaacgg cgcttggggg tttcctgtag 4320 tgctggtaag aaagaaagac ggcgagattc gcttttgtgt ggactatcga gctctgaaca 4380 aaataacgag gaaggatgtc taccccttac caagaattga tgaaaccttg gaagcattgg 4440 gtggagcagt cttatttacg actctagatt taagatctgg gtactggcaa attcgagtgg 4500 cagctaaaga caaagagaag actgctttta cgacaaaaca aggcctatat cagtttgtta 4560 gaatgccttt tgggcttacg aatgctccat caacgttcca gagaatgatg aatagtgttc 4620 tacgaggtct ggcgtggatc acctgcttag tctacctgga tgacatcgta atctacactc 4680 gcggtgggtc gaacggcatg tgttgggagt cgcttgtgta ttgaagtgtt tggcagccgc 4740 tgggcctaca ctacgactaa agaaatgccg attcgcgact gaaagtatgg agtacctgag 4800 acacgaactc agttctaaag gcgttcgacc actcgatagg ttggtgactg cggtacggga 4860 atttccacga cctactgatg ctgtggaagt taaacgtttc gtacatcttg ctggttatta 4920 tagacgattt gtggaagggt ttggcgcatt gatggctcca atgaccaagc ttctgcgaaa 4980 agatgctgaa tgggagtgga cggaggcgca agaagcagca tttgagcatg ttaaagtcgt 5040 tttaactcgc aagccgctgc tggcttaccc gaattttcga ctaccgttta gagtggttac 5100 tgatgctagc aaggttggtc tcggcgcatg ccttacgcaa gatcaaggca agggctggca 5160 accagtggca tttgcaagta aagtgaatag caacacggaa gcaaattatg gaatcacaga 5220 actggagtgt cttgcagtag tttggtcgat caagttgttt agaccttacc tctatggaag 5280 acgatttgtg atcgtcaccg atcatgcagc actcaaatgg ttaatgacaa gcacaaacct 5340 aaccggaaaa ttgcatcgct gggctcttac gctccaagag tacgattttg aggtggaata 5400 tcgtcctggc aataccaacg tggtagcaga tgcgctatct cgcgctccgg taaacgtgtt 5460 ggcagcagct ggtcggaaga gacgaggacg acgacgcaca ttcagtgaaa ggcactctga 5520 ttttcacaag atgcggagta aggacggtaa caggaagcaa tataacgacg gcgctagagg 5580 cacaactgaa gaaggcgcga acgatgccga ggtgaccgtg gcaccaccga tcaacatgga 5640 tgggacacga acgatggctc acgacggcga ggcaacaggc caagactcga cgaaagtacg 5700 gccagaactg atggcaacgg cgaagattgt ggcaccactg agggcctcga gacagccagt 5760 gccgccggat tcgtcaagac cgatgacaag agcgaacaga aggcgtcagg aggacgtaga 5820 gcgcaatgca cgcgaaaaga tgacagccga ggacaagaac gtcgatgaag cgacgacggc 5880 gggcaagacc tcatgcgtgg acgacgtcac agaagatttg gacgacagta acgaaagaca 5940 gaacgagttg agcaggacgg ccgagaccaa ggacgacaaa aacacgaaga agccaaaacg 6000 acgtgctacg tgggctatgg acgatgtcga gagtaggacg aacatgacgg caacggaagg 6060 cgagaaggtg atgccgccag tcggggcacc acgacgaacg gcagtgagca accatcggaa 6120 tcgtgttcgg actgaagaag gcgagttacg tgagcaacca gaacttaccg agtctgctgt 6180 acatgcagga cacacactac agcaagaacg aggacgaccg agtaatacac gtagcgagta 6240 tcgtggtgtt acgaacaatg acacgagaac gaagaaccaa acgtcgggag tcggtgagag 6300 acctaaacca gttgagcaac gccaagaacg aagggcagga caagcaaagg gagatgaacg 6360 gcaacacgaa gaagtcacga ctcttcagct cacggatacg atgatcagtg aagctcaagg 6420 ccggagtcga ttagtccaga agctactgga ggctgggatg cataagggca tgaagattga 6480 aacggagtac gggttggcac ttatcgagac tgctaacgga aggcgagtcg tactaccgcc 6540 tgaattatgg tctctagtgt tcaaagactg tcatgattct gtatggtcag ggcatttacg 6600 agccccacat acatatgcac gcatagctca actctattgg tggccaaact tacaaagaga 6660 aggtaaacgg tgggtggccg ggtgccagga gtgtggaagc cgtaaagcac gaccgagaga 6720 agtggtaccg acattacgaa gtctacgcgg tggagaagtt ggagaccgct gggcgttaga 6780 cgtcgcagga cctcttccac agacaggagg tggacaacga tatgttatcg ctgcagttga 6840 gtacgttacg agatacgcgg ttgcagcggc agtggagcag cacacggcgg aaaatgtggc 6900 aaactttatt atgaaaaaca tagtactacg gtttggtgta ttccgcgagc tactcactga 6960 tggcgctccc gaactaaccg gtatcgtgat tgagaagttg attacgatgc ttcaggcgca 7020 gcagattaat ccagttcctt atcgtcctca gatgattggt cttgtggaga gatttcatag 7080 gacttggaag gactgcatcg cgacctacat gcatagtgaa gaccagaatg actgggacac 7140 ctggctagac tttgcagtat atgcgtacaa ttcaggcaag cattcgacag ttgcgctgtc 7200 accaaatgaa ctgatgatgg ggcgtagatt acgagcaccc aacgagttac tacgctgcgc 7260 caatgtgact gaagcaggaa agttgtccga gtatcatgca cgtctgttga gcgcgatgaa 7320 gatcagtcat gagtgtgcag agcaggctcg ccagaaggag caagcgcggc aagctcggta 7380 ctacaaccga cgtgccagaa tgacgagggt gttctcgaca ggtgacagag tctggatgta 7440 tcgaccacct cgtgggacga aaactacgaa gttagttcat gcgtggattg gacccctccg 7500 aatcatcgag ccagcaggct acgacaatta tgttgtgcga cgtgaagatc agaacgagga 7560 accggaggaa tttatagccc atgtaagttt cctcactact tatcattcaa aagtcgagtt 7620 actacaacga gcagcagctg atctacaagc acagttggaa tatgaagagc aacacgctga 7680 tgacacgccg gcaggcacgt ttgcgagagc aacgacggct ccagtgcaag cagcctcagc 7740 tccggcaggc tcaaagcgaa gtcgaacagt ggcaggaacg gatgtgtggg gagagtcggg 7800 tggcaagttg gtggaaatac gacgacgacg tagacgaaac aaagcagggc aatatgtgct 7860 tgagttcgaa cttcaaccag ttggacgaga gtgtcgagag acaactggcg atagcggtac 7920 ccgatgggtg tcgatcaccg agtacgacaa atacttttat gacggtagag tcgtggaaga 7980 ctctacgagt gaagaaggcg 8000 // ID Copia-45_PIT-LTR repbase; DNA; PLN; 286 BP. XX AC AATU01003547; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-45_PIT_; KW Copia-45_PIT-I; Copia-45_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-286 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003547; Positions 141443 141728. XX SQ Sequence 286 BP; 70 A; 63 C; 70 G; 83 T; 0 other; tgcgatgtac tggttcacaa gttgaggctc tctagggagg ttagcttttg gtcccgaatg 60 ggttttgtgc caccggcttt tgtcccaaat gggtttttgc taacatgtgt gagaaaggtg 120 agagaagaag agacaggtaa tgtagcaaca cagaaagtta ttcattctgg aatatacgct 180 ctgctgagca gccttcctca ctacactaac gctcgtaggc ttcgttctat ctgtcaccta 240 acagtgacat agctactcgc tctgcgctaa atacttgcgt actgca 286 // ID ABR1 repbase; DNA; PLN; 314 BP. XX AC AJ238113; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Agaricus bisporus hAT-type non-autonomous class II DNA transposon DE ABR1. XX KW hAT; DNA transposon; Transposable Element; Nonautonomous; ABR1; KW class II; hAT-type. XX OS Agaricus bisporus OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Agaricomycetes; Agaricomycetidae; Agaricales; Agaricaceae; OC Agaricus. XX RN [1] RP 1-314 RA Sonnenberg S.A., Baars J.J., Mikosch S.T., Schaap J.P. RA and Van Griensven J.L.; RT "Abr1, a transposon-like element in the genome of the cultivated RT mushroom Agaricus bisporus (Lange) Imbach."; RL Appl. Environ. Microbiol 65(8), 3347-3353 (1999). XX DR Genbank; AJ238113; Positions 1 314. XX SQ Sequence 314 BP; 87 A; 74 C; 67 G; 86 T; 0 other; ctcagtaaaa agcgattttc aggcattttc gggtttctca tgccctgaac ataggctgaa 60 aattgtcctc tttctagaac aatgcgagaa catgatcagc caacgttcag gcaagttgct 120 ttaaatgtgg aacatttgtc gggccaagct caggttgtgt tcaggcaacg ttcaaggtgt 180 aagaacctca actctcaccg accttcaggg tgccaatcga ccctaaacca gccctaaatc 240 agcctgcatt gtcccgaatt acgttgaatt gacctggatt agcctgaaag atcctgagaa 300 tattttttac tgag 314 // ID Copia-16_PIT-LTR repbase; DNA; PLN; 263 BP. XX AC AATU01000367; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-16_PIT_; KW Copia-16_PIT-I; Copia-16_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-263 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000367; Positions 30503 30241. XX SQ Sequence 263 BP; 71 A; 61 C; 62 G; 69 T; 0 other; tgttggacat tgatgtaaga gccagccaac gggcaggcga ccggaagcca gacccccaag 60 gacctttacg caagtgtcga gtcgacaatg ttgaaggtac gacattttga cttggtttca 120 ctattgggac caatcagatc gagtgtaggc gcgtgtcgtt tcaggttatt gtgtagtgtg 180 catgtagaat ccaactaaaa actcctttga atatatatct cactttcact tctaccttct 240 gccgagcaag tgccaaacca aca 263 // ID Gypsy-42_PIT-I repbase; DNA; PLN; 12825 BP. XX AC AATU01002694; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-42_PIT_; KW Gypsy-42_PIT-LTR; Gypsy-42_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12825 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002694; Positions 151126 163950. XX CC 'GGAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 6943..9600 FT /product="Gypsy-42_PIT-I_1p" FT /translation="MNIESPHDLHTVRAFLGLTSYFRRYIPGFAAISAPLE FT RLKQKDVDFRWNDDCEGAFRQLQRALVKPPILVYPDFKKRFKLYVDSSHLA FT VGACLMQEVDKRDRAIAYASKMLVGSQRSWVNKTSGTTEIKCWGIVWSTRK FT FRCYLSHAEFDLYTDHQALTWIFGETTRTSNAKLARWAMELSQLRFKIYHK FT PGTSMGHADGLSRLYHRPDAGIVSAIRMADLLNDSEEETPGVQVPISDEVQ FT TQSGTQALNGALGRNVTDVPIPVGKPAETTDPNGETERSNQQTEDASVVVE FT PLTQAEQEEDSQGRALQANSSPIDVFGLDYDKFVAEQERVPWMRALKAFLK FT DGALALDPQLRVSVLKMSTHYLIRNGVLARLVHLGARAGPARTVCVPTVPL FT PFIETVLHYCHADIFSAHLGRTKTTDKVRRHAYWHGWRKDVIEYVRECSIC FT SGGKGHRPWRAGLMQRMPVQDLSGPFSLLVVDAIGPLVVTPRGNKYILVFV FT DYFTRWVEAFAVASLDTIAFVNAMIEGVICRHGVPERLLSDRGSNFTSNLA FT KSLYQTLGIKKLFGAAYHPQTQGLVERFNGTLMGMLRMFVSETQTDWDVYL FT PRVLFAYRTAYHEGLGDTPFFSLYGRDPVLPIDIAFLNTGRDWKSNEVATY FT RRKLYRSLRDSRRLVERQLLKAQDRHEQRLDNQVKVTYAEGDAVWVYQYFR FT ARVGERRTKKLAFSWHGPYRVVGQVGENAYRIAIPTHPNKVVTVNVNRLKR FT FQGRWSRPYADEKPDRVEEEEDEDGTGPLDVEDPPSTSFVERLSVGEEETA FT FSGVSSPIVDVIAKRVEKRELQYLVLTATYETFWLSRAALAPEFGTMIRAF FT EDADRKKRGLPELRRNVRLVEANADVDDAEVLF" FT CDS 11818..12825 FT /product="Gypsy-42_PIT-I_2p" FT /translation="MTMWGALAEWAEQANWTMDFEVADEMRVVGSAVMGIV FT IWIATTPLRNVSWAFLDGTIENVRAIYFFWYTCCDRYLVAARNAHAAAVPP FT PEYACALVKLLFLVPIAVLQDYESRFGITGRMCLKWCEAFHHSCCLYVPEA FT SLLLWGTSCRYARATSEAVVAVVDRVGDFIVGSYLLTSLLLSILIYLPRLV FT YESIEGILCGWMGVTLVVLIVDVYLEFEIGCCYWNLAVLVVGCYSYVVRYY FT EGLRPSAMDQNDKAARRKWEGLAGRIERREERERASVERLRGMQAEGTSSG FT VRNESPNASGTSRGNVPDLTVGDTVRQAPGDVARRGHRASVGEN" FT CDS join(1026..2567,2571..6290) FT /product="Gypsy-42_PIT-I_3p" FT /translation="MRNQTPVSTPSRMPMAAIPSYGGVSIPMAGSTWSGGG FT GGTPQRSAFYPPFQPPMTSTPGWAAAGTIPAWSAASARQTPASPRSGTYGL FT PFQRTSPMNVATFQGRAGALGQEGNVGAQGGRYAHNAVPPQGQVTSPYYDQ FT GVRNGSHGSGRGAQQDVPIVGIPTELRNAVKVIVPFYSETATYERAAAFWR FT SFEKCTLGMDDQMRLTAFEQCLKGKLGQEWWNNARINDFETLRVRFHNRFI FT FQTPAQLWSRLKAAKRNYGESAEEWGDRIITMCEYLNYHEPRMQYEFFLDG FT LRNKQMRAVLNANLAASIQEACALLLYKNLHLPVEEEDEFANSGTTVRNVN FT AVTSTQSQMLQQLQQMNQLMLKQQQNPGTSQGFVGAVAPTNVPSTGIPAPN FT GNVAGAPLGPLRIRLGPDTRTTEGKMVCGRCGRVGCGRETCPRGQGRCNRC FT YELGHYSMECNWPRPQGNYRNGERRQAECLLCGKAGHLVARCPSLDTLRDL FT MQSVAAGNVTAPAGTSQQRGQEEGEGSVAPSSCLVGDTKRDEGSPRQDLAD FT GHQRALGRSVMSDEGARDVPGTSVTTEIVETMSGTSGESSPTERTGLERDE FT KIEGSTERPARDGVVAEVTTERSSATLNWESEKRARSELVQDVSKGATERP FT ETASDAKNECLEIKGSIEKPVRERVVAEETTERSSAKLNWENGTTERSKSV FT EDVSKGATERPETTLDAEEKCQESEGVETLSTRSKQYEGALETITEDASGA FT RSSQFSAVIGQVSTGQERTEAQKAEEDEERTKGKDSTQHYERLFTDEELDM FT LEHGGSQVVKNEPEVYGKELEERLFPMNEEEVLLRAKRNADEQKKGATERP FT ETTLLYAEEKCQESEGVETLSTRSKQYEGALETITEDASGARSSQFSAVIG FT QVSTGQERTEAQKAEEDEERTKGKDSTQHYERLFTDEELDMLEHGGSQVVK FT NEPEVYGKELEERLFPMNEEEVLLRAKRNADEQKKGATERPETTLDAEEKC FT QESEGVETLSTRSKQYEGALETITEDASGARSSQFSAVIGQVSTGQERTEA FT QKAEEDEERTKGKDSTQHYERLFTDEELDMLEHGGSQVVKNEPEEYEKELE FT ERLFPMSEEEVLLRAKRNADEQGKPTLAEMSAELGIPEDVLKRTREVSSGD FT LGTPEYWLDWYAHTLETSTEAKRANRDFKDVGGTGEKSTTVVGSVTTDEDE FT RKGCTEMSEDALENEFVQNVCVGLEEDVVPISELPAEEKGTLPFRWRSIIR FT KQVYELLKQEQNATKDRQSDVPESGENGDAEDDIPPLRDKENRVFLDEDSF FT RGYLVEVGGALAETFQNRALAWARDYFETEASVIRDKLCDRRDETSKIVAA FT TVATSSRKRVTFGATIKDGDPKIGEEEPEVYSLNVRRAPKPRRSPGLREVS FT GDDVFDDGESVVPDGKRVICSVGGVQALSDGFIDCCPSEMLADTGAVASLV FT DKRVLKRLGRASEPLRPYTGGLDSVSGHKIRVSGVIDLPVTLGTLEKTLPF FT VVTDHLFVDAILGTDSLRAFRAVIDLEEQSMTLKETGDVVPLGATRVEETY FT AATISSTVRLEPGRQALVRSSVRGTMKDHSVVLVEGVPGTDEALRVARTLC FT TVTDGTVLVEVCNASAEEVEIKSGAYVAAVTIVPKSAFATRVSKSDETTRN FT VSAVLSTVKGNVPAEAGTIEAEMSAAMDDSEEDDFEVDFEDSSLGAEQRGL FT FAEGPERLIRRNFKEAWKDGPATFQHRHRRSRAY" XX SQ Sequence 12825 BP; 3089 A; 3047 C; 4139 G; 2550 T; 0 other; atttggtgga gaagcagggt atcttctagc cgaatttcgt aggagtacaa gcgtaagaag 60 aagccttggc aacggagtgc caaggaggaa ggagagagaa gtgggaaaag gatgagtgct 120 gaaggatggt ccagcgaggg acttggagcc ggtgaagagg tagggggatg ggctcctccg 180 ttggaaacgg agcccgtgga gatcctcgag gagaaagagg aagcgcgcgc tgagagagct 240 gctgacggcg gcacgccgca gagacttcaa ggaagggaac gccagggaga tggcagggaa 300 cgtggcacgc cgcagcgagc tgatcaagag acgggaggac tcgagacacg agtggtccac 360 gtggaaggcg aggacatgtt cgacgtggcg tcttcgtctc cgggaacgag aaggacggtt 420 gagtctgtgt ctggaacgcc tcagggtgga cagatgtcca acacagtcct tgagcagtgg 480 gcacgtcaac cggcgccgag cgaaggaacg acgcctgcaa ggacgacgac gggtacgctc 540 ttggacgctt cggtgatgga ctcgggaggt cgccgcgaag tggggttcgc cttggatcgg 600 actcgtccct ccttgcaacc gatggacgac tctagaaggg acgtgcccat ggtcacgtca 660 gtgtacggac aacccaacaa caacgtaccg ggccaacaag gaagccgacg tgccccaggg 720 gctacacatg ctgttgctgg aacacctacg cgagcgtacg tacctggtgg aagtcgagga 780 gcgacgcctg ttcaatcgat gagaacgccg acgagaggaa gtgggacgcc gacgacggac 840 ccagccttat aggctctcat catggacggt ctcgcccaac tgctacagag ggctggagtg 900 acggatggaa cgccggtgcc gtctccaaga cctcaagcta caggacacgt gcctcgtacc 960 gtgccgacac cgacccgacc aatgacgtct tcagtgatgg ggtatcaagg acctatgacc 1020 cggggatgag gaatcaaacg ccggtttcga cacctagccg aatgccgatg gctgctattc 1080 cttcgtatgg tggcgtgtca attccaatgg ctggttccac gtggagcggt ggaggtggtg 1140 gaacgcccca acggagtgcg ttctaccctc ccttccaacc gccaatgacg tcgacacctg 1200 ggtgggctgc tgctggaacg atacccgcgt ggtctgctgc gtctgcacgg cagacacctg 1260 ccagccccag aagcggaacg tacggattgc cgttccagag aacgtctcct atgaatgttg 1320 cgacgttcca gggacgagca ggagcgctag gacaagaagg gaacgtgggt gctcaaggag 1380 gaaggtacgc acataacgca gtacctccgc aagggcaagt gacgagtccg tactacgacc 1440 aaggagtccg caatggctcg cacgggtcag ggagaggtgc tcagcaggac gttccgattg 1500 ttggtatccc gacggaattg cggaacgcag tgaaagttat cgttccattc tactccgaga 1560 cggccacgta cgaaagggcg gccgcgttct ggcgttcctt cgagaagtgt acgctcggta 1620 tggacgacca aatgcggttg actgcctttg agcagtgtct gaagggcaag ttgggtcagg 1680 agtggtggaa caatgcgagg atcaacgatt ttgagaccct gcgcgtgaga ttccacaacc 1740 gcttcatctt tcagacgcca gctcagttgt ggagccgact caaggccgca aagaggaact 1800 acggcgaatc tgcggaagag tggggcgacc ggatcatcac gatgtgcgag tacctaaact 1860 atcacgaacc tcgtatgcag tacgagttct tcctcgatgg gttaaggaac aagcagatgc 1920 gtgccgtttt gaacgcgaac ctagctgcgt cgatccagga agcgtgcgct ttattgctgt 1980 acaagaatct gcacctccct gtggaagaag aggacgagtt tgctaatagt ggaacgacgg 2040 tgaggaacgt gaacgcggtg acgtccacgc agtcgcagat gctccagcag cttcaacaaa 2100 tgaaccagtt aatgctgaaa cagcagcaga atcctggaac gtcacaaggg ttcgttggcg 2160 ccgtggctcc tacgaacgtt ccaagtactg gcattccagc tccgaatggg aacgtggctg 2220 gcgcaccgct cggacctctt cgcatccgac tagggcctga cacgcgtacc acggaaggca 2280 aaatggtttg cggacgctgt ggtcgtgttg gatgtggacg tgagacgtgt ccccgtggac 2340 aaggccgttg caatcggtgt tacgaacttg gacactactc gatggagtgc aactggccaa 2400 gaccccaagg gaattaccgg aacggagagc gacgccaagc ggaatgtctg ctgtgtggta 2460 aggcgggtca cctggtggcg agatgcccga gcctcgatac tttgcgagat ttgatgcaga 2520 gcgtggccgc tgggaacgtg actgcacccg ctggtacgtc ccaacaatga agggggcagg 2580 aggaagggga aggaagtgtc gctccttcct cttgcctggt tggcgacacg aagagagatg 2640 agggttcacc gcgacaggac ttggcggatg gacatcagag ggctctcggg agaagtgtga 2700 tgagcgatga aggcgcacgt gacgttcctg gcacaagcgt aacgacggaa attgtggaaa 2760 ctatgagtgg aacgagcgga gagagcagtc cgacggaacg gactgggcta gaacgagacg 2820 agaagattga gggctctacg gagaggcccg cacgagacgg agtggtcgct gaggtaacaa 2880 cggaacgttc ctctgcgacg ctgaactggg aaagcgaaaa gagggcacgt tctgagttgg 2940 tacaggacgt cagtaaggga gcaacggaac gccccgagac tgcgtcagat gccaagaacg 3000 agtgtctaga gataaagggc tctatcgaga agcccgtacg agagagagtg gtcgctgagg 3060 aaacaacgga acgttcctcg gcgaagctaa actgggaaaa cggaacaacg gaacgttcca 3120 agtcggtgga agacgtcagt aagggagcaa cggaacgccc cgagactacg ttggacgccg 3180 aagagaagtg ccaagagagt gagggggtgg agacgctgtc cacccgctca aagcagtacg 3240 aaggagcact cgaaacgatc acagaggacg catctggcgc caggtcaagt cagttctcgg 3300 cagtcattgg acaagtgagt acaggtcaag aaaggacaga agctcagaag gccgaggagg 3360 acgaggaacg tactaagggg aaggattcga cgcagcacta cgaacgcctg tttaccgacg 3420 aggagctgga tatgctcgag cacggtggca gccaggtagt gaagaatgaa cccgaggtgt 3480 acgggaagga actggaagaa cgattgttcc cgatgaacga agaagaggtg ctgctacgtg 3540 ccaagcggaa cgcggatgaa caaaaaaagg gagcaacgga acgccccgag actacgttgt 3600 tgtacgccga agagaagtgc caagagagtg agggggtgga gacgctgtcc acccgctcaa 3660 agcagtacga aggagcactc gaaacgatca cagaggacgc atctggcgcc aggtcaagtc 3720 agttctcggc agtcattgga caagtgagta caggtcaaga aaggacagaa gctcagaagg 3780 ccgaggagga cgaggaacgt actaagggga aggattcgac gcagcactac gaacgcctgt 3840 ttaccgacga ggagctggat atgctcgagc acggtggcag ccaggtagtg aagaatgaac 3900 ccgaggtgta cgggaaggaa ctggaagaac gattgttccc gatgaacgaa gaagaggtgc 3960 tgctacgtgc caagcggaac gcggatgaac aaaaaaaggg agcaacggaa cgccccgaga 4020 ctacgttgga cgccgaagag aagtgccaag agagtgaggg ggtggagacg ctgtccaccc 4080 gctcaaagca gtacgaagga gcactcgaaa cgatcacaga ggacgcatct ggcgccaggt 4140 caagtcagtt ctcggcagtc attggacaag tgagtaccgg tcaagaaagg acagaagctc 4200 agaaggccga ggaggacgag gaacgtacta aggggaagga ttcgacgcag cactacgaac 4260 gcctgtttac cgacgaggag ctggatatgc tcgagcacgg tggcagccag gtagtgaaga 4320 atgaacccga ggagtacgag aaggaactgg aagaacgatt gttcccgatg agcgaagaag 4380 aggtgctgct acgtgccaag cggaacgcag atgaacaagg gaagccgaca ctcgcggaaa 4440 tgagtgccga gcttgggata ccggaagacg tgttgaaacg tacccgggag gtctcatctg 4500 gagatctcgg aacgccagag tattggctgg actggtacgc tcacacgcta gagacgtcga 4560 ctgaagcgaa acgtgccaat cgggacttca aggatgtcgg aggaacggga gagaagtcga 4620 cgacggtcgt tggttccgtt acgacggacg aggacgagcg taagggttgt acggagatgt 4680 cggaggacgc actggagaac gagttcgtgc agaacgtttg tgtcggactc gaagaggacg 4740 tcgtaccaat ctcggagctc cctgcagagg agaagggaac gttaccattt cggtggcgtt 4800 ccataattcg taaacaagta tacgaactcc tcaaacaaga gcagaacgct acgaaggacc 4860 gtcaatccga cgttcctgag agcggggaaa acggtgatgc tgaagacgac atcccaccct 4920 tgcgcgacaa agagaacaga gttttcttgg acgaggactc attccgagga tacctcgtcg 4980 aagtgggtgg agcgctggct gagacgttcc aaaatcgagc gttggcctgg gcacgtgact 5040 atttcgagac agaagcttcc gttattcgcg acaagctatg cgacagacgg gacgagacgt 5100 caaaaatagt ggctgcgacc gttgcgacaa gttccagaaa gagggtgact ttcggtgcga 5160 ctatcaagga cggagatccc aaaataggag aagaggagcc cgaggtttat tccttaaacg 5220 tgagaagagc tcccaagccg cggagaagcc ctgggctgcg cgaagtgagc ggcgatgacg 5280 tcttcgacga cggtgaaagt gtcgtgccgg atggcaagcg tgtcatctgc agcgtcggtg 5340 gcgtgcaagc gctgtcggac ggctttatcg attgctgccc gtccgaaatg ctagccgata 5400 caggtgcggt cgccagtctc gtcgataaac gcgtgctgaa gcgtctcgga cgagcctccg 5460 aacctctacg accttatact gggggcttgg atagtgtctc ggggcacaag attcgcgtta 5520 gtggggttat cgacttgccc gtcacgcttg gaacgctgga gaagacgctt cctttcgtcg 5580 tgaccgatca cttgtttgtg gacgcaattc tcggaacgga ctcgctaagg gcgttccgcg 5640 cggtgatcga cctcgaggag cagtcgatga cactgaagga gacgggggac gtggtcccgt 5700 tgggtgcgac aagggtagaa gaaacctacg cggctacgat atcgtcgacg gtgcgtttag 5760 aacccggacg tcaggcctta gtgagatcga gcgttcgcgg aacgatgaag gaccactcag 5820 ttgtgttggt cgagggcgtt cccggaacgg acgaggcttt gagagtcgca aggacgttgt 5880 gtaccgtgac ggatggaacg gtgttggtcg aagtgtgtaa tgcttccgcg gaagaggtag 5940 agatcaagtc tggcgcgtac gtcgctgctg taaccatcgt tcccaagtcg gcgttcgcaa 6000 ctagagtctc taagtcagat gaaacgacga ggaacgtaag cgcagtgctg agtacggtga 6060 aggggaacgt gccggctgaa gctggaacga tcgaggctga gatgagtgcc gccatggacg 6120 acagcgagga agacgacttc gaagtggact tcgaagactc gtcactcgga gcagaacaga 6180 ggggtctctt cgctgaaggg cctgagagac ttattcgtcg aaacttcaaa gaagcctgga 6240 aggacggacc tgctacgttt cagcatcgac accggagatc acgcgcctat taaacagcct 6300 ccgtacagag tgtcgaaggc tgaaggagat gtcatggaag cagagattca agagtaccta 6360 gatttcggac ttatcagacc gtcgactagc ccgtgggcct gtcctgtgct gatgatacgg 6420 aagcctgatg gtggcgtaag attctgcatc gattatcgga aactaaacgc tgtgaccgtg 6480 aaggacagtt acccaatgcc tttgatcgac gacatcctgg acgttctggg gaacgcgaag 6540 cttttctcca ctatggacat cgcttcggaa tattggaacg ttccaatgga tctcgacagc 6600 gtggagaaga cggcttccac gagcaaattc ggcctctacg agtggttggt tatgccgttt 6660 ggcttgtgta acgccgtgcc tgcattcgag cgtctgatgg agaacgttct cgttgatctc 6720 aagtggagga cgtgcctcgt ctacttggac gactgtgttg tcttcagtga cgacttcccg 6780 acacatttga ttcgagtacg acaggttctg gaacgtttcc gagcggcagg gttcaagttg 6840 aaaatgaaga agtgccattg aagacgtgac caagtggcgt ttctagggca tatcgtgact 6900 ccgactggaa tcctaccgaa ccctgagaag gcaaaagcgg tgatgaacat cgagagtccg 6960 catgacttgc acacggttag agcatttctg ggtctgacaa gctactttcg acgttacata 7020 ccgggattcg ctgcgatctc tgcgccgctg gaacgcttga agcagaagga cgtcgatttc 7080 aggtggaacg acgactgtga gggcgcgttc cgacaactac aacgagcgtt agtgaaacca 7140 ccgatactgg tgtatccaga cttcaagaag aggtttaagc tctatgtaga ttcgtcacac 7200 ttagcggtgg gagcttgtct gatgcaagag gtcgacaaga gagacagggc gatcgcgtac 7260 gcgagtaaga tgctggttgg atcgcaacgg agctgggtta acaagacaag tggaacgaca 7320 gaaattaagt gctggggaat cgtgtggtcg acgcgcaagt tccggtgtta tctgagtcac 7380 gcggaatttg atctgtacac ggaccatcaa gctctcacgt ggatctttgg cgagacaaca 7440 cgaacgtcaa acgccaagtt ggcacgatgg gccatggagc tgtcgcagct acggtttaag 7500 atataccaca agcctggaac gtcgatggga cacgcggatg gtttgtcgag actgtatcac 7560 cgaccggatg ctggtattgt tagcgccatc cgaatggcgg accttctcaa cgacagtgag 7620 gaagagactc ctggagtgca agtgccgatt tcggacgaag tgcagactca atcgggaacg 7680 caagccttaa acggagcgct gggtcggaac gtcaccgacg ttccaatccc agtcgggaag 7740 cctgccgaga ctacggatcc taacggagag actgaaagaa gtaaccaaca gacagaggat 7800 gcgtccgtag ttgtcgagcc tctcacgcaa gcggagcagg aagaagactc gcaagggaga 7860 gctctacagg cgaactcatc accgattgac gtgtttggat tggactatga caagttcgtg 7920 gctgaacaag aacgtgtgcc ctggatgcga gcgctgaagg cgttcctgaa agatggagcc 7980 ttggctcttg atccacaact aagagtgagt gtgctgaaga tgtctacgca ctacttgatt 8040 cgaaacggag ttctggcacg tctcgtacat ctaggagcac gtgccggtcc agccagaact 8100 gtgtgcgttc caactgtccc gttaccgttc attgagacgg tcctgcacta ttgtcacgcc 8160 gacatcttct ctgctcactt agggagaacg aagacgacgg acaaggtgag acgccacgcg 8220 tattggcatg ggtggaggaa ggacgtgata gagtacgtgc gtgaatgttc tatctgcagt 8280 ggaggaaagg gacatagacc gtggagagcg ggactgatgc aacggatgcc agttcaggac 8340 ttgtctggcc cgttctcgct actagtagtc gacgcaattg gaccattggt cgtcactcct 8400 cgtggcaaca agtacatcct ggtgtttgtg gactacttca caagatgggt cgaggcattt 8460 gcggtcgctt cgttggacac gatcgcgttt gtgaacgcaa tgatagaggg tgttatctgc 8520 cgtcatggag taccggaacg tctactaagc gatcgtggtt ccaacttcac gtctaatctg 8580 gccaagtcac tgtatcagac gttggggatt aagaagttgt tcggagcggc gtaccacccg 8640 cagacacaag gtctggtgga acgtttcaac ggaacgttga tgggcatgct acgtatgttt 8700 gtgagcgaga cgcagacgga ttgggacgtg tacctaccaa gggtcctatt tgcgtaccga 8760 acggcatatc acgaaggcct cggtgacacg ccgttcttta gtctgtatgg acgtgacccg 8820 gtactaccta tcgacatagc gttcctgaac acaggaaggg actggaagag taacgaagtt 8880 gcgacgtacc gccggaaatt gtatcgctcg ttgcgtgact cgcgtcgtct tgtggaacga 8940 caactactca aggctcagga tcgacacgag cagaggttgg acaaccaagt gaaggtgaca 9000 tatgcagaag gagacgctgt ctgggtgtac cagtacttta gagcccgagt gggggaacgc 9060 aggacgaaga agctggcgtt ctcctggcac ggtccctacc gtgttgttgg ccaagtcggg 9120 gagaacgcct acaggatcgc gattccgacg cacccgaaca aggtcgtcac ggtaaacgtc 9180 aaccgtctga agcgctttca aggacgctgg agtcgaccct acgcagacga gaagcctgac 9240 agagtcgaag aagaagagga tgaggacggt acgggtccat tggacgtcga ggacccgccg 9300 tcgacgagct ttgtggaacg tctctcagtt ggcgaagaag aaacagcgtt ctcgggagtg 9360 tcgtcgccga tagtggacgt gatcgcgaag agagtcgaaa agcgtgagtt gcagtatctc 9420 gtactcaccg ccacgtatga gacgttctgg ttgtctcgag cggcgttggc accggagttt 9480 ggaacgatga tacgtgcctt tgaggacgca gatcggaaga agagaggtct gccggagttg 9540 cgtcggaacg tcagattggt cgaagccaat gctgatgtcg acgatgcgga ggtgttgttc 9600 tagctggcaa cgggagccgg ttagaatgtg tgcagttgtg ggactgcacg agagtgtttg 9660 ggactcgctg agtctcagaa cactgagtga cgtgtacata ttttctattt tggaacgacc 9720 acgggttgtt ctttgggttt tacggagttg ggtattttgg gaacgtcacg agcatacgaa 9780 gactgagtgt gtcagtttgg aacgcgaagg agtttgtgaa gcatcagttt ggaacgtgaa 9840 ggagtttgtg aagcatccgt ttgggacgtg aaggagtttg tgaacaatca gtctggaaag 9900 tgaggaagtt tatgaagcag tagtttggag tccgagggag ttcggatgcg tcggttggta 9960 acaagaagaa gtgttcaaga gagattcctt gacgatagaa acggagagtt aagaacaagg 10020 cacgacaacg agaaacgacg gaacgttacg gttaaaggga acgagagctc gaacgtctac 10080 ctcgcaaaga cgagctactt gccggccttc ttctggtcgt ccaccctctt cgtccttgta 10140 ctttcctcgt cgccgtcgtc gtcctcgacg aattcctcct cttcctgttc gtcttcgtcg 10200 tcgtcggcct cggactcctc gtcgtcgtta cctgaagcgt cttcgccgtc ggccgcagct 10260 tccttctctt cgtcctcgcc ttcatcttcg aactcggacc actcgtcgcg gcgacgttcc 10320 gtaccggacg gtggacggac agttggaact tcgtacgttc ctgcggtgat ctgggccata 10380 atgtcgtctt gagccagctt gacggcgtgg ttgtttacga gcgtctgcca cggttcctcg 10440 ttcttctcac cagcccaagt cacgttgggc ttcgtgcttg acatagtgtc gcggcgaatt 10500 cgtgctaagg cagcaaggga gagccggctc ttctcgtctg catccggatt cagggcttcc 10560 gtagactcga acaaggagcg catgctgggg tacccgtaag tgtcgatatt cgacgggtcc 10620 agcgcgttct cgagcgtggc gtcgtagcgt tccttgtcct tctgctttag ggtcgctagg 10680 tcctcggcaa tgggtccgtt gtagggacgg ccatcgcgtg tggctctgcc gggctggccc 10740 ccgagccaat acatctcagg gcgcttctcc aacatctcga ggaaggcata aaagccccat 10800 gtctctatgc aaatactggt gaaggcccag cgagcttgga cggcgcgcat cttcagctta 10860 cgacgctgag tcatggccgc tgcagtggca agaggagcgt gtagggccca ctcccagaaa 10920 gcacgacgat gggtcatcca gaaacgccag tgtgcgcggt acacttgact gaacttgatt 10980 ggatcgtacc acatgggacg tccggtccaa gggtacgcaa ggcgccaaag cttcttacca 11040 agggcctctg ccttcgccaa gatggcagca atcgcccgac gaacgggaac aggagcagag 11100 cgactcacgt cgagaagatg gccgaactcg ttggatggaa cgtgcgcctt cttgggtttg 11160 ctggcgacgc gagccttctt agtggacgac ttggaagtag agtcgtcacc gctggactta 11220 cgcttgcctc gcgcgggcaa cttaggcgac ttgggtgtct tcttggaggg cgacttcgac 11280 tgcttgctcg acgacgtcgt cgacgccgta gcagatcctg aagagggagc agaatctacc 11340 ggcgcgggga gggccacgac ggttccttgg agcgaagcgt cggtctgacc gttcatgatg 11400 tcctcggcga gctggtccaa gaactggaga cccgacgaca tgctgttggc gcccaggcgc 11460 gcgcagctcg gtccagaact gctgctggaa ggcccgcgca gtgtacccag gggtgccctg 11520 ctcctcatgg tcaagggcgg cgttgaagaa cgcccggaag cgcctcagct cggcggcggt 11580 aagtcgtgtg gacatggtga agagcggatt gtgaaatgag agaaatccga aaacaggaag 11640 ttttcacttg atggctgcca aggggcacgc gagaaggttc gacagttggg acgtggcgtc 11700 gactgaggga cgcaatgatg cttggtgact tgggcggaca aggtttcggg tgaagagcct 11760 tcctaacggc taacggtctg gaggatctgc tgttgtgacg atgtcacttg gaaattgatg 11820 acgatgtggg gagcgttagc ggaatgggcg gaacaggcga actggacgat ggacttcgaa 11880 gtggcggacg agatgagggt cgtcggcagc gctgtgatgg ggatagtgat ctggattgca 11940 acgacgcctc tgcggaacgt gtcgtgggcg ttcctcgacg gaacgatcga gaacgtacgt 12000 gccatctact tcttctggta cacttgctgc gatcgctact tggtggcggc tcgaaacgcc 12060 catgccgcag ctgtgccacc tccagagtac gcgtgcgcgc tagtaaagct actgttcttg 12120 gttcctatcg cggtgctaca ggactacgaa tcccgctttg ggattaccgg tcgaatgtgc 12180 cttaagtggt gtgaggcgtt ccaccattcg tgctgcctgt acgttccaga ggcgagtctt 12240 ttgctatggg gaacgtcctg ccggtacgct cgtgccacca gcgaagctgt ggtagccgtt 12300 gtggatcgag ttggagattt tatcgtggga agctacttgc tgacatcatt actactgtct 12360 atcctaatct acctgccccg cctggtgtac gagagcatcg agggaatact gtgtggctgg 12420 atgggagtga cgttggttgt gttgatcgtg gacgtctacc tggagtttga aattggctgt 12480 tgctactgga acttggctgt gttagttgtc ggttgctaca gttacgtggt gcggtattac 12540 gaagggctcc ggccgagcgc tatggaccag aatgataagg cggcgagacg caagtgggaa 12600 ggactggctg gtcgtataga gcgtcgtgag gaaagagagc gagctagcgt ggaacgactg 12660 cgaggcatgc aggccgaagg aacgtcgtct ggagtaagga acgagagtcc taatgcaagt 12720 ggaacgtcac gtgggaacgt tccagatctg actgtgggag acaccgtgcg acaggctccg 12780 ggcgatgtgg ctcggcgagg tcaccgagcg tcagtcgggg agaat 12825 // ID Gypsy-12_PPa-I repbase; DNA; PLN; 5844 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-12_PPa-I; Gypsy-12_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5844 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 973-973 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(101..1168,1172..2611,2590..5061) FT /product="Gypsy-12_PPa-I_1p" FT /translation="MGKKTTKTAFQRLDKDEILETKVQVDQEVAKPKRRLV FT KKKPLLEEELSLIQVMESEEEVQREQEKFQESLQEIQEPHSDEEENDKEGR FT NPRSQRPTSSKTSKDSIEESRVEKQSVVSLDEVEKMVMRLMEEKNKEFEKK FT MEMNQLLIDSLMRENVRREALLEGQKGKLSSHRAKTDQPKKWKGIEHKRTI FT RRFLKEIEHWHLANDIESDVDKIRTLSALLEGSALDWFDGEIKTNPNYAKE FT TTWAEVCEGLIARFESKWQNFIEGLQLLKLRQEGGKASLLKYVGEFQNQLA FT YTQLDYEKCLLFFFYNGLSVATRKKYWERKTIPTNINDAFALASQLELEEQ FT RAGHSEQSTMTKTEGKTSFQGGIRPFHGSKKPPFLKRKFEESTSQVEKLKT FT KESQGSSTKKAKASSSNVICFKCQQKGHYANDCKNEEVPRKVSELPNASLS FT NETLEVDCLQVMSLSKRVLVKEGDFQGKLTAISLHKKLIYLNTKVGNCETS FT MLIDTGATNSFMNPTCAQRLKLIQEETRRVKISFAQGEEVTNLVVKDVKFK FT CGNHRFQEDFTICNLDGIDVVIGNTFLDFYGIELRWKPKTRVVMVGENGKV FT VDLPFTNLPMLYQSRISIVSQSELEGEQFLFHLRSCDMDPVDDVKSVSFLN FT KNELMKTTSHCANLIADLMYEYGDVLTKELPKQLPPSRMVDHKIDLVPGSQ FT PPSKAPYRLNQRELSELKAQLNELLEKGYIKPSKSPFGAPILFVSKKDGKM FT RMCIDYRALNKITIKNNYPLPRVDDLLDRLGGSRCFSKIDLKSGYYQIRIA FT QEDIEKTACRTRYGSYEFVVMPFGLCNALLPSLLCTATFTTLMNSIFHKES FT DEFVVVYIDDILVFSKSEKDHKLHLRIVLQKLRDNQLYANLEKSMFFLEEL FT EFLGHIINEDGIKPDPKKIEAIRNWKVPKTQKGVRSFLGLANYYRKFIKNF FT SKIASPLTSLLKKENNIIQWNDDCSTSFQEIKDALVSSHVLFYPKFDMEFE FT VHTDASDFAIGGVLMQEKRPVAFESKKLSGSQLRWPTHEKELFAVVHCLKA FT WRHYLGSRRTKVYTDNISLKYFTSKAQASPKELRWYDVIVSMDIELIHKPG FT KDNLVPDALSRREEFMGEKLHDSMTLKTIVYHDDSLLIKGIKKDYEQDKDA FT LEIKEAFAQTKTTREQRRLMGVSSIRNGLIWFKQSRLYVPEGKWRRKLMYE FT IHDSPCGGHRGRKVTFKEVTRSYYWPSVKEDVDQYVKSCLVCQRNKHSTQA FT KNGLLEPLPIPSLPYRDISMDFITSLPKCGEANSIMVVVDRFSKTARFVSM FT TMFPKDSKEAIETAPKLTASVFFDNWISLYGVPTSIVSDRDVKFTTQFWQH FT VMRKLGSKVILTTAWHPQGDGQTERLNGILSMYLRHYVASDHKDWIKWLPI FT AEFSYNTTQNVSLGNTPFQVAHGFNALRPIDLVGVRQSDETTSGFYSVKGA FT KWVAKREAILQTAKARLELAQRRYKKQADRHRRDVQFEKGNKVWLNTSNLT FT CPAHLTPKWTQKWAGPYEIERVLHKNVYVLDIPKRLKWHPVFHVSVLKKFV FT EDEKGFHKEKARIPPEEEIWDQTMGQVEAILDKKQTDVRGVQYLCTFKGYP FT PHEFQWINERNLRHVQGLVTAFNKKVGDYRRPRTTRKQIKTH" XX SQ Sequence 5844 BP; 2094 A; 906 C; 1336 G; 1506 T; 2 other; tgtggtatca gagccagttt tagatcggta ttgagaagta gattggaggg aaatttttgg 60 aaccaatctt tggactaagg caagagaagc attagccaag atggggaaga aaactaccaa 120 aactgccttt caacgattgg acaaggatga gatccttgag accaaagtac aagtggatca 180 agaagtagct aaacccaaaa ggaggttggt gaaaaagaaa cccttgcttg aagaggaact 240 ttctcttatc caagtgatgg aaagtgaaga agaagtccaa agagagcaag agaagtttca 300 agaaagctta caagaaattc aagaacctca tagtgatgag gaagaaaatg ataaagaagg 360 aaggaatcct agatcacaaa gacctacttc ttccaaaacc tctaaagact caatagaaga 420 atcaagagta gagaaacaaa gtgttgtttc ccttgatgaa gttgagaaaa tggttatgag 480 gttgatggag gagaagaaca aggagtttga gaagaagatg gaaatgaacc aacttctaat 540 agactccttg atgagagaaa atgtgagaag agaggcctta cttgaaggcc aaaaaggcaa 600 gctaagttct cacagagcca agacggatca accaaaaaag tggaagggca tagagcacaa 660 aaggactata aggagatttc ttaaggaaat tgaacattgg catttggcca atgatattga 720 aagtgatgtg gataaaataa ggaccttgtc tgcattactt gaaggaagtg ctttagattg 780 gtttgatgga gaaatcaaaa ccaatcctaa ctatgctaaa gaaaccactt gggctgaagt 840 ctgtgaggga ctgatagcta gatttgagag taagtggcaa aacttcattg aaggattgca 900 acttctcaaa ttaaggcaag aaggaggaaa agcctcactt ctgaagtatg ttggtgagtt 960 ccaaaaccaa ctagcctata ctcaactgga ctatgaaaag tgtttattat ttttctttta 1020 taatggattg agtgttgcta caagaaagaa atattgggaa aggaaaacca tacctaccaa 1080 tattaatgat gcctttgcct tggcttctca acttgaattg gaggaacaaa gggcgggtca 1140 tagtgaacaa agcactatga ctaaaacwta ggaaggaaag actagtttcc aagggggaat 1200 taggcccttc catggaagta agaaaccgcc ttttctcaag aggaaatttg aagaaagtac 1260 ttctcaagtt gaaaaactta agactaaaga aagtcaaggg agtagtacta agaaggcaaa 1320 agcaagttct tctaatgtaa tttgttttaa gtgtcaacaa aaaggacact atgcaaatga 1380 ttgtaagaat gaagaagtgc ctagaaaggt aagtgaactt cctaatgctt ctttgtcaaa 1440 tgagactctt gaagtagatt gtcttcaagt tatgagtctt agtaaaaggg ttctggttaa 1500 ggaaggggat tttcaaggaa aactcactgc cattagtttg cataagaaac tcatctatct 1560 caatactaaa gttggaaatt gtgaaacctc catgttgatt gacacagggg caaccaactc 1620 gtttatgaat ccaacttgtg cccaaaggct caagttgatt caagaagaaa ctaggagggt 1680 gaagatttcc tttgcacaag gcgaggaagt gaccaactta gttgtaaagg atgtgaagtt 1740 taagtgtgga aaccataggt ttcaagaaga cttcactatt tgtaaccttg atggaataga 1800 tgtagttata ggaaatactt ttttggactt ctatggaatt gaacttcgat ggaagcccaa 1860 aaccagagta gtcatggttg gagaaaatgg aaaagtagta gacttaccat ttacaaacct 1920 ccccatgtta taccaatcca ggatttccat agtatctcaa agtgagttag aaggagaaca 1980 atttctcttc cacttgagaa gttgtgatat ggatcccgtg gatgatgtaa aaagtgtttc 2040 ttttcttaat aaaaatgagt tgatgaaaac aacttctcat tgtgcaaact taattgctga 2100 tcttatgtat gagtatggag atgttttgac aaaggaactt ccaaaacaac tcccaccaag 2160 tagaatggtg gaccataaga tagatttggt accaggatca caacctccaa gtaaagcacc 2220 ttatcgatta aaccaaagag agttgagtga actcaaagca cagcttaatg agttgcttga 2280 aaaagggtat ataaaaccaa gcaaatctcc atttggagct ccaattcttt ttgtgagcaa 2340 aaaggatgga aaaatgagga tgtgcattga ttatagagcc ttaaataaga tcaccataaa 2400 aaacaactac ccacttccaa gagttgatga cttattggat aggttaggtg gtagtagatg 2460 ttttagtaag attgatctta aaagtgggta ttaccagata aggatagctc aagaagacat 2520 tgagaaaact gcttgtagaa ccagatatgg ttcctatgag tttgtagtaa tgccttttgg 2580 gttgtgtaat gcactgctac cttcactact ttgatgaact caatctttca taaggaaagt 2640 gatgagtttg tagtggtgta cattgatgat attctggttt tttctaaaag tgagaaagac 2700 cataagctgc acctgaggat agtcttgcag aaactaagag ataatcaatt gtatgctaac 2760 ttagaaaaaa gcatgttctt tttggaagaa ttggaatttc ttggacatat catcaatgaa 2820 gatggaataa aaccagaccc aaagaagatt gaagcaataa gaaattggaa agtaccaaaa 2880 actcaaaagg gagtgaggtc ctttttagga ctagcaaatt attataggaa gtttataaag 2940 aacttctcta aaattgctag cccacttact agcctcttga aaaaggaaaa caacatcatt 3000 caatggaatg atgattgtag tacatctttt caagaaatca aggatgcctt ggtatcaagt 3060 catgtcttgt tctatcctaa atttgatatg gaatttgaag tccatactga tgcaagtgat 3120 tttgctatag gaggagtctt aatgcaagaa aagagaccgg tagcttttga aagtaagaaa 3180 ttaagtggaa gccaattgag atggccaacm catgaaaaag aattgtttgc tgtggtacat 3240 tgcttgaaag cttggagaca ctacttggga agtagaagaa ccaaagtata cactgacaac 3300 atttctttaa agtattttac ttccaaagct caagcctcac ctaaggagtt gaggtggtat 3360 gatgtgatag tatcaatgga tattgaacta attcataaac cgggcaaaga caacttggtg 3420 cctgatgcac taagtaggag agaagagttc atgggagaga aactccatga ctccatgaca 3480 ctaaagacta tagtgtatca tgatgactct ctcttgataa agggcattaa gaaagattat 3540 gaacaagata aggatgcact tgagattaaa gaagcctttg ctcaaaccaa aactacaaga 3600 gaacagagga gacttatggg ggtctcttct ataagaaatg gattgatttg gtttaagcaa 3660 agcagactct atgtaccaga aggtaaatgg agaaggaaat taatgtatga aatacatgat 3720 tctccatgtg gtggacatag aggtagaaag gtcactttta aagaagtgac aagatcctac 3780 tattggccct ctgtaaagga agatgtggac caatatgtga agagttgttt agtctgtcaa 3840 aggaataaac actctactca ggcaaagaat ggactcttag aaccattgcc tattccatct 3900 ctaccttata gagacatttc aatggacttc ataactagct taccaaaatg tggtgaagct 3960 aactccataa tggtagttgt tgatagattc agcaagactg ctagatttgt atcaatgact 4020 atgtttccaa aggattcaaa ggaggcaata gaaactgccc caaaattaac agcaagtgta 4080 ttctttgata attggatctc tttgtatgga gtgccaacct caattgtgag tgatagagat 4140 gtgaaattca caactcagtt ttggcaacat gttatgagga aactaggttc taaagtcata 4200 ttaaccactg cttggcatcc acaaggagat ggccaaactg agagactcaa tggaattctc 4260 tcaatgtatc taaggcacta tgtggcaagt gatcataagg attggatcaa atggttgccc 4320 atagctgagt ttagttataa tacaactcag aatgtgtcct taggaaatac accattccaa 4380 gtagctcatg gctttaatgc tctgcgacct atagatttgg taggagtcag acagagtgat 4440 gaaacaactt cgggatttta ttcagttaaa ggggcaaagt gggtggcaaa acgggaagcc 4500 atattacaaa ccgctaaagc tagactggaa ttggcccaaa gaagatataa gaaacaagca 4560 gataggcata gaagggatgt gcaatttgaa aaggggaaca aagtttggtt gaatacaagc 4620 aacctcactt gtccagcaca tcttactccc aaatggaccc agaaatgggc aggtccttat 4680 gaaattgaaa gagtgctaca caagaatgtc tatgtattag acatacctaa aagattgaag 4740 tggcatccgg ttttccatgt aagtgttctc aagaaatttg tggaggatga aaaaggcttt 4800 cacaaagaga aggcaagaat tccacctgaa gaggaaatat gggatcaaac catgggtcaa 4860 gtagaagcga tacttgataa gaaacagacg gatgttagag gggttcaata cttgtgtact 4920 ttcaaagggt accctccaca tgagttccaa tggataaatg aaaggaactt gcgacatgtg 4980 cagggattag tcacagcttt caataaaaaa gttggtgact atagaagacc caggaccaca 5040 aggaagcaaa tcaaaaccca ctaaaggata gatgggttag ttgatggttt gataatttgg 5100 gagagatcaa taaaaagagt gaccaagaag atgaggacat cttcactcca aagtggagga 5160 gggccacaag cctatatgac ttgtaagaaa agagaatcca tgagctatag tataaggagg 5220 aaatataaaa gaaaacttgg aaaagaaggt gatgaaagtt ttcaagagat agaagatttt 5280 gaaaggattc caacccgagg ggacttcgta gagggaaacc ttaagaagct tgtatgaggc 5340 ggatacaaga ctctgagcaa ccaggcctaa acggttggcc tttcctaaat gggtttcaca 5400 ttgagtgata gcaagtcact tccatatggt agggaagggt actagggtga ggcggatcct 5460 agttaagggg ttccacggcc gaggctaagt ctaagtgggg agtaatattt ctattattca 5520 cattgggaga tgtgaacttt caaaatccac ggaattgaga aaacttaagt aagttgaagg 5580 caaaaagaaa ttgcacaaga aacgcgagaa gggggtagca tcccatctca acaaagaact 5640 aataaatcct cctttatccc taccatcttt tgaaggacta gaagtgtgaa tggaggctag 5700 gtagacaaaa gagccttcaa gctacctagg aaagaaagaa ggatgtaagt gcaaaacatc 5760 cattataaac attctgtgag aatggaaaaa gaaagtacac cttatatgtc aatgaggaca 5820 ttgactctcc aaagtggagg aggg 5844 // ID Gypsy-31_PSo-I repbase; DNA; PLN; 8160 BP. XX AC AAQY01000645; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_PSo_; KW Gypsy-31_PSo-LTR; Gypsy-31_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8160 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000645; Positions 11703 19862. XX CC 'TGTA' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 135..2006 FT /product="Gypsy-31_PSo-I_3p" FT /translation="MTTQRDQRAERRAASQERAETTAREAAKQQQQQTVAA FT SATLATGDGGTVLVETEMIRPSSGTTPTNAGLGQSNPGGGTRTSHGLGVTA FT GRSDATGGRAGPAATRGMATAGAGNPNAATSTVTTPSDMTNTGTSTTTNPS FT TTASTVANPSTMTSTTTDPSGMTDTGGVNLTAGSGGGHGGEDPGRAPPAAA FT TMPAARYAGAWADDQPPPRQVIVREKARALKLTKFKGLDDNMPVTMWLKTV FT RAEVRRQAATMGVYWSDGQLYHEVASYLDGEARRWFATVMESVPPEEENIN FT TLAGMLRAKYMTQRTTPEVVDLLNARRQMRGERLVEYAQFLREIGERGDVG FT ESWLVNAFLKGMSSSEGATHVRGHRPQSLDEAVRLAIPHAGEYGEGYGVGL FT DAAMTRWDDREAQHGRGPLAAVTARGGQEQCGLRGNSGTVVTGYGPIWGSN FT QKPPRYDTEGRPVSTGGASSTEWWKAIPPGFSLVPTGKQASPATGLKFQTA FT GGDQFGARGKRTSGEQQASKRPAKALKVAANYGGPTRTRGAPNPTLATREG FT RLRNLERYQERVQAQRATAEAGSTVHRPGVDCFYCGQSGHYARECELKRSD FT LAGGAASPGQDGGEGNVPDQENGPRA" FT CDS join(3366..5273,5277..7106) FT /product="Gypsy-31_PSo-I_4p" FT /translation="MEEQEAETAGFVQPSATKVSSSTRGRRRHGKRYAYTS FT GSVYAHTSVRNMSDEQRPVRVGRLRAVQAPVVDSLPTASVRVKDKQKEIKL FT DTGAFSVAGEEWQSLGERLTTLPPVDYVEGFTGAVSKVLGVWRFRFRTQYE FT QSMVVDALTVEGATSEFLLGEDWMLQQGVKIDFICEMKWYADDVRKVVPFW FT CSTNNRRTQPAKVRVVRRARVRTATCHNVELAVAAPDGTEGLFTPTDHGES FT HILLGPTLTTVRDGKIVVPVMNLYDRTVKLPPKEKLGTWTPTGEEITVLAE FT EGELDRGRVRQWLADLQSDTRSLSNEDELNVGDMSEEDRELLLQILRIYPT FT LLEPREGCPPATTLGVEHEIHTGTEAPIKVRPRRHAHEEQRVIDDNVDEML FT RGGVIEEGHGAWGFPVVLVKKKDGSVRFCIDYRLLNAITVKDVYPLPRIDD FT TLDHLHGARKFTTLDLHWGYWQVPVAEKDRDKTGFVTRRELFRFVRMPFGL FT ANALGTFQRMMDAVLRGLTWQTCLVYLDDVIIFTKGDVTQHVVELAAVLER FT LARAGLSLKAKKCAFAADRLEYLGHELDADGVRPMESLVNSVTNFPVPQNV FT EAVKRFVAMAGYYRRFVPEFASRAAPMTKLLRKWVVWRGEAQQSAFEELKG FT ALTERPILAYPDFSRPFRLVTDASVVGLGVALTQDQGNGEQPVAYASKVNS FT ETVARYGISELECAAVIWAMKLFRPYLYGRRFQLVTDHSALKWLMTSTTLS FT AKLHRWALQLQEYDFDVIYRPGADNVVADALSRAPVGMVAAVEAGDEHQGG FT EQHDEPHHSDEEPRNEAGRHEADEQRRNPGERRVREQQHGDEPTAAGSEGQ FT LTNVLIRQEQDRDKTVQKPKKKSKYGARPIVEVNGVVCIKGNDGSNRVVLP FT MALWAMALRENHDSVYACHLRTPQTLARIATNYWWPDMRVHVRRWVQSCRD FT CGSRKAKAKEVVPPLRSQGVGEPGDRWALDVAGLLPVTPDGNRYVIAAVDY FT ATRYAVVAATPAHTAKDVARFMVEKLVLVYGPMREVVMVGAPELNGQIVEA FT LVNELQTKQLTPVPYRPALLGLVERFHRTWKDRVALYVSANQDDWDRWLPC FT AAYAYNGARHPSTRYSPNELMMGRRLRAPNELLRTRTSRAARTGAFAEHYR FT SLVDRLTRASEVARTALAKDQLRREKYYNRRVRETTRFGVGDLVWVLKPRG FT VRALRSWPTSGWARPGSFRTPATITGRWPGKTTTRG" XX SQ Sequence 8160 BP; 1824 A; 2219 C; 2972 G; 1145 T; 0 other; ggggttttcc gggctgggcc acggacggag ggcctcagcg ggcttagcgt cagtgggcaa 60 cgaacaatgg gaaaggagac ggatgaacta acagaaagtg tattgtgcaa tcgcgaagag 120 ctaaggaaac gaccatgacc acgcagcgtg atcaacgagc ggagcgacgc gcagcgtcac 180 aggaacgagc ggagacgacg gcgcgtgagg cggccaagca gcaacagcag cagacggtag 240 ctgcatcggc gacactggcg acgggagacg gaggaacggt gttggtggag acggaaatga 300 tccgtccgtc gtcgggcacc acgccaacga acgccgggtt gggacaatcg aacccaggcg 360 gcggcacgag aactagccac ggcctgggtg taactgctgg acgaagcgac gccacgggag 420 gcagagctgg cccagcagcg actcggggca tggcgacggc tggagcggga aacccgaatg 480 cggcgacgag caccgtgacg accccgagcg atatgacgaa cacggggaca agcacgacga 540 cgaaccccag cacgacggcg agtactgtgg cgaacccaag cacgatgacg agcaccacga 600 cggacccgag cgggatgacg gacacggggg gggtgaactt gacggctgga agcggcggcg 660 gccacggcgg agaagacccg gggcgcgcac caccagctgc agccacgatg ccagcggcga 720 ggtacgcggg ggcgtgggca gacgaccagc ccccaccgcg ccaagtcatc gtacgcgaga 780 aggccagagc gctgaagctc acgaagttca aaggtcttga cgacaacatg ccggtcacga 840 tgtggctgaa gacggtccgt gcagaggtcc gtcgtcaagc agcgacgatg ggagtgtact 900 ggagtgacgg ccagctctac cacgaggtgg cgtcctactt ggacggagag gcgaggcggt 960 ggtttgccac cgtgatggag tccgtgccac ccgaggagga gaacatcaac accttggccg 1020 ggatgctgcg ggctaagtac atgacccaac gcacgacccc cgaggtggtc gacctgttga 1080 acgcgagacg gcagatgcgg ggcgagcgcc tcgtcgagta cgcgcagttc ttgcgcgaaa 1140 ttggcgagcg cggggacgtc ggcgagagct ggctggtaaa cgcgttcctc aagggtatga 1200 gcagctctga aggcgcgaca cacgtgcgcg ggcatcgacc ccagtcgctg gatgaagcgg 1260 tgcggctggc gatcccccac gcgggtgagt acggagaagg atatggcgtc ggcctggacg 1320 cagcgatgac gcgctgggac gaccgggagg cccagcacgg ccgtgggccc ttggcggcgg 1380 tgacggcgag aggtggccag gagcagtgtg ggctgagagg taactcgggg actgtggtta 1440 ccgggtacgg accgatatgg ggctccaatc agaagcctcc taggtacgat actgagggca 1500 gaccggtatc gactggcgga gccagttcaa cggaatggtg gaaggcaatt cctcctggat 1560 tttcactggt tcctaccggt aagcaagcca gtccggccac tggtttgaaa tttcaaacgg 1620 ctggcggcga tcagtttgga gcacgcggga aacgaacgag cggcgaacaa caagccagta 1680 agcgcccggc caaggcgctg aaggtggcag ctaactacgg aggcccgacc agaacgcgag 1740 gcgcgcccaa ccccacgctg gcgacgcgcg aggggaggct acgcaacctc gagcggtacc 1800 aggagcgagt ccaggcgcag cgcgcgacgg cagaggctgg ctcgaccgtg caccgccccg 1860 gcgtagactg tttctattgc gggcagagcg gacactacgc gcgcgaatgt gagctgaaac 1920 ggtctgatct ggccggtggg gccgcctccc ccgggcaaga tggcggagaa ggcaacgtac 1980 cggaccagga aaacggcccg cgagcgtaag gggcccgacc ttacagctcg caggacctga 2040 tccggtaaaa cgacgaagag cgcaaggtgg ccgtggtcat ggccgtggcc acggtcgggg 2100 acaacagcgg gtagcgctcg cagaacgaag gctgttcggg gaagcggggc ggtggcccag 2160 gcaacgggcc aaaccaagcg tcgagtggca gtcaagaatg gggatggcga gacgctgcgt 2220 ccacgtccac ctccccgtag cacgtccccg gcggtagcgg tggcgtcagc ggagacgccg 2280 atgccgcgcc ccaacgccgc gagcaccggc cagacgctag agaatgtgcc gtcagctggg 2340 gatggcgagc ggcacgctgt gagcgcggac cccagccatc tagcaagcgc gcgcacctgt 2400 gagctaccgg aggccaccgc ggcggaaagc gaggcaacgg tgacgaacaa gacggagacg 2460 aataagacgg tgacggacgc tatgacggcg gccacgaaga cggatgcggg ggtgtcgact 2520 ggggatggcg ccccggcaac gccacggaca gcaacgagcg acacgcagga tagcggggtt 2580 tacgtccggc ggggggtggc gctcgacgga ggaaagagcg aggtggacac cttgcccgac 2640 gagaccgagc gggtggtcgt gggcgtgggc aaacagctgg aggcgtgtgg ttgcgacgcc 2700 cccagcaagg acgagctcga tgcaatagtg gttgcgcagc tgcaggccgt acgtgagcaa 2760 tacgcgaacg acggcgtatt ccggacggag gatgagagta cgggcgagga cagcggcagt 2820 ccgagaggta tgaaggggga gacatcggcg gggacgtcag cagaaggcag cgtccacgac 2880 aagccaccac ggacgcagga tgtggtggtc gaagagttac gggcgcgcga cgctacccgg 2940 gccaaggtgc tgctcgcaca ggcgcgtggc cacgaacggc tgcgggagga ggaagctgag 3000 acggcgcggt gagcccgcaa acacgcgaaa cgtgttgaac acgcccgagc ccgacgcgag 3060 cggcgagcgc agcgagcacg tgagcggacg tccacagtta ccatggacac ggacggcaac 3120 aaggacggga aggtgacgcc agatgacgat cagtcagcgg ccgttgacga agagacgcct 3180 ccgtcgggta gtgtgtctct gcagcagtca cgagtgcggc ggcggtacga caagcgtgtg 3240 cgtaaggcac gcaccaagga aaaacgcaac ctacgcgcac tgattatgag gcgagacgcc 3300 tggaaggcag ctactttgcg ttcgaagagc tacataggcg gtgtggcggt cgaaaaacga 3360 aagcgatgga agagcaggag gctgagacag ctgggttcgt ccaacccagc gcgacaaaag 3420 tgtcctcgtc gacgagagga cgccggcgac acggtaagcg ttacgcttac accagtggta 3480 gtgtgtatgc ccacacgagc gtgaggaaca tgagcgatga gcagcgccct gtgcgagtgg 3540 gacgtctgcg cgcagtgcag gcccctgtag tcgactcact tccgacagcg agcgtgcggg 3600 tgaaggacaa gcagaaggag atcaagctgg acacgggggc gttcagtgtg gctggcgaag 3660 agtggcagtc tctgggcgag cggctgacta cgttgccacc cgtggactac gtcgaggggt 3720 tcacgggtgc ggtttcgaag gtgctgggcg tgtggcgctt ccggttccgt actcagtacg 3780 agcagagtat ggtcgtcgac gcgctgacgg tggagggcgc gacgtcggag ttcctactcg 3840 gcgaggactg gatgctgcag caaggggtca aaattgactt catctgcgaa atgaagtggt 3900 atgcggacga cgtgcggaag gtggtgccct tctggtgctc gaccaacaat cggcggacgc 3960 agccggccaa ggtgcgagta gtgcggcgag cacgggtgcg cactgcgacc tgtcacaacg 4020 tggagttggc ggtggcggct cccgacggca cggagggact gttcacgccg acggatcacg 4080 gcgagtcgca catcctgctc ggcccgacgc tgacgactgt tcgagacggg aagatcgtgg 4140 tgccggtgat gaacttgtac gaccgcacag tgaagttgcc accaaaagag aaactgggca 4200 cgtggactcc gaccggcgaa gagattacgg tgctagcgga ggagggcgag ctggaccgag 4260 gacgagtgcg gcagtggttg gccgacttgc agtcggacac caggtcgctg agcaacgagg 4320 acgagttgaa cgtgggggac atgagcgagg aggaccgcga gctgttatta caaatactgc 4380 gaatctatcc tacgctactc gagccgagag aaggctgtcc gccagcgacc accctcggag 4440 tggagcacga gatccacacg gggacggaag caccgatcaa agttcgtccc cgtcggcatg 4500 cgcatgaaga acagcgcgtg attgacgaca acgtggacga gatgttgcgc gggggagtca 4560 tcgaggaggg tcacggggcg tggggcttcc ccgtggtcct ggtgaagaag aaagacgggt 4620 ccgtgcgctt ctgcatagac taccgcctgt taaacgcgat cacggtgaaa gacgtctacc 4680 cgttaccgcg gatagacgac accctcgacc acctgcacgg ggcgaggaag ttcacgacgc 4740 tagatttgca ctgggggtac tggcaggtgc ccgtcgcgga gaaagatcgc gacaagaccg 4800 gatttgtgac ccggagagag ctgtttcggt ttgtacgaat gccgttcggg cttgccaacg 4860 ccctcggcac atttcaacgg atgatggacg ccgtcttgcg aggcctcacg tggcagacgt 4920 gcctcgtgta cctggacgac gtcatcatct tcaccaaggg cgacgtgacg cagcacgtgg 4980 tcgagctggc cgcggtgctt gagcggctgg cgcgcgcggg gctatcgttg aaggcaaaga 5040 agtgcgcgtt cgcggccgac aggctggaat acctcggcca cgaactggat gcagacggag 5100 tgaggccgat ggagagtctc gtcaacagtg tgacgaactt cccagtgcca cagaatgtgg 5160 aggcagtgaa gcggttcgtg gcgatggctg gctactaccg ccggttcgta ccggagttcg 5220 ccagcagggc ggctcctatg acgaaattac tacgtaagtg ggttgtgtgg cgctgaggag 5280 aggcacagca gagcgccttc gaggaattga agggggcgct gacggaacgg ccgatcttgg 5340 cctacccgga cttctcccgg ccattccgat tagttaccga tgcctcagtg gttgggctcg 5400 gggtggcgct aacgcaggac cagggcaatg gggaacagcc cgtggcgtac gcctcgaagg 5460 tgaactcaga gacggtagcc aggtacggca tctctgagct ggagtgtgca gcagtgattt 5520 gggccatgaa gctcttccgc ccttacctgt acgggcggag gttccagttg gtcacggatc 5580 actccgccct aaaatggttg atgacgtcga cgacgctgag cgccaagcta cacaggtggg 5640 ccctgcagtt gcaggagtac gacttcgatg tcatctacag gccgggtgcc gacaacgtcg 5700 tggcagacgc gctgtcacgc gcccctgtgg gtatggtggc agctgtagaa gcaggtgacg 5760 aacatcaagg gggtgagcag cacgacgagc cacaccatag cgatgaggag ccacggaacg 5820 aagccggacg acacgaagct gacgaacaac gccgtaaccc cggcgaacgg cgggttcgcg 5880 aacagcaaca tggggacgaa cccaccgcag ctggttcgga aggccagctg acgaacgtac 5940 tgatccgcca ggaacaggac cgcgacaaga ccgtccagaa gccgaagaag aagagcaagt 6000 acggcgcgcg gcccatcgtg gaggtgaacg gggttgtgtg catcaagggc aacgacggca 6060 gtaatcgcgt tgtgctgccc atggccttgt gggccatggc gctgcgtgag aaccacgact 6120 cggtgtacgc gtgtcacttg cggacaccac agacgctggc gcggattgca actaactact 6180 ggtggcctga catgagggtc cacgtgcgaa gatgggtgca gtcttgccgc gactgcgggt 6240 cccggaaggc gaaggcgaag gaagtagtgc ccccgctcag gagtcagggc gtgggagagc 6300 caggagaccg gtgggcgctg gatgtggcgg ggctgctccc cgttacaccg gacggcaacc 6360 gatacgtgat cgccgctgta gactacgcga cgcgttacgc ggtcgtagca gcaacgcccg 6420 cgcacacggc gaaagatgta gcgaggttca tggtcgagaa gctggtcctc gtgtatgggc 6480 cgatgcgcga ggtggtaatg gtcggcgcac cggaactgaa cggacagatt gtggaggcgc 6540 tggtaaacga gctgcagacg aagcaactca cgccagtgcc ctaccgaccc gcgctgctgg 6600 gactggtaga gcggttccac cgcacgtgga aggatagggt ggctctctac gtgtcggcga 6660 accaggacga ctgggaccgc tggctgccgt gcgcagcata cgcgtacaac ggggcgagac 6720 acccgagcac gcgctacagc cccaacgagc tgatgatggg gcgccggttg cgcgctccga 6780 acgagttgtt gcgaacgagg acgagtagag cagcgaggac cggggcattc gcagagcact 6840 accgatcgtt ggtcgaccgt ctcacacggg cgtccgaagt ggcacgcacc gcgctggcga 6900 aggaccagtt acggcgcgag aagtactaca acagacgagt gcgcgaaacc acgcggtttg 6960 gcgtgggcga cctcgtttgg gtgttgaaac cccgcggggt aagggcatta cgaagctggc 7020 ccaccagtgg gtgggcccgg ccaggatcgt tcaggacgcc agctacgata actgggaggt 7080 ggcccgggaa gacaacgacg agaggctaat cgtgcactgc agcttcctgg tgtcgagcag 7140 ttgcccgagc agctcgctcg gcacggtagc ggaacagata ctgcaagaac tcgccaggga 7200 ggacggcgac tcgcaggatg agaacggcga tgaggacgcg gagacggaga tgcagccggt 7260 aaatgacgag ggcgacgctg aggggtcgcg caccagaacc ggtggatcag gaccgacggc 7320 tgggagccaa cgggcaccaa cgggtacagc ggccgttgaa tctccggcca cgacaggggc 7380 gccagaaata agtcgccagg gtccgagtca aagccctctc ccagctccag aagaacgtgg 7440 tgccgcgggg caggaacaga cgccactcgt ggaaaagaag aggcggcgga aagcggtgca 7500 aacaacccag gacgatgaag acgagcggcc gacgcagcaa caacgacgac aagaagctga 7560 tgtcgcgcgt gaagcgcgag catcccgccg gcaggctgtg cgtgacgagc aggaagccgc 7620 agccgcgacg caagatggtg cagacggtga tcgtgaggta cacggtggcg cggaagccgg 7680 agacggtgac gatcgggcga atgaagcccg agagccacga ggtgacggag gaacaactga 7740 cggcgtcgga accacgcatg acggtgacca cggagccaca gtggagatgg tacaaggacg 7800 aggacggcca cgacgacccg ccccaatgcc cgagttgctg caggtgccaa cagcaggatt 7860 catcgtcgaa cgagcccgac ggcgagttcg taatcgcgct gggcgttacg tgcaggaaca 7920 cgaagtggag tacggggtac agcgtggggg tcccatgggc cggcgatggc tgtctgcaga 7980 ggaattcgag gcgctcgacg acgcccacaa gatcgaggac gatcttgatg ccggggatgg 8040 cgtgtagtag ggtgccctgt cactgggctg caggacgcga tcaagcgggg ggtcacgtca 8100 cgattgactt gacacaataa gtggtgtggc gcacagcgtg gagacggtgg cgcagctgta 8160 // ID Copia-19_PIT-LTR repbase; DNA; PLN; 307 BP. XX AC AATU01002448; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-19_PIT_; KW Copia-19_PIT-I; Copia-19_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-307 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002448; Positions 58006 58312. XX SQ Sequence 307 BP; 75 A; 71 C; 82 G; 79 T; 0 other; tgctcatctg caatgcagca cggtcattca agctgagacc aggcatatag gagacaagaa 60 gaaccacgtg ccagtaagca gggacgcgtg agttcaacgg gggtttttag ctgttgatgg 120 tgcgatgcat gtccaacggg ttttcctccg cgtgcatggc acgttgcgta tgagagactg 180 cgcggagtag aaaggtttaa cgatgaatgc attcttgctt ttgctttcct gacaaacaag 240 tcaagtttct ctgacttact acttgtccgc gagaccatta cgctgcagtc tactgcgtga 300 actacca 307 // ID Copia-5_PIT-I repbase; DNA; PLN; 4133 BP. XX AC AATU01002448; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PIT_; KW Copia-5_PIT-LTR; Copia-5_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4133 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002448; Positions 68280 64148. XX CC Positions [1339-1845] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS join(508..1845,1849..3855) FT /product="Copia-5_PIT-I_1p" FT /translation="MENAKDITLIEVKEKLLKEHERLQKKGTTEKAFPVSG FT SGGRFKGGRSNGRKGNNPRKSGGSFKGKCFKCNRVGHMKRDCPGGSNGAED FT DAVFAVGEERFAGWLIDSGATSHMTPYREDLFDYEGMVSDIEVAIADGKKL FT QVAGRGTVKLTGMDSKRIKMVEVLYIPGLDRRLLSVGKLAERGLSVEFQRS FT SCVIWGKNSAVALGKKVGKAYVLDCEQEEARFVEYAGVDNQWELWHARMGH FT PSENGMAKTQSATNGMPVVNRGIKTLCGGCMKGKHTVTPFPARSTSKTSRV FT LELVHTDVMGPTRTVSKGGARYVLTFVDDFSRFVVVYFMKNKSEVTTKLAE FT FKAFYENQWGERIKCLRSDNGTEYGSKKVTQLCARNGIMHQRTVPYSSQQN FT GVAERMNRTIMEKARSMLHYKGMSTTWWAEAVSTAAYLINRSVNTERSNMT FT PEVGYKEKPRMEHLRVFGSHGYSHIDNAKRAKLDPKSFKCVFLGYAENTKG FT YRVYDLEASKVTVARSVKLDEREVHGIYDTPCSGQGTVIHVTKDTDVAVTP FT NPVEGPVVDEPMEDVEEPVQDIEMDNVEPDQNISVQQSLPLEGETSTGLEL FT AEYHDPQPFHEDRLVFRPEVERSRRSREPVFLLEDGMELDEERKSEGSDGP FT PAPKRPRIDEGGLLAEAVLAYAARINGVPDTPNSYAEAVASNEAAEWRKAM FT EAELLSHKKNGTWTLAPRKTVRPIGCRWVFAKKRDENGRVIRYKARLVAKG FT FKQKYGVDFFETYSPLANMNSIRVVLAVCVADAYEMEQLDADTALLNSELK FT VRVYMEVPFGIKNAQDHVCLLNKAIYGLKQAASAWNKTIHRVFMKNGFKSC FT GADQCVYVKHSKSGYIYICLYVDDMIIAAKTRDEICEVKEALKNAFKMKEL FT GDAKFILGMEIDHDKSAGTLMIKQTRYIDDVTERFGQQNAKGTDNPCASNL FT KLSKEQSPGTKTECTEMQARPYRSLIGCLMFITTCTRPDIAYVVTQLSRFL FT ENPGLPHWRAAIRVLRYLKTTRTLGIVYNRGSGEVTVEAFTDADGGSNIDD FT RRSVSGVMVMIGNGPVVFKSKFQRTVALSSAEAEYMALSLCTQEVLWTRAM FT LKDMGKD" XX SQ Sequence 4133 BP; 1091 A; 921 C; 1277 G; 844 T; 0 other; gattaacagc cgcaacaaga actctaccaa gcacgcccca tcaccttcat tctaccatga 60 cgtccaagcg agccaaagtc ctcctgggta gtggaaacta cttccactgg gagtttaata 120 tgcgcatgac gttggcgcgc aaggggttgc tggtgcacgt ccaagtcgtc aagaaggaag 180 cggaggtgac tgaagcgtgg ctcatcaacg acgctaagca ctggtatcat cgccaagagt 240 cgagctgcac acagacgaag atacgtctgc gaatgactgc taatgcacgc tgacactctg 300 cgtgagttct actaccgtac actctgcaca ccgcgtcgaa tgacacgcgt ctcatgagtc 360 agatgagaac gtcgacatgt caagcattga cgcttcgacg agcttgttgt tggtctccag 420 gcactaggag atccggtcga cgactcaaga cagctagttg tactgctgag cagccttccg 480 acggagtatg agctgattgc gtctattatg gagaacgcta aggatatcac gctcattgag 540 gtcaaggaga agttgttgaa ggagcacgaa cggttgcaaa agaaggggac gacggagaaa 600 gcgtttcctg tgagcggtag cggtggacgg ttcaagggcg gccgaagtaa cggtcgaaag 660 gggaacaatc caaggaagag cggtggtagc ttcaagggca agtgtttcaa gtgtaatcga 720 gttggtcaca tgaagcggga ctgtccggga gggagcaacg gtgctgagga tgacgcggta 780 tttgctgtgg gcgaagaacg gttcgctgga tggctaatcg atagcggtgc gacctcacac 840 atgacaccgt accgtgaaga tctgttcgac tatgagggaa tggtctcgga catcgaggta 900 gcaattgcag atgggaagaa gttgcaggtc gcaggcagag gaacggtcaa gttgaccggt 960 atggatagca agcgcatcaa gatggtggaa gttctgtaca ttccaggact tgacagacgg 1020 ttgctgtcgg ttgggaagct tgcggagcgc ggtttaagtg tggagtttca gcgttcctcg 1080 tgtgtcatct ggggcaagaa cagtgctgtg gcactgggca agaaggttgg caaggcgtac 1140 gtgcttgact gtgagcaaga agaagcacgg ttcgtggaat acgccggggt tgacaaccag 1200 tgggagcttt ggcacgctcg tatggggcat cccagcgaga acggtatggc caagactcag 1260 tctgccacga acggtatgcc agtcgtgaac cgtggcatta agactttatg cggtggatgc 1320 atgaagggga agcacactgt gacaccgttc ccggcacggt caacgagcaa gacctcacgt 1380 gtgctggagt tagtccacac ggatgtaatg gggcctacgc gaacggtctc caaaggtgga 1440 gcacggtatg tgctgacatt tgtggatgat ttctcacggt tcgtggtggt gtacttcatg 1500 aagaacaaaa gcgaagtcac cactaagctg gccgagttca aagcgttcta tgagaatcaa 1560 tggggggaac ggatcaagtg tcttcgctct gacaacggaa cggagtatgg gagcaagaag 1620 gtcacgcagc tatgtgctcg aaacggtatc atgcatcagc gtactgtgcc atacagctct 1680 cagcagaacg gtgtggctga acggatgaac cgtacgatca tggaaaaggc acgaagcatg 1740 ctgcactaca agggtatgtc gacgacatgg tgggcagagg ctgtgagtac cgcagcgtac 1800 ctgattaacc gttcggtgaa cacggagcga tcaaacatga cgccgtagga ggtgggctat 1860 aaggagaagc cacgaatgga acacttgcgt gtgttcgggt ctcatgggta ctctcacatc 1920 gacaacgcaa agagagcaaa gcttgatccg aagagtttca agtgtgtgtt cctcggatac 1980 gcagagaaca caaaggggta ccgtgtctat gacttggaag cgtccaaggt cacggtggca 2040 cggtcagtca agcttgacga acgtgaagtt cacggtatat acgatacacc gtgctcggga 2100 caaggaacgg tcattcacgt gaccaaggac actgatgtag cagtgacccc aaatccggtt 2160 gagggtccag tagtggatga acctatggaa gatgtcgaag aacccgttca ggatatcgag 2220 atggacaacg tggaaccgga tcagaatatc agtgtacaac aatcactgcc acttgaaggt 2280 gagacctcca ctgggctgga actggcagag taccatgacc cgcaaccgtt ccacgaggat 2340 cgcttagtat tccgtccgga agtagaacgc tcaaggcgtt ctcgagagcc agtgtttctt 2400 ttggaggacg gtatggagct tgatgaggaa cggaagtcgg aaggaagtga cggtccacca 2460 gcacctaagc gtccaagaat agacgaaggt ggcctacttg cagaagcagt gttggcgtat 2520 gcggcaagga tcaacggtgt acctgacaca ccgaactcgt acgctgaagc agttgcaagc 2580 aatgaagcag cggagtggcg gaaggcgatg gaggcggaac ttctatcgca caagaagaac 2640 ggtacttgga cacttgcacc gcgaaaaacg gtccgtccca ttggttgtcg ctgggtgttt 2700 gccaagaagc gcgatgagaa cggtcgagtg attcgttaca aggcacggtt ggtggctaag 2760 gggtttaagc agaagtacgg agttgacttt ttcgagacgt actcccctct ggcgaacatg 2820 aactcaatcc gtgtagtctt ggctgtgtgt gttgcggacg catacgagat ggaacagttg 2880 gatgcagaca cagcgttgct gaacagtgag ctgaaggttc gtgtctacat ggaggtaccg 2940 ttcggcatca agaacgccca agatcacgta tgtttgctaa acaaggcaat ctatgggctg 3000 aagcaggctg cgagcgcctg gaacaaaact attcacagag tcttcatgaa gaacggtttc 3060 aagagttgcg gtgcagatca gtgtgtgtac gtgaagcatt ccaagagcgg ttacatctat 3120 atttgtctct atgtggacga catgatcatc gctgccaaga cccgcgatga gatctgtgaa 3180 gtcaaagagg ccctcaagaa cgctttcaag atgaaagagc ttggcgacgc gaagtttatc 3240 ttggggatgg agattgacca cgacaagagc gctggaacac tgatgatcaa gcagacgcga 3300 tacatcgacg acgtaacgga acggtttggg cagcaaaacg ctaagggtac cgacaaccct 3360 tgtgcgtcca atctcaagtt gtcgaaggag cagtcaccag gaacgaagac ggagtgtacg 3420 gagatgcagg caagaccgta ccgctcccta atcggatgtc tgatgttcat tacgacgtgt 3480 actaggccgg atattgccta cgtggtgacg cagctgtcgc gattcctcga gaaccctggt 3540 ctaccgcact ggcgagctgc gattcgtgtg cttcggtact tgaagacgac acgcacactt 3600 gggatcgtgt acaacagagg atcgggcgag gtcacggttg aggctttcac ggacgctgac 3660 ggggggagca atatcgatga taggcgttcc gtgtcaggtg tgatggtgat gatcgggaac 3720 ggcccagtgg ttttcaagtc gaagtttcag agaacggtag cgctgagttc tgcagaagct 3780 gagtacatgg cgttgagcct gtgcacccaa gaagtacttt ggacgcgcgc gatgttgaag 3840 gacatgggaa aggactagga agaagctacg cagatctggg aagacaacca aggggcgata 3900 gcactggccc tgaacgctgg ctatcatgcc agaactaagc atgtcgacat caagcaccac 3960 ttcacgaggg aaagtgtagc gaacggaacg gtcaagatcg actacgtgga cactaagcac 4020 caactcgcgg acatgctcac aaaggggctt ggcaccaagc cgctcaagta tctgcggaac 4080 gctagcggta tcaaggagaa ggtggacacc gtgcagtaag cggtgagtgg gat 4133 // ID Copia-47_PIT-LTR repbase; DNA; PLN; 330 BP. XX AC AATU01004381; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-47_PIT_; KW Copia-47_PIT-I; Copia-47_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-330 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004381; Positions 269195 269524. XX SQ Sequence 330 BP; 84 A; 88 C; 86 G; 72 T; 0 other; tgttagacca gaatgaagcg tcgaacccga ttgggcaacg gagtggtgac agcagcagca 60 tcgacgacta agacttcgca agatggcaaa gcgacttgtt gaagttcgac acgagaggtg 120 cattgaagat tcgtggcgac aagcacaagc gcagaaggga gcgtgctggg cggcctgaca 180 ggtgaagcgc ccctggcaag tgcatgcagt gtagttagtt tttcttttca gaggactccc 240 aatcaatcac ttttcaactc accttctagt gcgcacttcc tctcctccac cactcgacca 300 ccaagtttcc tctgcggcca agtttcaaca 330 // ID HOLN1_EA repbase; DNA; PLN; 393 BP. XX AC AB016148; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Equisetum arvense LINE retrotransposon HOLN1_EA, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; HOLN1_EA; LINE; KW endonuclease; long interspersed nuclear element. XX OS Equisetum arvense OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Equisetopsida; Equisetales; Equisetaceae; OC Equisetum. XX RN [1] RP 1-393 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016148; Positions 1 393. XX SQ Sequence 393 BP; 128 A; 56 C; 97 G; 112 T; 0 other; ttggaatgca agaggtctaa ataaccccta gaaatttgag agggtgaaat atagagttag 60 gagaatgaat cttgatattg cgcacttgta ggaaaccaaa atcaactttg agttagatgg 120 ggtgttgtgg catccctatt ggaaatactt cactatcttc tacactaggg ccaaagagta 180 aagggggtgt ttggttactc tcactaataa gaaattaatt gttgagaggg ttgaataaat 240 atgaaagggg gaaatgccta gtactaaggg agacacattt gttatattta acatctatac 300 tagctcctac tccaacaagg agagaactag gatgtgggaa ttgctcaagg agatggagtt 360 tactagaatt tggctcttcc tcggggactt taa 393 // ID TP2 repbase; DNA; PLN; 1679 BP. XX AC X52770; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Physarum polycephalum retrotransposon-related element Tp2. XX KW Non-LTR Retrotransposon; Transposable Element; TP2; KW retrotransposon. XX OS Physarum polycephalum OC Eukaryota; Amoebozoa; Mycetozoa; Myxogastria; Myxogastromycetidae; OC Physariida; Physarum. XX RN [1] RP 1-1679 RA Rothnie M.H.; RT "Direct submission."; RL Direct Submission to EMBL (24-AUG-1990)Data Library.. XX RN [2] RP 1-1679 RA McCurrach J.K., Rothnie M.H., Hardman N. and Glover A.L.; RT "Identification of a second retrotransposon-related element in RT the genome of Physarum polycephalum."; RL Curr. Genet 17(5), 403-408 (1990). XX DR GenBank; X52770; Positions 1 1679. XX SQ Sequence 1679 BP; 510 A; 257 C; 452 G; 460 T; 0 other; tgttaaaata aatgggatgt gtaaagttta atgtatcatt tttggggaaa atgccccttt 60 gctcatgtaa aaacttgtat gcaaaaacgt gcttttcatg caaattaaaa cattcttgta 120 cacagtctgt tcccttgcca cacctctcta agtgtttccc actctaaggt ccttcccttc 180 caacaggtta tgggcccttg cctctaatcc tgagcatagt agcacacatt gcacatgatt 240 gcagtgtata ttatttagct tttgtgtcac acatacatgc aaagcattct ctctcgcgtt 300 tcgtctcatc tggagcttat ttcacaaggt ttgctctgca tacagattgt ggtgagaggg 360 gaagaggagt gggaacaaag ggttaaggga agttaagaag agttaaggtg gaatgcatag 420 gaatcacaca cacacacttt gcacaactca ttgctccaat atgtttgggc atgagcacct 480 cataggaggg gttgaaatgg ggcaatctca ccttaggggg gaaaggggag tgtgtgtgga 540 aagaggagaa gaagagaaag aagaaagaag acaagtggag agggtgaaat tcccttcaat 600 ggagacatgt ggatggggtg aaatttccca ctaggagaca aatgtatgag gtgcaattcc 660 gcacaaagaa gataagtgga gagggtgcaa tttccttcaa ggagagcaga agtttagggg 720 gggattagta gagaaaatag tcagttggaa tttgggtgaa gagggtaaag ttgttgcaag 780 gagaagagag ataactttaa cactttttta ccagatatca aagaatttgg ttttccagca 840 tggtgataat tatggaattt ggaattggag aagtatttgg aagagtttga gggtgtagtg 900 ggggatatgg aaaggagagg gcatgtggta gtggaagtgg agagagccat gttccttctt 960 tgtagtatac cagaggactg gggatttttg aggtctcaag ttttcttgaa gtaggggtat 1020 aagaatttga cggcagaaaa agtgaaaaca gtattgaggg agtacattta gtttgaagtt 1080 gagagaagtg gcagacgaag gaaaaagtga aggggggagt gatagagcat tgtatggaag 1140 aggaaaaggg aaaagagagg caaaggggga gaagtgtgag aagtgcaaaa ggtggagaca 1200 tagtgcaaaa gagtgcagca caaagtgtta tgcatgtggg aagtttggcc atgtggtata 1260 caggtgccca gaggagaaca agaaatccaa ggagaagtca accagaaagg tctctgcttt 1320 cacctacctg ggagatcctc tttctttatg agtgaccaag gttgtttgct cccttaccag 1380 aatatcctta atgaacactg gctttgggaa ggtcactttg cttcttgttt tatgtgacac 1440 agataccttt tacaggtgga acttttttct ggacattaat ccttgagggg gagtattgga 1500 ataaatgaga tgtgcaagac ttaatgtatt atttttaggg aaaatgcccc ttcgctcatg 1560 taaaaacttg tatacaaaaa catgcttttt gcacaaatta aaacattctt gtgtgcagtc 1620 tgttcccctt gccatgcctc tctaagtttt tcccactcta aggtccttcc cttccaaca 1679 // ID Gypsy-63_PIT-I repbase; DNA; PLN; 4118 BP. XX AC AATU01007040; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_PIT_; KW Gypsy-63_PIT-LTR; Gypsy-63_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4118 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01007040; Positions 24976 20859. XX CC Positions [3320-3811] - Integrase core CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS join(70..936,940..1881) FT /product="Gypsy-63_PIT-I_1p" FT /translation="MGRTNKAEFVTYSMVITPATAETPAETATIKIQKFRG FT GSARDWLKWSSQFRSLARNKQWTDEQKAHNLVALIEGELEPEVEQAAVVAI FT NSGMNFEELFADVGQLSVPADFNEDLDNELWTMKKRRDETVVKFSQHLKEN FT VRMFAELPVNAEEVPEVQQCRYLKRGMPRDRQNKLAAAGIVHDRLSKLVLY FT FSRIEKAEQQLSTREKRQKKHSQERTKDQHRDKDASKSQHKDGKKNSDGFE FT RKPKGDKWCSFHKTNSHNTSDCYTVKKKEKDEQRSAEVKTTSSRKKIIYPR FT IHRDSESDSDSDASEDKELKFVDLVTKKEQAKKGPLRIPVKFKRSGQIFDA FT LLDSGASKSTISGATLAANVNLGRKFLSDSPTVFETMNGSVTSSGTTMVQF FT IFPTLKADSVITHRFEVIENSHNAMAIGRDIMNALGLVLNFKDKVVQWEEY FT SYLLNTGRGGTTSEASEKDEDQQDEYMDETKEIADGSVEPEQLLPDLLNAK FT LGQRYLDLLVEHRTLYAGHLGRMRFNDYLIPLSSDYKPVHAKPYAIPRSQE FT ANAKEFIQRLINADALEQIYDSEMASLAFFLVKKDGSLRLLFDYRWLSKYL FT RRSPY" XX SQ Sequence 4118 BP; 1131 A; 1091 C; 1061 G; 835 T; 0 other; cgttgatata tcaaatttgg aaatgggaaa taagagagtc aagacaatca acatatcgcc 60 ttatcaagca tggggcgcac gaacaaggct gagttcgtga cctactcgat ggtcatcaca 120 cccgctaccg ctgaaactcc tgcggagacg gctaccatca agatccagaa gttccgtgga 180 ggaagtgctc gtgactggct caagtggagc agtcaattcc gcagtttggc gcgcaataag 240 cagtggacag atgagcagaa ggctcacaac ctcgttgctc ttatcgaagg agagttggag 300 cctgaagtcg agcaagccgc cgttgtcgcc atcaactcgg gcatgaactt cgaggagctc 360 ttcgcagacg tgggccagct gtcggttccg gctgacttca atgaagactt ggacaacgag 420 ctctggacca tgaagaagcg ccgcgacgag accgtcgtca agttctccca gcatctgaag 480 gaaaatgttc gcatgtttgc tgagctcccg gtgaacgccg aagaagtgcc tgaggtgcag 540 caatgtcgct atctcaagcg aggaatgccg cgtgaccggc aaaacaagtt ggcagcagca 600 ggtattgtcc acgacaggct cagcaaactt gtgctctact tttcacgcat tgagaaagct 660 gagcaacaac tctcgacacg agagaaaagg caaaagaagc atagccaaga acggacgaaa 720 gaccaacatc gagacaaaga tgcctccaag agtcagcata aagacggcaa gaagaacagc 780 gatggcttcg agcggaagcc caagggtgac aagtggtgtt ccttccataa gacgaactcg 840 cacaacacca gtgactgcta cacagtcaag aagaaagaaa aagacgaaca aaggagcgct 900 gaagtgaaga caacttcctc acgtaagaaa ataatttgat accctcgtat ccacagagac 960 tctgagtccg actcagactc agatgccagt gaagataaag agctcaagtt tgtcgaccta 1020 gtgacgaaga aagagcaagc aaaaaaaggt ccattgcgca ttccagtaaa gtttaagcgc 1080 agtggccaga tctttgacgc tctactcgat agtggtgcct cgaagagcac cattagcggt 1140 gcgacgctcg cagccaatgt gaacttggga cgaaagtttc tctccgattc acctaccgtc 1200 tttgagacga tgaacggctc ggtaaccagt agcggtacga ctatggtgca gttcatcttc 1260 cctacgctga aggcggactc cgtcatcacc caccgcttcg aggtgattga gaacagtcac 1320 aacgcaatgg ctattggccg cgacataatg aacgctcttg gcctcgtcct gaacttcaag 1380 gacaaggtag tacaatggga agagtatagc taccttctta atacgggtcg tggaggaacg 1440 accagtgaag caagtgagaa ggacgaagac caacaggacg aatacatgga cgaaaccaag 1500 gagatagctg acggttcggt cgagcccgag cagctgctcc ccgacctcct caacgccaag 1560 ctcggtcagc gttacttgga cttgctcgtc gagcatcgca cgctgtacgc tggtcacttg 1620 ggtcgcatgc ggtttaacga ctacttgata ccgctatctt cggactataa gccggtacat 1680 gcaaagccct acgccattcc acgcagccaa gaggcgaacg ctaaggaatt catacagcgg 1740 cttattaatg ccgacgcact ggaacagatc tacgactcag agatggcgtc gctcgcattc 1800 ttccttgtta agaaagacgg ttcacttcgg ctacttttcg attacagatg gttgagcaag 1860 tacttgcgta ggagccccta ctaagtacct cgcatctgtg agatactgat gcgagtttcg 1920 aaagcaaagt gcatcccgat gtttggtgcc aacatgggct attacgctcg caggctcgcg 1980 ataaagagcc gaccactaac ggcgttctgt ttgccgtttg gcaaattcca atacaagcgt 2040 ccatctcgac cgccctggat gagtattaag cttgcatgga gcagatcttt ggagacttgg 2100 agttcgttgt cgtgtactta gacgacatac tggcgttttc gaaggacgag gaagagcacc 2160 ttgagcacct acgtatcgtc gagcacctcg ctcgttacga tgttactcta aacggaaaaa 2220 ggtgctacat actgcgcgaa gaacttgact acctaggcta cacgctctct gcggaaggca 2280 tcaagcctca agcaaagaag atccaggcca tccaacagat cgccgtgcca aggagccgta 2340 agaagctacg acagttttta ggcatgatca actactacag ggacatggtt cccagcaaga 2400 ccacactgtg caagcctctg cacaggttca cgagcagcaa ggtacccttc acatggctac 2460 acagcgatac ggagaccttt cgaaccatcc agcgagcctt tgcagaagcc atactgctgt 2520 attttccgga cttcgacaag ccatttcagc tttacgctga cgcgagtggc acccagcccg 2580 gtggccttgt cgtgcaagag acgaagatcc ttgcgtgcta ctctaggatt ttgaataagc 2640 accaactcaa ctacacgacg atggaattgg aactgctctt cattgtcgaa ctactgagag 2700 agttccgtac gatgctgctt ggctttccgg tggtggtgca aacggatcac aagaacctga 2760 tctaccccac tgagacgagc ctacgcgtca agcgttggaa gttactgttg tccgagtacc 2820 gtctcaccct acattacatc aagggagaga aaaacgtagg agtcgatgct ttctcatgaa 2880 tgaggtttgc aaccgatgag agcaagtcgc tgtacgaaga gatctgtgca acaagtgacg 2940 agccagaatg tgtcgtgcat ggacctgtaa tccgccagca ccaggacgct gatgggatga 3000 tcatgaagac taaagctgcg tgcctggcag gcagcaacaa ccccgacttt caactcattc 3060 cgctattggg ttgcgcactg gtagcatacc agaagcgggt aatcgtccca gagagtctgc 3120 gcaatgacct atttcgtggt accaccagaa tctcggccac ccagctagtg agcgacagtt 3180 taaaacgatg aagcacacgt tctattagcc gaacatgaag accaccatcg ccaggttcgt 3240 caagaagtgc attatctgca agcgtgctaa actccacggc ggtaaacaag aatacggact 3300 actgccacca cgtacaatgc agaccgtcaa tccgtttgac atcgtccacg tcgacctcat 3360 cgacccgtac gaagaacaga attatgggaa taccaatatc aaccaagcca cccgctggct 3420 tgaagctggc gtccagccca acaaagaatc cttgacgaca gccgaaagct tcgatcgcga 3480 gtggctatgc cgatatccga tacctcgcaa ggtcatccac gacaagggct cggagttcac 3540 aggcgaggag ttccaagagc ttctacgcag gtatggtatc aaagccaaac ccataactgc 3600 gaatatcccg caggccaacg cgatctgtga aagggtgcat ctggagatcg gcaatgtcct 3660 ttgctgccac gaaggtgctg actggaggag ggttatctac tacgctactt ccgctgtccg 3720 agccagctac cacagcgttc tcaacgcttc tcctggccaa atcgtgttcg gccaggacat 3780 gatcccgcgc cagcggcacg aggcgctgga gctacttgtc gaaacggaga tacaacgcca 3840 tcctcgccga cagcgaccgc gagaacagta agcggcttga gcacttctac aagcccggag 3900 accaagtgat gctacggacc ccaaataact ttcgagccaa gatcaagcgc gtcgccgacg 3960 gaccgtatcc gatcacggtc gtccacgaga acggcactgt gaccttcgac aagggctcta 4020 cgcaacaaca ggtcagcttg cgccgcaatt tcctgtgctg cctagcacaa cttcatgggg 4080 ggagcatgac acggatggta cgaccgctaa attgcggg 4118 // ID Gypsy-12_PIT-LTR repbase; DNA; PLN; 278 BP. XX AC AATU01002960; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PIT_; KW Gypsy-12_PIT-I; Gypsy-12_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-278 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002960; Positions 111853 112130. XX SQ Sequence 278 BP; 53 A; 63 C; 84 G; 78 T; 0 other; tgatctggct gtatacagcg ctagtgcatg tacactgtat actccaggtg ctctgtatac 60 tccaggtgct ggttgttctg gacacttccg gagtcctggt cggacgcctg ccgtgtatag 120 gcggcgacgc tgtcgtcact tgaagtagag aagtccctcg tagcgggaac gggccccagg 180 cgttgtgtga ggcccagcag tagctaaagg tttgtgaatt cagtttgatt tttgctttct 240 gttgttcaga cggcattcga tccggtgagg aaagatca 278 // ID Gypsy-18_PIT-LTR repbase; DNA; PLN; 1421 BP. XX AC AATU01002850; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PIT_; KW Gypsy-18_PIT-I; Gypsy-18_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1421 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002850; Positions 23968 25388. XX SQ Sequence 1421 BP; 394 A; 329 C; 393 G; 305 T; 0 other; tgtggtaaag tgctttctca gaaataagag aatgggcctg acgcggggtc actatcccga 60 atcaatgaca atttcaagtg attagaaagg atttgggttg gctggcacgg atgcaagttg 120 ccggtggtgg attagccatg acgagcagcg ccccgtatga agtgacgatg gatctggtat 180 gagcgatgta cgagaaggca agatccacca agacttacct cggatccacc cttacttgga 240 ttcacctaaa tggatatggg atatactata caagagtgga tcgggtgtgg atcctatgaa 300 ggaaggatgg taggtgccct ctaaaggtgg atctagtagc cacggctaac gaggagtcaa 360 gatccaccac gaggtgaccc ggatcccatg ctttcgagtt aggatccaag gagggaggat 420 cccgccttga gggacctgga tccagggtat agggatgagg gatacagtgg atctcgagct 480 ttcgtgggac aacggagatc acagacggtt gcgagatgat gttggatgag tggagagctc 540 aggtccacga cgagtgtaca ctttcaagtg aagtggatcc aagcgacctg gatccggatg 600 agtgtaccca taatagggtg accatgatga ttacgtcata tatccggtgg atctgaagat 660 aatacagctg ggatgatggg tcaagggaag aagggacatg cagccgagcc tggtaaggga 720 tttaacagat gaaagacata gaaggtagaa acccaggcag gtataggctt aaatatcaat 780 acagtcctca atttgcacag taacacgcaa gtgccttcct gccctcaaga accggaacta 840 cattggccgt acgagctccg tgaaggttag gaattgcgaa tctagtgttg gtagtgataa 900 ctggataata cattggccag atcctacaac ctagtgagct tttcctttac ttgtgcagat 960 ccgacaggtt aaccgaattt actacttggt cggttatacc ctaggggctc tcaactctca 1020 agatcccgtc acaggaggcg gcaagtacaa cgcaaaggaa cgcaaaggca agggaacaca 1080 cccgcaaggc aaccctacgg ctagatccac gatctaggcc ccggatccat aagctcgaat 1140 attcgcttag gatacggaac catccacgga cgcagagtga agattttcca ctgctgctcc 1200 accccatccc cacgtctcgc caagacactc aagcttcacc acttgaactc ttcggaagtt 1260 actgagagag cagatcccgc cctaccgacg ggtacacaag gtgaggaaag ttcagcagaa 1320 cacggatcat cgggggaccc cctccgttag tcggtgtctg ggcgcagttg gtaagttgga 1380 tccagcaatc tcgcagattt tgctgatccc gctacaccac a 1421 // ID Copia-7_PSo-I repbase; DNA; PLN; 5156 BP. XX AC AAQY01000773; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PSo_; KW Copia-7_PSo-LTR; Copia-7_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5156 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000773; Positions 9613 4458. XX CC Positions [1760-2287] - Integrase core CC 'AATCC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 462..1631 FT /product="Copia-7_PSo-I_2p" FT /translation="MFNLRTELASLPYTVEDVDMVEMLLECVPNQPEFENM FT KAAIRYNPNFGALTPSGVRDMIRAADSRQKEFRGKNGNGQRGSQKHGGNFG FT RSKDKDSKSDGQQQDAAKDAKKKKKLRKCYICESTEHLRADYPDRAKGPSG FT DGANATEQKRKPRGNATIRRDESEPPQPDHEDADVGVVTGVLDAMVIDAGV FT DAEINDENYDVASGDAVQEVDRTDDENELAIDTSGGWWYFDTVANVHVTGN FT RSYYVAFTEDTSQSESIHGVTPALASRIAGVGTVALLTEVDGLQVAVVLDD FT VFYVPGAEYGLLSPGLAVEHGLQFDYDRETMNFRVMDEGRTVIVATPQEAT FT WGFFVSHPSTGAIVGPQDQPLCNVTAVKGLHLWSSGMSAWATRASST" FT CDS 1640..4378 FT /product="Copia-7_PSo-I_1p" FT /translation="MVDRGLMKGMLLTQRQHQGPCDACHVGKQKKKAHRKK FT LDRGLEQPNQVVYVDLLIPSKDNGTRYEAVLIIMDGFSRFVTMHLLTSKAS FT EVINARIKEYILWAERQAGRSKRGVNWIKYLVQQVWTDKGGEFVNDAVSAW FT YRAHGIEHIRVGPKSSQLNLCEGTHQSIVEMTKASMHHAGFPKSLWPEVMR FT SAVCVKNRVYNKDTQGIPFEMMFGAKPDHHHIHKFGALAYVHVPVSPGRRK FT HHGNAKLGFVLGYAEDVVGCKVYFPEEWTAMFVADLRIAEDVVYCVRHEVS FT VEDADQESLRFKRSENEHELDCSMGYHEETITELGQRGTTVAPLTGCESAD FT SQPTELEGGEEASERCAAYEQRPSGAFEDNSAACRQATQTERSCASPAGVE FT GITDAIPSEVGAAMADDMDCAGAVRGYGAHVCAGQHTDTASSLPSRGTVQQ FT QDDQSESGISPMQASLDDEQQRDGDMISTDGDESVAGVCGTVAESLLSEKY FT DDVAESTEDDADEVEPVEAGTADDDEVTVASTITSMEDNGQVELEELPIRH FT EVVDAGPLFPQKQIGKRTHREEAPSEELRVERGAEKQEPKRTRTGLREYHE FT RRRLRYLDDYVANEAQSTARILDENGKPIHASSAKIPKNKREMERSKYREF FT WMQADLEEIGALRAKGVIMEMPKEDVPEGAKPLNTPRVRSLKTDRQGYVIR FT FKSRIVAFGNHQRPGVDFVETFAPVARMSAFRMLVALAAVLHLQLYGGDIN FT TAYLNALLAIRQYLKSIEGFPCEINGHVYVVLKALYGLRQSGRDWNSELSR FT WFLGHGYQRSLTEPCLYYRFEGEVVVLVLVYVDDITVATNCEEIKCKLFEE FT LDKAYGLKDQGRLSEYLGIEVEQTPGAETLRQVKYARDVLETFGYNNAHAL FT WKPTCDLGL" XX SQ Sequence 5156 BP; 1246 A; 1194 C; 1630 G; 1086 T; 0 other; gggtactgag cccaagtacc gtgaaggtcc tgctgcagca gaagtgatcc aagatggcga 60 agcctctcaa gtacacggcg gaggggatcc ccaagaactg ggatgaacga gactggcaga 120 cctacaagtg ggcgatgaag accgtcttcc aggagaagaa gctcaccgag atcgtggagg 180 gttcgattgt gaggtcggag ctgtcgacgg cccagaagca ggaggtgttc gatgagaagc 240 agacgcagat catgcgcatg gtggggtcct cggtgccgcc ggacacgctg caccagattc 300 gcgacaagac cacggggacc gagatgtggg gcgcgctgtg tgagctctac gagggcaaga 360 ccaacaagac ggctatggcc cacagagttc ccaacctcag gaatgatctc tggagcacga 420 agctgagccc tggtggagat gttaataaac acctgagcta aatgttcaat ttacggactg 480 agttggcttc attgccgtat accgtggagg atgttgacat ggtggagatg ctgttggagt 540 gtgtgccgaa ccagcccgag tttgagaaca tgaaggcagc gattcggtac aacccgaatt 600 ttggcgctct caccccgagt ggagtccgtg atatgattcg tgcagctgat tccagacaga 660 aggagttccg tggcaagaat ggcaacggac aacgcggaag tcagaaacac ggaggcaatt 720 tcggccgatc caaggacaag gacagcaaaa gtgatggtca gcagcaggat gcagccaagg 780 acgctaagaa gaagaagaag ctccggaagt gctacatctg cgaaagcaca gaacatctca 840 gagctgacta ccctgatcgt gcgaaggggc ctagcggtga cggagctaat gcgactgagc 900 agaagcggaa gcctcgcggg aatgcgacca tccgcagaga cgagagtgag ccaccacagc 960 cagaccatga agacgcagat gttggggtgg tgaccggtgt gctggacgcg atggtgatcg 1020 atgccggtgt ggatgcagag atcaatgatg aaaactatga cgttgcaagt ggtgatgcag 1080 ttcaagaggt ggataggacc gatgatgaaa atgaacttgc gattgatacc agtggtggtt 1140 ggtggtattt cgatacagtg gcaaatgtcc atgtcactgg gaaccggtcc tattatgtgg 1200 cctttacgga ggacacgagc cagtcggaaa gcattcacgg tgtcactcca gccctcgcat 1260 cgcgcattgc aggtgtcgga acggtagcgt tactgaccga agtcgatggg ttacaagttg 1320 cagtcgtctt ggacgatgtt ttctacgtac ctggagctga gtatgggctt ttgtcgcctg 1380 gacttgcagt agaacatggc cttcagtttg attatgatcg tgagacgatg aacttccggg 1440 ttatggatga aggacgcacc gtgattgttg ccacacccca agaagctaca tggggcttct 1500 ttgtttcgca tccgtctact ggagcaattg ttggtccgca ggaccagccc ctgtgtaacg 1560 tgactgctgt taaagggttg catctttgga gctctggcat gagcgcctgg gccacacgtg 1620 ccagcagtac ctgaagacta tggtcgaccg aggactcatg aagggcatgt tgctgactca 1680 gcgccagcac cagggtccat gtgacgcgtg tcacgtcgga aagcagaaaa agaaggcaca 1740 tcgcaagaag ctggaccgag gcttggagca gcccaaccaa gtggtgtacg ttgatttgtt 1800 gatccctagc aaggataatg gaactcgcta cgaggcagtg ttgattatca tggatgggtt 1860 ttctcgtttc gtgaccatgc acttgctgac aagcaaggcg agtgaggtga tcaatgcgcg 1920 catcaaagag tacattttat gggctgagcg gcaggctggg agaagcaaac gtggtgtgaa 1980 ctggatcaag tacctggtcc agcaggtgtg gactgataag ggaggcgagt tcgtcaatga 2040 cgcggtgagc gcatggtatc gcgcacatgg gattgagcat attcgcgtcg gccccaagag 2100 ctcccagctg aacctgtgcg aggggacgca tcagtcgatc gtcgagatga cgaaggcgtc 2160 catgcaccac gctggtttcc caaagagctt gtggccggag gtaatgcgca gcgctgtgtg 2220 cgtgaagaac agagtgtaca acaaggatac acaagggata ccgttcgaga tgatgttcgg 2280 tgctaagcct gatcatcacc acattcacaa gtttggtgcg ctcgcgtacg tgcacgttcc 2340 tgtctcgcct gggcgacgaa agcaccacgg caatgcaaag ctaggatttg ttctgggcta 2400 tgctgaagat gtcgtggggt gcaaggtata ttttccggag gagtggacgg ctatgttcgt 2460 tgctgaccta cggattgctg aggatgtagt gtattgtgtc cggcacgaag tgtctgtgga 2520 ggatgcagac caggagtcac tgcgtttcaa acgctctgaa aatgaacacg aactagattg 2580 cagcatgggt tatcatgagg aaactatcac tgagcttggg cagcggggaa ctactgttgc 2640 gcctctgact ggatgcgagt ctgcggattc gcaacccact gaactcgagg gaggcgagga 2700 agctagcgag cgatgtgctg cctatgagca gcgcccgagt ggcgccttcg aggataattc 2760 tgctgcgtgc aggcaggcga cgcagacaga gcggagctgt gcaagccctg caggagtcga 2820 aggcattacc gatgctatcc cgagcgaagt tggagctgcg atggctgacg acatggattg 2880 cgcaggcgct gtccgcggct acggagcgca tgtctgtgca gggcaacaca cggacaccgc 2940 atcatcattg ccctcgcggg gtactgtgca gcagcaagat gaccagagtg agtcgggcat 3000 ctcgccgatg caggcatcgc tggatgacga gcaacagcgc gatggcgaca tgattagtac 3060 tgatggagac gaatctgtgg ctggcgtgtg tggaacagtt gcagagtcgc tgctgtcaga 3120 aaaatatgac gatgtggctg agtctaccga agatgatgct gatgaagtgg aaccagtgga 3180 ggccggtact gctgatgatg acgaggttac agtggcgagt actataacat ctatggagga 3240 taatggacaa gtggagttgg aagagttgcc gattcgacat gaagttgttg atgcaggtcc 3300 actattcccc cagaagcaga ttgggaaacg gactcaccgt gaggaggctc cgtcagagga 3360 gttgcgagtc gagcgtggtg ctgagaagca agagcctaag cggacacgca cagggctccg 3420 tgagtaccac gaacgacgac gcctgcgcta cctcgacgac tacgtcgcga acgaggcgca 3480 aagtacagca cgtattctag acgagaatgg caagccgatc catgctagca gcgcgaagat 3540 cccaaagaac aagcgtgaaa tggagcgttc aaagtaccgt gagttttgga tgcaagctga 3600 tctggaggag attggtgcat tgagggcgaa gggtgtcatc atggagatgc ctaaagagga 3660 tgtaccggag ggggccaagc ctctgaacac tccccgggtg cgttctctga agacagatcg 3720 acagggctat gtcatccggt tcaagtcccg gattgtggcg tttggcaacc accaaagacc 3780 tggagtggac tttgtggaga cctttgcccc cgttgctcgc atgtccgcct ttcggatgct 3840 ggtggctctt gcagcggtgc tgcatctaca attgtacggt ggtgatatta acaccgcata 3900 cctcaatgca ctgctcgcga tccgccagta cctaaagtcg atcgaaggct ttccgtgtga 3960 gatcaatgga cacgtttacg tggttctaaa agcattgtat ggtttacggc aatcgggccg 4020 agattggaac tcggagctga gccgctggtt tctgggccat ggctatcagc gctcgctgac 4080 tgagccctgc ctctactacc gctttgaggg tgaagtggtc gtgttggtcc tcgtgtatgt 4140 ggatgacatc accgtcgcaa ccaactgcga agagatcaag tgtaagctgt ttgaggagct 4200 cgacaaggcc tatgggttga aggaccaggg tcgactgagt gaatatctgg gcatcgaggt 4260 tgagcagacc cccggcgccg agacactgcg ccaggtcaag tacgcgcgtg atgtgctaga 4320 gacgtttggg tataataacg cccatgcact atggaaacca acgtgcgact tgggcctctg 4380 agtgacaacg aggagacgga cacgagtttc gagtaccgca aggcgatagg tatgctcatg 4440 tgtctggctg gctacaggta cgctcccaga cttggcgtac accgtgggcc agttgagtcg 4500 cttcgtgagc aagccctcca acaagcatgt gggtgtgtta aaacgcgtgt tccggtatct 4560 ggctggtact gttgactatg gtataactta cgatcgcacg caagctgtgc cggacagcgt 4620 gatgttggat ggctactgtg acagcgactg ggctaacgac ccagcctcac gcaagagcac 4680 agcaggattt gtatttacgt tggctggagg tgctgtatcg tggatgtcac gccgccagtc 4740 aatcgtggct ctctcaacgg ccgaggccga gtatgtggct gcttgtgagg ctgctatgga 4800 ggctgttgct gcgagcaata tcctgcagga ggtgctacct cagcggaatg tgcaactgaa 4860 gcttggtatt gacaaccagg ctgcccatgt tttggcgacc aaagctacct acattcgccg 4920 caccagacac atcgaacttc aatggcattt tgtgcgtgag caagtggaga agggcacgat 4980 ctatctgcac aaagtgaaag gtgccgcgaa tccggctgat gcatttacga agccgctgga 5040 caagcagcga ctgaaagacc tgctgtggct cgtaggtgtg agtggtgcca agtgatgaac 5100 taacccgcct caagaagtgc attccggaag tcgaagcttg agctttgaag gaggcg 5156 // ID Gypsy-10_PPa-I repbase; DNA; PLN; 5339 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-10_PPa-I; Gypsy-10_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5339 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 969-969 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(278..1300,1201..4776) FT /product="Gypsy-10_PPa-I_1p" FT /translation="MAGGQDISMTESSESKLDAIMNALATLSQRTVEIEGI FT IARLHNDGASGMAQSRIHQPQASAPREAALPLVQQGPLVLQRKEPRISLPD FT KFDGTRSKFRGFVNQIRLITALQPERYPTEESRVGLVGTLLTGQALSWFAP FT LFEKRSSILNNFETFLEAFAEAFGKHDKARWATTKIRSLRQGARSASVYAS FT DFRQLACDINWDEEALMSQFYWGLRDDVKDLLLSLLDPRMLNEAISQAVKC FT DNRLFQRRQDQRSRQHTAHHAPTMSASSLNSHSEVEDMQIDAVRVKSLTLE FT EKKRRMEEGLCLYCGEEGHRAGNCPKKQNRRIVRTRGTFVQENEDAQPQRR FT PQSWKLPQEAKSTHCQDQRHVCSGKRRCPATIGTVRLDNSIPQQQSGSSLS FT AQPAHCFTIPLSFGPQKLKTLALLDSRASACFLDEEFAKRHEILLVQKSKP FT VHVEVIDGRPLLSGSVTHESEPIEVTFKDHSSYIIFNIIRTPSNPIILGLS FT WLEMHNPSIDWRLRRMTFPIEHSESKPVRRSRIKKSLFIGARAFVTSSKEG FT TPFVIYATPTSGEKILTANIPEQYKDFEDVFQKKNADMLPEHRPYDCAIDL FT QEGAQPPFGPIYNLSQMELAELRKYIDENLAKNFIRHSKSPAGAPILFVKK FT KDGSLRMCVDYRGLNKVTKKNRYPLPLISGLLEQLGRARIFTKIDLRGAYN FT LVRIKEGDEWKTAFRTRYGHFEYNVMPFGLTNAPAVFQHMMNDIFWEHLDD FT FVVIYLDDILIFSKNVEEHEKHVRLVLEKLRERGLYAKLEKCLFNQTEMEF FT LGFIATTEGLKMDPKKVEAIVSWEVPKTIRDVQCFLGFANFYRIFIKNYSQ FT VAAPLTRLTCKDKLEWGPLAEKAFQDLKTAFTMAPILVHPDFAKAFYLETD FT ASDFAMGAVLLQIGTDEKLHPVAFYSRKFSAAEINYEIHDKELLAIVDSFQ FT EWHHFLEGAAHLVTVYTDHKNLEYFMSARVLNRRQARWNMLLSRFDFVITY FT RPGKQQGLSDALSRRSYLAPKAGEAAFDQQCTTLLKSKQFRLCSAIVPIDA FT DFLNQVRTATIGDSVALDIMQRVNNDKFKVEGDLLYFEERLYIPKGPARLR FT VLQSRHDFPTAGHFGFNKTLELISRDFWWPQMWKDVKDFVLSCDICSRSKN FT PRHRPYGLLQPLPIPRRPWSSVSMDFITDLPPSNSFDSIFVVVDRLTKMAH FT FVPCKKTSSSKDTARLFLDSVYRYHGLPDDIVSDRGTQFVSKFWRSLFEIL FT KVDIKLSSAFHPQTDGQTERVNQTLEQYLRCSINYQQDDWTAYLLLAEFAY FT NNTLHASTQQTPFFSNYGYHPKLDLLSPSTNNNPTAEGFVKQLSELQTTLK FT LQLQTAQEAYKASADKFRNQAPTFKIGDKVWLLRRNIKTKRPCDKLDYRRL FT GPFVIQKQINPVAYRLGLPAAMKVHPVFHVSLLEPYRESSFPGRVQCPPPS FT IEIENHEEYEVEKVLDLRRKWKKLEYLVHWSGYDINERTWEPAKNLINASQ FT KVQEFHRRYPQKPKPFR" XX SQ Sequence 5339 BP; 1502 A; 1156 C; 1234 G; 1447 T; 0 other; gtttgtcgag actacactca tctttcatat cagagctagt tccttcttgt tagagtgtgg 60 attatccctc tgcttgaagg tgctggcatt ttagaggttg cggattaccc tcctctaaac 120 tgatatttct tctattataa tattggagtc ttatctttct tggagagagt ggattacccc 180 tcttcttgaa ggttttaagg cgttttagag gttgcggagt accctcctct aaaccaatac 240 tgccttcttg tagagtcatt tctttccttc tcttagaatg gccggaggtc aagatattag 300 tatgactgaa agttcggagt ccaagttgga cgccattatg aatgctcttg ctacgttatc 360 acagagaact gtagagattg aaggaatcat tgcaagactt cataatgatg gagcatccgg 420 gatggcacaa tcgaggattc accagcctca agcttcagca ccaagagaag cagctttgcc 480 tctagttcaa caaggaccgt tggtcttaca acgaaaggag ccccgaatta gccttccaga 540 caagtttgat ggtacgcgtt ccaagtttcg aggttttgtc aatcaaatta gattgataac 600 agctttacag cccgaacgct atccgacgga ggagtcacgt gttggactgg ttggaacttt 660 gctcacgggg caagctctat catggtttgc tcctttgttt gagaaaagat cgtcaatttt 720 gaacaacttc gaaacttttt tggaggcgtt tgcggaagca tttggcaaac atgacaaggc 780 acgatgggct acaacaaaga tccggtcgct acgacaaggg gcacgctccg cgtcagtcta 840 cgcatcagat ttcagacaat tagcgtgcga catcaactgg gacgaggaag cattgatgag 900 tcaattttat tggggcttga gggacgacgt gaaggatttg ttattatctc ttctcgatcc 960 gcgaatgctc aacgaagcca ttagccaagc tgtgaagtgc gataaccgcc tgttccaacg 1020 tcgccaagac caacgctcaa gacaacatac ggctcaccac gctccaacta tgtcagcaag 1080 cagcctgaat tcacattcag aggtggaaga catgcaaatt gacgcggtac gtgtcaaatc 1140 cctaactcta gaagaaaaaa agcggcgtat ggaggaagga ctatgcttgt attgcggtga 1200 agaaggccac agagctggaa actgccccaa gaagcaaaat cgacgcattg tcaggaccag 1260 aggcacgttt gttcaggaaa acgaagatgc ccagccacaa tagggaccgt gcggctggac 1320 aattcaatac cacaacaaca atcaggttcc tctctttccg ctcagcctgc ccattgcttt 1380 accattcctc tatcttttgg ccctcagaaa ctaaaaacct tagcgttatt agattcaaga 1440 gcatctgctt gctttttaga cgaagaattt gctaagcgtc acgagattct tctagtacaa 1500 aaatctaaac ccgttcacgt agaagtaata gatggacgac ctttattgtc tggtagtgtc 1560 acccatgaat cagaacctat agaggtgacg tttaaagacc atagtagtta tattattttc 1620 aatattatta gaaccccgtc aaaccctatt attcttggtc tttcttggtt agaaatgcat 1680 aatccatcca tagattggag gttacgaagg atgacatttc ctatagaaca ttccgagagt 1740 aagcctgtta gaagatcccg aatcaaaaaa tccttattta ttggagcaag agcgtttgta 1800 acatcgtcca aggaaggcac accgtttgtc atttatgcga ctccaactag cggagagaag 1860 attttgacag caaatatacc ggagcaatat aaggattttg aagacgtgtt tcaaaagaag 1920 aatgccgaca tgctaccgga gcatcgacca tacgattgtg ccatagactt gcaggaagga 1980 gcacaaccac cttttggccc aatctacaat ttgtcgcaga tggagttagc ggagttgcgg 2040 aagtacattg acgagaatct agccaagaac ttcattcgtc attcgaagtc gccagctggg 2100 gcaccaatct tatttgtgaa gaagaaagat ggctcgctgc ggatgtgcgt ggattatcga 2160 ggtctcaaca aggtgacaaa gaagaatcgt tatccattac ccttgatatc aggtcttcta 2220 gagcaacttg ggcgtgcaag gatctttaca aagattgatc taaggggagc ttacaacctc 2280 gtgcgaatca aggaaggaga cgaatggaag acagctttcc gtacaaggta tggccatttt 2340 gaatataatg tcatgccttt cggtcttacc aatgctccgg cggtctttca acacatgatg 2400 aatgacatct tttgggagca ccttgacgat tttgttgtca tctatctaga tgatattttg 2460 atattttcca agaacgtaga agagcatgag aaacacgttc gtctggtcct tgaaaaactc 2520 cgcgagcgag gactttatgc caagttggag aagtgcttgt ttaaccaaac tgagatggaa 2580 tttttgggat tcattgcaac tacggaaggc ttgaagatgg accctaagaa ggtggaagca 2640 atcgtatcat gggaagttcc aaagacgatt agagatgtac aatgctttct tggctttgct 2700 aacttctatc gaatcttcat caagaattat tctcaagttg ctgctccgct cactcggttg 2760 acatgtaaag acaagctcga atggggacct ctagcggaaa aagcatttca agatcttaag 2820 acggcattta ctatggctcc aatcttggta catccggact ttgcaaaggc cttctatttg 2880 gagaccgatg cttcagattt tgctatggga gctgtacttt tgcagatagg cacagacgag 2940 aagcttcatc cggttgcgtt ctactctcga aagttttctg ctgccgagat caactatgag 3000 atccacgata aagaacttct tgcgatagtg gattctttcc aagagtggca tcactttctc 3060 gaaggagctg cgcatctggt gaccgtatac acggatcaca agaatttgga gtacttcatg 3120 tcggctcggg ttctgaatcg tcgtcaagct cgatggaata tgttgctatc caggtttgac 3180 tttgttatta cttatcgacc tgggaagcaa caaggactat ccgatgcatt atcaaggaga 3240 tcgtatctag cgccaaaggc tggagaagca gcgtttgatc aacagtgtac aacattgttg 3300 aagtcgaaac aattcaggct ttgctctgct atagtgccaa ttgatgctga cttcctcaac 3360 caggtacgta ctgcgactat tggagattct gtagccctcg atatcatgca acgtgtcaat 3420 aatgacaagt tcaaggtgga aggagatctt ttatactttg aggagcggtt gtatattcca 3480 aagggaccag cacgactccg agttctccaa tctcgacacg actttccaac tgcgggacat 3540 tttggattca ataagacctt ggaacttatt tctcgagatt tttggtggcc ccaaatgtgg 3600 aaggatgtca aggattttgt cctctcctgt gacatttgtt caagatccaa gaaccctcgg 3660 catcgtcctt atggtcttct tcagccattg cctattccac gtcggccatg gtcttcagtt 3720 tccatggact tcattacgga cctgccgcca tcgaattcat ttgacagcat ctttgttgtg 3780 gtagatcggc ttacaaagat ggcacacttt gtcccttgca agaaaacatc gtcaagcaaa 3840 gacacagcaa ggctcttcct tgatagtgtg tatcgatatc atggtttacc agatgatatc 3900 gtgtcggatc gaggaaccca attcgtatca aagttctgga gatctctctt tgagatattg 3960 aaggtggata tcaagctttc ttcggctttc catcctcaaa ctgacggcca aacggaacgg 4020 gtgaatcaaa ctttggagca gtatttacga tgcagcatca actatcagca agatgattgg 4080 actgcatatc tattgttagc cgagtttgca tataacaaca cccttcatgc gtcgactcaa 4140 caaacaccat tcttttccaa ctatgggtat catccgaagc ttgatttgtt gagtccgtca 4200 accaataaca acccgacagc tgaaggattt gtgaaacaac tatcggagct tcaaactacg 4260 ttgaagcttc aattgcaaac cgcccaagaa gcttacaagg cgtccgcaga taaatttcgg 4320 aatcaggcac ctactttcaa aattggagat aaagtatggc tgcttcgacg gaatatcaaa 4380 accaagcggc catgtgataa gttggactac cggagattgg gaccatttgt catccagaag 4440 caaatcaatc cagtggcgta ccgtctggga ttaccggctg ctatgaaggt acacccagtc 4500 tttcatgttt ctttgttgga gccttatcga gagtcgtctt ttcctggaag agtgcaatgt 4560 ccgccaccta gtattgaaat tgagaaccac gaggaatacg aggtggaaaa ggtactagat 4620 ttgcggcgta agtggaagaa attggagtac ctagtgcatt ggagcggcta tgatatcaat 4680 gagcgcacat gggaaccagc gaaaaatctt atcaatgcgt cgcaaaaggt acaggagttt 4740 catcgacgct atcctcagaa acctaagccc tttcgatgaa agtttttcag tgaagttcct 4800 tctccttgaa gcctcttaat cctcggcctt acaaagaagg gggagaagga acctctaaaa 4860 gacatagtta gagactataa atctgtaacc tgagcccatt cttccatgtt tagtgcttgt 4920 atttttcggt ctgatatgga tagccaagag atagatacca taccagtcat gtcctctcaa 4980 ccgagtatct cacgaagacg accccgagat gaagaaccgc ctgtaccacg aagacgacgg 5040 aggataccta gtaacaggtc gctagtgatt gtgtttgagg tagaacctgc ctatggtgat 5100 cttctcgaag gagtgtttgc agggcatttt cacaatgaag acacggaagt tcatgcctgg 5160 tcagaaatcg aaggcgtagg acactatcgt tggttacaag gaccaatgaa ctacttgccg 5220 cgcgaacaac aattggagta tattgcagac actatgcgac aaattttcaa cttcttacgt 5280 tggtactgac tcgcaatagg agtgcttctc ggagacctcg aagctaaaag ggggggtga 5339 // ID Copia-1_SMo-I repbase; DNA; PLN; 3830 BP. XX AC ADFJ01000003; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_SMo_; KW Copia-1_SMo-LTR; Copia-1_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-3830 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000003; Positions 63837 67666. XX CC Positions [1325-1666] - Integrase core CC 'ATTTT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 2221..3828 FT /product="Copia-1_SMo-I_1p" FT /translation="MLSVVQDIPEGLVETLLAGVDIPEVPRSYVDALASPN FT RDKWVAAFDEEYNSFLKNNTFSLVERAPAGRKLVKSMWIPHPDHTISRYKA FT RLVAKGYSQVAGVDYTETFTPVVKLTTIRTLLALAAAHNWHVHQMDVKTAF FT LNGELDEDIYMEQPEGYKVPGHKSHVWKLHKAIYGLKQASRQWYKKLDDFL FT VKSHFSRSKNDPNLYFKRVGDEVIYIAVYVDDTLLVCNSLAFLAKIKVAFS FT SHFEMKDLGEARYCLGIQIDRRKDGSLFLHQTKYVEDVLQRFGMDSCAPAP FT TPMVAGLRLSKDTSPSTDSDRRKMANVPYRSAVGSLMYLVVCTRPDIAFSV FT SMVSRFLDNPSPAHWQAVKRIFRYLGATTSFGLLYTPKVTGLQGYCAGCPD FT SRRSHTGYFFSLQQAALSWSIKKQSVVACSSCEAEYMAASAACKEAIWLRR FT LLTDMEHSLPGSTAIYCDNQGCIALSKNRKINSRTKHMGTVHHFLRDQYED FT GIVELVYCSTQDMPADVLTKALSQPKFSQFRAALGVCPSG" XX SQ Sequence 3830 BP; 959 A; 993 C; 936 G; 942 T; 0 other; tggtatcgga gcagatctat gatcctggat gacgagaagg agaaaccagc gtaggatgcg 60 taggcgtgca atagcaacag caagacgcat cactaggcgc attaggatga ggagattgct 120 ggctcgggta gttagggttc tagttgcaag ctggaatacg actggaccgt atcgtcttca 180 cgatggcgat gtctgaggct gaccacctcc ccacacacat cgctgccgtt aaggagatcc 240 tcgacgagtt gatggctgtt ggggcacaga tggaagaaga agaagagtgc gaatatctcc 300 tttcgactct cccttcatct ttcgacacgg tgatccagtc tcttcaaccg tcaattcacc 360 gcgttgaaga acacagaact gagacgcaag gccagtgaca aggagacaac ctcgttctac 420 accactgcaa agacgcagca gaagaagaag ccgttcaaag caagtgggag ctcttcatca 480 gggaaattcc caccttgcga gcactgcaag aagaccaatc atgaacctaa gaactgctgg 540 tttaagttcc cagagaagcg gcccaagaaa tcaaaagcac tcctaccgct cgacattgaa 600 gcacatgctt atgtgagcgt acgttcggtt tttctagcct ctaagaatca gagtacgttt 660 tattttgatt caggaacgag tgaccacttg acgcacgatg cgaggtggtt caagacgctc 720 ggcaggagta gctgttggtg atggccgcac tctcaagatc acgggacgtg gaaccaaaat 780 ttagcgccaa tctactttca gttggccagc tcacagactc tggctttgat ctccgcttca 840 gtaaatctga ttgctagttc cttactcctg atggcaatct cggatttgtt ggcgtacgac 900 gtgagaacag aggcctttac gagctctgta tggaaccgat tcacgccaca gagttggtgg 960 agaaacctca tcacctttgt ggcggctaag acacatcatc ttgagctttg gcataaacgc 1020 ttcggccatg ccagcactct acgcattgct caactagcta aggaccagat ggttgatggt 1080 cttgatcctc agcttgacag ctctacgcac atctccttct gcgaaggctg ccagcttggg 1140 aaacagcatc gactcccttt tcctaagcgt ggagcaaaac gagccaaaga agtcttggag 1200 cttgtccata gcgatatttg gggccctgct cctcatgtct cctttggcgg ctccaagtac 1260 ttcattactt tcgtggacga ttacagcagg actgcttggt cacgaaatcc caggctctag 1320 ataagttcga gatcttcaag ctcttgctga aaagcaaact ggaaaaccgt tgaagcgact 1380 cagatcagat ggaggtggcg agtatgtctc tcagaagttt tctgcttttc ttcaaaagca 1440 tggaattcaa agagagcaaa ccgccccgta ttcctctcag cagaacggtg ttgtagaacg 1500 caagaaccgg agcttgatag atgccgcaaa tagcatgctt caagccaacc gcgttcctgc 1560 tatgttctgg gctgaagcag ttatgaccgc ctgctatcta caaaatcggc tccctacaaa 1620 agccgtggtt ggaaaaacac ctgaaggccg caagccagcc atagatcact tgcgtatctt 1680 tggatgtgag gcctacactc acgtccccaa ggccatcaga aagaagctta cgcccaccaa 1740 ggcatctttc ttggctatag cctggagcac aaggctgaca ggattttcaa cttagtctcc 1800 aggaagctga ttatctccca cgacgttcac ttcaatgaga atgccactcg ttctcatcca 1860 gtgggagatc tcttctctcc tgccccgatt cttccaactg aagactcttc ttcaaccttg 1920 gaaccagtgg tagtctctcc tatcttgcca ctgcaagtgg gagcttccag agcgccagat 1980 ctccaggtgg gagatctacg cgttccggtt ttgccaaatt cgccaaacag gggtgcccta 2040 tcccctgttc ggcctcaacc gccactcagg gatgacctat atttcgatgg agaaccaccc 2100 gcggctgccc agcgcacacc agattcccct cgagagcaac ctgcagtacc tccggatcag 2160 cctccccgcc ggtcttcccg gtcgaattta ggtgttcctc cgcagcggtt gattgagaca 2220 atgctctcgg tcgttcaaga cattcctgaa ggcttggttg agacattgct tgctggcgtg 2280 gacattccgg aagttcctcg cagctacgtc gatgctcttg cctctcctaa cagagacaaa 2340 tgggttgcag cctttgatga ggagtataac tcctttctca agaacaacac cttctccttg 2400 gtggaaagag ctccggccgg gcgtaaacta gtgaaatcca tgtggattcc tcacccagac 2460 cacaccattt ctcgctacaa ggctcgcttg gtggcgaaag gctactctca agtggctggt 2520 gtggattaca ctgagacgtt tactccggtg gtcaagctga ctaccattcg caccttgctc 2580 gctttagcag ctgcgcacaa ttggcacgta caccagatgg atgtcaagac ggctttcctg 2640 aatggagagc ttgatgagga catctatatg gagcagccag aaggctacaa ggtcccagga 2700 cacaagagcc acgtttggaa gctccacaag gcgatttatg gcttgaagca agcctctcgc 2760 caatggtaca aaaagcttga tgattttctt gtgaaatctc acttttccag gagcaagaac 2820 gatccgaatc tctactttaa acgagtggga gatgaagtga tttacatcgc tgtgtatgta 2880 gacgacactc tactcgtttg caacagcctt gctttcctag ctaaaatcaa ggtggctttc 2940 tcatctcatt ttgagatgaa ggaccttggt gaagctcgct actgccttgg catccagatt 3000 gatcgcagaa aagatggctc cctctttctg catcaaacca agtatgtgga agatgtcctg 3060 caacgattcg gcatggactc ttgtgcgcct gcacccacgc caatggttgc tggcttaaga 3120 ctttcaaagg atacgtctcc ttctacagac tcggatagga ggaaaatggc gaacgttcct 3180 taccgaagtg ccgtgggaag cttgatgtac ctggtggtgt gcacgcgacc agacattgcc 3240 ttctcagtga gcatggtaag caggtttctt gacaatccaa gccctgcaca ttggcaagca 3300 gtaaaaagaa tttttcggta cttaggagct accacttctt ttggcttact ttacacgcca 3360 aaagtcacag gcttacaggg ctactgtgct ggctgcccag attcacgaag atcacacaca 3420 ggctattttt ttagcttgca acaagcagct ctttcttgga gcatcaagaa acagagtgtt 3480 gtggcctgct ctagctgcga agctgagtat atggctgcta gcgctgcttg caaggaggcc 3540 atctggcttc gtcgtcttct aacggacatg gaacactctc ttccaggttc aacagcgatc 3600 tattgcgaca atcagggctg cattgcctta agcaagaatc gcaagatcaa ttcaagaaca 3660 aagcacatgg gcacagtaca ccattttctt cgagaccagt atgaagatgg aatcgtcgag 3720 cttgtgtatt gttctactca ggacatgcct gctgacgttc tgaccaaggc actctcccag 3780 ccgaaatttt ctcagtttcg ggctgcactt ggcgtctgcc cgagtgggag 3830 // ID Copia-4_PPa-I repbase; DNA; PLN; 4827 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.04, Created) DT 30-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Copia-4_PPa-I. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4827 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 571-571 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(1021..1068,1072..1350,1208..1600,1610..1840, FT 1844..2389,2334..2627,2621..3010,3014..3280, FT 3383..3655,3701..3988,3992..4801) FT /product="Copia-4_PPa-I_1p" FT /translation="MQMSEGDNIVMHIGKLEMAEQLSSIGEKVFDTYFVMA FT LLESLLESYRTLVVILGTRPPAELTLQMVTTQLLQQESHNKNVGSTFKVAL FT AVERKSKSHSHTHTHICRVFTHYKWSQLNYYNKSLTTRMWDQPLRWHWLWK FT ENPSHILILILIYAGSSHDHKKDVKCKYCGKKGHYERECWTKEKDKKSRKL FT KKTFQKEQANTIDKKDRKDDESVFVAALSVTMSDKEWYINFGASQHMTRNF FT SSYKNLPQGPKVYLGNDTGLAIKEKDKISFQFPNNICKDVHDILHVEGLAK FT NLLSVSKMIDQGYKVNFNADTCLMKDNTTIKGVRHGSLYKLLGSLDEDKKT FT FLVTETKQTLNKADLWHQQYGHLGILGLKKLQAGDMVTHLDIGKDTKLEFC FT KRCIYGKQHRDAFPTKGGTCATKFLELIHSDVNGPMRITSHRGTKYFVTFI FT DDFLRKTFVYFMKQKSEVLDNFRIFKALVEKQTGLEIQKLHSDNGGKYTSK FT AFKRFKNYIVTMVESIHLRPSNSFVSNMALKDNFQCLICLNKMELQNTRIG FT HYLRVRGACYSINNFQMHGRQKPLILQHMSLIELLLQLWKEKYPKKFDQVS FT SIKPSIQHLCIFGCNAYVHVPDEKCTKLDPKSKKYIFLGYVEGTKCYHLYD FT VENGSIIKSCDVKFIECEDSKQIEGTLEVSIDKPQEIRIKIEPMESSSDSK FT SDTEDTMGDLDTSKGHQQPTIESSSSVDIQIQARALGQQHAALNPPPIPPP FT PPPSPIMMCARARLLAQQQVTDESTLAWIPSKSFISLAYMAHAFYTSTKEP FT ATITEAMGRDDTWKIFKIKYNANGSVEHYKARLIAKGYVQKEGIDYNETFA FT PVAKMTSICILLALAAVEDLEVHQMDVKTTFLNGDLEEEIYMDQPKGYILE FT DEESPRAWYKKIDDYFASQSLKRSHADPNIYVLWTTNGFFIIIAFYVDDLM FT LVSNNKELLLEIKKNLAERFEMKDLEEIHYILDVQIMKNQKICKIYLNQKY FT VENILERFGMKDCKSLATPLDSNSKLSRDMSPQIPEEVEAMKEIPYQNAMG FT NLVYAMIGTWANISYLVGVVSQYMANLGPQHWIAVKCILQYLQGTSDHVLQ FT YGGSSLSLQVVGYYDADYARDIDTQCSTTSYTFLLASGAISWNSKKQPTVA FT LSTTKAEYMAATHATKEAIWLQRFFKDIGFSQDGPLTIFSDNQSCIFLSRN FT PTFYACTKHVEIQHHFVCEKIESGNINLVFCGTQDMVADVLTKGLTREKHC FT KFKEMMGIIKLS" XX SQ Sequence 4827 BP; 1654 A; 771 C; 972 G; 1430 T; 0 other; tggtatcaga gccttgatac tctagattta tcctttgatg ggtttgagtg aatcaattga 60 ggttgttttg caggacttga tctttcgatc aactttgaag aggttttatt ttttgcatta 120 gcttgagagg agttgaacct ctagtgagcc tagaactcaa gccactaata tttttggtag 180 ctcataattg aagcaacaag gcattaattt tgaaggagaa agagcatttt caaatttcag 240 tgctacaagc aataggtgtt ggagcttgca gctgctgatt tgatcagacc aacaataggg 300 tccaccaaca atagcaggac ttggcagcaa tggcaggact tggcaatggg agtagggcca 360 gcacagtcca aggaactcta gcaagactaa ggagctccaa atttgatttt tttcaagttt 420 ttggacatag tttcacgtag aaagctctaa aaatcacaat ttttggaatt ttgagttgaa 480 tttttttgaa aatgctagtg atacaatttt acatatttta aaaatatttt agaatttttt 540 agaaattctt taagattttt tattaatact caaaaagtct ataagtaggt gtgaaatctt 600 acctagatct catttctatt caccttctat ttcttcttct atttctctaa tttcttctat 660 ttagggcata tttcttataa gatggcaata gaatactata ttatagaaaa atttgatgga 720 gacaattggc acttgtagaa ggaaaaaatc tgatttgtcc tcattgacaa ggatttatgg 780 aaggttgttt gtggaaaata caagaaacct attggatcac ctatagatct agaagagtta 840 gaaaaatggg aagatataga ccagagggca ttatctgtaa tttgcctaca tcttacaggt 900 acagaatttt tgaccacaag taaggcagaa agtgcacagg cagcatggca aggtctggaa 960 gcaacatacg aggtaaaaaa tacttcgagc ctattatact tgatttgcag gttctggacc 1020 atgcaaatga gtgaaggtga caacattgtc atgcatatag gcaagctata ggagatggct 1080 gagcaacttt cttctattgg tgagaaggtt tttgatacat actttgtaat ggcattatta 1140 gagagtctct tggaatcata ccggacattg gtggtgatac taggaacaag acctccagca 1200 gaactaacat tacaaatggt cacaactcaa ctattacaac aagagtctca caacaagaat 1260 gtgggatcaa cctttaaggt ggcattggct gtggaaagaa aatccaagtc acattctcat 1320 actcatactc atatatgcag ggtcttcaca tgatcacaag aaggatgtca aatgcaaata 1380 ttgtggcaag aaaggtcact atgagagaga gtgttggacc aaggagaagg acaagaagtc 1440 aagaaagtta aagaagactt ttcaaaaaga gcaagctaat acaatagaca agaaagatcg 1500 aaaggatgat gaatctgtct ttgtagctgc gttatctgtc actatgagtg acaaagaatg 1560 gtacatcaat tttggtgctt ctcaacacat gacaagaaat tgaagttgat tttcaagtta 1620 caaaaaccta ccacaaggcc ctaaagtcta tttaggcaat gatactggac ttgccatcaa 1680 agaaaaggat aagatctctt tccaatttcc aaacaatatt tgcaaggatg tacatgatat 1740 cttgcatgtt gaaggattgg ccaagaattt gctttctgtt agcaaaatga tagatcaagg 1800 ttacaaagtc aattttaatg ctgatacatg tctcatgaaa tgagacaata caaccatcaa 1860 aggtgttaga catggtagct tgtacaagct attgggatct ttagatgaag ataaaaagac 1920 ttttcttgtt actgagacaa aacaaacttt gaacaaggct gatctctggc atcaacaata 1980 tggtcatctt ggcattttgg gcttgaagaa actacaagca ggtgatatgg tcactcattt 2040 ggacataggc aaggacacaa agttagagtt ttgcaagaga tgcatttatg gaaaacaaca 2100 tcgtgatgct tttccaacaa aaggtggtac ttgtgcaaca aaattcttgg aattgataca 2160 ttctgatgta aatggtccta tgaggataac atctcataga ggaacaaaat actttgttac 2220 ttttattgat gattttttaa gaaaaacttt tgtatatttc atgaaacaaa agtctgaagt 2280 cttggataac tttaggattt ttaaggctct agttgaaaaa caaacgggct tagagattca 2340 aaaattacat agtgacaatg gtggaaagta tacatctaag gccttcaaat agttttgtga 2400 gcaacatggc attgaaagat aattttcaat gccttatatg cctcaacaaa atggagttgc 2460 agaatacaag aattggacat tatttgagag tgcgaggtgc atgttacagc ataaacaact 2520 ttcaaatgca tggtaggcag aagccattaa tattgcaaca tatgtcctta atcgagctcc 2580 tactacagtt gtggaaggaa aaatacccaa agaagtttga tcaagtataa aaccttcaat 2640 acaacacctt tgtatctttg gatgtaatgc ctatgtacat gttccagatg aaaaatgtac 2700 aaaacttgac cccaaaagta aaaaatatat atttctgggc tatgttgagg gtactaagtg 2760 ctatcatttg tatgatgttg aaaatggctc cataattaag agttgtgatg ttaagtttat 2820 tgagtgtgaa gactctaagc aaatagaagg aactttggag gtttctattg ataaacctca 2880 agaaataagg attaaaattg agcctatgga atcttcatca gattcaaaaa gtgacactga 2940 agatacaatg ggagatttgg acactagtaa aggtcaccaa caaccaacta ttgaatcttc 3000 atcttctgtt tgagatattc aaatacaagc tcgagcactt ggacaacaac atgcagcttt 3060 aaatccacct ccaatcccac ctccacctcc accttcacct ataatgatgt gtgcaagagc 3120 tcgacttttg gcacaacaac aagtaactga tgaatcaaca ttggcttgga ttccttccaa 3180 gtcattcata tctttagcat atatggcaca tgctttttac acaagcacta aagaaccagc 3240 tactatcact gaagctatgg gaagggatga tacttggaag tagaaagaag caatggattc 3300 agagtaccag agtctcattg acaacaagac ttggactttg acaccattac cagcaaataa 3360 aaaatcaatt ggttgcaaat agatttttaa gatcaaatat aatgcaaatg gttcagtgga 3420 gcactacaag gcaagactca ttgcaaaagg ttatgtacaa aaagaaggta ttgattacaa 3480 tgagactttt gctccagtgg caaaaatgac ctcaatttgt atacttcttg cactagctgc 3540 agttgaagat ttggaagttc atcaaatgga tgtcaagaca acattcttga atggagatct 3600 tgaagaggag atatatatgg accaaccaaa aggctatata ttagaggatg aagaatgatt 3660 ggtgtataaa ctctctaaaa ctctctatgg gctcaaataa tctcctaggg catggtacaa 3720 gaagatagat gattattttg cctcacaaag tttgaaaaga agccatgctg atcctaacat 3780 ttatgtattg tggacaacta atggattctt catcatcatt gcattctatg tagatgactt 3840 gatgcttgtg tctaataaca aggaacttct cttagaaata aagaaaaact tagctgagag 3900 gtttgaaatg aaggatttgg aagaaatcca ctatattttg gatgtgcaga ttatgaagaa 3960 ccaaaagatt tgtaaaatct acctcaatta gcaaaaatat gtagaaaata tccttgaaag 4020 gtttggcatg aaagattgta aatctttggc tacacctttg gattctaata gtaaattgtc 4080 aagagacatg agtccacaga ttcctgagga ggttgaagca atgaaggaga ttccatacca 4140 aaatgcaatg ggcaatttag tctatgcaat gataggcact tgggccaata tttcatatct 4200 agtgggagtt gttagccaat acatggcaaa tcttggccca caacattgga tagcggtgaa 4260 atgcattttg caatatcttc aaggcacatc agatcatgtg ctacaatatg gtggaagctc 4320 tttgagtttg caagtggttg gttactatga tgcagactat gcaagagata ttgatacaca 4380 atgttcaacc actagttata cattcttgtt ggctagtggt gcaattagtt ggaatagcaa 4440 gaagcaacca acagtcgcat tatctaccac caaagcagag tatatggcag ctactcatgc 4500 tacaaaagag gcaatttggc ttcaaaggtt ttttaaagac attggatttt cacaagatgg 4560 tcctttgact attttcagtg ataatcaaag ttgcattttt ctttcaagga atcctacatt 4620 ctatgcttgt actaagcatg ttgaaattca acatcacttt gtttgtgaga agattgagag 4680 tggcaacatc aacttagttt tttgcgggac tcaagacatg gttgcagatg ttttgaccaa 4740 aggtctaact cgtgagaaac attgtaaatt caaggagatg atgggcatca tcaaattgag 4800 ttagtctaat atgtcattaa gtaggag 4827 // ID Gypsy-46_PIT-I repbase; DNA; PLN; 6172 BP. XX AC AATU01003494; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_PIT_; KW Gypsy-46_PIT-LTR; Gypsy-46_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6172 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003494; Positions 640 6811. XX CC Positions [4737-5216] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 718..4605 FT /product="Gypsy-46_PIT-I_1p" FT /translation="MDSTSQYDRLFTDEELDMLERGDDPVVESEPEEYDKE FT LEERLFPLDDEKILSRVKRNAEKQEKPSLAEMSVQLGISEEVLERTKEVSS FT GEMRTPEYWLDWYENTLKNSSEAKRANRDFKEVDGTKKPTLPVSSVTKSES FT EEVKSEEEDEEREFVQNVCVDLERTKVKAAEHSVGTPLPFRWRSEIRKWVY FT ELLKQEWNEEKNCPVKETGSMGRNDAKSEVPPFRDKSNRDILDVHYLRDYL FT ESIGGTMSRSLQHRTMDWGREYFWNETSSIRDRIRDREERASKIEGPIATA FT VALKRQKKVTFELPIESSEDERLKIAGELPDVYSINARRAPKPQRSPGLRA FT VSEGDAPQDEADVVPAGKRVICSVGGVKAVTGGYIDCCPSEMLADTGAIAS FT LVDQRVLVRLGRASEPLKPYSGSLDSVSGHAIRVRGVINLPVTLGTIEMTL FT PFVVVDHLFVDAILGTISLRSFRAVIDLEDQSMTLKGTGDVIPLGVTRVEE FT TYAATVTSTVQLKPGHLALVKSKVQGTMKDRSTVLVEGVPGTDENLRVART FT LCTVMNGTVLVEVCNASTEEVEIPSGAYVAAVTLVPKSAFGVNVQSGTTDE FT VSAVISATERNENTEEGTVEAEMAAAMQNDEDDDFKVDFHDSSLGAEQRRL FT FVEMLKDMKDLFVETSKKPGRTDLLKFSIDTGTSTPIKQPPYRVSKAEGDV FT MEAEIQEYLELGLIRPSNSPWASPVLMIRKPDGGIRFCIDYRKLNAVTIKD FT SYPMPLIDDILDVLGDAKLFSTMNIASGYWNVPMERDSIDKTAFTSKFGLY FT EWRVMPFGLCNAVPAFERLMENVLVDLKWRTCLVYLDDCVVFSDDFPTHLI FT RVRQVLERFREAGFKLKMKKCHWGRDQVAFLGHIVTPTGILPNPEKAKAVM FT NIERPHDLHTVRAFLGLTSYFRRYIPGFAAIAAPLERLKQKEVDFKWNDDC FT EVAFRQLKRALVKPPILVYPNFKKRFKLYVDSSHLAVGACLMQEVDKRDRA FT VAYASKMLVGSQRNWVNKTSGTTEIECWGIVWATRKFKCYLDHGEFDLFTD FT HQALTWIFSDSTRTSNAKLARWAAELSQLRFKVYHKPGTSMGHADGLSRLH FT HRPDKGIISAISMKDLLNEDRNDPPDKNGTILVEQTENWNETDGSVPVGET FT TDGVVSSGELTQEEQEEELQAGAPSTVPSAVDVFGLDYGKFMEEQERVPWM FT RAMKAFLKDGALALDPQLRVTVLKMSPHHLMKNEVLMRRVHLGVRAGPART FT VTVPVVPLPFIETVLHYCHADISRLIWERLKRWIR" FT CDS 4716..6086 FT /product="Gypsy-46_PIT-I_2p" FT /translation="MQRMPVQELSGPFSLLVVDAVGPLVVTPRGNKYILVF FT VDYFTRWAEAFAVASLDTISFVDAMIEGVICRHGVPERLLSDRGTNFTSDL FT ARSLYQTLGIKKLFGAAYHPQTQGLVERFNGTLLGMLKMFVNETQTDWDIY FT LPRVLLAYRTAYHEGLGDTPFFSLYGRDPVLPIDLAFLNTGKDWKSNEVAA FT YRRKLYLSLRDSRRLVERQLLKAQDRHEQRLGKQVKVTYEVGDPVWVYQYF FT RAKVGENKTKKLAFSWHGPYRIVGQVGENAYKIAIPRHPDKVVTVNVNRLK FT RFRGRWSRPFADDIPEGSTENVTTENVTDENVTTENVTDENVTTENVTGSD FT MRTEPGPLQEDDLPPSSFVERLSIGGEETAFAGVSSPIVDILAKKMEKGEL FT QYLVLTATYETFWLSRAALAPEFGTLITAFEDADRKKKGLPELRRSARLVE FT ANADVDDADVLF" XX SQ Sequence 6172 BP; 1589 A; 1281 C; 1853 G; 1449 T; 0 other; cgtccagaag tcgagaaact gcgtagcctc tcgaggagca ctgtcgtgac tgagacgtct 60 acctcgtctg gaacgtctac accaactgga acgtcccgac catgaagggg gcaggaggaa 120 ggggaaagaa gtgtcgctct ttcctcttgc caggttggcg acacaaaggg agatgaaggt 180 tcacgattaa gtggaactag tgaacctgag agggctcctg gggctggtgt gactagagga 240 gtaagcgctc gtgacgttcc cgttgcgagc gtgacgactg aaaatgcgga tattgggatt 300 ggaacgatca gtccaacgga acggactgat tcaaggcaag atgagaaggt agaggtttct 360 aaggagaaac ctgaaagtgg aactgtgtgc gcgggaggag caacggaaag ctccaccgta 420 acgctggatt gggaaagtgg aacgaaggat cgttccaatt ggttacagga cgtcgatcaa 480 gggacaacgg aacgttccga ggatgcgtcg aagaccaagg aggagtgcaa taggagaacg 540 gaggctgaag tgccgtccaa acgttctacg cggtatgaac aggcactcga atcggacacg 600 gaggacgcgg ttagcgtcag ggcaaattag tttgcagctg taatcggatt ggtgaacgca 660 acccaggaag aggcgggcgt tcccacagct gataatgatt cggaacgtac taaggagatg 720 gactctacaa gtcaatatga tcgtttgttt accgacgagg agctggatat gctcgaacgc 780 ggtgacgatc cggtagtgga gagtgaaccc gaggagtacg acaaggaatt ggaagagcga 840 ctgtttccct tggacgacga gaagattctg tcacgagtga aacggaacgc tgagaaacag 900 gagaagccgt cacttgcgga aatgagtgta cagctaggaa tatcggaaga agtgctggag 960 cgcacgaagg aagtctcttc aggagagatg aggacgcctg aatactggtt ggattggtac 1020 gagaatacgc tgaagaattc gtcggaggcg aagcgtgcca atagggactt caaggaagtc 1080 gatggaacga agaaaccgac tttgcctgta agttccgtga cgaaaagtga gagcgaagag 1140 gtgaagtcgg aggaagaaga tgaagagcgc gagttcgtgc agaacgtgtg cgtcgaccta 1200 gagagaacta aggttaaggc tgctgaacac tctgtgggaa cgccgctgcc atttaggtgg 1260 cgttccgaaa ttcgcaagtg ggtgtacgag cttctcaagc aggagtggaa cgaggagaag 1320 aattgtcccg tgaaagaaac tggttcgatg ggacgtaacg acgcgaagag tgaagttcct 1380 ccgtttcgtg acaagtctaa cagggacatc ttggacgtcc attatcttcg tgactacttg 1440 gaaagcattg ggggaacgat gagtcgctcg cttcaacatc ggacgatgga ttggggacga 1500 gaatatttct ggaacgaaac ctcatctata cgtgacagga tacgcgacag ggaggaaagg 1560 gcttctaaaa tagaaggacc catcgcaaca gccgttgctc taaaacgaca gaaaaaggtg 1620 acgtttgagc ttccaatcga atcgtcggaa gatgagaggc tgaaaatagc cggagaactg 1680 ccggacgtct attcgatcaa tgcgcgaaga gctccgaagc cacagagatc gcctggactg 1740 cgagctgtga gtgaaggtga cgctcctcaa gatgaagcgg atgtcgtgcc ggccgggaaa 1800 cgtgtcatct gcagtgttgg aggcgtgaag gctgtgaccg gtggctacat cgattgttgt 1860 ccgtcggaaa tgttagcgga tactggggcc attgcgagtc tcgtggatca gcgcgtgctg 1920 gtacgactcg gcagggcgtc ggaacctctc aaaccctata gcggaagctt ggatagtgtt 1980 tcggggcatg cgatccgcgt acgcggtgtg attaaccttc ctgtgacact tggaacgata 2040 gaaatgacgc ttccgttcgt agtggtcgac cacttgttcg tagatgccat tttgggaacg 2100 atctcgttac gctcgttccg tgccgttatc gatctcgagg atcaatcgat gactctgaag 2160 ggaactggag atgtaatccc gctgggcgtc acgagagtag aagagactta tgccgccacg 2220 gtgacctcga ctgtgcaatt gaagccgggt catttagctc tagtcaagtc taaagttcag 2280 ggaacgatga aagatcgttc cacagttttg gtcgaaggcg ttcctggaac ggacgagaac 2340 ttacgagttg ccagaacctt gtgtacggtg atgaatggaa ctgtcttagt ggaagtctgc 2400 aatgcgtcta ccgaagaagt tgaaatccca tcgggtgcgt atgtggctgc ggtgaccctc 2460 gttccaaaat cggcttttgg tgtaaatgtt caaagtggaa cgacggatga agttagtgcc 2520 gtgataagtg ctaccgaaag gaacgagaat actgaagaag gaaccgtcga agcagagatg 2580 gctgccgcta tgcagaacga tgaggacgat gatttcaaag tggacttcca tgattcgtca 2640 cttggagctg aacaaaggag acttttcgtg gaaatgttga aggatatgaa ggatttattc 2700 gtcgagacgt ccaagaaacc gggacgaacg gaccttctga agttcagcat cgatactgga 2760 acgagtacgc ccataaagca acctccgtat cgagtctcga aggctgaagg agatgtcatg 2820 gaggccgaga ttcaagaata cctggaactt ggcttgattc gaccgtcgaa tagcccatgg 2880 gctagtcccg tgctaatgat tcggaaaccg gacggcggaa tccgtttctg catcgattac 2940 cggaagttga atgctgtcac gataaaggat agctacccta tgcctttaat tgacgacatt 3000 ttggatgtcc ttggggacgc taagctattc tctactatga acatcgcgtc aggatattgg 3060 aacgttccaa tggaacgtga cagtatcgac aagactgctt tcacgagtaa atttggactc 3120 tacgaatggc gtgttatgcc ttttgggttg tgtaacgccg ttcctgcttt cgaacgtcta 3180 atggagaacg tgctggtcga tctgaagtgg aggacgtgcc ttgtttactt ggatgattgc 3240 gtggtgttta gtgatgactt tcctactcat ctaatccggg tgagacaggt tttggaacga 3300 ttccgtgagg ctgggtttaa gctgaagatg aagaagtgtc actggggacg tgaccaagta 3360 gcgttcttgg gtcacatcgt gacacctacc ggaatcttgc cgaacccgga aaaggcaaag 3420 gctgtgatga acatcgagag accccatgat cttcatacgg tccgtgcctt ccttggacta 3480 accagttact tcagacggta catacctggg ttcgctgcta ttgccgctcc tttggaacga 3540 ctgaagcaga aggaagttga cttcaaatgg aacgatgatt gtgaagtggc gttccgtcaa 3600 ctgaaacggg ccttggtgaa gcctccgata ctggtatatc ctaacttcaa gaaacggttt 3660 aagctctacg ttgattcgtc tcatttggcc gtgggtgctt gcctgatgca agaagttgac 3720 aaacgtgacc gagcggtggc ttacgctagc aagatgttgg taggttcaca gcggaactgg 3780 gtcaacaaga ctagtggaac gacggaaatc gaatgctggg gaattgtttg ggcaactcgg 3840 aagttcaagt gttatcttga tcacggtgaa ttcgacttgt ttacggatca tcaagccctc 3900 acgtggatct ttagtgacag cacgaggacg tccaatgcta aattggcacg atgggccgcg 3960 gaactatcgc agctgaggtt taaagtgtat cacaaacctg ggacgtcaat gggtcatgcg 4020 gatggactat cgagacttca tcatcgtcct gacaagggga ttattagtgc catttcgatg 4080 aaggatctct tgaacgagga tcggaacgat cctccggaca agaatggaac gatccttgtg 4140 gagcagaccg agaactggaa cgagacggac ggttcagttc cagtcgggga gacaacagac 4200 ggtgttgtct ctagtgggga actcacccag gaagagcagg aagaagaact gcaagcgggt 4260 gctccatcta cagtaccgtc tgctgtcgat gtctttgggt tggactatgg taagttcatg 4320 gaggaacagg aacgagtacc gtggatgcgt gctatgaagg cgttcctgaa agacggtgct 4380 cttgctctgg atccgcaact aagagtgaca gtcctgaaga tgtctccgca tcatttgatg 4440 aagaacgagg tcctcatgcg ccgtgtgcat ttgggggttc gtgccggtcc tgctcggacc 4500 gtgaccgttc cggtcgttcc attaccgttt atcgagaccg ttttgcacta ttgtcacgct 4560 gatatttctc ggctcatttg ggaaagacta aaacgttgga taaggtgaga cgccttgctt 4620 actggcacgg ttggcgaaag gacgtggttg aatacgtgaa ggagtgttct atttgcagtg 4680 gtggtaaagg tcgaaggcct tggcgggctg gtcttatgca aagaatgcct gtccaggaac 4740 tatcgggacc gttctcgttg ctagtagtgg acgctgttgg tccactggtt gtcacaccgc 4800 gtggaaataa gtatatcttg gtgtttgtgg actacttcac gagatgggct gaagctttcg 4860 cggttgcgtc actggacacg atctctttcg tcgatgctat gatcgagggt gtaatttgca 4920 gacatggcgt tccagaacga ttgcttagtg accgaggaac gaacttcacg tctgatttgg 4980 cacgatctct atatcagaca ctagggatca agaagttgtt tggagcggcc tatcatcctc 5040 aaactcaagg actagtggag cgatttaacg gaacattgtt ggggatgctt aagatgtttg 5100 tgaatgagac ccagaccgat tgggacattt atttgcctcg ggtcttgttg gcataccgga 5160 ctgcgtatca cgagggtctg ggagacactc ctttcttcag tttatatggt cgtgacccgg 5220 ttctacctat cgacttagcc tttctcaaca ctggaaaaga ctggaaaagc aacgaggttg 5280 ctgcgtacag gaggaagttg tacttgtcgt tacgtgactc aaggcgtcta gtggaacgac 5340 agctactaaa ggctcaagat cggcacgagc agcgtttggg taagcaagtc aaggtcacat 5400 atgaagtggg ggatcccgtt tgggtctatc agtatttcag agcgaaagtc ggtgaaaaca 5460 agacgaagaa gttggcgttc tcttggcacg gtccgtaccg tattgtcggc caagtcgggg 5520 agaacgccta caagattgcg atacccagac atcctgacaa ggttgttacg gtgaatgtga 5580 atcggttgaa gcgcttccgt ggtcgttgga gtcgaccgtt cgctgatgat attcctgaag 5640 gttcgaccga gaacgtgact accgagaacg tgactgatga gaacgtgact accgagaacg 5700 tgactgatga gaacgtgaca acagagaacg tgactggaag cgacatgcgt acggaaccag 5760 gaccattgca ggaggatgat ctacctccat cgagttttgt ggaacgtttg tctattggag 5820 gtgaagagac tgcttttgct ggtgtctcgt cgcctattgt ggatattctt gcgaagaaaa 5880 tggaaaaggg cgagcttcag tacctggtac tgacagctac ctacgagacg ttttggctgt 5940 cacgagctgc tctagctccg gagttcggaa cgttaatcac tgcctttgaa gatgcagatc 6000 gtaagaagaa gggtttgccg gagttacgtc ggagcgccag gttggtcgaa gccaacgctg 6060 acgtggacga cgcggatgtg ttgttctagc tggtcacttg accggttgga acgagtggag 6120 tgtgatgact tcactctaat cggtatttga gaacgagaga atctcaagat ac 6172 // ID Copia-3_PR-I repbase; DNA; PLN; 6017 BP. XX AC AAQX01000448; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PR_; KW Copia-3_PR-LTR; Copia-3_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6017 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000448; Positions 10101 4085. XX CC Positions [1956-2495] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 465..4481 FT /product="Copia-3_PR-I_1p" FT /translation="MKTIDNTHVRLVKNITTSYAIFQAICKKYEGAAFHGD FT PYFIQHFLMKIKYEESSDLTEFFLQLENAMKAASEATESVMTDGQKSLYLF FT HSMPKTWKDDLRVWKGQRKYIPYEELKLSIEAKVREIQAQERYTLAKGTPE FT TCTTKSEQALVAVPDHTALSAQTQTTDRICSYCDRPRHNIRQCRALQKDLR FT DGRVKAGTVLPENFGFKGGNPKRDHPYNNNSSGRGRGRNYQNRGRQDRSDN FT QQDRNNRQVRNTRQDSDKSKNRNRSFHQERREVGLIAVAATVTPSISLTAQ FT ATVSPEPTWTIDSGCTRHVTHEAQWFTTMNASSGAITVGGKHEIPIEGTGQ FT VEMEIIDSKGLKKTLTLRDVLYAPRLQFSLLSVPAAVKHDFRFSFDRKHCA FT IQTDERFKIKAMMANHADLYQFQAKPVVKNTALIAASGKQRSMLLLHKRLG FT HPNVRILHDLPRSQAISGLEDEAVDSRTQFFCTACTLAKSYRSPFYSNRTV FT ERARSPLDKVHTYICGPLPVPSLTGCRYFLIFIDDFSRYMFTYAIKNRSEV FT YECYENFRKRALNIFRSDVNVLEYPNPIEDCDIQVLQADNAKEYEKLGCTI FT FKKYGTHAPFTNAYTPQQNGVAERRMRTIMERVRALLLDGNLPKPLWAECV FT RHVTTLINMTPSSKTNGKTPYELWYNRKPSMEFLKVFGCSAYVHITEQYRD FT KLDARARLCMYLGLPDHKKGYRLMDVNTHAIVYSRDVVFKENEFPRLATLT FT DTPAKPSQTSTADMQTNHLAPRPAMPPTAVPPRLPPLREALKRTHYTFVSE FT TTSPPSTPTSKNTCIATDEPEITLGSEEGIQETEQRTTLLYTLLAIRYVSE FT PTTYRETMHSSHADQWHQTANSEYKSLMDNNTWVLVPRPCGRKILSNRWVF FT VVKYSGTGHIDRFKARLVIIGFLQEYGIDYNEIFSPVIRMEVLRLLLTIAA FT LLDFEIHQMDVKTAFLNGTLEEEIYMAQPEGFKVPGKEHLVCKLLRSLYGL FT KQAPHVWYLTLSAFLESLGFHKLIKDRCVFMRTTNGLTCYIAVYVDDLLII FT APTTALVRELKSALNQRFSMSDLGEVKYLLGWSIQRDRKNRTIFIHQHKYA FT TKVLDRFSKYISYPIATPSDRNVKLSESSQPSSEVKKDAMKEMPYREAVGS FT VMYLMVGTRPDMAFFMREVSQFLANPGMEHWKAVVRGLKYLAGTQDHGLIL FT GGASNITPENLADSFTAYSDSDYANCPDTRRSVGGYVTMLATSPISWLSRK FT HHTVVLSTTEAEYIALCHCMQEVIFLKLLLKELGFTTAQAMTIYEDNQSCI FT KICNNPELHGRSKHIDIRYHFVQEKVE" XX SQ Sequence 6017 BP; 1587 A; 1622 C; 1424 G; 1384 T; 0 other; taggtcatga gccctggcca agcctcaagc gacgaatttc cacgccttat cggagcagag 60 aacttcgacg tctggaaggc ccgcgtatcc gcagccctcg atgggaaaca tcttctcggt 120 tttgtcacca aggaggacta cgacggtgtc tctgacgacg agagcgagga cagcagcgtg 180 agcgacatgt ccgacgtcga cgacacgccc cagtccaagc ctgctgacga gatcgactcg 240 gatgccgtcg actacgagga gagcgatgaa gagctcaagc ctccgtctga ctccggctcc 300 gacaattccg gcgaaggcat caacacgacg atgaagcgga gcgatctgcc cgaaatccgt 360 cctttcagcc gccgtgacgc gaagcgcggg aggcgaagaa gaagaaacgc gtgctcagtt 420 cacgtgagcg acgcaggctg gaagcgaaga cgaaggcgtt cctgatgaag accatagaca 480 acacgcacgt ccgcctcgtc aagaatatca ccacgtctta cgccatcttt caagccattt 540 gcaagaagta tgagggtgct gccttccatg gagaccctta cttcatccag cacttcctca 600 tgaagatcaa gtacgaggag tcaagcgact tgacggagtt cttcctgcag ctggagaacg 660 cgatgaaagc cgcgtccgaa gccaccgaat cggtcatgac tgatggacag aagtctctat 720 acctgttcca ctcgatgccc aagacgtgga aggatgatct ccgcgtttgg aagggtcaac 780 gaaagtatat tccgtatgaa gagctcaagc tgagcattga ggccaaggtc cgcgagattc 840 aagcccaaga gcgctacacg ctggcaaaag gcacacctga gacgtgtact accaagagtg 900 agcaagccct ggttgccgtg cccgaccaca ctgcgttgag tgcccaaaca cagacgactg 960 atcgcatctg ttcctactgt gaccgtccac gccacaacat acgccagtgc cgcgccttgc 1020 agaaggacct tcgcgatggc cgagtaaaag cgggaacagt gctgcccgag aactttggct 1080 tcaagggtgg taacccgaag cgtgaccacc cgtacaataa caacagctcg ggtcgtggac 1140 gtgggcgcaa ctaccaaaac cgtgggcgcc aagatcggag cgacaaccag caggaccgca 1200 ataaccggca ggtccgcaac acccggcagg atagcgacaa gtccaagaac cgcaaccggt 1260 ctttccacca agagcgccgt gaagtgggcc tgattgctgt tgccgccacg gtcactccct 1320 caatcagcct gaccgcacaa gccaccgtga gccctgagcc tacgtggact atcgactctg 1380 gatgtacgcg tcatgtgacg catgaagccc agtggtttac aaccatgaat gcgagcagcg 1440 gcgcgatcac cgtcggtggg aagcacgaga tccctatcga aggaactggc caagtggaga 1500 tggagatcat tgactccaag ggtttgaaga agactctcac tctacgcgat gtcctctacg 1560 ctccacgact gcagtttagc ttactgtcag tcccagcagc tgtgaagcat gacttccgct 1620 tcagctttga ccgcaagcac tgcgccattc agactgatga acgcttcaag atcaaggcta 1680 tgatggcaaa ccatgctgat ctctaccagt tccaggccaa gcctgtggtg aagaacacgg 1740 ctctcattgc cgcctcaggt aagcaacgct ctatgctgct tctacacaaa agactcggtc 1800 atcctaacgt tcgcattctg catgatttac ctaggagcca agccataagt ggcctcgaag 1860 acgaagccgt ggattcacgc acccagttct tctgtactgc atgcacgtta gcgaagtcat 1920 accgctcacc gttttactct aatagaactg ttgaacgtgc tcgatctcct ttggacaaag 1980 tgcatacata tatttgtggt cctcttcctg tgcccagttt aactggatgc cgttactttc 2040 tcatctttat tgatgacttc tctcgctaca tgttcaccta tgcgatcaag aatcgtagtg 2100 aagtgtacga atgctacgag aacttcagga agagggctct gaacatcttt cggagcgatg 2160 tcaatgtcct tgagtacccg aatcctattg aagactgtga cattcaggtt ttgcaagccg 2220 acaatgccaa agagtatgag aaacttgggt gcacaatttt caaaaagtac ggaacccacg 2280 ctccgtttac gaacgcatac acccctcagc aaaacggtgt cgctgagcgg cgcatgagaa 2340 caatcatgga gcgtgttcgt gcccttctac ttgacggcaa tctaccaaag cctttgtggg 2400 ccgagtgcgt tcgccatgtg actactctga tcaacatgac acctagctca aagacgaatg 2460 gcaaaactcc gtacgagttg tggtacaacc gcaagccatc catggagttc cttaaggtat 2520 ttggatgcag cgcgtacgtg catatcacag aacaatatcg tgacaagctg gacgcacgag 2580 cacgtttgtg catgtacctt ggtcttccag accacaagaa aggctaccgt cttatggacg 2640 tcaataccca tgccattgta tatagccgtg atgtggtttt caaagagaac gaattccctc 2700 gcttagcaac actcacagac acgcctgcaa agccgtcgca aacgtcaacg gctgacatgc 2760 aaacgaatca ccttgcacca cgacctgcaa tgccacctac tgcggtgcca cctagactgc 2820 caccactgag ggaggctctc aaacggacgc attacacgtt tgtttcggag acgacatctc 2880 ctccgtcaac tcctacgtct aaaaacacct gtatcgctac tgacgaacca gaaattaccc 2940 tcggatccga ggaaggtatc caggagaccg agcagcgcac gacattactg tacacactac 3000 tagcgattcg gtatgtgtca gagcccacta cgtatcgaga gaccatgcat tcctctcacg 3060 ctgatcagtg gcatcaaaca gctaactcgg aatacaagtc ccttatggac aacaacactt 3120 gggtgttagt tccccgtccg tgcggccgga aaattttgtc gaaccgatgg gtatttgttg 3180 tcaagtattc cggcactggc cacattgacc gcttcaaagc gcgtctggtg attataggtt 3240 tccttcagga atacggcata gactacaatg agatattctc tcctgttatc aggatggaag 3300 tactgcgact ccttcttact atcgctgcgt tgctagactt tgagatccat caaatggacg 3360 tcaaaacggc tttcctcaac ggcacgctcg aagaagagat ctacatggct cagccagaag 3420 gattcaaagt acccggcaag gagcacctag tgtgtaaact acttcgaagt ctctacgggt 3480 tgaaacaagc tccccatgtc tggtacttga cactgtctgc cttcctagaa agtcttgggt 3540 ttcacaaact catcaaagac cgctgcgttt tcatgcgcac caccaatggc ctgacctgct 3600 acattgcagt gtatgttgac gatctgttga tcatcgcacc aacaactgcc ctcgtgcgtg 3660 agctaaaatc tgccctcaac cagaggtttt ccatgtcaga tttaggggag gtgaagtact 3720 tactcggatg gtccattcaa cgagaccgta aaaaccgaac gatattcatc caccaacaca 3780 agtatgcgac caaggtcctg gatcggttta gcaaatacat ttcgtaccct attgcgacac 3840 cttcagatcg gaatgttaaa ctctccgaaa gtagtcaacc aagcagtgag gttaagaaag 3900 atgcgatgaa agagatgccg tatcgcgaag ccgttggaag tgttatgtac ctgatggtcg 3960 gcactcgccc cgacatggca ttcttcatgc gtgaagtaag tcaattccta gctaatccag 4020 gaatggagca ctggaaagca gttgtcagag gactcaaata tcttgctgga acgcaagatc 4080 atggtctcat tcttggtgga gcttccaata taacacctga gaacctggca gatagcttta 4140 ctgcctatag tgactctgac tatgcgaact gtccagacac aagacgctcc gtcggtggat 4200 atgtgactat gctcgcaacc agtccaatct catggctttc acgcaagcac catactgtcg 4260 tgctctctac aaccgaggct gaatatatcg ccctgtgcca ctgcatgcag gaagtcatct 4320 tcctcaaact actccttaaa gagttaggct ttactacggc acaagccatg acaatatatg 4380 aggacaacca aagctgcatt aagatatgca acaatcccga actgcatggc agatcgaagc 4440 acatagatat ccgctatcat ttcgtgcagg agaaggttga gtgacatgaa ttcaccgtcg 4500 tatattgcaa caccaaagaa atggttgctg acatcttcac aaaagcttta gacaaacatc 4560 agttcagaga actaaggacg aagcttagga tgaaacccct tcaagcacac gttaatcatt 4620 ccgagtagca ttcgaagaca tacacaactg catgaagcat gtctaccaaa tgagtttcac 4680 tttatttttc ccaccgggtt tttattgttt gtggctcact aaaggttttt cctcattgag 4740 gtttccctga cgtcatgtct aatatcttag acataagcac atcaatccat gcataagcaa 4800 aagcaaagca gctcactata ttgacaggag ttataaacgg taaagcaaac ctgccgaaat 4860 ctttaccgtg ggcgtccacg cctactttcg aggcttgaac acgatgaagg aacgaataaa 4920 ggagatgaag tttatccaat cttcagccga agacactggc ttgccgtcat cgtcgttgta 4980 aatggtacgc ttgttgcctt caaccttcag cacgatgcag tggcccacga acgtgtgatt 5040 atacgccgcc accaagtaga gtccatcgca aaggtcgacc tcgttcagca cacgtgctac 5100 acggcgccca gcaatcgcga agttgtcctt ctcgatagcg cggtagataa agtcacgtcg 5160 atcatctcgc agctttcgta gaaagacctt gaacaccttc catgaagtgc cctgggtaag 5220 atccttgtga aacttgtcct tggtctctgc gatgaaatcc gcgatatctg cgtcggtcac 5280 gatgtccggt cgacctgcca gttctgcagc cttcttgaac gcctcgaaga cgcacgtacc 5340 agcagtgcta gctgcaagaa gccgttcgcc aaactcgtcg ccgtggcaga aagactccaa 5400 gtcttttaca ttagcagctg acttccatcg gtcaatcagt ccgacttcgt cgtcgaagcc 5460 atcctccaga aggacgttgc gaggctccca ggaacggatg tagcatttcc ggctctgctt 5520 gctctggttg agccaaaata tctggtattc ttgaccgcgc tctgtgtcac ggcggtcgac 5580 aattctcgcc acgtgccaag ttgccttagt ggtcaggtag tcaccatctc tggttgctct 5640 ggcgggccca taacggcctc cgtaaatctc gtagactgcg ttttcagtct cattctgagc 5700 tatttttttg gcccgcttat ttcttccacc acgacttttc ttagaagcag agacttttgc 5760 taaagttcta gccatttcta agtcgtcgtc aaaacttcca gctgggaaaa ccagaggcaa 5820 agattcgatc agctaacccg attagaaaca gactgagtgc tgcttagaaa tattgcttcc 5880 ttgccacgac tatatcggtg cctgaaccac acgtacagtc agcctgtttt tgaggcgact 5940 gctgagctct cagtatcata tcctgtcaaa ctaaatcgtc tgttagaaga gaaccctatc 6000 aaaagatgca gggaggc 6017 // ID Gypsy-12_PSo-I repbase; DNA; PLN; 11617 BP. XX AC AAQY01000241; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PSo_; KW Gypsy-12_PSo-LTR; Gypsy-12_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11617 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000241; Positions 377604 389220. XX CC Positions [7190-7669] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1116..2243 FT /product="Gypsy-12_PSo-I_5p" FT /translation="MWSPARSAYDMSSMVSNVMKVLPVFYSDTATMEKARD FT FWELFEAHTAHLPDQSRLLVFRQKLKGRPAERWRNIKIFATLKVRFHNQFL FT SRTADELWERLQTTKRDRGESVEEWGDRVSDLCDSLDYPNPQMRYQLFRRW FT LRSKRMLATLGSGPARAIPEACEWLLAKEMSRPIEEDDFLEDKKVAGSASS FT LATAMAAASETSTKLDKLAETMTTFMTQQQWQQQMMRNQWQPPRSPRNRMP FT NVSATTSSPGSGGNAPPGNGRPRGVRMGADSRTQEGAPVCGWCGYVGHSRE FT TCRRQVMICNQCGELGHIAVECEDGPNRGRTGGQASVARNGGRGPVKCGFC FT KEDGHSFAGCPEVAALRGLAVSLREAAQTSPPQ" FT CDS 2857..3885 FT /product="Gypsy-12_PSo-I_1p" FT /translation="MEEVPTPFADVPPPYALDGEGYDLSDCLFSAWTKGDD FT VLAETAAEDGAVPLETTTVSGNDRMFSDGELTAMENGDAGEEASILAGTDV FT VPEPEEYGKELEDRLYPLDEVELLKRVARNAEAQAEPSSEELARILGISLE FT VVERTRQASSDLHGSPEYWQGWFEDMLDKSEEAKRANRDFRSPVVSVVYGS FT PSGAVADPKEAPPAAGVARGLETVPPSDVASVSAEMQVAVESVVAENVVRP FT PGNPGGTLAVTKAVPILSEVRGVDPKVARTVARQAVFRILKETRNYGGRVS FT EVRRPPDGEEGTVEVPPLRDKVPEYDEERLLKHVDRAKELMSVTARFGERL FT " FT CDS join(4538..6325,6329..7714) FT /product="Gypsy-12_PSo-I_3p" FT /translation="MSTRFWEWSLGAFGAVIDVAERSLTLKSSGEVLPLGF FT TMVEESYMATMATSVRLPPRGQALVGARVVGDVTDKAFVLVEGSLGLPPTL FT CVARTLCTVEDGRVIVEVCNASTDEYWIRKGTVVASTSVIPESAFEPATAA FT LGGTVPAESDGSSGASAMSVSEKCEEGVGKKVKASKPDIPPDKSDGMKADF FT SESKLSFEQKELFQTELDGFRSMFVESSKKPGRTGLLQFEIDTGNSAPIKQ FT APYLVSLAEGEIMEAEIQQYLELNLIRPSNSPWASPVLMIRKPDGGIRFCI FT DYRKLNLVTAKDCYPMPLIDDILDVLGDAQLFSTIDITSGYWNVPMHPDSV FT SKTAFTCKYGLYEWLVMPFGLCNAVPAFERLMETVLVDLKWRICLVYLDDC FT VIFSKDFSTHLVRVRQVLTRFQQAGFKLKMKKCHWGRSQVAFLGHIVTPTG FT ILPNPEKVKAVLNVKRPVDVHCIRSFLGLTSYFRRYIPGYASISAPLERLK FT VKGAPIEWSDDCEGAFRQLKRALMKPPILVYPDGKKGFKLYVDSSRYAIGA FT CLMQEVGGRNRVVANASKLLTGSQKNWITKQDGISEIECWGVVWATRKFCY FT LDKREFDLYTDHQALTWVFSPGNRTTNAKLARWAMELSNLQFKVHHKPGTS FT MGHVDGLSRLPMDPVAALSMSDLLNPEGTVEDVLPTSVGEQAGANDGPGIG FT GERADGHVDDECPDLPNEAVSDTPAGGAPLTPVDRFGLDLDQFIQAQQEMP FT WVKALVAFLLDGALPLDPFLRSTVVRMRSRYVVRNGLLMRKVHLPARVGPA FT RSLTVPVVPVPYVETVLHYCHADVLSSHLGLTKTLEKVRRHAFWPGWRKDV FT TEYVRECTRCGSGKGSRPWQAGQMQRMPVADLSGPFSMLVVDAVGPLPVTE FT RGNKYILVFVDYFTRWAEAFAVLRLDSVTFVEVMVNGVVARHGVPSRLLSD FT NGRNFTSEIAKSFYQTQGIRKLYGSAYHPQTQGLVERFNGTLVGMLKMHVS FT EAQTDWDLHLPRVLFAYRTSYHEALGDSPFFSLYGRDPVLPLDVALLNLGK FT K" XX SQ Sequence 11617 BP; 2219 A; 2958 C; 4051 G; 2389 T; 0 other; cgtggtggag aagcagggta ctggcttcgc tgtgaagtgg gcatcggata gtctggtcga 60 gtcgagcgtc gggattcgtt ggcctttgcg aggtgacagc agcgcgttgg aatcgcgatc 120 gagagctcgt ccctggggtc ttcaagaagt ctcggtatcg gcgcaagact tgtggaacgg 180 tcttgtctgg aagtgaagtg aagaacggca cgctcggtgc ctctggaatt ggtctagggc 240 acgctcggtg cctctgaaat tggtctacgg cacgctcggt gcccctgaag ttggtctacg 300 actcgctcgg agcccctgaa gtttgaagtt tggggtttac agtttggaga agatgtctgg 360 agctggagaa ggtgaggggt cctcggagca gcggaccgtg caagaagaaa tggcgcgcct 420 ggaggctgaa cggcttcgca aggcgaggga gactggtggg acgtcagcga cgccgacgtc 480 gcccggtgac gggagcggga cgagcacgac ggccaaggtg acgagcgcga ccggtcgtaa 540 gtccctgcgc caagagatga tgggagatct ctggactgat gaagaagaag atgagttcaa 600 ggacgctgat gaggagcgtg aaggagacgg tgctcccgcg gagctagagc tcgaggagaa 660 ggaggcggtg cccggccccg gggagctacg gggcgctgac gccgaagagt cgaggggcgc 720 gttctcgagg cccgtgcact actggtcgag tggtttcggc tacgacggcc ctgtgccgat 780 cgagacggcg cattcgcggc cgttctacag gtcctacgtg aaggaagaac ctgaggaagt 840 gccctctcgt agcccgagcg ggttcattcc ggtgtacacc gggacggaga ggcggttgcc 900 gaacccgccc atgtacggtt ggcgtgttgg ggcgcagcct ggcgcctacg gtgggtgggg 960 cacggtcgta aagactgagc cgaaagtcaa gcagctagtc aaggtggagc cgagcaagac 1020 ggtaactcgt gccaagactc cgaccccagg cgcggcgcct gctgccaaaa ctgtcgaccc 1080 ctacgaacct cggtggacca aaccgcgcat cgactatgtg gtccccggct cgcagcgcgt 1140 acgacatgtc gtcaatggtg tccaacgtga tgaaggtgtt accggtgttc tactcggaca 1200 cggcgacgat ggagaaggct cgtgacttct gggagctgtt cgaagctcac acggcccacc 1260 tgcctgatca gtcacggttg ctggtgtttc gccagaagct caaagggagg cctgcggagc 1320 ggtggaggaa cattaagatt ttcgctacgc taaaagtacg gttccacaac caattcctga 1380 gcagaacggc tgatgagctt tgggaacggc tacagactac gaagcgtgat cgcggtgagt 1440 ccgtggagga gtggggcgat cgcgtctccg acctctgcga ctcgctggac tatccgaacc 1500 cgcagatgag gtaccagttg ttccgacgct ggctacgcag caagcgtatg ctcgccacgc 1560 tcggctcggg accggcacga gccattcccg aggcttgtga gtggctgctg gccaaggaaa 1620 tgtcccgtcc cattgaagaa gacgacttcc tcgaagacaa gaaggtggcg ggctcggcct 1680 cgagcctggc gacggcgatg gcggccgctt ccgagacctc gacgaagctg gacaagctcg 1740 cggagacgat gaccaccttc atgacccagc agcagtggca gcagcagatg atgcggaacc 1800 agtggcagcc gccgcgctcg ccaaggaatc gcatgccaaa tgtgtcggcc acgacttcga 1860 gtccaggctc gggcgggaac gctccacctg ggaacggtcg accgcgaggg gttcgtatgg 1920 gtgctgattc acggacgcaa gaaggagcgc ccgtgtgcgg atggtgtggc tacgtgggcc 1980 attcacgcga gacttgtcga cgacaagtga tgatatgcaa ccagtgtgga gaacttggac 2040 acatcgccgt ggaatgcgag gacggaccca atcgcggccg gaccggtggt caggcttccg 2100 tggccaggaa cggtggccga gggccagtga agtgcgggtt ttgcaaggag gacggtcact 2160 cgttcgctgg gtgccccgaa gtggcggcgc tccgaggtct ggccgtgagt ctgcgagaag 2220 ctgcgcagac gtctccgcct caatgacgag ggtgggagga aggggaggag agagtaactc 2280 cttcctcttg tctattggat gactcggagg gtgaggatcg tgaccgtgac gaagtggagg 2340 agacggtctc gagggtggat gtatgcatga gtgtattgtc agagccagac ggaatggtat 2400 cagccctgga tgaagtttcg tatggagaaa acaaggccaa aacgagaaaa agaaagctga 2460 atttattgtg gttagtacgg atgatgaagg agaggatctc gcggtgaagt tcggccactt 2520 agaatacgac acgatctacg aggacttggc catcttggcg gccgccgctg actgaaggtc 2580 ggccacttag aatacgacac gatctacgag gacttggcca tcttggcggc cgccgccgac 2640 accaccgtcg cggtgggcgg gtcggtcgca ttggcggccg acgtgaagac cggtggagta 2700 gaggaggccg agccgaccga gttgaaggcc gagacgaccg aggggaacac gcccgagtta 2760 ccgaacgaga agaaggaccc ggacgagttg ccggaggtgc cgtcgccggt cgcggacgcg 2820 ccgccgccgt atgggtcggg actcgaggag gaggatatgg aggaggtgcc gacgccgttc 2880 gccgacgtgc cgccgccgta tgccctagat ggcgaaggat acgacttgtc ggactgcttg 2940 ttctcggcct ggacgaaggg agacgacgta cttgcagaaa ccgctgctga ggacggtgcg 3000 gtcccgctgg agacgacaac cgtctctggt aatgaccgta tgttctcgga cggtgagctc 3060 acggcgatgg agaacggtga cgcgggcgag gaggcttcca tccttgccgg tacggacgtc 3120 gtccccgagc ccgaagagta tggcaaggag ctcgaggacc gactgtaccc gctggacgag 3180 gtggagctcc tgaagcgtgt cgctcggaat gcggaggctc aagccgagcc gtcgtcggaa 3240 gagttggctc gcatcctcgg gatctcgctg gaggtggtgg aacggacgcg tcaggcgtcc 3300 tctgacttgc acggttcgcc cgagtactgg cagggctggt tcgaggacat gctcgacaag 3360 tccgaggagg ccaagcgtgc gaaccgcgac ttccggagcc ccgtggttag cgtggtctac 3420 ggctctccgt cgggagccgt cgccgacccg aaggaggcgc ctccggctgc cggcgtcgcg 3480 agaggtttgg agaccgtgcc gcctagtgac gtcgcgagcg tctcggcgga aatgcaggtg 3540 gctgtcgagt ctgtcgtggc cgagaacgtt gtgcgtccgc cagggaatcc tggtgggacc 3600 cttgcggtga ccaaagcggt gcctatcttg agtgaagtgc gaggcgtgga cccgaaggtc 3660 gcgcgtacgg tggcaaggca agctgtgttc cgtatcctga aggagactag gaactatgga 3720 ggccgggtga gtgaggtgcg gaggcctccc gacggtgaag aggggacggt ggaagtccct 3780 ccgctgcgtg acaaggttcc tgagtacgat gaagaacgac tcctgaagca cgtcgaccgt 3840 gccaaggagt taatgagcgt gacggctcga tttggcgagc gcttatgatc ttggatgagg 3900 acctactacg acgacaactc tcgaaggatt tggttggagc tgtggacccg tacggggtgg 3960 tctaagacgc cgagtgctag acgtcgccgc cgccgtcgcc ctgacaaggc ggtcacgttt 4020 gatttttcgt cgctttacaa gccgtatgcc gatgtgatcg acgacttgga gcttttacct 4080 gagcgtgatg aggacgcttc gcactacgtc gaggtggtga ggtgcgaacg tcccgctcgg 4140 acgccactgc cgaagactgg cctggtggac gttgtcacgg tgaacctacg gaatggtttc 4200 ggagtctatg atgatgagga cgctgaagac tgtgtacacc gtgtcgtgga agacgtacga 4260 agggtggtgt gcgcggttgg caactttgag gcgctttcaa gtggttatat tgactgttta 4320 ccgtctcaaa tgctgaacga caccggcgct accctaagtc tcgttgaccg ttgcgtgctg 4380 aagcgactgg ggcggtcctc tgagcctctg tacccttacg aagggctggt caggagctcg 4440 tcgggacaca agcttcggat ccgtggctgg atcagcttgt cgttccggct tgggtcggtg 4500 gagatttcgc tgagcgtgtt ggtggccgac aagctgcatg tcgacgcgat tctgggagtg 4560 gagtttgggc gcgttcggcg ccgtgattga cgtggcggag cgctccctga cactgaagag 4620 ctccggcgag gtgctgcctc tgggctttac gatggtagaa gagtcctaca tggcgacgat 4680 ggcgacgtcg gtgcggctcc ctccccgagg acaagctctt gtgggggctc gagtggtggg 4740 ggacgtgacc gataaggcct ttgtgctggt cgaaggctcg ttgggcctgc cgcctacgct 4800 gtgcgtggcg cgaacgctgt gtacagtgga ggacggccga gtgatcgtcg aggtgtgcaa 4860 tgcatccacg gacgaatact ggattcgaaa ggggacagtc gttgcgagca cgtccgtgat 4920 ccccgagtct gctttcgagc cggcaacggc ggcgcttggt ggaacggtgc ccgctgaaag 4980 cgatgggtcg agcggggcga gtgcgatgtc cgtgtcggaa aagtgtgagg aaggtgtcgg 5040 caagaaggtg aaggcctcaa agcccgacat tccgcccgac aagtcggacg gcatgaaggc 5100 cgacttctcc gagtccaagt tgtccttcga gcagaaggag ctcttccaga ctgagctgga 5160 cggcttccgc tcgatgttcg tggagtcctc gaagaagccg ggacgtacgg gcctgctaca 5220 gtttgagatt gacaccggaa acagtgcgcc gatcaagcag gcaccgtacc tcgtctcgtt 5280 ggctgaaggg gagattatgg aggcagaaat ccaacagtac ctggagttga atttgatccg 5340 tccatcgaac agtccatggg cgagcccggt cctgatgatt cggaagccgg acggtgggat 5400 acggttctgc atcgattacc gtaagttaaa tttggtcacg gcgaaggact gctatcccat 5460 gccgctaatt gatgatatct tggatgtgct gggggacgct cagctgttct cgacgatcga 5520 catcacctcg ggctactgga acgtgcccat gcacccggac agcgtgtcca aaacggcgtt 5580 cacatgcaag tacggtctgt acgagtggct agtgatgcca tttggactct gtaatgctgt 5640 cccagcgttc gagcggttga tggagaccgt gctagtggat ctaaagtggc gtatctgcct 5700 ggtctatctc gacgactgcg tgattttcag caaggacttc tctacgcatc tggtgcgtgt 5760 tcgtcaagtg ctgactcgct tccagcaagc gggcttcaag ctcaagatga aaaagtgcca 5820 ttggggaaga agtcaagttg cctttttggg tcatattgtc acgcctacgg gtatccttcc 5880 caatcccgag aaggtaaaag cggtcctgaa cgtgaagagg cctgtggacg tgcactgcat 5940 acggtcgttc cttgggttga ccagctactt ccgtcgctac attccggggt atgcttccat 6000 ttcagcgccc ctggaacgct tgaaggtcaa gggcgctccg atcgagtgga gcgatgactg 6060 tgaaggtgct tttcgtcaac tgaagagggc cctcatgaag cctcctatcc tagtctatcc 6120 ggacggtaag aaggggttta agttgtacgt tgactcgtca cggtacgcga ttggagcgtg 6180 cctcatgcag gaagtgggcg gtcgtaaccg tgtggtggcg aatgcgagca agttgttgac 6240 cgggtctcag aagaactgga tcacaaagca ggacggcatc tccgagatcg agtgttgggg 6300 ggtcgtctgg gcgaccagga agttctgatg ttatctcgac aagcgtgagt tcgacttata 6360 cacggatcac caggcgctga cgtgggtgtt tagtcctggc aaccgtacta cgaacgctaa 6420 gctggctcgg tgggcgatgg aactctctaa tttgcagttt aaggtgcatc acaagcctgg 6480 tacctctatg gggcacgtgg acggtctatc tagactacct atggacccgg tggcggctct 6540 ctcgatgagt gacttgctga acccggaagg cacggtcgag gacgtgcttc cgacttcagt 6600 cggggagcaa gcgggggcca acgacggtcc tggtataggt ggcgagcgtg ccgatggtca 6660 tgttgacgac gagtgtcctg acctgcctaa tgaagccgtg agtgacactc ccgctggagg 6720 tgccccccta actcctgtcg accggttcgg tctggactta gaccagttca tacaagcgca 6780 gcaagagatg ccgtgggtga aggcgctggt ggcgtttctg ctggacgggg ccctaccctt 6840 ggatccgttc ctccggtcga cggttgtgag gatgcggtct cgatacgtgg ttcggaacgg 6900 gttactgatg aggaaggtgc acttaccggc tcgggtcgga cctgcccggt ccctgaccgt 6960 cccggtagtg cctgtgccgt acgtggaaac cgttctacac tactgtcacg ctgacgtact 7020 atcctcgcac ttgggtctaa caaagacgct cgagaaagtg aggaggcacg ctttctggcc 7080 tggctggagg aaggacgtca cggagtatgt ccgcgagtgt acacggtgtg gcagtgggaa 7140 ggggtcgaga ccgtggcagg ccggccagat gcagcgaatg ccggtggcgg atctctcggg 7200 tcctttctcg atgctggtgg tggacgctgt gggaccgtta cccgtgacgg agagagggaa 7260 caagtatatc cttgtatttg tcgactactt tacgaggtgg gccgaggcct ttgctgtgct 7320 tcgcctggat tcggtgacct tcgtggaagt aatggtgaat ggagtggtgg cgcggcacgg 7380 tgtgccgtcg cggttgctga gtgacaatgg acgaaacttt acgtcggaga ttgcgaagtc 7440 cttctaccag acgcagggga ttaggaagtt gtacggttca gcgtaccatc cccagactca 7500 agggctggtt gagcgcttta atgggacgct cgtgggcatg ctgaaaatgc acgtgagtga 7560 ggctcagacg gattgggatc tacatttgcc gagggtgtta ttcgcctaca ggacatccta 7620 ccatgaagcg ttgggcgact cgcccttctt ttctctctac ggacgcgatc ccgtgttgcc 7680 gctggacgtc gcgttactga acctgggcaa gaaatgaaag agcaatgaaa tggcagcgta 7740 ccgtcgcgag ctctaccgta ccttgcgtga ctcgcgtcat ctggtcgaga ggcagctcct 7800 gaaggcgcag gatcgacatg agcagcgact gggcgatcgc gtggttgtgc agtacgaaat 7860 cggtgatcct gtttgggtct atcaactctt caggaacaag aggggcgagg cgaggacgaa 7920 gaagttggcc tttgcctggc atgccccgta ccgtgtcgtt ggtcgagtgg gcgagaacgc 7980 ctatcggatc gacataccat cgcacccaga caagatcgtc acggtgaacg tcaaccggtt 8040 gaaaaagttc cgtgaccggt ggactcggac ctacatggac gaagtgccgg aaggtattgt 8100 gggggacggg gaagaagttg aagacggtcc gctggaggaa gcagatttgc cggcatccag 8160 tttcacggaa cgggtgacca taggtcgcgg ggatacggcc ctcacggggg ttacttcgct 8220 gctgctggag attgttgcga aacaagtggt cgaccgtgct gtgaagtacc tggtgcttac 8280 ggctaatttt gagagtcact ggattcctcg ggctgagtta atgcccgagt acagcgactt 8340 agtgacggct tttgagcaag ccgaacggaa gaagcagcgc ctgcctgagc tacggaggag 8400 ttcccgtttg gaagaggcta acgctgaagt ggaggacgaa gacctggtca tggcttagca 8460 gtgccgaaaa gggtgttgtt cgtgatccaa gggacggtcg tgtacggtga tggtacggtc 8520 acttggaact caagaacgga tcggtggaaa gggaattacg tgttttgaat ttgaattgat 8580 taattggagg aacgctagca gatttggaga aagcaaaatg aacgactagt gtcacgtccc 8640 taatgacggc tgcgactcac ttggacttgg gagaagccgg aggagcggca ctcttcttgg 8700 acgaggtgtc atcgccctcg tcaccggcgc tgctcttctt gtcgtcgtcc gtggggtcgt 8760 tggcgcccga aatgcggtct tcgtcggcct cgtggtcgtc ctgctcttcg tcgtcatcct 8820 gatcttggtc ggcctcggtc tcgggcagat gctcgtccaa ttcgtcgggc tcgccgtcgt 8880 cttcctcctc gagatctggc gtcggaggca gcaccgtgaa catgtcttcg tcgtcctcga 8940 agtccgagta gtcgtcgcgc tgctccttgt cctcgtcgta cgccttctgg gcagggaaca 9000 gttgcttgcc cttcttcacg agcggcttga tcttcttggc gagggctcgg atgcgagcgt 9060 cccccagcag aaccttccag gtgccggcgc tcttgttgcc gacccacgac gggttgggcg 9120 ggctgccgcc ggtgacgtcg atgacgacgc gggtgggggc ttcgtcgctg aggcgaaggt 9180 gcgctggctt ggtcgggttc agcgcgtccg tctgctcgag gaggtcggag atggactggt 9240 atccgtcctc gtccacacgg tacggatcaa gggcacgggc gatgatggcg tcgtagcggc 9300 cacggtcgtt gcggaacagc gtggcgaggt ccgtcgccgc cgtcgcatac gacttaccct 9360 tcgagttcgc cttcgcggcc accgagcgcc gagcagcctt gccgcctagc cacatgaggt 9420 tgtcatgggt ggcattctcg aagagtccag gtggtcgtag aagctgagct cgacgatgtt 9480 caggctgatg aaggcgagcc gtgcctggcc ggcgttcgac ttcttcttgc ggcgggccgt 9540 gcactcgtca gagggcgcgt acagcgcgca ggcgaagaag acgtcgcgcc agtgcatcca 9600 gaagcgccag tacgccacgt gtagcgcagg gtgctcctga gggtcatacc aggcacgctg 9660 accggtccac gggtacgcca tgcgcggagg agtcttgccc tgggtgcccg cctgcttgat 9720 gaccttggag atgtcgcgac ggatggtggc tggacacttg gcgggtagcg ggaattcgta 9780 ctcctccgcg ccgtctccct cgggggcatc ctcctcgtcg tcggcgtcgt cttcgtctca 9840 gtcctggaac ctggacttgc gctgcttctt ggacggaggg ggcttgaagg cgctcctagt 9900 ggtcggtcgc ttgccagacg agcgtgcctg cggcgcgggt cggtgaacag gtcatgcggg 9960 ggcgcagcga cgacgtgcag cgagtcgggc agcggcagca gggtcacagt ctctagtagc 10020 tcgacgggaa agagcgtgtc gtcggccaag acggcgacgg cgacggcgtc cacggcgtcc 10080 atgttcgtgg agccgctgtt ggcgaagagc gcagcgcgca ggcggacgta gaagcccact 10140 tgggcacgga gctgggcatc ggcttcagcg tccgcgcccc gggaccggcg atcgaggcgt 10200 gcgcgcagcc gtcgcaggac ggcctccctg ttgacgtctc gcgacttggt catggcggaa 10260 ggtggtggct ggggcttctt gggagtcttg ttctcttctc ggcgaaagct gaaatgaggg 10320 cgagactgcg agttgccgcg gcctctgctg atgcgttccg acctggcagt tgggacgttt 10380 ggctgcggat ttcccttcct ggaaatggga gaggcacggt tggcgtgaga cggtcgagtg 10440 attgactaag ttgattgacg agacttgcga cggtgggtta cccgttacgg ttggacactt 10500 acgagtatgg ctgcgaactt ggaatgctgt ggacggccgt gaggagcata ctgaggcgag 10560 ggcatttcgc tttcgtctcc gtggcgaaca tggaaaccgt gacggatgtt gtcgagtggt 10620 gcctgtggca ctccctgttc gtgtggaaga ttgtgtggcg ggtgctgcgc aaccactggc 10680 cggccgtatt gctggcgatg attggtgcag tgggcggcgt gatcacgagg cccttgtgga 10740 gcattgcggg gcgattgatc ggggtcgtgt tcggctttgt gctcaagtgg ctgacactgt 10800 tgaaggtatg cgtaagacgg taccgtcgct tcgtgaacgg tccgtccgtg cgaggcagac 10860 cgtctgcgga gcgtcgatga aaggcgtttg aggcgatctg ggccacgccc atggtggtgc 10920 tcgaggcccg aggtgaacat aaggatggct taggccggtt actgtacaag tggctggatg 10980 cttaccacgc tctgtggtgt gtgttcctgc ccgacgtgct cgagctgggt ggcgagtcta 11040 ccgtgaagta ctggcgcgga tcgagggccg agtgtcggcg ctcggttgac cgtgcctgct 11100 gtgtgggccg tggattgtgg gcgttcctaa cactagcgac gtatgccgtg ttctacactg 11160 tcatctacgt gtataacttg gccgagaaag cgtgccaagg aacggtgggt gtgggcgtgc 11220 tactcctgac cctgaactac atgttggcgg acggtgagct gactgccgac ggtgggttga 11280 gccctgatgc agtcgtgatg cagtggagct gcgtggtggc ggcgactggg gtcgccagcc 11340 acttgctgaa gtgctacgag gcggcgtcag gagtgcgttc acctgcgaag atggcggagg 11400 agagctacgc cgactggctc cgtgacgtcg aggaattgca gcaagccgaa cgcctgagtg 11460 aagcattctg gcgtgcggac gggtgcgtcg ggaaaccgaa gccggtgcgt accctgagtg 11520 ggctacgggc ggagcagcgc gccctgcgcg cgaagatgaa ggcggccaag gaggaagagg 11580 gcgctcgacg aggacgtcga gtctcagtcg gggagga 11617 // ID Gypsy-6_PSo-LTR repbase; DNA; PLN; 229 BP. XX AC AAQY01000363; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PSo_; KW Gypsy-6_PSo-I; Gypsy-6_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-229 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000363; Positions 59568 59796. XX SQ Sequence 229 BP; 59 A; 65 C; 63 G; 42 T; 0 other; tgtagtgggg ggttacgact agcaagcctc ttcccactca ccgggcatcg cacccagcgc 60 gatgctgagc tggcaaaacg acagaggagt taggaaacca ctgccggccg acggatcgtg 120 ccgagcagtg aggcagagta cattttacct acttgaactc aatagactga ggaacttacc 180 aggaagcgcc ggcttccctc gcagaagagt ttcgctcaga cctactaca 229 // ID Gypsy-6_PR-I repbase; DNA; PLN; 4761 BP. XX AC AAQX01000699; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PR_; KW Gypsy-6_PR-LTR; Gypsy-6_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4761 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000699; Positions 10683 5923. XX CC Positions [3390-3905] - Integrase core CC 'GGAGG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 966..3929 FT /product="Gypsy-6_PR-I_2p" FT /translation="MNRRRDAEASKMKRVLGDGEDLAPMHVAFNEVVTMPY FT FPDNGTKYNVIPRRIVEELQQAYPDVKVERLQKPIDGKAVGGAIISCDESI FT QLDMELITPAGKVRMRKVTCIITETEEHEFLLGRLTLKALGIDVEGQLSAL FT ANKEIVDFDSSESETPMSFDPPDKKKIIAQLCELINEAVANGFPAERKREL FT FEVVMRYDIWRIAIGNDPPSKIEPFVIQFKKGTLTIRCRPRTYAPAEREWM FT KAFNESLMKLGWVYRNEASRWASPARPVKKPGKTGGLRQAVDFRRPNKQVL FT PVAGSMPSLSTRLHHTKNKKHRQTVDFLKRFWQMALAKVSQESQSYMTEDG FT VFTPTRLQQGSVDSSIHFQQSIEKIMREANLLYEHVLAWIDDLLIYADTID FT EFLSVLDRVYCTLEKNGLFLGLNKICLYTTEAKWCGRIIKEDGIAYDHERI FT QTLIDLPEPKTAAQLQQFLCAVGWMRNALVDFARVAAPLQARLQTALEGTK FT RTKHVAARVAIDFTAEERKRFGQVKQLLAKSATLVTPDDSDELILMTDASD FT AGWSIIATAVENWDPATSITEQQHQLVHCMSGTFKGAAQHWSVSEKEAFPI FT IKAATDLDYLLIRSKGFRLYSDHRNLIFIFAPGDEIKKHVRGKLQRWSLKL FT NELRYTIEHISGEDNVWADMASRWACIELPRETTTVKRWQTQDTHVQVELR FT PLRPDSEWPTENDIKCAQLATTCTRPPHLEEQPNGLWSDEQNRLWIPEDAE FT VFLMKLMVIAHCGTMGHRVVKVMINHLQEHFHLEKLEPQARVFCSRCLLCC FT HVKGGKIIPRPWGETYRSNERNEALHMDYLFIGDYNGESNYLLVMKDDFSH FT YCELIECSSANAATAAMAILDWNSRYGMPQLLISDTATHFKNQLLEELCHK FT TQMTQSVTLAYCPWINGSVERLNRDILQVLRVMLLEYKVEQDNWAALLPLI FT QANLNHSPVASLANHAPAEVFLGVRQRLHYRKS" XX SQ Sequence 4761 BP; 1265 A; 1123 C; 1320 G; 1053 T; 0 other; aagttaactt tagctgtgga caacgatcca acacgggcca tgagcggccc ccagcagaag 60 cgaagtcggg cgaacaccgc aggagatgac ggtgatacgt cgcagccgac gaccaagcta 120 tggacagcgt tggagccacc tccgattgtc tgtttctcgc acgaagctct caagtggcgg 180 cggaagcgga agctatacga ggcggcagtg attgcgcgct gccaggagtc gggtgagtcg 240 ctggccactg tgatgaagcc ggtgatctcc accatccacc gccgcttgct caagacattt 300 tgtgaattgg agctaaagat gtcagtgagc gagatgacga acgacaggct ggtcacagcg 360 attaatcaga tcttggcgag aatgatgaat gaccagatcc caaatgttca tgcgatcatg 420 aaccagcacc taaggatgga tcttcgccag aaggatgtga aggccagggt tttgaactat 480 ttcgacaagt ttgatgaact cattgaagaa tatggtttga gtgtggtaat gaaaagctga 540 aatgccgttt gttgactgaa aatctgcgtc cctctggctt gaaggagcag gttttgctgt 600 accaagacct cgatccgacg gtgaagatca gtgtaccgcg cttgtttgat gtgatcaagg 660 cggaggcact caagaatcaa caatcctttg atctctttca ctcgactagg gacagaggtt 720 cagctaggac tacgaaaacc gctccataca acaacaatgg agatcgcaac atctataaat 780 cgcagaaagg agatcagctg cagccagctc gcgaagatcg acgggacgaa cgaccgatgt 840 ttaagaagcg cgatgctgca cctgctcaag gctgtctgca ctgcaagggc actcattggg 900 ttagtgactg tccttcggct actgatgagc aaaagaaggc tgcttgagaa gcatttaagg 960 agcgcatgaa tcgacgcagg gacgctgaag cgtcgaaaat gaagcgagtg ttgggcgatg 1020 gtgaagacct cgcaccgatg cacgttgcgt tcaatgaggt ggtgacaatg ccctacttcc 1080 cggacaatgg cacgaagtac aatgtgattc ctcgtcgaat tgtggaggaa ttacagcaag 1140 cctatccgga tgtgaaagtt gagcgcctac agaagccgat tgatggcaaa gctgtgggag 1200 gcgcaattat tagctgtgat gaatcaattc agctggatat ggagttgatc acgcctgcag 1260 gaaaggttcg aatgcgcaag gtgacctgta tcatcacgga gacggaagaa catgagttct 1320 tattgggccg gctcacacta aaggcactag gaattgatgt tgaaggtcag ctttctgcac 1380 ttgcgaataa ggagattgtc gattttgatt cgtccgagtc ggagactcca atgagtttcg 1440 atcctccaga caagaagaag attattgcac aactctgtga gctaatcaac gaagctgttg 1500 caaatggttt ccctgcagag cgtaaaagag aactgttcga agttgtcatg cggtacgata 1560 tctggcgcat cgcaattgga aatgacccac cttcgaagat tgagccgttc gtcattcagt 1620 tcaaaaaggg aactctgaca atacggtgca ggccacgcac ctacgcaccc gcggagcgcg 1680 agtggatgaa ggcgttcaat gaatcgctga tgaagcttgg gtgggtgtat cggaatgaag 1740 ctagtcgatg ggctagtcct gctcgacctg tgaagaagcc aggaaaaaca ggaggacttc 1800 gtcaagctgt ggactttcgt cgtcccaata agcaggtgct acctgttgct ggatccatgc 1860 ccagtctcag tacacgactt caccacacga agaacaaaaa gcaccggcaa actgttgact 1920 tcctgaaaag attttggcaa atggctctcg ctaaagtaag tcaagagtca cagtcctaca 1980 tgacagaaga tggtgttttc acgcctacgc gtctgcaaca aggttcggtg gactcctcga 2040 tccactttca gcaatcgatt gagaagatta tgcgtgaagc gaatctgttg tacgagcatg 2100 tactggcctg gattgatgac cttctaatct acgcagacac gatagacgaa tttttgtcgg 2160 ttcttgaccg tgtctactgt actttggaga agaatggact atttctcggg ctgaataaaa 2220 tctgtctgta tactaccgaa gccaagtggt gcgggcgaat cattaaagag gacgggatcg 2280 cgtatgatca cgaaaggatt cagacgctga ttgatcttcc tgagccgaaa accgcggctc 2340 agttgcaaca atttctgtgt gcggtaggct ggatgcgcaa tgcgctggtt gattttgctc 2400 gagtagctgc accactgcaa gcgcgtctac agactgcgtt ggaagggacg aagcggacga 2460 agcatgttgc agcgcgcgtc gcgatcgatt tcactgcaga agaacgtaaa cgtttcggcc 2520 aagttaagca actactcgct aagtcagcca cgctggtgac tccggatgac tcggatgagc 2580 tcatattgat gacggacgcc agcgacgcgg gttggagcat catcgcgacg gctgtcgaga 2640 actgggatcc tgcgactagc atcaccgagc aacagcatca actcgtgcac tgcatgagcg 2700 gcacgttcaa gggagctgca cagcattgga gcgtctcgga aaaagaggcc tttccgataa 2760 ttaaagctgc gacggacttg gactatttgc tgatccgctc taaaggtttc cgcctatatt 2820 ctgatcaccg caacttgatt ttcatattcg ctccgggcga tgagatcaag aaacatgtac 2880 gcggaaaatt gcagcgctgg agtttgaaat tgaatgaact ccgatacacc attgagcata 2940 tcagtggaga agacaatgtg tgggctgata tggcctctcg ttgggcttgc atcgagttgc 3000 ccagggagac tacgacagtc aagcgctggc agacgcagga tacacatgtg caggtggagc 3060 ttcgtccact gcgtccagac tctgagtggc ctacggagaa cgacatcaaa tgtgcgcaac 3120 tagcaacgac gtgcactcgc ccgccgcatc tcgaagagca acctaatggg ttgtggagcg 3180 atgagcaaaa ccggttgtgg attccggagg acgcggaagt gttcttgatg aagctgatgg 3240 tgatcgccca ctgtggcaca atgggccatc gagtggtgaa ggtgatgatc aaccacctcc 3300 aagaacactt ccaccttgag aaattagaac ctcaagcacg agtattctgc agtcgctgtc 3360 tcttgtgctg ccacgtcaag ggtggtaaaa taataccacg accgtggggt gagacttatc 3420 gttccaacga gcgcaacgaa gcactgcaca tggactactt gttcattggg gactacaatg 3480 gagagagcaa ctatctgctg gtcatgaaag atgacttttc ccactactgc gaattgattg 3540 agtgctcgag tgcaaatgct gccacagcag ccatggcaat tctggactgg aatagtcgat 3600 acggtatgcc tcagttgctg atcagcgata ctgcaacgca ctttaagaac caactactgg 3660 aggaactgtg ccacaaaact cagatgactc agagcgttac tctcgcgtat tgcccgtgga 3720 tcaacgggag cgttgagcga ctaaatcgcg atattctgca ggtattgcga gtcatgctgt 3780 tggagtataa ggtggagcaa gataattggg ccgcgctact accactcatt caagcgaatc 3840 tgaatcacag cccggtggca tcgctggcca accacgctcc agccgaagtc tttcttggag 3900 taaggcaaag actccactac agaaaatcct gatcggcagt gacgctattg cggctaatgt 3960 ggtgaccaca ggtgatttct cgccaggcgt gcgtgaagct gtgggcaact tgcgagcgtc 4020 gctcgatggc atgcaccgag aagtggccac ggcgaaggaa aagcaaacta aacgcaacca 4080 gagcaaccag cgaggtgctc gctcagtcaa ctttcatgtc ggcgactacg ttctctggtc 4140 tcgagtcgat gcaaagaaga aaggcaacaa actttcggtc acgtgggtag ggccgtaccg 4200 tgtgattggc gcaaacgcca actcgtttga aatcgagcat ttgatcactg ctacgaccaa 4260 gtttgctcat gcctcgcgtt tgaaaatgta tgcggaccaa agtctggatg tcaatgagga 4320 aatgttggca cacattgcaa accaggacat ctaccttact gtggaggcct tcactcagca 4380 ccgcaagcac gcaacgcaca cttatgaaat actagtgcgt tgggaaggcc tcgaagccat 4440 cgaggactcc tgggagcctg tgacgactat gtatgaggat gttccgatca agttgcagga 4500 ttacgtcgac agtgccgctg acgacgaatt acgccagttc gttatccaac tgcggtcgca 4560 ttcgcaagga agaaagcgta cagagactac tgtccagcca actccatctc accgtcgtgg 4620 caagggtggc ggggatgttg ctgctcagac gaagccgcca aaactgaatc gccgccaacg 4680 tcgcgccaaa ggcaacacca agaagtagtt caacgcagat tatgggggta gctcctgtac 4740 gaaggtctgc ttggagggcg g 4761 // ID Copia-8_PIT-I repbase; DNA; PLN; 4516 BP. XX AC AATU01002990; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PIT_; KW Copia-8_PIT-LTR; Copia-8_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4516 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002990; Positions 78113 73598. XX CC 'GGGCT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 3449..4477 FT /product="Copia-8_PIT-I_3p" FT /translation="MCVYYRSCEGTLLVVGVYVDDLLVTGTQQKAVDAFFS FT ELSMLAIKDLGLANKFLGIRVVYDEETGYDLDQELAIKEMLREHGMSSVHG FT VRTPIGAESNDVDETADVLLPLTGGDNEITIRKFQSLVGSLMWVARCTRPD FT IAYAVHKVSRRTHSPTMSDWKLGKRIARYLAGSMTLRLSMKGNCPLEEPLN FT VVAYSDADFAADKSDRKSVTGGLLSVDGMPVSWVCRKQTGVSLSTMEAEFT FT AASVMATELLGMRELLNELGVAFNSPMSLRVDNQAALKQLDGEESSSKAKH FT IDVRVKFVSSYTKNGVLKPEYLQSEEMPADILTKALEAPRLVELRTVVGLH FT " FT CDS join(55..1671,1675..3462) FT /product="Copia-8_PIT-I_1p" FT /translation="MERRTPPTPAQGESATTEQDEASELLRLLRGVAGRLD FT KLEKSQVKLEKRLETPKQDPKSMVDTSLFAWALGRGSRMHIDSLSGTPQTQ FT APRRPTVHPQYFGLRHADVGVHETGMSELQRLFAEEHAAQANQEAQQPPAA FT PVPAQAQATPVQNQGWAFRYPDARQKKLAIRPFDGKELCVGLGSGFLAWGR FT RFERQVALGQSTCGFAWSEDVKVDLLGHYLSGTAERYYNKQVDTWWNQLPT FT LQYVMERMLDAFKTNITPAQAMKLFTAPKDTKRSWPEHYMYLVAISKATGG FT GADYLALSNIVQYASAELRTVLMAKVDQSRTDFLHYAEELAHFAQSWETDA FT TKQKSLGRETVNVVKDHTKQRKETRSCHECGRVGHLRAACPDLKKPGDITL FT AVGEHTSDTTDLWILDSGSSRHLVNDESFLKDVKECSDECVQPNGEPLHIT FT KRGNVLLCVTACGEEQMVELTNVYFAKGVVHNLISYGMFDKRGFELTHRAG FT RRVVAAKNGGRVAFDVEMRSNVLVVPAVVEPRRELPSNVIMAASRELTESA FT EVPRDVQQGTLLGFHKRLAHLNYDAVELLAKDPSSGIHLTDRKRVNCLTCA FT EGKQTKNRRSKKDTGTHSPIDRVGGVICSDLKGPMTPKDRLGNRYMINFID FT FKSNYCRVFLARTKDAAAKLFEHFLVYFEKAFNCKIHVLRTDSGGEYENVD FT LFCKRTGVTRQRSEARNQSSNGKAERMHRTIMNMARCMIFACGLPLRFWGD FT AVQYAAYILNRAPTNSNPGRASPLKELTGKTPPLGEIVVFGSPCTVYRDPR FT KKNFAQRAQKAMIVGIGEETKGYRVYLPKDHVVVTTQHVKNIETLDKKQNL FT QVQRLYLQAGETLEGSEPADNGAQALEAGAPNVKGKKKRTSTKKKKSWSRE FT RHVTRSVAKNARVTANETAQSQETTRNVVNSVVEYDPKSYQEAMRSKHKDK FT WLAAMADELHALEGDGVWRIVRKPEGCHVLNTKWVFKTKVDAEGAIERLKA FT RLVACGNEQQFGIDYSVTFSAVIEMSSVKLIFVLARKWRVPAKHGDVPNAY FT VKAVKEPELDIYLRIPREMVVPKELRCLLGVSSDNELVLELKKTLYGLKQA FT GRLWNQLPTDANGHRLLAEPYGHVRLL" XX SQ Sequence 4516 BP; 994 A; 1323 C; 1472 G; 727 T; 0 other; ggttttgagc ccagatgcca acggagaccg accgcgcaag ggccgcctcc gtcgatggag 60 cggagaacac cgccgacgcc cgcgcaaggg gagtcggcga ccacggagca ggacgaggcg 120 tcggagctgc tgaggctgct ccgcggcgtc gccggccgac tggacaagct ggagaagtcc 180 caggtgaagc tcgagaagcg ccttgagacg cccaaacaag acccgaagtc catggtggac 240 acgagcctct tcgcgtgggc cctgggacgc gggtcgagga tgcacatcga ctcattgagc 300 ggcacgccgc agacgcaggc ccctcgccgg ccgacagttc acccgcagta tttcgggctg 360 cgacacgcgg atgtcggggt ccacgagacg ggcatgtctg agctgcaaag gctcttcgcg 420 gaggagcacg ccgcccaggc taatcaagaa gcacagcaac cgcctgcggc gccggtacca 480 gctcaagcac aagccacgcc tgtgcagaat cagggctggg cgttccgata cccggacgcc 540 cgtcaaaaga agcttgcgat ccgcccgttc gacggcaagg agctgtgcgt cgggctgggc 600 tccggcttcc tggcttgggg cagaagattc gagcggcagg tggcgctcgg gcagtcgacg 660 tgcggcttcg cgtggtctga ggacgtgaaa gtagaccttc tcggccacta cctgtcgggt 720 acggccgaga ggtactacaa caagcaggtg gacacgtggt ggaaccagtt gcccacgttg 780 cagtacgtca tggaacggat gttggacgcg ttcaagacaa acattacacc cgcccaagcc 840 atgaagctgt tcacggcgcc gaaggacacc aagagatcgt ggcccgagca ctacatgtac 900 ctcgtggcca tctccaaggc cacggggggc ggcgccgact acttggcgct gagcaacatc 960 gttcagtacg cctccgcaga actacgtacg gtgttgatgg ccaaggtgga ccagtcgcgt 1020 accgatttcc tgcactacgc cgaggagctc gcacacttcg cgcagtcgtg ggagaccgac 1080 gcgaccaagc agaagtcgct gggccgcgag acggtcaacg tggtgaagga ccacaccaaa 1140 cagcgcaagg agacacggag ctgccacgag tgtggccgtg tcggacatct acgggcagcg 1200 tgtccagacc tcaagaagcc aggggacatc acgctggccg tcggcgagca caccagcgac 1260 actaccgacc tgtggatcct agacagtggt tctagtcgtc acctcgtgaa tgatgagtcg 1320 ttcctcaagg acgtgaagga gtgcagcgac gagtgcgtgc aacccaacgg tgagccgtta 1380 cacatcacca agcgcggcaa tgtgctgctg tgcgtcacag cgtgcggtga ggagcaaatg 1440 gtggagctca ctaacgtcta ctttgcgaag ggcgtggtgc acaacctgat ctcctacggg 1500 atgttcgaca agcgaggctt cgagctgact caccgtgccg gaagacgcgt cgtagcggcc 1560 aagaacggcg gacgcgtggc gtttgacgtc gagatgcgga gcaacgtctt ggtcgtgcct 1620 gccgtggtgg agccgaggcg cgagctgcca tcgaacgtga tcatggctgc ttaaagccgg 1680 gagctcacgg agtctgcaga ggtgccgagg gacgtgcagc agggcacact gctgggtttt 1740 cacaagcgtc tggcccacct caactacgac gcggtggagc tgcttgccaa ggacccgagc 1800 tcgggcatcc acctgaccga ccgcaagcgc gtcaattgcc ttacgtgcgc cgagggcaag 1860 caaacgaaga accgacggtc caagaaggac accggcacac actcacccat cgatagggtg 1920 ggtggggtca tctgctccga cttgaagggg ccgatgacac ccaaggatcg gttgggcaac 1980 cgctacatga tcaacttcat cgacttcaag tccaactact gccgcgtgtt cctggcgcgt 2040 accaaggacg ccgcggccaa gctcttcgaa cacttcctcg tttacttcga gaaggcgttc 2100 aactgcaaga tccacgttct ccgcaccgac tctgggggcg agtacgagaa cgtggacttg 2160 ttctgcaagc gaacgggcgt gaccaggcag cgcagcgagg ctcgcaacca gtcaagcaac 2220 ggcaaggcgg agcgcatgca ccgaaccatc atgaacatgg cgcggtgcat gatcttcgcc 2280 tgcgggctcc cgctgaggtt ctggggtgac gcggttcagt acgccgcgta catcctgaac 2340 cgcgccccga ccaactccaa cccagggcgt gcgtcaccgc tgaaggaact gacgggcaag 2400 acaccaccgc tcggcgagat cgtggtgttc gggtcgccgt gcactgtgta ccgggatcca 2460 cgcaaaaaga acttcgcgca acgcgcacag aaggctatga ttgtgggcat cggcgaggag 2520 accaagggct atcgggtcta cttgcccaag gaccacgtgg tggtcacgac gcagcacgtc 2580 aagaacattg agacgctcga caagaagcag aaccttcagg tgcagcggct gtaccttcag 2640 gccggcgaga cgctcgaagg cagcgagccg gcggacaacg gagctcaagc gctggaggct 2700 ggggccccaa acgtgaaggg caagaagaag cgcacgtcga ccaagaagaa gaagtcgtgg 2760 tcgcgcgagc gccacgtgac gcgctccgtg gccaagaatg ccagagtcac ggcgaacgag 2820 accgcgcagt cacaggagac tacgcgcaac gtcgtgaaca gcgtggtcga gtacgacccg 2880 aagtcgtacc aggaggcaat gcgcagcaag cacaaggaca agtggctagc tgcgatggct 2940 gacgagctgc acgcgctcga gggcgacggc gtatggcgca tcgtgcgcaa gcccgagggc 3000 tgccatgtgc taaataccaa gtgggtcttc aagaccaaag tggacgcgga gggcgccatc 3060 gagcgactga aggcgcgcct cgtcgcctgc gggaacgaac aacagttcgg gatcgactac 3120 agcgtgacat tctctgctgt catcgagatg agcagcgtga agctgatctt cgtgctcgcc 3180 aggaagtggc gcgtccccgc aaagcatggc gacgtgccaa acgcctacgt gaaggcggtg 3240 aaggaacctg agctcgacat atacctgcgc atcccgcgcg aaatggtggt cccgaaggag 3300 ctgaggtgct tgcttggcgt gtccagcgac aacgagctgg tactggagtt gaagaagacg 3360 ttgtacggcc tcaagcaagc cggacgcctc tggaatcagc tccctacaga cgctaacgga 3420 catcggcttc tcgcagagcc ttacggacat gtgcgtttac tatagatcct gcgaaggcac 3480 cctgctggtg gttggcgtat atgtcgacga cctcctggtc acgggcacgc agcagaaggc 3540 cgtcgacgcc ttcttcagcg agctcagcat gctcgcgatc aaggacttgg gcctcgccaa 3600 caagttcctg ggcattcgcg tggtatatga cgaggagacg ggctatgatc tggaccaaga 3660 gctcgcgatc aaggagatgc tgcgcgagca cggtatgtcg tccgtgcacg gcgtgcgcac 3720 gcccattggg gcggagtcca acgacgtcga cgagaccgcg gacgtactac tgcctctcac 3780 tggtggcgac aacgagatca cgatccgcaa gtttcaatcc ctcgtgggca gcctcatgtg 3840 ggtggcgcgg tgcacgcgcc ccgacatcgc gtacgcagtc cacaaggtgt cacgccgcac 3900 acacagcccc acgatgtcgg actggaagct tgggaagcgg atcgcgcgat atctcgcggg 3960 ctcgatgacc ttgcggttga gcatgaaggg caattgcccg ttggaggagc cgctgaacgt 4020 tgtcgcgtac agcgacgcgg acttcgctgc cgacaagtcc gacaggaagt ccgtcacggg 4080 cggattgctc tctgtcgacg ggatgcccgt gtcctgggtc tgccgaaagc aaactggagt 4140 cagcctctcc accatggagg cggagtttac ggcagcgtcg gtgatggcca ccgagttgct 4200 ggggatgcgc gagttgctca atgagctggg cgtcgcgttc aacagcccga tgtcgttgcg 4260 tgtcgacaat caggctgcgc tcaagcagct cgacggcgaa gaatcatcct ccaaggccaa 4320 acacatcgac gtcagagtga agttcgtgag ctcctacacg aagaacggcg tgctgaagcc 4380 ggagtacctg cagagtgagg agatgcctgc ggacatcctc acgaaggctc tggaggcgcc 4440 aagactagtg gagttgcgga cagtcgtcgg cctgcactaa ggagtgcagc agaccaacac 4500 tggcggcgag gaggag 4516 // ID Gypsy-5_PIT-I repbase; DNA; PLN; 12045 BP. XX AC AATU01003047; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PIT_; KW Gypsy-5_PIT-LTR; Gypsy-5_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12045 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003047; Positions 47860 35816. XX CC Positions [5246-5701] - Reverse transcriptase CC Positions [7020-7499] - Integrase core CC 'TTGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 986..2089 FT /product="Gypsy-5_PIT-I_3p" FT /translation="MPTNIRNAIRMLQPFYSEGASVEKARFFWEAFENATI FT GLDEPLRLSAFRECLKGKVGEDWWMYSRINSFEALRTRFHNQFISQTPLQL FT IENLKNTKRPRGMSAEVWGDMISSLCDDAQCYDTQMRYQYFLSGLRNRDWR FT NALTTTMIDSIPAAVAMLLLKNMHRPVEDDSEFDNVPSPKASQENAVLNRM FT MNMMQQTQYLLAQQQQQQLQQQQQLMERPLTTAYASPAMNVSAAYSPPDPN FT PSLHYQPTGTLPITPIRGVRVGPDLRTQDGLLVCGRCHTLGCSRIHCRRGK FT ATCPHCKEVGHIGPECERDPPSGFRNTQPRNGRNCSLCDESSHMLAECSLK FT TSLKRLGGPAGVTAGPVLGQAPNQQ" FT CDS 2222..3529 FT /product="Gypsy-5_PIT-I_4p" FT /translation="MSSALPERNETNVSNEHMTRTEEILPFEHEGRTAPVW FT NGVSVVSNPNDCWKTEREAFVKEVGSGPVWDGSAIAAHVDERSNTNLRVIT FT RDDRESEIETTNDKLSKGGETEEPQLQASSTERDHPSTSTNHKSVVSSGLD FT QDEERGEPNDGPIQEELLPDVTEVLESPTREEYGATEASVPVPKAEPREQE FT KDVTPPERDDASEKGSEDVASTKSPKNEPEKEPSFARVFTKEELDTLKEGK FT PSELAEEKEEYDKELEDRLFPLDEVDLKRRLVENAEQSKELSLAELSGLLG FT IPEEQLARTRDSSPGRLSTPEYWLEWFQKTLASSGEAKRANRNFQEEKPVR FT INSVTSDDSDYRDEGGGTATKRFSWQDAPKTIVHFPELRVPPLPGEECPAD FT PSVVEDNIALTLGSFPKRPSDLSETEYELLASRGIVPDLGEP" FT CDS 5868..8501 FT /product="Gypsy-5_PIT-I_6p" FT /translation="MKGARFFWSDDCEAAFPALKRKPVEPPILVYPDFSKR FT FHLYVDSSKLAVGACLMQTVEGRERVVAYASKLLVGSEKNWVHKEDGTSEI FT ECWGIVWATRKFRCYLDRCELDLYTDHKALTWVFNETNRTSNAKLARWAME FT LFQLRFKVFHKPGTSMGHVDGLSRLHTQTINAISMAELLNDSDESPPSTVE FT VGETTTLDSTLLPSGTLPEDAGETRPEPFPNEEDVTDQLLVSPVDVFGLQQ FT TRFVEEQKRTPWIQAMIAFLIDGALALDPQMRTKILLMAPNYSVKNGVLIR FT RVHLKARAGPASTLEVPVIPLPFISTVLHHCHKDVLAAHVGVTKTLDKVRK FT HAYWHGWKKDVAEYVRECTVCGSGKGYRPWRNGRMQRMSVQELSGPFSLLV FT VDAIGPLVATPRGNKFILVFADYFTRWVEAFPVARLDTVTFVEVMVNEVIS FT RHGVPEKLLSDQGSNFISNLARSFYETLGIKKLVGAAYHPQTQGLVECFNG FT TLIGMLKMYVNEAQNDWDLYLPRVLFAYRSSYHEALKDSPFFSLYGRDPVL FT PLDLAFLSTNNGWNSNEVASYRRKLFLSLRDTRRLVERQLLKAQGRHEQRL FT SNQVPVKFKEGDPVWVYQYFRARRGEKTTKKLAFAWHGPYRVVGIVGENSY FT RVAIPSHPNRVVTINVNRLKRFQGRWSRPFPSEVPEGVQSSPGVDDDGPLS FT EEDLPSTSFVERLLIGGEKTALTGVHCSVIDIIARRKKNREEQFLVLLATY FT ETLWRPRNTLLPTYAALIKAFEETRRREGDLPELRRSSRLEDANAGVDKKS FT YSSRERESWRVDPMSQSKLTTPPPSKSVLKNTFYDFVYFWILLHKWLISYI FT PKRKTILPRSQEKKKTKTTSGEESW" XX SQ Sequence 12045 BP; 2810 A; 3239 C; 3413 G; 2583 T; 0 other; tctggtggag aagcagggta gtctgctagc tggagaaggt cttgctccaa gtgaagtctc 60 gcggagaacg tcagaaggaa ggacaagatg tcggctacta gcaacagaga agatgagagc 120 gccactgtcc gggaagaaga aggcccgacc gagagtctgc cttcgagaat gcgacccagt 180 ctgtcgacta cgcaaggcct ccaaaacgtg cagaatatca tagaccaagc ggctaaccga 240 cttgggggga acaactctag tgctggtgtc gagccacccg cggacgcttt gggctccggg 300 gtccctgcga ccttcacttc ggaagagttg gactcgatgc tgaccctgaa cggcggaggc 360 ggccgaggta tggtgcaagg ctggcttaac tccctcaact ggttgagatc cattgcccct 420 cctgaaattg ccgccgctat ggagagcact ggtgggaacg gtctcgtggg gactccacct 480 cctacggctc gagtaaggac tgcaatcccg tcgtaccaag gttttacaat ccgaaccccg 540 aatacgtcat atgggcagga cttcaacccg ttcttctccc taccaactgt ccctgaaaac 600 ggtggacgtg cttccccggc aagtattcct ccgaggacct ctaacgctcc tccttggggt 660 ctccagccct cgggtaactt gcgaggtggc ggggagaacg ctccagcagt agccgttccc 720 gttcctcaga gggttccttt ccaggtctcg tcgcctaccg ttcaaattcc taccccaagg 780 cctggggtct cgaacttcga ttaccagtgg agtcgcgtac ggagtcgacc ctacgagaac 840 aacccgagct tcacaaggaa acggaggaac tacggcttct gccggaaccc accagggtcc 900 tgcgtatggg gaatatggag gtaactccta ctactcctcg cctacgtatg gtaatacgcc 960 ttcgtctact agtggccagt atggtatgcc cactaacatc cgaaacgcaa ttcgcatgct 1020 ccaacccttt tactcggaag gagcgtcggt ggagaaagct agattcttct gggaggcctt 1080 cgagaacgcc acgatagggc tggacgaacc cctgcgtctc agcgctttca gggagtgctt 1140 gaaaggcaag gtcggcgaag attggtggat gtactcgcgc atcaacagct ttgaggctct 1200 gagaactcgg ttccacaacc agttcatcag tcagacccct ttgcaactga ttgagaatct 1260 gaagaacact aaacgacccc ggggaatgtc cgccgaagtg tggggcgaca tgatttcaag 1320 tctctgcgat gatgctcagt gctacgacac tcagatgcgt taccagtact tcttgtctgg 1380 acttcggaac cgagattgga ggaacgccct caccacgaca atgattgact ccatccctgc 1440 ggctgtggcc atgctgctcc ttaagaatat gcaccgtccg gttgaagacg actccgagtt 1500 cgacaatgtg ccgtccccta aagcttccca agagaacgct gtcctcaacc gcatgatgaa 1560 catgatgcag cagacgcaat atctactcgc tcagcagcaa cagcaacaac ttcaacagca 1620 acagcagttg atggagcgtc ctctgacgac cgcctatgct tccccagcga tgaatgtatc 1680 tgctgcctac tctcctcctg atccgaaccc ctctctgcac tatcagccta ccggaacgct 1740 tcctattacg cctatcaggg gcgttcgtgt gggtccggac ttgcgaaccc aagatggtct 1800 tctcgtgtgc ggtcggtgtc acactctggg gtgtagtcga attcactgtc gccgcggcaa 1860 agccacctgt cctcactgta aggaagtggg tcacatcggt cctgaatgtg agcgtgaccc 1920 tcctagcgga tttcggaaca ctcagccgag gaacggtcgc aattgctccc tgtgtgatga 1980 atcgagtcac atgctggcgg agtgctctct aaagacgtcg ctgaagagac tcggcggtcc 2040 ggcaggggta acggcgggac ctgtcctagg acaagcgccc aaccagcaat gatgggggcg 2100 agagggaggg ggagggagtg tcgctccttc ctcttgtcta tgaatcgaca caaatggtaa 2160 cacttcgaac tccgcggagg agtcgaccaa gaggtatgaa gtgtgtcctg ttggaggtgg 2220 gatgagttcc gccttaccgg aaagaaatga aacgaacgta agcaatgaac atatgacgag 2280 aactgaagaa atactgccgt ttgagcatga aggacgtacg gcgcccgtgt ggaacggggt 2340 atcggtagtc tcaaacccta acgactgttg gaagacggag agagaagcgt ttgtaaaaga 2400 ggtaggctcg ggacccgtat gggacggttc cgcaatagct gcgcacgtcg acgaacgctc 2460 caatacgaac ctaagagtga ttacgagaga tgaccgagag agcgaaatcg aaacaacgaa 2520 cgacaaacta agcaagggag gagagacgga agagccgcaa cttcaggcgt cctcgacgga 2580 acgagaccac ccgtcgacgt caacgaacca caagagtgtg gtttcgagcg ggctcgatca 2640 agacgaggaa agaggtgagc ccaatgacgg ccctatacag gaggagttac tcccagacgt 2700 gacggaggta ctcgaaagcc caacccgaga agaatatgga gctaccgaag ctagtgttcc 2760 agtaccaaag gcggaacccc gcgagcagga gaaagacgtg acccctcctg aaagagacga 2820 cgcctccgaa aagggctctg aggacgtcgc cagtactaag tccccaaaga atgaaccaga 2880 gaaggagcct tccttcgcga gggtgttcac caaagaagaa ctagatacgt tgaaagaagg 2940 taagccatcc gagctggctg aagagaaaga agaatatgac aaagagctcg aagaccgact 3000 gtttcctctc gatgaagtcg acctgaagcg ccggttagtt gagaatgcgg aacaatcgaa 3060 ggaattgtct cttgccgagt tgagtggctt gctaggcatt cccgaagaac aactagcgag 3120 gacccgagat tcttcccccg gtcggctatc tactcctgag tactggttgg aatggttcca 3180 aaagacgcta gcctcgtccg gagaagcgaa gcgagccaac cgtaatttcc aagaggaaaa 3240 gccagtacgg atcaactctg tgacgtcgga cgactccgat taccgcgacg aagggggagg 3300 gaccgcgacg aagaggttct cgtggcagga cgcgccgaag acgatagtgc acttcccgga 3360 gctgagggtt cctcctctac caggagaaga gtgtcccgcg gacccctctg tagtggaaga 3420 caatatcgcg ctaaccctgg gaagtttccc caaaaggccc tccgacctca gtgaaaccga 3480 gtacgagctg ctggcctctc gcggtatcgt gccggacctt ggcgagccat agtgcgacga 3540 gccgtatact tcctcgcaaa ggctgaagct tcaagtagag gtgactggtg tgaagggtgt 3600 attggcgaag gatcgctaga tgaagaaaag aaagatgact ccccgccccc cactaggctc 3660 ccagatctcc taagccggat cgaggactgg atcaatagcc tcgctgttcc cactgactcg 3720 cgatcgaaag agttactgac taaaaggatt gcggaccttt acgaggagaa ggctgaccaa 3780 ctccgcttga agatcctcga gagaagttca ccctgccgac tctgtcgttg gaaagatcct 3840 gctcccaggg gctctccagc gccgaagata gtcagtttcg actgctcctc tctattcggt 3900 aaccgtaccg aagccctcgg accgaactgt tcttcccgag ataaggaaaa cgggttgtac 3960 ggctatgtga aagtcgtcgc tgacgctcca gaacctcgcc ccaaaccagg cctggtggaa 4020 gtaccgagct ctactagtaa ctggtctact gacgaggacg aaggaatcgt tcccctcggc 4080 aagcgagtga tcggatcggt ggggggcgtg gaagctctat cgtgggggtt tatcgagagc 4140 ctcccggccg aacttctcat cgactccgga gccgtagcgt gcctagtgca taggcgggta 4200 ttgaagcgtc tcggcttaac taactcttct ctaatgccct acgttggcag tctgaacggt 4260 gtgtccgggt ctgcgctcga tatagaagga gtaatctact tgccggtgac attgggctct 4320 gtcgagaagg gaataccgtt tgccgttgta cctagactac atgtcgacgc tatcctgggc 4380 accaacgctc tcaaggactt tcgcgccgtg gtggacttgg acgagaatac agtcacacta 4440 aaggacacga gagaggtgtt ccctggggtc tcctcgggtg gaagagtctt acctgtcccg 4500 catctcatct accattcgaa tctgccctgg tggacaagca ctagtagttg cggaggtgca 4560 aggtcaactg agcgacggga ccaccgtcct catagagggg ctttctgcgc tggatgactc 4620 cattaaagtt gctaggaccc tgtgcactgt gtataacgac ctagtgatcg tggaagtatg 4680 caacccctct atcgagaaca ccgtcgtcaa gagaagcacc cgattggcga gtgttacggt 4740 aatcccagcg tcggtgcttc agcaaggaac cgctgcgagt gtaaagcacg gaaccgacct 4800 gcccggcgag gcccagacta gggaccaaag agctcaagac ctgtggatcc actcggtcct 4860 tagcgcctct aattcgacga ccgaagtcgc tcaagaatcc ataccagggg tggacatagt 4920 actcaaggag gaactctacg tcgacctgga cgagtctaaa ttggggagcg aacagaagag 4980 aatattcacg gagttcctcc aaccgttcaa ggacatgttc gtcgaaacct cgatgcgccc 5040 cggacggacg aacctgctcg agttttctat tgatactgga gagcactcgc ctataaagca 5100 acccccttac cgagtgtcca aggcggaagg agacgtgatg gaatccgaga tacaagaata 5160 cttaaggcaa gaactcatac gaccctcttc tagcccttgg gcgagaccgg tgcttatgat 5220 ccgcaaacct gacggcggga tacggttctg catcgactat cgaagactga acgctgtgac 5280 tatcaaggac tgctacccga tgccgctcat cgatgacatt ctagatgtac tcggcaacgc 5340 taagctgttc tccacgatgg acatcgcatc cggctactgg aatgttccga tggctgctga 5400 tagcgtggag aagactgcct tcacctgcaa atatggtctc ttcgagtggc tcgtaatgcc 5460 gttcggactg tgtaatgccg taccggcctt cgaacgactg atggagactg tgcttgttga 5520 ccttaagtga tggacttgtc tagtgtacct cgacgactgc gtggtcttca gtgaagactt 5580 tcctacccac ctagtacgac taaaacaagt cttggattgg ttccggtcgg cgggattcaa 5640 gctcaagatg aaaaagtgca agtgggcacg cgaccaggta gcgtttttgg gtcacatcgt 5700 cactccgtct ggcatattgc ccaaccccga aaaggtcaag tcggtgatga acgtgctcag 5760 accgcacgac ttgcacactg tgagggcgtt cctgggttga ctagctactt caggcggtac 5820 atcccggggt tacgcgacca tatcggcccc aaatcgaacg gcttaagatg aaaggggccc 5880 gattcttctg gagcgacgac tgcgaggccg cctttcctgc actaaagcgt aagccggtgg 5940 aacctcccat cctggtgtat cccgactttt cgaaacgctt ccatctatat gtggactcgt 6000 ctaagctagc tgtaggggcg tgcttgatgc aaaccgtgga ggggcgcgag agagtcgtgg 6060 cctatgcgag caagctacta gttggctccg agaagaactg ggtccataag gaggacggta 6120 cgtcggagat cgagtgctgg ggtatcgttt gggccacgcg caagttccgc tgctacctgg 6180 accgttgcga gctcgaccta tacacggacc acaaagcttt gacgtgggta ttcaacgaaa 6240 ctaatcgtac gagcaacgct aagctggcta ggtgggccat ggagttgttt caattacgtt 6300 tcaaggtgtt ccacaagcct ggtacctcga tgggtcatgt ggatggtctg tccaggctgc 6360 atacccaaac catcaatgct atctctatgg cggagctact caacgattct gacgagtccc 6420 ctcctagtac tgtcgaagtc ggggagacta cgactctcga ctcgactctg ctcccttcag 6480 ggaccttgcc cgaggacgct ggcgaaacta gacccgagcc gttccccaac gaagaagatg 6540 ttaccgacca actcctagtg tcccccgttg atgtgttcgg gttacaacaa actcgcttcg 6600 tggaagaaca gaagaggaca ccctggatcc aagctatgat agcgttcctt atcgatggag 6660 ctctagctct ggaccctcaa atgcgcacca aaatcctgct gatggcccct aactactcgg 6720 taaagaacgg agtactcata cgtcgcgtac acctgaaggc tcgcgctgga ccggcgtcta 6780 ctcttgaagt tcctgtgatt cccctgcctt tcatatcgac ggtactacat cactgtcata 6840 aggatgtact tgccgctcat gtcggagtta ctaagacgct cgacaaagtg cgcaagcacg 6900 cttactggca cgggtggaag aaggatgtgg ccgaatacgt tcgggaatgc accgtgtgcg 6960 gcagtggtaa aggctatcgc ccttggagaa atggccgaat gcagaggatg tccgtacaag 7020 aactatcggg acctttctcg ctattagtgg tggacgccat aggtccctta gtggctactc 7080 ctcgaggcaa caagttcata ctcgtcttcg ccgactattt cactcgatgg gtcgaagcgt 7140 tcccagtggc ccgcttggac actgtaacgt tcgtggaagt tatggtgaac gaggtgatct 7200 cgcggcacgg agtccccgag aaactactga gcgaccaagg atccaacttc atctcgaact 7260 tggctcgatc cttctacgaa acactcggga tcaagaagtt ggttggagct gcttaccacc 7320 ctcagactca ggggctagtc gaatgcttca acggcacgct gatcgggatg cttaagatgt 7380 atgtcaacga agctcaaaac gactgggact tatatcttcc ccgagtactg ttcgcatacc 7440 gatcgtcgta tcacgaggcc cttaaggact caccattctt cagcctgtat ggccgggacc 7500 cggtgttacc tctggacctc gcgtttctca gcacgaacaa cggatggaat agtaacgaag 7560 tcgctagcta cagacgaaag ctattcttat ctctacgaga tacgagacga ttagtagagc 7620 gccaactctt gaaggcccag ggcagacacg agcaacgact gagcaaccaa gtgccggtta 7680 agttcaagga gggagacccg gtgtgggtct accagtactt tcgagctcgt cgcggggaaa 7740 agaccacgaa gaagctcgct ttcgcgtggc atggtccgta ccgtgtggtc gggatcgtgg 7800 gagagaactc ctatcgagta gccatccctt ctcaccccaa tcgggtcgtg accattaacg 7860 tcaataggtt gaaacgtttc caagggcgat ggagtcgacc gtttccttct gaagtacccg 7920 agggagtcca gtcgagtccg ggtgtagacg acgacggacc tctatcagaa gaggacctcc 7980 cctctactag cttcgtagag agactcctga ttggagggga aaagacggcc ctgaccggag 8040 ttcattgctc tgtgatcgac ataatcgccc gacgcaaaaa gaaccgtgaa gagcagttcc 8100 tggtgttgtt agctacttac gagactcttt ggagaccacg aaacacacta ttgcccacct 8160 acgctgctct gataaaggcg ttcgaagaaa cccgtcgtcg ggagggagac ctaccagaac 8220 tacgtcgcag ctcgcggttg gaagacgcta acgccggcgt tgacaagaag agctactctt 8280 ctagggagag ggaatcgtgg cgggtcgatc caatgagcca gagtaaactc acgaccccgc 8340 ctccctcgaa aagtgtcctg aagaacactt tttacgactt tgtatatttt tggattctac 8400 ttcacaagtg gctgatctcc tacataccaa aaagaaaaac aatcttaccg cgatctcaag 8460 aaaaaaaaaa gacgaaaaca acaagtgggg aggaatcgtg gtgaaaaaca aaaagaaact 8520 taaaaaggaa gacgatgcca gtactcttac tctcatccag tgaggaacgg gtctggaatg 8580 gtacgaatca ataacttctc gacggcctct cgttaggctg ttttgtcgga ctttttagcc 8640 ggcgaactag gagctgaatg ctcacccggc gaactcgact tccgaggtgc tgacggggga 8700 ccgcgagggc ggagcgtccc tttgggggca ctgccttctt caaggaagcc accgagcgcg 8760 atcgcttacg cgtgcccgtc ccgcaacgct ggagctgacg aggagtcggc gttttgcctc 8820 cgtcggtttg tcggaagtga ctttactccc ctcgcgtgca aagatgacct gctttgtccc 8880 gcccgggact tccctactcg tcttggtggc tgaggacttc gtcggagcac ttctgactag 8940 cgtgcgaagg tgatcttgct atgtcccgcc gggactccct actcgtcttg gtggctgagg 9000 acttcgtcgg agacttcgac cgagacgcag gacgctcctc cgaacgtgcc cgacgggact 9060 tcttgcgcac tggggacttc gatcgtgacc gtaaaggaga aacagaacgt tctggcgaag 9120 cagcgcgcgc tttgagtttg cctttagcgc gtgaagatga aagtgaccgc ttgcgcgacg 9180 agattaatcg aggcttcttc agggaggtag aactgcgaga cggggaccgg gaacgcttcg 9240 cgcgctcttt cgccctctga gacttgtgag agagctgtag ccgcttgttg ggaggctcgg 9300 cgtcctccga actctcgtcg gaactagaag aaaggcgcag cgtcttctta acaggacgga 9360 gttcttcaga gtcgctctcg gcttcatcct cctcgtaagc cgactcttcc tcactcgctt 9420 cctcccaaat cgccatgtaa gtgccgtccg tacgctcata cgccgcgtat cccgccgagt 9480 cagcttcaga cgcatctaac ggggttacct tgggtgttcg aagagctcct ttctcccgtt 9540 cgcgcgaaag cttggcagtc atcttctgaa gacgcgagca gtgactaagt gcataccaga 9600 ctcccttcga acgatccccc tacccagtga ggttcatgat cctccttcgg cttaatgtcc 9660 agcagaacga gggccaacgc ccggtccgtg agctgactgt cgggcttcga gctatttggg 9720 tctagggctc cggtatgctc caacaactcc gggatggtcg tgaaacctcc ctcgtcgatc 9780 cggaacggct tgagagcgct cttcactttt cgcgagtacg ctcctgagtc gcgcgagtac 9840 agcttagaca agttgtcgat gacggggcca ttgtaggact tggcgtctgg ggcgttacga 9900 ccaggctgtc ctcccatcca cataaggcga cgacggtgcg cgcagctctc gaatagacga 9960 aggaagccga agtagcccca ggtctcgata caaatgctca ggaaccagac gcgtgcgact 10020 actgccgcca tcttagcctt gcgccgctga gtctgcgcgt tggaggtcct caacgggacg 10080 ttcgcctgcc aatcccagaa cttggaacgg ttctcgttcc agaagcgcca gtgagaagcg 10140 tgcacatgcg ggtacttgcg ggttgtacca caagtgcgag cccggccacg gatacgccag 10200 ctggtacggt tcctggccta gctcggccgc ctcgtagtaa acccgtttcc gatcatcaac 10260 cacgggagaa ggagtggtgt ccgacagctt gagtggtaac gggaacgaag accacgggtg 10320 actcggacgc ttcttgccgg aacgaggact ctccgtgacc gtcttcttct tagtcgagcc 10380 agtgctgatg ctcttgagcg gaaactgacc atcttgtgtg aagcgggggt gccgaggcgg 10440 cttcccgcga gtcggtttcc gaggcggcct gggcatgata actaccggcc ccgtcagagc 10500 gtccgaagcc ttccccgtgt cgtccaagat cgcggcggcg atgtcgtcca gaagctcgag 10560 gccgatggag ctagcgttta cggccaggac gtctcgcatg aggatccaga agcgctcgtc 10620 ggccggagtg tcatctgatg aggagccgtc ggagtccgaa gactccacgt tccagacggc 10680 cttgagacgg cgcgtggccg ttccgcgcga ggtgcccata ctggggtggt gagaagagag 10740 ggcgccgagg gttgcgtctg tagtcggggc caaattgtta aatgagcagg aaggctgccc 10800 gtcggtacct ggaccctgac cctgtctctc tctcgaggtt cctgtgataa ctgtatattg 10860 ggtgcaagag agactcctga aaaggacgag gaatcggagt tctcctttcc cagctactgg 10920 acttgacaga tgggtgcgac taagacggat ggaggtcgaa tgacgtcgag aagggtcgtt 10980 ctgggtgtac tcagtttctt atttgtcgag tgtactctca tctaaatgga gcctcacgct 11040 agtgttttct acgagtacgc ccgctgggag ctgtggcccg tgtacgttag ggctgtaacg 11100 gtctgggtcc taacgacccc tctacgtaac gttacctggg agctcttggt ccaagtgtgg 11160 cgtgtgatca agttgaactg cgatatttgg agcgactgtg cgtcgttata ccgagacgta 11220 cttcaggcaa atgaacttcg tcaacttcgg ggtgctacct acgcgtatgg agtgtggagc 11280 gcgctatttg ctgtgcctcc tattgttcta cttaaaggag aagagaagta tggtcgttat 11340 ggacggatgt tgcggagttg gtggatcgcc agcaaggtga cattctccga ctacatcccc 11400 gaagtcctcc tccgtacaag agattcgagc atacgatatt ggtacgcttt ctgggacgct 11460 ctcaaggcca catggatgcg actgtacgcg gtaggagaag ccacctgctg gctagtacta 11520 ctatgcctgt ctctactgct gtacgtcccg gtcaacgcct tcgatctggt ggagttcgta 11580 ctcctgggac cagtgggtgt ggggactgta ctattgctcc tactagctac caactactgc 11640 ctcgagtgga ccggctggag tctcgccgac actcttgtcg tggtggtcgc tggtgtggta 11700 tctcacgctt gtcgccaata cgacgagggg agccccctcc gatctgtctc ttctaaggtg 11760 ctggtcaaac tagcattgac gagtacccgc cgcaacgcct cacaacgtag tatggccgag 11820 gctcggaata tcgaacgtct gcgggtcgac gacgatgtcg aggtgctata tgactttcaa 11880 gccgccgacc ctaactacgt tgaggactgc tccgaggact accccgaagc gttccaacct 11940 cccctgtctg aagaagttgc taacgacgga gtctatagta ctaacgtgag agatgtacgc 12000 agaggaaccg ttcgccgagg acgacgaacg acaagtcggg gagga 12045 // ID Copia-7_ES-LTR repbase; DNA; PLN; 254 BP. XX AC CABU01007306; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_ES_; KW Copia-7_ES-I; Copia-7_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-254 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01007306; Positions 11016 11269. XX SQ Sequence 254 BP; 56 A; 66 C; 72 G; 60 T; 0 other; tgttcgtggg tctacggaca tggtttggat atgttagccg tacgtacaag tgtgacgcag 60 atggtgtaga accttttagg taggggtacg gtgatgatgc accggggccc ccttttgttg 120 tgtgcagcag ccctgctgcc actcctcctc tctgagcacg acagcgccct gggtacgggc 180 gttgcctcac cgtctgaagt taatacacta cacaaacaat acccgataag tacgcggagt 240 acggccgaca aaca 254 // ID PiggyBac-1_FraCyl repbase; DNA; PLN; 3540 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; KW PiggyBac-1_FraCyl. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3540 BP; 1137 A; 617 C; 747 G; 1039 T; 0 other; cagcattcaa gctatggcgc cccgcggggc gccacttttt ggggtcaatt ttttgtaggg 60 gcatatttcc ctcaaaaaat ggacttacac ccccctattg agacacagta catctccgtt 120 caaaggcacg tgctttctta ttaagttaaa ataactcccg gtgggtaagt atggggtctt 180 actactccgg cagctgcagt cctaaataaa attcggaaga gcatgtgttc aaatatagag 240 agtcgaaaaa cgtgccgcgc aaccctcttt ttgttcaata ttattatgtg actcacaccc 300 aagattcaaa atttgaaaaa ttattcaaat cacacgaaaa agaggcaatc aacgcatgga 360 aaatatggat caaatggtca gtcttggaaa ataactagca aatttactaa caaatctttc 420 tcaaaacttg ttttttcaac gaaatatttc aaattttcac acacactaac tactagtaaa 480 gaatatttta gtcactagct gttttcgtca actttaccac gcattttacg tattttcata 540 atattacaat cccattagaa atataatcaa aatatttgga gtaaaatggc ataaaatggc 600 acctagaagc gcccgaatta gtttagaatg ggccaaatca ttagtaggac tgtctatgaa 660 ggtccctgat tactggtggg atggttgcaa aggctatagg ctaaatgatg gggtaattga 720 ttcatacgat agtgttgaac aaaaatggaa tttgttatta aacagtagag atgacaatga 780 tcgatatctt atgaattata ctgctgtttc tacctatgca gatagcgact cctccactat 840 tgacgagtac cagcttccat tcgctgaaat ctatgatgga gatgatatca tcgatgctaa 900 taatggtgtt aggtattttc gaacacctcc ttctgaatgg agtaaagttg agttggaaga 960 tggtgttaat gaaggtggaa ggacaataga tccgattgaa tggactggag agaaggagga 1020 gcccgtaaat ataactgatg aggagatcga atcattaaga gacagtgatg gagagatcag 1080 gtatgagaaa gtttttgaat ggcttcttcc aaggtttggt gaagacaaca atgaaacttt 1140 atttgattgg caagctgcaa gaatgaggaa ttatatgaga aagaaagagg ttgaagatgg 1200 atggaaaccg aaatactatc aaggagatga tacgattcaa cctaatcatg tggcaagatt 1260 ctatggttca ttgcttgcta agatgctaac tggtagtcga tcgattaatc aaatgttttg 1320 tacaagagaa atcttcaatg cagtaccacc tattcaagaa tcaatgccaa agaatgcttt 1380 ggaagacatg actagctgtc tgcactacag tgacgattgg gatcctatgg gagatgggga 1440 ttgggatgag gtgtatgatg atccaaaagt tattgcacca ccacacacag caagacatag 1500 agtgaaacat ggaatattag aagattgcta tattcaggta tgtaatatgt ttgttgttgt 1560 tgttgttgtt gtttcgaatc gattactaac ctaccctcct tgttcttctt cttcttcttc 1620 ttcttacaag cgatggcagt actgtgtcaa cccatcaaga tggattacaa ctgatgaaag 1680 tcgaattgca ggatggtatc atagttgtat gactatagga ccagacccca aaccaattcg 1740 aactggggct actcttcata ctgtctgcat tactcaaggt cctctcagct catacaagct 1800 gtatgctaga gtctatggtg gtaaagatga tcaagatatg aatgtacatc acaagcatac 1860 tgttaagagg gctaagatgg tatcactcta tgattttatg cttgaatcct ttaaacataa 1920 aggacattgt gttgtaatgg actctgcata catgagtgat gctatggctc aaatcggtcg 1980 aaaccattgg ggtattaata tggttggtac ttgtcaatcg gatcggacag gggctggaaa 2040 gcttggcaag gctgatgtca aagcaaagga agttgttatt ggtagtcatg agtctcttat 2100 gtaccaacac aacaccaagc cattgcttta tactgtttgg ggagacaaca actttgtcaa 2160 gacgctttcg aatttccatt caccagttgt agtgagaggt ggaatgaaaa ggaagaaaag 2220 aaatagaagc accaagagaa gagatagaga gtttactgat gtcgattgtc ctattcaaca 2280 aaaggattac tgtgagacat atcatttgat tgataaaggc aatggtgctg aagccaagta 2340 tgatctctct actgaatcgc atttgcatgg ttggtccccc aagttagcag ccagatattt 2400 caatatgaat attaataatg cctacaagat tcattgttat ctgtttaaga agcatcatcc 2460 aaccaaagtc gtaatgccct tgaaagaatg catacataat ttgacccatt cactacttca 2520 aagaggtgat actatgagga agcgaggggg tggagctcca cccaaagcga ccaaggatat 2580 tactacttca tcttctgtgg atggaagaaa agttagatct gattctgtta gacaaccatt 2640 cacctcccct actgcaacag taactggtac accccaaacc ccagtgtctg gtttagatcg 2700 caggactctc cagtatcgac aagttgcttt taaacgtcga aaggaacaac agcctggaag 2760 gagtcatata tcgattccag tggttgtaaa gggaaatagg gctacatctt attgcaagta 2820 caacaaatgc cctggtaaga atactggagc aaagagaaaa aaaccctata ggtcaaagta 2880 tgcatgtgaa gagtgtggtt tggagaaggg aatcgatttt tggctgtgta attctaccaa 2940 gagtgtggat ggaactttgg ttgtagttga ttgtcacaca gcatatcatg tgcaaaagaa 3000 attatataca gcaccatcac cagtgagtac tgctgaaagt agtattatat ccgagctaac 3060 agagtagtag atacttaacc aggtaatata taacctctgt ttaatggaga tcatgtccgt 3120 tatcttcttt tttactgtag ttgagtatac acacacatac tgttagcatg tgtgtgtata 3180 ctcggatttc ccattatcaa tcttgatttt cgatcgaaaa tcactgtatt tagcgcgtgt 3240 taatttagcg cgcttcatgg tttatatact caaatccgtt gactaacttc agcgtaataa 3300 aatcttccac agttattggt ttaactggtt gaaaagataa tattattaac tgaggtcact 3360 ggttcgagtc gatctagcgc aaactaacag gctgaatgat tttgtcttta tctagcaatc 3420 aaccagtgaa aattcgctat attttctaag ttaaattatt ttttttggaa aaataacacg 3480 tgaattaact agcaaatttt ttaataaaaa gacgaaaaaa tccttatagc ttgaatgctg 3540 // ID Gypsy-1_SMo-LTR repbase; DNA; PLN; 190 BP. XX AC ADFJ01000153; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_SMo_; KW Gypsy-1_SMo-I; Gypsy-1_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-190 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000153; Positions 90770 90959. XX SQ Sequence 190 BP; 40 A; 43 C; 41 G; 66 T; 0 other; tgtgagggcc aagtgtacgg ctacgatgcc gtatactaat attagcgtag tggattttgg 60 tagccgtcgg attggtttca atccggacca ctcgctcctg tatataagct agggtttttg 120 ggttaattga tttgcacatt tctgtattcc ctttccatat ttcctgcact cacatttcca 180 tgcactcaca 190 // ID Copia-16_PIT-I repbase; DNA; PLN; 4468 BP. XX AC AATU01000367; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-16_PIT_; KW Copia-16_PIT-LTR; Copia-16_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4468 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000367; Positions 34971 30504. XX CC Positions [1890-2393] - Integrase core CC 'AGTAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1071..1886,1890..4436) FT /product="Copia-16_PIT-I_1p" FT /translation="MMTDEDRAPKHLGKEVVNAVAESQEETRRCHKCKKVG FT HLKMNCPDRSARSNNDQPVKFALDAGNDFKSVDSGASRHLINDPALLAKVV FT QCSGGDTCMLPDGRTMDVAKKGSVILRAIVDGVAAEVEISEVYYAPKLAQN FT LISYGRLIAKGCFLTKRNGKLALMKSNEVVFYVDVRHNKLVARLESVVTNN FT AKMEQLIMNVVDTSTDTASPVVATDTLMGFHARFGHLSLDTIERMANDPAS FT GIKISNRDRKPCMVCAEGKQTRANQPTKSTGHSPIDKVGAVISSDLKGPMT FT PLDRQGNRYMVNFVDHKSNYCKVFMAKKKNLAAKKFEDFLVEFEKRFDVRV FT HVLRTDGGGEYRNVDLFCKENGVARQVSEVGNQAANGKAERMHRTVLNMAR FT CMVFGAGLPLSFWGDAVEYATYVLNRSSSRAIEDRKSPLEVLTGEAPNLRD FT IVMFGSKRSVFRDPGKRAMKKRACEGVVVGKDESTKRYKVYLPSENKVIFT FT RHVQNIRALEEKSDVKPLTVQAPTTTSPPAPRSTPRRSRRSRRKSRRRAEA FT DGDVEVDEPRLSAEPVVLTVSEVKDVNAHADDPEPKNYRQARKCARSALWE FT AAEKEELEALQANNTWKLVKFEPGSIRLHTKWVYKKKGAGTGLIERYKGRL FT VACGNEQKFGVNFFLVFAAVITMTGVKFIFVIAIIWNVPARHGDVPNAYVK FT AKTEEGFEILLFVPDGLVITEEELKTLGVESVDEVGLLLGQSLYGLKQARR FT LWHEHLHRELVKLGFIQCITDACLYFKADSGGMTVVGAYVDDLLVTGTDEN FT RVSQFFADMSVLELKDLGAASNFLGMRVQYNELSGCRFDQEAAIVAMLTKF FT GLDKANSVRSPIGGEDAAESDLAELLPHTAKETTSAGPTVTNFQSLVGSLL FT WIARCTRPDIMFAVHCATRRTHAPTMADWKLAKRIARYLSGTRSHTMDMSG FT DDNAKKLPLRLRSYTDADFAADKSDRKSVSAATIQVNGMTVSWQCKKQSSV FT ALSTTEAEYVAATVGAQELLGLKELLGELDIATKLPMTMLMDNQAAIVQVQ FT SESSSAKAKHVDVKLKFIQDCAKKSIVVPEYVASAEMLADLLTKALPAPRV FT KELREKIGLVDIE" XX SQ Sequence 4468 BP; 1085 A; 1144 C; 1380 G; 859 T; 0 other; ggttttgagc ccaatggtca acaactcaga cgcagacgct gctacggagg cagtccccgc 60 ctcccccgcc gcccacgaaa ggggcgaaga acatcacgaa gagaaggtca cgccggacgc 120 tggagcgctc gcggctctca tcactaagct cacggccaaa gtggacagct tagagcggtc 180 gctggagacg caccagcagc gtgcggccgt cacgccaccc ggtgcggggg ctgggctggg 240 ccagagcgtg taccgtcagg cactgcagca cggaggcagc ttgggcatgc agcgcatgca 300 gatgcatgag ctcggcgcgt cgaacttcgg tatgggtgcg cggacgcctg gggtttatgg 360 tggtcctggt gctgggcaac aagcaggagg cacaccgctc caggcccaag cagcagctca 420 acaggcgcca cagcaacaac aaccagctgc gcagtaccaa gcacatcgac cttcgccgct 480 gcatctcaac gagagagtgc cgcagcccaa gaatgcgaag ctcttcatgc gaaacttcga 540 cggcagcgag gtctacaagg gacttgggag cggtttcgag cgtgggcgct gctgttcatt 600 aagcagatcg agatggcgga gcagtcgtgt ggctacgcct ggcctgagcg ctacaaggtg 660 aacaagttcg gccagcatct acgtggtaaa gctgagctct tcttccagca gcacatcatg 720 cgctggtggg ccacgcagcc gacgctctgg tttgtgatgg atcagatgca cttgtcgttc 780 aagcgggcgc tctcgacgca acaaggaatg aagctctttg gcgcgaagaa ggacccgtcg 840 cgatcgtgga atgagcactt cttgtactta aatgctctca tgatggcaac gaacgcgtca 900 ccaacgctag tgctggagaa gatcgtcaag tacgcggatc cggacttgag gcacgccttg 960 atggccaagt gtgacatcac gcggccggat cctctccaac aagcgcccaa acgaccagct 1020 cgttcgctgg tcgcccaaac gaagcgaacg agctggtcgt ttgggcgcag atgatgaccg 1080 atgaagatcg agcgccaaag catcttggta aggaagtcgt gaacgcagtg gctgagtccc 1140 aagaggaaac gcggcgatgc cacaagtgca agaaggttgg acacctgaag atgaactgcc 1200 cagatcgttc cgctagaagc aacaatgacc agccagtaaa gtttgcactt gacgccggta 1260 acgacttcaa gtccgtggac agcggtgcca gccgacatct tatcaatgat cctgcgctac 1320 tggctaaggt agtgcagtgc tctggtgggg acacctgcat gttaccggat gggcgaacga 1380 tggacgtagc caagaaagga tcggtgattt tgagagctat tgtcgacggg gtcgcggctg 1440 aggtggagat cagtgaggtc tactacgcac cgaaactcgc gcagaacctg atctcatacg 1500 gacggctgat agcgaaggga tgctttctca ccaagcgcaa cggaaagttg gcgctgatga 1560 aaagcaacga agtggtgttc tatgtcgacg taaggcacaa caagcttgtg gctagacttg 1620 aatcggtagt tacgaacaat gctaagatgg agcagctgat catgaacgtg gtggatacga 1680 gtacggacac agcctcgccg gtcgtcgcca cggacacgtt gatgggcttc catgcacgtt 1740 tcggtcactt gtcattggac accattgagc gtatggcaaa tgaccccgca tccggcatca 1800 agatttcgaa tcgtgaccgt aagccctgca tggtttgtgc tgagggtaaa cagactcgag 1860 cgaatcaacc gactaagagc accggatagc actcaccgat cgacaaagtc ggagcagtca 1920 tctccagtga cctgaagggt cccatgacgc cacttgaccg ccaaggtaac cgctacatgg 1980 ttaacttcgt ggaccacaag tcgaactact gcaaggtgtt catggcaaag aagaagaacc 2040 tggctgcaaa gaagttcgag gactttcttg tcgagttcga aaaacggttc gacgttcgcg 2100 tgcatgttct ccgcacggac ggtggaggag agtaccgaaa cgtggatctc ttctgcaaag 2160 aaaacggagt ggctcgtcag gtgtcagaag tcggcaacca agctgcaaac ggcaaggcgg 2220 agcggatgca tcgcacggtt ctcaacatgg ctcggtgtat ggtgttcggt gcaggattgc 2280 cgctgagctt ctggggtgac gcggttgagt acgcgacgta cgtgctgaac cggagctcgt 2340 cacgcgctat cgaggatcgg aagtcgccac tcgaagtgct gactggcgaa gcaccaaacc 2400 ttcgcgacat tgtcatgttt ggatcaaagc gctccgtgtt tcgtgacccc ggaaagcgcg 2460 ccatgaagaa gagggcgtgt gagggcgtcg tcgtcggcaa ggacgaatcg accaagaggt 2520 acaaggtgta cctgccttcg gagaacaagg tgatcttcac gaggcatgtg cagaacatcc 2580 gcgcgttgga ggagaaatcc gatgtgaagc cactaactgt tcaggctccc acgacgacat 2640 cgccaccggc accacgttcc acaccacgaa gatctcgtcg ctcacgccgc aagtcgcgcc 2700 gccgtgctga agccgatgga gacgtggagg ttgacgagcc gaggctgagc gctgagcctg 2760 tggttttgac cgtatccgaa gtcaaggacg tcaatgccca cgctgatgac ccggaaccga 2820 agaactacag gcaggcgcgg aagtgcgcca ggagcgcgct ttgggaggca gctgaaaagg 2880 aagaacttga agctctacag gcgaataaca cgtggaagct ggtcaagttc gagcctggta 2940 gtattcgctt gcatactaag tgggtgtaca agaagaaagg agcaggcacg ggtttgatcg 3000 agcggtacaa gggtcgacta gtcgcctgtg gcaacgagca aaagttcggc gttaacttct 3060 ttctcgtgtt tgcggctgtg attaccatga ctggtgtcaa gtttattttc gtcattgcga 3120 tcatatggaa tgtgcctgcc agacacggcg acgttccaaa cgcgtatgta aaggcgaaaa 3180 cggaggaggg attcgagatt ttgctgttcg tccccgacgg actcgttatc acggaggaag 3240 agctgaagac gctcggagtt gagagcgtgg atgaagttgg cctacttctt ggtcagagcc 3300 tttacggtct gaagcaagca agacgccttt ggcatgagca ccttcatcgc gaactggtca 3360 agcttgggtt catccagtgc attacggacg cgtgcctgta cttcaaggct gacagcggtg 3420 gaatgacggt cgtcggagcg tacgtggatg acctgctggt tactggcacg gacgagaaca 3480 gggtttccca gttcttcgct gacatgtccg ttctggagct caaggatctc ggtgctgcca 3540 gcaattttct tggtatgcgc gtgcagtaca atgagctcag tggttgcagg tttgaccaag 3600 aggctgcaat cgtcgcgatg ctcaccaagt ttgggttgga caaagcaaat tcggtgcgat 3660 cgccgatcgg aggagaagac gcggcagagt cagatttggc agaactactt ccgcacacgg 3720 caaaggagac cacgtcagca ggaccaacgg tgacaaattt ccagtcactg gtggggagct 3780 tgctgtggat tgcgagatgc acgcgtcctg acattatgtt cgctgtacac tgtgcaacgc 3840 gacggactca tgcaccaacg atggcggatt ggaagctggc taaacgcatc gccaggtacc 3900 tgagtggcac ccgatcgcac acgatggata tgtccggcga cgacaatgct aaaaaactac 3960 cactacgatt gcgctcgtat acggacgccg actttgcagc cgacaagagc gaccgcaagt 4020 cggtgagtgc ggcaaccatc caagtaaacg gaatgactgt gtcatggcag tgcaagaagc 4080 agagttctgt ggcactatcg acgaccgagg cggagtacgt cgctgcgaca gtgggtgctc 4140 aggagctact cgggctgaag gagctactgg gtgagctgga tatcgccacc aagttgccta 4200 tgaccatgct gatggacaac caagcggcta tcgtgcaagt tcagagcgaa tcaagctcgg 4260 ccaaggcgaa gcacgtggac gtcaagctca agttcatcca agactgcgcc aagaagagca 4320 tcgtggtgcc agagtatgtg gctagcgcgg aaatgcttgc cgacctgctg acgaaggcgc 4380 taccggcgcc acgggtgaag gagctacggg agaagatcgg actcgtcgac atcgagtgat 4440 tcaggaaccc cgaggctctg gggaggag 4468 // ID Gypsy-1_CMe-LTR repbase; DNA; PLN; 1254 BP. XX AC AP006501; XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Cyanidioschyzon merolae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_CMe_; KW Gypsy-1_CMe-I; Gypsy-1_CMe-LTR. XX OS Cyanidioschyzon merolae OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; OC Cyanidioschyzon. XX RN [1] RP 1-1254 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Cyanidioschyzon merolae genome."; RL Direct Submission to RU (03-MAR-2011). XX DR Genome; AP006501; Positions 418324 417071. XX SQ Sequence 1254 BP; 289 A; 354 C; 346 G; 265 T; 0 other; tgcgcgctct gctcctgcct tgatgttttc attgaacttt tctacatcac aatcctcgat 60 attcgcagcg cagccatacg ggctcacgga tacagacgca ggtttaagac tctggggcgt 120 cttctcgggg tgtgcttttc cgaatccttg gtgctgaaat tccttccgtc atcgtcatga 180 aaacaacata cggcaccttc gagcagggca ccgtaaagca atcgatacca ggatccaatg 240 tatccgcacg ctcgttcact cttttcgttt cctaacggtt gctctggtca aatcacgctt 300 tctgcagcga ttcggtgcgc gtccctcaaa gcaactcatg gacactgcga tttgcgctgc 360 tggtatgacg acgacgacga cgacgacgac gatgatggtg acgacgacac aaaagaactg 420 ccgtcgtccg taagcgactg tatgacgagc tgttgccgag cgttcgcgga gctcgcctcc 480 tcaacacatc gattccgttc gatacgcaag tgcctctttc tttgtggcct tcatcgaaaa 540 ggcctccgac agcagcatca cagttgtcac gggatgcgcc cacagaaacg ctcgacgctt 600 ctggttgcat cggcgagagc cttgggatcg gaatcgagtc atcgcagcga tcgctcacaa 660 aggagcatgc gtcagcgccc aacatggagg cggcgtagac agcgcaaaag tcgtcgacgt 720 atcctcgagc gtcgatttcc atttcagtgc ttgtttcatc atgagcaaca tcgcgtccga 780 cgcaaacgtt atcgacggga tcagcgtgct cgtgcgcatg catcagacag agtcctcgcc 840 gaaggtctta cccagaagaa gcccatgatc gcagggtacg gcaccgggcg cggaaccgga 900 ggacggcatc gaagcgaggc ctctgcaccg gtccggcgcg tgtgcagcgc tcgaagcatg 960 aggcgctgcg acggacctcc aggaacacct gaccacagtc gagtgacacc ggtgcgagct 1020 gcgcgtctac acggtacaca aagaggatct gttgcttgcg gtattgttga gtgcgaatga 1080 aatgcttgaa cgagagccgg catcggcgaa atcgggactt gcacgctgcc atcaacatcg 1140 tttgcatgcc tacaacggcg ctggagcgaa accgtgacca gcgtgtttca tgccggatac 1200 gagaaagagg aaaaagagtc agttggagaa aaatcccgca cagcctggtg ttca 1254 // ID TSE1_LTR repbase; DNA; PLN; 424 BP. XX AC AJ439547; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE1_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TSE1_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-424 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439547; Positions 1 424. XX SQ Sequence 424 BP; 178 A; 51 C; 54 G; 141 T; 0 other; tgacggaaat tatgtagtaa ggttacatct aaaatgttta acatggtctc aaaggattag 60 actagtcatt tgtgatgagt cattatttga tgagtcactt tgtgatgtgc cattatttga 120 tgcgtcataa ttagatgaaa aattattaag aaataaaaat tgtcactcaa taaattaatt 180 gatggaaaat aaaaatcaaa acatatataa acacgataaa atatctggac tgatagtttg 240 gaattattct actcgttata tattatagat attatataaa aaagaaaaca cgacaaatta 300 tagtaataaa taataattta ctttaaatta acaaaaatac cttcagtact aatacaaact 360 cactttatat aatatctgaa atgaataacg atcaagttaa taccaactat tctgcttcag 420 ctca 424 // ID Copia-25_PIT-LTR repbase; DNA; PLN; 491 BP. XX AC AATU01002213; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-25_PIT_; KW Copia-25_PIT-I; Copia-25_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-491 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002213; Positions 90932 91422. XX SQ Sequence 491 BP; 108 A; 139 C; 117 G; 127 T; 0 other; tgtgagttga agtccctaca atacatgcta cggtacaagt cccgatcctg ctctcaatca 60 tacgcacctg tgctgcactc cggcttcgcg actgcagcgg gaccgagtac aaacatactg 120 atgtttgtat gcatcgagac atggttggca gtgagccacg gcacaagtgt tgccgcagtg 180 gacggcatct tattggtgtc tactatagac ttacttgaag atactatgaa ctaatctact 240 ttgcggaacg ctggcgctcg ggtgtgtggc agtgcatcac ttcggctttt gctatctgca 300 gcaagcaact gccccacacc agaacgccac ggtcctgtcg atctttgccc cggcacttac 360 tgtgttaaac gtacttcttc tacctgctct tacttctact gctactatag tgtcagttgc 420 ctcatggcac ctactctaag aagcgataga cagctcgaga gcagcccggt gacgcgccct 480 gggtcacctc a 491 // ID Gypsy-55_PIT-LTR repbase; DNA; PLN; 1092 BP. XX AC AATU01005141; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-55_PIT_; KW Gypsy-55_PIT-I; Gypsy-55_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1092 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005141; Positions 16758 17849. XX SQ Sequence 1092 BP; 263 A; 228 C; 426 G; 175 T; 0 other; tgtaacgagt cggaaagtta cgtggaccac gtgggtgtcg agccagttgg tgatcagtcg 60 cacgaatggc acacgggcgg cacgtcaggt ctgggagacg aggtggagga agctgatatg 120 ggcgcaggag ctgatgtggg cgcggctgct tatgtgggcg cggaggctga cgtgggcgcg 180 gaggcggatg gctgtggccg cgaaagccta agctggaacg gaggacgggg tgaagtggaa 240 cggagtggat gtgggaggaa cggagatagt ggggtgagct gagctgaagt accgtgaggc 300 agccgcggcg tgaggtaccg atgttgagaa gcggcgtgag gcgaacgagc ggggcagctc 360 acttttggat ctgcggcttg gagcacagtc ctgacacgaa ttgcggtgga agacgcaaac 420 ggagcggtag agcgcacgag gtttgacgta acagtcgacc aagtgtgcga acggagtgga 480 aagagcgtac gcggttgacg tagcagtcga ccaagcacgt gaacggagta gaaagagcgt 540 acgaggttgg cgtaatagtc gaccgagtgc gtgaacggag tagagagtac acgaggaccg 600 gcagacgaag gctgtccgag tgtgcgaaac ggagagcgag cgaagcaggg aggcgaacga 660 gcagggccaa cccgcttcgt gagcgactac agcaagcggc gcacgtggtg actgcacggg 720 catcgttgac gaatcgagtg gcatggcgag gagctctacg gggcacctga ggtctgcgtg 780 agtgaggcgg gtagcgttcg gtataggaga gcccgtgtga cgaagtagcg cagcggcgtg 840 aaaggctggt gcttggaaaa gcatttggag gttgagtagg agtacgttag cggagtgagg 900 ctagtgttac gtaaatacaa ataggaacgg gcgtgaggcg aacgttccgg cgcagaacca 960 agtggtttct gtcggccagt agcacgagca cgctcgtaga cgacagacga cttacagggc 1020 gaacccccag cgcagcacta gtggagcaat acgatctgcc ccacggccgg acaagataat 1080 tggcctgttt ca 1092 // ID TKL1_I repbase; DNA; PLN; 4634 BP. XX AC AJ439548; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Kluyveromyces lactis retrotransposon TKL1_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TKL1_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Kluyveromyces lactis OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kluyveromyces. XX RN [1] RP 1-4634 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439548; Positions 394 5027. XX SQ Sequence 4634 BP; 1653 A; 1035 C; 913 G; 1033 T; 0 other; agaaaatgtt taaaagatga agaagaggaa tacattgcca acatccacat gacatgtgtt 60 cccaacacca gctatcccga atggttcaaa aagtggctgg agaataacat ggagttcata 120 gattgtttct tagaagctgt ggccatcata tcagaagaaa atgataaacc aaccttactg 180 cgcgaaattt caacattatc tctacgcgac agagaatcga tcgagaaatt tgcacagaga 240 gcaaccagac cctatcaaag agcagagaga gcaaaaatcc ccgagttaga tgagttatta 300 atacaacaag tcctgcaggc actccctagt gaatgtagtg cgacggaatt gatttttagc 360 acaaaagaag acaaaagctt cgattccctt atgaagcttc tattatctaa acaatggggc 420 aagaaagacg ccaagagacc agaacaaaat aacaacaaac accaagggaa acaatggaat 480 aacaattcta atgaaagaaa gcaatacaac aaccgttata acaacaataa ccaatatgct 540 tcaaataacg aaaatagcaa agaaacggta caacacgttt catcaaagca agcttctgag 600 gaccttaggc ttgacaccac ggactcagaa tactaaaatc accaggaacc ccgccaggga 660 cctgatgatc gactccggag caaccatctc tgtagtccat gataaaagtt tacttcacaa 720 cttcaatcca tcaactgatc aacaactttt tgatactcaa gaaaatcaaa tcagagtaga 780 aggtgagggt aacctaattc tgaaattcaa gaaagacaag gtaaaggtaa gagccatata 840 tacgacagat atgagcatga atgtcatcag tgacgcacac ttgaaaaatg cgggtatatt 900 cagagacaat cgtcaaccgt ttttgatctc taggacagga aagcgcattg ctaaattata 960 tgaactagga agtctctgct ggattccata ctgccacatc tcaaaaccac atgaacaaac 1020 catttcggcg atatcgatca gagatgcacc aaacagattc tctctggcaa acgtccatcg 1080 ctggttcggc catataaatg tcaaatatat tagagaatct attagaaaag gccatatcca 1140 aggtttgaag gaagacgacg tagattggac cggttatagc tctttccaat gccaacaatg 1200 cttggaaagt aaagccaaga gaaataatca ctacgtcaac tccaggatgg actacactaa 1260 agagtactat ccattcgagt atctccacac ggatttgttt gggccaataa gatgcagatc 1320 cagctatccg cctcagtatt tcattgcttt cactgatgag atcacaaggt tcagatggac 1380 atatccactt tactcaaaaa cagctgaaga agtcgtggac aagttcaaag agattgtcat 1440 gcaattaaag tcgcaatttg gcacaagagt cagaactatc cagatggaca gaggtagtga 1500 atttaccaac aatatgacaa gagcatattc aaagaaagag gaatcttgat cagatacacc 1560 accactgctg actctaaagc tcacggtcta gctgaaagac aacattacac tatgttgaac 1620 gactgcagaa ctcatctgca acacgctaat ttaccaccga agttgtggta ccatgcaata 1680 gtgttctcaa acactgtgcg caataccttc gtcaatagac atactggaac ttctccaaga 1740 aataaagcca gtatggcagg cctctcgttc aaagacgtgc ttcctttcgg acaaccagta 1800 attgctcata tacacgatcc acagtcgaaa ttagattctc gtggtattct aggctatgca 1860 ttgcatccat ctaccgaatc gtacgggtat atcatctatg ttccagaaga aaacaagatc 1920 attgacacga gaaactatgt gatactcaag cacccaccag gagaaattgt ttcccaggac 1980 gaaatagagc agatgatcga gcgtatcgaa aacgaagacg cggctaatat ggaaaatgtg 2040 gaatttaatg aagaaccaaa ttatgcagga tccgcacagc ctatgcctta caatacagac 2100 tatattgcag ataatatcaa cgaaaacttt gagaccatca ctcaagaaat ggcagatttt 2160 ggtctcgaat acgggggtga tacattatca ccagttaccc caagtgacgc tggagaccca 2220 ttcactccaa gtgacgctgg agactcattc actccaagtg acgctggaga ccaattcacc 2280 cctgctccca cagacaataa cagaagagag acaacttctt ctccagaacc gattggagaa 2340 aatagagacc caatctctcc acctgactca aaccaggacg gtatgaatga caatataaat 2400 gagtcaccag agccttacag agctaattca accgcaagct ctgctcaacc tgaagaggaa 2460 caccatgctt ccccaaccaa cctagacttt tcgccaataa tcgacggtct agacacgaat 2520 acaaacttac aggaagaacc acagcttccg ccccaacaac ccagcacgga gcaagaacag 2580 ttgccaaccg ctgcagacag tgtccctgac acaactaatc ccaaccccag tgaagatgac 2640 gatactataa acgataagct gaaatccatt cctatcttta atggaaacaa gtacaaaggc 2700 ccgagaacta ccacaaacag tttcgagcct tcgtacgggg gtggaaccta cactgaaaac 2760 tacaatcatc ccacactgga agaagtattt gagtcaattg aacgagatcc cttcaatttg 2820 acatcacaaa aacgaccacg gtcttcaaac acctaccgcg aatcggatca agacagctac 2880 gatagcgggg gtgactttga tgaagaacaa gaacaagagt gctcttcgga caactcacca 2940 gctcgtccac caaacaagag gatccgacgt gtgaactacg ttcatgcaat tgaacacaca 3000 aaagggatca tgcaaatgaa tacttctatc aactactccg aagcaatatc tcgaaacaga 3060 aatgagaacg agaaattagc attccagaat gcatacaaga aggagatagc tcagctaacc 3120 aagatgcaca cctggagcga ggagttgata gatgctacct tgattcccaa acaaagaatt 3180 ataaactcaa tgttcatttt caccactaaa agagacaatt ccaagaaatg cagactagtt 3240 gcacgaggag atcaacagtc attggaaacc tacgatcctg accaaaaggc tactacggta 3300 caccatctcg ctctaatgac cgttctcgcc atggcattag accataatct gaccgccttc 3360 caactcgaca tttcatcggc atatctctat gcagatctca aggaagaact atatatcaga 3420 gcaccacccc acatgaatgc aagaaacaag gtcctgaaac taaataagtc cttgtacggg 3480 ttgaaacaaa gtggagctaa ttggtgcgct ctgatcaaac agtttctcgt tgaggaatgc 3540 ggactgatcg aagacagatt ctggaagtgc gtgttcacag ccaaagagcc attgaaactc 3600 gtcgtgtgtc tatttgtaga cgacatgttg gtagtcggca gaaacgatga acacatcatt 3660 gaattcatct ccaaactgtc caaaaggttt gacaccaaag tcgtaaacga cggtaatcat 3720 agggaagaag atggtgttaa tgaatatgac attctcggag ttgaattaga atacaagaaa 3780 ggagaatata tgaaattcgg aatgcagaaa tcactggaag ataaactccc acatttagga 3840 gtaccgctat actcccatcc tagacagaga aaggttccag gatgtcctgg agactatatt 3900 tcttcaggag aggacctcac tctcgatgat caggattaca aggataaagt gaagcatttg 3960 cagagactag taggacttgc ttcctatgta ggacacaaat tcagatttga aatcctatac 4020 tatgtgaaca tcttggcaca acaccaatta tatcccagtg ccaaggtttt agatcgtgct 4080 gcacaattgt gccagtactt gtgggataca agagacaaaa agttgatatg gaagtattcc 4140 ggaccaaaaa ataacgaaat tactgccatc tcagatgcag ccttcgccgg aaacaatgat 4200 ttcaagtcac aatctggagc gctatatctc tggaatggca agacaattgc tgcaaaatca 4260 tccaagatta aactaacatg tgtctcatcc accgaggcag aaatttactc aataagcaac 4320 tgcgtaacgt acttaagagg aatagaaata ctggtggata agttgctaaa cacaaaatcc 4380 ataataaaac taaagactga cagtcaacca gcaatggcaa taataaagag gaaagaagat 4440 gcagagtttc tcaagaaaca cactggtagt agggcaatga ggataagaga cgagtgcaac 4500 gaacttggac tagtcctaga atatatccca accaaagaga ataccgctga tatcttaacc 4560 aaacccttga gtatgaaact attcaaactt ttaacagagg actggataca atagctttct 4620 cctagtcggg ggtg 4634 // ID Copia-11_PR-I repbase; DNA; PLN; 5026 BP. XX AC AAQX01001726; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PR_; KW Copia-11_PR-LTR; Copia-11_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5026 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001726; Positions 17163 22188. XX CC Positions [1782-2324] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 63..4997 FT /product="Copia-11_PR-I_1p" FT /translation="MTEPLKYTSDGVPKNWNGKDWQQYKWAMMIVFRKKKL FT VDVVDGAVTRDMLTSAETEADFDDKQLTIMQLIGMSLPADIFHQVRDKTTG FT TDMWKALCVIYESRANKTTMAHRAESIRHELEMLKLAPGGDVNKHLSKMFN FT LRTELLSLNYQFDDITMVELMLNSLPHQYEFESLKSGVRYNSADNFITPER FT TRELIRVADSRQKAYQVARGGQRGGPKIGGNGGESSKPKTEEGQQYGNKSK FT DSKKKRVKKCYICDSTEHLRNNCPQKAKGSEGGGANAAEQKRKPRANMTTR FT REDSELGGSSSEDEETNEATSLLDMLLLDAGTPDDVQNDEHGSASDVGNLV FT DGQYDGISDGESDHEEAGSNSRSSWWYFDTAANVHVTGNPLDYVTFTPDSH FT ESQHVQGVTPALASRIAGVGTVELVTNVDGERAVVYLNDVFFVPGATHGLL FT SIGLAAEQGFDFDYYPQVQSFRVREDGRTVIVATPHDATWGFQVTHPMSDD FT LVAPPDSALCNFTAAEGVASMKVWHDRLGHICPQYLKVMVDKDLVRGMMLR FT RRELGACDACHIGKQKQRAHRKKLNRNITKPNQVVYADLLIPSKDNGTKYE FT AVLVIMDGYSRFVTIHLLKSKSSTVVNQHMKEYVLWAERQAGRHKIERVLT FT RKVNLQYRVHQVQTDKGGEFVNTNIESWYKAHGIEHILVGPKSSQLNLCER FT THQSLVEMTKATMHDAGFPRSLWPDALRNAVYIKNRTYNKGTQGIPYEMIF FT AVKPDLHHIRKFGALAYVHVPVNPGRKKHHDNARLGFVLGYAEDVVGCKVY FT FPENRTAKFVSDLRVTEDVVYRDRHGVSLEDEDLESLHFTRAAETPAPSDS FT DSTLDAPTMTSCNDDDTVAATMANETMASMTMDLEGSEACAAPNAAPTRSA FT QRHVELSEMRATTCQASTADLGGITAALPSVETMVRTTVDVSSAQTEAQQV FT SVCHQSEELAVTDVQDENQSLPTGRETSMEMKTDQPLVLQYGDDNETGCSA FT SERCDGSESVVSVCGTAADDAELIVENEEPADEDDDESVVASVCGEIMGKR FT RRDETPSEEIRVELSAAKQEPKRNRTGLREYHKRKRPAYFDDYVMNVAQRT FT TRILDKNGRPIRGSDVRIPKNRRAALRSKYCNFFCEAELEEMAALKARHVL FT EEIIYEDVPEGAKPIKTKWVYDTKTDSLGYVVRFKARLVALGNYQRPGIDF FT HDTFSPVARMSSFRLMVGLAAELDLKLFGGDINTAYLNADLGIKQYVSSIE FT GFPCEVDGHLYVVKKALYGLRQSGREWNTELNQWMMDHGYQRSMTEPCLYF FT RLEGDMTMLVLVYVDDILVATNAEGEKNKLFEDLDKEYGIKDQGLLKHYLG FT VEVEQTDECVVIRQRKYAHEIVEKFGYGGAHPVGNPMEVNARFEPLGENED FT SDTSFPYREAIGMLMYLATSTRPDLAFALSQLCRFVAKPSHKHVGALKRVL FT RYLAGTENYGITYTRQTAESKSMVLEGYCDSDWGNDPETRKSTTGLVFTLA FT GGAVSWMSRRQTIVALSTAEAEYVAACEAAMEAVSESNILQEILPQHDVKL FT RIGIDNQAAHVMATNPTYSRRTRHIELRWHYVREQVEKGVIELHKVCGDVN FT PADTFTKPLDKLRLKRMLALAGIGGVD" XX SQ Sequence 5026 BP; 1353 A; 1056 C; 1506 G; 1111 T; 0 other; gggttctgag cccaagccaa gaggtagcct gcggactttc gactgcgtga aggcgatcca 60 agatgacgga gccattgaag tacacgagcg atggggttcc aaagaactgg aacggaaaag 120 actggcagca gtataagtgg gcgatgatga ttgtcttcag gaagaagaag ctcgtcgacg 180 tcgtggacgg cgccgtgacg agagacatgc tgacgtctgc agagactgaa gcagattttg 240 atgacaagca gttaacgatc atgcaactta ttgggatgtc gttgccagcg gatatttttc 300 atcaagtccg agacaagacc acgggaaccg acatgtggaa ggcgttgtgc gtaatctatg 360 agagcagggc aaataagacg accatggctc atagagcaga aagcattcgg cacgagcttg 420 agatgttgaa gttggcccca ggtggagatg ttaacaagca cttgagtaaa atgttcaact 480 tgagaactga attgttatcg ttgaattatc aatttgatga cattacgatg gtggagttga 540 tgctgaatag tttgcctcat cagtacgagt ttgagagtct gaagagtgga gttcggtaca 600 atagtgcgga caacttcatc acaccggagc gcacccgaga actgattcgc gtcgctgatt 660 cgcgccaaaa ggcctaccag gtagccagag gtggacagcg gggcggacca aagattggtg 720 gcaacggggg agagagcagc aagccgaaga ctgaagaagg acaacagtat ggaaacaaga 780 gcaaggactc gaagaagaag cgagtgaaga agtgctacat ctgtgatagc actgagcacc 840 tgaggaataa ttgcccccag aaagcgaaag gttcggaagg tggtggagct aatgctgctg 900 agcagaagcg gaagccgcgt gcgaacatga caacccggcg ggaggatagc gagttgggag 960 gctcatctag tgaggatgaa gaaacgaacg aagctaccag tcttcttgac atgctgctgc 1020 ttgacgcagg aacgccagac gacgtccaga atgacgaaca tggcagcgcg agcgatgtag 1080 ggaacctcgt tgacggtcaa tatgatggga tcagcgatgg tgaaagtgat cacgaagagg 1140 cagggagtaa ttcgcggagt agttggtggt actttgatac cgcagctaat gttcacgtta 1200 cgggcaaccc attggactat gtgactttca ctccggattc ccatgaatct cagcatgtgc 1260 aaggagtaac cccggcttta gcttctcgaa ttgctggagt aggaactgtg gagctagtta 1320 caaatgtcga tggcgaacgc gctgttgttt atctgaatga tgtgttcttc gtgcctgggg 1380 ctacccacgg gttattgtcg attggtttgg ccgcagagca gggtttcgac tttgactatt 1440 accctcaagt gcaatcgttc agagtgcgcg aagatgggcg aaccgtcatt gttgcaacac 1500 cccatgatgc aacatgggga tttcaagtga cacatccgat gagtgatgat ttggttgcgc 1560 cgccagatag tgcattgtgt aacttcactg ctgcagaggg agtggcatcg atgaaagtat 1620 ggcatgaccg tttgggccat atatgcccgc agtatttgaa agtgatggtt gacaaagatc 1680 ttgttcgtgg catgatgttg cgccggcggg agctgggagc ctgcgatgcc tgtcacattg 1740 gcaagcagaa gcaaagagca caccggaaga agctgaaccg aaacatcacg aagccgaatc 1800 aagtcgtcta tgctgacttg ctgattccga gcaaggacaa cggaaccaag tacgaggcag 1860 tccttgtaat tatggacgga tactcgcggt ttgtcacgat tcacttgctg aagagcaaat 1920 ccagtaccgt tgttaaccag cacatgaagg agtatgtctt gtgggcagag cgtcaagctg 1980 ggagacacaa gattgagcga gtgctgacgc ggaaggtgaa tctgcagtac agagtccatc 2040 aagttcagac ggataaaggt ggtgagttcg tgaatacaaa catcgaatcc tggtataaag 2100 cgcatggaat cgagcacata ctcgtgggtc caaagagttc gcagctaaac ctatgcgagc 2160 gcacccatca gtctctggtt gagatgacga aagcaaccat gcatgatgct ggctttccac 2220 ggagcctctg gccagatgcg ctacggaatg cagtgtacat taagaaccgc acatataaca 2280 agggtacaca aggtattccc tacgaaatga tttttgctgt gaaacctgat ttgcatcata 2340 tccgcaagtt cggcgctctc gcgtacgtcc acgtgccagt caatcctggg cggaagaaac 2400 atcatgataa cgcaagattg ggtttcgttt tgggttatgc agaggatgtg gtaggctgca 2460 aggtctattt ccctgagaat cgaactgcaa agtttgtatc ggatcttcgt gtcacggaag 2520 acgtggtgta ccgagaccgg catggcgtat cgttggaaga cgaagacttg gagtctctgc 2580 acttcacgcg tgccgcggag acgcccgccc cgagtgattc tgactcaacg cttgatgcac 2640 ctaccatgac atcgtgtaat gatgatgaca ctgtcgctgc tactatggcg aacgagacca 2700 tggccagtat gactatggat ctcgagggaa gtgaggcgtg cgcagctcca aacgcagctc 2760 cgactcgctc tgcacaacga catgtcgagc ttagtgaaat gcgcgcgacc acgtgccagg 2820 cgagcacagc agatctaggt ggtatcactg ccgcattgcc aagtgtggag acgatggtac 2880 gcactacagt cgatgtctcg agtgcgcaaa cggaagcgca acaggtgtct gtgtgtcacc 2940 agagtgagga actagccgta actgatgttc aagatgagaa tcagagtcta ccgacaggaa 3000 gagaaacttc gatggagatg aagacagatc agccgctagt gttacaatat ggagacgata 3060 atgagactgg gtgttcggcg tcggaacgat gtgatgggag tgaatcggtt gtgagtgtat 3120 gtggcactgc agctgatgat gctgagctca tcgtggaaaa tgaagaacct gcagatgaag 3180 acgacgatga gtctgtcgtg gcgagcgtgt gtggagaaat aatgggaaag cgtcgacgtg 3240 atgagactcc ttctgaggag attcgcgtgg agctgagtgc ggctaagcag gaaccgaagc 3300 gcaatcggac agggcttcgc gaatatcaca agcgcaagag gcctgcctac ttcgatgact 3360 atgtgatgaa tgtagcgcag cgcacaacac gcatactcga taagaatggc cggccgattc 3420 ggggtagcga tgtgagaatc ccgaagaatc gtcgagcagc tttgcgtagc aagtattgca 3480 acttcttttg tgaagccgaa ctggaagaga tggcagcatt gaaggctcgc catgtcctgg 3540 aggaaattat atacgaggac gttcctgagg gcgcaaagcc gattaagact aagtgggtat 3600 atgataccaa gacggatagt ctaggctatg tggtacgctt taaggcgaga ctcgtagcgc 3660 ttgggaacta tcagcgccca ggaatcgact ttcatgacac gttttcaccc gtggcgcgta 3720 tgtcttcgtt ccgattgatg gttgggctag ctgcagagct ggatctaaaa ctatttgggg 3780 gagatatcaa cacggcgtat ctaaacgcgg atctaggaat caagcagtac gtgagttcga 3840 ttgaaggatt cccgtgcgaa gtcgatggac acctctatgt ggtgaagaaa gcattgtatg 3900 gattgagaca gtcaggacga gaatggaaca cagagctgaa ccagtggatg atggatcatg 3960 gttaccagcg atcaatgact gaaccttgct tgtacttccg tctcgagggt gacatgacta 4020 tgctggtgtt agtctacgta gatgacatct tggtggcgac caacgctgaa ggggagaaga 4080 acaaattgtt cgaggacttg gacaaggaat acggcatcaa ggaccagggc ttgttgaagc 4140 attaccttgg tgtagaggtg gagcaaaccg atgaatgcgt tgtcattcgg caacgtaagt 4200 acgcacacga gattgtggag aagtttgggt acggaggggc tcatccggtt gggaacccga 4260 tggaggtgaa tgctcgcttt gaacccctcg gtgagaacga ggatagcgat actagctttc 4320 cctaccgtga agccatagga atgctgatgt acctggcgac gagtacacgg ccagatcttg 4380 catttgcact gagccaactc tgccgcttcg tggcgaagcc ttctcacaag catgtgggtg 4440 cattgaaacg agtactgcgg tatctcgcag gaacggagaa ctatggaatt acgtatacac 4500 gacagacagc agagtcgaag agtatggtgc tcgagggcta ttgcgatagt gattggggaa 4560 atgatcccga aacacgcaag agtactactg gattagtgtt cactctggct ggtggggcag 4620 tgtcttggat gtcaagacgc cagaccattg tagcgttgtc tacagctgag gccgagtatg 4680 tggctgcatg tgaagctgca atggaggcag tttcggagag taacattttg caggaaattc 4740 ttccgcagca tgatgtgaaa ctacgcattg gaatagacaa tcaggcagca catgtgatgg 4800 caaccaatcc tacttacagt cggcgaactc gtcatattga actacgatgg cactacgtgc 4860 gcgagcaagt tgaaaagggt gttattgaac tgcacaaggt gtgcggtgat gtgaatccgg 4920 cagacacgtt tacgaagccc ctcgacaagt tacgtctcaa gcggatgctg gcacttgctg 4980 gcatcggagg tgtagattag tcgaagctga cacttcgagg gaggcg 5026 // ID PILN2_PT repbase; DNA; PLN; 412 BP. XX AC AB016146; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus thunbergii LINE retrotransposon PILN2_PT, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; LINE; PILN2_PT; KW endonuclease; long interspersed nuclear element. XX OS Pinus thunbergii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-412 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016146; Positions 1 412. XX SQ Sequence 412 BP; 134 A; 71 C; 107 G; 100 T; 0 other; ttggaatgcg agaggtctca atagcagagg taagtagaga tacttacaag atcgcttgaa 60 aaaggagaag ccttggatag tgctcctcta cgaaaacaag gtatcaggag aaaaaataga 120 ggaaatactt agatgaatcc ggcctaagta taaagcagta tcaatatatg caaaagggag 180 tgccggaggt attgccataa tatggaaccc tgcagaggta atggtggact tctagatggg 240 catgtcttgc atcttgtctg ggcgattttg gcacatcgga accagggaat aggttttaat 300 cttggcggta tatggtcctc acactccagg agagaaggaa gccttcctac atagcatagc 360 gaagttgagt attacatact gaaaaactat ggctcatcct cggagacttt aa 412 // ID Gypsy-60_PIT-LTR repbase; DNA; PLN; 260 BP. XX AC AATU01006737; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_PIT_; KW Gypsy-60_PIT-I; Gypsy-60_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-260 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006737; Positions 31643 31902. XX SQ Sequence 260 BP; 65 A; 64 C; 71 G; 60 T; 0 other; tgtagtgggg gtttctcgtt ggcaagcctc cacccactcg cagggcatcg cataaatgcg 60 atgccgagct ggcagttaga ggttagggac gcctgggaca acagactgta ccaggagtta 120 ggaaaccacc atcaggccga cagactgtgc ctaatggagc aatgcattag ggattttact 180 cagaacaact caatagactt tgggtttgtt aggaagcgcc agcttccctc gcagtgtgtt 240 ttatcgctag acccactaca 260 // ID Copia-41_PIT-LTR repbase; DNA; PLN; 239 BP. XX AC AATU01009464; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-41_PIT_; KW Copia-41_PIT-I; Copia-41_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-239 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009464; Positions 4355 4593. XX SQ Sequence 239 BP; 56 A; 66 C; 35 G; 82 T; 0 other; tgtgagtgtt ggtctcctcc acaccacatg tacaccaacc tcgtaaatat tattgatcta 60 gaagctgtat ttaccatcta gaactaggtt tttaccagaa ttctagatgg ttggctgcta 120 ctcagccacg catcacttac tctcttaaat ctcaatctca ctcttctttt actaagttct 180 tcgcaagtgt tcttcccttt tcttccaatt ctgccaacgc cgagtcctat ggctcgaca 239 // ID Copia-8_PSo-LTR repbase; DNA; PLN; 228 BP. XX AC AAQY01000292; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PSo_; KW Copia-8_PSo-I; Copia-8_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-228 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000292; Positions 63592 63365. XX SQ Sequence 228 BP; 66 A; 74 C; 51 G; 37 T; 0 other; tgttggagat cgcaagagct ggcgccacct gcgatgagtg cagtggcgac gataacggcc 60 tgcgacgacc acaacgaccc ctccagctac acaacacgaa actaccgatg catattagcc 120 tagcacagac atcctagcat catccaacct aactcattct gcaatacacc aggtgcgagg 180 caccactaca aggagcaacc cgtgcaggat caacgagtgc tcccttca 228 // ID Gypsy-1_ES-I repbase; DNA; PLN; 8160 BP. XX AC CABU01002760; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_ES_; KW Gypsy-1_ES-LTR; Gypsy-1_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-8160 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002760; Positions 306184 298025. XX CC Positions [5205-5693] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 4485..6392 FT /product="Gypsy-1_ES-I_3p" FT /translation="MQDTSNMLTSWAIALQNYDFTVKHVAGKLNVVPDALS FT RLFGEIESESVSHKPALASICRNVPSDRPYHPPGPRDYEISADSLNDVDIV FT QNDNELFASAVSLFPVLDPAKLRREHYKEFGPYIDYVKKPKTAPLPSSENK FT GTMSNYFLNENVLFRSYLPGYLRKRSSFRDQLVVPTVLRPLVLDSCHDAPA FT SGGHLAFKATYDRLRDRFWWPTMSRDASKHIQHCSSCQHRKTSHRRPLLPV FT GHRPVTRPFQCVAIDLVEYNSVSQGCKYVLSVIDHLTRFLVLIAIRDKKAT FT TIAQALVERVFSVFSPPETLHSDQGTEFENELVKELQAVFGFKKTRTSAYR FT PQGNSVLERVHNTMHGMLAMYANVRFDNWAELLPFVQLAHHTAYNQTLEET FT PHYLKIGRQALLPVDVILGVPSNDSSASRMEYSRRNVDNLQLAYEIARRNL FT KERTDKQADSNDKLSVPHFTPGEQVLVHRPHTVIDGPNPKLISPWHGPFTV FT RSKVSPVIYRVCKTGELAETSVHLGRMKKYYAFQRDSVPDFSELDEMFLGQ FT TLPIPDLDGTVFTVKIGSYVVEGIDKFKRGAGKPSLHNFQYYFLLKDRPAS FT LGCWKHFKEVPQCHEMIRSYRACVLRDNPHAFDHSPRK" FT CDS join(1188..1868,1872..4481) FT /product="Gypsy-1_ES-I_1p" FT /translation="MWDAMCSVLLDSLLPANSVEEEAHNLATFVQGPQESV FT SSYALRFRTVMAQFQAAVGHDGSRTAWNCMTVALWQNGLTPEVRKLQRGYT FT PVKSLKEAIDRARRLEESEPVLTVLATHSVSSATARPTAVFQARPTQTVTF FT KKSPAPRPSTTRRGTPAARDRGSGGGGGQRRPSFDPCTHPTCRSHKTHPIE FT RCWVRIAEEEDRQGRSASKRSRKNRRPKRKDDSSDSEGCPGVVPTILGKKF FT AVAVAISSKGVKRSFDRFASLARSSMSSSARSDRSCSKSTKRLVNKAHASP FT VVEQSHRRLGRSIIAADLDVVDRASLEASRFRKSANKTRADRIVAVPKNVS FT ERKKRKRNSEGIKKRVSWYSSALAREKPSLSLSFSSKRVRAPGHIDGQFLP FT EITIDTASDVTCGSLSFLKQHPLLSFAHLEPIPSPSLTLSAANGAPVKVLG FT FISFVVRLGDVSRRIDALVVPSLGPDQILLDNEAMTRFGAVLDWKNERLTF FT ECSDTSVPAIHRKNSQHGVDPSPSPRVAAIHRNAEEHSVKLRQRYNIRPRH FT AMIVKAFTECIPSVETAVVVEPRILSADELSLDTVPPEFERLIVARTVSTW FT SAIDGSVVVQIANPSSVYLAAHVGLEIGTLSPITIVAQEQLHVHAVASSPK FT TASEIAAAKAELVEPLSKAFTNSTFSKEQQTRVLDLCAKYRPVFLLNRKEL FT GKCKTAQATFPMPPNTKPVNRRPYRTEAVIQTCVKDMLDDDIIEELPSQWG FT SPVTLVARKDGKPRFCVDFRSTVNKHIIRKTWPLANMESNLGSVGNAKFIS FT VADVQSAYWQIPVHPDHVERTAFVTNSGKYCYKRMPFGVCNAPWIFTEMAH FT KTLGHNPELLIYMDDFCVLSATFENHMNSLESMFVALQAAGLTLKPSKISF FT GPKSIEYLGHIISAEGISVGKDRIQAVQNLPTPRCLKDLRSVLGVVNFVRR FT FIPDYAEITNPLVELTRKEYATKSRFVKAWKKSHDASFAHLKRLLTSAPVL FT HFPDFDRKFVVHVDASEHGCGAFLAQPSKADPESLDIIAYYSNRFNHGQRH FT YSASMKECCGVVLAISHWRQYLFGKHFTVITDHQALTHLF" XX SQ Sequence 8160 BP; 1833 A; 2041 C; 2021 G; 2265 T; 0 other; tggtggcgtc agcggcgtta cgtgtgttgg tagagttcct ggtgcgttgg cggcactact 60 ttgtcactac catggggaac cgcaagaaga agaaaaaatc atctgaggag gtccactctc 120 cagaagagtg ggaggacggt gaacaggtca tggatttcga gccggccgtc gacgaacaag 180 ttctggcgtc gcctgccggc ccgccgtcac cgtctccatc gtcgtcgtcg tccccgtcgt 240 cggacgacga ggggcaccgg tctgaccagc catcgggtga tgatgatggg ttggaccagc 300 tgtcgtcgtt gcagttgctc gaggcaactt gcaagaggta aagaattacc tccgcgcgtt 360 gaagcagagg cggacaccgc cggagctctc gccagcgacc atcgcgtggc aacagcgtct 420 cctgacggag tcggtgggaa gctcatcgtc ggtcgcctca gcgtcaccta cgtcgtcgtc 480 tcgtggagcc tcgtctcgtg gagcgggtgc aactgcacat ttagtggtaa gttcaagcgt 540 tccgtttttg gctccgtcgt tgcccgggaa gacaccgttg tcccctggag caccatcgtt 600 cgttccgtcc gcacaggcaa cgagtggatc aaatccctcg ccgagtccgt cgctcactgt 660 gcccgtaaac acgtctactt cggtgtcgtg tacgtctggt agtgcaacca cagatagttc 720 aacatcacag gttgcacctg ctagtgtgca atcgtccatc gtagcgtcac ctgttacttc 780 aacagcacag gttgcaccta cgaatgcgca atcgtccgtc gtagcaccgc ctgttacttc 840 aacgttgcag gtggcgtcta ctgctgtagc aaccgaactc cccgttcgta cgtttctaca 900 agcagctacc gtctccatat ccgcggctga tctccgtagc gttcccaaac tcacaggaga 960 atgtgatcga aattttgaac cattttcgta cggtggttgg gttgaaagct gcagccatca 1020 acccggattc gtcgtttgct gatggagttg cattaaaaca cgttgccctt gtgggaacag 1080 gagaggtgtt gactctgatt cagcagatct tgtctggaca gatagactgt tctaaggcaa 1140 gcacgttcac ggaaccggag gaaaaagggt cgtttcccgc tccgaccatg tgggatgcca 1200 tgtgttccgt gttgcttgat tcacttcttc ccgcaaattc cgttgaggag gaagcacaca 1260 atctcgcaac gttcgtccaa gggccgcagg aatctgtttc ctcgtatgct cttcgtttcc 1320 gtactgtcat ggcacagttc caagctgccg tcgggcatga tggtagtcgt actgcttgga 1380 actgcatgac agtggccttg tggcaaaatg ggttgacgcc ggaagttcgt aaacttcaac 1440 ggggatacac tcccgtaaag tcactcaaag aagccataga ccgagcgcgt cgtctggagg 1500 agtcggaacc cgttttaact gttttggcaa ctcactccgt atcgtctgcc accgctcgcc 1560 ccacggccgt gtttcaggcg aggcctactc aaacggtgac ctttaagaag tcacctgccc 1620 cgcgtccgtc gacaactcgc cgtggaacgc ccgccgctcg tgatcgaggt tcgggtggtg 1680 gggggggtca gcgtcgtccg tcctttgacc cgtgcaccca ccccacctgc cgttcgcata 1740 agacccaccc catcgagcgc tgctgggtgc ggattgcaga ggaggaagat cgtcagggtc 1800 gttctgcgtc caagcggtcc agaaaaaacc gtcgtccgaa gcggaaggac gattcgtcgg 1860 actccgaata ggggtgccca ggtgttgtgc ccacaatcct tgggaagaaa tttgctgttg 1920 ccgtagcaat tagcagtaag ggcgtgaaaa gatcttttga tcgttttgcg tcacttgcgc 1980 gttcgtccat gtcgtctagt gctcggagtg atagatcgtg ttcgaagagt accaaacgac 2040 ttgtaaataa ggcacatgcg tcccctgtcg tagaacaatc acatagaagg ttagggcgtt 2100 ccattatcgc agccgattta gacgtggttg atagagcgtc ccttgaggca tcgcgttttc 2160 gtaagagtgc caacaaaaca agggccgaca ggattgttgc cgtaccgaag aatgtatcgg 2220 agcgtaagaa gaggaagagg aattccgagg gaattaaaaa acgtgtttcg tggtacagct 2280 cagcgctggc gcgggaaaaa ccgtctttgt ctctgtcttt ttcgtccaaa cgcgttcgcg 2340 ctcctggaca tatcgatggc caatttctcc ctgaaatcac cattgatact gcaagtgacg 2400 tcacgtgcgg ttcactttcg tttttgaaac agcacccatt gttatcgttt gctcatttag 2460 agcccatacc gtctccgtcc ctaacactta gtgccgccaa tggagcaccc gtcaaagttt 2520 taggatttat ttcgttcgtt gttcggttgg gagacgtgtc ccgccgaatc gatgcgttgg 2580 tcgtaccatc gctcggtcct gatcaaatac tccttgacaa tgaggcaatg acccggtttg 2640 gggcagtgct tgactggaaa aatgaacgtt tgactttcga gtgtagtgac actagtgtcc 2700 ccgctattca tcgtaagaat tctcaacacg gtgttgatcc gtcgccgtcc ccccgtgttg 2760 cagccattca cagaaatgcg gaagaacact cagtcaaatt acgtcaacgt tataatattc 2820 gccctcgtca tgcgatgatc gtaaaagcat tcactgaatg cataccgtcc gttgaaaccg 2880 ccgtagtagt cgagccgcgt attttgtcgg cagatgaact ttcgttagat actgttccgc 2940 ccgaatttga acgtttaatc gtggctcgta ccgtctcaac atggagtgct attgatggtt 3000 ccgtagtggt ccaaattgcg aatccatcat ctgtgtatct cgccgcacat gttggattgg 3060 agattggaac tttatcgccg attactatcg tagcacagga acagcttcac gtccatgctg 3120 ttgcttcgtc tccgaaaacc gcgagcgaaa ttgctgctgc taaagcagag ctggtagaac 3180 cgctgtcgaa agcgttcaca aattccacgt tctctaagga acaacaaact cgtgttttgg 3240 acctgtgcgc caaatatcgt cccgtttttt tgctgaatcg taaagagctt ggtaaatgca 3300 agactgctca agccacgttt cctatgccgc ctaacacgaa gccggttaac cgtcgtccct 3360 accgcactga agccgttatc caaacgtgcg tcaaggacat gcttgacgat gatatcatcg 3420 aagagctgcc tagtcagtgg ggttcccccg ttactctcgt cgcgcgtaaa gatggtaaac 3480 ctcgtttttg cgtcgatttc cgaagcaccg tcaacaagca catcattcgc aagacctggc 3540 ctctagcgaa catggagtcc aaccttggct ctgtaggcaa cgccaagttc atcagcgttg 3600 cagacgtcca gtcagcgtac tggcagattc ctgttcatcc tgaccacgtc gaaaggacag 3660 cctttgtcac gaactctggc aagtactgtt acaagcggat gccgtttggt gtttgtaatg 3720 ccccgtggat ttttactgag atggcccata aaacattagg ccataatccc gaattgttga 3780 tttacatgga tgatttctgt gtgctttccg caaccttcga gaatcatatg aattccttag 3840 agagcatgtt tgtagctctc caagcagcag gtctgacgtt gaaaccttcg aagatttcgt 3900 ttggccccaa atccatcgag tatttgggac atattatttc ggctgaaggt atttctgtcg 3960 ggaaggatcg tattcaagcc gtccaaaacc ttcctacacc tcgttgcctt aaagatcttc 4020 gctcagtact cggggtggtt aattttgtgc gccggtttat accggattac gcagaaataa 4080 ccaatccgtt ggtggagtta actcgcaaag agtacgccac aaaatcgcgt ttcgtaaaag 4140 cttggaaaaa atcgcacgac gcatcgttcg ctcatcttaa gcggttatta acttcagcgc 4200 ccgttttaca tttcccggac ttcgatcgga aattcgtagt tcatgtggat gcatccgaac 4260 atgggtgtgg cgcgtttctt gcccagccgt ccaaggctga tcctgagtct cttgacataa 4320 ttgcgtatta tagtaatcga ttcaaccatg gacagcgtca ttactctgcg tctatgaaag 4380 agtgttgcgg tgtggttctt gcaatttcgc attggcgaca atacttattt gggaaacact 4440 ttacggtgat cacggatcat caagcgttga ctcatctttt ctaaatgcaa gacaccagca 4500 acatgctcac tagttgggct atcgctcttc aaaattatga ttttactgtc aaacacgtag 4560 cgggaaaatt aaacgtcgta cccgatgcgt tatctcgttt atttggcgaa attgagtccg 4620 agtccgtatc gcacaaaccg gccctggcgt cgatttgtag gaatgtgccg agtgatcgtc 4680 cgtaccatcc acctggccct cgtgactacg aaatttctgc cgattcgttg aacgatgttg 4740 atattgtcca gaatgacaat gaactgttcg ccagtgctgt atcgttattt cctgtgctgg 4800 atcccgctaa attgcgaaga gaacactaca aagagttcgg tccgtatatc gactacgtca 4860 agaaaccaaa aacagcaccg ttgccgtcta gcgaaaataa aggcaccatg agtaattact 4920 tcttgaatga aaacgtgctc ttcaggtcgt atttaccagg gtatcttcgt aaacgcagtt 4980 cgttccgtga tcaacttgtc gttcccaccg ttttgcgtcc gttagttttg gattcttgtc 5040 atgatgctcc tgcgtcaggg ggtcatctag cgttcaaagc cacgtacgat agactcagag 5100 atcgtttttg gtggccgacc atgtctcgag atgcgtccaa acacatccag cattgttcgt 5160 cgtgccaaca ccgaaaaacg tcccacagac gaccgttatt acctgtgggt caccgtcccg 5220 ttacccgtcc gtttcagtgt gtcgcgatcg acctcgttga atataattcc gtatcacagg 5280 gttgcaagta cgtcttgtcg gtcatcgatc acctgacccg ttttctcgtg ttgatcgcta 5340 ttcgtgataa aaaagcaaca acaattgcac aggctctcgt agagcgtgtc ttttccgttt 5400 tctctccccc tgaaacgcta cacagtgatc agggcactga gttcgagaat gagttggtta 5460 aagagttgca ggccgtgttt ggtttcaaga aaactcggac gtccgcgtat cggccgcaag 5520 gtaactctgt attagagcgc gtgcacaaca caatgcatgg catgctcgca atgtatgcaa 5580 acgttcggtt tgataattgg gctgagcttt taccgtttgt gcaactcgcc catcacaccg 5640 cgtacaacca aactcttgag gaaactcctc attatctgaa gatcggtcgc caggcgttgc 5700 ttcccgtgga tgtcattctt ggtgtaccgt ctaatgatag ctctgcttcg cggatggaat 5760 attcacgtcg taacgtggat aacttgcaac tcgcgtatga gatcgctcgt cgtaatttga 5820 aagagcgaac tgacaagcaa gcagactcga acgacaaatt atccgtaccg catttcactc 5880 ctggggaaca agttctcgta catcgtcccc ataccgttat tgatggccct aatcccaagc 5940 tgatcagccc ttggcatggc ccattcaccg ttcgttcaaa agtgtcaccc gtcatatatc 6000 gtgtttgcaa aaccggagaa ctcgcggaaa catcagtaca cttgggtcgt atgaaaaagt 6060 actatgcttt tcaacgtgat tctgtccccg atttttctga attggatgag atgtttttgg 6120 gacaaacact tccaattccc gatttggatg gtaccgtgtt taccgtaaaa attggatcgt 6180 acgtcgtcga ggggatagac aaatttaaac gtggagcagg aaaaccgtct ctccacaact 6240 tccaatatta tttcctcctc aaagaccgtc ctgcgagtct tgggtgttgg aagcacttca 6300 aagaagtacc ccagtgtcat gagatgatcc gttcatatcg agcgtgcgtt cttcgtgata 6360 atccgcacgc ctttgatcat tctcccagga agtagcgtcc tggctgcttc gtatcgtgtc 6420 tcgtgctgtg ttttgcctta ttcgtttcgt gtttcgttta ttttccaagg gctacgtttt 6480 cgtttgtttt attttttata tgtacatata tgttattgtt cgttgtccag cacgatcgtt 6540 tcgtagtgct cgccgtcccc aacgttcctt cgcagtccgg ccgggcattg tcgttgttgg 6600 tggatacgcc cacgttggat gcaacacctc gtggaagtcg gcaggtggag cctagttcgc 6660 gtcgagattc gccctccgcg aaccaagcat ggttgcgtgc cttcgtttcg ttggacatgc 6720 atgctagcgc acgtcatttt taaggcatgg cgttgcccgt tcgttgtgtg atttatttat 6780 tttttatata tttctctgtt tgaataccgt acgaaatagt acctcgtacg agctccgcca 6840 gcgttttcaa ttattcatga ttggaacgtg cgtccgttta tagacaatcg tgcgtggtgt 6900 gaagcgtcca ttgccgttgt gtcgctgtcc ttgagatacg agtgcgtcgt atggggtcag 6960 ttgatacttt atgtgagcga ataggcggga tcggaagttc gtcgtttttc tcgtccactc 7020 cgtcattaac ttggggggtg atatcgtctc acttgcagtt tgggggaatt gcaattgata 7080 atcgacttct ggatccatgc acttttgcat tgtcacacgg ttttgttcat gcccgatttt 7140 gtttagtcgt ttcgtgcggt ggatttttat tccgtgtcgt tcgtccgtac ggtagatcac 7200 atgttgtcta cagcgctgaa gctgattgca gtgacatgtt ccgtacgcct ttcgttaacc 7260 gcacatcgtt tctcgcgtgt cgtacactgc gaaagagtag atgggtgtct tggccgtgca 7320 aaaggaagca caagaggacc agaccttcgt cccactactg cgtcaaatcc atgctacagc 7380 atatcgtttg ctgtactcgt aatcaccatt cgtcgtcgtt cgtctatgca gcgcctctca 7440 ttagcgtaat cgcatgagaa ggtcgtatcg ttagctctcc atgagctgtg cacatatgtt 7500 agttcgttgt tgcagctgca taaagtttga gcaacgtttc ccagcgggtc gacccacgtc 7560 atttgccatt caacacttgt gaactataag ccttgcaagc aatcgttttt cacaggtgca 7620 atgccaaatt atttttcgtt gctggatgtt cgttacgtgc aactacaaaa tagttcacgg 7680 cgttgtctca aggtactact tgtacagttt tattacacta tcggggcaag acgcgcaccg 7740 aagtgatgtt ttttctgtac acccgtcgtt cgttcgtacg gtagatcaca tgttacctac 7800 agcgccgagg cggactgaag tgacatgttc cgtacacctt tcgtcatctg tgtagttatt 7860 cgttcgtcgt acgggaatac ttgccaaaat tcctgaattg ctctcgtgca agctggttgt 7920 gactgcacta tgtacgatcg atgctcggat gagatatttt ggtgacacgt tccaaatttt 7980 atgactacaa aacacagagc attcgttgaa tgatggcagt cgccgtacgt tacggcccaa 8040 gtcatttaac tcgtgttttt catcagtact tcacaatttg atacactctg ggttgtttat 8100 gtcattcttg tatctttcaa tccggattca ggccccgtga ttgaagatag gggggtgctg 8160 // ID NU_CA_LTR repbase; DNA; PLN; 277 BP. XX AC AF119344; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans retrotransposon NU_CA_LTR, long terminal repeat. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW NU_CA_LTR; retrotransposon. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-277 RA Goodwin J.T. and Poulter T.R.; RT "Multiple LTR-retrotransposon families in the asexual yeast RT Candida albicans."; RL Genome Res 10(2), 174-191 (2000). XX DR Genbank; AF119344; Positions 1 277. XX SQ Sequence 277 BP; 109 A; 31 C; 51 G; 86 T; 0 other; tgaggttcct tcttatatcc tttttggcaa gtaaatgtgt cgtgctttga tatattagaa 60 agacaatcca ttaatagatg aaatatatat tgatgatgaa aaaagtattg gttgttcaaa 120 atgaaagatc aatataaaaa ttcggagaga aacgtgatgt ttatagagta aaaaattgag 180 ctgataactt cgcaaccaat tctgaacaag catagtttgc aaatatgaat acatcctaga 240 aaaagtgtaa tctatgagga aatatgcagg atattca 277 // ID Gypsy-11_PSo-LTR repbase; DNA; PLN; 322 BP. XX AC AAQY01000287; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PSo_; KW Gypsy-11_PSo-I; Gypsy-11_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-322 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000287; Positions 92357 92678. XX SQ Sequence 322 BP; 107 A; 69 C; 60 G; 86 T; 0 other; tggtccatag agacttagga ttcctattgg ctgaaagcag catcttttag ccaatgagcg 60 acatgcatag cactggaatt ctgccaacca gccgttggca gcttcccagt ttagaatatt 120 acatttagag gaagtcagaa acataaaaca aaaatagcag ttctcatttt aacccaaaaa 180 acattatttg gatcgtttat ttagattaat ctatactcgg aggcccgagt ataattaact 240 ctaatttaaa ccaagctacg cttcctcgta cacgtgcgca cacgtgtaag ctaaagtagt 300 gagccaaagt aggcccataa ca 322 // ID Gypsy-2-I_PI repbase; DNA; PLN; 6612 BP. XX AC . XX DT 29-APR-2009 (Rel. 14.04, Created) DT 29-APR-2009 (Rel. 14.04, Last updated, Version 1) XX DE An internal portion of the LTR retrotransposon - a consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; Gypsy superfamily; Gypsy-2-I_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6612 RA Bao W. and Jurka J.; RT "Gypsy LTR retrotransposons from Phytophthora infestans."; RL Repbase Reports 9(4), 731-731 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 45..860 FT /product="Gypsy-2-I_PI_1p" FT /translation="MPTIAQLRAEIDRLNQAMADRTKVPSHLPKFTGKRGE FT DVREWLFQIENACRINNIPIEDTSARLPGIAGSAMEKPASGWFLHWSSTTR FT AEEHTWGIFREHVLQHFEASNYQSVLREKLQRLKQTADIETYNGEYSALIF FT RVEGMSVLDQVLYYANGLKPRTRSYVKLENPETLSDAMDLAVKYEVTHFVD FT ESRERHTRQDKRKPSTEHAPSHDKSLKGKTFRGKGRFKAKTSSKRAESRTC FT FHCKKPGHIKTNCFLWKKEQEKQGNGQPRQ*" FT CDS 740..4915 FT /product="Gypsy-2-I_PI_2p" FT /translation="LETSRKSYLFPLQETWPHQDQLLPLEEGAREAGKRAA FT TSVNEGPVVEENVAGSVKFENVSLNVLSENPLVYKSRPLFSVEGEIIVSGA FT TISTQRMLLDCGATTIYVSRQWVEKHRLKATKFIGKNIRVKLGDNQIVETE FT LEVLPLEILVSGLGEAYKCIAVVYAIPDEFDCILGIPFFEDMQPQIDWRGR FT CIEGTQVKTLHWKRTGETSGPIEEGGPVIASGLRRSVEAKGLSAKRPDSCR FT GAALETDVKSAAETVCDATQKESPRVVCEQPGDASAGKGSAVKDNLELSKR FT GGTVREAGDSSSTGGRGTVVENMFTMGVVDEAGVQTKFITRKKLRKFLRIK FT TKSIDEPDFMLVLTNVTIKQVARSLQRQDQPDNVGSAKAQRYLDTDWDSFK FT GNPAYQLLMEYMDNVFRPELPEGLPEKREIEHRIDVEDPNLAMYRQQWRQS FT PEQQREIVRWVVDMVKKKLIRPSISPHAAPTFCVRKPVGWRIVHDYRYLNS FT NTVRQSIPMTRKEDILDAMSGAYWFSTMDLMSAYYQVRMREEDIKFTAFQA FT PNGLWEYLVLPMGVCNAPATMHRLTSKLFRGLENTKSFYDDIYVFTKSQSI FT DDHLKALRKTLNILRDNKLYVKLAKCVFCADEIPCLGDFVGRNGVRMDPDK FT VQTIKDWPVPRTQEELHSFLGLTGYVQRFCPDYAAFTATMFTLLKKKNKRN FT AKIQFNDEQLKNFKELKRRLCNPPVLHLPNFSQSMHLRTDASKFAVGGVLF FT QVVDGVERPIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPPI FT VETDHKSLEGLFTQKMANRRLARWYDILAEYQPTFSYLPGAKNGIADALSR FT RPDLQPDTKYFHDLSVSSFNDTSFSLALSQVSTDSELLKRIKGAYVKDRDV FT QTIRAAIQRRTSTSKSKEKHQHHKLYRYYSEANGLLWYQSPVDDHPRIAVP FT NDVKLRQSIIKESHDTNYSGHPGAERTYLTLARRWYWSKMLKSIQTFIADC FT EPCRRNKPRLTKPPGLLEPLSIPDERWRSISMDFITDLPRTKRDVDSIWVV FT VDRLTKRCHFVPTTKKVTAEGVARLFIDNIWKLHGMPTNIVSDRDRKFVSA FT FWQHVFKSIGTSLSMTVAHRAQGDGQTERMNRTLEEYLRCFVSPRQDDWDI FT HLANAEFAINSTVNSSTKLAPFEADLGYIPLNPLQLAAEQLDTVAKSRRGA FT EFHERQAAILFRCRETLAQTQERMRDVYDKNRQEQVFEVGDRVYLSTKHLD FT PKHTGLPASTKFGPKWIGPYSVVRKIHNHAYELNIQAGNKLHPVFNTGSLK FT PYNESTRLSRPNEVVLADGSIGQIVKRLVKKRTHKRRTQFLVEWVGEEKQT FT WEPVENLSQVPDLIVEFETARRKKRKRR*" FT CDS 6447..4987 FT /product="Gypsy-2-I_PI_3p" FT /translation="MAVPPASAAAAATSSPSAAPSPRSPTPRAPAAVPAVP FT AAMVDAPAGAVTPPSPVRAPVVPSSPVRASVAPSSPVRAPVASSSPVRAPV FT APSPNDAAAEAPGSSLMPPRSPSSPVGSSLAAPHDASASSPPTVLQQLIYE FT ITIEGLCGDDVDGDVAADDAGDDSVAAEDVPLQEVGLFNDEDEEDTQRTKR FT ARLRRGDETSDWHPFPLPKAPERHPTTNHRNHYNPDAPWDYANSAGITRLL FT DVEGESPHRCYLVQWKGRPLQMSWVWMELLDKESTRYMMQNVDEWKASGSE FT ITFMGWYDVRASASEAGTCFMDALRCALYHLGRPNLVTMEMWDEYEKTRPE FT AIAFGVSREDVTEFWKTLQRQSVPLDYGIMLPNILHESIGSVATLNHFFEA FT LVPGTYLVSAGQDDIGHCFVVVKTGPNARLVVLDGYSADHDPPMEVSPLSN FT YLWIESVKWISRVQLQLGYVCRHGKRTSKTARNRKRRLMQQ*" XX SQ Sequence 6612 BP; 1778 A; 1707 C; 1803 G; 1324 T; 0 other; ctggtagcac ttgttggtcc cagcaacctg accagaagga gcccatgcca acaatcgccc 60 agctacgcgc cgagatcgat cggctgaacc aagcgatggc cgaccgcacg aaagtgccga 120 gccatctgcc caagttcacg ggcaagaggg gggaagacgt ccgcgaatgg ctgttccaga 180 tcgagaacgc ctgccgcatc aacaacattc caattgaaga cacgagcgcg cgtcttcctg 240 gaatcgccgg atcggcaatg gaaaagccgg catccggatg gtttctgcac tggtcgtcga 300 caactcgagc ggaggagcac acgtggggga ttttccgtga gcatgtgctc caacacttcg 360 aagcgtcgaa ttaccagtct gtcctgcgcg agaagcttca acgcctcaag cagacagcgg 420 acatcgagac ctacaatggc gagtattcag ccttgatctt cagagttgaa ggaatgagcg 480 tgcttgacca agtactatac tacgcgaacg gtctcaagcc gcgcacgcgt agctatgtca 540 agctcgagaa cccagagacc ctgagtgacg caatggacct tgcggtcaag tatgaggtga 600 cacacttcgt cgacgagtcg cgcgaacgtc acactcgcca agacaagcgg aagccgtcca 660 ctgagcacgc gccgagtcat gacaagtcgc tcaagggaaa aacgtttcgt ggtaaagggc 720 gtttcaaggc gaagactagc tcgaaacgag ccgaaagtcg tacctgtttc cactgcaaga 780 aacctggcca catcaagacc aactgcttcc tttggaagaa ggagcaagag aagcagggaa 840 acgggcagcc acgtcagtga atgagggtcc tgtcgtggaa gagaacgtag ccggatcagt 900 taagtttgag aatgtcagcc ttaacgttct gagcgaaaac cctctcgtct acaagtcgcg 960 tccactgttc tccgtagagg gggaaatcat cgttagtggc gcgaccattt cgacccaaag 1020 gatgctgttg gactgtggag caaccacaat ctacgtgtcc agacagtggg tcgagaaaca 1080 tcgactcaag gccacgaagt tcattggtaa gaacattcgt gtgaaacttg gagacaacca 1140 gattgtcgag acggaactgg aggtacttcc cctcgaaatc ctggtgtctg ggttgggcga 1200 ggcatacaag tgtatcgctg tcgtctacgc catacccgac gaattcgact gcatccttgg 1260 aatcccattc ttcgaggata tgcagccgca gatcgactgg agaggtcgat gtatcgaagg 1320 aacgcaagtg aagactctgc attggaagcg aacaggggaa accagtggac cgatcgagga 1380 aggcggaccg gtgattgcct ccgggcttcg gagatctgtc gaggcgaaag gcctatcggc 1440 gaaaagaccc gattcctgtc gaggtgccgc gctggaaacg gatgtgaagt ccgcggctga 1500 aactgtttgc gacgcaacgc agaaagagag cccaagagtt gtttgcgaac aaccaggaga 1560 cgcgtcagcc ggcaagggtt cggcggtgaa ggacaacttg gaattgtcga aacgcggcgg 1620 tactgtacga gaggctggag atagcagcag tactgggggc agaggcactg tcgtggaaaa 1680 tatgttcacg atgggtgtcg ttgacgaggc tggtgtccag acgaagttca tcactcgcaa 1740 gaaactacga aagttcctga gaatcaagac caagtcgatc gatgaacctg actttatgtt 1800 ggttctgacg aacgtgacga tcaagcaagt tgctcgctca ctgcaacggc aagatcaacc 1860 cgacaacgtc ggaagtgcga aagcacaacg gtatctggat acggactggg atagcttcaa 1920 ggggaatccc gcgtaccagt tactcatgga gtacatggac aatgtgttcc gtcctgagct 1980 cccagaaggt ttacccgaga aacgcgagat tgagcatagg attgacgtgg aggatccgaa 2040 tcttgcaatg tatcggcaac aatggcgtca atcgccagag cagcaacgcg agattgtgcg 2100 ttgggttgta gacatggtga agaagaagct catccgtcca agcatcagtc cacatgctgc 2160 tccaaccttc tgtgtacgaa aaccagttgg ctggaggatt gtacacgact accggtactt 2220 gaactccaac actgtacgtc aaagtatccc aatgacgagg aaggaggaca ttcttgacgc 2280 gatgtccgga gcgtactggt tttccactat ggatttgatg tccgcgtact atcaagtacg 2340 tatgcgtgaa gaggatatca agttcacagc atttcaagcg ccaaatggac tctgggagta 2400 tcttgttctg cccatgggag tctgtaatgc gccagcgacg atgcatcgtt taacgtcaaa 2460 gctgttccga ggtttggaaa acaccaaatc gttttatgat gacatctacg ttttcacgaa 2520 gtctcagagc atcgacgacc acttgaaggc gttgcgcaag acattaaata tcctgcgtga 2580 caacaagctg tacgtcaagc ttgccaagtg tgtcttctgt gccgacgaga ttccgtgtct 2640 cggggacttc gtaggacgca acggtgtacg gatggatccg gacaaggtac aaaccatcaa 2700 ggactggcca gtaccacgaa cacaagagga acttcacagc ttccttgggt tgactggtta 2760 cgtccaacga ttttgtccag actacgcagc atttactgca acaatgttca ctctcttgaa 2820 gaagaagaac aagaggaacg cgaagatcca attcaatgat gagcagttga agaatttcaa 2880 ggagctgaag aggcgactgt gtaatcctcc agtgttgcac ctccctaact tcagccagtc 2940 catgcatctg cgcactgatg caagcaaatt cgctgttggt ggagtattat tccaagtcgt 3000 ggacggagtt gagcgaccca ttgcgtatac cagtcgaaag atgaaatccg cggagctcaa 3060 ctatccaaca cagcagcagg agctacttgc tatcgtacac gcgctagcag cttttcgaat 3120 ttactgcttg gacaaaccac cgatcgtcga gacggatcac aaaagtctcg aagggttgtt 3180 cacacagaag atggcgaacc gccgattggc taggtggtac gacattctag ctgagtacca 3240 acccacgttc tcgtatcttc caggtgcgaa gaacggtatc gcggatgcat tgagtcgtag 3300 acctgacttg cagccagata cgaagtattt ccatgacctg agtgtgtcca gcttcaacga 3360 cacttccttc agtcttgctc ttagtcaagt gtctacagat tcagagctgc tgaagaggat 3420 caagggtgct tacgtcaaag atcgagatgt ccagacaatc cgggcagcaa tccagcgacg 3480 tacaagcacc tcaaagtcga aggaaaaaca ccagcaccac aagctatacc gatactattc 3540 ggaggcaaac ggcttgctgt ggtaccagtc tccggtggat gaccatcctc gaatcgctgt 3600 tcccaacgat gtgaagttga gacaatcgat aatcaaggag agtcatgaca ccaactacag 3660 tggccatcct ggtgccgagc gaacgtactt gacgttagca cgacgctggt actggtccaa 3720 gatgctcaag tcgatccaaa cgttcattgc tgactgcgaa ccatgtcgac gaaacaagcc 3780 aaggctgaca aagcctcctg gcttactcga accattgagt attcccgatg agcgctggag 3840 atcgatctcc atggacttca taacggattt gcctagaacg aagcgtgacg ttgattcgat 3900 ttgggtcgtc gtcgatcgac tgaccaagag atgccacttt gtgccgacaa cgaagaaggt 3960 aacagccgaa ggcgttgccc gtctcttcat cgacaacatt tggaaacttc acggtatgcc 4020 gacgaatatt gtatccgacc gagatagaaa attcgtgtct gcgttttggc aacacgtctt 4080 caagtctatc ggcacgtcac tcagcatgac agtagcacac cgggcccaag gcgacggaca 4140 aactgagcga atgaatcgaa cgctcgaaga gtatcttcga tgcttcgtca gtccacgtca 4200 agacgactgg gacattcact tagcgaacgc tgagtttgct atcaactcaa cggtgaactc 4260 cagtactaag ctcgcaccgt tcgaggcgga tctagggtat attccgctga atccgctaca 4320 gcttgcagcg gagcagctcg atacggttgc aaagagtcgt cgaggcgctg agtttcacga 4380 gcgacaagca gctattcttt ttcgctgccg tgaaacactt gctcaaacgc aagagcgaat 4440 gcgtgatgtt tacgacaaga accgacaaga acaagtcttt gaggttggcg accgtgtgta 4500 cttgagcacc aaacacttgg accccaagca cactggtctg ccagcatcca ctaagttcgg 4560 tccgaagtgg attggacctt actctgttgt gcggaagata cacaaccatg cttacgaact 4620 taacattcaa gctggcaaca agcttcaccc agtattcaat acgggttcgc tgaaaccgta 4680 caacgagtcg acacgcttgt cgcgacccaa cgaggttgta ctggctgatg gaagtatcgg 4740 ccagatcgtc aaacgcttgg tgaagaagag gacacacaag cgacggaccc aattccttgt 4800 ggagtgggtg ggagaagaga agcagacctg ggaaccggtt gaaaacttgt cacaagtccc 4860 agatctaatc gtagagtttg agactgcaag gcgcaagaaa cgaaagagaa gatgaagtaa 4920 aatcaactta agggggggct caaagaccta catgtattcc cgtactacat cccctccaag 4980 ttgaagctac tgctgcatca agcgtctctt ccggttacgc gccgtcttcg aagtgcgttt 5040 gccgtggcga cacacgtacc caagttgaag ctgaacacga ctaatccact ttacactctc 5100 aatccaaagg tagttcgaga gaggagacac ttccatcggt ggatcgtggt cagccgagta 5160 cccatcaagc acgaccaggc gagcattggg accagtcttc accacgacga aacagtgacc 5220 gatgtcatcc tggcccgcgc tcaccaagta cgtacccgga accaaggctt caaagaagtg 5280 gttcagagtc gcaacactcc cgatggattc atgaagaata ttgggaagca tgatgccgta 5340 gtccaacgga acactttggc gctgaagcgt tttccagaac tccgtgacgt cttcgcgaga 5400 tacgccaaac gcaatcgcct cgggacgagt tttttcatac tcatcccaca tctccatggt 5460 aaccagattg ggccgaccaa gatggtacag cgcgcagcgg agcgcatcca tgaaacacgt 5520 accagcttcg gaagcactag cacgaacgtc gtaccatccc atgaatgtta tttcagaacc 5580 cgaagccttc cactcgtcga cattttgcat catgtaccgc gtcgattcct tgtccagcaa 5640 ctccatccag acccagctca tctgcagcgg acgacccttc cactgaacaa gatagcagcg 5700 gtgcggagat tccccttcga cgtcaagcaa gcgtgtaatt ccagccgagt tcgcataatc 5760 ccaaggagca tccggattat agtggttgcg atggttcgta gttggatgtc tctccggagc 5820 tttcggaagc ggaaagggat gccagtccga cgtctcatcg ccacgacgaa gccgagcgcg 5880 cttcgtccgt tgggtgtcct cctcatcttc gtcgttaaac aatcccacct cttgaagagg 5940 aacatcctca gctgcaacgc tatcatcacc agcatcatca gccgcaacat caccatcaac 6000 gtcatctcca cacaaccctt cgatcgtgat ctcgtagatg agttgctgga gcacggtggg 6060 cggcgacgac gcagaggcat cgtgaggcgc agccaaagag gagccaacag gagacgaagg 6120 cgaacgggga ggcatgagac ttgagccagg agcttcagca gccgcgtcgt ttggggatgg 6180 agcaacagga gcccgtacag gcgacgatga agcaacagga gcccgtacag gcgacgaggg 6240 agcaacagaa gcccgtacag gcgacgaggg aacaacggga gcccgtacag gtgacggtgg 6300 agttacagca ccagcaggag catcgaccat ggcagccgga acagcaggga ctgcagcagg 6360 agcacgcggc gtcggcgagc gaggcgaggg agcggcggaa ggcgagctag tggcagcagc 6420 agcagcagac gcaggaggca cagccatccc ccaggacgga cctatccaag ccccaagtaa 6480 acaggcccgc acaaggcaag cgtgggtaaa cacggggtcg gactaatccg tcagggaacg 6540 gcacctctgg ccttcagcgc aatttcggga atgacaagac tgaggggacg cgcacgccag 6600 agggagggtg ag 6612 // ID CALTR1 repbase; DNA; PLN; 508 BP. XX AC AF069450; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE Candida albicans retrotransposon long terminal repeat zeta, DE complete sequence. XX KW LTR Retrotransposon; Transposable Element; CALTR1; ZETA. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-508 RA Goodwin J.T. and Poulter T.R.; RT "Multiple LTR-retrotransposon families in the asexual yeast RT Candida albicans."; RL Genome Res 10(2), 174-191 (2000). XX RN [2] RP 1-508 RA Goodwin J.T.; RT "CALTR1."; RL Direct Submission to Genbank (31-MAY-1998)Department of RL Biochemistry, University of Otago, Cumberland Street, Dunedin, RL New Zealand. XX DR GenBank; AF069450; Positions 1 508. XX SQ Sequence 508 BP; 185 A; 63 C; 89 G; 171 T; 0 other; tgttgtcata tagctaatgc taattcttga ttagtgtgga aagcctaata aggttatatt 60 gtgcacaggt taactacctt aatatagtta ttgttaatac agttattgct gttgactact 120 attgttattg ttaaattaaa gtgttaggtt gagttaattg attagtgaaa accaactaac 180 taccgtatta aattagtgta ttaagattga ttcctattaa ggataaaaca gagagtgtgt 240 tagaaagaga aagggtggat tataaatatg tgtaaaatcc cctttagaga ctaatcacta 300 gaaatctatt gatggtttca tatatagaga ttaacgatta tatttataat ataagttggt 360 agttgctagt atatttgaaa gcactacagt atagtatgtc agaatcagat catttaaact 420 ctactaataa tacaggaaac actttcatta gtctagatca agccagtaca ataatggcag 480 atcaaactca aggagctaac ccacaaca 508 // ID CALTR2 repbase; DNA; PLN; 531 BP. XX AC AF192278; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE Candida albicans retrotransposon LTR kahu, complete sequence. XX KW LTR Retrotransposon; Transposable Element; CALTR2; KAHU. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-531 RA Goodwin J.T. and Poulter T.R.; RT "Multiple LTR-retrotransposon families in the asexual yeast RT Candida albicans."; RL Genome Res 10(2), 174-191 (2000). XX RN [2] RP 1-531 RA Goodwin J.T.; RT "CALTR2."; RL Direct Submission to Genbank (04-OCT-1999)Department of RL Biochemistry, University of Otago, Cumberland Street, Dunedin, RL New Zealand. XX DR GenBank; AF192278; Positions 1 531. XX SQ Sequence 531 BP; 178 A; 83 C; 101 G; 169 T; 0 other; tgttgatatg gtaatgttca gttcgtaaga acacgacaaa tggaagttgc cagaaagatc 60 tagatgaata aagtggtagt gcagaaatgc acaaaatatg aattactgtt aacaaatgac 120 tgcgttaagc tactgtaaag tcattttact gtgaaagtcc aaagtgtcca tatgaaagtc 180 acatatgtgg tagaatatgc tagaagaatc atatactggg gaatgatcaa gagtggctgt 240 gtttcacggt tatactcgag tatatttgcc accgatgact ttatatggtg taaatctcac 300 tgactataaa cgtacaacct agttgtaaat gtactgtatt aaagtttact aaccgactat 360 atatagaggg cctacttcct tgaagttggc attagtttag gatttagata actaagttta 420 atatactgat taactgttct atataagatt catcatgtct actcaagatt ctactgcaaa 480 ttccacttct ggattatctc aaactgctga tcagaatgcg tcatttcaac a 531 // ID Copia-1_ES-I repbase; DNA; PLN; 6667 BP. XX AC CABU01000050; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_ES_; KW Copia-1_ES-LTR; Copia-1_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-6667 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000050; Positions 5273 11939. XX CC Positions [3329-3868] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS join(89..4945,4949..6367) FT /product="Copia-1_ES-I_1p" FT /translation="MASRREDESRPAAEARQAAEDARIEELVNERVAARMK FT QLMEEKLAKKMAEMEVRHRAEQQRGGNEEQEAAHQQDPGRPTPNPSADELA FT DAIATAMAGRLQTSGDIGAVSHPATLRMTESRRIEPWDGVFKSGDSRQQKL FT LIFRSSMVARFAQEDVHEVVMSNQDIPVGRQGISMTDLKTEYGEQKVAKAI FT VAWNVLITSISYMPILSEIVSDGSPSGGWRIFLKYYEPQAKAEKKRLLKEY FT HGFAMHANEHPQEYFGRFSILRSRLASHGTVYPDNEANDHLVSALSSDYKI FT EKKLLDRTPDLTFEQIEDSVKEAHTDLVRAREEEQKSGVGHAFVASGAPRG FT DGRVPNGSSGNGGGQDGKGDGRSRSDETRGDRRCHFHPWSNHTNAECYQQQ FT REKERKQRQQQRRQQSSQQQQQQPQQPQQQHPQQSQQQHPQQPQQQQYYHP FT RPQQQQQQQQQQQGGRGGGGWRGGPQHGPHGGRGAQQRYGNSVPPRPQQQQ FT WRPSHGHANVMHHEHGAPPYGGPANSSEYGGWEQPQPQYQQPPPDYTQQQQ FT PYYPPPTPYYEQQQPPTQPPPPPTFQQQQHSTHAPPHSSPPGAAAPAPGSL FT HFLMARFVSAGEIVPSGVVASTERENGNGFALSAQNSLSHFGREKFWADSG FT ATNTFVSSSHHMFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQS FT GEHDFCVQMSDVYVVPGITFNLFSLHHTQRRQRIVLDETGVHLFDGRLSFA FT YSDVGCSLWATRLPQNYTGSAVTYSPDAPPRVSAQASPPGVGTGLVAANPP FT FPQSAGAGATSSASASTGFQSVAAVGVVPASSGFQSVATAGVVPSTPGVQP FT TGSDGVVPSTPSVPSTTSGVVLPICAFPSVEVDPIPTTIPDFQPVITAAVE FT SSSIVPPPAVELTDYREIEINPLVSQDELPIMDMSMFLDVGLMDGKDKVPP FT GDFFPDAHQFSASAEPPPLAFTVQHDDLEVLRGFLSECNEQQAVAPPSLSH FT ALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMSETAKQQGVRLVG FT ELQPCVGCVEAKGRRAPVPRRGTRAAVPFGKVHIDLTGPFTEAMDGSRYLI FT MFVDSASRWQRAYGMRAKSDTLKYVKRFLADMNGMGTPGCFRMDNGGEFTG FT AAFIEFCDAAGIRREYTAPNTPKQNAVAESAIWRAMKGGHAARRHILSMAH FT VDLASVPNIGANGQRLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKP FT PLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGR FT LALTNNVVWVNRRAGAPAPVPAIGGGSSVTAAPSPAAAVPAADAAPPPPPR FT TWTYYPPAPATTAAPPPPPSIFTGSSAPSPISVAPSSAPPSTAATPPRSPP FT GLPPPPPKPASAAVPAPPHPPLSKRAVKELGREDTRVHGRTRGDGVRFMDE FT QQKPPSPPSGGTALHHRLELLDMMDKDTLISSLATREAVDQGRRDLPPPPQ FT PDPNPGGRGSGGAVGAGGPVDSGGGGRPQMFATMFATREDVDAALRAERPP FT DKMPDLPHCMASDLREPKTFNEAMRSQHSELWNDAIGREFFGLLDAGTFSP FT VQPVENAINAKWVFNCKADEYGWPTKFKARLVARGDMQRASIDFGELFAPT FT VSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSG FT LIVKLCKSLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRVI FT MIIVVHVDDIFAVGQKERCDKFGRDLNEMVPVKNLGELRWYSACFYERDVE FT RGLLRISQQRFAEELAAEYGIEWGRSVPLLVSVKLTDFDENEACADVPFRE FT LVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWM FT GITFERGVVTGISMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQ FT KCVTLSTTEAEYVAIADVLKEVLFLRQVWRSMLPDAGMPCIPVFEDNQGAI FT QIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAIS FT KESFALHRDFVMNLQ" XX SQ Sequence 6667 BP; 1403 A; 1824 C; 2058 G; 1382 T; 0 other; cgctagcggt atgacacgtc gtctacgaga ttcgcggtcg agcttggttt aggagcatcg 60 ccttgcggcg atcgacagca gggtcaagat ggcctccagg cgcgaagatg aatcccgccc 120 agcagcggaa gcccgccaag cagcggagga cgccaggatc gaagaactgg tcaacgagcg 180 agtagcagct cggatgaagc agctgatgga ggagaaactg gccaagaaga tggccgagat 240 ggaggtgcgg catcgagccg agcagcagcg gggaggaaat gaggaacaag aggcagcaca 300 ccagcaagat cctgggcgcc caacacccaa cccctccgca gacgagctgg ccgacgcgat 360 tgcgactgcc atggccggtc gcctccaaac ctcaggggat atcggtgcag tgtctcaccc 420 cgcaactctt cgtatgactg agagtagaag aattgagcct tgggatggtg tgtttaagtc 480 gggggacagt aggcagcaga agcttttgat ttttcgatcg agcatggtag cacgctttgc 540 gcaggaggat gttcacgaag tagtgatgag caaccaagac atcccagtag ggaggcaggg 600 gatcagtatg actgacctga agactgagta tggcgaacaa aaggtagcca aggctatagt 660 ggcatggaat gtgctaatca cgtcaatctc gtacatgccg attctgtcgg aaatcgtgtc 720 ggacgggagc ccgagtggtg gctggaggat tttcctcaaa tattacgagc cacaagcgaa 780 agcggagaag aaaagacttt tgaaagagta ccatggcttc gcaatgcatg caaacgaaca 840 tccacaagag tacttcggta ggttctctat tttgcggagt agactagcgt cgcacgggac 900 agtgtatcct gacaacgaag caaacgacca cctagtgtct gcactctcgt ccgactacaa 960 gatagagaag aaacttttgg accgcacccc tgatttgact tttgaacaga ttgaggattc 1020 cgtgaaggag gcccacacgg acctggtgcg cgcacgggag gaggagcaaa agagtggcgt 1080 ggggcacgcc ttcgtcgctt ccggtgcgcc ccggggcgac ggacgtgtcc caaatgggtc 1140 gagtgggaac ggcggcggac aggacggcaa aggcgacggt cggagcagga gcgacgagac 1200 cagaggagac aggcgctgtc attttcatcc gtggtcaaac cacaccaacg cggagtgcta 1260 ccaacagcag cgggaaaagg agagaaagca gcggcagcag cagcggcggc agcagtcatc 1320 acagcagcaa caacaacagc cgcagcagcc tcaacagcag catccgcagc agtctcaaca 1380 gcagcatccg cagcagcctc agcaacagca gtactaccat cctcgtcccc aacagcagca 1440 gcagcagcag cagcagcaac aaggcggccg cggtgggggg ggctggcgtg gtggacccca 1500 gcacggacct catggcggac gcggagcgca gcaaaggtat ggaaactctg tcccccctcg 1560 cccgcagcag cagcaatggc gaccctcgca cgggcatgca aacgtgatgc accacgaaca 1620 cggtgcaccg ccctacgggg ggcccgcaaa tagtagcgag tatgggggtt gggagcagcc 1680 gcagccacag taccagcagc ctccgcctga ctacacccag cagcagcagc cgtactaccc 1740 gccaccgacg ccttactacg agcagcaaca gccgccgaca cagcctccgc ctccgccgac 1800 gttccagcag cagcagcact cgactcatgc cccgccccac tcctctcctc ccggagcagc 1860 agcaccggcc ccgggctccc tccacttctt gatggcacgt ttcgtgtctg caggcgagat 1920 tgttccgagt ggtgttgtag cgagtaccga gcgtgagaat ggtaatggat ttgctttgtc 1980 tgcgcagaac tcgctttccc attttggtag agagaagttt tgggccgaca gcggtgccac 2040 gaacaccttt gttagcagta gccaccacat gttcgatttg aggccagtgc cgactggtaa 2100 agagtacata caggttggaa acggtgctta tttgcgcgtg cagtgtgtgg ggaaggtcaa 2160 catggccttt cacatgcaag accagtcagg agagcatgat ttttgcgtgc agatgtcgga 2220 cgtgtacgtt gtgcctggaa tcaccttcaa tcttttttcg ttgcaccaca cgcagcgtag 2280 gcagcgtatc gttctagacg agaccggcgt ccacctattc gatggtaggc tttcatttgc 2340 atactctgac gtaggatgct cgctctgggc tactcgattg ccccagaatt atactggtag 2400 cgctgtgacc tacagccccg atgccccccc ccgtgtttct gcccaagcgt ccccgcctgg 2460 cgttggcaca ggccttgttg cggcaaaccc ccctttccca cagagtgcag gagcgggcgc 2520 gacttcgagt gcgagtgcga gtaccggctt ccagtccgtc gctgcggtcg gcgttgtacc 2580 tgcgagttct ggcttccagt ccgtcgcaac ggccggcgtt gtaccttcga ctcctggtgt 2640 ccagcccacc ggctccgacg gtgtagtacc ttcgactccc agcgtcccct ccaccacttc 2700 cggtgtagtg ctgccgattt gtgcttttcc gtctgtcgaa gtagacccaa tccccacgac 2760 gatccctgat tttcagcctg tgattactgc tgccgtagaa tcgtcttcga ttgtgcctcc 2820 ccctgccgta gagctgacag actatcgcga gatcgagatc aacccccttg tctctcagga 2880 cgaattaccg atcatggaca tgagcatgtt cctagatgtt gggttgatgg atggcaaaga 2940 caaggtcccc ccgggtgatt tttttccgga tgcgcatcaa ttctctgcgt ctgcggagcc 3000 ccctcccttg gctttcactg tgcagcatga tgatttggag gtgttgagag gttttctttc 3060 cgagtgcaat gagcagcagg ccgtagcccc tccgtctctt tcccacgcgt tggcgattat 3120 cgcccccggt gcttccccct tttcggtagg aaaatccacg cccaccatcg atattaatct 3180 gttccacgct tccaccggcc acgtgaacga atttttgatg agtgagactg ccaagcagca 3240 gggtgttcgg ctggtcgggg agctgcagcc atgtgtgggc tgtgtggagg cgaagggcag 3300 gagggccccg gtgccgcggc gtgggacacg cgctgcggtg ccgttcggca aggtccacat 3360 cgatctcacg ggcccgttca ccgaggcgat ggacggctcc cggtacctga tcatgttcgt 3420 ggacagcgca tcgcggtggc aacgggcgta cgggatgcgg gcgaagagcg acaccctgaa 3480 gtacgtgaag cgcttcttgg ccgacatgaa cggcatgggc actccgggat gtttccgcat 3540 ggacaacggc ggcgagttca ccggcgccgc tttcatcgag ttctgcgacg ccgccggcat 3600 ccggcgcgag tacaccgcgc cgaacacccc caaacaaaac gccgtcgccg agagcgccat 3660 ctggcgtgcg atgaaggggg gccacgccgc gcgacgccac atcctctcca tggcccacgt 3720 cgacctcgcc tccgtcccca acatcggcgc caacggacaa cggctgtggc tctcgtcggc 3780 gctctgggca tccggttgtt tcaaccgctc cgcgacgaag gccaatcagg gctggatgtc 3840 gccgttcgag gccttcttcg gccggaagcc gcccctcacc gtcgtcccct ttttccagga 3900 gggtaggatg cgcgtgaagc gggccaccaa ggcggacgtc caatccgcaa ggtgcttcta 3960 cctgcacggc gccaacaacc actcgacgtc taccgccgtc gttcttcgcg ctgacaccgg 4020 tcgcctcgcc ctcaccaaca acgtcgtgtg ggtcaaccgc cgggcaggag cgccggcgcc 4080 ggtgccggcc atcggggggg gttcttcggt caccgcggcg ccctcgccgg ccgccgccgt 4140 acctgcggcc gatgccgcac cgccgccgcc cccgcggaca tggacgtact acccccctgc 4200 accagcgacc accgcagcgc cgccccctcc cccgtcgatc ttcacaggat cttcagcgcc 4260 gtcgccgatc tccgtcgcac catcctcagc cccgccgtcg accgcagcca ctccgccccg 4320 ttcgcccccg ggcctaccgc cgccgccgcc gaagcccgcc agcgccgccg tccccgctcc 4380 tccgcacccg ccgctttcga aacgagccgt caaggagttg ggacgagagg acacgagggt 4440 tcacggccgc acacgcggcg atggagtgcg gttcatggat gagcaacaaa aaccgccgtc 4500 gccacccagt ggcggcaccg ctctccacca ccgccttgag ctgttggaca tgatggacaa 4560 ggacaccctc atctcgtcgc tcgccacccg ggaggccgtg gatcaaggac gccgcgacct 4620 accgcccccg ccgcagccgg atccgaatcc tggaggccgt ggaagcgggg gggctgtggg 4680 agctgggggg cccgtggatt ccgggggggg ggggagaccg cagatgttcg caacgatgtt 4740 cgccacccgc gaggatgtgg acgccgctct tcgcgccgag cgtcctcctg acaagatgcc 4800 tgaccttccg cactgcatgg ccagcgacct ccgcgagccg aagacgttca acgaggccat 4860 gcggtctcaa cattcagagt tatggaatga tgcaatcggt cgagagtttt tcggtttgtt 4920 ggatgcagga acttttagtc cggtgtagca accagtagag aacgccatca atgctaagtg 4980 ggtattcaac tgtaaggcag acgagtatgg atggccgacg aaattcaagg caagacttgt 5040 agcgcggggg gacatgcaga gggcttcgat tgattttgga gaattgtttg cacccaccgt 5100 atcagtgtct agtgtgcgct tgttggcagc attagcatgt gagcagaatc ttgacttgtg 5160 ccattttgat attcagcagg cttttgtgca gtctgagctt gatgaggatg ttttcatgcg 5220 cttaccgcag gggtgtggta ggttatctgg cctgatcgtg aagctgtgca agagtctgta 5280 tggtttgaag caggcatcac gacattggca tgcgcacctg acgaggtgtt tgttactttt 5340 aggttttttg cagtgtctgg cggacgcatg tgtttttcga ttgatggagg agggacgtgt 5400 gatcatgatc atcgtggtcc acgtggatga catttttgct gtagggcaga aggagaggtg 5460 tgacaagttt ggcagggatc tcaacgagat ggtccccgtg aagaaccttg gagagttgag 5520 gtggtactcc gcgtgctttt acgagagaga cgtagagaga gggctgttga ggatttcgca 5580 gcagaggttt gccgaagagt tggctgcaga gtacggaatt gagtggggga ggagtgtgcc 5640 cttgcttgtg agcgtgaagc tcaccgactt tgacgagaac gaagcgtgcg ctgatgtccc 5700 ttttcgcgag ttggtaggat ctctgatgtg gttggccact caaacaaggc cggacatcgc 5760 gaacgcagta cgagcagtag cgcggtattg tgcatctccc aagatggtgc actggaaggc 5820 agcactcggt attttagggt acgtacggag gacgagttgg atggggatta catttgagag 5880 gggagtggtg actgggatca gcatgcaggt gtttgtggat gccgactatg caagcaaggc 5940 gacagaccgt agatcggtgt caggagggct agtgatgtgt gggggagggt gtgtgacttg 6000 gttttcgagg acacaaaagt gtgtcacgct ttccaccacg gaagcagagt atgtggcaat 6060 tgccgatgtc ttgaaggaag tgttgttcct gaggcaggtg tggcgttcta tgttgccaga 6120 tgcaggtatg ccgtgcatcc cggtgttcga ggataatcag ggagcgattc agattgcgca 6180 caacccgatc acgaactcca actcgaaaca catcgatgta cgacatcact ttatcaggga 6240 gctggtagag aggaaggaga tttcaattac tcatgtgccg acgcaatttc agcatgcaga 6300 tttcttgacg aaggccatta gcaaggagtc ttttgcgttg caccgtgact ttgtgatgaa 6360 cttgcagtga aggaagtgtt ttggggtcga ttcgtattct gtgatggaga gagtgagaga 6420 gacgagagat tggacaagag aaaagagaga gtctggtgaa ggttggagga gttgttgtgt 6480 ttagtttttc ttgattgttt tggaggagtt ttgattgtgt ttgatttttc ttgtgatgga 6540 cttggaggat tttggattgt tttggtgaag atattggttt ttgtttgttt tggagagatg 6600 gtaaagagga atttggtttt tctcggagca tgacgatgca tacgagtagg ggggctatta 6660 gatatat 6667 // ID Gypsy-16_PR-I repbase; DNA; PLN; 6650 BP. XX AC AAQX01002021; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PR_; KW Gypsy-16_PR-LTR; Gypsy-16_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6650 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002021; Positions 14725 8076. XX CC Positions [4205-4429] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2701..4416 FT /product="Gypsy-16_PR-I_1p" FT /translation="MSGSVIYSAIDLTDGFYQILIRESDVPITAVSTPSGM FT LWEWFVMLQGLKNAPAAFNRMVSHALRPLRDFAPSYFDDIFVHSHAEEGLS FT AVDVHLRHLRQVFQVMRENKLYANLKKCVFCAPEIPVLGCYVSKNGVRADP FT EKVSSICSWPPPPNLTELRQWLGLTNYLHTYTKGYAGLIQPLSSLLKKDAT FT WSWRPEHQVAFDSVKRSLASAPILMLPDDAKPFHVVCDASDFAIGCALMKF FT DNEGCERVVSYQSRQMKPAERNYPVHDKELLAMRHALIKFRVYLLGEQTFA FT VYTDHASLRTAMKSPHLSQRMARWLSFFAEYNFVVHYKPGKNNILADALSR FT RPDYDPRETRGRQVIDEDEVDEDHCAMCLTSGVNLMHVTPEMPLREENAVA FT YNDDAVYAAILAHLLSPSDKTLRALPNNTRSQIDRYQLDGDLLTYSIDRFD FT APRIVIPNDDDLRARIIHEFHDSPVGGHLGRETTFAAVSRDFYWPHMYKWV FT RKWVESLPASGNEAAHVNGGASGDGWSNGAGQPSPRRCPSKLRDFVHQLEL FT LFAACRVCAKQRGTRIDGSDPLFRK" FT CDS 4034..5860 FT /product="Gypsy-16_PR-I_3p" FT /translation="MLPASSSRTTMICALGSSTSSTTVLSVVTWAAKRRSR FT QCPATSTGPTCTNGCASGSSLFQLLGTKLHMSTAAHPETDGQTERVNRVLE FT DVLRSYATSFTSWSSFLPLAEFALNNAEHASTGLTPFFVNNARHPRVPALL FT AVGHPTMPRGSTLGGEGNDGAGSTNTDTPIPIPVLPVVSTDGTPPPPAPLS FT SAAHQSVTLNAVTRSKSRRTLATPNNAASSLADWTARTLINPGPATDPVAA FT NYAPKPPARPVDDAAVSDFVLQRQSVTRFVRDALQEAVYKQKENADKRERK FT NVATFTTGDRVLLSTDGIRSSAVTNLGASKLAPRFIGPFRVTKVIGDAYTL FT DIPSSLRLHPTFYVGRLKKYHAATIPSAPEHPPAQHEQDVPPDVRALPSSH FT PSHPSARADVLPSAAPRTRALPAPASVAAVPHSFGEQPLLHPPPDEPAPPP FT PQHQAERPAPNSLPRPRHPGRPGRELYRREGPPPIVDSAGDIRWIVDRIVE FT HEDPPRTYAHTRTSTRSKHAVPTARRYRVRWLGFPPDEDTWEPRAALLRDV FT PDVAREYENAIVNENDATAGPAVNENDAADGPAANENANAGVHVPVAAEDS FT AEYPRGVRRRD" XX SQ Sequence 6650 BP; 1361 A; 2073 C; 1884 G; 1332 T; 0 other; cctggtagca ctttgtagtc cttcccatga ccaagttcga gatgagtgaa gaccagcccg 60 ccggacctcc agtgatgacc ctggaacacg cggcctttcc cccttttcag tttattgagt 120 ggccaaggtt gccccggtgt tcggagaaac cgttgtcaag tcggtgttaa ggtcagcgac 180 ccccggacaa aagggccaag gcatccaaga gttcatgggc cccgagttcg ccgaagcaaa 240 acggggagta tcaatcccct cgcatgcgtc caggaacaat gccgtcaaga tggagacatc 300 ctcctattct ggcgagggtc ctgatcacct acctctgaat cgctggttca gagagatcga 360 catcgcgatc gcctcgaggc taatcgaggc gccatcagcc aaggtgaact tcctgctatc 420 ccgtttgtcc ggaaaggcca aagaatgggc tctcggcaaa cttgtcgtcg accagtacgc 480 gttcccgact ctggaggcac tccagagcga cctgcgtctc gccttcgaac caccgcagga 540 tgagtcgcga gttcgagcta cattctttgc cctaaagcaa ggcaagatgg ccatgcgcga 600 ctacgtccag agaacgcgac accttgcatc gtgtatcgtc acgaagccga tcgacatggc 660 ttcccaagtc catgtttttg tgtttggtat gtgcgaaggt atgacgcggt actgtctcac 720 gcgcgccgag cctgccacgt tggaagaagc cttcgctctc gcgctacgcg aggactacct 780 ggtgacgtcg tcatacacca aaacgatgcc tgcgcagact cgggtgtcgg tacccgagcc 840 aatggagatc gatgcgaccg atgcttcgca gaatcgacgg tggtcgtcct ctgggagagg 900 ccgcggtggt cataatgacc tctcgctgaa ttgtttccgc tgcggaaagc ctgatcatcg 960 cgcggcggtg tgccgcgcgc cagctccgat cctcgcccac atgaagcacg tcacgcccga 1020 cgagaggatt ccggccgcac agccaaaaaa cggccggggc cagtaggtgc ggggcgacct 1080 actggctgga acggaggtcc gggtcccccg gcggcagccc gacctcctag cccccctgtg 1140 ctctatgcac actttaatgc caccactgct agtggcgact cgaggctgat tattgtcagc 1200 ctttatgtcg ccggtgcccg acgaccactc cgcgcgctcc tggactcagg agcgacgaac 1260 aatttcttcc gcacttcatg cctgtcgatc ctacccgcgg gtgttcccgt gcgtgatgtg 1320 cctggtgatg tcgttgtcaa gcttgcggat ggaaagccgt tccgtgtcgc gcgacgagaa 1380 gtctcgttgc cgtatacgtt cgacggcttc tgcagcaatg acaacttcat tgtgttggag 1440 atgaactacg cgtttgactg tatcctgggt ataccatggc tgtcccggta tcagccccag 1500 atcgactggt tagcccggtc agtcaaacgg cgacgcgact tcgatgtgag cgaagtcttc 1560 acgcacctct tggtggcacc aagagactga ccccatatca cagtcgtgga cgggacgtcc 1620 acgacgcacg ttgtgcgcag agcgagcgat ggccctctct gcacgacttg cgcagtactg 1680 ctgactgatg acgacagcgt cgaacacccg tccggttacg ggcgcgcgag gcgagcggtt 1740 gagcatccgc ggctcccgta tgatgatgaa gcggtcgagc aggggctccc gtatgctttc 1800 gatacggtcg agcaggggct cccgtatgac tttgaggcgg ttgagcaggg gctcccgcgt 1860 gtttacgaga cggtcgagca ggggctcccg tatgacttcg aggcggtcga gcaggggctc 1920 tcgcgcctag aggagggtga agtatcgtcc ggcgacagcg aaacatcggt cttgagcagg 1980 ggctcgagac gcacgaagac atcccgacgg tcgcggagac gtttgaagcc gcgccgcagt 2040 ccagtggaac tcacgacgcc accaattgag tcggtctgtg cagtcgaata tgtgggaggt 2100 gttcccaacc acgctcgaat gatcaaggtc gcgagtccac ctcgcgacgc caagtccatc 2160 acggacctgc caggtctctc ctggaagagc ttcctccggg atctcaaggc tggtgacatc 2220 gagcaagtgt gcctgatcac cgatgccaac ccagtgtctg acgagatgaa cgcaattgcc 2280 cataatgaca cgtcgtcgcg cccgaaaagc gctgaaccaa agtcagcgcg cgaggagcgc 2340 ttcgctgcgc agtcgtggaa atcactgaag gcgtccggca atccggtcta cgagacagct 2400 cgcgagttcg ctggacaaga tccctgcgga gctgccagcg gatcccggag tgcgccacga 2460 gattgacctc gtgcctggat cgaagtactg cgtgatcaag tcaaggccat cgacgacttc 2520 ttcgaaggcc gccgccaaac cggtcacgtc cgtgagagca tctcgcctca ctcgagcccg 2580 accttctgtg tgaagaagtc tactggcggg tggcgcatcg tacacgcctt taacaagctg 2640 aacgatgcca ccatcccgac gcagacaccg atcccgcgga aggacatcgt actggactcc 2700 atgtcgggca gcgtcattta cagcgccatc gacttgaccg atggcttcta tcagatcctc 2760 ataagagaga gcgatgtacc tatcacggca gtcagtacgc ccagcggtat gctctgggag 2820 tggttcgtga tgctccaagg tctgaagaac gcaccagccg catttaatcg catggtgtcc 2880 catgcgctac gcccgcttcg tgacttcgct ccgagttact tcgatgacat ttttgtgcac 2940 agtcacgctg aagagggtct cagcgcggtc gacgtgcatc tgcggcactt gaggcaggtc 3000 tttcaagtga tgagagagaa caagctctac gcgaacctca agaagtgtgt cttctgcgca 3060 ccggaaatcc cggtgcttgg gtgctacgta agcaaaaacg gagtccgtgc tgacccggaa 3120 aaagtgtcgt ctatttgctc gtggccacca ccaccaaacc tcactgagtt acgtcagtgg 3180 ttgggcctca ctaactactt acacacgtat acgaagggat atgccggctt gatacagcca 3240 ttgtcgtcgc tgttgaagaa agacgccacg tggtcgtggc gccccgagca ccaagtagcc 3300 ttcgactcgg tgaagaggag cttggcctcg gcgccaatac tgatgctccc agatgacgcg 3360 aagccgttcc acgtcgtctg cgacgctagc gacttcgcta tcgggtgtgc gctcatgaag 3420 tttgacaacg aaggctgcga acgagtcgtg agctaccaat cacgacagat gaagccggcc 3480 gaacgcaact atcccgtcca cgataaggaa cttcttgcga tgcgacacgc tctgatcaaa 3540 ttcagagtgt atctgctcgg agaacagacg ttcgcggtgt acacggatca cgcgtcgctg 3600 cgcacagcga tgaagtcccc acatctgtct caacgcatgg cacgatggct gtcgttcttc 3660 gctgagtaca acttcgtcgt gcactacaag cccggcaaga acaatatcct cgccgatgct 3720 ctgtctcggc gtccagacta tgacccacga gagacgcggg gtcgtcaagt gattgacgaa 3780 gacgaggttg acgaagatca ctgcgcgatg tgcttgacat caggtgtcaa tctgatgcac 3840 gtgactccag aaatgccgct acgcgaagag aacgccgttg cgtacaacga cgacgcggta 3900 tatgccgcca tcctcgcaca tcttctttcc cccagtgata aaactctccg cgcgctgccg 3960 aacaacacgc gcagccagat tgaccgatat caactcgacg gcgatctgct gacgtacagc 4020 atcgatcgat tcgatgctcc ccgcatcgtc atcccgaacg acgatgatct gcgcgctcgg 4080 atcatccacg agttccacga cagtcctgtc ggtggtcact tgggccgcga aacgacgttc 4140 gcggcagtgt cccgcgactt ctactggccc cacatgtaca aatgggtgcg caagtgggtc 4200 gagtctcttc cagcttctgg gaacgaagct gcacatgtca acggcggcgc atccggagac 4260 ggatggtcaa acggagcggg tcaaccgagt cctcgaagat gtccttcgaa gttacgcgac 4320 ttcgttcacc agttggagct cctttttgcc gcttgccgag tttgcgctaa acaacgcgga 4380 acacgcatcg acgggtctga cccccttttt cgtaaataac gcgcggcacc cgcgcgttcc 4440 cgctctgctc gccgtgggcc accccacgat gcctcgtggc tccactctgg gtggggaagg 4500 aaatgatggt gctggtagta cgaacacaga cacaccgata ccgataccgg tattaccagt 4560 ggtgagcacg gatggcacac caccaccacc agctcccttg tcgagtgcag cccaccagtc 4620 cgtgacgctg aatgcagtca cccgctcgaa gtcgagacgg acccttgcga cgccgaacaa 4680 cgcggcgtct tcactggcag attggactgc gcgcacgtta atcaaccctg gcccggctac 4740 cgatcccgtc gcagctaact acgcgccgaa gcctccggcg cgtccagtcg atgatgcggc 4800 cgtctctgat ttcgtgctgc agcgacaatc ggtcacccga tttgtacgag atgcactgca 4860 agaagcagtt tataaacaga aggagaacgc cgacaagcgt gagcgcaaga atgtggctac 4920 atttacgaca ggagatcgcg tgctcctgtc gacagacggc atacgctctt cggctgtaac 4980 gaatcttggc gcgagcaaac tcgcgccgcg ctttattggt cccttcaggg ttacgaaggt 5040 aatcggtgat gcctacacac tggacatacc atcttcccta cgactacatc cgacgttcta 5100 cgtcgggcga ctcaagaaat accacgcagc tacaatcccg tcggccccgg agcatccgcc 5160 ggcgcagcat gaacaggacg tccctcccga cgtgcgcgcc ttgccatcga gccatccgag 5220 ccatccgtcc gctcgcgcgg acgtgctgcc gtctgcggcg ccccgaacac gcgcccttcc 5280 agctcccgcg tccgttgcag cagttccgca ctcgtttggc gagcagccgc tgctgcaccc 5340 tccgcccgac gagcccgctc ctccgccgcc tcagcatcaa gctgagcgtc ccgcgcccaa 5400 ttcactgcct cgtccacgtc atcctgggcg accaggacgc gagctctatc gtcgcgaagg 5460 tcccccgccg attgtcgact cggctggtga tatccgctgg atcgtggacc gtattgtgga 5520 gcacgaggat ccacctcgta cgtatgccca tacccgtacg agtacgcgct ccaagcacgc 5580 ggttccgacc gcgcgacgtt accgagtacg ctggctcggg ttccctccag acgaagatac 5640 gtgggagcct cgcgccgcac tcctccggga tgtcccggat gttgcccgcg aatacgagaa 5700 tgcgatcgtg aacgagaacg acgccacagc cggtcctgcg gtgaacgaga acgacgccgc 5760 agacggtcct gcggcgaacg agaacgcgaa cgctggcgtg cacgtccccg tggcggcgga 5820 ggactccgct gagtatcccc gcggcgtccg acgccgcgat tagtagactg gaccacctcg 5880 gagagcgtgc ggcgatattt ggcgatccac gactgttcac tttcgctgag catccgctca 5940 gcgacgcgac gcagctattc ttcctcggac aaacgctcgg aactctcgca cgacgtgcag 6000 ccttcgcgca cgtggacgta acaatcatgg tcggactccc aggcgttctt gcagacgcat 6060 gctctcagct cgctgagaga gtgttcaccg acaacctcct cgcgactggt gagccaggcg 6120 acgaagttgc tcccctcctg atgcatccgg ttccaccgga cgatcattgc acaccacgac 6180 cgctgcagcg catcgtgcga gacacccgtc agcgacttcc cccgcagcgc acgaaatcgg 6240 cggaagtagc ccgtcatctc ctccagggat tctggagact tcgctcccga caaatcgtac 6300 aacgcccaag gcttgagctc ccggtccata gcgcgtgtcc gctgggtgag ttccagcggc 6360 gggtcctcca caatcgccgc cataggtgtt gcccgcgcta tctccgctgc cgagttgctc 6420 gcgcgtgttc catccgcagg agtccctgcg cttgtgtctg tctgtcgctc catcttgtct 6480 ccgatcgcgc aattctgatt gtgcctctgc ggttcgcaga ggttgctgct cgtcgccgtt 6540 gagaccatcc cgttgacgcc gcgttctcgc cgtttcccag ttttcttttc tttcagtttt 6600 ctttgctcgc actcacggag cgtgagtgca accttaagag gggggagtga 6650 // ID Gypsy4-I_VC repbase; DNA; PLN; 6039 BP. XX AC scaffold_31; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4-VC; KW Gypsy4-LTR_VC; Gypsy4-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6039 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 113-113 (2008). XX DR Genome; scaffold_31; Positions 1457220 1451182. XX CC Positions [3116-3580] - Reverse transcriptase CC Positions [4578-5075] - Integrase core CC 'GCGCC' target site duplication CC LTRs are 100% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 3873..5087 FT /product="Gypsy4-I_VC_3p" FT /translation="MRRCMALVLSCYKTTDQLLIQVLNSAARNTIIPPQIK FT NAWAQSWQWRCYLEGASHVTLVTDHQPLVYLQEQKSADKLSRRQARWLERL FT SRFQFTWEYRPGRINVADPISRVHDTVLNVLTASLADSDLGHRIKSGYDGD FT PNLAKSRVAKLQLKRRNGFWYRGNQIYVPHNAELRRAILTEYHDVPYAGHR FT GIDRTKQAIAQSYWWPGLDSDVKEHVKSCPQCQRSKPTNAKPGGLLQPLPI FT PTEVWESVTMDLVTQLPTSRNGHDAIVVFVDRLSKMTHFAPTHTTATAEDV FT ARLFVATVFRQHGLPKNIISDRDSRFTSNFWKETFRLLGTHLYMSTAFHPQ FT TDGQTERMNRVLEETLRHYISPTQDDWDEHLPLIEFAINNSKQKATGTTPF FT SLNGVRQPRYC" FT CDS join(38..1627,1631..4096) FT /product="Gypsy4-I_VC_1p" FT /translation="MRYNKAAQKRLTKFLELQKSYERYREASLQEQDPAAP FT EAANSDDEDERPLAIPNKGHHINNIPVNCPQMDVDPPAESPSETAQRASPS FT TGGLPARTPAQAAAAAQVQEMLRAARDNQVPALQAELSSFKGEVHGILAEY FT GERLGEITSALKDVQAQLRDLTPTSLPPSTSDTRRKTIIIDGICETLDSNL FT AAFLDVDMLQNCAFQALLQRHLTPEVRLEEVKQLWGEGIAKQAGGPSGSAA FT PPSKSARPSEVNKRILAPPRFSGKKDSQITNTKTWFALLMQYFDLSQMDPL FT EHFMFWLTGKAQEWAADLFLKHKSGAQPLTRDLLRDKFLLQYGDAKRDTAM FT AARDRLHAHEYDMKIDESVPEYTQRFYDIVREANDMSVADQISWYIKGLVP FT ALRGRCATDDEGKDWQDLEKLILYASGQEVRWKAGKDKAQLAVVTTQAGPS FT KITSSSRPKQSRPRSPSKQAWETVRAKKPRTSTSGTPLKCRMCSRLKPANQ FT TWEEHKKDCLRHLQEQMARLQEKTASLNANRPANDAGKRAGVSCKQAVSAV FT ARVDEVSSAEPDLKIRDSVVPPVCDPLICDRMFLRDEFRRVENELGRQFTF FT DAACNDSGDNSLCSRFASPSNSFFDTDVSGEFVWINPPYTHIKEWQQHYHR FT CKLKNPKTTSAVFAVPKWTQVECLMRSAGYQLLKTYAVGTQLFSQPVDVGT FT RSDLPGIPWPLQLWYDPPSKSVQLNSLDGNGRTMLFDARLCQTACKVLADS FT GANCGRVADGFISLEAVRRMALSVRPCTISTVRVANGTHELINGSITAKLR FT IGSFHETVTLLVLKQGVPGVEIILADDWLERKKAKMCWESHTLTVRKATGD FT TVVLRPSFWSSADDDDHLDGIAIMNYVTATLYAASTVETMSAKAAARRIAK FT GARSYLMLVQSELISESSASAETLPPDTDIIPEATLQGLLDEYKDVFEELK FT GLPPDREVGHTIPLVEGAVPPAKRSYRLTQLERQEVRKQVTELLSKGYIEP FT STSPYGAPVIFVEKANGQGLRMVLDYRALNKITIKRRYPMPNITDLFDQLQ FT GAKIFSSLDLQQGYNQIRITPEDVAKTAFIAPGMGQYQFKVLCFGLTNAPA FT TFQAVMNRIFAEHIGKFVLVYLDDILVFSKTKAEHEQHLRVVLSLLRKHEF FT KAKMSKCQFNRIELHFLGHVVSRDGLKVDERKVKVVKEWPVPTDASKLRAF FT LGLANYFRRFIQGYSSLVAPLTTLTSAKVPFHWTKECDTAFQGVKDALTNA FT PVLKLPELDKPFVVWSDASLHGTGAVLLQDDRPVAYTSSKFSSAEYNYSTT FT DQECLGTVLAMALLLGRCESCHPSNGPSTFGLSARAEKRR" XX SQ Sequence 6039 BP; 1503 A; 1570 C; 1535 G; 1431 T; 0 other; ttggtatcga tcgtcaagtt cgatcctcct tgacgcgatg cgctacaata aggccgcgca 60 aaagcgttta actaaattcc ttgagcttca aaaatcgtat gaaagatatc gcgaagcatc 120 ccttcaggaa caggaccctg ctgcgcccga ggctgctaat tccgacgacg aagacgaacg 180 ccctttggct attcccaata agggacatca tattaataat attcctgtta attgtccaca 240 gatggacgtt gatcctccgg cggaatcgcc ttcggagacc gcgcagcggg cctcgccttc 300 tacgggcggg cttccggcgc gtacgccagc gcaggctgct gcagccgcgc aggtccaaga 360 aatgcttcgc gctgctcgcg acaatcaagt ccccgcgctt caagcggaat tatcttcctt 420 caagggagag gttcacggca ttctcgccga atacggcgag cgcttaggcg agataacctc 480 cgccctgaag gatgtccagg cgcaacttcg ggatttgaca cctacatcgc tgcctccgag 540 tacgtcggac actaggcgta agacgataat tattgatggc atctgcgaga cgctggacag 600 caatctggcc gcatttcttg acgtggatat gctgcagaat tgcgcgtttc aggcgcttct 660 gcagcgccac cttactcccg aagtacgctt ggaagaggtc aagcagctct ggggcgaggg 720 catcgccaag caagccggtg gtccttccgg ctcggcggcc cctccttcaa agtctgcacg 780 tccctccgag gtaaataagc gtatccttgc accacctcgt tttagtggaa agaaggattc 840 gcagattact aatactaaga catggttcgc gctccttatg caatattttg acttgtcgca 900 aatggacccg cttgagcact ttatgttttg gcttacgggc aaggctcagg agtgggccgc 960 ggatcttttc cttaagcaca agtccggcgc gcaaccactt acccgcgatt tgttgcgtga 1020 taaattcctg ttacaatatg gggatgcgaa gcgcgacacc gcgatggccg cacgcgatcg 1080 tttgcatgcg cacgagtacg atatgaaaat agacgagtcc gtgccggagt atacgcagcg 1140 cttttacgat attgttcgcg aagcgaatga tatgagtgtt gcggatcaaa tctcttggta 1200 tatcaagggc ttagttcctg cgctgcgcgg tcgctgcgct acggacgatg agggcaaaga 1260 ctggcaggat ttagagaaac taatcctgta tgctagtggt caggaggttc ggtggaaagc 1320 cggaaaggac aaagcacagc ttgctgtagt tactacgcaa gctggcccgt cgaagattac 1380 ttcctcctct cgccctaagc aatctcgccc tcggtcccct tccaaacagg cctgggaaac 1440 ggttcgtgcg aagaaaccgc ggacgtcaac gtccggtact cctctcaagt gtcggatgtg 1500 ctctcgcctc aaaccggcga accagacttg ggaagagcac aagaaggact gccttcgcca 1560 cctgcaggag cagatggccc gactgcagga gaagacggct agtttgaatg cgaaccgacc 1620 ggctaattag gacgctggca agcgcgcggg ggtgtcttgc aagcaggccg ttagtgctgt 1680 agcacgtgta gacgaagtct cttctgccga gcctgacttg aagattaggg actctgttgt 1740 tccgcccgtt tgcgatccgt tgatatgtga tcggatgttc cttcgtgatg aatttcgaag 1800 ggttgagaac gaacttgggc gtcaatttac attcgatgcc gcttgtaacg actcgggcga 1860 caacagtctc tgttcgcgct ttgcctctcc atccaactcg ttctttgata cggacgtatc 1920 tggcgagttt gtttggatca atcccccata cactcatatt aaagaatggc agcaacatta 1980 ccaccgctgt aagctaaaaa atcctaaaac aacttctgcg gtgttcgccg ttcctaaatg 2040 gactcaagtc gagtgtctta tgcgttccgc tggataccag ctactcaaaa cttatgctgt 2100 tggaacacag ttgttttccc aaccagtaga cgttggaacg cgttcggact tgccgggcat 2160 cccttggcca ttacagcttt ggtatgaccc gccgtccaaa tcggtgcagc ttaacagctt 2220 ggatggcaat ggccgcacta tgctttttga tgctcgcttg tgtcaaacgg cttgcaaagt 2280 tcttgccgac tccggtgcca attgcggccg ggttgccgac ggcttcattt ctctcgaagc 2340 tgtccgcagg atggctcttt ctgtccgtcc ttgcactatc tctactgttc gcgtcgcgaa 2400 tggaactcac gagcttatca atggctcgat taccgctaag ctccgtatag gctcctttca 2460 tgaaacagtc acactacttg ttttaaagca aggtgttcca ggcgttgaaa ttattctcgc 2520 tgatgactgg ttggagcgca agaaagcgaa aatgtgttgg gaatcacaca cgcttacagt 2580 acggaaagct accggcgata ctgttgtcct caggccttcc ttttggtctt cagcagacga 2640 cgacgatcac ctagatggta ttgccatcat gaattacgtt accgccactc tctatgctgc 2700 gagtacggtg gaaacgatgt cagctaaagc agctgcacgg aggattgcca aaggcgcacg 2760 aagctattta atgcttgtgc aatctgagct catttctgaa tcctcggcgt ctgcggagac 2820 acttcctccc gacaccgaca taatccccga agcaacattg caagggttgc ttgacgaata 2880 caaggacgta ttcgaagagc tcaaaggcct tcctccagat cgcgaagtag gtcatacgat 2940 tccactagtg gaaggggctg taccgcccgc taaacgatcg taccggttga ctcaattaga 3000 gcgccaagag gtccgcaaac aggtcaccga attgttgagt aagggttaca tagaaccctc 3060 tacttctcct tatggtgcac ccgttatctt tgtggaaaaa gctaacggtc agggccttcg 3120 catggtcttg gattaccgtg cgttaaacaa aatcacgatc aagcggcggt atcctatgcc 3180 aaacattact gacctcttcg atcaactcca aggggctaag atatttagtt ccctggactt 3240 acagcagggc tacaaccaaa ttcgcattac accagaggat gttgcgaaaa cggcctttat 3300 cgctccggga atgggccaat accagttcaa agtgctgtgc tttggactca caaacgcccc 3360 tgctacgttc caagcggtga tgaatcggat cttcgccgaa cacattggca aatttgtgct 3420 ggtgtacttg gacgacattt tggtcttcag taagaccaag gccgagcatg aacaacacct 3480 aagggtggtg ttgtccttgc ttagaaagca cgaattcaag gcaaagatgt ctaagtgtca 3540 gttcaaccgg atcgaactgc acttcctggg ccacgtagtc agccgtgacg gcttgaaagt 3600 agacgagcgc aaagttaaag ttgttaaaga atggccggta ccaaccgacg cctctaaact 3660 gcgcgcgttt cttggcttag ccaactattt tcggaggttc atccagggtt attcctctct 3720 cgtggccccc ctcacaaccc taacaagtgc gaaagtgccc ttccactgga caaaggagtg 3780 tgatactgcc tttcagggtg tgaaagatgc cttgacaaac gcaccagtat taaaactccc 3840 tgagcttgac aaacccttcg tagtttggtc tgatgcgtcg ctgcatggca ctggtgctgt 3900 cttgttacaa gacgaccgac cagttgctta tacaagttct aaattcagca gcgcggaata 3960 caattattcc accacagatc aagaatgctt gggcacagtc ctggcaatgg cgttgttact 4020 tggaaggtgc gagtcatgtc accctagtaa cggaccatca acctttggtc tatctgcaag 4080 agcagaaaag cgccgataaa ctttccagaa ggcaagctcg atggttggaa cgattgtctc 4140 gattccagtt cacttgggag taccgacccg gacggattaa tgtcgcagac cctattagtc 4200 gggttcacga cacggtgctt aatgtgctta cggcctcgct ggcggacagc gacttgggac 4260 accgaatcaa aagcgggtac gacggtgatc caaaccttgc taaatcaaga gtagccaagc 4320 tgcagttaaa acgaaggaat gggttctggt atcggggaaa ccagatctat gtccctcata 4380 acgctgaact gcgaagagcc atcttgaccg agtatcatga tgtcccttac gcaggccacc 4440 gcggtataga ccgcaccaaa caagcgatcg cacaatcata ttggtggcca gggcttgact 4500 ctgacgttaa agaacacgtc aaatcatgtc cccaatgtca gcgtagtaaa ccaacaaatg 4560 ctaagccggg tggattactg cagccccttc ccattccaac ggaggtgtgg gaaagcgtga 4620 caatggattt ggttacgcag ctaccgacat cccgcaatgg gcacgatgcg attgtagtgt 4680 tcgtggaccg gctgagcaaa atgacgcact ttgctcccac acacacaacc gctacagctg 4740 aagatgtagc ccgcctcttt gtggctaccg tcttcaggca gcacggcctt ccaaagaaca 4800 ttatttcaga ccgggactct cgcttcacaa gtaatttctg gaaggaaaca tttcgcctgt 4860 tgggcaccca cctctatatg agcacagctt ttcacccgca aacagacggg caaacggaac 4920 gcatgaatcg cgttctggag gagacactca ggcactacat ctcacccact caagatgatt 4980 gggatgagca tttgccactg attgagtttg ccataaacaa ctcaaaacag aaggcaacgg 5040 ggacaactcc gttttccctg aatggtgttc gacaaccacg ttattgttga tttttggggc 5100 cgcattcagg gtttcgcagc tttaggaatt ccacgaaaag gttgggaatc cgttggcgca 5160 catcacccct ttttgaggat tatatctggc aaattgattt gttcgcgaga gcggttaccg 5220 atgagaggtt aattatctga gatgataatc ttttggtata ttagtctcta ctgcagtgca 5280 cggccagctg gcccgatggc tctactcttc gggagtctgg agcccactgt aacaaccaca 5340 cacacgtgtg ccggttgacc ttcacctcaa aaccaaggtg cctgccgctc agaagcaaga 5400 agcgatgctt cgtgagcgta taagcaaagc taaaaagtgt ctcttggctg cgcaacaagt 5460 ccaaaaggac gacgccgaca tgcataggcg tccagtgcgt tacgaggttg ggcagaaagt 5520 gctgttatct actaaaaata ttacattaaa aacccctgga actaagaagc tgatgcctaa 5580 gttcatcggc ccatacacgg ttgtcgctcg cgtgggcgaa gctgcggtaa aactggactt 5640 accggcggcc tcccgcctac acccggtctt ccacgtttct ttgttgaaat tgtacaaaga 5700 agacgtaaag cgacagccac cggcgccact cgtcattgag ggtgagccgt attttatggt 5760 cgaagccatt gtcgaccatc gcgatgtttc agtccgaggg ggacgtggaa agacacgtcg 5820 agagtatttg attaaatggg aaggttatga ctccagtcat aatacctatg aaccagagga 5880 atcccttcgc cagtctaccc ccttggccga atccatcgac gaatatgaac gcaaactggc 5940 gtctaagaaa caccctcaag ccccggaaaa acccaaggga cggaaatctt ctaagaagaa 6000 gtgacgctcc cgggacggtt cgcttcagag gggggagac 6039 // ID Gypsy-17_PR-LTR repbase; DNA; PLN; 912 BP. XX AC AAQX01002873; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PR_; KW Gypsy-17_PR-I; Gypsy-17_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-912 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002873; Positions 4651 3740. XX SQ Sequence 912 BP; 255 A; 250 C; 244 G; 163 T; 0 other; tgtggcgaag cgagcagtca atttggcggt cacgaccgat caatcatgaa aggatgggat 60 tgggacctgc gatgggtgga tctggccgtg ggacaataag tccgaaaatg cggatgacca 120 tcactttcac atgggaccat cactctgcat cggatgatcg acatgggtac acgcgatcac 180 acaggacatg gctacagaat agatgatcga catgggtaca cgcgatcact cggacgatcg 240 ccgaggagat gggtacagat cggctgatca tttggcaagg taccactgaa agggtacacg 300 ggaggtatag gatgggttgt ggatcgtagg ataggaatca ggatggggag tgggtacata 360 gttcttaagg gataaacaga ccagaatttt ccttgcaaga cacaagtggc cagcggaatt 420 ccggggaagg aagtatattg acctacccga cgacccgaca acccacatag tgaaatcaag 480 tgtaaacgtg gaagccccta gatcgcttgg ctaggcgcgc tctcccttct gtctcaactc 540 atcaagaccc cgccatagga ggcggcaagc aacgtaaagg accccgcaaa ggaaaacaac 600 cccccgtgat cgatcccaca cctgataccg actgactgct tgaagcatat ccgcgcagta 660 gtcacacaca cacacacaca cacacatccc ctgaagagcc catcaagctc aaaccccgat 720 ctcgatcacc actgatactc ctcgcgtgag taccggaaga gtgcaacccg cccaagccgt 780 cgggtacaca aggtgagcta caaggtcaag atccaccgga tcaacggagt accccctccg 840 acagtcggca gtccgggcaa ccgttggcga gtgccggtca catcagcaat tttgtgatcc 900 cgctccgcca ca 912 // ID Gypsy-33_PIT-LTR repbase; DNA; PLN; 276 BP. XX AC AATU01001197; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_PIT_; KW Gypsy-33_PIT-I; Gypsy-33_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-276 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001197; Positions 26368 26643. XX SQ Sequence 276 BP; 69 A; 84 C; 53 G; 70 T; 0 other; tgtcatggtt caacccataa ccttggcatt caacgtgagc acacgctggc tgtccaatgg 60 gacagccagc aactcgtggc tccgccaagc cgtctctaca agtcaaagcc gagatgcttc 120 tcatatggtt tcctaggcta gagcaggacg acaccaagaa gctctcgttc cttaaacttc 180 attcttaatc tcattctcag ttttaccgcc tacaactcaa gtcctacggc tacaactcaa 240 ggttgtatta cctgcgtctc acactaccgc gtgaca 276 // ID Gypsy-6_ES-I repbase; DNA; PLN; 6671 BP. XX AC CABU01005454; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_ES_; KW Gypsy-6_ES-LTR; Gypsy-6_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-6671 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005454; Positions 15522 8852. XX CC Positions [4307-4789] - Integrase core CC 'GTTG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 3602..5698 FT /product="Gypsy-6_ES-I_1p" FT /translation="MCTALDAESQGLRRSSGTRTPSVRLRPIGDVQLPPVG FT ETGLLHDEQEAGPTPVEAVPPAPPLPALPPSPVHRSHDDTGEVLAARGEVP FT RSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQVRMRLSEKESTG FT QGGSVDKQYDLGADQVIRYDDGKGRKLPAIPDSMVADIIALVHTMHGHAGI FT GATLSVLRDHFHWPTMTRDTRQYVLSCSCRRRKRPQSRRVAMMPGRPLEPW FT DELQMDILKIDTPSLTGNNYILLVIDRASKFPFGFPLETKQAVGVARVLVE FT LCLTFGVPRAIRCDGGSEFGAEVVKHLCRWLKADIVFGAADHPRGQGSVER FT LGGWLQELLAELCRSWPDRWDEYVSPSIWMKRTLPDTALPSHMTPFELLFG FT RKPRTTLDSLVPLTDESSTEGGLDNFVERRKQNLREVRVALEKRHELRVAA FT RAKANATIERSSAGVAVRKNSFVLVRETESRRHRDHRGRKLQHDLYTGPWK FT VTDVIQPGLSVEVSLHGRRKRSRRVSTADVKPFHLRTPSLRHSIADEFATY FT AWGPDFKLPFGAAELSEFVSIADCRRSRSGVRLVWEYQGKSGSGAVSDWVS FT EDTMLRSFTPLQLDGFVALWHLYHPQRANDLPPVSNKPRAPLSRAEALELF FT PIGFTFRKELEGGLNLQGQVFDFLHPYWRVRYSDQNWEELSRRELERLSR" XX SQ Sequence 6671 BP; 1262 A; 1787 C; 1901 G; 1721 T; 0 other; tggtgtccga tccgagcact gtagtacatg cgctgttgtg gtactgctgt tgtgtagacg 60 tgaggtacag tagctcacac tcacgctggg aaatgcggcg agattattat ttctgccgcg 120 gccctgcctg catgttgttt tgtcgtattg tctatccttg cggctcgtgc ttcgagccga 180 actgtccatc gcgaaagcac acctgggagc ctctacgctc ttgggtgtct gtccctttgc 240 tttcaacctg ttgtggccct agttttcttg cttgctatag cgtgctgtgg gtacaggtta 300 ctgctgcagg agaccctgtg gctcacactt tttcactgcc gtggggagaa ggaggaccct 360 gtggctcaca cttctttact gccgtgggaa gaaggaggac ctggccgcac acgcagacga 420 cggaggctgg ctgtttcctg atgggcgagt tgcatgcaag cttgagccac acacaccatt 480 ttgacccctg tagccgtctt tccctttcgg cggccgataa tgatgatgtt tatgaggaat 540 tatgtgcata agtccgagct tgagttgcag attcaggcct tgcggaaacc ggtgtgtgtg 600 tgtctcgctt tcgcaacctc ttcctggact tggaatacat gcgtatggtc tttgctgctg 660 gatgcaagtc cacgtccaag acccaggccc aagcgtcgct aacatcaacg cgcaaattct 720 tgctaccacg tacgtaccac gcccaccgat tggcgctgga ccgctggacc ccaattttcc 780 atttcctctg ctgctttcaa gcgtttgctc acctacctgc tgtcatttta tgcgctatgc 840 tacatattat gcatcgccgc ttcattccgt cagcggatat ttgtttggcg tttcgttatt 900 cgaccatggt tcggctatga ttttctatta cttttttttg ccgcctgcct acagtacact 960 ttttgttatt acattcacgc tgcccttttg cgttttatcc tcatagccat ctgcttgatc 1020 tgctcactta ttttattcta gtgcaatttt tgttttaccc ttcacccaat tttcgttttt 1080 ttcatcagca gccttaacct gctggccctt actcccctgg ctggcttctt gtctgtcgca 1140 cgtgcgcacg cccatccatc tgcatgcatg tgcgtgtgaa ccgccaactg catgtagttc 1200 tatctgctgt acatcttatt tgctgacggt gaccagcata tgagcacgtt cctctgcatg 1260 catcgatttg gcatcactgg ggacgctggt tcccaggatg ccaccgtttg tttctaactc 1320 gaccccagat gattgcttgc tccgtacggg aaggccatag gtgggatgta cgcgaacaca 1380 cacactgctc gattccccgt tctcgaccgt tgccgcctaa atcgagagcg tgatagcatg 1440 gcgagaattg gtgtggaacc agcagttgcg ttgtgtgtcg cagtctccca ggccgggagg 1500 ttgcgcccct tctgctctct cgtgcactgc ttgttttatg ttgcctgccc ttttgcttct 1560 cgttagccgc gcgttgcttg ttgcttgctt gctcgctcct cgtctgccgt gcgttttgcg 1620 ttgcctgttt ttcgctcgtt ttgctgtgcg cttcgcacgt acatggattg cctccttcat 1680 tattattatt atttatttat ttttgtatgc tcgttttttt gtgacgttct tttctttgtc 1740 cttctgtttc ctgtttgggg acatttcttt ttacccaata atcattccca tttctgagtg 1800 ttcatgctga cgttgtctca taatcctttg tttgcaacca cgcagcttgc acactggtgc 1860 atgtccaggc gtgcaacccc atgcccaact ctcagctaac taaccctaac atgtccaccg 1920 gctgacccgg gtgactacac ccatggccgc ccccccggag gggggaggtg ccactcctgg 1980 cggctgcacc gacgtctgat attggtgtag ctgccactcc tggcggctgc attgatgttg 2040 ggtattaggt gtagctgcca ctcctggcgg ctacaccggt gtctggtatt ggtgtagctg 2100 ccactcctgg cggctgcatt gatgtttggt attaggtgta gctgccactc ctggcggctg 2160 caccgacgtc tgatattggt gtagctgcca ttcctggcgg ctgcacctgt accactgctc 2220 gtcttgttga gggcgatgaa acgtgtgtag cgaccactct ggttgctgca cgtaatacat 2280 gcgatacgtt ttccctgaaa tggtatatgt gtaactgctg atcgcgcgtc aggcagccga 2340 aatgcgcgtg acatcgcttc cttgaatgtt tcagtttttg caagccatcg gtttgttcac 2400 gctctcacgg ttgtggttgc ctgtggtcct gaccctgtcc gacgctttgt gtcgttacgc 2460 tctacccgga tctatgtttg ctctctactg ctcagctgtt cacattggct ggctgctgta 2520 gtgcacactt ggaggttttg ccctgccttc tgtccccatg tggcactctc tctcagtgct 2580 catgcatgct gtcacgtagg ggcgaggtgg agttttgctc ttggcaacac acgctgcgct 2640 gccggtagaa accgctttcg atgccgatat aggacgtcga agagagcacc ctcgcacttt 2700 tggaaacgac cgcggatgga tgctttgact tcagcaaggg gggatgtcgc gcggccgtca 2760 taacacagct ccccggggac cgcgggatat tgctttctgc aaggggggag acgccgcggt 2820 caccggagca cggctgcctg aaagcagggc gggataccca ggcaggattg gaggccatcg 2880 gaatgtcgtc ggcacgtctc ccagaacaac agcaacgagg cgacgcgcac agggggcagg 2940 tttgcacaag tgtcgtgaca gcagttgaaa gcttgggggg acgtaaagag gcaagacgtt 3000 gagtaggcta atgcgaacaa agggaacgag ttgccagcca ccgcagagtc catgttagcc 3060 gacatagtcg tgctacccca cacacgtacg accacgcagg gatggaagtg acctggtctt 3120 tgatattcta cagttgtcac tggcccacct tggcgagatt cattggcagt ttgtggtggc 3180 catgttgcac tacggatgtc gaaagaataa gagaccgtta ccctttctcc taacacaacc 3240 cccttcgagt acgggtagtt tgcccgtccc tagcacgtcc ataaaggctc tttgtgacgc 3300 cgcgcgttga gacatcgcca gcgtcgtaga gcacgttgtg cccgacgcgc gctcgcggct 3360 ccctgttgca gggcctgctg aggagaacgt cgatgactct tttcgagacg atttgtcgcc 3420 cgcggtagag gacgcgtcag tcgaggctct gggcccagag ttgaacggtg tgagattggc 3480 caatctagac cctgtacagg cagaccaaaa ggagaatgcg gtagctcacg tcccttcccc 3540 acccttggtc catggggccg ttatcgctaa cccctccgcc cttggagcgc tgccctttgc 3600 gatgtgcaca gcgttggatg ccgagtccca gggactacgc cgtagcagcg ggactcgcac 3660 gccatccgta cgcctgcggc ccatcggcga cgtgcagctg ccaccggtgg gagagacggg 3720 gcttctccat gacgagcagg aggctggacc cacacctgtc gaagccgtgc cacccgcacc 3780 cccgcttcca gcgctaccgc cgtcgcccgt ccatcgaagc cacgacgaca ccggtgaagt 3840 gctcgcggca cggggggagg taccgaggtc gtcgtcggga ccagatgttc gtgggacgtc 3900 agccattgac cgggcggcgc aggttctcac caagccatcc atcctcgcac aacggcaacg 3960 ggacgatacc cttttgggcc aggttcgcat gaggttgagt gagaaagaga gcaccggcca 4020 ggggggaagt gtggataagc agtacgattt aggcgctgat caggtgatac ggtacgacga 4080 tggcaagggt aggaaactgc cagctattcc cgactccatg gtagccgata tcatcgctct 4140 ggtacacacg atgcatggtc atgcggggat cggggcaacc ttgtcagtgc tgcgtgacca 4200 tttccactgg ccaacgatga cacgtgacac ccgacagtac gtgttatcat gtagctgccg 4260 cagacgcaag agaccgcaga gtagacgggt agccatgatg ccaggtagac cgctagaacc 4320 gtgggacgag ctgcagatgg acatcctcaa aatcgacacg ccttcactca ctggaaacaa 4380 ctacatcctg ctcgtgatag atcgcgcctc taagttccct ttcgggttcc cattagagac 4440 caagcaggct gtgggggtag ctcgagtgtt ggtggagctt tgtctgactt tcggtgtccc 4500 acgagccatc cgctgtgatg ggggctcaga gttcggagca gaggtggtca agcatctgtg 4560 cagatggttg aaggcagaca tcgtgttcgg tgctgctgat cacccgcggg gtcagggctc 4620 cgttgagagg ttggggggat ggctgcaaga actactagca gagctgtgcc ggtcctggcc 4680 cgacaggtgg gatgagtatg tgtccccgtc gatttggatg aagcgtacgc tgcctgacac 4740 cgcgctcccc tctcacatga ctcccttcga gctcttgttt ggccgcaagc cccgcacgac 4800 gttggactcg ctggtgcctc tcacagacga gagtagtacg gagggagggc tagacaactt 4860 cgtggagcga cgcaagcaga acctccgcga ggtccgtgtt gcgttggaga agcggcacga 4920 gttgcgagta gcggcgcgcg cgaaggccaa cgcgacgatc gagaggtcgt ccgcaggagt 4980 ggcggttcgg aaaaacagct ttgtactggt tcgggaaacg gagagcagga gacatcgtga 5040 ccaccgaggg aggaagctcc agcacgactt gtataccggg ccttggaaag tgacagacgt 5100 catccaacca ggcctcagtg tagaagtcag cttgcatggt agaaggaaac gcagccgaag 5160 agtgtccacc gccgatgtga agcctttcca cctcagaacc ccctcgctca gacattccat 5220 cgctgacgag tttgcaacgt acgcttgggg acccgacttc aaactccctt ttggagccgc 5280 tgagctatcg gaattcgtct ctattgccga ctgtcgtagg agccgatcag gcgttcggtt 5340 ggtctgggag taccaaggga aatcgggcag cggagcagtg tcagactggg tatcagagga 5400 taccatgctg cggagtttca ccccccttca gcttgatggt tttgtcgctc tttggcactt 5460 gtaccacccc cagcgagcta acgaccttcc gcccgtctca aacaagcccc gtgccccgct 5520 atcgcgtgcc gaagccttgg aactgtttcc gataggtttt accttcagga aggaattgga 5580 aggaggtttg aacctacaag gccaggtgtt cgacttcctc cacccgtatt ggcgcgtgcg 5640 ctacagcgac cagaactggg aggagctctc ccgccgtgag cttgagcggc tctcaagata 5700 agggctgaaa cgcggcatgc acaagctcca gggccatcgg attgttagca tttatagttt 5760 gggaccaccg cacaggcgtt ttgtgtattt taccgttcgg tagctagaaa acacacccgt 5820 gttagttggg gtatcgtctg ggttgataga tggttgcagc cgtttgccgg tagttttacc 5880 atgccggcac aagagtcggc acgtttcatc ttaggctaaa attcgataga gtgccactgt 5940 ccagtcttag gaattaaggt tgtttggtga aataggtgac gtgtccgttg ggctgggacg 6000 tgtttgtcct ggatgttcat ctagtataga cattagtgta cgttgggcta gggtcgttga 6060 tgtcctggaa gtttactcgg tacggggatt agtgtcttac cgtaggttaa gcatttcgcc 6120 ctgctccgac tgggggtgtg atatccgaga ttggtgtcgg gcttgcgaag tacccttgcg 6180 ggagtgtgac accgttttgc ggtgtggttt ggtgttgtag gtgctttgcg caatgggatt 6240 gcccctggat ggccaggtct ttcccgcgct gtagatgaga gtcgggccag ccacttcagt 6300 gaaatcacca agcgagggac ggttttttat aagagtattt tacgtccgag tgtcacttgg 6360 tgttttcggt cgctagccta aattcttgga ctctcgggat gggggcgaag ggtttctccc 6420 ggacaccggg tttttccttc gcacaagtcg atgtcgggcc tgttcaatgc gcagtgagga 6480 tgtcgagacg agccgttctt atgtaggttt tttcgctgtc acctctcgac attttcggtt 6540 gaactttcgg tccaacttat agatatcgca tggtagtttt caagaggaag cgcgccactt 6600 tgcggtgccc gcaattcccg ctaccgttta gcatgtgaca gctgacaaat agctgttcat 6660 gctagggggg g 6671 // ID Ambal-3N1_FCy repbase; DNA; PLN; 2530 BP. XX AC . XX DT 26-JAN-2010 (Rel. 15.01, Created) DT 26-JAN-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ambal-3N1_FCy is a family of non-autonomous Ambal non-LTR DE retrotransposon - consensus. XX KW Ambal; Non-LTR Retrotransposon; Transposable Element; Ambal-3_FCy; KW Ambal-3N1_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-2530 RA Kapitonov V.V. and Jurka J.; RT "Ambal, a novel clade of non-LTR retrotransposons from diatoms."; RL Repbase Reports 10(1), 107-107 (2010). XX DR [1] (Consensus) XX CC The Ambal-3N1_FCy consensus sequence was derived from 7 copies CC 86-97% identical to it. Ambal-3N1_FCy is characterized by CC 15-20-bp TSDs. It shares 68-bp 5'- and 220-bp 3'-terminial CC portions with Ambal-3_FCy, which is its autonomous relative. CC The consensus sequence was derived from sequence data produced by CC the US Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX SQ Sequence 2530 BP; 917 A; 576 C; 325 G; 707 T; 5 other; acttcccacg tttttcgtgg acgtcaatcc aattaaattt tcagtactta aaacacgtag 60 aatcctacac accaaatttt caactttgcc cagtattttc accctattaa ccttcattcc 120 aatgactgat acaccccata cagactaata taaccacgat ctctctaatt ctttcattgt 180 tattgctgtt attggctttc atcattgtca actcaacacc tccaatttca cgacaaagac 240 cctttttttt gattgcttcc gaacgaaaat agggtgctcc cagaaattaa ttatttcact 300 cgatttttga aagatcgcgc tcctcacatt ctgacaccaa agaacaagtt tttgatatgc 360 ccatttccac taactatggt tcaaccggta ggccacctgg tgaattccac ttacgtcact 420 cctcaaaaaa ttctagcaat atttttgaat ttccattcac tccttttgat atctttttca 480 ccgaatttgc taataataac aataataacg ttatttgtta taacgatggt gaaaccgacc 540 cactactact acactactac tactactact accatgacta caatacaaac accacgacaa 600 ggatgacgaa gaaatcgctt cgaataacaa ccgcgtatgg catccaacgg taataatagt 660 agtaacagaa caacacgatc acttcaacag ttgctcgtcc acaaccgtta ctacaataca 720 agtacctacg acgataacaa agaagcagac cactgcccac agcatccatc gtacggacaa 780 aatacagaat ggttcgattc gatattcaac aacaacaaca acaataataa caatagcaaa 840 gacgcatcac mtcaactact actactacta ctactactcc aaccattaac tacaatacaa 900 gcacctacga cgataacaaa gacgcaaaca ctgctcacag catccatcgt acggacaaaa 960 cagtaaaatg gttcgatttg atattcaaca aaaacaacaa caacaacaac atcgaaacca 1020 ctaataataa taataacaac gacgcaacct caactactac taccactacg actcctacca 1080 ttamctacaa tacaagtacc tacgacgaca acgacaaagc aaacactgcg aacgcagcat 1140 ccatcgtacg gacaagataa ataagaatgg tttgatatct aataacaaca acaacaacaa 1200 ccatatacaa tggcagccaa ggtaataata ataataatag taataataat acgaccgatg 1260 ctaacccaac cattaactac aatacaagta cctacgacga taacaacaaa gcaaacatca 1320 ttgcgcacag catccatcgt acggacaaaa aacaatggtt cgatatcagt mataacaaca 1380 acaataataa taatagtaat aataataata gcaataacaa attcgatgta tcatctatct 1440 gatccaacca acgccatttc gattactact actactacca ttaactacaa tacaagcacc 1500 tacgacaaga acaacaaaga aaaactttga ataacaaccg tcgtacgctg gcagccaaag 1560 atatcaataa taataatgtt agtagtaata ataacagtaa taataataat aataacaaca 1620 acagcatcga tcctcaagca ctacaagcac tactacaagc accaccgtca ccaaggacaa 1680 cgacaaaacc ttccatcttt ccgttctatt caaactgatt cccttatatc taaactcatc 1740 ttcacccaag gaattcaaca cagcatacca tcaasaacag caacaacagc actatcatgg 1800 taaacaacga taccaattcc agcttgaaca gcaacaaaag catcagcact tcaaacaggt 1860 tcacaacacg gagagaatgg taacctctat tgttttgaag cttactcttg ttgcttggga 1920 tatatgggcg tttcgtaatg tatattaagt tttccttttg ttttgttttc atacaattat 1980 tggctattgc tttgaaagag cttttaaatt tacawtttga tgctcaacat ggtctgatat 2040 ccagatgcgt aacgtacact tatcagtaat ttgtgactac tgattagtga gtaatgatga 2100 ttcagtaatt ggtactactg atttgtctaa cacttaccaa taatttgtta ctattggttg 2160 gtgtaatgat gattcgtcca ttccactttg tggtctaatc tcattctatc ttacggattg 2220 atttccaggt gacatccaaa tcaagctgga ttgatttgct tgtgttgatt tggatattca 2280 tcaatatgta ttctcattca aatacaaaat atacagtaat tatatggtgg caagcgttgc 2340 tctatacata cacgcacaca gtactgtcgt tctaccgaag ttgtattatt cttcacttat 2400 cggaggcgag tttaaagacg taatagtctg ctatacatat ctacttttgt ttttttttgt 2460 tagattaata aaatatacat atatttatat atattatata tcacatagta aatcaatgag 2520 ttaaattaaa 2530 // ID Gypsy-26_PSo-I repbase; DNA; PLN; 11534 BP. XX AC AAQY01000890; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_PSo_; KW Gypsy-26_PSo-LTR; Gypsy-26_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11534 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000890; Positions 67540 79073. XX CC Positions [6580-7062] - Integrase core CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 603..2111 FT /product="Gypsy-26_PSo-I_3p" FT /translation="MLRDSGFVLGAFEMERLCDWDLKSWLRAIRVVQEPLT FT ILAGPVKQDATSSATGQDAPSPSAGPAQTSTTTPSPPPRYQSSVDSDSSFE FT SPKRMPMNRPPRVMQLSAAPTRTEVTKPAEEVLPKALRESIIKLMQTTVMN FT TPRADTAAIPTGPKPPANPTPTVARPQEAADVAMESVSSRSSTRSRTRRDA FT DDPDDLFDLDIGVPRTTAAVSTATAGGVALARVRLSASSKLKEFSGRDASE FT EKARLWLNRLKSAARRDGMAGEEVCGQFSDLMSGPARQWYLQLPRKVKKSW FT TELMEQFRVQYCGKGVSMASRYYHAAQRPDETPLDYLYRLNVAGLRANIPY FT AEGTTEKKREHAEHFIRTVDTQEAELASRLTLMEVADSEALEKKLRARQRG FT LAHQKKTSFGSNKFRQRRRPRRLSRRAPCMRFTSRRTSTTWNAKVATATIA FT STTKTRRTKNAPSCSSRDRPRRKSRRVVTSIPTTRDATARGAATVVHVAMS FT KETAGSC" FT CDS join(2809..3561,3565..7794) FT /product="Gypsy-26_PSo-I_1p" FT /translation="MHLWVDDLVGQHAILGMNFMVPAGVRIDTADGAACLP FT DEVHIQMIGRRPLYGARMHPVNVKTPVRLEPGDTHEVLLRPDRNAPFLWVT FT RAESWVTTFVKGRVGKETYLRVTNIGDAAITLDAHETLGWWTPSDGQPRNR FT GFIRLGSTRYKQWQNLAYGATRDAEMNWIPVELDGPMTDRPSYPTPKAILR FT PESRQLGTRRAVTPVLAAVAEAPKGRGVDLPPDDHKPDTDEEAVESEPDMP FT PTVAGSAAMESPESELAEPKLDGPNPAEPNFDEAKPDEQEEDDAVLIHEGS FT DLFVEDLESEMAVLPDVSLTAEVKIEDLKVGMPTGLPPEEAARQETRLRQI FT IWKRRKWLIGKGNALPTAALGVVCDIDVGDAKPVAQRVRKIPPQFREKVAD FT LIKGLLSTRMIQKSKSPWASPIVVIIKENGVDIRLCIDYRLINGLTQLMIY FT PMPLVNDLLEDLDKYLWYCSLDMASGFWVVPMTDRARLTSAFITPMGLYEW FT LRMPFGLCNAPQIYQRLIDNALYGFMKLSPDGSTRDVFEDGEPVKPGIHSV FT LGRRSYIDDILIGGTSWDDLCEKVERLLDVCEQWHLSISVEKSEWGMSKVD FT YLGHRVSGLGVEAKPKNLESLTSLEFPRTIKGLQPFLGSLNYYHRFIADFA FT VYATALYSLTETDFSEYVTHPEVRGHEKWTHATRAFDALKAKLAETPMLKH FT FDANRESVVIVYASDWAISGVLTQVHDEVYMPVKFTSRTLKPNELNYDIVE FT KEILALLRVLNECYTMLAGRPVRVLTRHATLAWLFRSKGLQGRLSQWAAIL FT SPWKLEICRSMKGEEELLGALAASITPRAFVDAALEEIAPRRRASRIVVIP FT VPDVARDEVLHVLRFDGSAKAKREGGAYSAVIWQLPNWEIVRAASGYATDL FT TVNEAEYRGLLLGCSLLEELDDVTRLVVCGDSNLVIRQMRDEMDCNSPGLK FT LLRQKTRNALQAWPRHELFHVRRDWNASADMLAGQALQRQGGRNAHSPEEI FT QDLKTLNRLEEVIRPRASSPGMASPASPDADNLDAENLDSENLDSENRDAE FT NRDAKTRGADDPAGKAMDAGRGTAQVLAVTTRSAAARTTTRRVRPPEVLEE FT LVVQRLRLDRIRVAQDEEVWIVNLKKYLRGDVGDLSRREVKNFQKLAPQYE FT EGEGGLLNYQPRRDDSAEDRDVMMKLVIRETLREDVHHYHASLEGGHQGIS FT RTYQRVRRHFHWPGIFRSVQRYVGECTDCETGKGRPTIQGESPGNIVATYP FT FQVIAMDHIPSLPASYKGNTELLVWVDLFTGFVVVKANASRTAQTVAEAYE FT EAVFRRFGASEAIRHDREPGFMSDFFKAFSKLMGQRQRATLAYRPQANGAA FT ERMVQTVTRAIKMYIADVDQRDWDEYAERLTFALNTSHDRTRNETPFFLVH FT GWDPRSTLEATLAVGNTSTRDAEARRWRLRIQRHYKVTRAQALELVREAVD FT ERARRQTENATRHEIATGSQVWLYLDRVKPGYARKLAHMWHGPFRVAELVS FT AFAVRLETTGTPYQLYPVVHISKLKPVREFPSRPATQLTVPAEERFDFDEE FT LLPEDSWEATRELEDDVFEVEKIVNVREGRATRYGRTRREFEVKWKGYPDT FT TWVDELDLNCGGLLYDFLRQRTGRNRFEAMQSHENAEAVEPGG" XX SQ Sequence 11534 BP; 2432 A; 3449 C; 3865 G; 1788 T; 0 other; atggtgccgc gacccgggag tactacttcg aatgacgggc caacgatcca agtggcatcg 60 gaggcaggtg cgcagtcgac tggaaggtcg ccgaccgcaa gagagcacag tgagagacct 120 gtcgcgtcgt ggagctctga cggaaccttc acgacagtcc acggggccag cgacgaccag 180 gagggctacg aagaacagtt tgccgttccc gatgcggctc ccgtcgaggg agcagcgaag 240 ggccgcgacg caagtcgcgg tcctaccagt cggaagcctg caaaggccga cgaccaacaa 300 caacccaccg ccaaggcagc cacgaagcgc aagtcgccca agaggaagaa aaagaagctg 360 cgcgcgccgg actcggcgga ggagtcgctg tccaagccgc aaggcaagga cacgggacgt 420 cagtacaccg tcgaggaggt acggtacgtc gtggcgcgca cggagctctt ccgtctgcta 480 gaacaagacc caatcttggt cttcctcaag cccatgctga tgagcaactt cacaggcccg 540 tcgtggcgcc ggacttcgat agactcacca gcgttgccca cgccgcgccg actctcttcc 600 agatgctgcg tgactcgggg ttcgtgctgg gggctttcga gatggagagg ctgtgcgatt 660 gggacctcaa atcttggtta cgtgcgattc gcgtcgtgca ggagcccttg acgattctcg 720 ccggacccgt caaacaagac gcgacgagtt ccgcgacggg ccaagacgcg ccgagcccct 780 cggcgggtcc agcccagact tcgacgacca cgccctcgcc tccacctcga taccaatcga 840 gcgtggactc cgacagcagt ttcgagtcgc ccaagcgcat gcccatgaac cggccgccgc 900 gcgtcatgca gctatccgcg gcgcccacac gcacagaggt gacgaaaccc gccgaggagg 960 tgcttcccaa ggccttgaga gaatctatca tcaagctgat gcagacgaca gtgatgaaca 1020 ccccgcgcgc cgacacggcc gcaattccga cggggccgaa gccgcccgcg aatcccacac 1080 ccacggtggc tcgcccccag gaggcagcgg atgtcgccat ggagtcggtc agttcgcgtt 1140 cttcgacgag gtccagaact cgacgcgacg cggacgaccc cgatgacctg ttcgacttgg 1200 acatcggagt gccaagaacc acggccgccg tctcgacggc gacagccggc ggcgtagccc 1260 tcgcccgcgt acgcctctca gcatcttcca agctgaaaga gttctcggga cgggacgcca 1320 gcgaagagaa agccagactg tggctcaacc gtctgaagtc cgccgcgcgg cgcgacggga 1380 tggcgggcga agaagtgtgc gggcagttca gcgatctaat gagcggccct gcgcgccaat 1440 ggtatctcca gttgcccagg aaggtcaaga aatcatggac cgagctgatg gagcaattcc 1500 gggtgcagta ctgcggcaag ggcgtatcaa tggccagtcg ctactaccat gcggctcagc 1560 gacccgacga gacccctctg gattacttgt accggctcaa cgtcgcgggc ttgagggcca 1620 acatcccata cgccgagggc acgactgaaa agaagcgcga acacgccgag catttcatcc 1680 ggacggtgga cacgcaggag gccgaactcg cctcgcgtct cacgctgatg gaggtcgccg 1740 actccgaggc gctggagaag aagctgcgtg cccgacaacg tggattggct caccagaaaa 1800 agacttcctt cggctcgaac aagttccgcc aaaggcgccg accccgccga ctcagccggc 1860 gcgcgccgtg catgcgattc acttcgcgtc ggacgagtac gacttggaac gcgaaagtcg 1920 cgacagcgac gatcgccagt acgaccaaga cgaggcggac gaagaacgcg ccaagttgtt 1980 cgtcgcggga caggccccgc cggaagagcc ggcgcgtcgt aacttcgatc ccgacgactc 2040 gggacgcgac cgcccgcggt gccgccactg tggttcacgt cgccatgtcg aaggagactg 2100 ctggaagttg ttgacgtgtc agaagtgtgg tggccagcac ccgacggagc gatgcttgag 2160 gatgtgcaag gcctgcggtg acgtgcacga agccggagaa tgcccgatgg aggagttctt 2220 caaccaattg cgccagtggt ttgacccgaa taaacacgcg ggaatgctgc cgccggccgc 2280 cgagaagatg ttaaactagg acgctcgctg gcttggaaac cagtacgaga cgagcgacct 2340 gttttcgtct atgcatatgt gaccaagaag tcgcgagaag tggttagtga gagcccgact 2400 tccctgaatg ataatacatg tgaaaacaac ccggaacgta ccacgcaagg acgcgcgccg 2460 cgaatctcgg cggtccgacg tacgacggac gacgagtttg cacgtgaacc acccctggac 2520 gagatcgact tgcaaccagg agagcgacgc ggatactgga aacattacgc gccgcacaag 2580 tggtacaagc aggcctagat tcatggaaag ctgaacaacc gccgtgctgt gttattgctc 2640 gacacaggtg ccgaggtgtc catcctggac accacctttg ctcgtgaggt aggctgcctg 2700 attgacacgg agatcacgca agagtgtgtg ggaattcgtg atgcgacata ttacacggtg 2760 gggagaacca gagtcaagat taccttggct gggaacttgg tgtactacat gcacctgtgg 2820 gtcgacgact tggtcggcca acacgcaatc ctgggaatga acttcatggt gcccgctgga 2880 gtgcgcatcg acactgcgga tggcgcggcg tgcctccccg acgaggtgca tatccagatg 2940 atcggacgaa gaccgctata cggcgcacgg atgcacccgg tcaacgtcaa gacgcctgtg 3000 aggctcgaac caggagacac gcatgaagtc ttgctgaggc cggatcgaaa cgcgccgttc 3060 ctgtgggtga caagggcaga gtcgtgggtg actacctttg tcaaggggag agtcggaaag 3120 gaaacgtacc tgcgtgtcac gaacatcgga gacgcagcga taaccctcga cgcgcatgaa 3180 acgcttgggt ggtggacgcc gtctgacggc cagcctcgga accgtggatt catccgactg 3240 ggctccaccc ggtacaagca gtggcagaat ctggcgtacg gcgcgacgcg tgacgcggag 3300 atgaactgga tcccagtcga gctcgacgga ccgatgacgg atcgcccctc atacccgacg 3360 cctaaagcca tcttgcgccc ggagtcgaga caactcggga cgcgacgcgc cgtgacccca 3420 gtgttggcgg ctgtcgcgga agcgccgaag ggaagggggg tagacttgcc acccgacgac 3480 cacaagccgg atacggacga ggaggcggtg gaaagcgaac ccgatatgcc tccgactgtg 3540 gctggaagcg ctgcgatgga ataatcgccg gagtcggaac tcgccgagcc aaaactcgac 3600 ggaccaaacc ccgccgagcc gaatttcgac gaggcgaaac ctgatgagca ggaggaagac 3660 gacgcggtcc tcatccacga ggggtccgac ctcttcgtag aggatctcga gtctgagatg 3720 gcagtgctgc cagacgtctc gctgaccgcc gaggtaaaga tcgaggactt gaaggtcggc 3780 atgccgactg gactcccgcc cgaggaagcc gcgagacaag aaacgcggct acgccaaatc 3840 atctggaagc gacggaagtg gttgatcggc aaaggcaacg ccttgccgac ggccgccctg 3900 ggtgttgtct gcgacatcga cgtgggcgac gcaaaacccg tcgcgcaacg cgtccggaaa 3960 atcccgccgc agtttcgaga gaaggtcgcc gacttgatca aagggctgct gagcacgagg 4020 atgatccaga agtcgaagtc gccgtgggcg tcgcccattg tcgtgatcat aaaggagaac 4080 ggcgtcgata tccggctttg cattgactac aggctcatca acgggctgac acagttgatg 4140 atttacccca tgccgctcgt caacgacttg ctcgaagact tggacaagta tctgtggtac 4200 tgctccctcg acatggcgag cggcttctgg gtcgtcccca tgacagaccg ggcccggctc 4260 acctcagcct tcatcacgcc gatgggactg tacgaatggc tgcgtatgcc gttcggcctg 4320 tgcaacgcgc cgcagattta ccaacgcttg atcgacaacg cgctctacgg gttcatgaag 4380 ctgtccccgg atggcagcac tcgggacgtc tttgaagacg gcgaaccggt gaagccaggt 4440 attcactccg ttctgggacg gaggtcgtac atcgacgaca tcctcatcgg gggcacgtcg 4500 tgggacgacc tgtgcgagaa ggtcgaacgc ttgctggatg tctgcgagca gtggcacttg 4560 tccatcagtg tcgagaagag cgagtggggc atgtccaagg tcgactacct gggccaccga 4620 gtctcaggac tcggtgtcga ggcgaagccg aagaatctgg agtcgctgac gtcgctcgag 4680 ttcccgcgca cgatcaaggg cctgcaaccg ttcttgggta gcctcaatta ctaccaccgg 4740 ttcattgcag actttgcggt gtatgcaacc gcgctgtatt cgctgacgga gaccgacttc 4800 agcgagtacg tcacgcatcc agaagtccgc ggacatgaga agtggacgca cgcgacgcgc 4860 gccttcgacg cgctgaaggc aaaactcgcc gagaccccaa tgttgaagca cttcgacgcg 4920 aaccgagaat ccgtcgtgat cgtgtacgcc agcgactggg ccatctcagg ggtgctcacg 4980 caggtccacg acgaagtgta catgcctgtg aagttcacca gtcgtacgtt gaagcccaac 5040 gagctgaact acgacatcgt cgaaaaggag atcttggccc tgttgcgcgt cttaaacgag 5100 tgctacacga tgctagcagg gagaccggtc cgcgtcttga cacgtcacgc gacactcgcc 5160 tggttgttcc ggtccaaagg actacagggg cgactgtcac agtgggccgc gatcctctcg 5220 ccgtggaagt tggaaatctg ccgatccatg aagggagaag aagaactcct cggcgcgctg 5280 gccgcgagca ttaccccgcg agccttcgtc gacgcggcgc tagaagagat cgccccacgg 5340 agacgggcgt ccaggattgt agtcattcca gtccccgacg tggcgcgcga cgaggtcttg 5400 cacgttttga gatttgacgg atcggccaag gcgaagcgag aaggcggagc atacagtgcc 5460 gtcatttggc agctgccgaa ctgggagatc gtgcgcgccg cgtcgggata tgcgacggac 5520 ctcacggtca acgaggcgga ataccgcggg ctgctgctcg gatgttctct tctagaggag 5580 cttgacgacg tcacccgact cgtcgtatgc ggagactcca accttgtcat caggcagatg 5640 cgggacgaga tggactgcaa ttccccgggg ctgaagctgc tgcgacaaaa gacgcgaaac 5700 gcactccagg catggccgcg ccacgaactc ttccacgtac gacgagactg gaacgcgagt 5760 gccgacatgc tggctggaca agctctgcag cgtcaaggag gccgcaacgc gcacagcccc 5820 gaagagattc aagatctgaa gacgctgaat cgcttggaag aagtcatccg accacgggca 5880 tcgagtcccg ggatggcgtc tccagccagt cccgacgcgg ataatctcga cgcggaaaac 5940 ctcgactcgg aaaacctcga ctcggaaaat cgcgacgcgg aaaatcgcga cgcgaaaacg 6000 cgcggcgcag atgaccccgc cgggaaggcc atggacgcgg gacgcgggac agcacaagtc 6060 ctcgctgtga cgacgcgctc ggctgccgca cgcacgacaa cacgtagggt ccgacctcca 6120 gaagtcctgg aggagctggt ggtgcaacga ctgcgcctgg accgcatccg cgtcgctcag 6180 gacgaagagg tctggatcgt caacctcaag aagtatctcc gtggcgacgt cggagaccta 6240 tctcggcgcg aggtgaagaa cttccaaaag cttgcgcctc agtacgaaga gggtgaaggc 6300 gggctgctca actaccagcc gagacgcgac gattccgccg aggatcgcga tgtgatgatg 6360 aagctggtga tccgggagac tcttcgggaa gatgtacacc actatcacgc gagcctggaa 6420 ggcggacacc agggtattag ccgcacgtac caacgcgtga ggcgccactt ccattggcca 6480 gggatcttca gaagcgtcca gcgctacgtc ggcgaatgca ccgactgcga gacgggaaag 6540 ggtcggccga ccatccaggg cgagtcgccg ggcaacatcg tcgcgacgta cccgttccag 6600 gtcattgcca tggaccatat tccgtcgttg ccggcatcct acaaaggcaa cacagagctg 6660 ttagtctggg tcgacctctt cacggggttc gtcgtggtca aagcgaatgc gtcacgaacc 6720 gcgcagacgg tggccgaggc gtacgaggag gcggtgttca ggcgcttcgg cgcgagcgag 6780 gctatccgcc acgaccgcga gccgggcttc atgtccgact tcttcaaggc gttcagcaaa 6840 ctcatgggtc agagacagcg agcgacgctt gcttatcgtc cccaagccaa cggtgctgca 6900 gaacggatgg tgcagacggt tacaagagcg atcaagatgt acatcgcaga cgtcgaccaa 6960 cgcgactggg acgaatacgc cgagcgtctt accttcgcgc taaacacgtc gcacgaccgg 7020 acgaggaatg aaaccccgtt cttcttagtg cacggctggg atcctcggtc gacgctggaa 7080 gcgacgctgg ccgtcgggaa cacgtcgacc cgggacgccg aggcgaggcg gtggaggctc 7140 cgtattcagc gacactacaa ggtgacaagg gcacaagcgt tggagttagt ccgagaggcc 7200 gtcgacgaga gagcgcgtcg acaaactgaa aacgcgacgc gacatgagat cgcgacgggc 7260 tcgcaagttt ggctgtacct ggatcgggtg aagccggggt atgcgcgcaa actcgcgcac 7320 atgtggcacg gacccttccg cgtcgccgag ctggtcagcg cgttcgcagt gcgcctcgag 7380 acgacgggta cgccctatca gctgtacccc gtcgtccaca tctccaagct gaagcccgtc 7440 cgggaattcc cgtcgcgacc cgcgacgcag ctgacggtgc cggccgagga gcgcttcgac 7500 ttcgacgagg agctcttgcc cgaggatagc tgggaagcca cgcgcgagct ggaggacgac 7560 gtcttcgagg tcgagaagat cgtgaatgtg cgcgaggggc gggctacccg gtatgggcgc 7620 acgcgacgcg agttcgaagt caaatggaaa ggctacccgg acacaacgtg ggtcgacgag 7680 ctcgatctga attgcggcgg gttgctgtac gacttcctgc gccagcgcac gggacgcaac 7740 cggttcgagg cgatgcagtc gcacgagaat gcggaggcgg tggagcctgg tgggtgagcg 7800 cccacgggtg cgactaagtc ggcggggggg ctgccgacgg gaggactggt gggaagcctc 7860 gactctggga atggccggag cgagggattg gatgagggaa gtgaggagga ccagcctgtt 7920 gctgaagatg ggacggcgga gggccgtctc ataaaagatg tggagaagtg gaaagaaaca 7980 agggaaaaga tcaaggctac gtgttgaagt tacggctaca acaactaaac gcaacggact 8040 gcaacgatgg gccaagactc aaacctgctg gacaaactta cctgcaagac gcggcacatg 8100 gaaggctggg tgatcgcgcg tcactcggca gcgtacgttg gcgtccatct cggccacagt 8160 gagcggcgtc cgatagaacc ggcgccagga ctcctgcgcg tcgatgtcgc cgagcgcggc 8220 ttgcaacgtc gtgtgctgga ggcctggata ccaccgtccg atcgacgtgt gcgcggacgg 8280 aaagtgaagc accattgggt ccagcaagag gtccatgtct gcgagccctt gctggaacag 8340 cccaaccacc agctgcaaca ggctgttgag gtggttgccc gcgtgtgagc gacgcgagtt 8400 gcgcgccgtg cgccaccttt tccacgccgc gccctgcacg aagagctcat gggtggcctc 8460 ccagtacgcc tgagcccagt gctcgatgtg gtgccggagc cgacgtagga atgggcggaa 8520 cgccgcgtcg ccggacgcga agagaagcgc ctcagcggct tgagcgaggt agcgccacgg 8580 cagagtcgcg tatagcgcgt cgacgttggc cagagtcacg agggcgcggt tccagttcgc 8640 aggcgcgggg ggaacacggc gcggaatgat ccagccgggc ggcggcagaa agagcgttcc 8700 aactcctgca cggtgatgag atgaaggcgg agacgtcgta cccgcttggg cctaggagcg 8760 tagcgaggct gccgccagcc agacggagtt ccggcaggcg gaatcacagg gtcgaagaag 8820 ggcgccgccg gagcactccc cgccgagccg ctggaggcgg tgctcgagga cgaggcgcgg 8880 gacgacgagg aagcggacga gtcgttgcca ctggagtcgc ccgaatcgcc cggaccagtg 8940 cctggtccag ctccggctgc cgcacggccc ctcgacgagg agtgcgtcgg ccgtgcagga 9000 gaagagtgac gcgaggccgc cgaccccgcc gagtgcaccg accccgccgc gtgcgccgaa 9060 cgcgttgagc cggccgaacg cgtcgacgcc aaggagggcg agcgagaacg cgagcgcgag 9120 cgtggaggcg agtgcgaacg cgaacgagag gccgagcggg aacgcgaacg cgaagcagaa 9180 cgggagcgcg ggggtgtccg ggaacgtgac tgcgaacgtg gaggcggacg cgccggcgac 9240 cgtgagcgag actcggggct atgcagccgg cggcgcttgg actgagctcg ccgcgcttgg 9300 tcctcgctgt ccgaagactc ggagccgaag agcgacgcgt cctctcgtgc gcgcgctgca 9360 gctgcagcgg ccgcggagga cgtagctgca gatgaggcct gcgcagcggc gttgtcggag 9420 gccgcagtgt cggccatgat agagagccgt cgactacgtc gaaggggcga agaaccagac 9480 gacgtagcgg acgccactcc tgacggccta gacgcgcgtg actgagaacc cgaacgactc 9540 gacgcgccgt gtcgaggtcg ccgaaaaccc gacgaggacg aggcagcgga cgaagtcgga 9600 acaggacggg agcccgaagg acctgctgga ggggaagcgc cagtcgtcga gcccgccgtc 9660 gaagccgacg agtccgcccg ggcaccagag ctcgacgcag ttggagcagg aacaggaacc 9720 gcggatgcca caggaactgc tgcggacgta ggaatagcag gggggagggg gatcgcaccg 9780 tcgatctccg ccgtgaaagt ggcttcgagt cgcctaacca ggtcagcggt gtcgatctgc 9840 ccgcctacac gcgttacgac gccggcgaga cgatcagcaa gctcgtcgcg cacccgccgc 9900 gccagctctc ggccccgacg cgcgtctcga agcatccgac gccaagccac agcgcgttcg 9960 tcgcgctctc ggatggccaa gtcgcgctcc tcctccagct cggcgacgcg agcgctgaga 10020 cgatgggtct gggcgccgac tgctcctcga cgctgctgag acgaccgccg cgtggacagc 10080 cacccagctc gatactgcgc cgcgcgagat gtggcgcaaa gttcgccggc ttgagcccgc 10140 gccatctcgg actcggcggc cacacggaga gtcgtagcag tagccactga ctcctccagc 10200 tcgtgaatac gcgtcgcgcc gcggcggagc tcctcagcgt gggccactaa gagcgcgttg 10260 acgcgccgaa ggccgtcctg cagcgggacg ttcaggttct gggccgcctc gatctccatg 10320 cggctctgag aaagcgacgc acgggccgcg cggagctctt cgtcgacagg ggcgcgctgc 10380 tgctccagag cggtcaaggc ctgacgagcc tgatctctct cggcgacggc agcgtctcgc 10440 cgctgctcaa gggcggccac ggcttgacgt gcccggtccc tctcggtgac agcagcgtct 10500 cgctcgcgtc tcagggccgt ggaggcgcga cgcacttgat ctcgcatgtc gagggccccg 10560 ccacgctctt gctcgacgac catgagaacg cgggtcacgc ggtcacgctc ggcgagggcg 10620 gcatcgcgct gctgctcggc agtggccacg agctgccgca tgtgatctcg ttcagcttcg 10680 gcggcggcca cgcgcgcttg gacaggagcg agggcggctt gggcggctgc gaggtcgacg 10740 cgaaggtcgt cacgctcggc gcgcgcgtcg tcgcgctcgc cttgtccagc aaacagccgc 10800 gctagcgaca cggtggaggg aggcggcgta gcaggagcgc gtgcgagttg ggcagtcaag 10860 tcagtgacct agtttcgtgc cgcccggagc tgagcttgaa gatcacgata ttgctctgtc 10920 gaggagcctc gctcggcgcg gagtagagcc tcggcagcgt cggcgcgctc agcacgagcg 10980 cggaagtcgg ccactcggtc ctccaggacg gcgtagtccc gctcagcgtg ctcccgggag 11040 aggagcgcct gctcgagccg gatcatgcct tggcgataac cctcgcgagc acgatgcaag 11100 atcgcgagat tgcggtcatg cagcacggac gcgtgagtag ccaagcccgc attgtgcgct 11160 gagacgagtt cgtactcggc gcgcagctcc tggttctcgc gctggagagt gtgcgcgtcg 11220 gcgacaagag cagtcaccga gtggacgggg gcgcctgaag ccggaagctg gacttggggc 11280 gcgacgggga ggcgaggacg atgcgcgccg agggcacaaa ccgcgcagcc agcggcctcg 11340 aggtcgtcgg tgtcaagctg ttcttcctcc aggtcgatgt cgttgacgtc gacgtcgtgg 11400 cggcgagcca tgaagcttgg agtaccgcga agcggactgc gagggcagaa aacgcgatgg 11460 tgtcgagacg aagcgaaggc gcggggcagg ttctgcgacg acacgagtgc gcgtgcgtgg 11520 cagcgagacg aatg 11534 // ID Copia-39_PIT-I repbase; DNA; PLN; 4032 BP. XX AC AATU01011788; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-39_PIT_; KW Copia-39_PIT-LTR; Copia-39_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4032 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01011788; Positions 5419 1388. XX CC Positions [1429-1950] - Integrase core CC 'GAGT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 397..3246 FT /product="Copia-39_PIT-I_1p" FT /translation="MSLYVDVGGDMLKHVRQTRLMLAELECYKVVLTDAEK FT KSNFLQSLGPDWNGYIGSLESCASMEELLIKAAAEARRRTTQTQRGKRGGT FT QAVRSGNAFAAATHGKPGAKKGKCFNCGKYGHFKNECKTKQIGGAFGHAAT FT SGQDDEEGEESGFSFQVSSSAESDWIIDSGASSHMTGSRGLLNGLNKMDND FT IVVTTASGMKLSATHRGTAHLPLVSGSTCTLDNVLYVPGLKRNLVGLSKVG FT AAGLTATFNREHCVITSGHDKLLATRRTSGLYVVSPLSTGNCAEVEYASGD FT QLDDLATWHARLGHLNARDLKALLKAGDVTTRSSQLLPCGSCAAGKLASVS FT FPEKKPRKLKRGQVVIAIDYVGPMETTSRDGYTGMVSMMIEPYHLASVFPV FT KDKSSATHALRECIANLKVMIPSARVAVLKSDNAAEYVGGEIADFCNENMI FT AQEFSTPYTPQQNGKVERSNQVVVEMARAMMQAAGLGKRFWSDAVLTAAYI FT RNRCPTKVLGDKTPFEAVTGGAPVLSRLRVFGCDAEVLLPKSQRHKLDAKT FT IKAIFIGYEKSGAYRFWVPSGHGGSGRAIVSMTAVFFESSVPRNTTVTLNG FT ELPTQVYDEPVDGVAPSRYLEAIQEDIEMEDSDGSQLVSDADGSQPLSDLP FT ERHLIDPRAEKQPTRRSTRIKKKSVRRLDYEQSHNAEETALVSELSDPLTL FT QEAMARPDAEQWRQAINSELDSLRRNGTYEEVFAPANVRPVQTKWVFRRKT FT LPDGSLDKYKARLVAKGFTQQYGVDYTETFSPVVRHDSIRAILALAVQLDW FT DHLQLDVQTAFLNSNLAETIFVTPPTEGNDKTVWKLRKALYGLKQASRAWY FT ETVTKFLCETGFVQCQSDSCVLVKRTTDSIVIVLLYVDDMLIFSNLASELA FT AFQASITSRFAINKCDASSSFVGMELGWNKDGDVLTIVSRSTPPPL" XX SQ Sequence 4032 BP; 965 A; 1042 C; 1207 G; 818 T; 0 other; actcgacagg ttatgagtgc caacaccacg accgcgttca cgaccaagct tcgcaagttc 60 gacggaacgg gctaccgagt ctgggcgcgg caactccagc tttacctgga ggtgaaggac 120 gtatgaagcg cggtgctgaa gcccgcaccg acgttgctcc agctcgagaa cgaagagtcc 180 ggccaagccg atcggccgtt acggcagcaa gagcgaccgc tgcaccaact ggagatgcag 240 cagaagctgg ccatgaccat cattctggca gcgctgacgg atgatcaagc tgcgttggtg 300 gctgatcttc agcacccgaa ggccatgctg ggggcgctgc agaagacgca tcgtcacgtg 360 tgtgacacaa ccgtttaggc tctcaagcga gagtacatgt cgctttatgt cgacgttggt 420 ggcgacatgc tgaagcacgt ccgccagacg cgcctgatgc ttgctgagct ggagtgctac 480 aaggtagttc tgacggacgc ggaaaagaaa agcaacttcc tgcagagcct tggacctgac 540 tggaatggct acattggatc gctggaatcg tgtgcttcga tggaggaatt gctgatcaag 600 gcggctgccg aagccaggcg ccgcacgacg cagacgcaac gcggaaagcg tggtggaacg 660 caggctgtgc gaagtggtaa tgcatttgct gctgctacgc acggaaagcc aggcgcgaag 720 aagggcaagt gcttcaactg cgggaagtac ggtcacttca agaacgagtg caagaccaag 780 caaattggtg gtgcctttgg ccacgctgct acgtctggac aagacgacga agaaggtgag 840 gaaagcggtt tttccttcca agtcagctcg agtgcagagt ctgactggat cattgactca 900 ggagcttcga gtcacatgac gggatcgcgt ggtctgctca atggcctgaa caaaatggac 960 aatgacatcg tggttacgac tgcgagtggc atgaagctga gcgctacgca tcgcggaacg 1020 gctcacctac ctctcgtctc tggcagcacc tgcacactgg acaacgtgct gtacgtccca 1080 ggcctcaagc gcaatcttgt gggcttgagc aaggtcggag cagctggcct tacggcaacc 1140 ttcaatcgtg agcattgtgt catcaccagc ggtcacgata agctacttgc tacacgtcgc 1200 accagtgggc tgtatgttgt atcgcccctc agcacaggca attgtgctga ggtggaatac 1260 gcgtctggag accaattgga cgacttagct acctggcacg ccagattggg ccacttgaat 1320 gctcgggatt tgaaggcgtt gctgaaagcc ggtgatgtga caacccgaag ctcacagctg 1380 ctcccttgtg ggtcctgtgc agctgggaag ctggccagtg tgtcatttcc ggaaaagaag 1440 ccgcgaaagc taaagcgcgg gcaggtggtg atcgctatcg attatgtggg gccaatggaa 1500 accacgtcac gggacggtta cacaggcatg gtgagcatga tgatcgagcc ataccatctc 1560 gcctcagttt tccctgtcaa ggacaagagc tcggccaccc acgcgctacg cgagtgcatc 1620 gccaacctca aggtgatgat cccgagtgca agagtggcgg tgttgaaaag cgacaatgcg 1680 gcagaatacg tgggaggaga aatcgctgac ttctgcaatg aaaacatgat tgcacaggag 1740 ttcagcacgc catacacacc acaacagaac ggcaaggttg agcgcagtaa ccaagtcgtc 1800 gttgaaatgg cgcgagcgat gatgcaggct gccggtttgg ggaaacgctt ctggagtgac 1860 gcggtgctga cggctgcata catccggaac cgctgcccaa cgaaggtact tggtgacaag 1920 actccgttcg aagcggtgac tggcggcgcc ccagtgctga gcaggcttcg agtatttggc 1980 tgtgatgctg aagtcctact gccgaagtca cagcgtcaca agctcgacgc aaagaccatc 2040 aaggcgattt tcatcgggta cgagaagagc ggcgcctacc ggttttgggt acccagtggt 2100 cacggaggca gtgggagagc tattgtctcc atgactgcag tattttttga gtcaagcgta 2160 ccgagaaaca cgacggtgac gctgaatgga gaactaccaa cgcaggtgta tgacgagcca 2220 gtggatgggg tcgcaccttc tcgctatctc gaagcgatcc aagaagacat cgagatggag 2280 gactctgatg gcagtcaact ggttagtgac gcggatggca gtcaaccttt gagtgacttg 2340 ccggagcgcc atctcattga tcctcgcgcg gaaaaacagc caactcgtcg cagtacgcgc 2400 atcaagaaga aatcggtgcg taggctggac tacgagcagt cgcacaacgc ggaggagaca 2460 gcattggtca gcgagctaag cgacccgctt acgttgcagg aagccatggc tcggcccgac 2520 gcagaacagt ggcgtcaagc aatcaacagt gagctggaca gcctgcgtcg caatggcact 2580 tacgaggaag tgttcgctcc agcgaatgtg cgtccagtgc agaccaaatg ggtattccga 2640 cgcaagacac tgcctgatgg atcacttgac aagtacaagg ccaggctggt tgcaaagggg 2700 tttacgcagc agtatggcgt ggactacacg gaaaccttca gcccagttgt acgtcacgac 2760 tcgatccgag ccattcttgc tctggctgtt caactggact gggatcatct tcagctcgat 2820 gtgcaaacgg cgttcctgaa cagcaatctt gctgaaacca tcttcgtcac tccacccacc 2880 gagggcaacg acaaaacggt atggaagctt cgcaaagccc tgtatgggct taaacaggca 2940 tcacgcgctt ggtatgagac cgtgaccaag ttcctgtgcg agactggatt cgtgcaatgc 3000 cagtcggact cctgtgtctt ggtgaagcgg actactgaca gcattgtgat tgtgctactt 3060 tatgtagacg acatgctaat tttcagcaac ttggcatcgg agcttgctgc atttcaagct 3120 agcatcacca gtcggttcgc gattaacaag tgcgatgctt caagcagctt cgtgggcatg 3180 gagctaggct ggaacaagga cggtgatgtg ctgacgatcg tcagcagaag tacgccgcca 3240 ccgttgtgaa gcggttcgcc agccatggtg acaggtcgca accccggaca ccaatggaca 3300 gcaacttcca acgccaagta gccgacgaca ccgaagtcat tgatgagtcg atccgtcctg 3360 aagtcggttc actgctgtac gcatcaacgg ttagtcgacc tgatctcgca acagcagttc 3420 gcctgatcgc acaagagacc gagcagccga cccgcactgt acaagatgca gttaggcgtg 3480 tacttggcta catcgcgcgg acggccgaca tggggattgt ttaccgtcga tcttctcagc 3540 gtaagctgca gctggaagtg tattgtgatg ctgcatttgc ttgcgagcgc gagcgcaagt 3600 cggcgacggg attcgttata ttcctcaacg ggtgctgcat tgcatggggg tcgaagaagc 3660 agccgattgt tacgctgtcg accactgaat cagagtatgt tgctctagcg cacggagcca 3720 aggagtgtat cggactcaag cagctgctgt tcgagttggg atttgacgtg ggcaaggtga 3780 tagtccacga ggacaaccag gcagctcagc atgtggctga aggcaagggc gtctcgcaac 3840 gatcgcgtca cattgacctc cgctatcact ggattcgcga gcaagtgcag cgcgaaacaa 3900 tcaagattgt gtactgttcg accgcggtca tggttgcgga tatgttcacc aagccgctgc 3960 cacaagcaaa gttcagcttg ttcgtcacgc gacttggcat gtgccgagtg ggagtgtcgg 4020 aacgtgctac tc 4032 // ID RT_PT repbase; DNA; PLN; 243 BP. XX AC D12849; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus thunbergii Ty1/copia-type retrotransposon RT_PT, reverse DE transcriptase. XX KW Copia; LTR Retrotransposon; Transposable Element; RT_PT; KW retrotransposon; Ty1/COPIA superfamily; pol gene; KW reverse transcriptase. XX OS Pinus thunbergii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-243 RA Hirochika H. and Hirochika R.; RT "Ty1-copia group retrotransposons as ubiquitous components of RT plant genomes."; RL Jpn. J. Genet 68(1), 35-46 (1993). XX DR Genbank; D12849; Positions 1 243. XX SQ Sequence 243 BP; 62 A; 50 C; 71 G; 60 T; 0 other; gcgttcctca acggagtcat tgaggaggag gtgtacattg agcaacccga aggctttgaa 60 gtcttcagca gtgagtcgca tgtatgcagc ctcaagagag cgctgtatgg gttgaagcaa 120 gcaccacgtg cttggtacac acggatagac agctatttca caggacttgg attctccaag 180 agcgaggtgg atcctaacct ataccagatt gtggtggagg gtaagttgct tatcattgta 240 ctg 243 // ID Ambal-1_FCy repbase; DNA; PLN; 9757 BP. XX AC . XX DT 26-JAN-2010 (Rel. 15.01, Created) DT 26-JAN-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ambal-1_FCy is a family of Ambal non-LTR retrotransposon - DE consensus. XX KW Ambal; Non-LTR Retrotransposon; Transposable Element; KW Ambal-1_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-9757 RA Kapitonov V.V. and Jurka J.; RT "Ambal, a novel clade of non-LTR retrotransposons from diatoms."; RL Repbase Reports 10(1), 103-103 (2010). XX DR [1] (Consensus) XX CC Ambal is a novel clade of gigantic non-LTR retrotransposons CC identified in the Fragilariopsis cylindrus and Thalassiosira CC pseudonana diatom genomes. Typical Ambal is about 10-13 kb long CC and codes for two ORFs. While classification and function of the CC ORF1 protein are not clear, the ORF2 protein contains three CC conserved domains: apurinic endonuclease, reverse transcriptase CC and riboniuclease H domains. Usually, 5' termini of Ambals are CC composed of family-specific microsatellites. Ambals are flanked CC by target site dupliations (from 7 to 20-bp). CC The ~100-bp long 5' terminal portion is conserved in diverse CC families of Ambals (e.g. Ambal-1_FCy and Ambal-2_FCy, Ambal-2_FCy CC and Ambal-3_FCy). Most likely it contains the pol II internal CC promoter necessary for retrotransposition of Ambals. The diatome CC genomes contain also families of short non-autonomous Ambals that CC share with autonomous Ambals both the 5' and 3' terminal portions CC (analogously to Ingi non-LTR retrotransposons), e.g. CC Ambal-3N1_FCy and Ambal-1N1_TP. CC The Ambal-1_FCy consensus sequence was derived from 3 copies >99% CC identical to each other. Ambal-1_FCy is characterized by ~15-bp CC TSDs. This family can be still active. CC The consensus sequence was derived from sequence data produced by CC the US Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 126..2954 FT /product="Ambal-1_FCy_1p" FT /note="unknown." FT /translation="MVIMSNTIQPGMYLDNIDNRSDNRSIGSRSSFNRNEI FT PAKNDKDMTLRKITTKSTSNNNKTTTDVEGWTTTSPGKKKPKNSNSTVAST FT ESIITTIDGNFDSIEAGTSNRIYVTSPGRKNKCNIPDDSRQQTELEFIPTI FT MAVKRKEKVKDKEQDNGEDNDTSKTNDQDNGNTMEDNREGKDDNKEDKNKT FT NSKNDSSSNDSNNRGQGGRGERGGGRKGRGGRGGIERNLIPKTEWETYNFS FT ISFNPKTMNNKDPDTEFQALLSEMMKKSPGITFHATNEDMFPKPKSFSNIQ FT GYPQTEAAFKDFFEVYENKGMTIYKIFIQATMHYNELDLRNSLLNYLRSNN FT LWMSSDLISENVDEMIGYINYGHDKMVWRPECEKKINNGINALIQSGSIPQ FT ALRLKIDGLKKDIKIRVAAGTFRGGPRNDPVMCEGLLLRTTKAQARASMEL FT LGLLDDNVLGEFYSIIPKGTDKEIGPQLYGDLLRMNNDMLNTLRAITVVNW FT PEELFLELYNPALDVPGTVALRVDTLLMNAWKCVAIERTTETETRGKYLLL FT FQEEDMEKAKALISNLIDDFGRESSSNCAKIALEKFNQFPEFDSIQRVSQS FT VQAKASKLKEMLQNAAAQRTSKTPKQIQQPRFQFHVAKQLQKQLHLPTQKS FT YSNIAQSSAQKKXLTIVQPAPSTAQPTTPQQQPQQATHAEQTRMTEADNTA FT QQDQTSNENGLRVRTSMNLMTQDTRTIATNHSGLSDQQTMTTMMTQITQQF FT QEMERDRITREDKQEAKRQERESKIEERRVEAQRDMYSFMKSMMMMTQNQN FT SENKQRKEANPNPIPDELTTGETEQTSALTSSITTTKSLTTPTGKRASALL FT SNTNEETNMTDIGTEAEDTETIETMSTKRNKSVSVSAKDTEEGQADDMMED FT GEENTEKRGENSSSFTDGFNNQQFQPKAIIAPGTGATQQ" FT CDS 3067..9630 FT /product="Ambal-1_FCy_2p" FT /note="Contains the APE, RT and RNase H domains." FT /translation="MIPTQTNIFRQTYERNNNDEEDKDNEMPTLQDRDRED FT SDSDDEESEDEIVYENYDEQEVAYGDNQDTLENRLFKLKEEITKISNLQTN FT NLTDSLTKTTIAFVPSRMINTERQKLKEERKENKRELLQLQKEIIKETKEV FT LKWERIQAKTRNQEMEDDEEDEDESVYEPITMPKLIKRNGDDDDDRSVDSG FT SVQTEDNTTKEPVTLRLRGGAPPEIIEIVEERFILEALDEEEAEPMGGTME FT EPKLPGMLRISGCNPNGIKAGQLKSHLQNAMDLNVDIQCYSEVNTDFLQTQ FT QRQKFYENTKSMDRQARAVWGTSQVVVENKSAFKPGGTAIVSMGKTAGRVK FT KSGTDSMGRWTYQVLDGKGGKDILIVSVYQCCKQPTNPKGVTAYHQQEIML FT SETNRVDRDPRRNFYKDLKKFLNEFLTDENNNITPIILGDWNEECKGTSTS FT QKLCDYFGFVNIFKQVHPNHKQFKTYMRGSRTIDFALAPPELANRVTNFVY FT EPFMYRLKGDHRAYYFDIGEEVLFGNKQEPVYDQAGRTFASKDPKAVTTYL FT AAAHSHLMANAVMTRIRNLLASDDPDHEEAEKLDSLMTQACEHASNQCKRR FT RKDYWNIEIHETKRNLSVWCQYKSRRVRKLSSRALIARTSALGLQMREGMP FT MEEILGQIEILRTRVKEIHKESEKKRDESLTERANMAEDAGDKEKAKAIRQ FT MKETEQKTRAFQKLKFKRGLIHNGGGISRLQVPITWPTAEEYNDETDYNLE FT DPKATDQKDASKWREVNCPKEIEFLLRLRNQRHFGQAESDRTPFTTETMKH FT KFNWSASTNEAELVLKGEYNDDELSDITRLFLDNMTRVTETEDKPKFLTMK FT EFTGKFKVWRETTSTSPSGRHLGHYKALVATIDRSLKEEERKEFVTFQEEI FT SKCYIGLINYAIKHRYSLQRWKTIVNMMIYKEHGNVKIHRLRVIHLYEADL FT SLLWGVKWREGMHTALKTKSLHQGQYGGLPGRDCTSLTYLEELRFDYSKLT FT RYPVANFDNDAAACYDRILCAIASLAGRKYGIHKDVIFIHAQTLEEAEFKL FT KSSLKVSDTSYRHCVKFPIHGTGQGSSNSPTIWCFISSVLFQCHNERASGM FT LFQSPEGDMIVRFNMVGFVDDSTCITGGNPDDTLQELLKKMQDDAQLWHDL FT LWCSGGKLELSKCGYHVIHYDFEDSGIPRMKHNPGESITLQNEKGEPISIK FT SKNIYQTRVNLGHAKAPSDSCNTEFERTLKKAVKIGEAITQCGGTRAESKM FT LYRAVWKPAVEYILPQSFLSKKQLQKIEKASLPKIYAKCGYNRNTSRAVLA FT GPIELGGGGFTPLYVTAGTGYVTHFLKNWRTPTEDIGKQLRIVYAWTSYQA FT GVTYPLLEHPERILDYVNGKVIPGMREYLDTIDGKIKLNNTYIRSKLRTND FT KSIMERVAEMEFTTIQRERINCVRMYLGVMYLSEICNEDGKSLQKGIEDNK FT HNKTTYTVSLTRPKQQKPNSYSWKFWKKAIRSFTTDDKKLELELGSWTNQH FT SKSGKWESYQSNIDNNIYHHCSNKEDNHQYWEVYERQGYQLTLIDEMELDE FT FKIRNGTPIQIKSLANGMKYGEMTAVIVKDKRTQNAYGPDVSWDRFIQAQP FT EWVRVLLEDVHFFSEDGYSNLWEIVACMEKHKYLLAVSDGSVKFHDMSFGW FT ILATPTGERLAAAAGPCNGRGNSLRAEGAGMLSVTMFIASIIKYLEVEPMK FT IVFISDNLELIKRLKAHKHYNDPYPNETLKSEFDVTEQIYRTTETYGIEAS FT YKWVKGHQDKNTPYMDLNLEAQLNVDADKFAGDFQMEKGKFRPLVFLLPSC FT DAMLSIRGISITSNYRKQLIRAYVEPEYIQYLQYKFQWSNEVIEIVSWKCL FT SLAIQRINRDVLITKICNDLLPTADTLCRMKYQHHDTCVLCNNHETRDHMI FT RCTAKSRIKWRNQYINAIRKKLNTMETEYAITEALCSAIAAWLEFGEVDIS FT KFPIQFANAILSQERIGWRHFFAGKISQEWLQLQENSTNKTIGKKRDCYVW FT GASVAEVTLTYFIKLWELRNEEVHGKSVEQQERTRKTKLSTDVRKLNALKD FT KARPVDMGLFHNDIEEFIDSSTAQTIATFISSHKRAIANSVKKYKAASQAG FT ATSVVQWIRGWSNNDDVIERMNTRQRKDILETDGRKKERRRRKQNSGRQRS FT IVGFLSLVS" XX SQ Sequence 9757 BP; 3936 A; 1776 C; 2065 G; 1979 T; 1 other; ttttcgtttg gaataaatta aaacgcgcac ctttgtttac acatctacta aaacatctag 60 tactaaatct acgtagaacc tacgtagagc ttcaacctat caacctctaa tttgtagtgt 120 cgacgatggt tatcatgtcg aatacaatcc aaccaggaat gtatcttgac aacattgata 180 acaggagtga caatcgttct atcggatcca gatccagctt caatcgtaac gaaattccgg 240 ctaaaaatga taaagatatg actttacgaa aaatcacgac aaaatcaacc agtaacaaca 300 acaagacaac caccgacgta gaaggctgga ccacgacaag cccaggaaag aagaaaccaa 360 agaattcgaa cagcaccgta gcatcaactg agtcaatcat cacgacaatt gacggaaact 420 tcgatagtat agaggcagga accagcaaca gaatctatgt tacgtctcca ggaagaaaga 480 ataagtgcaa catacctgac gacagtaggc agcaaacaga attagaattc attccaacaa 540 tcatggcagt taaaaggaaa gaaaaagtta aagacaagga acaagacaat ggagaagata 600 atgatacgag caaaacaaac gatcaagaca atggcaatac tatggaggat aacagagaag 660 gaaaagacga caacaaagaa gacaagaata aaacaaatag taaaaacgac agtagtagta 720 acgatagcaa caacagagga caaggaggaa gaggcgaaag aggaggtgga cgaaaaggaa 780 gaggaggaag aggaggtata gaaagaaatc taatccctaa aactgaatgg gagacataca 840 acttttcaat tagtttcaat cccaagacaa tgaacaataa agaccctgat acggaattcc 900 aagcactact ttcagagatg atgaaaaagt ctccaggaat cacattccat gcaacgaacg 960 aagatatgtt tccgaaacca aaatcgttct caaacataca aggataccca cagacagaag 1020 ctgcgttcaa ggacttcttt gaagtttatg aaaacaaagg tatgacaatt tacaaaatat 1080 ttatccaagc aacaatgcac tacaatgaat tagaccttcg aaacagttta ctcaactact 1140 tgagaagtaa taatctttgg atgtcgagtg atttaatctc agagaatgta gacgaaatga 1200 ttggatatat taattatgga catgataaaa tggtatggag acctgagtgt gaaaagaaaa 1260 tcaacaatgg gatcaatgcc ctgattcaaa gcggatccat tccacaagct ttgcgattaa 1320 aaattgatgg attaaagaaa gatatcaaga tacgtgtcgc agcaggaaca ttccggggag 1380 gaccaagaaa tgatccagtc atgtgcgaag gtttactctt acgaacaacg aaagcacaag 1440 caagagcaag tatggaatta ttaggtttat tagacgacaa tgtattagga gagttctaca 1500 gtatcattcc gaaaggaaca gacaaagaaa taggaccaca actatatgga gatttattac 1560 ggatgaacaa cgatatgcta aacactttac gtgctattac tgttgttaac tggccagaag 1620 aattattcct agagctttac aaccccgcat tagacgtccc aggaacagtc gcactcagag 1680 tcgatacact actgatgaac gcatggaaat gtgtagcaat tgaacgcaca accgagacag 1740 aaacaagagg taaataccta ctacttttcc aagaagaaga tatggagaaa gcgaaagcat 1800 taatcagtaa tctgattgac gactttggaa gagagagtag cagtaactgt gcaaagattg 1860 cgttagaaaa gtttaatcaa tttccagagt ttgacagcat tcaaagagtg tcacagtcag 1920 tacaggcaaa agcttccaaa ctgaaagaga tgctacaaaa cgcggcagca cagaggacat 1980 ctaagacgcc caagcaaata cagcaaccgc gatttcaatt ccatgtagca aaacaattgc 2040 aaaagcaact gcacctccca acccaaaaat cgtatagtaa tatagcacaa agcagcgcac 2100 aaaagaaaca kttaacaata gtacaacctg cacccagtac cgcacaacca acgacaccac 2160 aacagcagcc tcaacaagca acacatgcag aacaaacaag aatgacagaa gcagacaata 2220 cagcacaaca agatcaaact agtaacgaaa atggactaag agttcgtaca tcgatgaatt 2280 taatgacaca agacacaagg actatagcaa cgaaccactc aggattatca gaccaacaaa 2340 caatgacaac aatgatgact cagataacac aacagtttca agaaatggag agagatagaa 2400 taacaagaga ggacaaacaa gaagcaaaac gacaagaaag agaatctaaa atagaggaga 2460 gacgagtcga ggcacaaaga gatatgtact cttttatgaa atcaatgatg atgatgactc 2520 agaatcagaa cagtgagaat aaacaaagaa aagaagcaaa tccaaatccg ataccagacg 2580 aactaacaac aggtgaaaca gaacaaacaa gcgctcttac atccagcata acaacgacaa 2640 agtcattgac tacacctacc ggaaaaaggg cgtcagctct actatcaaac actaatgaag 2700 agacgaatat gacagacatt ggaacagagg cagaagatac ggagacgata gaaacgatgt 2760 caacaaagag aaataaaagc gtaagcgtat cagcaaagga cacagaagag ggacaagcag 2820 acgacatgat ggaggatgga gaagagaaca cggagaagag aggagaaaat tcaagttcat 2880 ttaccgatgg attcaataat caacaattcc aaccaaaggc gataatagct cctgggacag 2940 gagctactca acaataaagg cacttcaagt gccaatctaa agcatactcg tgaaggaaag 3000 actgcagaca atccaacaga acgatcaggc gcacaactat tagaacattc atacgatata 3060 acaacaatga taccaacaca aacaaatata tttagacaaa catacgaaag gaataacaac 3120 gacgaagaag ataaggataa tgaaatgccg acactacaag acagagatag agaggatagt 3180 gatagcgatg atgaagagag cgaggacgag atagtgtacg agaattacga tgaacaagag 3240 gttgcatacg gagacaacca agacacattg gaaaatagac tatttaaatt aaaagaagaa 3300 ataacaaaga ttagtaatct acagacaaac aatttaacag atagtctaac aaaaacaaca 3360 atagcattcg taccatcaag aatgatcaat actgagagac aaaaactaaa agaagaaaga 3420 aaagagaaca aaagagaact gctgcaactg caaaaagaaa taataaaaga aacaaaagaa 3480 gtattgaaat gggaacgtat acaagcaaaa acccgaaatc aggagatgga agatgacgag 3540 gaggatgaag acgaatcagt gtatgagcca ataacaatgc ctaagttaat caaacgaaac 3600 ggagatgatg acgacgaccg atctgtcgac agtgggtcag tgcaaacaga agataatacc 3660 acaaaggaac cggttacatt acgactgaga ggaggagcac ccccagagat aatagaaata 3720 gttgaagaga gattcatatt agaagcattg gatgaagaag aagcagaacc aatgggaggc 3780 acaatggagg aaccaaaatt accaggaatg ctacggatat ctggatgtaa tccaaatggt 3840 atcaaagcag gccaattgaa aagtcatctc caaaacgcga tggacttaaa cgtcgatatt 3900 caatgctact cggaagtgaa caccgatttc ctgcaaacgc aacaaagaca gaaattctac 3960 gagaatacta aatcaatgga cagacaggca cgagccgtat gggggactag tcaagtggta 4020 gtcgaaaaca aatccgcatt taaaccaggc ggtacagcaa tcgtatcaat gggaaaaaca 4080 gctggaagag tgaagaaatc aggcacggat tcgatgggaa gatggacgta tcaggtactg 4140 gatggaaaag gaggaaaaga catactcatt gtaagtgtat atcaatgctg caagcaacca 4200 acaaacccaa aaggagttac agcatatcat caacaggaaa taatgctaag tgaaacaaac 4260 agagtcgaca gagatccaag aagaaacttc tataaagact tgaaaaagtt cttgaatgaa 4320 ttccttacag acgagaacaa taacataaca cccattatac tgggagattg gaatgaagaa 4380 tgtaaaggaa catcaacatc acaaaaacta tgcgactact ttggatttgt taatatattc 4440 aaacaagtac atccaaacca caaacaattt aaaacatata tgagaggttc aaggactatc 4500 gacttcgcac tagccccccc agagctagcg aaccgagtga caaactttgt gtacgagcca 4560 ttcatgtaca ggctaaaagg agatcaccgt gcatattact ttgatatagg agaagaagtt 4620 ctatttggaa ataaacaaga accagtatat gaccaggcag gaagaacgtt cgcaagcaaa 4680 gatccaaaag cagtaactac ttatctcgca gcagcacact cgcatcttat ggccaacgca 4740 gtaatgacaa gaataaggaa cctactggca agtgatgacc cagaccacga ggaggcagaa 4800 aaactagact cactcatgac gcaagcatgc gaacacgctt ccaaccaatg taaaagaaga 4860 agaaaagatt actggaacat cgaaatacat gaaacaaaaa gaaacctatc agtatggtgt 4920 caatacaaaa gtagacgagt acggaaacta tcatcacgtg cactcatagc acggacatcg 4980 gcactaggac tacagatgag agaaggaatg ccaatggaag aaatactagg acaaatagaa 5040 atactacgca caagagtaaa agaaatacac aaggaatctg aaaagaagag agatgaatca 5100 cttacggaga gggcaaatat ggcagaagac gcaggcgaca aggagaaagc taaggcgatt 5160 cgtcaaatga aagagacaga acagaaaaca agagctttcc aaaaattgaa gttcaagaga 5220 ggacttatac acaatggagg aggtatatcg agattacaag taccaatcac atggccaaca 5280 gctgaagaat acaatgacga gacagactac aacctggaag acccgaaagc aacagaccag 5340 aaagatgcga gcaaatggag agaagtaaat tgcccaaaag agattgaatt cctgctgaga 5400 ttgcgcaacc aacgtcattt tggacaggct gaaagtgaca gaacgccctt tacaacagaa 5460 actatgaaac acaaattcaa ttggagtgca tcaacgaatg aggccgaact ggtcctaaaa 5520 ggagaatata acgatgatga attatcagat ataacaagac tatttctaga taatatgaca 5580 cgagtgaccg agacagaaga caaaccgaaa ttcttaacaa tgaaagaatt tacaggtaaa 5640 ttcaaagtat ggagagaaac aacgtcgaca tctccaagtg gaaggcatct gggacattac 5700 aaagctctgg tggcaacaat agatcgatcc ttaaaagagg aagaaagaaa agaatttgta 5760 acatttcaag aagagatatc caaatgctat ataggtttga tcaattatgc gatcaaacat 5820 agatattctc ttcaacgatg gaagacgata gtcaatatga tgatatataa agaacatggt 5880 aatgtcaaga tacaccggtt gcgagtcatt catctgtatg aagcagactt aagtctcctc 5940 tggggcgtga aatggagaga aggtatgcac acagcgttaa agacaaaatc actacaccaa 6000 ggccagtatg gagggttacc cggacgagat tgcacatcac tgacatactt agaagaatta 6060 cgatttgatt attcaaaact gacaagatat ccagttgcaa attttgataa cgacgcagca 6120 gcatgctatg atagaatcct atgtgcaata gcaagtttag caggaaggaa atacggcatt 6180 cacaaagacg ttatattcat acatgcacaa acattagaag aagcagaatt caaactgaaa 6240 tcatcactga aagtatctga tacatcatat agacactgtg ttaaatttcc catacacgga 6300 acaggccaag gatcaagcaa ttcaccaaca atatggtgtt ttatatcaag tgtactattc 6360 caatgccaca atgaaagagc gtccggaatg ttatttcagt caccagaagg tgacatgata 6420 gtcagattca atatggtagg gtttgtcgat gactccacat gtatcaccgg aggcaatccc 6480 gatgatacac tacaggaatt gctgaagaaa atgcaggatg atgcacagct atggcacgat 6540 ctgttgtggt gctcaggagg caaattggaa ctatcaaaat gcggatatca tgtgattcat 6600 tacgacttcg aagacagtgg aattccaaga atgaaacata accctgggga atcaataaca 6660 ctacagaatg aaaagggcga accaatctcc atcaaatcta aaaacatata ccaaacaaga 6720 gtgaatctag gacatgcaaa agctccaagc gattcttgta acacagaatt cgaacgtacg 6780 ttaaagaaag cagtaaagat cggggaagct ataacacagt gcggaggcac gagagctgaa 6840 agcaaaatgc tgtatagagc tgtttggaaa ccagcagtcg aatacatatt acctcaatca 6900 tttctatcga aaaagcaatt acaaaagata gagaaagcaa gtttgcctaa aatatatgcg 6960 aaatgcgggt acaataggaa cacgtcaaga gcagtactag ctggacctat agaacttgga 7020 ggaggaggat ttacacctct gtacgtgacg gccggaacag gctacgtaac tcactttctg 7080 aaaaactgga ggacacctac agaagatatt ggaaaacaat tacgaatcgt atatgcatgg 7140 acatcatatc aagcaggtgt tacatacccc ttattagaac atccagaacg tatattagat 7200 tacgtaaacg gtaaagtaat accaggaatg agagaatact tggacacaat tgatggcaaa 7260 ataaaattga ataatactta tattagatct aaattgagaa ctaacgacaa aagtatcatg 7320 gaaagagtag ccgaaatgga attcaccact attcaaagag aacggatcaa ttgcgtcaga 7380 atgtatttgg gtgtgatgta tttaagtgaa atttgtaatg aggacggaaa gtcgttacag 7440 aaaggtatcg aagacaacaa acacaacaaa acaacataca cagtatcatt gactagacca 7500 aaacaacaga aaccaaactc ctacagctgg aaattttgga agaaggcaat aagatcattc 7560 acaacagacg ataagaaatt agaattggaa ctaggatctt ggaccaacca acacagcaaa 7620 tccggcaagt gggaatcata ccagtctaat atagacaata atatatatca tcattgtagc 7680 aacaaagaag ataaccatca gtattgggaa gtttatgaac gtcaagggta tcaactcact 7740 ttaatcgacg aaatggaact ggatgaattt aagatacgaa atggaacacc aatacaaata 7800 aaatctttag caaatggaat gaaatatggc gagatgacag cagtaatagt taaagataag 7860 agaacacaga atgcttatgg acccgacgta tcatgggaca gatttataca agcacaacca 7920 gaatgggtgc gagtactcct ggaggatgtt catttctttt cagaagatgg gtattccaac 7980 ctgtgggaaa tagtagcatg catggagaaa cacaagtact tgttagctgt atctgatggt 8040 tctgtaaaat tccatgacat gagctttggt tggatcttag ctacacctac tggcgaaaga 8100 ttagcagcag ctgcaggacc ttgtaatggg agaggaaatt cacttcgggc agaaggagca 8160 ggaatgttgt cagtaacaat gtttatagca tcaatcataa aataccttga ggtagaacca 8220 atgaagatag tattcatatc tgataatcta gaactgatca aacgactgaa agcacataag 8280 cattacaacg atccataccc aaatgagacc ctgaaatcgg agttcgacgt gacagagcaa 8340 atatacagaa caacagagac atatggaata gaggcatcct acaagtgggt taaaggtcat 8400 caagataaga acacacctta catggacctg aacttagaag cacaactcaa cgtcgatgca 8460 gacaaatttg caggagactt tcagatggaa aaagggaaat tcagaccatt ggtattcctc 8520 ctaccaagct gtgatgccat gctatcgata agaggaatca gcatcacaag caactatagg 8580 aaacaattaa taagagcata tgttgagccg gaatacattc aatacctaca gtacaaattc 8640 cagtggtcaa atgaagtcat tgagatagtt tcttggaaat gcctctcact tgctatacaa 8700 agaatcaaca gagacgttct aatcacaaaa atatgcaatg atctgttacc aacagctgac 8760 acgctgtgca gaatgaaata ccaacaccac gatacatgtg ttttatgtaa caaccacgaa 8820 acaagagacc atatgataag atgtactgca aagtcaagaa ttaaatggag aaaccaatat 8880 ataaatgcaa ttagaaagaa gctaaacacg atggagacag aatacgcaat aacagaagct 8940 ctatgctccg ctattgcagc atggctggag tttggagagg tcgatataag caagtttccg 9000 atacaatttg caaatgctat cttgtcacaa gagagaatcg gatggagaca tttcttcgct 9060 ggtaaaatat cgcaggaatg gttacaacta caggagaaca gtacaaacaa gacaatagga 9120 aagaaaagag actgttacgt ttggggagcg tcggtggctg aagtgactct gacctatttc 9180 attaaactat gggaattaag gaatgaggaa gtccatggta aatctgtaga acaacaagaa 9240 agaacaagaa aaaccaaact cagtacagat gtaagaaaac taaatgcact aaaggacaaa 9300 gcaagaccgg tagatatggg cttattccac aatgacatag aagaattcat tgatagttca 9360 actgcacaaa caattgcgac atttatcagt agccacaaga gagcgattgc aaatagtgtg 9420 aagaaataca aagcagcctc acaagcagga gcaacgtctg tagtccaatg gatcagggga 9480 tggagcaaca acgacgatgt gatagaaagg atgaacacta gacaaaggaa agatatactg 9540 gaaacagatg gtaggaagaa ggagagacga cggcgtaaac aaaacagtgg aagacagaga 9600 tcaatagttg gtttcttgtc attagtgtcg taagacatta cataaaagta gatttgcggt 9660 atagctgctc cggcagtgct gcgcctttgt gagatggtac tcgagccatg ggctgagcgt 9720 ttcgaaagga tttaaattag atatttatat tattatt 9757 // ID Copia-3_PPa-I repbase; DNA; PLN; 5357 BP. XX AC . XX DT 21-DEC-2009 (Rel. 15.04, Created) DT 21-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Copia-3_PPa-I; Copia-3_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5357 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 569-569 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 633..5144 FT /product="Copia-3_PPa-I_1p" FT /translation="MSASTSSTASTMVPTITSASQHFQALLFPPLTVDGNN FT YLLWAKMAKANLFAEQLSDAIMFEESPTTSISIPPAIRWKALLLLRRHLVP FT ALQHQYLEMEDPAELWKNLKSRFDHQKTIFLPRARHNWTHLRVLDFPNLNA FT FNSEMYSIVSQLRLCGQSISEEEMIEKTLSTFPPVSAVLAQQYRNMKFQSH FT SDLMSYLLLAEKQNELLLRNAEARPIGTTVPESHALNISKSKKKLYKHGKR FT AHKYQGSHSQDHFYPYGKNKRSTINYSRKQKSEMRSCHKCGMIGHLAHACR FT TSEYFIKIFQENKKLRAEAREVHTMDASMDSIGVDDLEAYMNDRTSNDESN FT DALIDSATTHTILRDRRFFIEKSSTWQTKNMMTMAGANAFCFQEGTAMVKL FT PAGSIIKCKHAMFAPSAPRSLISYRDVRINGYHLSTATLNRKEVLVLAKNH FT KVVEKAFATENGLYRIVIRPPIIFNFASSISESRVSLWHGRLGHPGSTLFR FT KIIPCITGHNLKPADVDSMELCRACVQGKMITRPSIWKLPQELPPMLERLH FT GDICGPINPISGPFRYFLVLVDASGKQSHVSLLSTRNMVFANLISMLIRFR FT AHFPDYPIKTLRMDNAKEFASKSFEDYCTATGIELTYCVPYEHAQNGLAES FT FIKRIQLITRPLLLHANLPASMWGHAVLHAAALIRLRPSSLEIVSPHELIS FT GRVPNVSHLRVFGCRAWIPVPEPQRRTIGAHRQEGIYVGFDSPSIIRIVDP FT STGTLLRARLQNCRFEETVFPSLQGGVSNQQRNKVLIFEAPETFTMNPDPR FT TSLAETEVAKILHLKRIADETPDGFNDAPRITRVPINEAQNAPAQIAVPLT FT TIPQVITTTTKRTRGPDKQPRKKKAIKLTNPGIISQEIATHLAGLPIHDDI FT SMHNVPSIPMKNNLGIGRNKNKLSKELSILYCATDDIWDRPSITVDESFAY FT MIIEALSCEEDDPEPQTIEEAMRRSDWSKWKTAIEEEYASLRKRKVFGPIV FT DTLTSRPVGYKMVLICKRDAQGQITRYKARLVAQGFTQRFGIDYESTYSPV FT MDSITFRYIIGMTVHATLEMHLMDVVTAYLYGSLDANIYMKVPPGLETGTP FT NQPAPGKYRGIKLCKALYGLKQSGRMWYQRLRDYLITNNFISDPLIPCLFI FT KRDKTGFVIIAVYVDDLNLVGTTSACVTATNLLIREFEMKMLGKITFCIGL FT QIMHLTDGSIFLYQLTYIRRILQRFNMIDAYPLSTPMVGRGRDGHDPYRPC FT EEEEEILGDQYPYLAAVGALLYLATSTRPDIAFAVSVLARHSARPTLRHWN FT GIKYLLRYLKGTEDLGLYYTKSADPKLVGYCDAGYKSDIATAKSQTGYVFL FT RHGAAISWKSVKQTITATSSNHAEIIALHEASRECIWLRSIDKFIQTTCGF FT SYDDSPTILHEDNSACIAQMQVGFIKGDRTKHIDPKYFSYTHDLITDQALI FT IKKIESTNNLADLFTKALPLSNHRRLTYGIGMRRLAFLE" XX SQ Sequence 5357 BP; 1588 A; 1124 C; 978 G; 1667 T; 0 other; cgttatcagc acgactctct tctacacact atcacaattt ttttgctcta gtctttgact 60 cttcaaacct gttgctaccc ttgctcagtg tctgcctcat gatcttgttc ttcttgctgg 120 cccctcacac attagctgct tgcttagagc acttgttcca ctctctgcct tgcttgctct 180 gaatacttga tccagcccaa ctccaccctc tgcttgctcc ctgctccctg ctgcgccccg 240 cgcctgccgc cgaactgccg ccgaactgcc gccaaaccgc cgaatccgcc gctgccaccc 300 tgtcgccgct gacgctgccg ccgccgccgc cgctgccgcc gccgcccgcc gtcgccgctg 360 tccgctgctg cccgccgctg ccgcccgccg ttgcccgccg ttgccgccgc tgctgccacc 420 ctgccgccct accgctgcct gctgccgcca tcttattgct gttctgctgc cttaatctac 480 aactctctct ccttaaaaat atatatatat atatatatat atttttgttt tttcaagttc 540 aagtttatca ttttatttga ctttatattt taaggtacgt tttactcaac ttttctactt 600 gatcttgtat tttctttaca gatttattta taatgagtgc ttcaacatct tcaactgctt 660 ctactatggt tccaactatt accagtgcat cccaacattt tcaagctctt ttatttccac 720 cattgactgt ggatggaaac aattatctat tatgggcaaa aatggcaaaa gcaaatttat 780 ttgcagaaca actctcggat gccattatgt ttgaagaatc tcctacaaca agtatttcta 840 tacctcctgc tattcgttgg aaagcacttc ttctccttcg tcgtcatctt gtacctgcat 900 tacaacatca atatttggaa atggaagacc ctgcagaact ttggaagaat cttaaatcta 960 ggtttgatca tcaaaagacc atttttcttc cacgtgcacg tcataattgg acacatttac 1020 gtgtcttgga ttttccaaat ttaaatgctt tcaatagtga aatgtatagt attgtctcac 1080 aattacgatt atgtggacaa agcatttctg aagaagaaat gattgagaaa actctctcta 1140 catttcctcc tgtatctgct gtgcttgcac aacaatacag gaacatgaaa tttcagagtc 1200 attctgatct catgtcctat ctacttcttg cggagaagca aaatgagcta ctcttgcgca 1260 atgcggaagc tcgtcctatt ggaactacag ttccagaatc tcatgcactt aatatttcaa 1320 agtctaagaa gaaattatat aaacatggga aacgtgctca taagtatcag ggtagtcata 1380 gtcaagacca tttctaccca tatggaaaga ataaacgttc tactattaat tatagtagaa 1440 aacaaaaatc agagatgcgt tcttgccata agtgtggaat gattggacat ttagcacatg 1500 cgtgccgtac ttcagaatat tttattaaaa tattccaaga aaataagaaa ttacgagctg 1560 aggctcgtga agttcatacc atggatgcgt ccatggattc aattggtgtt gatgacttag 1620 aggcttatat gaatgataga acctctaatg atgaatcaaa tgatgcgctc attgattctg 1680 caacaacaca tactatcttg cgagatagac gattttttat tgaaaaatct tcaacttggc 1740 aaactaaaaa tatgatgacc atggctggag caaatgcgtt ttgtttccaa gagggcacag 1800 cgatggtaaa attacctgcg ggttccatca taaaatgtaa acatgcgatg tttgcaccct 1860 cagcacctcg gagtctgatc agctaccgag atgtgcgtat taatggttat cacctctcga 1920 ccgccacttt aaatagaaaa gaggttttgg ttcttgcgaa gaaccataaa gttgttgaaa 1980 aagcttttgc tacagaaaat ggtttatacc gaattgtgat tcggcctccc attatattta 2040 attttgcatc atctatctca gagagtcgtg tttctctctg gcatggacga ttgggacatc 2100 caggatccac attatttaga aagatcattc catgtataac tgggcacaat ttaaagcctg 2160 cagatgtaga ctctatggaa ttatgtcgtg catgcgtgca aggtaaaatg attactcggc 2220 cttcaatttg gaaacttcca caagaattac caccaatgct tgaaagattg catggtgata 2280 tttgtggtcc tattaatcca atatcaggac catttcgtta ttttttggtc cttgttgatg 2340 catcaggtaa acaatcacat gtttcattat tatcaactcg aaacatggtg tttgccaatc 2400 ttatatctat gcttattcgc tttcgggcac attttcctga ttatcctata aaaacattgc 2460 gtatggataa tgcaaaagaa tttgcatcaa agtcttttga agactattgt actgcaacag 2520 gaatcgagtt gacatattgt gttccatatg aacatgctca aaatggactt gcagagtcat 2580 ttataaagcg tatacaactc attacccggc cactcctcct tcacgcaaat ctacctgcat 2640 ctatgtgggg tcatgcagtt ttacatgctg cagcattaat acgcctccgc ccttcttctc 2700 ttgaaattgt ttcaccacat gagctcattt cgggtcgtgt tccaaatgta tctcacttac 2760 gagtatttgg ttgccgtgct tggattccag taccagaacc tcaacggcgt accattggag 2820 ctcatcgaca agaaggcata tatgttggtt ttgattcacc aagcattatt cgtattgttg 2880 atccatcaac tggcacatta ttacgtgcac gtttgcaaaa ttgccgtttt gaagaaactg 2940 tattcccatc tcttcaagga ggagtatcca atcaacaaag aaataaagta ctcatatttg 3000 aagcaccaga aacgtttaca atgaatcccg atcctaggac atctttggca gaaactgaag 3060 ttgctaagat tttgcattta aaacggatcg cggatgaaac acctgatggc ttcaatgatg 3120 cacctagaat tacaagagtt cctattaatg aggctcagaa tgcacctgct cagattgcag 3180 tgccattgac tacaatacct caagttataa caacaacaac taaaagaact cgtggaccag 3240 ataagcaacc acgtaagaag aaagctataa aattaactaa tcctggtatt atttctcaag 3300 aaattgccac tcatcttgca ggactaccaa ttcatgatga tatatccatg cataatgtac 3360 cttcaattcc tatgaaaaac aatcttggaa ttggaaggaa taagaacaag ttgagtaaag 3420 aattatctat tctgtattgt gctacagatg atatttggga cagaccatct attacggtag 3480 atgaatcatt tgcatatatg attatagaag ccctttcttg cgaggaagac gatcctgaac 3540 ctcaaaccat cgaagaggcg atgcgtcgct cagattggtc aaaatggaaa actgctattg 3600 aggaggagta tgcctctttg cgtaagagga aagtctttgg tccaattgta gacactctta 3660 catctcgccc tgtgggatat aaaatggtat taatatgcaa gcgagatgct caaggccaaa 3720 taacccgcta taaagctcgt cttgttgctc aaggatttac tcaacgattt ggcattgatt 3780 atgaatccac atattctcca gtcatggatt caattacatt tcgatatatt attggaatga 3840 cagttcatgc cacccttgag atgcatctga tggatgtagt aactgcatat ctatatggtt 3900 ctcttgatgc aaatatttat atgaaagttc cacctggctt agaaacagga actccaaatc 3960 aacccgctcc aggaaaatat cgtggtatta aattatgtaa ggccttgtat ggtttaaaac 4020 aatccggacg aatgtggtat caacgtcttc gagattattt aattacaaat aattttataa 4080 gtgatccact aatcccttgt ttgtttatca aacgagataa aactggtttt gtgatcatcg 4140 ctgtatatgt tgatgatctt aacctagtgg gcactacatc tgcatgtgtt acagctacaa 4200 acctacttat acgtgaattt gagatgaaaa tgctaggaaa aataactttc tgcattggtc 4260 ttcagattat gcatctaaca gatggtagca tttttctcta ccaactaacg tatattagac 4320 gaatcttgca aagatttaat atgattgatg cttatccatt gtccacacca atggttggac 4380 gtggtcgtga tggtcatgat ccataccgtc catgcgagga ggaggaggaa atattgggag 4440 accaatatcc atacctcgca gcggttggag cacttttgta tttagctaca tctacaagac 4500 cagatattgc atttgcagtt agtgttcttg caagacatag tgcacgtcca acactacgac 4560 attggaatgg catcaaatat ttattacgtt atttaaaagg tactgaagac ttgggattat 4620 actacacaaa atccgcagat ccaaaattgg ttggatattg tgatgcagga tataaatctg 4680 atattgcaac agctaaatct caaacaggat atgtattttt aagacatgga gctgcaatat 4740 catggaaatc agtgaaacaa acaataactg caacttcatc caaccatgca gaaattattg 4800 ccttacatga agcatctcga gaatgtattt ggttgcgatc aattgataaa ttcattcaaa 4860 caacctgtgg attttcatat gatgattctc caactatctt gcatgaagat aatagtgctt 4920 gtattgcaca gatgcaagtt ggtttcatta aaggcgacag gacaaagcat attgatccaa 4980 agtattttag ttatactcat gacttgatta ctgatcaagc acttataatt aagaaaattg 5040 aatctacaaa taaccttgct gatctcttca ccaaagctct cccattaagc aaccatcgtc 5100 gacttactta tggcattggt atgcggcgac ttgcttttct tgaataagaa agttaatgag 5160 ctctttaaat aattaaagaa aatgatgttg tactcttttt ccttcatcta tggttttgtc 5220 cttaaataaa ataaggtttt cctagataag gttttaatga ggcaacaatt cttgatcttg 5280 caagatcaca gaaaagtata gatcataatt ctatacaaat tttatattat gtaaatatta 5340 tgatgagcga ggaggag 5357 // ID Gypsy-7_PIT-LTR repbase; DNA; PLN; 267 BP. XX AC AATU01002683; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PIT_; KW Gypsy-7_PIT-I; Gypsy-7_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-267 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002683; Positions 129949 129683. XX SQ Sequence 267 BP; 64 A; 78 C; 48 G; 77 T; 0 other; tgtgaagggt attgcccttc aaggtcacaa gttctggcaa gctgctccac gcagtcgcat 60 ggtagctcga tcgcaattac tccagtagtt tcgcaactcc tgtagcttca tctcacaggt 120 ttcatttcta ggcactaggc agtagcatct cgtgcctgct actctcactc tgccaactaa 180 cggcattcta ttcaattcag tctttcattt tcctgcaact acgcaagccg atcaagactc 240 actcgtcttt cagtaaaacc cataaca 267 // ID Copia-6_ES-I repbase; DNA; PLN; 6462 BP. XX AC CABU01007703; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_ES_; KW Copia-6_ES-LTR; Copia-6_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-6462 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01007703; Positions 39903 33442. XX CC Positions [3219-3764] - Integrase core CC 'CACTT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS join(96..4784,4788..6206) FT /product="Copia-6_ES-I_1p" FT /translation="MEDIDLSALSGEELQQKVEEIVQQRVQAELEANRINE FT GEVTIAQPPAGNPATPTGNPVPPTGNQPSPSSQGTPATFNDPSSVAHIVAQ FT AAKATAEAIAQQQGFARSGTLRVNPGSEIEPWLGSVKKEQDLYIMFDIFRG FT KMISYFQEEGVHDALELEVEVKVGKRGVNVGDLRRLFGNEVVDKSFKLWNI FT LISKVMYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEM FT KESESPQDYIARSEALRLRLASVGTIKDETDANKDIARGLPSSLYAVQKGI FT LLAHDVLTLRTLETVVRDAHVEMERERSKGERREVELALAASGMSRRGGGS FT GGASWGQDGGQAAAGGQNRDGEKKNNDVFNDDPGGFCRYHQSELHTNEQCR FT LQQQLRRARSREGAEERRSGGGSRGGGGSQRGGRPPPGPGRGGGRWVRIEQ FT QHHTGHGGGGWSQASPPPRPLRGRGPGGRLGRPPGGRGPAGRHSSDGRAER FT DRAGRGPGHARSGHGREQAYVVYYAHDDGGYYEDYGDYDEGYSYDDGYHDA FT GYAHYAGGGDSYSYSSGYEDSRSSDGGIHYVYYPPAGQDSSSEQPRQPPPA FT GSSSTASSSSSAPSPGAPPSSGYLHLCTAQSVPLGKSHPEDFFGRIGVTIG FT VESAASASSLLSVESSEGPPGSERWVADSGASNSFTNSSLHMYDLQEIPAN FT RKYVVVGDGRLLEVQAIGSINLSFFQEDENGEKTTMCVKLTDVSVVENLSF FT NLFSTHAVSRKQQILHDERGATLQNGLLFAREEKASAAYAMRLPYDPSATI FT VDSSALPAFVTAPDSAPAVGSTRSPSQKGGSAESLVSVLRFPPAGSASVVP FT SSESVTPAGPTSVVPSTDSVTPTGPTSVGPASDSVPPAGSAGVVPSSASEF FT VCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQEFFPAFIPETDAANVAAVL FT DSIDGGADFDFGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRE FT TAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRVHLDLCGP FT LVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGR FT IECFRVDNGTEWTRGDFRQFCDDNGIGVEFTPPGTPKYNGVVESAIWRIMK FT AGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANP FT GRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCFYLNGGDNH FT PSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPPFTPPVV FT SINFGPAPTPSTAATPPAATPPPATTPPSAPTPSQPPSATSPPPSATPAPG FT QPSSASSPSPLATLDPDQPPPPDPAMPPLTAHAMRQLRPGTKAEGMIDPRL FT PSRTRSGTRHSTGLISMLDKNTLVSMLEARSAVDEERRELGGAEAGEPGGA FT GGGEQAGALAAVDPGAGGAGFPLAFATLLANREDIDATLRDQRPPEQRPDL FT PHCQASDLRVPKSYKEAMASEHRHLWSDSMQREFYGLLEAGTFTPAKQLVE FT NAINAKWVFDWKADEFGWPTKVKSRLVARGDMQREYIDFGELYAPTVSVSC FT VRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKL FT GKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVV FT HVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLT FT ISQQTFADELAAEYGVVGGKSVPMSSGVKLSDFDADEVATDFPFRELVGSL FT MWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQ FT RGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTL FT STTEAEYVALGDIVKEILFLRQIWRFMLPQVGLPCIPVFEDNQGAIQLAQN FT PISNSNSKHIDVRHHFLRELVERKEISVMHVPSPYQRADFLTKSLPKDAFE FT SHRDFAMNLA" XX SQ Sequence 6462 BP; 1335 A; 1756 C; 2001 G; 1370 T; 0 other; cactagtgcg atatcacggt atctgcgcgc gggcgtagcc atccgggggt tgtgcagtca 60 cgcgcaatcg gtagactccc acaacaccaa acaccatgga ggacatcgac ctctccgccc 120 tcagcgggga agagctacaa caaaaagtgg aggagatcgt ccagcaacga gtgcaagccg 180 aactcgaagc caacaggatc aacgagggtg aagtcaccat tgcccaacca ccagccggca 240 acccagccac tccaaccggc aacccagtcc cacctactgg caaccaacca tcaccctcca 300 gccagggtac accagccaca ttcaacgacc ccagcagcgt cgcacacatc gtggcgcaag 360 cggccaaggc gacagctgag gccatcgctc aacaacaggg ctttgcccgc tcaggcacgt 420 tacgtgtcaa tccaggctca gaaatcgaac cttggcttgg tagtgtaaag aaggagcagg 480 acttgtacat tatgtttgat atttttcgtg gtaagatgat ttcatatttt caggaggagg 540 gtgtgcatga tgcgttggaa ctggaggtcg aggtcaaggt cgggaagagg ggtgtgaatg 600 taggagacct tcggagactt tttggaaatg aagtggtaga caagtctttc aaactgtgga 660 atatcctcat aagcaaggtt atgtatcccc cgattcagag cttgattctg gcgtgtgaga 720 gtccccaaaa gggctggaaa atagtgaccg agttctatca ggagaaaaag cagtcagaaa 780 agtcgaggtt ggagcaggac tggaaggagt tggagatgaa agagtccgag agtccacagg 840 attacattgc ccgctcagag gcccttcgcc tgcgtctcgc atctgtaggc acgattaagg 900 atgaaacaga tgccaacaaa gacattgctc gtggccttcc ctcttcgttg tatgccgtgc 960 aaaaaggaat actgcttgcc catgatgtcc tgacgttgcg tacccttgag actgtggtga 1020 gggacgccca cgtggagatg gagcgcgaga ggagcaaggg ggagaggcgc gaggtggagc 1080 tcgctctcgc cgcatccggc atgagccgac gcggcggggg cagtgggggg gcatcctggg 1140 gtcaagacgg cggtcaggca gcagctggcg gccaaaatcg tgacggagag aagaaaaata 1200 atgacgtgtt caacgacgac cccggcggat tttgccgcta ccaccagtcc gagcttcaca 1260 ccaacgagca gtgtcgtctc cagcagcaac tgcggcgtgc gcgttcgaga gagggcgccg 1320 aggaacgtcg ctcgggcggc ggcagccgcg gtggcggcgg tagccagcga gggggtagac 1380 cgccgccggg acccggccgc ggtggcgggc gatgggtgag gatagagcag cagcaccaca 1440 ccggtcatgg tggcggtggc tggagccaag cctcaccccc cccgcgacct cttcgtggac 1500 gtgggcctgg tggtcgtctg gggcgtcccc cggggggtcg tgggcccgcg ggacgccaca 1560 gcagcgacgg gcgtgccgag agagatcggg cagggagagg cccggggcac gcgcgttctg 1620 gccacggaag agagcaggcg tacgttgtgt actacgccca cgatgatggt ggctactacg 1680 aagattacgg cgactacgac gaaggctact cctacgacga cggctaccac gacgccgggt 1740 acgcccacta cgccggcggc ggggacagct acagctactc ctccgggtac gaagacagcc 1800 gttcatctga cggcgggatc cactacgtct actaccctcc cgccggtcaa gattcatcat 1860 ccgagcagcc acgtcagccc ccccccgcgg gcagcagcag caccgcttcc tcctcgtcct 1920 ctgccccttc tcctggcgcg cctccatctt cgggctacct ccacctctgc acggcacaat 1980 cggtgcccct aggcaagtct caccccgaag atttttttgg taggatagga gtgacgattg 2040 gagttgagtc tgctgcgtct gcttcgtctt tgctgagtgt ggaatctagt gaggggccgc 2100 ctggtagcga gagatgggta gctgattcag gtgcaagcaa cagttttacc aacagtagtc 2160 tacacatgta cgatctgcag gagatccccg caaataggaa gtatgtcgtc gtaggtgatg 2220 gtcgactgct agaagtgcaa gctatcggta gcatcaacct tagtttcttt caggaggatg 2280 agaacggtga aaaaacgacg atgtgtgtta agctgactga cgtgtctgta gtagagaacc 2340 tgagcttcaa tttgttttca acgcatgcag tttctcgaaa gcaacaaatc ctgcacgacg 2400 agcgtggtgc aaccctccaa aatggactgc tatttgctag ggaggaaaaa gcgtctgcag 2460 catatgccat gcgcttacca tacgacccat ctgcaactat agtagactct tctgctttgc 2520 ctgcattcgt gactgccccc gattccgccc ccgccgttgg ctccacgcgt tccccttccc 2580 aaaaaggggg ctccgcggaa tcattggtgt ccgtgttgcg tttccctccc gctggctctg 2640 ctagcgtagt accttcgagt gagagcgtca cgcccgctgg tcccaccagc gtagtacctt 2700 cgactgatag cgtcacgccc actggtccca ccagtgtagg acctgcgagt gacagcgtcc 2760 cgcccgccgg ctctgccggc gtagtacctt cttcggcgtc cgagtttgtt tgtgtgggta 2820 cttttccggg tatggatctt ggagacacga gtgtgctcac cgacgagcag ctcatggatg 2880 gctatgatga caccccgtat caagagtttt tccccgcgtt tatccctgag actgatgctg 2940 cgaatgtagc tgctgttttg gatagcattg atgggggtgc tgattttgac ttcggtgcgg 3000 ccgcgcttgg ccctggtgcg tccccgtttg ctcttggttc gactgaaaag tccgttgaca 3060 tcaaccgctt ccaccgctcc cttgcccacg cttgcgagcc ccttttgaga gaaaccgccc 3120 agcagagagg catcgtgctc accggcaagc tggaaccgtg cacggactgc atgaaggcga 3180 agggcaggcg agggtcggtg ccgcgggggc cgggagcgcg ggcgtccaag ccactcgggc 3240 gtgttcacct ggacttgtgt ggaccgctgg tgccttccct gggcggcaac ctctacctgt 3300 tcgtcgccgt cgacagcgcc tcgcggtgga acaaggtcta cggtctccgg cggaagtccg 3360 acgcgctggc ggcaacgaaa aggctgctgg cggacgtggg gcggtacgac ctcgggcgca 3420 tcgagtgttt ccgcgtcgac aacggcaccg agtggacccg tggcgacttc cggcaattct 3480 gcgacgacaa cggcatcggc gtcgagttca ccccgcctgg cactccgaag tacaacggcg 3540 tcgtcgagag cgccatctgg cggattatga aggccggcat ggccgcccgc cgcagcgctg 3600 gccgtgtgtt caacgtcgac ttcgcctcca tccccggcct cgacgagcgc ggtgaccgtc 3660 tttggatgga atcggcgaag tgggccgccg acgctcttaa ccagtcggcg accaaggcca 3720 accccgggcg gcgctcgccg cacgagatgt tcaccggcga gcaagggcca ttccgcgtgc 3780 tgccgttctt ccagcccggc ttcatgcgcg aggatcgccg caccaagctc gacgaccagg 3840 ccaccctctg cttctacctg aacggcggcg acaaccaccc gagcggcacc gtcaaggtcc 3900 tcaaggcgtc caccggtcgc gtcgtctaca ccaacaacgt gtcgtgggtg acgtcggcgc 3960 cagccggcga ggggggttcc gctggtatca ccgctgcacc gacacccccc ccgttcacgc 4020 cgccggtcgt ctcgatcaac tttggcccag caccgacgcc ttcgactgcc gcaacgccac 4080 ctgccgcaac gccgccgcca gcgaccacgc cgccgtccgc tcccacgcct tcacagccgc 4140 cctctgccac ttcgccgcca ccgtcggcga cccccgcccc tggccagccg tcttctgcct 4200 cttcgccgtc accgttggcg accctcgatc cagaccagcc gccgccgccg gaccccgcga 4260 tgcccccgct tacggctcac gccatgcggc agcttcgccc gggtacaaag gccgagggta 4320 tgatagaccc gcggctgcca agccgaacga gatcgggcac gaggcacagc acaggactca 4380 tctcgatgct agacaagaac actctggtgt cgatgctgga ggctcggagc gcggtggatg 4440 aggagcgcag ggagctgggg ggggcggagg ccggagagcc ggggggagcg gggggcggag 4500 aacaggcggg agcactcgca gcggtggacc cgggggctgg aggagcgggc tttccactcg 4560 catttgccac gctcctcgcc aaccgggaag acatcgacgc cacgctgcga gaccagcgcc 4620 cgccggagca acgccctgac cttcctcact gccaggccag cgaccttcgt gtccccaaga 4680 gctacaaaga ggccatggcg tcggagcacc ggcacctttg gagcgactct atgcaaaggg 4740 agttttacgg cttgttggaa gcagggactt ttactccggc gaagtagcaa ctagtggaga 4800 acgcaattaa cgctaagtgg gtattcgatt ggaaggcaga tgaatttgga tggcccacca 4860 aggtgaagtc gagacttgta gcgagaggtg atatgcagag agagtacatt gactttggag 4920 agctgtacgc gcctaccgtt tctgtttcgt gtgttaggat gttggctgcg ttggcgtgcg 4980 agttaaatct cgacttgtgt catttcgata ttgagcaagc ttttgtgcgc tcggagttgg 5040 aggaggacgt gtacatgcgt ttgccacagg gatgtggagc tctatctgga atgattgtaa 5100 aactaggcaa gagtctgtat ggcttgagac aggcatctag gcagtggcat gcaatgctga 5160 agaggtgttt agtggcgtta ggttttgagc agtgcatggc cgatgcttgt gtgtttcgtt 5220 tgattgagga tggatgtgtt gttttgattt tggtagtaca tgtagatgac atttttgctg 5280 tgggagagag ggagagatgt gataagtttg gcgccgacct taacaagtcc gtgccagtga 5340 agaacctggg agagttgaga tggtattctg ggtgctttta cgagaggaac aaggagaccg 5400 gaaggttgac gatttctcag cagactttcg cggacgagct agcagcagaa tatggagtag 5460 tgggaggtaa gagcgttccg atgtcttcgg gggtgaagct ttctgatttt gatgcggatg 5520 aggtggcgac agactttccg tttcgtgagc tggtaggatc gttgatgtgg ctggcgactc 5580 aaactaggcc agacattgcg aatgctgtaa gggcagtagc taggtattgc gcatctccga 5640 agctggtaca ctggaatgca gcgatggata ttttaggcta tgcgaggagg acgagtcact 5700 ttggtatttc gtttcagagg ggtacagtag aaggattcag cttgcagggg tacgctgatg 5760 cggactttgc aagcaaggca gcagaccgta ggtcggtatc agggggaatc gtgacgtgtg 5820 gaggaggcgc tgtgtcttgg ttttccagaa cgcaaaagtg cgtcacgctt tcgacgacag 5880 aagcagagta cgtcgcgctt ggtgacatag tgaaggagat tttgtttttg aggcagattt 5940 ggcgtttcat gttgccgcag gtcggcttgc cgtgtatccc cgtcttcgag gacaaccagg 6000 gggcgattca actagcgcag aaccccatct caaactcgaa ctcgaagcac atagatgtaa 6060 ggcaccattt tctcagggaa ctggtagaga ggaaggaaat ttcggtgatg cacgtgccgt 6120 ctccgtacca gcgtgcagat tttctcacga agagcttgcc gaaggacgct ttcgagtctc 6180 accgtgattt tgcaatgaat ttggcatgaa cattttattg tttttctgat tggttgtgtt 6240 ttggttttgt tttgtttctc gttttgtttc ccgttttctt tcatttctcg cgccaagtat 6300 ttgttacgcg cgatgcagta ttcatgttcc tttgaattgt ttttccctct tatgttattc 6360 tggtcgagta ttgatggcat atattcttgg agagatgtat tttggttgac atatcgagtg 6420 ttcgcgaagt tttcagtgaa taactgttgc gagcaggggg ga 6462 // ID Gypsy-3_PSo-I repbase; DNA; PLN; 7643 BP. XX AC AAQY01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PSo_; KW Gypsy-3_PSo-LTR; Gypsy-3_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7643 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000384; Positions 97230 104872. XX CC Positions [4348-4839] - Integrase core CC 'ACTGG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 110..1117 FT /product="Gypsy-3_PSo-I_3p" FT /translation="MNDSQYESLRKMAGIFGTDALRSLAAATPAEQVERIN FT AFDTYERGLIAHVQGLQATAAAPKPVQPKPLRLKVHPFEGKEGENLHFWVR FT EVELAMDAALVSDERLRVAFALSNLSGRAKSWAYTREATTPGCFASWSQLC FT EQLRAAFLPANNEYRQRSRFLACKQGRRELHEYIQEMRVLTASLVGNPLPE FT HIRVTVFMDGLRVGPARTQLFRVQANTMEEAIQIALQEEYSHKQARTPATV FT WQSNPASGGAPNGNSGNGAINGPVPKDLGMAEQSDIRCYGCGKLGHMKRAC FT PAGGLKKKFSSKPFGSRGRWQKPRPRNQGNAGHQQGRGALLGKH" FT CDS 1952..4171 FT /product="Gypsy-3_PSo-I_4p" FT /translation="MRESLEALLVWVTKFHTARCNIVPPSKAGNQVPLKDK FT AGDVVPHEIEKIGGAVKAAPRDEDTRGSRRKPGLVVWPTTPVASDSEPPAK FT APAAEECYHIFDGVTGRRVKTGAVELTALPEVSELLNLEELAMEDFLAELK FT AGEIAELVLLRPESTSAELNSSSVMEAVLEEFQRQRASRMGSEILKNPRNP FT VYPLVKEFEDVVSKDPPSNLPPDRGIRHEIDLVPGTKYCVTRQWPLPREQC FT EVIDAFFAAKAKAGMVRESKSPHSTPTFCVRKPNGKWRLVRGYNKLNSATV FT PAQTLIPRKDVLLNNMAGCTLYSALDLVDGYYQILMRESDIPLTAVSTPSG FT MLWEWLVMPQGLSNAPATFNRLVTQLFRPLRAFTQTYFDDIYVHSRAEAGQ FT TAMEVHLQHLRRVFEVMRANKLYANIDKCVFAAEEIKVLGCFVSSAGVRVD FT PEKVKTIAAWPPPRSQKDLRQWLGLANYLHKYSAGYAELARPLSDLLKKDV FT DWRWERRHQDAFNDIKASLQCAPVLALPDKTKPFSVVCDASDYAIGCALLQ FT ADDEGRERVISFQSRQLKAAERNYPVHDKELLAMKYALVKFRVHLLSSTPF FT VVYTDHASLRTAVNTPHLSQRMARWLSFFAEYNFRVEYKPGKLNVLTDALS FT RRPDYELAHISRARRICMIASGWGTETMPVSDLLCGSWPLARKPRPSGSRP FT DNVQGCAAMSGLTVCSTIGSSPRILPVLSCPTTRISSTTS" XX SQ Sequence 7643 BP; 1495 A; 2272 C; 2370 G; 1506 T; 0 other; cttggtagca cttgtagtca atcctacgcc tacgcgggta gattggacta cctgaatcct 60 ctgtggtctc atcgagtgag ccaagattga tcgtacggag tttccccata tgaacgactc 120 gcagtacgag tcccttcgta agatggcagg catctttggg acagatgccc tgcgtagctt 180 agcggcggcg acgccggctg agcaggttga gcgtatcaac gcgttcgaca cctacgagcg 240 agggctcatc gcccacgttc aagggctgca ggccactgcg gccgcgccga agccggtgca 300 accgaagccc ctgcggctga aggttcaccc cttcgaaggg aaggaaggag aaaaccttca 360 cttctgggtt cgagaggttg agctcgcgat ggacgcagct ctcgtctcgg acgagcgact 420 ccgtgtcgcc tttgcgctct ccaaccttag tggtcgcgct aagagttggg cgtatacgcg 480 cgaagcgacg acgcctggat gcttcgcatc atggtcccag ctgtgcgagc agctgcgggc 540 cgcgtttctt ccggcgaaca acgagtaccg ccagcgttcg cgcttcctcg cctgcaaaca 600 aggaaggcgc gagctgcatg agtacatcca ggagatgcga gtgctcactg cctctttggt 660 ggggaacccc ctgcctgaac acatcagggt gaccgtgttc atggacggtc tgcgtgtcgg 720 tcctgcccgc acgcaactgt tccgtgtgca agcaaacact atggaggagg cgattcagat 780 cgccctccag gaggagtaca gccacaagca ggctcgtacc cccgccacgg tatggcagag 840 caaccctgcc tctggtggtg cgcctaatgg taactccggc aatggagcga tcaacgggcc 900 ggttcccaag gatctgggca tggccgagca gagcgacatt cgctgctacg gctgtggcaa 960 gcttgggcac atgaaacgtg cttgtcccgc gggagggctg aagaagaagt tctcttcgaa 1020 gccctttggc tctaggggtc gctggcagaa gccgcgcccc aggaaccagg ggaacgccgg 1080 acaccagcag gggcggggcg ccctactggg gaaacactaa gtcttcatga ggggcgtgcg 1140 ggtggcgcac gccataggga cttagaccct gagagtctct gtactctcga agcggagaag 1200 ggcagcggtg ggctgcttgt ggtgcacgcg agtgtaccgg gatacgatca tcccttgaga 1260 atcttgatcg actctggggc gtccaagaac tttgcgcgcc gccagactgt cgcacgcaat 1320 cgcgacaagt acgccgatgc gctacgaggc agcaaaggca acgggctggt ctcggtaaga 1380 ctggccgacg gtacggtggt agaagtacct ggggtccaca tggacctcaa tgtcaagttc 1440 gaggacttcg acagcacgga gccgttcttg gtcctagaca tggacaagta cgacttgatc 1500 cttggcatgc cgtggctgga gaaacacgag ccttggatcg actggcgcgg caaggccatc 1560 gggtccagcc gtcccccacg ctctgacaga gctttggtga gtcatgttcc cacctctggc 1620 agcagctggg gcgcccgcga gggccgccag ggcgcagcag cgtctaatga gttcttgggg 1680 tccgtcgaga ctgacgacga ctccgaccgg gccggacaag gcctgagagt ggaggtgccg 1740 gacagcacct accaggtggg taacgtaggt ccacacgcgg gtaacgaagt accgcaggca 1800 gcaagggctg ctggagaagg cgccgctggc gttggcgtgg gtaaccaagt tccacgcgag 1860 gtcactcaga ccgtaactga tgaggaaggc actgcagacg cttccgatgt gggtaacata 1920 gttccacagg aggtcactca gaccataact gatgcgggag tcgctggaag cgctcctggt 1980 gtgggtaacc aagttccaca cggcgaggtg taacatagtt ccacccagca aggcgggtaa 2040 ccaagttccg ctcaaggaca aggcgggtga cgtagttccg cacgagatcg agaagatcgg 2100 tggtgccgtc aaggcggcac cacgagacga agacacccga gggtcacgtc gtaagccggg 2160 cctagtcgtg tggccgacga cgccagtcgc cagcgactcc gagcctccag ccaaggctcc 2220 agccgccgaa gagtgttatc acatcttcga cggcgtgacc ggtcgtcggg tcaagacagg 2280 agctgtcgag cttacagctc tgcccgaggt ttcagagttg ctgaaccttg aggagctcgc 2340 catggaggac ttcttggccg agctaaaggc cggggagatc gcagagttgg ttctcctccg 2400 accggagtcc acgtcggccg agttgaactc gtcctcggtc atggaggcag tcctggagga 2460 gttccagaga cagcgcgcgt cgcgcatggg ctctgagatt cttaagaacc cccggaatcc 2520 ggtgtacccc ttggtgaagg agttcgagga cgtggtgtcc aaggatccac cgtccaatct 2580 ccctcctgac aggggaatca ggcacgagat cgatctcgtg ccgggcacga agtactgtgt 2640 cacgaggcaa tggcctcttc cccgggagca gtgtgaagtc attgatgcct tctttgccgc 2700 caaggcgaag gcaggcatgg tgcgggagtc gaagtccccg cactcgacgc ctaccttctg 2760 tgttcgcaaa ccgaacggaa agtggcgtct ggttcgtggt tataacaagc tgaacagcgc 2820 gacagtgcct gcgcagacac tgatcccgcg caaggacgtg ttgctcaaca acatggctgg 2880 ctgcacgctg tatagcgcgc tggacctggt ggacggatac taccagatcc tgatgcgcga 2940 gagcgacatc ccactcacgg ctgtgagcac gccgagcggt atgctctggg agtggctggt 3000 catgcctcag gggctttcta acgccccggc aacgttcaat cgcttggtca cacaactgtt 3060 ccgacctttg cgtgcgttca cacagacgta ctttgacgac atctacgtcc acagccgtgc 3120 cgaggcaggc cagacggcca tggaggtgca tctccagcac cttcgacgtg tgttcgaagt 3180 catgcgggcg aacaagctgt acgccaacat cgacaagtgt gtgttcgcag ctgaagagat 3240 caaggtcctg ggctgcttcg tcagcagcgc cggggtccgg gtggacccag agaaggtgaa 3300 aaccatcgcg gcttggccgc cacctcggtc gcagaaggac ctacgacagt ggttgggcct 3360 cgccaactac ctgcacaagt atagtgcagg ctacgccgag ctggcacggc ccttgtcgga 3420 tctcctgaag aaggatgtcg actggcgctg ggagcgtcgc catcaagatg cttttaacga 3480 catcaaagcg agcttacagt gcgcgccagt cctggcattg ccggacaaga cgaagccttt 3540 cagcgtagtc tgtgatgcgt ctgactacgc aattggctgt gcgctattgc aggccgacga 3600 tgaaggccgc gaacgggtca tctcgttcca gtccaggcag ctcaaggcag ccgaacggaa 3660 ctatccagtc cacgacaagg agctacttgc catgaagtac gctcttgtca agttccgagt 3720 gcacctcctg agctcgacgc cctttgtcgt ttatacagac cacgcgtcct tgcggactgc 3780 cgtcaacacg ccgcatctct cacagcggat ggcgcgttgg ctgtcattct tcgcagaata 3840 caacttccgt gtcgagtaca agccgggcaa gttgaacgtg cttaccgacg cgctgtcgcg 3900 ccgacccgac tacgagcttg ctcatattag tcgggcacga cggatctgta tgatcgcatc 3960 aggctggggt accgagacga tgccagtctc ggacctcttg tgcggttctt ggccgctggc 4020 tcggaagcca aggccgagtg gctcacgccc cgacaatgtg caaggctgcg ccgctatgag 4080 tgggctgacg gtttgctcca ctatagggtc gagcccgagg atcctccccg tattgtcgtg 4140 cccaacgacg aggatctcaa gtacgacatc ctgatggagg cgcacgacgc tccatccagt 4200 ggccatctcg gacgtgagaa gacgtacgcg tctgtctcgc agatgttatg gtggcgtcac 4260 atgtacaagt gggtcgccac ctacgtccgt tcgtgcgaga cgtgccagcg cgtgaagcct 4320 gccggtcacg cctcggcacc attgcagagc ctgctggtcc cagcggactg ctggaagtcg 4380 atgagtctcg actttgtctt cggacttccg gccgatgacc gtggcaacac tggtgttgtt 4440 gccttcgtgt gctgtctgag caagatggtc cactttgctc cagttcgtga caccgtcact 4500 ggcgacgagg tcgctcgcct gttcatggac tatatcttcc gacaccacgg tctgtccgag 4560 accattgtct ctgatcgaga cccgcggttc accgctacgt tctggcagac gctgtttcgc 4620 cttctcagca cacaactgtc gatgtcgacg gcggaccacc cgcagacgga tggccagacg 4680 gagcgcgtca atcgcgtgct cgaagacacg ctccgcagta tctgcgcgga gatgccccgc 4740 tcttgggctg atcggttgcc catggttgag ttcgcactca acaatgcggt acatgcatcg 4800 acgggcttta cgctctttta cctgaacggg ttgcgccacc ctcaggtgcc gctcacatta 4860 cgaggcagta ccggggcttc ggtcctaagt gggggagagg ctcggaaaac cttttcctcc 4920 caagtctcgg acgtgagtcc agccaccttg cggaagcaac tgtcctcgtt tgccgaagac 4980 aggctgaaca taatcagcag ggtgcgagac accatggcgc aagcccaata taaacagaat 5040 gagtactctg actgaaatgg aagaggaaac atgaacgtgt ttaaggttgg ggatttagtt 5100 cttctagata ctagaaacct accgctaaac actgttagct cggtcgagag caacaagctg 5160 aagcaccgct tcattggacc cttcacggtc ctcagccggc atggcgcggc gtacaccata 5220 gacttgccca agtcgatgac gactcacccg acgttttacg tgggtcgtct taagaggtac 5280 catgaccctc tggctctggc tgccccgcag gaagcggtgg gtggcccggt ggagaagagc 5340 gcagctccta gaagcgcggc gtcgggtcgc ggtaaggcgc ctgatacgcg cgctggtcgt 5400 aagacggtgc ggcgtacatc ggagcagcat acgcagggcc ccgtacgagc cctggccaaa 5460 ctggacctga tacgagtggg gctgctgctg ctccggatac ggcgcgtggt catgaagcga 5520 gctggtttcg cagcgagtcg taagacgaca ggtcggctcg acgatccaca cggccatgga 5580 gactgcgagt ttcttgatag agcgaggcaa catcctcacg gagccgctcc acggcaccag 5640 gctaccagca cgagcggcag cctcgccacc aagaccgacg ccaagcgcga tctcgaagac 5700 gtacacacgg ccccggagaa gacgaatctc ctcttgctgc agggccacca cctgactcgg 5760 ggacccagca tacggctgcg ccgcctcagg ctcgtagcca tggccgtgcg aggtcaccgc 5820 tggccctcct tgatcgtaat gggcagatcc actaccacgt ggaacgagtc gaccgggagc 5880 ggcggctcca tggcaagctc cagctgctcg tgaagtggag gggttaccct gagtcggata 5940 actcgtggga gcccgttgag cagctccagg cagactgccc gaaggctgtt gcgatatggg 6000 acgagaagca gcggcagctt cgtaagtagt ccttggcttc ttggccggta cccggggcac 6060 ggtagcagac gtagtcgcac cacgcccacg ctcttcacga gctttggctc tcgcctcttg 6120 cttcagctcg tccattttcg agtggagctt gcgcttgctc acgagttgag cgaactcgat 6180 gaggagctcg cgcacgtcca ggattgcgga cagagtgcga tgctcacgaa gttctttgaa 6240 ctcttggtcg gaataccctt tgcgctggac gtagcgccag aagaggtctt ccacctcgct 6300 ccaggtcatg ttgtcattcg gcttgaccca gtggaaaccc cactcaggat ggagtccacc 6360 cttgtcctcc ggcttcttgc gaagtgtggt gaactccttc agtgtgagct tgtgtggtgc 6420 tagtagcaca caccgggcga cttcaacgtc gccaagaaag agtggctctt ctcaacaaga 6480 gcacgctcat aggaacccct cgaggtgtac ccgccgataa ggccacgagg agccgagagc 6540 ttctccaaca gcgctggcgc accagtgcca ggctcgggcg ggaagtagcc ctgcgggtac 6600 gtggcatccc cgcctgaaga agactcgatg gcagtcgtgg cagtcggctg cctggcatac 6660 gcacccgagc tagcagcgtg gtattgctgc tgctgctcgt cgaggttgtt agagagctcc 6720 ttgggctcgt ggacggcacc ctcctcgtcc tcagactccg agtcgatgaa cagcttggag 6780 ctggagccgc gaggcgacct ggaagctgaa cgcttcttcg ccttggcctc ggcggtcttc 6840 gcagcggcag ccgctttcga cgcttgggca cgctcacgac cttgtgccag cgccagatgc 6900 ttggatgcca gcacctcctt gggcttggag cccgcgtcgc tcggcgactt ctcggccacg 6960 accccagcgt cggccatggc gacttcgtcg tgcgactgct tgctgtcgcc tgagccgaac 7020 tcggcgtcct ccgcctcctt ctctgacgag gcctttgcgt cggccgaggc gttggtcatg 7080 tcgcctgccg ccagctccgt gccttcggca gcgtgcgtgc tgccctccga gacgttctcg 7140 tcgtcgggtg aactctcacc ggagtactgg accatcgtgc agtcaaagac ggcggcttcc 7200 cagtcgcgag ccgggctttt atggccccga ggactctcct ccttgccttg cgcggcgtca 7260 ggagacttgc tccgagcccc ggcctgacgg ccactctccg gcgtgctgct acgagagcgc 7320 accacctcct cggccgcctt cgtagcctcc atcagcgcgg acgactcgtc cttggccttg 7380 gccgccctgg tcttcggccc tacggcccgc ggtttcgaag gtgatttcgc actgcgcgca 7440 ctgcgctttg gaggcatgct tccggtcgac gtggagaccc tgcggcttgc tcggcgatga 7500 gccagttgct ctgtgaggcc cgggagccga ggcgccagag ctcgcgccgt tgtcgatgga 7560 tttcgacttt gtgagtgaaa tgtgcgtcgc cggcgtaacc tcgctctgat tggtcgataa 7620 gatcgaatct aagtggggga gga 7643 // ID Gypsy-28_PIT-LTR repbase; DNA; PLN; 368 BP. XX AC AATU01002213; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_PIT_; KW Gypsy-28_PIT-I; Gypsy-28_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-368 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002213; Positions 174710 174343. XX SQ Sequence 368 BP; 80 A; 92 C; 87 G; 109 T; 0 other; tgtagtgaat cctaggtatt tcaccttggt ttccctcata gttcaacgga gacgacccaa 60 gggcgcctgg cagctttgcc atcttcaggc gatgggtctg cgtgtcttcc cagtcgggct 120 agtaaggtcc gacccgggtt ttatattagg aaccaggcca actacatatc atctttctta 180 taactttccc agcgaacttt ctgagggacg ccttagaaag aagctgataa ttgagctcga 240 tctggttacc atcagactcg agactcattc tacgatttac ccgatacaat acacttggct 300 ttaagttcca gcggggtggc tcccgctttg tcgagtgttg attggttttt cgcccgggat 360 ttactaca 368 // ID Gypsy-2_PR-LTR repbase; DNA; PLN; 417 BP. XX AC AAQX01000382; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PR_; KW Gypsy-2_PR-I; Gypsy-2_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-417 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000382; Positions 8319 7903. XX SQ Sequence 417 BP; 109 A; 86 C; 140 G; 82 T; 0 other; tgtagtgctc ggagccatca ttgggaaggc agctctcgta gagagcgtga caatgtcgac 60 cgtggcggcc ggttagtggc tgagatcatg gagagcgctg ggacgatgtg ctgccaaggc 120 agcaggcatc gacgtggtgt ttggctattg gtgtgagctt cgatgacacc tgcacgatgg 180 cagtgcaggc atggatgtgg agacgtggag actgctgaga ggaggattca cagcggtgaa 240 gcgatcgacg ggaaatcaag aggcttcaga tggtaaggag cacgaagacc gatctgaagg 300 aggagtaaga ggatcatagg gagcagccaa gggtagcagc tttaggaaac atgccggcaa 360 ggcactctaa ctccaatatc acttcgcaat ttactttcaa gcgcttaacc agctaca 417 // ID Copia-1_PSo-I repbase; DNA; PLN; 4132 BP. XX AC AAQY01000022; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PSo_; KW Copia-1_PSo-LTR; Copia-1_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4132 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000022; Positions 530 4661. XX CC Positions [1403-1903] - Integrase core CC 'GTGCG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 44..1324 FT /product="Copia-1_PSo-I_1p" FT /translation="MTTSSKKAEVILGSDNYFHWEFAMRMTLARKGLLAHV FT QVVKDPTEMTEAWMLNDMKALGLIAQGVAVEHHTKIRSATSAIQAWNTLRE FT FYNRTTMHNRVTMTCRLHEFKMEGGATMAKHLDKFDELIVGLQTLGDPFDD FT SRQLVILLSSLPAEYELIASIVENSKDVTLIEVKEKLLKEYERQEKKETSE FT RALKATSFGGRGQNWNVGKGDKAFGRKRNGGRKVGGFKGKCFNCDQVGHMK FT RDCPEKVNGDTAEASVFAVAENPSAGWLIDSGATAHMTPHRDDLFEYNESS FT ADMYMTIADGKKIRVAGKGSVRLTGIDGKRIKMVEVLHIPGLDRRLLSVGR FT LAERGMSVEFQRKSCVIWDKTKAIASGKKVGKAYLLDCQQDMVYYTEYSGV FT DGKWELWHARMGHLNGDAMAKTREATDGLPTTQ" FT CDS 1355..3463 FT /product="Copia-1_PSo-I_2p" FT /translation="MKGKQTVAHFPSRSTSATTRPLELVRTDVMGPMKTKS FT KGGARYVLTFVDDYSRHVVVYFLAKKSEVVTKFKSFMKLYENQWGQRIKCL FT RSDNGTEFVNTPMTEICRVNGIMHQKTVPYSPQQNSVAERMNHTIMEKARS FT MLHYKGVASIWWAEAVSTAVYLINRSTNSMHPTKTPYELTFKSKPRLDHLR FT VFGSMGNAHVDKSRRTKLEPKSFKCMFLGYADDSKGYRVYDLESNKVKVSR FT SVKLDEREVNGIYDMAPSENSPIIELTEDAEDAALPEEIQRPAADEPMESV FT EETVKDTEMHEVETSEPSMQELTTYRRLARPVSNDDMVFYPEPERTRRARE FT PVLLLGDGSADGEESKEDGSDDSDNDDHFWPPSPKRPRVDEDSLLAGAVLA FT YAADVGDANDAPTTYQQAMQSDESSEWVKAMNAELKAHADNGSWTLVRRTP FT SARPIGCRWVFAKKRDEHGRVIRYKARLVAKGFKQKYGVDFFETYSPVANM FT NSIRVVLSVVVAEAYITEQLDADTAFLNSGLVERVYMEVPYGIINAKNMMC FT RLQKAIYGLKQAANAWHKTIHRVFVGIGFRSCGGDQCVYVKGEKGRFVYVC FT LYVDDMIIAAKTSNEIQEVKVALKNAFKMKELGEAKFILGMEIDHDSSAKT FT LMIKQTRYIDDVVKRFNQQDAKVVVNPCDSGMTLSKTQSPMTQKEREEMQA FT KPY" XX SQ Sequence 4132 BP; 995 A; 1064 C; 1351 G; 722 T; 0 other; ggttaacagc cgcaacaagc tcaagccctc cccgacgacc gacatgacga cgtccagcaa 60 gaaggccgaa gtcatcctgg gaagcgacaa ttacttccac tgggagttcg cgatgcgtat 120 gacgctcgcg aggaaggggc tgctggcgca cgtccaagtg gtgaaggacc cgacggagat 180 gacggaggcc tggatgctca acgacatgaa ggcgctcggt ctgatcgctc aaggcgtggc 240 tgtggaacac cacacgaaga ttcggtcggc gacgtcggct atccaagcct ggaatactct 300 acgcgagttc tacaaccgga cgacgatgca taatcgggtc acgatgactt gtcggctcca 360 tgagttcaag atggagggcg gtgcgacgat ggcgaagcac ctggacaagt tcgacgagct 420 catcgtgggt ctccagacgc ttggagatcc gttcgatgac tcccgacaac tcgtcatcct 480 gctgagcagc ttgccggcgg agtacgagtt gatcgcatcc atcgtcgaga actcgaagga 540 cgtgaccctc atcgaggtga aggagaagct gctcaaggaa tacgagcggc aggagaagaa 600 ggagacctcg gagcgcgcgt tgaaggctac ctcgttcgga ggtaggggcc agaactggaa 660 tgtcggcaag ggcgacaagg cattcggccg caagcgcaac ggcggacgaa aggtcggtgg 720 cttcaagggc aagtgcttca actgtgacca agtgggccac atgaagcggg actgcccgga 780 aaaagtaaat ggagacaccg ccgaagcctc ggtgttcgct gtggcggaga atccatcagc 840 gggttggctg atcgatagtg gggcgacggc tcacatgacg cctcaccgcg atgacttgtt 900 cgagtacaac gagtcgtcgg cggacatgta tatgacaatc gcggacggga agaagatccg 960 cgtggctggg aaagggtcgg tgcgcctaac gggcatcgac ggcaagcgca tcaagatggt 1020 ggaggtgctc cacatccccg gactcgaccg gcgactactc tcggttggga ggttggctga 1080 acgcggcatg agtgtcgagt tccagcggaa gtcgtgcgtc atctgggaca agacgaaggc 1140 gatcgcttcg gggaagaagg tcggcaaggc gtacttgctg gactgccagc aggacatggt 1200 gtattacacc gagtactcgg gagtcgacgg gaagtgggag ctatggcacg ctcgtatggg 1260 acacttgaac ggagacgcta tggcaaagac ccgcgaggcg acggacgggc tcccgacgac 1320 tcaatagtag acgaagaccc tgtgcggagg attcatgaag ggcaagcaga cggtcgcaca 1380 tttcccgtcg cggtcgacgt cggcgacgac tcgaccgctg gaactagttc gtacggacgt 1440 gatgggtcct atgaagacga agtccaaggg cggagcgagg tatgtgctca catttgtcga 1500 cgactactcg cgacacgtcg tggtgtactt cttggccaag aagagcgagg tcgtgaccaa 1560 gttcaagtcg ttcatgaagc tgtacgagaa ccaatgggga cagcgcatta aatgcctgcg 1620 ctcggacaac ggcactgagt tcgtgaacac gccgatgact gagatctgcc gggtgaatgg 1680 gattatgcat cagaagacgg tcccgtatag cccccagcag aacagcgtgg cggagcggat 1740 gaaccacacg atcatggaga aggctcgaag catgctacac tacaagggcg tggcttcgat 1800 atggtgggca gaggcggtca gcactgctgt ctacctgatc aaccggtcga cgaacagcat 1860 gcacccgacc aagactccgt acgagttgac gttcaagtca aagcctcggc tggatcatct 1920 tcgagtcttc gggtcgatgg gtaacgctca tgtcgacaag tcgcgacgca ccaagttgga 1980 gccgaaaagc ttcaaatgta tgtttcttgg gtacgccgac gactcaaaag gttaccgagt 2040 gtacgacttg gagtcgaaca aggtgaaggt gtccaggtcg gtgaagctgg acgagcgcga 2100 ggtgaacggc atctacgaca tggcgcccag cgagaactcg ccgatcattg agttgacgga 2160 agatgccgag gatgcggcac tgcccgagga gatacaacga cctgccgccg acgagccgat 2220 ggaatcagtg gaagagaccg tcaaggacac ggagatgcat gaggtggaga cgtcggagcc 2280 atccatgcag gagctgacaa cgtaccgacg actcgcgaga ccggtatcga atgatgacat 2340 ggtcttctac cccgagccgg aacggacccg gcgcgcccga gaaccggtac tactacttgg 2400 agatggttcc gcagacggtg aggagtcgaa agaagatggt tccgatgact cggacaacga 2460 tgatcacttc tggccaccgt ctccaaagcg acccagggtg gacgaagaca gcctattggc 2520 tggggcggtg ctggcctacg ccgcagacgt cggcgatgcg aatgacgcac ccaccacgta 2580 tcagcaggcc atgcagagcg acgagtcgtc ggaatgggtg aaggcaatga atgcggagct 2640 caaggcacac gcggacaacg gatcatggac gctggtccgt cggacaccga gtgctcgacc 2700 gatcggttgt cgctgggtgt tcgcaaagaa acgcgacgag cacggccgag tcatccggta 2760 taaggcccgc ctggtggcga aagggtttaa gcagaagtat ggcgtggact tcttcgagac 2820 gtactcgccc gtggccaaca tgaactcgat ccgagtggtg ttgtcggttg tggtggccga 2880 ggcgtacatc accgagcagc tggatgcgga caccgccttt ctcaacagcg ggctggtgga 2940 gcgcgtctac atggaggtac cctacggaat catcaacgcg aagaacatga tgtgtcggct 3000 gcagaaggca atctatggtc tgaagcaggc ggcaaatgcc tggcataaga ccatccaccg 3060 agtcttcgtg ggcatcggat ttcggagctg cggcggtgac cagtgcgtat acgtcaaggg 3120 cgagaagggc aggttcgtgt acgtctgcct atacgtggac gatatgatca tcgcagccaa 3180 gacgagcaac gagatccagg aagtcaaggt ggcgctcaag aatgcgttta agatgaagga 3240 gttgggcgag gccaagttca ttctcggtat ggagatcgac catgactcat cggcgaagac 3300 tctcatgatc aagcagactc gatacattga tgatgtggtg aagcggttca accagcagga 3360 cgccaaggtg gtggtgaacc cgtgcgattc gggcatgacg ttgtcgaaga ctcagtcgcc 3420 gatgactcag aaggaacgtg aggaaatgca ggcgaagccc tactgagcac tcattggctg 3480 tttgctgtac attacaacgt gcaccagacc tgatgtggcg tacatcgtga cccagttgtc 3540 gcgcttcctc gagaaccccg ggcagcagca ctagaaggct gccatccgcg tgctcaggta 3600 cctgaagagc acccgagaca tcggtatcgc ctacaatggg aacgcaagaa ggtcgaggtg 3660 acggcgtaca ccgacgccga ctggggcagc aatctcgacg accgacgctc ggtgtcgggc 3720 atcatggtga tgattagcgg ggcgccgatg gtcttcaagt cgaagtgcca gcgcacggtg 3780 gcgctcagct cggcggaggc cgagtacatg gcgctgagcc tgtgcacgca ggaggtgctg 3840 tggacccgcg ccatgctcaa ggacatgagt cacggggagc tacccaagta tgggaggaca 3900 accagggcgc gatcgctctc gcaagcaacg ctggctataa cgcgaggacc aagcacgtgg 3960 acatcaagca tcacttcatc cgcgagaatg tgtcccgagg cctcatcgtc gtcaactacg 4020 tgccgacgga ggaccatgct taccaaggcg ttgaggctga agaggctcaa gtacctgatc 4080 agcgcaagcg gaatcgtcgg gacggtcgtg cagcattagc ggcgagtggg ag 4132 // ID Copia-2_HAE-LTR repbase; DNA; PLN; 372 BP. XX AC ABWE01000051; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_HAE_; KW Copia-2_HAE-I; Copia-2_HAE-LTR. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-372 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000051; Positions 62861 63232. XX SQ Sequence 372 BP; 105 A; 76 C; 98 G; 93 T; 0 other; tgttagaagt gatcaagtac gcggttggat gtgtaggtta tatgatgcat attatgcttg 60 tgaagtgcgt cgtgactgag tcaggggcaa cagattggct tagtcgtttg ggaagggggc 120 cgcgcaatcg ccttcagttt tgcatatgac acagtgaggt ttttaccgag gttttttttt 180 acaagacgta attaccaaaa ggtaggacac accacagagg gatacacaaa ggcaaggagg 240 gtaggacaga agaatgagtg gctcacagcc aatagctcca agcacacgga gccgcacgaa 300 tacaactcac tttttgcttt gaccacttta gcaacagtac cttcacctca gtagctctgc 360 agcattcgaa ca 372 // ID Copia-10_PSo-I repbase; DNA; PLN; 4684 BP. XX AC AAQY01000137; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PSo_; KW Copia-10_PSo-LTR; Copia-10_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4684 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000137; Positions 24783 20100. XX CC 'GCTTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 24..1868 FT /product="Copia-10_PSo-I_3p" FT /translation="MVKDTQVPFAGLKFNGNPNDFQRWKDAVVAHLVSKSN FT SRKISEIQAGRAAPRHGFQDLLLRPAHIADPGPDATGDARNQHEYEVALLD FT EVDSYISDMFNRTLPHTYMNQLSTPLSAQTVAAFWAQLEVDLGKSNAMGMV FT ELIMEFEKTMTEDFKSVAELFQKLRNVRNRLNRQGQETLRVHLLPSQLMIG FT KVLAMLPGHLWGPSVTFSQEEFTLEKIETKLKSIFGNKSKAEIQAMGKTSQ FT CPIEIPVNYAARGMAGPKKGPMKKSGKRKTMMLPTDDEQANTCFYCKGVHN FT DKNGSGPHFKKDCPMRKEDMAKGVGRKDIFSEPRLLKVRKTDHARAQKVQP FT APKRKEIPVDATVLQRLNINKPKANEDLPKEKAEKDQPKDEDEDEPMASDT FT AVTPTVSPKSPVVSSSAESGSEDDIDEFDGKTVVPANSVKVTAAAEELEEK FT AKAFEDTVSRLYSFLLVPITELTGNSWVLDTGCGYGLTASESVFVTKQPNS FT DYVFTFGQGSKLRNTFVGTVKLFLMSPTGVKSVQFSDIALVPHAKSNILSE FT FWLKRAGYQIVASNSGLYKFILWKHKLIFVAKSFNGAYYVQACTTKERQRM FT CNAVPIKPLTMPILTKI" FT CDS 2131..3534 FT /product="Copia-10_PSo-I_1p" FT /translation="MELLGTIRYFLSITDDQTSWRWTYVLRNKGEVNDKVK FT TLLLELEREGKFKFRRIRSDGGTEFVNQAFKSFCKSKGIKFQKSNAYCPEE FT NGAAERDHQTKMSKVRCALKDAEMADRWWPEALMYMTYVQNRMPMSRLGNK FT TPYEMVHGKPPDISDLHIWGSICFAHVPKERRQDKKLSARGIKCRFLGISD FT EYKSYRLLDVYNNRSIYSRHVMFDTQHGADIVLRAFGKEQNEENTDSTPPM FT GEAAPGSGPTRAVGEPDTEQVSDQTVGAHKQKRGLVEAVGAKPAKRSRRET FT RKPAKFGDYVCYQTHMDKVNGLEILQNKIPIPRNLKGALRGPHRKEWRRAL FT DLEYDSLIDNGTWKLVKLPPGRKTLPCHWVLVVKYHADGVIERFKARLVAQ FT GNHQEFGVDVDEVYAPVARFESLRLVLAIGTILDCYIHQMDVHTAFLNGTM FT DGDQRIYETTSGLSCTREGGLCV" FT CDS 3455..4675 FT /product="Copia-10_PSo-I_2p" FT /translation="MEPWMETSAYMRQPPGYHAPGKEGYVCELRKSIYGLK FT QAPRIWYQVLHKVLTSMGFVRCDKEFCIYVQKVGDDWVIIVVYVDDLTIMS FT KSMRLINKVKAELSMRFKMKDLGDVHYILKMEVRRNREERTMSISQHQYIL FT ELLKKYNIENSSAVATPQITGLELEPETKMTADEIAVQNFDYRGLVGSQQY FT LVRGTRPDIANAVRELSKYLSCYNKTHWEAARRVLKYLKGTSTYGLLLDGK FT SKDVTYEVYTDASFACQSKERKSITGYVIKMAGCSISWCNSKQGCVSLSTA FT EAELIALSEGAKESEWLWNLLSEMGFPQAKPVQVWCDSRSAISITTNPGNH FT KASKHIEIKYLFTRDLVDEGRLIIVYCPTASMAADILTKALPTTQFTFLRD FT KIGVKSVLPAVNT" XX SQ Sequence 4684 BP; 1438 A; 981 C; 1239 G; 1026 T; 0 other; tttcaagtac tgagtgctcg aagatggtca aggacaccca agttcccttc gcgggcctta 60 agttcaatgg gaacccaaac gacttccagc gatggaaaga cgccgtggtc gcacatctcg 120 tgagcaagtc caacagccgc aagatctctg agattcaagc cggaagggct gcgccccgtc 180 acgggttcca ggatttgctc ctgcgtcctg cccatatcgc agatccggga ccagatgcta 240 cgggtgatgc tcgcaatcaa catgagtatg aggtggctct gctggacgaa gtggattcct 300 acatcagcga catgttcaac cggaccctgc ctcatacata catgaatcaa ctgagtacgc 360 cactctccgc acaaacggtt gcggcgtttt gggcgcaact tgaggtcgac cttgggaaaa 420 gcaacgccat gggcatggtg gagttgatca tggaatttga gaaaaccatg actgaggact 480 tcaaatccgt ggccgaactc tttcagaagt tgcgcaacgt gagaaaccgg ctgaaccgcc 540 aagggcaaga aacgctgcgt gtgcacttgc tgccaagtca gctgatgatt gggaaggtgc 600 ttgcgatgct accgggccat ctttggggac ctagcgtcac attctcgcag gaggaattca 660 ccctggagaa aattgagacc aagttgaagt caatcttcgg caacaagagt aaggccgaga 720 ttcaggcgat gggcaagacg tctcagtgcc cgattgagat tccggtcaac tacgctgcca 780 gaggaatggc tggcccaaag aagggaccga tgaagaagtc cggcaaacgc aaaacgatga 840 tgctgccgac ggatgatgag caagcgaaca cctgcttcta ctgcaaaggc gtgcacaacg 900 acaagaacgg gagtgggccc cacttcaaga aggactgtcc tatgagaaag gaggatatgg 960 ccaagggcgt cggtcgaaaa gacatcttca gcgagcctcg cctgctcaaa gtgaggaaga 1020 cggaccatgc acgtgcgcaa aaggtgcaac cggctcccaa gaggaaggag atcccggtgg 1080 atgctacagt ccttcaacgc ctcaacatca acaagccgaa ggcgaatgag gatctgccga 1140 aggaaaaggc ggaaaaggat caacccaagg atgaagatga ggatgagccg atggcgagcg 1200 acactgcggt cacgccgacg gtaagtccta aatctccggt ggtgtccagc tctgcagaga 1260 gcggcagtga ggacgacatt gacgagttcg acggtaagac tgtcgtgcct gccaacagcg 1320 tcaaggtcac agccgccgct gaggaattgg aagaaaaggc gaaagccttc gaagatacgg 1380 taagccgact gtattccttt ttattagtgc ctatcactga gctaacgggc aactcatggg 1440 ttttggatac aggatgcgga tatggattga ctgcaagcga gtcggtcttc gtgaccaagc 1500 agcccaactc agactacgtt tttacatttg gccagggctc taaactgaga aatacatttg 1560 ttggtactgt taagttgttt ttgatgagtc caacaggagt taagtcagta cagtttagtg 1620 atatagcact agtaccacat gctaagtcaa atatcttaag tgagttttgg ctaaaaaggg 1680 caggttatca gattgtggca agtaacagcg gactgtacaa gttcatactt tggaagcaca 1740 agttaatatt tgtagcaaag tctttcaatg gggcatacta tgtgcaagcc tgcactacaa 1800 aagaaagaca gagaatgtgt aatgctgttc caattaagcc attgactatg ccaatcctaa 1860 ccaaaattta gagcctaatg agagaatggc atgtgcgtct aggacacgta aataaggata 1920 aactgattga gataatgagt aaccagcttg taaaaggaat accgtatatt gagggctcta 1980 agctaagacg aataaacttc ttctgctcca cttgtgcaga aatgaagatg agaagaatgt 2040 cataccgaaa tctgaagggt tccagagatg aacaacctat tagtaccatc cacatggata 2100 caaacggacc catgaaaaca atgggagtct atggaactgt tgggaaccat tagatacttc 2160 ttgagcatca ctgacgacca aacatcctgg cgctggacct atgtgttgcg caacaaaggg 2220 gaagtcaatg acaaagttaa gacgttgctt ctcgagttag agagagaagg caagtttaaa 2280 ttccgacgca taaggtcaga tggaggaacc gagtttgtga accaagcttt taaaagcttt 2340 tgcaagagca aggggatcaa atttcaaaag tcaaacgcat actgcccaga ggaaaatgga 2400 gcggcagaac gcgatcacca aactaagatg agcaaagtgc gctgtgcact aaaagatgct 2460 gagatggctg atcgttggtg gccagaagca ctgatgtaca tgacctatgt gcaaaacaga 2520 atgcctatga gtcgtctggg taataagacc ccatacgaaa tggtgcacgg taaaccacca 2580 gacataagtg accttcacat ttggggaagt atatgctttg cgcatgtacc taaagagcga 2640 agacaagata agaaattatc tgcacgaggg ataaagtgca gattcttggg aatatcggac 2700 gagtacaaga gttaccggct tttggatgtg tacaacaacc ggtccatata ctcaaggcac 2760 gtaatgttcg acacacaaca cggggctgat atagtgttgc gtgcatttgg aaaggaacaa 2820 aatgaggaga atacagactc taccccacca atgggagagg ctgcaccagg ctcagggcca 2880 acccgagctg tgggagaacc cgatacagaa caagtgtctg accaaacagt gggagcacat 2940 aagcaaaagc gagggttagt agaggcagtg ggagccaagc cggctaaaag atcacgccgt 3000 gaaacacgaa aacctgctaa atttggggat tatgtgtgct accaaaccca catggacaaa 3060 gttaatggcc tggaaattct ccagaataag ataccaatac cccgcaacct taagggagca 3120 ttgcgaggac cacataggaa agagtggaga cgtgcacttg atcttgagta tgattcccta 3180 atagacaacg gcacttggaa gctagtaaag ctgccacctg ggagaaagac actaccgtgt 3240 cattgggtac ttgtggtaaa ataccatgct gatggagtaa tagaacgctt taaagcgcga 3300 cttgttgctc aaggaaatca tcaagagttt ggagttgatg tagacgaggt atacgcccca 3360 gtggcgaggt ttgagtcctt acgccttgtc ttagcaattg gcaccattct agattgctat 3420 atccaccaga tggatgttca cacagcattc ttgaatggaa ccatggatgg agaccagcgc 3480 atatatgaga caacctccgg gctatcatgc accagggaag gagggctatg tgtgtgagct 3540 gcggaaaagc atctatgggt tgaagcaggc tcctagaatt tggtatcagg tgctgcataa 3600 agttctcaca tcaatgggtt ttgtacgttg tgataaggag ttttgcatct acgtacaaaa 3660 agtgggagat gattgggtca tcatcgtggt atatgtcgat gacctgacga tcatgtcgaa 3720 aagtatgcga ctgatcaaca aagtcaaagc ggaactatct atgagattta agatgaaaga 3780 cttgggagat gtccactaca tcctcaaaat ggaagtccgc agaaacagag aagaacggac 3840 aatgtccatc tctcaacatc agtatatatt ggaactactg aagaagtata acattgagaa 3900 cagctcagct gtagcgacac ctcagattac aggtcttgag ttagaacctg aaactaagat 3960 gactgcggat gagatagcag ttcagaattt cgattacaga ggtttggttg ggtcgcagca 4020 atacctagtg agaggtacta gaccagatat tgctaatgca gtgagggaat tgagcaagta 4080 tttgtcctgc tacaataaaa cccattggga agcagctagg agagtactga aatacttgaa 4140 agggacgtcg acgtacggtc tattacttga cggaaagtca aaggacgtaa cgtatgaggt 4200 gtacacagac gcaagcttcg cgtgtcaatc aaaagaacgt aaatcaatca cgggatatgt 4260 gattaagatg gctggctgca gtatatcttg gtgcaatagt aagcaaggat gtgtttccct 4320 atcaactgca gaagcagagc ttatcgcatt gagcgaaggt gcaaaggaaa gcgaatggtt 4380 gtggaacttg ctatcggaaa tggggtttcc tcaagcgaaa cctgtgcaag tctggtgtga 4440 tagcaggtct gctatcagta tcacaacgaa cccaggcaac cacaaggcta gtaagcacat 4500 tgagataaag tatttgttca cacgagactt agtagacgaa ggccgtctga taattgtgta 4560 ctgcccaaca gctagcatgg cagcagacat tttgactaag gccctaccta ctacacaatt 4620 tacatttttg agagataaga taggtgtgaa aagcgtacta ccagcggtga acacttagtg 4680 ggag 4684 // ID Gypsy2-PP_LTR repbase; DNA; PLN; 1582 BP. XX AC scaffold_12; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-PP; KW Gypsy2-PP_I; Gypsy2-PP_LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1582 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 426-426 (2008). XX DR Genome; scaffold_12; Positions 911743 913324. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX SQ Sequence 1582 BP; 486 A; 277 C; 402 G; 417 T; 0 other; tgtggtgcct aggaaaatca tttattttaa attttgtaga aatagattag gaaagatctg 60 aagaagaagc tgttaagtaa gaagatagga gataaacagt gaattaggaa tatagtgtta 120 gaagactgaa gagaaggtca aaatcccgaa gatggttatc ttgaagatct tcggaaattt 180 acatttggaa gatgaccttc aaacagacct tcgaccttcg agattagcta tcttctagat 240 tttacactta gtaggataga gttagagttt attggagaaa acctttttgt acattttccg 300 aaggcgaagg acctccaacc catttcctaa aggaagatga gctagtccga agaccagaag 360 ttaggaatta ttggcaagct cttcaagcga aggattgcag attcatagcg acaggaatcg 420 tagacttaga agatgtggat ttcgtgcagt caccgaaagg aaaacgtaag agcggagctg 480 taaccacgac acgcaagaaa cgaaggcagc aacccgaaga tgtgccctcg gatcagacaa 540 ttcggatgga cgggcaggac caacctgaag atgaggtcgt ttctcacccg catgtgcagg 600 aaactgaagg tgagaagagc ggaggtgcct ttcgaagggc cttcggaaga gccacaaaga 660 gcaggacgtt cggaagcaat ttcggaagca accccacagg gagatcgaag atttgaaggc 720 cttcaaccag cgagctgaag gaactctgga acgggctagg aagatcgatg aagaacggaa 780 ggcgacagta gtagcggcac agaaggctct tgagaatctt ttaagagtct cagttgacac 840 attttctact aagacagaag gtactggacc ttcatgtact tagtaaaaca gacctttgac 900 cttcgacctt cgagattagt gtatccacag ttataacaga ttttagttag ttagttagag 960 gtaggtagtt agacctttcc gaactggagt agtataaata gagagggatc taaggaaatt 1020 aggatccttt gttccggtgg ctgtagctat tgaaggttga attaagattc cctcgtcgat 1080 actctgagac tcaagtagct tggtgctcat ctcttttggt agttgaagct ctgtgggagt 1140 aagtccctgt acatagtgaa gatccttgtc ttggaggcaa gaatagttgt gtggcatcca 1200 tagtagcatt gaaggtagca cacttcgagg aaggtgttat ttccttgcag tagactgcca 1260 aatcgagagg acctgccttc agattgagtt tctgagctcg gaataaagtg atcatccatc 1320 tcaagagact ttgtttcatt ccagataaga gaggatttga gtagaaaaac tagaagattg 1380 tgtatctgaa gacttgttta gaactggcct tcaactcgtt gggttatgtc tatcacccag 1440 gagtctaaac taagagtgaa gtgactgaat gaagaagatg tggcatattt gcaagctatt 1500 tgagatcttt gaccattttc ctcgtgggat cgacctgtat tcaccatata cctacaatct 1560 tgtggttttg tgagtcatta ca 1582 // ID Copia-20_PIT-LTR repbase; DNA; PLN; 164 BP. XX AC AATU01000550; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-20_PIT_; KW Copia-20_PIT-I; Copia-20_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-164 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000550; Positions 12407 12570. XX SQ Sequence 164 BP; 39 A; 41 C; 40 G; 44 T; 0 other; tgttgagatt tggtcgacag ttgaagtcaa agatagcagg actgggagga tgtttggacc 60 caggagagtg gttttacctc ccagacccag cggttacgaa acctacgggc tgctcggcca 120 tgaatgcctt caatatcact tcctcatttc ctctcttcat caca 164 // ID Gypsy-21_PR-LTR repbase; DNA; PLN; 357 BP. XX AC AAQX01003198; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PR_; KW Gypsy-21_PR-I; Gypsy-21_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-357 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003198; Positions 2298 1942. XX SQ Sequence 357 BP; 80 A; 92 C; 115 G; 70 T; 0 other; tgatctgcag ccatgcagca acggtgtcga cccgcctccg tccgccaatg ggcggcagcc 60 agcagacagc gagtggcaga aggctgaagg tgactctggg ttctgggttg tgagatctca 120 gccgggctgg aatatcattt ctaatttgta cccaccgagg cgtcgcactg ccactggcag 180 tctgccagtg cggcactggg gaagtttgta gtagcggcgc accatggcta gcgttagaag 240 gagggcacgc agtgcaggca aattctaacg gagctcaaat acatgtcagt ttgaaatttc 300 ctccctagtg cgcaatagag gaggtggctg gggctagccg agcgccgagc cagaaca 357 // ID Gypsy-33_PIT-I repbase; DNA; PLN; 5001 BP. XX AC AATU01001197; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-33_PIT_; KW Gypsy-33_PIT-LTR; Gypsy-33_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5001 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001197; Positions 26644 31644. XX CC Positions [3813-4307] - Integrase core CC 'ATGTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 2916..4955 FT /product="Gypsy-33_PIT-I_2p" FT /translation="MDASDYAVGGYLYQLDADGKERVIAYNGRKLNRAELM FT YPTREKELLAALHAMRVWRVYLVDKPFFVNTDHRTLQTILEQKTCSQRLAR FT WLNELGLYQPLFRWIPGDTNIVADAIFRNSAFQPKVSTHYVSLASLLRQLT FT TAHETEDSGGDVYLHYARSRPSILEQCTQLYPEDSVFGPLYQLLQSSQVDE FT TTPPVELHRRIRANINHFFLEDDILYFQPRADAPRRVCVPDSQDLKDAIIY FT EHHNVASSGHPGCLKTLLALQDKFYWLHMEKTVKRYVTTCEMCQRIKVSQR FT KPAGLLHPLEIPDRRWSQITMDFITGLPRSRHGLYDAVWVIVDRLTKRAHF FT IPTTTTCTAEETAKIFRDQYQRLHGLPDTITSDRDSKFTSTFWSKLMKFQN FT TQLQLSSAFRPDTDGQTERTNHFIADYLRAFVSPLQTDWSELLSLAEFAYN FT SRAHSSTGMTPFVADLGYNPRYVSEIALPTRRGQAQSSIRFVEHQQAVLQQ FT CQDAIEVAQATMKFFHDRNRPTHHFEPGDQVLLDTTNLDLPHVGVSGKRKL FT APRFIGPYPVVQSTTPDTYKIGLPPGIRIHDEFHVSYLRSYHFDENPRHLN FT DVPRLITREGHEGFQVQAIVGKKVRRGTLHYKVRWYGRDVNDSWEPATNLT FT QAQGLIDIYEKIHQSSRPRRSTRHSTPSAPR" XX SQ Sequence 5001 BP; 1340 A; 1309 C; 1203 G; 1149 T; 0 other; gttaattaac ttttgaagcg tgacgtcgtt tcaagacacc aggactcgat caatacacca 60 tggttcgcgg tcgcagtcca aacccaagac ctcgacaaac ccgtcgaatg agagaggaag 120 atgcacctgg caacgagcct ttgcacgatt ccaactcgtc ccaagaagcc cagcacgatg 180 ctggcaacac tggtgaagca gcccagcagc aaccgcctcc agcacctggt agcgcgccgg 240 ctgcagaggt ccccatgctt cgtcagatgt tcgaattcct agctacgacg cagcagcagc 300 agcaacagca gcagtttgct cagttaatgc aacaacaagc gttgtttcag cagcaacaac 360 agacaagttc ccagaaacaa caaaagaaaa agggaaaccc gccaatgttc aatggcgaat 420 caagtgacga cttggagcta tggctcttta gtacagagca gtactactct gactgtcagc 480 tcgacatggc cagcaacact tctgagttca tcagcttaat ttttggcaat ttgggtacat 540 cggcacgtac gtggtaccgc gactttaagg tatcactcgg agagaatcca gcgacgtggg 600 ctctattcaa acagtaaata cgagagcgct ttcgagactc tgacctccag cacaaactct 660 tatccaaact ctaccatctt cgttggacgg gatcccagca ggcctacacg acacgaattt 720 aacacttact ctctcagctc gatgaggact tgccggagga agtcaaacgt tggtttttcc 780 agcagaactt acggcccgag accagtgctt ttgtgtcaca gaatatccct gatacgctgc 840 acaaggcaat tgaattggcg cagaggtttg aagattcgct ccctgccagc gacaagaaca 900 ttaggagcga caaggccaaa aatcgtaact taggggctcc ccaatcgact tcaaaggaac 960 agccgaagca taatagcggt ggtaacagag cgataaacga ttcgaggaag aatcacgact 1020 cttcagacaa gccagtctgt aactactgcg agcgcgtagg tcacaccgag agcgtctgcc 1080 ggaagaagaa ggcggcggag cgggtgacga cgccaaaaaa cgcgtaggct cgatgggttg 1140 gcagcctgtc gggccgactt catcgaacgg cgatggccat acgtcgttcg gtagcccaca 1200 ctctctgtca ctgcatctcc aacctggaca tcgcggtaca agagacaaca tctatggcta 1260 tctggcaaag agagctcgca tcgaaggctc tgctgtggac gtattcactg atagcggtgc 1320 ctccttcaac gctatctcac cagtggttgc gtccagatta gccttgacca ttaaagaatc 1380 ggacaagcca ctgaagatca agctcggtgt caagcgtaca tcagtattcc tcggcgcaca 1440 gctgaaatcg tgctcgacat ggacggattc cctccttact cgacagaagt tttcgtcatg 1500 gacgttccgg aggacaaaca tgtattgctg ggggtaccgt ggcttgtcaa gattaatccg 1560 gacatcgatt gggtcaccaa atcaatccgt ccacgggggg cgacatcatt aacgccattt 1620 cgacaatgtg tgcgaaatgc tgcttgtata aaggctgcag gttgtcgacg ctctctcaca 1680 aggcgtactc gatctcaagg agacgcgact gtgctcttct acgctcgaca cagctatcta 1740 tcccgccacg gagctaccaa gattatcaac cagaggcagt tccggaagat aaaaccatca 1800 gaaggagaat tttgttttat ggtccatatt gccgaaccgg agccaataga gaaggccacc 1860 cggcaggact gggacaagat caaaggatca cctgtggaac cggtggtaat gaagtacaaa 1920 gacaccgtgt tccgcatgca actacctaat cgcccaccac agcgctcagc ggatattgaa 1980 gctgaagttg agcttgtcga cgacactcca gtagcaagga agcagtatca gctcagcgaa 2040 gaaatgaaac ggaccatacg gcagtggacg aaggagatgt tagacgcggg tattatcagg 2100 ccgtccaagt ctccgtactc gtcgcctaca ttttgcgtcc gaaaggcagt tggctggcgc 2160 attgttcacg attttcgagc aattaacagc aaaattcgca ttccagccac gccaattcct 2220 cggaaggaag acatcttcga tgcaatggcc aacggtcact ggttttctgc attagatctt 2280 ttttgaggat ttttccaggt ccggctacgg gaatcagata ttccgtacac agcattttcg 2340 actctagacg gccagtttga gtacttggtc acgccaatgg gactatcgtg cagccctctg 2400 cctttaatcg gttgatgcag catgttttca gtgatcagaa agccttctgt caagcttact 2460 ttgatgacct cttcattttc acgaagtcaa ccgcgatcga agaccactta cgtgcactgg 2520 atgctgtctt gcagtgctgc caggatcaag aactctacgt gaagttggca aaatgcacgt 2580 tttgctccgc ggagattccg tgtcttggag actactttgg gcgcgatggc gttcgaatgg 2640 acccagacaa gatccgagtt aaacgcgagt ggccaccgcc taggacaaag cgcgagctgc 2700 aatcattcct ggggacctgt gtctatgtgt tgaaattctg cgagaattac gcggacatat 2760 cagcaccact cgtcgaagcc accaaaggaa aaacagcaca ggagtagatt caacttacgc 2820 cggagcaacg tgattgtttt accaaattga aacctgtgct gacatcgcca ccggtcttag 2880 ctcaccccga ttcgtcaaag gatttccaca tccggatgga tgcttcagac tatgctgttg 2940 gagggtatct ctatcaactt gatgcggacg gcaaggaacg agtaattgct tacaatggac 3000 gaaagctcaa tcgcgctgaa ttaatgtatc ccacgcgcga gaaggaactg ctagctgcct 3060 tgcatgcaat gcgcgtttgg agggtttacc tcgtcgacaa gccatttttc gtcaacacag 3120 atcatcgaac tctgcaaacg atattggagc agaagacttg ttcgcagcgt ctcgcgcgct 3180 ggctaaatga gctgggatta taccagccat tgtttcgttg gataccaggc gacacaaaca 3240 tcgttgcgga cgcaattttc cgtaattcgg catttcagcc aaaggtgtct acacattacg 3300 tgtctttagc cagcttactt cgacaactta ctacagctca cgaaactgaa gacagtggcg 3360 gagacgttta tctgcactac gctagaagcc gaccctccat tctggagcaa tgtacccagc 3420 tctaccctga agactccgtg ttcggtcctc tatatcagct tctgcaatcg tcccaagtag 3480 atgagaccac accgccagtg gagcttcacc gccggattcg tgcgaacatc aaccatttct 3540 ttctcgaaga tgacatcctg tactttcaac cgcgtgctga cgcacctcga cgagtttgtg 3600 tgccggacag ccaggatttg aaggatgcta tcatttatga gcatcacaat gttgcttcca 3660 gtggccatcc tgggtgtctg aagactcttc ttgctctcca agacaagttt tactggttac 3720 acatggaaaa gacagtgaag cgatacgtta ctacttgcga aatgtgccaa aggatcaagg 3780 tatcgcaacg aaaaccagcg ggcttgcttc atccgttaga aattcctgac cgtcgatgga 3840 gccaaattac tatggatttt attaccggcc ttccacgttc tcggcacggc ctctacgatg 3900 ctgtatgggt aattgtcgac cgtcttacta agagggcaca ttttattccg acgaccacta 3960 cttgcacagc ggaagaaacg gccaaaattt tccgagacca ataccagcgg ttgcatggcc 4020 taccagatac tatcacttcc gaccgcgaca gtaaatttac gtctacattt tggtcaaagt 4080 taatgaagtt ccagaacaca cagctgcagc ttagttcggc atttcgacct gataccgacg 4140 gacaaacaga gcgaaccaac cacttcatcg ctgactactt acgagcattt gtatcgccgc 4200 tgcaaactga ctggagcgag ttactatcgc tagcggaatt tgcatacaat tcgcgggctc 4260 actcaagcac cggcatgaca ccatttgtgg cagatcttgg gtacaacccc agatacgtga 4320 gtgaaattgc cttaccgact cgaagaggtc aagcacaatc ttcgattcga tttgtggaac 4380 accagcaagc agtgctccag caatgccaag acgccattga agtcgcacag gcaacgatga 4440 agtttttcca tgatcgtaat cgtccgacgc atcacttcga gcctggtgac caagttctac 4500 tggatacgac taatctcgac ctgccccatg ttggtgtatc tggaaagcga aaactcgccc 4560 caaggtttat tgggccatac ccagtagtgc agtcaacaac gccggatacc tataaaattg 4620 ggctaccacc gggaattcgg atccatgacg agtttcacgt ctcctatttg agatcgtatc 4680 acttcgatga gaatccccgg catctaaacg acgtgccacg gctaataaca cgcgaaggtc 4740 acgagggatt ccaggtacaa gcgattgtag ggaagaaggt gcggcgaggc acactgcatt 4800 acaaggttcg ctggtatgga cgagatgtca acgactcatg ggaacctgct actaatttga 4860 cccaagctca aggtctgatt gatatctacg aaaaaataca ccaatcctcc agaccccgtc 4920 gttcaacacg ccactcaacg ccttcggctc cccgataatt tttgctgttt aagaagctat 4980 gctcctcttc gggggaaaga t 5001 // ID Gypsy-6_PPa-I repbase; DNA; PLN; 6898 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-6_PPa-I; Gypsy-6_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-6898 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 965-965 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 653..6757 FT /product="Gypsy-6_PPa-I_1p" FT /translation="MFPKTRSQKPTLNQGLERIGRRGGKVVDNKEAAPSRN FT TLINSRSNEEFLGGDIRRNLEKALGDVGGSELLEELEVEELEIEHVDPEDG FT VFGDVNLREIGEQDRTLDFVPAVEGFVHEMATERLPALDPLVRPRGLPVAM FT PAGLLAATVPGNLPKFYGTKDEDPTLHMERYIEILTTSLIGNEGYYLVWFP FT GTLHGEAYNWYRDHDEGHFTTWSQLQVAFLNHFRPEVGQSTALRALGAVRQ FT QRDEEMANYIRRFDLVCMRYVGGLLNGDTLKQFFIEGFANRSTIKGVLERN FT PATLEEAKTAARVVDLIERSYERHWRKEDESIPGFIPINPVSQAVGPSTSS FT TPPIVDNGAQYYNVMPTATRAPVPLLALPEPQLERRVEDLEKKIQAGQEGF FT QDSMMKQIQALTEQMAFMVKNQNSNTPPPRIESGNHNSGVWCTTCGQNGHS FT SLQCRVRPQGNPNPQPYQPTQGYGRDRGPQQRQGGYQGGPQGYGRSGKPRK FT EYHELCRRWHEPGQCWDDGQPWPCGNCGGNHPTHECRQPDKVIQLPPPITN FT PYENARNNMRDQRRPHGDDQRGLKPPNLYYNYEDFRQNHQPPEGLQTRQGY FT IPVAQNQQGGYRNYANQKQGPSSNQDVRVAEEVLLKGPAPSLAKTTVVIEE FT HEAPSNLVTHELKKDGGGGHENATLAVITRGQAHRQSPIDEEDSDSSESEE FT LLDLVALEAAAKEAARITREVGAAVGDERSSEGSDPGKGLEPGEWEGPDIP FT EEEFGGLGRTTPTSYQKYDLWRDLRRIKADISIAQLLEISPLMRKSFKEGL FT PRAKRKKKTQKRTVARVQASIRPVDVKAVEIEVTIVDKVVPNVLIDGGSGL FT NIMPLHTMEKLGLNLTGPSPFVLNMADQSPARPLGQITNCKISTGGEDYLV FT TFHVIRMHTSKESFPLLLGRPWLRMANATIMWGGDKPSIVYGPYENPTKVR FT IKPLIGLEVVDTISIGEGTPLKSVDGMTFEAEVQTLKCLGPNLYHWSDNGE FT YAKWLQDNPDSSSELTAGLNFIGMELDDGLTPLIEVDVHLIGIEDVEGVEV FT LEESEHLGGSLKFKTGSSGITVGEDVFSYPNVPSDWYRDNNEQSHVAKEDW FT KFVTVEFEGEEPRQMKMGSQLEDEEIKAYCELVREYREVFAWSYKELKGIP FT PEIVEHRIPLMTGAVPIRQKERRMNPQLQLIVKEELEKLLQAGFIKPVEIT FT DWVSPMVLVKKKNGKLRVCVDYRKLNFCTQKDHFPLPFITSILEEVAGHDL FT YTFMDGYSGYNQVSIAPEDRHKTAFTTPWGTFVWHVMPFGLCNAPATFQRL FT VMSIFSDLLYKSMTVFIDDFSTQSDADSHIHLVKESLERCKKARMALNPEK FT TYLALTRGILLGYMVSKRGREPEPEKVKVIQNLSPPTSVKEVQRVLGHTGW FT YRELIEDYATITLPITSLQKKGTKFIWTQACNDAFEVLKKELSSYPILRPP FT RWDLPFHIYCDASAVAVGSILCQLVEGPSKGKDHPIAYASRQLNLAEKNYS FT TTERECLAMVFSAKKFRHYLLSNKVVFYVDHMAIKYLVNKPELSGRLARWV FT LLLQEFDYTVEYKPGSVHKQADHMSRLPGGMETHPIDDRLIDESLFLVTAR FT PAWYSRIIEFLTTQQLPVDLSKDERRKIRVNSRHFVVLGNRLYRRGLDGVL FT RRCVMEDEVPSILSACHDSACGGHFSGQLTGQKILRAGYYWPTLFKDAHTY FT VRRCDACQRFARNDLHMQLPLHISLPLVPFEKWGIDYVGEIHPHSSRGMAY FT IVVATEYLTKWAEAKAVRTNDAKNAAIFLFENVITRFGVPKILVSDRGTHF FT LNEVIESMTERFQIDHRKTTPYHPQTNGQTERVNQTLGTILRKTVRDSKRD FT WDVKLPAALWAYRTTFKVTTQATPFSLVYGLEAVLPIEFEVPSLRIAVDSR FT LTDRQSLKTRLYELEALDESRRRGAQHIEAIQRRRKVVFDKRNKTRVLQPG FT MLVLLQDARKIDFPSKFDAVWLGPYLVKEVFLNNSVQLETLNGQLFPTRTS FT GSRCKEYKT" XX SQ Sequence 6898 BP; 1972 A; 1324 C; 1852 G; 1750 T; 0 other; taaatggtgc gtttgccggg agccgatctt agagacgttg tctaacaatt tttttttttt 60 tttttttttt ttttttgagt tgagatgatt gattacatgg aggaaggaga taataggagc 120 aagatgatgg ggtcgtgatt ggaaggagca cagcagaagg tatgtgggtc ctggggatat 180 ctatggtagt ttgtgctaga aaccttagca tgtgatcgag aggccggtgg tatactaatt 240 gtgcaggaag ctggaattgc atgaggtaag ccatcataca ttgaatgatc tatgttaact 300 taggattgta attcgtcgtt gtcgttgcct tgttagtggg taatgcctcg gcagtgagct 360 gaattgagaa cgaggggggt tctggccgcg aaggcagaat cacagtgtct cgtttactga 420 ccgggtaagc cccacaacat aggttgtacc gtatgccaag attggactag cgggctggtt 480 tgccttggtg aattccatgt catcgcccgt aaatactatc ttggtggttt gcgttcccta 540 cccacctgag ggtaggctag attattaatt atcaatttaa aaatttcaaa aaaaaaaaaa 600 aaaaaaaaaa tgggttggta ggtaatgaga gaaggtcagt gaggacgttt agatgttccc 660 gaaaactaga tctcaaaaac ctactttgaa ccaaggactt gaacgtattg gaagacgtgg 720 gggcaaggtc gtggataaca aggaagcagc cccttctcgg aatacactca ttaatagtag 780 aagcaatgaa gaatttcttg gaggagacat tagaaggaat ttagaaaagg ctttaggaga 840 cgtcgggggc agcgagctat tggaggagtt ggaagtggag gagttagaga tagaacacgt 900 agaccctgaa gacggagtgt ttggagacgt gaaccttagg gaaataggag aacaggatag 960 gaccttggac tttgtgcctg cggtcgaagg atttgttcac gagatggcga cggagcggct 1020 tccagctttg gatcccttag ttaggccacg aggtttgccc gtggctatgc cagcagggct 1080 attagcggcc acagttccag ggaatctccc caagttctat ggcaccaagg acgaggatcc 1140 aaccctacac atggagaggt acatagagat tttgacaaca tccctcattg ggaacgaggg 1200 gtattacctg gtttggttcc ccggaacctt acacggtgag gcttacaatt ggtaccggga 1260 ccatgatgag ggacatttta ccacgtggtc ccagttgcaa gtagccttct taaaccactt 1320 taggccggag gttggacaaa gtacagcctt gagagcactg ggagcggtac gacagcaaag 1380 agacgaggaa atggctaact acatcaggag gtttgacttg gtctgcatgc gttatgtagg 1440 aggattgttg aatggcgata cgttaaagca attcttcatt gaaggatttg ctaatcgatc 1500 tacaatcaag ggagtattag agagaaaccc agccactttg gaggaagcca aaacagcggc 1560 gcgcgttgta gatttaatcg agagaagtta tgaaaggcat tggaggaagg aagatgagtc 1620 tatcccgggg tttattccaa ttaatcccgt aagccaagcg gtaggaccaa gcacgtcaag 1680 tacacctccg atagtcgaca atggtgccca atattacaat gtcatgccca cggccaccag 1740 agctccggta cccttattgg cgttaccaga gccacaattg gagaggagag tggaggactt 1800 ggagaagaaa atacaggccg gacaagaagg ttttcaagac tccatgatga agcagatcca 1860 agccttgact gagcagatgg cattcatggt aaagaatcaa aattcaaaca ccccacctcc 1920 tcggatagag tctggtaacc ataactcggg ggtttggtgc actacttgtg gccaaaatgg 1980 gcattcatct cttcagtgcc gagtaaggcc tcaaggtaat ccaaatcctc aaccatacca 2040 gccaacacag ggctatggaa gagatagagg acctcagcag cggcaaggag gttatcaagg 2100 tggtcctcaa ggatatggta gaagtggcaa gcctcggaag gagtaccatg agctttgcag 2160 gagatggcat gagccgggtc agtgctggga tgatggccaa ccatggccgt gtggcaattg 2220 tggtggcaat caccctaccc atgaatgtag acaacctgat aaggtaattc aactaccacc 2280 accaataaca aatccttatg agaacgcgcg gaataacatg agagatcaga gacgacctca 2340 tggtgatgat cagaggggcc taaaacctcc taatctctac tacaactatg aggatttcag 2400 acaaaaccat caacctccgg aagggttaca aacccgccaa ggttatatcc cagttgccca 2460 aaatcaacaa ggcggctatc gaaactatgc aaaccagaaa caaggtccat cttctaacca 2520 agatgttaga gtagcagaag aggtcttatt gaagggtcct gcgccatctc tagcaaagac 2580 cacagtggtg attgaagaac atgaagcacc ttctaattta gtgacccacg aattgaagaa 2640 agacggaggc ggtggccatg agaatgctac tttggctgtg attacccgag ggcaagctca 2700 taggcaatca ccaatcgatg aagaagactc agatagtagt gagtctgaag agttgttgga 2760 tttagtagct cttgaggcgg ctgcaaagga ggcggcaaga attacaaggg aggtaggcgc 2820 cgcggtaggt gatgaaaggt catctgaagg ctctgatcca ggtaaagggt tagaaccggg 2880 tgaatgggag ggtccagata ttccagagga ggagtttgga gggttgggtc gtacgacgcc 2940 aacctcttac cagaagtatg atctctggag ggacttgcgg aggataaagg ctgacatctc 3000 aattgctcaa ctattggaga tatctccttt gatgaggaag agtttcaaag aaggattgcc 3060 tagggcgaag aggaagaaga agactcagaa gaggacagtg gctagggtac aagcatctat 3120 taggccagtg gatgtgaagg cagtggagat cgaggtcact atcgtggaca aggtggttcc 3180 gaatgtgctc attgatggag gtagtgggct taacatcatg ccacttcata ccatggagaa 3240 gttggggttg aatttaaccg gaccttcacc atttgtatta aacatggcag atcagagtcc 3300 tgctaggcct ttaggccaga tcacgaactg taaaatctct acaggagggg aggattactt 3360 agtgaccttc catgttatca ggatgcacac ttccaaagaa tcttttccac ttctcttagg 3420 tcgtccgtgg ttgaggatgg ccaatgccac catcatgtgg ggtggtgata agccctccat 3480 agtttacggt ccatatgaaa accccactaa agttagaatc aagcctttga taggactcga 3540 ggtggttgac accatatcta ttggagaagg cacaccatta aaatccgtgg atgggatgac 3600 gtttgaagct gaggttcaaa ccttgaagtg tcttggtcca aatctctacc attggtcaga 3660 caatggagag tatgccaagt ggctccagga caaccctgat tcttcatcag aattgacggc 3720 aggattgaat ttcattggaa tggagttgga cgatggtttg acacctttaa ttgaggtaga 3780 tgtccatttg attggaatag aggatgttga aggagtagag gttttagagg aaagtgagca 3840 tttgggagga tcattgaaat ttaagactgg ttcttcggga attacggttg gagaagacgt 3900 tttcagttat cccaatgtgc cttcggattg gtatcgagat aacaatgagc aatctcacgt 3960 tgctaaggaa gactggaagt ttgtgacagt ggagtttgaa ggagaagaac caagacaaat 4020 gaagatggga agccaactag aggatgaaga gatcaaggcc tactgtgagt tggtaagaga 4080 gtatcgggag gtctttgcat ggtcttacaa ggagttaaag gggattcctc ctgagattgt 4140 agaacatcga attcccttga tgaccggtgc agtgccgatc aggcaaaagg agaggagaat 4200 gaatcctcag cttcaattga ttgtgaaaga ggaactggag aaattactcc aagcaggttt 4260 tattaaacct gttgagatca cagattgggt ctctcccatg gtgcttgtaa agaagaagaa 4320 tggtaaactt agggtgtgtg tggattatag gaagttgaat ttttgcaccc aaaaagacca 4380 ctttcccttg ccatttatca ctagcatctt ggaagaagtg gcaggtcacg atttatacac 4440 atttatggat ggatattctg gatacaacca agtgtctatt gcacctgaag atcgacacaa 4500 gactgcattt acaacacctt gggggacgtt tgtgtggcat gtgatgccat ttggattatg 4560 taacgcccct gctactttcc aacgtctggt gatgtctatc ttctcagact tgttatacaa 4620 atcaatgacc gtgttcattg atgatttcag cacccaatct gatgcagatt ctcacattca 4680 tttggtgaaa gaaagcttag agaggtgcaa gaaagctcga atggccctga atccagaaaa 4740 aacctatctt gccttgacta gaggcatttt gttgggatat atggttagta agaggggtcg 4800 tgagcccgag ccagaaaagg tgaaggtaat tcagaattta tcacctccta ccagtgtgaa 4860 ggaagtgcaa cgtgtattgg gacacaccgg ttggtatagg gagttgattg aagattacgc 4920 cactattacc cttcccatca ctagccttca gaagaaaggc accaaattta tatggactca 4980 ggcttgtaat gatgctttcg aggttctaaa gaaggaattg tcttcttatc caatattgag 5040 gcccccgagg tgggacttgc ctttccacat ctattgtgat gcaagtgcgg tggcggttgg 5100 cagcattctg tgccaacttg tagaaggccc aagcaagggc aaggatcatc caattgccta 5160 cgctagtagg caattaaatc ttgcagagaa aaattattcc accactgaga gggaatgtct 5220 agccatggtg ttctcagcta agaagtttag acattatctg ttgagcaaca aagtggtttt 5280 ttatgtggat cacatggcca tcaagtattt ggttaacaaa cctgagttga gcggtcggct 5340 agctaggtgg gtcttgttgc tacaagagtt tgattacact gtggagtaca aacctggatc 5400 cgtacacaaa caagcagatc acatgtcgag attgcctgga ggaatggaga cccacccgat 5460 tgatgataga ttgatagacg agagtctttt cttggtgaca gctagaccag catggtattc 5520 taggattatt gagttcttga ctactcaaca attgccagtg gatttatcca aggacgagag 5580 gcggaagatt cgggtcaata gtcgtcattt tgtggtgtta gggaaccggt tgtatcgacg 5640 tggattggat ggagtgttaa gacgttgtgt gatggaagat gaggttcctt ccattttgtc 5700 ggcttgtcat gacagtgcgt gtggcggaca tttttctggc caattgactg gtcagaaaat 5760 tcttagggct ggttattact ggccaacact cttcaaggac gctcatacct atgtgaggcg 5820 ttgtgatgca tgtcagagat ttgctaggaa tgaccttcac atgcagttgc cgcttcacat 5880 ttccctacca ttggtgccat tcgagaagtg gggcatcgat tacgtgggag agattcatcc 5940 tcattcatct cgaggaatgg catatattgt agtggccact gaatatctca ctaagtgggc 6000 tgaagccaag gctgtgagga caaatgatgc caagaatgct gcaatctttc tctttgagaa 6060 tgtgattact agatttggag tcccgaagat ccttgtgagt gatcgaggta ctcatttcct 6120 caacgaggtg attgaatcca tgactgagcg attccagatt gatcaccgga agactacacc 6180 ctatcaccct caaaccaatg gtcagacaga gcgagtcaac caaacacttg gtactatatt 6240 gaggaaaact gttagagact ccaagcgtga ttgggatgtg aaactgccag ccgccttatg 6300 ggcatataga acaacattca aggtcaccac gcaggctacg ccattctctc tagtctatgg 6360 actggaagca gttttaccaa ttgagtttga ggttccatcc cttcggattg cagtagattc 6420 cagattgact gacagacaat ctttaaagac aaggttgtac gagctcgagg cgttggatga 6480 gagcagaaga cgaggggctc aacacattga ggccatccag aggcggcgca aggtcgtgtt 6540 tgataaacgg aacaagactc gggtcttgca acctggtatg ctagtattgt tacaagatgc 6600 tcggaagatc gactttccaa gcaagtttga tgccgtatgg ttgggtcctt atcttgtcaa 6660 ggaggtgttt ttaaacaact ccgtgcaatt ggagaccttg aatggtcaat tgtttcccac 6720 acgaacatca ggtagcaggt gtaaagaata taagacatga gggagcgcaa ttttgggcaa 6780 gagctccacc tttctatctt atgacaaggc gatagtatga actggcatgg tgaaaatact 6840 ttaaaggaca aaaattggca agtacaagct ggattcgtcc cctgatggtc gccaatta 6898 // ID Gypsy-37_PIT-LTR repbase; DNA; PLN; 232 BP. XX AC AATU01000922; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_PIT_; KW Gypsy-37_PIT-I; Gypsy-37_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-232 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000922; Positions 49555 49324. XX SQ Sequence 232 BP; 65 A; 53 C; 63 G; 51 T; 0 other; tgtagtgggt tcatgtacaa cacatggctc actcactggg tgtaggataa gattccgaag 60 ccgagctggt ggtagagtag ctaggacctc tagaggacga agcttgagag catgcttgga 120 cagagcactg tcaggttagc cagacacctc attgtgaaat cagcaccaat acaagcaagg 180 gatcctagga agccatcagc ttccctaata cgtgttctgt ggaccgacta ca 232 // ID Gypsy9-I_VC repbase; DNA; PLN; 6778 BP. XX AC scaffold_44; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy9-VC; KW Gypsy9-LTR_VC; Gypsy9-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6778 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 118-118 (2008). XX DR Genome; scaffold_44; Positions 980290 973513. XX CC Positions [5519-6001] - Integrase core CC 'CACGT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2479..4005 FT /product="Gypsy9-I_VC_1p" FT /translation="RISMGSSDPLRGKEGRNVTHGGGLSRAERTNTRAHEC FT PVINDRRLPLLFYADDLTLFATSLARLQFSLKLLIEFCAAFGMRCNVRKCE FT ALVVAASVDVVKRAFEGVRLMLPLRTDGSLWHPPMVGSLLVPSPINWCGRV FT RYLGLYWGPASPFASCVNELLEAGRRAMFGLSNRLDENRVWAPAVRLQAFD FT TQVRSVLCYGAEVWGPDRIVSVLRLGKGVLPAGKSYFDLALEDGMVQVQRD FT FCLRCAGLKQVPYKLLYRELSQLPLQYFWLRLALCFWNKIVKSRGSVYHDV FT LVDDLRLALLSDLKVDCWSSKVLIILRWLGHEWPACDSVSQKVDVYSSQLI FT RVGEVLERLSAFLLSDWDQFSQGGDPRVFQGKGVSLCRYHNWMGSPSPARE FT GSDPTGYLRVYLPVNQLRMVAKFRLCCWPLEVNKGHHRPRECRTCQVCTSG FT KVEDEYHVLMECEAYTELRNRFLINVEDTDMRKVFLNTNPRKIATFLTEVF FT DERQQRALEPHGS" FT CDS 5528..6763 FT /product="Gypsy9-I_VC_3p" FT /translation="MPWDSVSMDFVTGLPRTARQFNAILVFVDRLTEMTHF FT VPVRKSITAEKTAKLFLQNVIRLHGVPKQTVSDRGSQFAGHFWQNLARMIE FT IDPNLSTAFHPETDGQTERMNRVLVDMLRSYCATEPRSWDEALPLAEFAVN FT NALNRATNQTPFFLNYGWHPATPVVRETACNVPAAAGMAETLEKRLKEAKR FT CLMAAQDRTAAYYNADKKSATYQPGDSVLLSTKNLRMGPKVPRKLQPRWVG FT PFPVEKMIGKAAVKLTTYQPGDSVLLSTKNLRMGPKVPRKLQPRWVGPFPV FT EKMIGKAAVKLTLTPNLKIHNVFHVSLVKPYKADGPFRPIPPETLPVWQDT FT SEDGYLPVERVLDYRRHKVGKRTYVEEYLVRWQGYTDEHNSWEPADHFTPD FT MTAELESVRQRTCADAKP" XX SQ Sequence 6778 BP; 1414 A; 1985 C; 1914 G; 1465 T; 0 other; agtggtatcg agacccgagg ccccccgcgc agtccttgga gccaccccct gggatacatc 60 agcctagcgg cgcttcaggc tcgcgctccg ggcatcttgg agctgcagta cgggaccttt 120 cgcaggcctg acggtgcgcg ccttcctgca tggacgcgtt tgcacgaatt ctccgacgtt 180 tcggtcgcct gcgaatctcc agtaggtact gagagtcccc agtagggctg cgtagtaacg 240 ccaacgcagt tccccgcaaa ctagcagcta accgttccaa gggttaatcg cttccgcgcc 300 tctcgatacc cgtggtggac ttgcctgttt acccggaagt cctttgtttt ccccctcagt 360 gagcgacgag tcgcacacgg cctcgtcagg tctcacggac tcggatacca actctggtga 420 gagtgggaag cgcgtgactt gtcggccacg ctagagttac cctgatggcg caacctccac 480 cgttaggcaa cgcaccgccg ggttggcaaa acatgctgat gcagtacgca gcgggcgcgc 540 ctcctgcccc aggcctcaat gcgccccttg ctatgcctct cgctggtgcg ggataccttc 600 ctccagctcc gcctctcttt gtaggagctc aaccacccgc cggtggcgca gctaatgctg 660 ctggggctgc tgcccctatg ctcggggcag gagccccacc cgcagctgcc gctgccccgg 720 ccggggctgg cgttgcggcc gcagcaccac cgccggcacc agcagccgca gctgccccgg 780 caggggctgg gggcgctgct ccgccccagc caccagcggc cgcagccggt cccatgatgc 840 tgccggcggc agctggccct gcactggctg ctgtcgcagc cgcaccaccc atggacccgg 900 cgcaacagca ggcaaacatg ctcgcgttcc tgcagttctg cgcggccgtc gtagcccagc 960 agcaggccgc aggcgcacct gcggcagcgg gtcaacccgc ggcgcagcct gcgggcgcgc 1020 cgccgggggg gcaacccgcc cccgctccgc cgatcgcacc gcctgcagta cccgccgtcg 1080 cggcacccgg cccagtaccc gccgtcgcgg cacccggccc agtacccgcc gtcgcggcac 1140 ccggcccagt acccgccgtc gcggcacccg gcccagtacc cgccgtcgcg gcacccggcc 1200 cagtacccgc cgtcgcggca cccggcccag tacccgccgt cgcggcaccc ggcccagtac 1260 ccgccgtcgc ggcacccggc ccagtacccg ccgtcgcggc acccggccca gtacccgccg 1320 tcgcggcacc cggcccagta cccgccgtcg cggcacccgg cccagtaccc gccgtcgcgg 1380 cacccggccc agtacccgcc gtcgcggcac ccggcccagt acccgccgtc gcggcacccg 1440 gcccagtacc cgccgtcgcg gcacccggcc cagtacccgc cgtcgcggca cccggcccag 1500 tacccgccgt cgcggcaccc ggcccagtac ccgccgtcgc ggcacccggc ccagtaccca 1560 tggcggtgga cgccattccc ggtggagcgg ctggagcacc cgtcgaccca gcggtcagtg 1620 gtttccgacc aatgataccg gtaccaaaac tacacgttgc tgtaggaaag ccagttgacg 1680 cggaacgtgt tcatgcgttt attgctgacg cacgcattta cttcgcagtc gctggctggg 1740 tgaacaatcc gaacttgcaa aagctgttcc ttagcggagc tttggaagcg gaagctaaga 1800 catggcatgt cgtctggaca cgtgcgaacc ccaactacac agtagagggg ttgttcttgg 1860 cattgcttgc tcgctttgcc ccggaggtac agtcccgtgc ggacctagcg caacagcaat 1920 tgtccagcgg gcaattcaag caaggcccca acgaggcggt agctacgttt gcgagccgat 1980 accagtcctt ggttcaggac ctgcccgata tgcccgaaag cacaaaatgt ttccacttcc 2040 gcatggcatt gttacccgcg ttgcgcaagg cagttgcttg caacccggta acctttgagc 2100 cgcatacgac ttatgctcag ctccttgctc atgcacttgg cgcggagcgc cagcagctgc 2160 tcgagaacgc atccgggcgg aatgccgtaa agtctaacgc agctatcccc gttcctgcca 2220 accaggagcc agaggctcca cccatgaact acgccgccgc ggttggacgc ggtcggggcg 2280 ggtacgctcc gaacgctggc catggcgcag gcggcgccgg ccgcggtgcg ggtccaagcg 2340 ggcggggctc cgggcccccg ccgaaccgag gcggacgtgg tcacaacccc gccggccgcg 2400 gaggtggacg caccggatgg cagcccctct ttctcgtcaa gtaactgacc tgatgcaaaa 2460 ggggatgatt cgccctagcg tatctccatg ggcagctccg atcctcttcg tgggaaagaa 2520 ggacggaacg ttacgcatgg tggtggatta tcgagggctg aacgcacaaa cacacgtgca 2580 cacgaatgtc ctgtcattaa tgatcgtcgg ttgcctctgt tgttctatgc agacgacctt 2640 actttgttcg cgacctcgtt ggcacgcctc cagttctcgc ttaagctgct tattgagttc 2700 tgtgctgctt ttggtatgcg ctgcaacgtt cggaaatgtg aggcccttgt tgtggctgct 2760 tccgttgatg tcgttaagag ggcgtttgag ggggtgaggc tcatgcttcc tctccgtact 2820 gatgggtcgc tttggcaccc acccatggtt ggtagtttac ttgttcctag tcctattaac 2880 tggtgtggtc gcgttaggta cttgggtctc tattggggcc ctgcgtcccc gtttgcgagt 2940 tgtgtcaacg aacttttgga agcagggcga cgggctatgt tcggccttag taatcggttg 3000 gatgagaaca gggtgtgggc tcctgccgtt cggcttcaag cgttcgacac ccaggtccgt 3060 tcggttctct gttatggtgc tgaggtctgg ggtcctgata ggattgtctc cgtcctgcgg 3120 ttaggtaaag gtgttttacc cgctggtaag tcatattttg atttggcttt ggaagatggt 3180 atggtccagg tccagcgtga cttctgttta cgttgtgctg ggctcaagca ggtaccttac 3240 aagctgttgt acagggagct gtctcagttg cctttgcagt acttttggtt acgccttgcg 3300 ttgtgtttct ggaataagat agtcaagtcc cgtgggtcgg tctatcacga cgtgttagta 3360 gatgatctcc gtctggctct tctgtctgat ctcaaagtgg attgctggtc gtctaaagtg 3420 ctcatcattt tgcgttggtt gggccatgag tggccggcgt gtgactccgt ttctcagaag 3480 gtagatgtat actcgtctca gttgattcga gtgggtgagg ttctggagag gttatctgcg 3540 ttccttttaa gtgactggga tcagttcagc caagggggtg atccgcgtgt gttccaaggt 3600 aaaggggttt cgctttgcag gtatcataac tggatgggct ccccttcacc agcaagagag 3660 ggctccgatc ccacaggcta tttgcgtgtt tatttgccgg tcaaccagtt gcgtatggtt 3720 gccaaattcc gtctttgttg ttggcctttg gaggtcaaca aaggacacca taggccgaga 3780 gagtgccgta cgtgtcaggt ctgtacgtcg ggtaaggttg aggatgaata tcatgtgctc 3840 atggagtgtg aggcgtatac tgagttgcgt aataggtttc tgattaacgt tgaagatact 3900 gatatgcgca aggtatttct taataccaat ccgaggaaaa tcgctacttt ccttactgag 3960 gtttttgatg agcgtcaaca gcgtgctctg gagcctcacg gctcgtgagg gcacccgccg 4020 cgtcggcggc ggaaatactg taaccacaat gacaatgaca aacggttaaa aaccggtatc 4080 cgttgccgcg gatagatgat ttggtggata gtctgggagg tagtgtgatc tactcctcca 4140 ttgacttaca acagggatac catcaaatta agattcgagc agaggatgta ccgctgacag 4200 cgtttcgtac tcccctggga cactatgaat atgttgtcct accttttggg ctgactaatg 4260 cccctgccac gttccaagtg gtgatgaacc gaatctttca gccctacctc ggcaagtttg 4320 tcgtggttta cctggatgat atcctggtgt attcccgaag tcgtgaagaa catctaaaac 4380 accttgaaac cgtgttcgaa gtgctacgac gggaacggtt tcatgcaaag tcgtccaaat 4440 gccactgggc gcaaactcag cttgagtacc tcggtcacat tgttagtgcc gaagaagttc 4500 gcatggaccc taagaaggtg aaggttgtcc gtgaatggcc actgccacag aacgtgtccg 4560 agttacggca gttcttgggc cttacgaact atttccggaa gttcgttaaa gcgtatgctt 4620 cgctttcggc tcctctcacg gatatgttac gtggaaacag tcaagtccgt cctgaagatt 4680 ggacaccagt acgggtacac gcctttgaaa tggtgaaaaa tgcgttagca gagatgtact 4740 gctacgatac ccaaacatga ctaagccttt tacgttcgaa ttgatctcgg acgcgtcctt 4800 acgcggtacg ggtgcagtcc tactgcagga cggaaaacct atcgccttca ccagtaaaaa 4860 gttcacccct gcggagcgga actataccac gggtgagcag gaactacttg gtgtaataca 4920 cgcacttcaa gagtggcgct gctacctgga aggtccacat gatgtgagag tcgtgaccga 4980 tcatcacccc ctgatctatc taaagacgca accgacgctg aatcgtcgtc aagctcgatg 5040 gcttgagttc ctttcccgtt ttcaccttga ttgggaacac cgaagcggta aaaccaacgt 5100 tgctgacgca ctgagccgac atccgctgct gaatgcagtg acacgcatgc aaacgcggca 5160 aaccctgagg gctcgcatcc tgaccggata cgagaaggac ccgtggttcc aaaaccctga 5220 gaaccttgcg aacctggaaa gaacgcaaga gggcttttag ctcaaaactc ttcctgatgg 5280 caagaaacgt gttgcggtgc ccaatcacgg cgatctccgc aaggaattca taaaccgttg 5340 ccatggtgac cccttggccg gacacccggg agttcaccgc acgttggaac ttgtacaacg 5400 tactcattgg tggcccaatt gtgccgcaga tgtgcgacaa gttgtcctta cctgcgacaa 5460 gtgccaacgt aacaaaagcc gtacaggcaa gaagcctggc ttgttacaac ccttaccaat 5520 ccccgaaatg ccgtgggaca gcgtctccat ggatttcgta accggcttgc cccgtacggc 5580 tcgccagttc aacgcgatct tggtcttcgt cgaccgtttg acggaaatga cgcactttgt 5640 cccagtacgg aaaagtatca ccgccgaaaa gaccgctaaa ctcttccttc aaaacgtgat 5700 ccggttgcac ggcgtgccga aacaaacggt ctcggaccgt ggatctcaat ttgccggtca 5760 cttctggcaa aacctggcac ggatgattga aatcgatcct aatctctcca cagctttcca 5820 ccctgagacg gatggacaaa cggaacggat gaaccgagtc ctggtagaca tgcttcgcag 5880 ttattgcgct acagaaccac gatcgtggga tgaagcattg cccttggctg aatttgccgt 5940 gaacaacgct ttaaaccgag cgacgaacca aacaccgttc ttccttaatt acgggtggca 6000 cccggcaaca ccggtggtga gggaaacagc ctgtaacgta ccggccgccg caggtatggc 6060 tgaaaccctg gaaaaacgac tgaaggaagc aaagagatgc ctgatggcag cccaagatcg 6120 gaccgcggcg tactacaatg cagataagaa atcggcaacg taccagcccg gtgactcagt 6180 actcttaagt acgaaaaact tacgaatggg cccgaaggta ccccgtaagt tacaacctcg 6240 atgggttggt ccctttccag tggaaaagat gattggtaaa gctgcggtga agttaactac 6300 gtaccagccc ggtgactcag tactcttaag tacgaaaaac ttacgaatgg gcccgaaggt 6360 accccgtaag ttacaacctc gatgggttgg tccctttcca gtggaaaaga tgattggtaa 6420 agctgcggtg aagttaactc tcacgcccaa tctgaagata cacaatgtgt ttcacgtaag 6480 cctcgtgaaa ccgtacaagg ctgatggccc ttttcgtccc ataccacccg aaacattgcc 6540 tgtttggcag gatacctctg aagatggtta tctgccggtt gagagggtgc tcgattaccg 6600 acgacacaaa gtcggaaaac ggacgtacgt ggaggaatac ctcgtacggt ggcaaggata 6660 taccgacgag cacaacagct gggaaccagc ggatcatttc actcccgata tgacagcaga 6720 gctggagtca gtacgacaac ggacttgcgc ggacgccaag ccctaaaggg ggaggcaa 6778 // ID Copia-35_PIT-I repbase; DNA; PLN; 5295 BP. XX AC AATU01000867; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-35_PIT_; KW Copia-35_PIT-LTR; Copia-35_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5295 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000867; Positions 65703 60409. XX CC Positions [1780-2082] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 3714..5267 FT /product="Copia-35_PIT-I_3p" FT /translation="MRSPQSREWLEGMEREVNAMFKKDVFELIDESEMPDE FT AHLLSTMWRFKAKTDDEGYVTRWRPRLVGRGDFQQFGVDFEWTFSPVARMV FT TFRVVVAIAAKLGLDLYQGDIDTAYLNAVLKIKQYVRGIPGFPCPKGQVYR FT VNHALYGLHQSGAEWFEEIDRWLKSMGFVSTQTEPCLYVYCKDGVFAMIPL FT YVDDVVLATNSVEFKKSLLAAFDEKYGFKDGGKLHSFLGVQVEQSDNCIRI FT HQEKYCNEILERFGFDGAHGSATPMETTAKYSQSTSAQDEEPSFDYRGAIG FT ALMYLATSTRPDIAYSVGYLSRFVANPTQKHCGAVKRILRYLVSTKNLGIV FT YSLGDTGVDSVVISAHSDSDWGNDPDSRKSITGFVMTIAGGAVAWAARRQT FT IVAQSTAEAEYVAACEAAMEGRGIVNMLDEVLPVINVSTSLELGMDNNTAI FT ALATAPAYNSRTRHIELRWHYVRDQVMKGLMEIHKVAGLENPTDMFTKPLP FT KRSLAKYREKIGMAAELQSTHD" FT CDS join(466..2082,2086..3741) FT /product="Copia-35_PIT-I_1p" FT /translation="MFLIKEQLAAINADVRDPIFINLLVRSLPANPRFDRL FT RGMVEIGTSEVDTPEKLKDQILRMDSYNKCDKELGATGGNGAHNQGQGQGQ FT RARHNQKQSSGISTKTELPEKAAAIATKKLDQQQSNCFRCHRPGHQQKDCP FT KKSLTSTNAPKVKQATYTKRLEKSENPKQSVAPVVPEQTSQVLAPDTSVVH FT VPVTTATPDIATPTDHGWHDNSPRGSDQRDHCAEEYANWEWCLDNAANVHV FT ASDQRYFTEYKPFSDQEADRVRGFQTKFAAVPLGHGTVKIKVKNSGPVVIL FT TLRDVFFVPDSKKLLSHLQAEDQGYDIEYHGRKGKKVYELRERDKKLLEVG FT RDPFGLYTFSARNSFLPKNTRENPKVEEQTSLHQTPPRVTITAADGAADLQ FT RWHERLGHLCPQFVKMMVDHDLVTGMLLRQRSFADCEACHLGKQRKPSPKQ FT TLEREIRRKNQVVFADLLFPHQSSSAKLPKAVLVIVDGYSRYTTVYPLKSK FT TAYEVNTAMRRYIAWSERQFSKCKLLKVVTDSGKEFVNEEMNQYQQQGIAF FT LPNPPHGSHLNLTERANQTLTHMMKTMLTMAGLPKPQFWMYALKMATFIRN FT RSYCQAIKDTPYRLMMDKKPDLHRLKRFGAVAYVHWAKDPSRRKLDNNCRI FT GFVVSYLEGQPGYEVYFSTEKVVQHVLHASVNEEILYKDRYQEGYPNNVKS FT WLSSVDEEQRRGDAPGITYRSAIDEQDVAAEKDNNSPPDSPNLPDDEKIEE FT LSPAAHTHYDTIESPESDLSGTKEWMSMPMHTDFLKSRADQEVSRASEDET FT MSQPDVSSQIPEKSQDLTEVTAQDAGQQAEVHVNGDNAPEEKTEESEDLSG FT SGEPMIDDPANSDDEAMEVEPSPSSELESQMCEEPHDTDELFEHDGDPGQV FT SSEECENHKGECSSPAESDWTLHSPWDRLDIVDTYDCEHLERYEAQYATDP FT TEEDAGDVFALRRESTGLQEEVDNQIIAVDAGNGIDTVMEPEVLTGNLRSS FT LEAELEDVQEHKRLKNAGGQPQRMILRSESERHAPYRTISMQAFAEENQSK FT NQILDLKKIDGTSRMLRYLEAFQRLCARLKVVSG" XX SQ Sequence 5295 BP; 1477 A; 1188 C; 1464 G; 1166 T; 0 other; gggttatgag cccaagctgt cagtaaggac agttgtgagc actctgaaga tccaagatgt 60 caaacatggt tgaacgcaac aagaacggac gccctatcgg ttggcatggc caatgctggg 120 tgtactacaa gcaaatgatg gagatcgcgt tcgaggacaa gaacgttctc gagtacgcga 180 gtggaaccaa gactttggcc tccaacgcga cggacgaaga gaagtcgaag ttcaaggagg 240 gccaagtcaa ggtgaagcag atcattatgt cctcgctgtc gatggaactc ggacagcagg 300 tcatgatgaa gaagaccggt acagaaatgt ggaagtactt gatggatacg tacgagggtg 360 cggcgaacgc ggcgacccgt acgaaccaag ataatcattc tgtacaacaa gcttcaagct 420 gctaaatgta agccgacctg ggatgttcgt ctacatgtta acaatatgtt cctgataaag 480 gagcagcttg ctgctatcaa tgctgatgta agagatccga ttttcataaa cttgttggtt 540 cggtctttac cggcaaaccc acgatttgat cgcctgagag gaatggtcga aatcggaacc 600 agtgaggtgg atactcctga gaaactcaag gaccagatcc tgcgaatgga cagttacaac 660 aagtgtgata aagaacttgg agctactggt ggcaatggtg cgcacaacca agggcaagga 720 caaggtcaac gagcaagaca taatcaaaag cagagttctg gcatcagtac gaagactgag 780 ttaccagaaa aggcggctgc tatcgcgacc aagaagttgg atcagcagca gagcaactgc 840 ttcagatgcc atcgaccagg tcatcagcag aaggattgcc cgaagaagtc gctgacgtct 900 acaaatgcgc cgaaggtcaa acaagccacg tacactaagc gtctcgagaa aagcgagaac 960 cccaagcagt cggtggctcc tgtagtgcct gagcaaactt cgcaagtttt ggctccggac 1020 acttctgtgg tgcatgttcc tgtgacgaca gctacaccag acatagcgac ccccactgac 1080 cacggatggc atgataatag tcctagaggt agtgatcagc gtgatcactg tgctgaggaa 1140 tatgctaatt gggagtggtg cctggacaac gcagcaaatg tccatgtagc atcggaccag 1200 cgctacttta cggaatacaa gccattctcg gaccaagaag cagacagagt acgcggattc 1260 cagacgaagt tcgcggctgt tccgcttggc catggaacgg tgaagattaa ggtgaaaaac 1320 agtggacctg ttgtgatcct tactcttcga gatgtattct tcgttccgga tagcaagaag 1380 ctgctgtcac acttgcaggc tgaggaccaa ggttatgata ttgagtatca tggacgaaag 1440 ggcaagaaag tgtacgagct ccgggagaga gataaaaagc ttctagaagt gggacgtgac 1500 ccatttggac tgtacacatt ttctgctcgg aactcatttc ttccgaaaaa caccagggag 1560 aacccgaagg tcgaggagca gacctccttg caccagactc cgccccgtgt taccatcacg 1620 gctgcagatg gcgcagctga tctgcagaga tggcacgaac gactgggcca tctgtgcccg 1680 cagtttgtca agatgatggt cgaccatgat cttgttactg gtatgttgct gcgacagcgt 1740 agcttcgcgg actgcgaagc atgtcacttg gggaagcaga gaaaaccttc gcccaagcaa 1800 acgctggagc gtgagatcag gcggaagaac caagttgtct ttgcagacct gttatttcct 1860 caccagagct caagtgccaa acttcccaag gctgtattag ttatagtcga tggctattca 1920 cgctatacga cggtctatcc gctaaagtcg aagactgcct atgaggtgaa cacggccatg 1980 cgacgctata tcgcttggtc tgagcgccag ttcagcaaat gcaagttgct gaaagtggtc 2040 acggacagtg gcaaggagtt cgtcaacgag gagatgaatc agtgatacca acaacagggg 2100 atagcgtttc tgccaaaccc tccccatggt tcgcatctga atcttaccga acgagcaaat 2160 cagacgttga cacacatgat gaagacaatg ctcaccatgg caggcttgcc gaagcctcag 2220 ttttggatgt atgccttgaa aatggctaca tttattcgca atcggtcgta ctgtcaagct 2280 atcaaggata cgccgtatcg cttgatgatg gacaagaaac ctgatctaca tcgcttgaaa 2340 agattcggag cagtagccta cgtgcactgg gccaaggacc cgtcgcgtcg aaagctagat 2400 aacaactgcc gtattggctt tgtggtcagt tacctggagg gccaaccagg gtatgaggtc 2460 tatttttcaa cggagaaggt ggtacagcac gtcttgcatg cgtctgtcaa cgaggaaatt 2520 ctctacaagg accggtatca ggaaggctac cccaacaacg tcaagagctg gttgtcatcg 2580 gtagatgaag aacaacggag aggagacgca cctggtatta cgtacaggag cgccattgac 2640 gaacaggatg ttgctgccga gaaggacaac aattcgccac ctgattcgcc aaatttgcca 2700 gatgatgaga agatcgagga attatcgcct gctgcgcaca ctcactatga cactattgag 2760 tcaccggaga gtgaccttag tgggactaag gagtggatga gtatgccgat gcatactgat 2820 ttcctgaaat cgagggcaga tcaagaagta agtcgtgcta gtgaagacga aacgatgtca 2880 cagcccgacg tctcttctca aataccggaa aagtctcaag atctaacgga agtaacagct 2940 caagacgctg gtcaacaagc tgaagttcat gtgaatggag ataatgcccc ggaggagaag 3000 actgaagaga gcgaagatct tagcggatca ggcgagccta tgatcgatga tcctgctaat 3060 agtgatgatg aagccatgga ggtggaaccc tcgccgtcat ctgagctaga gagccaaatg 3120 tgcgaagagc ctcatgatac tgatgaactc ttcgagcatg atggtgatcc aggtcaagtt 3180 tccagtgaag aatgcgagaa tcacaaggga gaatgtagtt cacctgctga aagtgattgg 3240 acgctgcatt cgccgtggga tagactggat atagtggata cctacgactg cgagcatctt 3300 gagcgctatg aagctcagta tgcaacagac cctactgaag aggatgcggg agatgtattc 3360 gcactgcggc gtgaatccac gggacttcaa gaagaagtgg ataaccagat cattgcagtt 3420 gatgccggca acggaataga cactgtgatg gagccggaag tactcactgg taatctacgt 3480 tcttcgctgg aagctgaact cgaagatgtg caagagcaca agcgactgaa aaacgccgga 3540 ggacagcccc agcgaatgat ccttcgatcg gaatctgagc gtcatgcgcc ttaccgtacc 3600 atctctatgc aagcttttgc agaagagaat cagtcaaaga atcagatttt ggacctgaag 3660 aagatcgatg gcacatcaag gatgttaaga tacctcgaag ctttccagag gctatgcgct 3720 cgcctcaaag tcgtgagtgg ctagagggaa tggagcgtga ggtcaatgca atgttcaaga 3780 aggatgtttt tgagctgatt gacgagagtg agatgccgga cgaggcgcat ctactgagta 3840 ccatgtggcg attcaaagcc aaaacggatg atgaaggata tgttacacgg tggcgacctc 3900 gcttggtcgg acgtggtgac tttcaacaat tcggagttga ttttgagtgg accttctcac 3960 cagtggctcg gatggtaact ttccgtgtag ttgtggctat tgcagcaaaa ctagggctcg 4020 acttatacca aggggatatc gatacggcat acttgaacgc tgttttgaag ataaagcagt 4080 acgttcgtgg gattcctggc ttcccttgcc cgaaaggtca agtgtatcga gtaaaccatg 4140 ccctatacgg tcttcaccag tctggagcag aatggttcga ggaaatcgac cgctggctga 4200 aatcgatggg attcgtgagt acacagacgg agccgtgtct atacgtatac tgcaaggacg 4260 gtgtgttcgc aatgattccg ttgtacgtcg acgacgtagt actcgctaca aactctgtgg 4320 agttcaagaa atcactgctc gcagcatttg acgaaaaata tggcttcaaa gatggaggta 4380 aactgcattc gtttctggga gtgcaagttg aacaaagtga caactgcatc cgcattcacc 4440 aagaaaagta ctgcaacgag atcctggagc gattcggatt tgatggtgca cacggcagtg 4500 cgaccccgat ggaaacaaca gcaaagtata gtcaaagcac aagtgctcaa gatgaagagc 4560 cgtctttcga ttatcgtggt gctattggag cgctgatgta cctagccaca agcactcggc 4620 cagatattgc ctactcggta ggatatctta gtcgattcgt tgccaacccg acgcagaagc 4680 actgtggcgc agtcaagcgt atcttacgct acctggtgtc aacaaagaac ctgggtattg 4740 tgtactctct gggtgacact ggtgttgact cggttgtgat aagcgcccac agcgactcag 4800 actgggggaa tgatcctgat tcccggaaga gtatcacagg gtttgtgatg acgattgccg 4860 gtggtgcagt ggcttgggca gctcgaagac agacaatcgt cgcgcagtct acagcagaag 4920 ctgagtatgt cgctgcttgt gaagctgcga tggaaggtcg tggaatcgtc aatatgctgg 4980 acgaggtgct tcctgttatc aacgttagca ccagtttgga gttaggcatg gacaacaaca 5040 cagccattgc gttggctaca gctccagcgt ataatagtcg tacccgccac attgaacttc 5100 gttggcatta tgtacgcgac caagtaatga agggtttgat ggagatccac aaggtcgcag 5160 gcttggagaa cccgactgac atgttcacca agccattgcc caagcgaagt ctggcgaagt 5220 atcgtgagaa aatcggaatg gctgccgagc tgcagtcaac tcacgattga tgttccgaca 5280 agtcggaggg ggccg 5295 // ID LTRTF2 repbase; DNA; PLN; 349 BP. XX AC L10324; XX DT 07-FEB-1997 (Rel. 2.01, Created) DT 07-FEB-1997 (Rel. 2.01, Last updated, Version 1) XX DE TF2 retrotransposon, LTR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; LTRTF2; KW Long terminal repeat; retrotransposon. XX OS Schizosaccharomyces pombe OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; OC Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-349 RA Weaver C.D., Shpakovski V.G., Caputo E., Levin L.H. RA and Boeke D.J.; RT "Sequence analysis of closely related retrotransposon families RT from fission yeast."; RL Gene 131(1), 135-139 (1993). XX RN [2] RP 1-349 RA Boeke D.J.; RT "LTRTF2."; RL Direct Submission to Genbank (04-FEB-1993)Jef D. Boeke, Mol. RL Biol. Genetics, Johns Hopkins University, Baltimore, MD 21205. XX DR GenBank; L10324; Positions 1 349. XX CC LTR of TF2 retrotransposon. XX SQ Sequence 349 BP; 121 A; 68 C; 48 G; 112 T; 0 other; tgtcagcaat actacactac gctataatac actacgttga gtatcactat atgtcacatg 60 ttctaattat atatcgtacc atgtatgata cgatatggag attgatctta atgataatct 120 attaagatca atattatctg aatactataa atagagctac tgctgaacct cgttcctcag 180 ttcagttatg agctatatta gtgataggta acattataac ccagttaata caatacctat 240 actcagttgc tacttataca acctgtgtat cgtaatataa tagatcacaa ggaaaactca 300 ccgcagttct acgtatcctt aaatcagata ccaaactgcg tagcttaca 349 // ID Copia-11_PIT-I repbase; DNA; PLN; 4488 BP. XX AC AATU01000106; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PIT_; KW Copia-11_PIT-LTR; Copia-11_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4488 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000106; Positions 21605 17118. XX CC Positions [1873-2382] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 778..4464 FT /product="Copia-11_PIT-I_1p" FT /translation="MQRLLHTFATKITPAQSMKMFTAQKNAKRSWTEHYLY FT LVAVSEACGGTDNLVLDNIVHYADPAMRVSMLSRLNLGRTDYLRQAEELAH FT FAQSTEIELRGKHLGRDVVSDVREARMDNRKCFKCGKVGHLKASCPDGLKD FT GSLRGDADFVLAMGSTTSDKGVWILDTGSGRHLVNDESLLEYAEDFDSECV FT AANGGALKITKRGSVMLETTAMGKQTKVLLLDVEYAKNLERNIISYGRLEK FT KGYRMEYRGPNRVIAAKSGGPAVFDVERCDNVLVVRTEGHRGRQSARSVLM FT AVLAESQDEKGPDVQTGTLMHFHRRLGHLNYDTILRMARDPASGISLTDEK FT RANCLACAQDKQTKNKQSRKDSGANSPTDVIGGVICSDLKGPMTPFDRLGN FT RYMINFIDHRTNYCRIFLAKNKDVAAQKFKHFMVFFERQFNCRIHVLRTDG FT GGEYKTLDLFCKDTGIARQVSEPRNQASNGKAERLHRTVMNMVRSMVFACG FT LPLSFWGDAAEYAAYILNRSPSKGNPGLKSPLQMLTKSTPDLGDIVVFGSP FT CTVHQDAKNKSLGERGKPGMIIGKSVEMKGYRVYIPKDRVVVVTQHVRNVE FT TFTDVQNEQLRRVHLEDSDESKTEDAAPETQGPVAAPKPKSKRRAKSRWTR FT EKHQTRLASRKAAAAAEEKSNGDGQPDSNAAAGLDVVNSVREPDPKNYAHA FT MKSKLRNKWTIAMVEELRALEENGVWTVVIPPTGSHVLHTKWVFKTKTDAD FT GAIERFKARLVACGNEQLFGVDYGLTFAAVMELSTVKVILVFARRWGVPAR FT HKDIPNAYVKAEKEQHLEIYLAIPKEMEIPEEVLRSFNVRDSTKLALQLKK FT SLYGLKQAGRLWSKLLHANLEKLGLTRCVADMCLYYRRQGSKMTIVGVYVD FT DLLVTASVSSLVEEFFSEMSTLSIKDLGEVRKFLGMRVELDQQGDYNLDQQ FT AAIEELLEQHGLAKANGVRAPIGEESNEVGSKQLELLPKVAAHGQPTIRGF FT QSLVGSLLWVARCTRPDISFAVHKATRRTHHSSTIDWMLAKRIARYLKDTK FT HLKLGMRVDVTRDQRIRIESWSDSDFAADKSDRKSVTGGVITMDGAIVQWI FT CKKQTVVSLSTMEAEFTSASHVGRELLGLRELVRELKFEAVQPMAMYMDNQ FT AAIRQLESEDSTASAKHVDIRIKFVCDFARKGIVKPEYVESRLMMADLLTK FT ALPAPRMAELREIFNLKKA" XX SQ Sequence 4488 BP; 1145 A; 1127 C; 1440 G; 776 T; 0 other; acagtttaca ccgtagccag gagcgaagct ccaggaactc cggaagccaa ggaggtcgcc 60 caagagaggg acgacggcta gtacggagac gttgatgaag tcaaaaagct gcccaagccc 120 aaggacccgc aggagaagat gctggacctg ctcacggact tggcggggcg catggagcgc 180 ctggaagcct cgcagaagcg acaagaggac aaagagcggt tgtcggaccg tgagtcaagt 240 gtcttcggct ctgccatcgg actcggacga gcgatgggtt gccaggcgtt ggaccagacg 300 ccgccaccac ggaaccagcc agtatccccg gccacgtact tcggcgtgaa gcagcgtgtg 360 tacgggtacg agaacgcagc cgcgaacgta gagatggcgc aggcaccgca gccagcacta 420 cctcagcact acgtgccacc tcggcagcca cagctacctg tgcaaccgcc agtcatgcag 480 caaggaatga atgcgccggt gaccaacttt cctcgagtgc ctgacacgcg tcagcgtaag 540 ctaggaattt ggcatttcga cggcaaagag ctctatcaag gtctcggtag cggtttcttg 600 tcgtggggca agaggtttgc tcggcagata cagttcgcgg agcgcgcgag cggcttccag 660 tggacagagg aggtgaaggt ggacattctg ggacaccacc tcaccggcat ggccgaacgc 720 taatataacc agcaggttaa aggatggtgg ggcgaggaac cgacgttaga gcacgcgatg 780 cagcgattgt tgcacacctt tgcgacgaag ataacgccgg cacagagcat gaagatgttc 840 acggcgcaga agaacgcaaa gcgtagctgg acggaacact acctttactt ggtggccgtc 900 agcgaggcgt gtggaggtac cgacaatttg gtactcgaca acatcgttca ctacgcggat 960 cctgcgatga gagtgtcaat gttatccagg ttaaaccttg gacgcacgga ctaccttcgg 1020 caagcggaag agctggctca cttcgcgcag tcgactgaga tagagctacg tggcaaacac 1080 ctggggcgcg acgtcgtgag cgacgtacgc gaagcccgca tggacaacag gaagtgtttc 1140 aagtgcggca aggtgggcca cctaaaggca tcgtgcccag acggactcaa ggatggcagc 1200 ctacgagggg acgccgattt cgtcttggca atgggcagta cgaccagcga caagggcgtg 1260 tggattctcg acactgggtc gggacgacat ctggtaaacg atgagagcct gctggagtac 1320 gccgaggatt ttgacagcga gtgcgttgcc gctaatggag gagcactgaa aataaccaag 1380 cgtggcagcg tgatgctgga aaccacggcg atggggaaac agaccaaggt gctattgtta 1440 gatgtggagt acgcgaagaa cttggagagg aacattatct cgtatgggcg gttggaaaag 1500 aagggctaca ggatggagta tcggggccca aaccgcgtga tagctgccaa gagcggcgga 1560 ccagcggtgt tcgatgtgga aagatgcgac aacgtgctag tcgtccgcac cgaaggccac 1620 agaggccggc agagtgcgag gagcgtgctc atggctgtgc tggcagagag ccaagacgag 1680 aagggaccag acgtacagac tggtacgctg atgcactttc accgcagact agggcacctc 1740 aactacgaca cgatcctgcg catggcgagg gacccggcgt cggggatctc actgacggac 1800 gagaagcgcg caaactgctt ggcctgtgcg caagataaac agacgaagaa caaacagtca 1860 cgcaaggact cgggggccaa ctcgcccacc gacgtcatcg gtggcgtaat ttgctccgac 1920 ctaaagggcc cgatgacgcc atttgaccgg ctcggaaaca ggtatatgat caactttatt 1980 gaccatcgca cgaactattg caggattttc ctagccaaga acaaggacgt agcggcacaa 2040 aagtttaaac acttcatggt cttcttcgag aggcagttca actgtcgcat tcacgtgctg 2100 cgcaccgacg gcggaggaga gtacaagact ttggacttgt tctgcaagga cactggcatt 2160 gctagacaag ttagcgagcc ccgcaaccag gccagcaacg gcaaggcgga gcgcttgcac 2220 cgtaccgtaa tgaacatggt acgtagcatg gtgtttgcgt gcggattacc tttgagtttc 2280 tggggggacg ccgcggagta cgccgcgtat atcttgaatc ggagtccaag caaaggaaac 2340 ccaggtttga agtcgccact gcagatgctc actaagagca cgccggacct tggcgacatt 2400 gtggtgtttg gctccccgtg caccgtgcac caggacgcca agaacaagtc gttgggtgag 2460 cgcgggaagc ccggtatgat catcggcaag agcgtcgaga tgaaggggta cagggtctat 2520 atcccgaagg acagagtggt ggtcgtcacc cagcatgtca ggaacgtgga gaccttcacg 2580 gacgtgcaga acgagcagct gagacgcgtg catctggagg attcggacga gtccaagacg 2640 gaagatgccg cacctgagac gcaaggaccc gtagcggcgc cgaagccaaa gtcgaagcgt 2700 cgtgcgaaga gtcggtggac tcgagagaag caccagacta gattagcgtc tcgaaaggca 2760 gcagcggctg cggaagagaa gagcaatgga gacggtcagc ctgacagcaa cgcggccgcg 2820 ggcctcgatg tggtaaatag cgtgcgagaa ccggatccga agaattacgc gcatgcgatg 2880 aagagcaagc tcaggaacaa gtggaccatc gcgatggttg aggagcttag agcgctcgaa 2940 gagaacgggg tgtggacagt ggtgataccg cctacgggca gccatgtgtt gcacacaaaa 3000 tgggtcttta agaccaagac agatgccgat ggagccatcg agcggttcaa agctcggcta 3060 gtggcctgcg gaaacgagca gttgttcggt gtcgactacg ggctcacgtt tgccgcagtg 3120 atggaattga gcactgtcaa ggtgatattg gtgtttgcac ggcgctgggg cgtgcctgcg 3180 aggcacaagg atatccccaa cgcgtacgtg aaggccgaga aggagcagca cctggagatt 3240 tacctggcca tcccgaagga aatggagatt ccggaggaag tactgcggtc attcaacgtg 3300 agagacagca ccaagctggc actacaactg aagaagtcac tgtatggctt gaagcaagcc 3360 ggacggctgt ggagtaagtt gctccacgcc aatctcgaga agctcgggct tacgcgctgc 3420 gtcgcggaca tgtgcttgta ttacaggagg cagggcagta agatgacgat cgtgggcgta 3480 tacgtggacg accttctggt caccgcgtcc gtctccagct tagtcgagga gttcttctcg 3540 gaaatgagta ctctgtccat caaagatttg ggggaggtga ggaaatttct cggcatgcgt 3600 gtggagttgg atcaacaggg agactacaat cttgaccagc aggcagccat cgaggagctt 3660 ctggaacaac acggactcgc aaaggcgaac ggagtcaggg cgccaatcgg ggaagaaagt 3720 aacgaggtgg ggtccaagca actggagctg ctaccgaagg tagccgccca cggacaaccg 3780 acgatccgag gattccagtc gctcgtaggt agcctgctct gggtcgcgcg gtgtacaaga 3840 ccagacatta gcttcgccgt tcacaaggcg acgcgacgca cgcaccactc gtcaacgatc 3900 gactggatgc ttgcaaagag gatcgcacgc tatctgaagg acacgaagca tctcaagttg 3960 ggaatgcgcg tcgacgtgac cagagaccag aggatcagga tcgagagctg gagcgactca 4020 gacttcgctg cggacaaaag tgacagaaag tcagtaactg gaggagtcat caccatggac 4080 ggcgcaatag tacagtggat ctgcaagaag cagacggttg tctcgctctc caccatggag 4140 gccgagttta cctcagcatc acacgttgga cgagagctgc ttggcctgcg ggaactcgtg 4200 cgtgaactga aattcgaggc ggtacagccc atggcgatgt acatggacaa ccaggcagcc 4260 atcaggcagc tggagtccga ggacagcaca gcgagcgcca aacacgtaga catacgcatc 4320 aaatttgtgt gcgacttcgc gagaaagggg atcgtgaaac ccgagtacgt tgagtcgcgt 4380 cttatgatgg cggacctctt aactaaggcg ctcccggcgc cgaggatggc cgagctacgg 4440 gagatcttta acttgaagaa agcgtagcga gcgacggccg aggaggag 4488 // ID Gypsy-4_PIT-LTR repbase; DNA; PLN; 761 BP. XX AC AATU01002852; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PIT_; KW Gypsy-4_PIT-I; Gypsy-4_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-761 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002852; Positions 126914 126154. XX SQ Sequence 761 BP; 197 A; 167 C; 271 G; 126 T; 0 other; tgtagcgaat cagcggttgg tgtgagccac gacgcagatg gtccaacggt ggatcggcag 60 cacaggtggt tcacgtccga ctccgcgatc atggaagacc ggacgggcag aactggcttt 120 acggccgttt ggatgcgaaa tgtagggggc cagaacgaag tgagtgacat tgcagtacca 180 ctgggtcagc cagcacgtca gagcttggac tcacttaagg gcgtgcgacg accgcgagat 240 tggctcagtt gggaacttgc gccgtgagac acaagtggcg agtgcgaggc ggacgtgagc 300 gagtagacgt acacgagtgc ggcgagttga cgaggcattg cgagacggac gtgagcgagt 360 agacgtacac gagtgcggcg agttgacgag gcattgcgag acagacgtga gcgaggagac 420 gtacacgagt gaggagacgt acgtgagtgc gagacggacg tgagcaagga agcgtacgtg 480 agcgaggaga cgtacgtgag tgtgagacgg acgaaggcag gagtgtgaga attcgtagaa 540 ggactcgaag tagtattagc aagtcggcta gtagctacct gaatataaat aggagcggac 600 acgtgagtgg acgatccggc gcaggaacta agtggcttct gtcggccaac agaagagtac 660 atttcagtga gtcatcggct gccagacacg aacgacgcag cgcagcacgg tgcagctgta 720 cgacctgccc cacagccgga caagacaatt ggcctgtttc a 761 // ID Gypsy-12_PSo-LTR repbase; DNA; PLN; 543 BP. XX AC AAQY01000241; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PSo_; KW Gypsy-12_PSo-I; Gypsy-12_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-543 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000241; Positions 377061 377603. XX SQ Sequence 543 BP; 101 A; 130 C; 195 G; 117 T; 0 other; tgtcccgagt gggaacggtg gtcaccgtct cgggtacggt cgcggccgtc ctccggcagc 60 ctgtcaatca gcgcgtggac tactactcga ggatcagctg ttcgaggatg agctgactga 120 gcagtcatcg actttagcga ggattagctg gcggcgggcc cgttgcgtgg acaaagagtc 180 gtgatggaag cagtggcgtg ttccgcgagt aggcggtgac gtgaggagac aggatggagg 240 tcacgagcgc tgcgtagctc ggggcgtgag ccttgacgtg agccaagggc ggaggggtga 300 aaggagctga ccatgggttc gggggcggcg gtgtgtcgac actcaagttg aagagaagca 360 agagagagcg cggggcgagg tgctccgtgc cgggtaggtt ggtcagtcgt gaatttgccg 420 tggaaacaac aagttgaatc tttgtatttg actctgttgt atttcatacc gttccttccc 480 tgtccgtacc gtcctacttc gttctcgcag cggcagccgt cccttccagg gcgactcgtg 540 aca 543 // ID Copia-27_PIT-LTR repbase; DNA; PLN; 234 BP. XX AC AATU01001417; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-27_PIT_; KW Copia-27_PIT-I; Copia-27_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-234 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001417; Positions 170927 171160. XX SQ Sequence 234 BP; 67 A; 44 C; 68 G; 55 T; 0 other; tgttggaatt cacatgggag accaggcaca acgagacatg gacacactgg atgagaatca 60 ggtgggccag gacattcggg atgagaatca gttgggccag gtcattgtat gataacgggt 120 tgaatccgtt agtgttggta ggagctctgg aggagcgtga gctagcactt aaataattca 180 gtcttcattt taccttcaaa agtccagagt gctaccaaac ggaacggagt tcca 234 // ID Gypsy-3_ES-LTR repbase; DNA; PLN; 298 BP. XX AC CABU01002656; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_ES_; KW Gypsy-3_ES-I; Gypsy-3_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-298 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002656; Positions 30982 31279. XX SQ Sequence 298 BP; 78 A; 65 C; 73 G; 82 T; 0 other; tgtaatggag caactagtgt atttgcattg tacgagcgtt tcatgaacgt tgtatgagcg 60 cttattggat attgtgaact tgctttggat atggatattt ggcgacgttg gaggggtatt 120 gaagtagctt gaaggaagat caaaatccca gccccactcc ctcactctcc gagtgggcgc 180 tgagcggacc tggtctaaga aggctaaaca agagatcaaa caacaactgt gagtacccga 240 agccaggaac aacgagcttg ctcccttccc tcttttattt ctctgttcct gcataaca 298 // ID L1-5_VC repbase; DNA; PLN; 6922 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-5_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6922 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 484-484 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 2% divergent from copies of CC L1-5_VC. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 223..2376 FT /product="L1-5_VC_1p" FT /note="ORF1." FT /translation="MSAATSSRRQTRGPPQPPALEVACTQELQQAALRANL FT LVVSFTTIIRDRSRTELEGHTRPLQKSLYQALLPLLHSAIANRRQMPGTAG FT GERISNCAAGLSLTYDLAIPQQQRHQLISLLDTRSQLRTTVAGHTPVWWVA FT REGPYYVIPQPLQILTHGWPLGLTESAVRGQLSKLLPADVILGVSPWYHYR FT VHCPIPALDKWIISLRSGYRLPNDLPCRWHVNGALDFVVLATPFETEAYQT FT QKSAVAHIAARTMTTAGPNDDITTTVRAESSYAAATATQQREGPTLTTLHQ FT QPLQQQAMNGDVAASPQQEAGATAVGRRVAPAAADGQRQDATVESIQREPN FT PAATAQQEAGDTAVGRRAASAAAVGQRQDAIVHTIQRVPLPADTAQQEAGA FT TAVGRRAAPAAAVGQRQDAIVHTIQRVPLPADTAQQEAGDTAVGRRAASAA FT AVGQRQDAIVHTIQRVPLPADTAQQEAGATAVGRRAAPAAADGQRQDAIVH FT TIQREPNPAAPTQQEAGDTAVGRRAASAAAVGQRQDAIVHTIQRVPLPAAP FT AQQEAGDTAVGRRAAPAAAAGQRQDAIVGIIQRESQPAVAPQHDSLIIAAS FT QWDAIVDAAEQRQDATPPTTRQELQTTAKARRDSPSQADLATLEADRPYTT FT RSVRRRTLSRDLSSESAEDDAPMQNAYDTLSPLVDLQLEGFPLANTWPEAL FT QSLYSLSGTGPDMDLDLM" FT CDS 2379..6743 FT /product="L1-5_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MPRNRHSNRRAVQLLRIGSHNVRSLLGSGYNNASERT FT AQLIRQWARQRLDIVCLQETRVTAHRVPQARTILHNLSRAFHLGQWVSWWD FT PALDSRRGGGTAILIRSALLTSGALTFPGTQAQPTMSGDGRLLRLPICWGD FT HTFTLISAYLPSADPPAQRTFIQQRLRPLMADAGLHIWAADFNFVNNPDLD FT ASTPSARRNDVNTTAEFNVTCPGMIDTFRLIHPRRRAYTYVHPAGASRIDR FT IMVSQALEMAVYGSDTASGTPADHRITHTTIRAANSTHTPGPGLPRTRLHF FT LDHDDLCANLNMWVNNTAESAPTHPDDLIQWWPGFKRALALSAGRLNQQAR FT MRQLIGAADEAAAQAQADSILAEAEEGDASALPRAVLARSAQADAAHRAVA FT GVTRRTRYNWIRTGERPSPALTNQLRPPLATRRITALRRPNGTLCSNLQQL FT PNIMADYWQQIGAQPHTDPVARSRVLQALRARGRTCSPEEAARAGAQVVTA FT EEVQAALQAAAPGRAPGPDGIPVELYQRTNCAPLLAAVFTAMGELDRVPTG FT FLDGIISSFFKADDPTVPGNYRPITLLGTDYRTLARVLKQRLLPLFNRVID FT TEQTAFLTGRRIADSVLLLQLLPALLHMERRTCVAAFLDFYKAYDTLDRDF FT LFACLDELGVGVGFIAWVRRLHTSTQSAAIVNGYLSYWVIIAAGVRQGCPL FT APILYLAPAQALLTWLQYQQIGISLRDIHLAASQYADDCGAFLRRLADIPR FT FKAVMDVFHAASGQRLNNRKVELLPLGTFTRNTRPADLPPANAIGNHLIIP FT VTNLTHMANSVGNEQVADEVEQQPIVGSVVGDFRVLSVATTLGIRVADRPS FT LEQQSVSLSPVRNSLQLVAGMHLSAFGRAFAVSGYSISRVLYHLEFMGAPS FT NTSMNNLLGDCAAVIDRRQPPSVRDNAERRRAPGVGVAYMPFPPAIGGFGL FT IPLHEHLRARFACLSCRAILGMAGMLETNPMWTRVLLAILRHIHPAAHPLC FT LLAVRGDVRDGRVTTILGRPVPNDCPALTRILSAMTSLPQPVLLDAQHLAP FT GPWCYHIPLWGNPLLNDAQLDEHFGDLRNLRGLDTVGMAVRCHTAMSSTWN FT LVRMVGAQGLTEAQHFHCTNLFRTIVVRGILGLTPRHPLPASCQSGATAIT FT RISQLIDRLPPQWTIAAIVAINDRNHEIPPPQEAWKRIVKSLGWRFGQVLL FT HFSQVTVKFATTLLMAPSLRTLDIKHEDFILDAVDIVLSPENLANTLLDFR FT RTLSRMWRLRWDNEHKEAFWRLALDGFPAFPMHRAQRQRGIPAAMCPCGVR FT MLCGDRRHHFWDCTVALALREALQNELEFPDLFNRANLWLGIPPTWICSCV FT WEVVCLAAISSLNLGRRLLFKEGLQTNMPISTPSLNRITYEVISDFWARLT FT AFAARDYLPKHWDHVPHNHPFLYVNDADMVACRLPIYNDEV" XX SQ Sequence 6922 BP; 1516 A; 2029 C; 1837 G; 1540 T; 0 other; gctcaatctt ttccgtttcg gcaaaattgt tgctcaatct tttccgtttc ggcatgccgt 60 ctcacgctac caaacgcgac gcgggatccg gtatcggaac tgacatttcc atccttttga 120 atcagttgct gctatcctaa ctttaacatt agaaattctt acatccctag ccggcgacgt 180 gcggaacccg acctagtgca gtgacgctac tgggatcgca ccatgagtgc agcaacgtct 240 tcccgtcgcc agacacgcgg tcccccgcag cccccagctt tggaggtcgc ttgcacacaa 300 gaattgcagc aagcggcact cagagccaac cttttggtgg tctcgtttac caccataatc 360 agagaccggt cgaggacaga actggaggga catacccggc cattgcagaa atccctctac 420 caagcactcc tacccctcct gcactcggca attgccaacc gccggcagat gccaggtaca 480 gctggcgggg agcgtatatc caactgcgcg gcggggctat ctttaacgta tgacctcgcc 540 atcccccagc agcaacggca ccagctcatc agcctcctag acacacgcag tcaactgcgt 600 accaccgtgg ccggccacac accggtctgg tgggttgcca gggagggtcc atactatgtg 660 ataccacaac cgctacaaat ccttacccat ggctggccgc tcggcctgac ggaaagcgcg 720 gttaggggac aactatctaa gttactgccg gcagacgtaa tcttaggagt ttccccatgg 780 taccactaca gagtccactg ccctataccg gcactggaca agtggatcat atcccttcga 840 tctggatatc gcctccctaa cgacctgcca tgccgctggc atgttaatgg cgcgctggac 900 ttcgtcgtcc tggccacgcc atttgagacg gaagcgtacc agacgcaaaa atcagcagta 960 gcacacattg cggcacgaac catgactact gctggaccaa atgacgacat caccacaacc 1020 gtacgcgcgg aatcctcgta cgccgctgcc acagccacgc agcaaaggga ggggccaaca 1080 cttaccactt tgcaccaaca accactgcag caacaagcta tgaatggcga cgttgctgcc 1140 tcacctcagc aagaggcagg cgctaccgct gttggccgac gggtcgcacc cgctgctgcc 1200 gatgggcagc ggcaggatgc caccgttgaa tccattcagc gggagcccaa tccagctgcc 1260 acagctcagc aagaggcagg cgacaccgct gtgggtcgac gggccgcatc cgctgctgcc 1320 gttgggcagc ggcaggatgc gatcgttcac accattcagc gggtgcccct gccagcggac 1380 acagctcagc aagaggcagg cgctaccgct gttggccgac gggccgcacc cgctgctgcc 1440 gttgggcagc ggcaggatgc gatcgtccac accattcagc gggtgcccct gccagcggac 1500 acagctcagc aagaggcagg cgacaccgct gtgggtcgac gggccgcatc cgctgctgcc 1560 gttgggcagc ggcaggatgc gatcgttcac accattcagc gggtgcccct gccagcggac 1620 acagctcagc aagaggcagg cgctaccgct gttggccgac gggccgcacc cgctgctgcc 1680 gatgggcagc ggcaggatgc gatcgtccac accattcagc gggagcccaa tccagctgcc 1740 ccaactcaac aagaggcagg cgacaccgct gtgggtcgac gggccgcatc cgctgctgcc 1800 gttgggcagc ggcaggatgc gatcgttcac accattcagc gggtgcccct gccagctgcc 1860 ccagctcagc aagaggcagg cgacaccgct gtgggccgac gggccgcacc cgctgctgcc 1920 gctgggcagc ggcaggatgc gatcgttggc atcatccagc gggaatccca gccagcggtc 1980 gcacctcaac acgattccct cattatcgcc gctagccaat gggacgcgat tgtcgacgcc 2040 gctgaacagc ggcaggacgc tacacccccc accacgcggc aagaacttca gacaactgcc 2100 aaagcgagaa gggacagccc atcgcaggca gacctggcaa cgctggaagc ggaccggcca 2160 tataccacgc gctcagttcg acgcaggacc ttgtcacggg acctgtcctc ggagagtgcc 2220 gaagatgatg cacctatgca aaatgcctac gacacgttat cacctcttgt agacctccag 2280 ctggaaggct tcccactcgc caacacctgg ccggaggcac tacaatccct ttactccctt 2340 tcgggcactg gcccggacat ggacctggac cttatgtaat gcccaggaat cgccactcga 2400 acaggcgggc cgtgcaactt ctacgcattg gctcccacaa cgttcgcagc ctcctgggat 2460 cagggtacaa caacgcatcc gaacgcacag cccaactcat ccgtcaatgg gctaggcaaa 2520 ggctggatat cgtctgcctc caagaaacaa gggtaacggc tcaccgtgtg ccccaggcac 2580 gaacgatact ccacaacctg tctcgggcgt ttcacctggg ccagtgggta tcctggtggg 2640 accctgcgtt ggatagccgg cgtggaggcg gaacagcaat ccttatacgc agcgcacttc 2700 tcaccagcgg ggcattaacc ttcccgggga cacaggccca acctacgatg tcaggagacg 2760 gtcgtctttt gcgcttaccc atatgctggg gagaccatac ctttacttta atcagtgctt 2820 accttcctag cgctgatccc ccggcccaaa ggacttttat tcagcaacgt ctacggccgc 2880 ttatggcgga tgctggactc catatctggg cagctgactt taactttgtc aacaatcctg 2940 acctcgatgc atccactccg tcggcacgga ggaatgatgt caacaccacg gcagagttta 3000 acgttacttg cccggggatg attgacacgt tccgcctaat acacccccgc cggcgtgctt 3060 acacatacgt ccatccagcg ggagcttccc gtattgatcg cataatggta tcgcaagccc 3120 tggaaatggc agtctatggc agcgatacag cctcagggac tccagcggat caccggatca 3180 cccacactac catccgggca gccaatagta cgcacacacc aggacctggc ctaccccgta 3240 ctaggcttca cttcctggat catgatgacc tatgtgcaaa cttaaatatg tgggtaaata 3300 acacggcaga atcagccccc acgcacccgg acgacctcat ccaatggtgg ccaggcttca 3360 aacgggcgct ggccctatca gctggccgcc taaaccaaca ggcacgcatg cgtcagctaa 3420 ttggagctgc agacgaggct gctgcccaag cccaggccga cagcatcctg gcggaagcgg 3480 aggaggggga cgcttcggct cttccacggg cggttctcgc taggtcggct caggcagatg 3540 cggcacaccg ggctgtagca ggcgtcacac gacgcacccg ctacaattgg atacgtacag 3600 gcgaacgacc tagcccagca ctaaccaacc aacttaggcc acccttagca acccgcagaa 3660 tcactgccct acgaaggcct aatggtactc tgtgtagcaa tttacaacag cttcctaata 3720 tcatggcgga ttattggcaa caaataggtg cacagcccca tactgaccca gttgcgcggt 3780 cacgtgtcct ccaagcgctc cgtgcgaggg gcaggacgtg ctcaccagaa gaagcggcta 3840 gggcgggagc gcaggttgtt acagcagagg aagtgcaagc cgctctccag gcggcagccc 3900 cgggccgtgc tccgggtccc gacggaatac cggtggaatt ataccagcgt actaactgtg 3960 cacccttact ggctgccgtt tttacagcta tgggggaact agatagggtc ccgactggct 4020 ttctggacgg cattatttcc tcttttttta aagcggatga ccctacggtg ccgggaaatt 4080 atagacccat tacgctgctt ggtacagact atcgaactct cgcacgtgtt ctcaagcaac 4140 gcctattgcc gctgtttaac cgcgtcatag acacggagca gacagccttc ctcacaggca 4200 ggcgaatcgc ggatagtgtg ctcctcttac aactgctgcc cgcgcttctc catatggagc 4260 gccgtacttg tgtggcagct ttccttgact tctacaaagc ctacgatacc ctagatagag 4320 actttctgtt cgcgtgtctg gatgaattgg gggtaggtgt gggctttatt gcttgggttc 4380 gacgtctgca tactagtacg caatcagcgg cgattgtcaa tggctacctt tcgtactggg 4440 ttattatagc ggctggcgtc aggcaaggct gtccgcttgc ccccatccta taccttgcgc 4500 cagcacaagc attattaact tggcttcaat atcaacaaat cggcataagt ttgcgtgaca 4560 ttcacctcgc tgcgtcacag tatgcggatg attgtggtgc ctttttacgt cgcctagcgg 4620 acattccccg cttcaaagct gtcatggatg ttttccacgc agcctcggga caacgactca 4680 acaatcgcaa ggttgagctc ttgccgcttg gcacgttcac ccgcaataca agaccggcgg 4740 acttaccacc agcgaatgct attggtaatc atttaatcat cccggttact aacctaacgc 4800 atatggcgaa ctctgtgggt aatgaacaag tagcagacga ggttgaacag cagcctattg 4860 taggttcagt agttggcgat ttcagggtgc tctcagtagc tacaacccta gggattcgcg 4920 tcgcagatag gccttcgctc gaacagcaat cggtttcgct ttctcctgtg aggaatagct 4980 tgcagttagt cgctgggatg catttatcag cttttggtcg agcttttgcg gtatcaggtt 5040 atagcattag tagagtcctg taccacttgg agtttatggg ggcacctagc aacacctcga 5100 tgaataacct gctgggagac tgtgcggccg ttattgacag gcgtcaaccg ccatctgtgc 5160 gggacaatgc tgaacgaaga cgggccccgg gtgtgggagt tgcatacatg ccgtttcctc 5220 ctgccattgg aggtttcggt cttattcctt tgcacgaaca tctgcgtgca cgatttgcct 5280 gtttgtcctg tcgtgcaatc cttggtatgg ctggtatgtt ggaaactaac cccatgtgga 5340 ctcgggtatt actggcaata ttgcgtcata tccacccggc ggcccaccca ttatgtctgt 5400 tggccgttag gggagatgta cgagatggcc gtgtcactac tatcctgggt aggcctgtgc 5460 cgaatgattg cccggcatta acacgaattc tatcagctat gacttcccta ccacaacctg 5520 tccttctgga tgcgcagcat ctagctccgg gtccttggtg ttaccatatc cctctttggg 5580 gaaacccttt gctaaatgac gctcagttgg acgaacattt tggtgatctt agaaatttgc 5640 gtgggttaga tacagtaggt atggccgtac ggtgccacac agctatgtcg tctacgtgga 5700 atttggtgcg catggttggt gcacaaggcc ttactgaggc gcaacacttt cattgtacga 5760 atctgtttcg tactatcgtg gtacggggca tattagggct tacgccgagg catcccctgc 5820 cggcatcgtg tcagtcgggg gcgactgcca taacgcgtat atcgcaactt atcgaccgcc 5880 tacccccgca atggaccata gcggcgatag tggctattaa tgacagaaac catgaaatac 5940 cgcctccgca agaggcctgg aaaagaattg tcaaaagctt gggatggaga tttggtcaag 6000 tgttactgca tttctctcaa gtaacggtta agtttgcgac gactttacta atggcacctt 6060 ctttacgaac gcttgatatc aaacatgaag attttatttt ggatgctgtt gatatcgtct 6120 tatcgccgga gaacttggcc aatactttgt tggacttccg tcgtactttg tcgcgcatgt 6180 ggagacttcg gtgggataac gagcataaag aagccttttg gaggctggct cttgatggtt 6240 tccctgcctt tcctatgcat agggcgcaac gtcaaagagg tatcccggct gctatgtgcc 6300 cctgtggtgt acgcatgctt tgtggggatc gtcggcatca tttctgggat tgtactgtcg 6360 cgttggctct tcgtgaagct ctgcaaaacg aacttgagtt ccctgacctt ttcaaccggg 6420 ctaacctgtg gttgggcatt ccaccaacct ggatttgttc gtgtgtatgg gaggttgtat 6480 gcctcgcggc catcagctca ctcaatctcg gtcgccgttt gttgtttaag gaaggtctcc 6540 agaccaacat gcctatatca acgccatcgc ttaaccgcat tacatacgag gttatctctg 6600 acttttgggc ccgtttaact gcttttgcgg cacgggatta cttgccaaaa cattgggatc 6660 atgtacctca caatcaccct ttcttatatg tcaatgacgc agacatggtt gcttgccgtt 6720 taccgatata caatgacgaa gtttgagggc gcacgtcgga gcctcaattt tttgtttaag 6780 cgtactaact gaggccgtgt gtccagtgaa gttagtacgg cctggccgag ttctttttga 6840 ataaggccca cagtgttgtg cgggaggcgt tcctatgggc gctgcactcg acccgttcgg 6900 ggtccactgt aacaatcgca tc 6922 // ID Gypsy16-LTR_VC repbase; DNA; PLN; 415 BP. XX AC scaffold_18; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy16-VC; KW Gypsy16-I_VC; Gypsy16-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-415 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 144-144 (2008). XX DR Genome; scaffold_18; Positions 1993288 1993702. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 415 BP; 112 A; 116 C; 78 G; 109 T; 0 other; tgtaagagcc tggctcagga cttaagatat ttccgagtaa ggactccaat tcctcttatc 60 attccatcgt cgaggcgaat atcgtacaca caatacatac aactattcaa gtcatctttc 120 ggttataacc gtacttagca gtacatgatt acggctacgg ctatatcgat ccgtacacat 180 acttgattcc gtacaccatc tgcccgttca cggccagacc ggtatcgtaa ctcttctctg 240 gaaggtgcga ctctcttccg caggaatatc tactattgta cggcatctta tcccgagcgc 300 ctccgacgga ctgcaagcga ctataaaacc ccaaggaaaa cccccggtgt ttatcaacac 360 cttcataagt ggtctagtcg ctaaatccgt ctaagtaacc aggtaggctc tcaca 415 // ID TSE3_LTR repbase; DNA; PLN; 947 BP. XX AC AJ439555; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE3_LTR, long terminal DE repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TSE3_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-947 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439555; Positions 1 947. XX SQ Sequence 947 BP; 347 A; 206 C; 156 G; 238 T; 0 other; tgtaaccaag atggcctttt ctggtaacca aaaaatgacc ttttggtgac acaaaacctc 60 catatcacaa ttactcaatt aaatggcatc tctatgagag ctatgacatg aataagagtc 120 actagcctca aatggcatag tgtgacactt tattccatca ctttaaaccg tctcctcagc 180 aattaggaac gtcaggagca tatcacccag aaacagccgt agaacagtaa atcgacctgc 240 ttgatgggac atgtgacatt ccaccgtgca ctttaggaaa tcacataggt aactgcctgg 300 gatataaata ttaaatccga acacccgaac caatcagacg aagcacaacc acttcggtga 360 caagggacga tgagttgcac aacctgcaca agctcactta gctaacaggg caacgggagt 420 ttgtccacac tggacagtaa tgacaaagaa gaagacattc ctcgttcgaa cgtattctaa 480 tgaatacaca tcgaaggatt ggagaacatt ctgcattcag aaattctcta cattttctat 540 ataagaataa tacaaacttt aagtttgttt atttcctgtt atctttcaga agaaagaacg 600 aactaaggtt aaggaagaga actaagactt attaagaaga tcaatcgata atcaacgtta 660 acttaatcta ttaagcataa cgaagaatta caaaaaagca caaaaggatt aataactctg 720 tttaactatt actagctatc taagacctct acgcaagtta gaatcgaaga acctagaatt 780 aaaatagcat aagcaagacg tacactctct tcttaccctc cttacttgga acaagaaata 840 ttcaacctta ctagttcgtt cagaaagaca tctcaagaac gactcagttt gaataaccta 900 cggacgcatt ccaaccctaa tcacaacaaa acacctgagt cgttaca 947 // ID Harbinger2-2_ES repbase; DNA; PLN; 4026 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 13-AUG-2010 (Rel. 15.09, Last updated, Version 1) XX DE A family of autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW Interspersed repeat; Harbinger2; Harbinger2-2_ES. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-4026 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1221-1221 (2010). XX DR [1] (Consensus) XX CC Harbinger2-2_ES belongs to a novel clade, Harbinger2, of CC Harbinger DNA transposons. This clade includes transposons CC present in protozoan (brown alga), fungi, choanoflagellate, and CC metazoans. CC Harbinger2-2_ES is a consensus sequence of a family of autonomous CC Harbinger transposons that were active in the red alga genome CC very recently. The consensus was derived from 3 copies >98% CC identical to it. There is not enough sequence date to define the CC 3' terminus of this transposon. HArbinger2-2_ES codes for the CC 363-aa TPase (2 exons). XX FH Key Location/Qualifiers FT CDS join(315..560,1255..2094) FT /product="Harbinger2-2_ES_1p" FT /note="Harbinger TPase." FT /translation="MAVMLAMMGEEDLFLVMGAYALQEMALYDQLVAPTTL FT PGVCPHFDFFEVIGGFDFKELFRFEKPHFLRLLDALELPEYFELHGGYGAS FT KVPARLALGLTLWRLACPTTLLRDRLFWGLAEPLICEIFNATIECIYDRWG FT HLVDQLQHEAILPKIDMFCEAIQDMGSPLDRCWGFIDGTVRAIARPWRMQR FT LWYNGWKRKHALKYQAVDTPDGILRQLWGPMLGRRHDVALLGESALLQSMQ FT QWFNDDAGTPYYIYGDPAYQISPWLMAPFKGVLTPEMQAFNTDMSACRVTV FT EWGFGKIVALWPYVDYAKKQQVALSSCGLGKQYSVAGILTNCHSCFYGNST FT SKYFGVGPPSLGRYLSGEG" XX SQ Sequence 4026 BP; 1022 A; 1080 C; 988 G; 936 T; 0 other; agagggtttc cactagaaat cgctcctaaa atcgctccta aaatcgctcc taaagtcgct 60 cctaaaaagc gctcctaacg acgcgtcggt tcacgcggat agatggttaa tcgcgccgct 120 tgttccggtt tggggtcaac aagaccccga tttatggaat ctgcgacatg cttcgctgtg 180 gaaaccctcc ggccccccat ccactcggcc gctcggtcga ggtaggaggc agccctccac 240 catttgcgat ggcgcgcctc gcacgtgcac aggtccgcca tgagcggtac caaaagtgca 300 tccaatggat gacaatggcg gtgatgttgg ccatgatggg cgaagaagac ctgttcctgg 360 tcatgggcgc ctatgccctt caagagatgg cgctgtacga ccagctcgta gcacccacga 420 ccctccctgg tgtatgtccc cacttcgatt tcttcgaggt cattggaggg tttgacttca 480 aggagctctt cagattcgag aagcctcact ttctcaggct gttggatgcg ctggagctgc 540 cggaatactt cgaattacac aggtgagtct gatagagtcc cgtccgaaag gccatctgtc 600 tcatgtagat agactacgtt tgtttcagca caacatatac atgtacatac agcagtagtc 660 tacagcaccc agcagtgcta ggtgagacca cagcagtact gctgcagcat tgcgataggt 720 accggggtcg cggcatcggg tatcgccgta ggtgccggga tcgcaatgag cattgtagtg 780 cgttggaaca tcatgggtta gagcgcggcc ggaatcgatc cgctggtctg gtgtacacgc 840 catttgaaaa gctgtatttt ttttgttcat gtactttgaa acatgagctc gttcgtcggt 900 ggacaaatac ctaccgtagt ctactcctgg ttgctaatcg gcctcgtatt atgacaatct 960 gctgcagcag tagtacctag aaatacacgc aacacaacag ctgtgaactg ccaaccgtga 1020 gagatgtgtt gtccttacca cggggttact gacgccagcc gaaacactgg cctgaacaaa 1080 ggccctccga aaacgccccc agactctcaa tccttcctca tcgtgctctc gctctctctc 1140 tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc tcgctctctc 1200 tctctctctc gatatgcgta ttccttcccc cgggcgctac tgtttcgttg cagagggggt 1260 tacggggcat ccaaagttcc cgcgcggctc gcactgggtt taactctgtg gcgcttggca 1320 tgcccgacga cattactccg cgatagactg ttctggggct tggcagaacc tttaatttgc 1380 gagatcttca acgctaccat cgagtgcatt tacgatcgtt gggggcatct agttgaccag 1440 ttgcaacacg aagcgatcct gcctaagatt gatatgttct gtgaagccat tcaagacatg 1500 ggttcccccc tagaccgctg ttggggattt atagacggaa ctgtccgtgc gattgctcgc 1560 ccgtggcgca tgcagaggct ctggtacaac ggctggaaac gtaagcatgc cttgaagtat 1620 caagcagtag acactcctga tggtatttta cggcagctgt gggggcccat gctagggcgt 1680 cgccatgacg tcgctctgct gggcgagagt gccctgctgc agtctatgca gcagtggttc 1740 aacgatgacg caggcactcc gtactatatt tacggagacc cagcctacca gatatcgccg 1800 tggttgatgg cgccgttcaa gggtgtgctc acgcccgaga tgcaggcttt caacactgat 1860 atgagcgctt gcagagtgac agttgagtgg ggcttcggta agatcgtggc gttatggcct 1920 tatgttgatt acgccaagaa gcagcaggtc gcgttgagct cgtgtgggct ggggaagcag 1980 tactccgtcg ctggcatttt gacgaactgt cactcttgct tctatggtaa ctcgacatca 2040 aaatactttg gagtagggcc gccgtcgctt ggaaggtacc tcagtggaga agggtagggt 2100 tagggcgttg ctgtgatcac ggcgccttgt gtcatcgaaa gtaggtcgtg gaagaacgag 2160 ctgtaacggt cctgaaagtg cgtgtgtggg tggggggatt agacgtatgg atggatgttt 2220 gcaattggtg cggtagaatc tcttgtgtgt caacgtacag ctgtgcacat tgatgttgtg 2280 agggttttgc gtcgcaacgt tgtcgtgccg gcggaaagct gccatggttg ttgtcgcggt 2340 tttgtcgttg ttttttgcag gcttgactaa gaaacaagcg ctaagagcgt tgatggaaaa 2400 ccccggaaaa atcttcaact gattatcttt tgcattcgcc cggactacaa tgtcagggga 2460 gctgtcacgt caacgttccg aacaacacct caatcggtgc gtccgaagaa aaaccgaaac 2520 accgaaccgc gcagtgcagc gatgcgtgcg gttcgaagtg gtgctacggg gatcttgtgc 2580 gctacgatag cgtaacagtc ttcaaagagt ggggcaaaat cctagcttgc ttgtatcagc 2640 ccaaacggtg gacttcatgg ataccctcac ggaaacttga acaagtacat gttgtttagc 2700 atgtttgttt accttggaga aataccaagc aagaccaatt ttgcatccat ccgagttgcg 2760 tcagaaaggg gacgggcaac tccgggaata cgtgctccaa atactcagaa caaattcctc 2820 agatagaaat catgttcaac tcaatgacca gttcaaatgg ccttcgaaag ctcaaaggct 2880 tcatccatga cttatcgaaa catgcaaaac ctttcctcca acacacatac atacgataca 2940 aggcctaagc ccgcacacaa accgacgaaa tacatccaaa cgtgtttgga aacaagcgtc 3000 aatgtagtac aactttcgtc gatactgctg cagcttcgat tcctccatct cagctaatcc 3060 atccaccagc cccctgcttg aaaatctcat ataataaacg caacgaagat tccattcaac 3120 atttaattcc agatcaactc cgcagagaaa acgccgagaa tgatccgaac atgaaatacc 3180 aaattcccat tcaacaacat ccaaatatag ataaactccg caaggagaac gcggaaaatc 3240 catgcatgaa ctacccaacc cgatgtcaga aatactgctt gttgtactgc ggcggggagc 3300 tggtgtcgcc cccccccccc ctcccccctc attaattccg acagcagtgc aacaatcagg 3360 ctcgattctg caacgtccag catgccaagt cggcattcca actccatcaa ataagactcc 3420 aaacacgaca ataatttaac accaaaatat gtcacaaact gaagttcaga tacgtctgcc 3480 gcgaataagc acacgccatc gtacgaatcc gccaacaaca atttgtaacc cgcaatgatt 3540 gccttgtcgg ggatggttgc atcggaggga cgcagaaaca gcacgccccc ccccaacctc 3600 gccaccctgc acgccacacg tcaaaccaac gtctacgcat acccaatacc aagagaaata 3660 caggcgtaaa ctacttgtgg gacaaaccgc acacagaata tacaaccgcc agttgacatg 3720 tatcccctgg taactgccgc ccagccgcaa catcccgtct gactcccaga taccaataac 3780 aactatagaa tttcctacca gaggcctgga gatattgtca tttagcaagg tgaaacgcga 3840 gtagacattc caccgaaaaa aaaaaagcaa gcatgccagc aaacgaggca gcgaccgcgc 3900 gccgacgacc gcagaaatta tttgcagaga tacggcagct tcgtcaaagg ccaaaagagg 3960 agaatggtcg acataagaac ctgtaccatt accgagatga acaaagtggc aggcagcata 4020 catgca 4026 // ID Gypsy-3_ES-I repbase; DNA; PLN; 19104 BP. XX AC CABU01002656; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_ES_; KW Gypsy-3_ES-LTR; Gypsy-3_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-19104 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002656; Positions 31280 50383. XX CC Positions [3160-3645] - Integrase core CC 'CTAT' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 2827..4542 FT /product="Gypsy-3_ES-I_1p" FT /translation="MPAHTDDGTRLLVRNSAPLPLGSSGGRITRLPPSKTP FT RIYVPMLLRPWVLQACHATASFHLGTARTLRMLERFFWWIGMGLSVRWWLR FT HCLICQARKTSRQTYRWPTLTLPLPNGPGIVVSVDFFGPFPVTSRGNAYIL FT LFTDRFSRRADMYATTKAEFTAKGTANIFVNRYMALWVCPVTLLSDDGMQF FT CSKLSMAIYGLMKIKKVTTSSYHPQTNDGAECVNHTMAQTLAVVVNERQDD FT WDVHLPHVEFAYNNSVNTATGLAPNEVYIGRLPRLPLSVLDHPSVGGHQSL FT DRDQLVFFNLAVERQRRAYALVREQHAITVSRVERRNSALLDGLRQIPKYE FT VGGWAWVYNSAATIRQGVRKHTHDSVLKAKLSLNYTGPYKILAVGPAKAED FT SPDGKPVERKLLYLDLPSDMLGPESRNRVSVLRCKPCTNPYDTDDLPKYMP FT ANLSKYVLHSYSNKSPPYNLTADDILAESSRLDVENISGHQIVRGLGGVVA FT VLYLTHWIGLLTPSWERESDLQEYRKHILLYWSGNASQRVQGNRAYRNARI FT ASADRELARNQAETFHCSWVRVGFA" FT CDS 12654..17423 FT /product="Gypsy-3_ES-I_8p" FT /translation="MERLSADQRVSFESLWNRLPPHLKLVKFDLHGPGWSP FT EVITELGDLLHDFQDVFSTSSTDLGSCSLMPFEIKVPPDCPPVTSKPYRMN FT PLVAKQVDAILDQYLAAGLIQHSTSPYSSPIVVIPKKSGGIRITVNYRKLN FT HISSFGQLPIPRVDEILAKLNRGSIFSLFDFTGSFHQITVHKDTVPLTAFA FT TPTRLFEWLRMPMGASQSAGHFVKVINEVIKGLDGVEAYLDDVVVFDEGPW FT QHVRNMRTLFERLRKYDLKLSPSKATIGTTKADFLGHTISSKGVLPNARKV FT AALAGMPMPTTVKQLRSLMGGLSYYRRFLRDMAKRVKSITHLLKKGVPFAF FT TSDMETTVRSLLAELAKPPILVFPDWDAIADGTRPLRLCCDASSDGLGAAL FT EQEQKDGSVRPIVFISRATLDAERNWTALDLEAGAVVWAIKRLREYLRGTH FT FRIYSDNKALESLSKISEHNPRVQRWIELREAYSYTLEYRRGASNGNADML FT SRLPIEPTAADINGNSRLTSPEDVGVYLIRATGHAPPGQTTPGVGLGGLAP FT PSENAALGGLPLTSDDFADFRKHGPRMRIDDLDAPAGEFVARVFPYVNARG FT PLRHLADDRALSCTDHSVFAVPEVTSAATQKIQGAVPALRSSASPVVSPMR FT PLYRDTATVYGPSARPHTDTAAFALPVHDTQTADDNSRLPPVVSPATAIVD FT AGSHSYRLDAADSLPPPSTSRLQPHRIDPSELISTRTRRRTAAAAGQPQPD FT VNYGFGPDLSIPPHVPRAGASRRQTRVTPAATTPEPAVEPVPTVPVAPPET FT VTDAPTGPLLGLSQPAAAAGKATPAVDSMILNPAELEFRESVERYTRADWA FT REQQKEPVCEATIRYILLKRPQSLPVDFFARVSYHSRHRPSLEDIRELADK FT GRLVTDDGLCLLVRKNTKPPVSSDRPGGRAARLLNDEPTRIYVPMLMRPWV FT MQACHANALCHLGTARTLSLLERFYWWIGMSISTRWWIRRCLKCQARKTAR FT QTIRWPILTIPLPSAPGVAISVDYFGPLPTTPRGFSYILLFTDRFSRRANM FT YAVTDAEFTAEGTADVLVNKYMPVWGCPLSILSDNGLQLCSKLSVAILKLL FT RVRKITTSAYHPSGNGGVERANHTMAQMLAMVVNEGQDDWDIHLPHVEFAY FT NNSVSAATGLAPNEVHMARLPRFPLTVFDNIYARGHQSLARDQLEYCNLAA FT DRQRRSYELVREQHELTVSRMERRNSKLSDALHKLPVYATGGWVWVYNHLA FT TIRQGAKLTSKARADADSQVLKKKLSLNWTGSFKILAGPFKILAVGPCNKA FT PDGSPMADKLLFLDLPSDMPGVDAKRRVSVARCKPCANPHDSDDMPRFLPA FT GLTQYVLNNFTTKSPPYHVTADDVSAPVRRLEVEKITGHQSVRGRGGVIAV FT MYETYWKGLLRPSWEREMDLQHSRKQILLYWAGTPDQHRQTNRLYRRMRIG FT AAERELSRIKGERSSSPGYEYVPRDVWARRFRNTVLPVGAYFWYKAQDALW FT WLGKISGHTPTTNVFFVRFLEDPGPVKITLSPSRYTTALGAVCGSRCLQLH FT RSSPFMRGMLRNVDESRGTAIDA" FT CDS 10439..12670 FT /product="Gypsy-3_ES-I_5p" FT /translation="MSTTYGSSTACGDTADGTRDGNKSHSPHGEASMTDCV FT ERNTRRFPVVCDSRSTKTERSPTATTEVLTPPYSEDAPIAPLAEQTAKNSR FT PSSREVRHVSNVMDSSESTTDYTPPPGCAVGRVEDLGKQTSPSSAKAGIRI FT YPPPPTDARCSPPAFDPSKEYCTPDMVLFGQAPSVFSQWTPSIFTVDGVEY FT SCGEQFFAAAKARLFGDQDTLRRIMRVSGPIKHKRYGRQVKGFDEAVWERE FT RENVVRVASYYNFSQNPAMRQHLLGTGDKMLVEASPFDAIWGIGHRADDPA FT AIQPSLWRGSNLLGKSLQVVRDLLREHAPTPTLPPQVSSDAQLRNTIHEVN FT PATQERISTAAAEEAAPSSGYRIKSAHVPRDHSAEVLAVTSAEYNEEDRVP FT LLAEHGPCLVGGVVTVDDASFTTRVKIHAGPAKSQYGCAALLDSGSPATFI FT NSNAVGTLKAMGAISEACISHGNSRSWGGFGKSESLQTSDTVRLSVQFFHG FT DTPSASLAVWAHIVPANTMQFPILLGRDSFMRFNTRTYRMLPPRPLDNRVF FT GEYTLAHQDDSGAVAYVPDFTAPADQFQLRYAGPTGTSLSDDHQMIEVNLV FT RSNGTPALTGQYLVDMLPDVSSNEEIFVSDGRQFVPLAGAAELEPGDLLGT FT AAAPLMRVPVEHLEQQFSDEADTSCSVPGPILGSTEDNADRTVDPQVRCHD FT PFVHNLRSTDLPVPDPGKSPPAAPAPRSHFALAATTACDGAVER" XX SQ Sequence 19104 BP; 3912 A; 5431 C; 4988 G; 4773 T; 0 other; ttgtggcgtc gtctgcagga caccggtcct tcgcttcggt gctcatcgtt cgcgtgaacg 60 tctcgcattt acgtcttctc gatttttttt agttacctgg ttttagagac gggcctcaac 120 acatcccatt gacagggtgc gccgagttgg agccaggtga ggtgcttgga gtggcgactg 180 ccccacttgt gcagattccg cttgcgtcga ttgatcctac accgcagacg gccgagggtg 240 atgggttgag tgaccctccg ccgccagccc gttccgcgga tgggccgccg tctcgcgtga 300 attctttgca ctcaaacatc ccggttgcgg atccggagat ctcggattcc cccgcggcct 360 cactgccgcc gaaaccgccg ccaccggatc tgttggaacg cctctcagaa gcgcagcgag 420 tgagttttcg cgagttgtgg caacgtttgc ctgcacattt gcacgatgtg acttttgatt 480 tacatgactc gggttggacc ccggaagcca tcgacagcct cgcggatgtg ctgtgtgact 540 tttcggatgt gttttcgcgg tcaccgtccg atttcggttg ctgttccgtg aaaccgtttc 600 gtttggaagt gcccccggga acgaaaccgt tggcctcgcg tccctgtagg ctcaacccat 660 tggtggagaa aaaggtcgat gcaattctcg atcaatacct tgctgccggt cttattcagc 720 actcgcaatc gccgtgggcg agccctctgg ttgtcatgcc taaaaaggac ggcaatctgc 780 gtttgaccgt gaactacaaa aagcttaaca aattgtgcag ccttggtcaa caaccgcagt 840 cgcgagttga ccacatcatc gattccctgc acaagggcaa ggtgttttcc attttcgatc 900 ttaactccgc tttccaccaa atcaccgtcg aagaggacat ggttcagctt acggcgtttt 960 gtacgcccac gcaacttttc gagtggctcc gtatgcctca gggaagctcc gtggcaccgt 1020 cgtggttcac catggtcatc aacgaagtgg ttaaaggtct ggaccatgtg cttgcatacc 1080 tggacgatgt gattgtgttt gacgtcgacc ccatccacca tgtcgccaac atacggctat 1140 ttttggagcg tttgcgcaag ttcaacctca agctttctcc tttcaagagt cgcgtcggcg 1200 ctaaggaggc tgtttattta ggtcacacaa tctcccctgc gggtgttagt cctcgtgccg 1260 ataaggtcga agccctcaca aaaatgccgc tgcctaacaa cgtcaaaaag ctgcgttcct 1320 tgctgggtgg gctttcgtat taccgcaaat tcatcaaggg tttggccatg cgcgtgaaac 1380 cactcacaga ccttttgcgt aaggacgcga agttttgttt tacgccggct atggcggata 1440 ccgtcaaaga actcttggcg aaactgtcag aacctccggt tttggctttc ccggactggg 1500 acgctgtcgc agatggcagc cgccctctcc ggctttgctg tgatgcctgt atcgatggtt 1560 ttggtgcggc ccttgaacag gaacaggccg atggttccat ccgtcccatt ctgttcgtta 1620 gccgcgctac gctcgaatcc gagcgcaact ggacagtgct cgacttggaa gctggaagta 1680 tcgtgtgggc aattaaacgc ttacgcggtt atttttggtc tacgcacttt ctgatttatt 1740 cggatcacaa gggtttggag agcatcgtca aggtgggtga acacaacgcc cacgtccaac 1800 gttcgctcga gttcctttcc tcgttcaatt acacccttgt ctaccgcaaa ggcactgcca 1860 acgccaatgc ggattttctt tcgcggttgc ccttgccggc aaccgacacg gatagacacg 1920 tgacaccagt atcgcagtcg atgacgccgc gggcgtgtat ctcattcgtg cgtgcggacg 1980 gagttatcac tctagttcga cgccgaacat cggcttgggt gggcttgaca ttgacgatca 2040 acgagacgcg ttggcacacg cgcctctgac ggaggatgac tttggagact tccgccgttt 2100 tgggccacaa atggtcctgc cggctctgtc gccctcctcc gtagttgatt cgtcgaaatt 2160 ttcgccgcct ggtgttttcg ctgtcgtttg cgatgcagcc cccgagagtt ctgtgcccga 2220 tggacctcct ccggcttccg tttctgcgga gacagacgcc gctccctcgt ccaccgtcgg 2280 aacctcctca gctgccctgt cgctttcgcg tggccctctg atttcttctc gtacccgggc 2340 gagaacgaat tcggcctcgg gcatggctca tagccgtcct aattattttc cgaaacaacc 2400 ccgggccgtt gtggtgccca gaccgccgcg acctcctcga acaccggccc ggtcgagccg 2460 tgccgcgcgg tctacgagaa ccgtgggtag ccctacttct ggcccgctgc cttctccggc 2520 gccggctgaa ttgcagccgc cgccgcccgc ggcgcccatg ccgccagtgt tgtcgcccgc 2580 aggtactagc cctgcgactt ccgtggtgcc gcccacggcc gctgaggaag ctcacctccg 2640 cgactgtgtg catacaatct cgcatgccga ttgggcccga gaacagctgt cagaaagtga 2700 gtgtgtcgcg gctatacatt ttttgtcttt gggatccccg gcggttttgc cggatacatt 2760 ctgggattgc ttgccctgtg cgcaacggcc ggcgttgtct gatgttgtcg ccttcgcatc 2820 taaaacatgc ctgcacacac agacgatggt acgcgattgt tggtgcgaaa ttctgcccca 2880 ctgcctctcg gtagttcggg cgggcgtatc actcgcctcc cgccttcgaa gactccgcgc 2940 atatacgtgc ctatgctatt gcgaccttgg gtcctacaag catgtcacgc caccgcgtct 3000 tttcacctgg gcaccgctcg gactttacgt atgttggagc gatttttctg gtggattggg 3060 atgggtttgt ccgttcgttg gtggcttcgg cattgtttaa tttgccaagc gcgcaagact 3120 tcccggcaaa cgtatcgttg gcctacgctc actctgcccc tcccgaatgg gccgggtatt 3180 gtagtgagcg tcgatttttt tgggccattt ccggtcacgt cccgtgggaa tgcatacata 3240 cttttgttta cggaccgttt cagtcgacgg gcggatatgt atgccactac caaggcggaa 3300 tttaccgcta agggaacggc taacattttc gtcaaccgct acatggcgtt gtgggtttgt 3360 ccggtgactc ttctttcgga tgacggtatg caattttgtt ccaagttgtc catggctatt 3420 tacgggttga tgaagatcaa gaaagtcacc accagttcgt accaccccca aactaacgat 3480 ggggccgagt gtgttaacca caccatggct caaacgcttg ctgttgtggt caatgagcgt 3540 caggacgatt gggacgtcca tcttccccat gtcgagtttg catacaacaa ctcggtaaac 3600 accgccacag gtttggcgcc aaatgaagtg tatattggac ggttgccccg tctcccgctt 3660 tctgttttgg accaccctag tgtgggtggc catcaaagtt tggatcgaga ccagctcgtt 3720 ttcttcaatc ttgcggttga acgccagaga cgagcttacg cgttggtgcg ggaacaacat 3780 gcgattacgg tgtcgcgtgt cgaacgtcgt aactctgcac tgttggacgg tctgcgtcag 3840 atcccgaaat acgaagttgg tggttgggct tgggtctaca actctgccgc tactattcgg 3900 cagggtgtgc ggaaacacac ccatgattcg gtgctcaaag cgaagctttc gctcaactac 3960 accggaccat ataaaatcct tgctgttggc ccggctaaag cggaggattc accggatgga 4020 aaacctgtgg agcgcaaact tctctacctg gacctgccgt cagacatgct gggaccagaa 4080 tcccgcaacc gtgtctccgt cttgcggtgc aaaccgtgta ccaacccata cgacacggat 4140 gacctgccta agtatatgcc ggccaatctg tcgaaatatg ttttgcactc gtatagtaac 4200 aagtctcccc cgtataattt gactgctgat gatattttag cggagtctag tcgtctggat 4260 gttgagaata tttcaggaca ccaaattgta cgtggactcg gtggtgtggt agctgtcttg 4320 tacctgactc attggattgg tttgttgaca ccgtcgtggg aaagggagtc tgatttgcag 4380 gaatacagaa aacacattct gctttactgg tctggtaacg ctagtcagcg cgtacaagga 4440 aaccgagctt atcgtaatgc tcggatagct tcggccgacc gagaacttgc tcggaatcag 4500 gccgaaacgt ttcattgctc ctgggtacga gttggtttcg cgtgacgttt ggttggctcg 4560 cttctctgtt tctgttttgc cccgtgggag cccacatttg gtacagagct ttggatggac 4620 tttggtggct tgggcagatt agtagtttcg taacaggcca gtacattgtt cgatttttgg 4680 acacccccgg ccctcgaaag ctttctctcc cagagtatag ttactccacg gctttggatg 4740 ctccttgtgg ttcttggtgc ttgcaaaaac accgtactcg tggtttgacc aacccttcca 4800 cggatgatgg cgttacgtcg cgaacaccag gcgttgtggc acagctggct gttgccccat 4860 ctggatctgt gctttgatac catgccgcct acgggccgct acatgttttt tatcttttgt 4920 tctacatcgt acgcagtggt acgctagcgc gtgtttgggt ggtgtgagct tcttccattg 4980 ttgcaatagt caccccgacc tttgcgtgcc caacgcgacc gaaccccatt ttgattcaga 5040 ttggttccgt cgttggcgat gtgattctca gtagtcatca ctgtgtggtg tggggatggt 5100 tttgttatgg tatttggagg tagacaggtg atagtggttg atcatggtta tttggcgccg 5160 tcggatgcta tggcgtgacg tcatgctaga tcagggcttt atgccgagac atgtgccctt 5220 ctgttcagtg tgtgcgtaca ggcgatctat gatcgtgtgt gcgtgggata ttgtgagttg 5280 gcttggaaag cgtcaatcaa gagaaagaga acaacggaaa gcaacagcaa cctgctactg 5340 tggtcggaca agagagttcc acacagctca aaggtgattg attctgaagg aaggggtcaa 5400 ataccattac actggcgttg ttggttttgg tcgtgttgct tgattcttga gttcaattga 5460 ttttgatttt tcgctttttt gcagtctgct gaatagcggc aaggccacag ccttggccct 5520 gcttcggcat gtcggctcct gatgagccgc gaggtagcag cgactccgct acctcgaccc 5580 cggtcccttt gtcgccgcac aacactcctg atgatgatgg tccgaatgcg tcgcgtagct 5640 cgctccgtgt tgatgaggat tcgccgagtg cctccttgca tgttcgcggt cggacttttc 5700 agcagcagca gcagccacga tcgcgatcgc agttcggacg cacgttagca gacgtagact 5760 ctcaggaaga tgatgttgca cgatcgcaca ctgaaggcct tggtcgcgcg ccgcgctcca 5820 ggtctgtgcc ctctcgtgat tcagctcgcc gctggtcatc agatgtggca caccgccttg 5880 agacacctgc agaaatgcag atgcgctcgg tggttcaacg ccacactcac accccgcatc 5940 catatccgaa cacagcaatg tgccggaatc ggatggtgaa ggctctcgct ctccgagttt 6000 gattgaagcc tcacgcacgc acacgaatga agctcaccgc tccattgtgc gcgtgtcgga 6060 cgcccccagt ggcgcggtcg agtctagtac tcctgcccct ggtagccaag ctgtcgctgt 6120 cggcatgttt gaacctcaga gtttgaatta ttccgacgcc agcccggctg catcccattc 6180 cgagcgcgga tatgtgccga atgtggatag tgttggctct cactccacga gtttgatcga 6240 tgcctcacac acgcactcga ttggagttgg cagctccgtc gaatgcacgt cagaacgcac 6300 cagcggagcg gtcgccgcga gcgattccgc ccctggtttc gctgtcgcaa gcccccgaga 6360 aactatcaaa acgttctctc ggctgcatgc cgacacccct tctttatcgc attccgagaa 6420 caccacaaat gtttcggaga tggatggaga tggctctcgc tgtcaaaggt ttgagagtca 6480 cttgcgatct cacagcagtc ggataccctg agatccactg atggagagac accgcaagcc 6540 accagtggcg catttgctgc aagcaaccct gccccgcctg gtgccgcgca tgatgcaagc 6600 gacgctgcac ttgtgtaccc gcgtccacaa tcacgggaat gaatacacag acagtagtga 6660 atatgttccg actggcaacc atgcttctgc ccctgtccgc accgatgcaa ttaattgcag 6720 gcagagacgt agaacctgta tcttatgtat cttatcttta cccgccgtag acgaagatcg 6780 tacccctaca gcagcccctc ctctcccatt tgcgcccaca cccgtgcaaa ctacgagtat 6840 gcctgttgtt agacggtcac ggcgtctagc tggtaaacca ccatctgacg ctctcgatct 6900 agcacggtca acggccgctc caacgcgtcc tgtgcctgcc catgaaatta ccgaaaaacg 6960 actacaccca gttgtacccc atggtaatgc aatctcgtct gttggacttt cacccagctc 7020 accggctcta atgagcatgg tttgcagcag gctcgccctt acccttcggg gtatggttcg 7080 cagagcccct cgctcaccga tcctacggga gatttggttc gacgcgaaac cctcccagct 7140 caccggctct aatgagcatg gtttgcagca ggctcgcact tacccttcga ggtatggttg 7200 gcagagcccc tcgctcaccg atcctacggg atttggttcg acgcgaaacc ctcacaccga 7260 ctcacagggg ttcggtgcgg agccctcgct caccgatcct acgggatttg gttcgacgcg 7320 aaaccctccc aacgacccac aggggttcgg tgcggagccc tcgctcaccg atcctacggg 7380 atttggttcg acgcgaaact ctcccaccga cccatagggg ttcggtgagg agcacacgct 7440 caccggtact ttcgggattt ggttcgcagc acatggcgct caccggctcg aataagcttg 7500 gttccgagcc ccagcacgcc ggccctgcgg ggtacggtat gccataccag cagcaagggc 7560 tgttgctgaa tccaccactg tccatcgcta gaggtggtta tgtggtaccg cccccggccc 7620 aaccgtcata cagccaaatg gcgcaaggac cgccggatct cagcctccga acggggggtg 7680 aattgttcct tgacattccg gtgtctaact tcgcgcacgt gcaccagcag gccttcacgg 7740 aagcatgcag gatacaagtc accaaggcgg ctacagtgct gacgacgatg ttagaaacct 7800 cggagagacc tatggtcatt ctccgtgaat tcatgcatca cgtcgctcat gcccctacgg 7860 tagacgcccc gttagtcgaa tcggtaacgc gccttctgca cgggctcaga ggaggttacg 7920 ctaaccttac aggtggctac cgcccggcgg aggtcaactg gtaccttccc ccttcgattc 7980 tgccaacgac gtttggtgct tctgcagcat tcgccaagca gacgggcgat ttccgtgtcg 8040 tcacccaccg aaaggtgaag aaagagcgcg ctaccgacag cagcagctcc cacagccgtg 8100 gcagccgtgg tcgtggtagt ggtcgaggtt cttccagcaa ccgtggacgt ggcaacaata 8160 acggtcaccg tcaacgaagt tcgcgagggt cgcgctcttc cgcagctagc gaaagtgacg 8220 cgtcggcttc cgtggccgcc agcagctcca agagatcgaa tcgaggcaaa cgtggcaaca 8280 agcgctctgg gtccaacggc cgccgagagg aggtcgctgt tgaacgcaag ccttcggcga 8340 ctaaaagcgt cagcaaggag gacacgagtc gtggccgtcg tcgtagccgg agtcatagca 8400 ggagctgtag cccacgccgc cgcggacacc gccgcgggca ccgaagcagc gacggctcgg 8460 aggcaccagc ctatgaggat cactcccctg tggagatctt tgacgcaaac caaccgcacc 8520 tgaccaccga tcttccactg gaagagcgtc tggaccaacc cctgacagcc ccacgtgatg 8580 acaggtgaag cagcgtatgg acgacggtat gaacggagga gaagctttca agcaccttct 8640 tcgtctgatc gcgtcccact tcaagcatga agaccgtgga gacgccttga caacgctgaa 8700 tgcgttcggt gttcccaacg gaactacgtt tggagaattt ttgcgacagt atcgtactgc 8760 cgtgaacaac atcacgcact attccagtct ttttagcctc aacgagactt ggattgtcgg 8820 gatcacaagg aataagatca acgaccagtt ttctgtgatg atgtctgact gttttccggg 8880 tgcaaagcgt accgctgcag aaccctacag tagtctggat gagatgtggc gagtgctgaa 8940 tgagttcacg acctctaagg ttaaggcaga gaatggcgag caatatgctg cgctctcgct 9000 tagtggatta tcgttgcatt cgcaaggcgg tagtcgttct caaggacgtt cgacgacgca 9060 atcgcagcag ccttggagct cccagggagc acgtggcaaa tcggtcatgc gtgttaaggc 9120 agagccaatt catgatgtgt tttgtgttag ctacgatgct tggccgctgg ccaccgatga 9180 tcattgggag acagtgcatg ctgttgtttc cagtggtttc aaacgtcaac tcccccccct 9240 ttggacacca ctccttagga ctagagctga ccgagcacaa gcgttcagcg cgaatgctgg 9300 ccgttgttta aactgtcacg ggtctggcca ctccatcaaa cactgtgaac agcctttcac 9360 caatgctagt ggtgtcctga acccagattt aggtgcactg actgatggtg atgacacgtt 9420 tcgcctgtgg caagagcgct tgcggtcctg gaggactaag cctgcgactg ccacaacaca 9480 cggctcacgc aactcgaatg gccaacaaaa ccggcgccgt tcacacagac cagctcatag 9540 agttcaatac gctggtaacg ctccaaaccc gcaacaatac actcagacgt ggcatcaacc 9600 gccaccacag ggcctgctgc aatctagtgc accagcccaa cagcacacat tggtagcata 9660 ccagcctcat gcaggtactg ctccagcgtc tgccacacac gcgcagccgg cgttaagaat 9720 caacagccgg ctccccgtag actccaaccc aaatgcccgc actcctggaa cgtataatgc 9780 tggtaactga cagcccaacg gcggcttgtc gttgctcccc gacccgccga tggcaaaact 9840 gggagcagcc agatatgtgt cgcaggatgc gcgtatagta ggtacggtcg agtgtaccac 9900 tcctgttcct acaaccgaca cttccgctac aagcggtagt gcttcggcct catcgggtga 9960 agatggtgta gcccacactc ccgatcacgg cagcttcagc gctgtcgtca atgcatatac 10020 cccaaggtta ggaactcaag gagcgacctg tcttgaaggc ggctccccga gttttaacac 10080 agctcgagca gcttgcacac gcgacagctt cagcgctgtc gtcagtaaat ttaccccaag 10140 gttaggaact caaggagcga cctgtcttga aggcggctcc ccgagtttta acacagctcg 10200 agcagcttgc acaacccacg attacaccac gttgccgccc gcaaactagc ctgaaccatt 10260 acgtgttggc tacacgaatg caagggtcgg tttgagatgc gggtacggaa ggtcgggatt 10320 gtcgagcatg cccaagaggt ccgctcagac gtcctcgtgg aagaccgtta agacacctac 10380 gttgtcgaca atacattaag tgtcgccggg tttagccacc tcgagcgatg ctttggacat 10440 gtccactacg tacgggtcat cgacagcctg cggcgataca gccgatggaa ctcgagacgg 10500 taataaaagt cactcgccgc acggtgaagc gagtatgacc gattgcgttg aaagaaatac 10560 gcgtcgattt cccgtggttt gcgattcgcg gagtaccaaa actgagcggt ccccaaccgc 10620 gaccacggag gtgctgacac caccgtattc ggaggacgct ccgattgcgc ccctcgctga 10680 acaaacagcg aaaaactcgc gaccctcgtc aagggaggtc cgtcatgtct ccaacgtgat 10740 ggattctagc gaaagcacta cagactatac acccccaccg ggttgcgctg ttggtagagt 10800 agaggacttg gggaaacaga catccccctc ctccgctaaa gctggtattc gtatctaccc 10860 tcctcctccg accgacgcca ggtgttcacc accagcgttt gatccgagca aggagtactg 10920 cacacctgac atggtgttgt tcgggcaagc cccgtcggtt ttctcgcaat ggacgccctc 10980 catctttact gtagatggtg tggaatactc ttgtggagaa caattcttcg cggctgccaa 11040 ggctcgtctc tttggcgacc aagatacgtt gcggcggatt atgcgtgttt cgggcccgat 11100 taaacataag cgttacggac gccaagttaa agggtttgac gaagctgttt gggagcgcga 11160 gcgtgaaaac gtggtgcgtg tcgcctccta ctacaatttt tcgcaaaatc ccgctatgcg 11220 acaacatctt ttgggcaccg gcgacaaaat gctcgtcgaa gctagcccat tcgatgccat 11280 atggggcatt ggacatcgcg cggatgatcc tgctgcaatc caaccctctt tatggcgggg 11340 ctccaatctg cttggcaaaa gcctgcaggt tgttcgagac ctactccgag agcacgcgcc 11400 gacgccgaca cttccaccac aagtttcgtc cgacgctcag ctccggaata caatacatga 11460 ggttaaccct gcaacgcaag agcgtatttc aacggctgcc gccgaggagg ccgccccgtc 11520 gtcaggttac cgcataaaat cagcgcatgt tccaagggat cacagcgctg aagttctcgc 11580 ggttacgtcc gctgagtata atgaggaaga tcgtgtaccg ttgctcgctg agcatggtcc 11640 ttgcctcgta ggtggtgttg ttacagttga cgacgcttca tttacgactc gagtcaaaat 11700 ccacgctggg ccagccaaat cacaatatgg ttgcgccgct ctgctcgatt caggatcacc 11760 ggccacgttc atcaacagca acgctgtcgg taccctcaaa gccatgggag ccatctcaga 11820 ggcttgcatc tcgcacggta actcacgttc ttggggaggt tttggtaaat ccgagtctct 11880 tcagacgtct gatacagtcc gtctgagtgt gcaatttttc cacggtgata cgccttcggc 11940 ttctcttgcc gtttgggcgc acatcgtccc tgcaaacacc atgcaatttc ccatcctatt 12000 gggacgcgat agtttcatgc gatttaacac tcgcacgtac cgtatgttgc ctccgaggcc 12060 actggacaat cgcgtttttg gtgaatatac gcttgcccac caggatgatt ctggtgcggt 12120 cgcgtatgtg cccgatttca cagccccggc ggaccaattc cagctccgtt atgcagggcc 12180 aacgggtact tcattgtcag acgaccacca aatgattgaa gtcaacttgg tgcgttccaa 12240 cggtacaccg gctctgaccg gtcaatacct tgtcgacatg ttgcctgatg tttcgtcgaa 12300 cgaagagatc tttgtctccg acggacgtca gtttgtgccg ctcgcgggcg ctgcagaact 12360 tgagccagga gacttgctcg gtactgctgc cgccccgctg atgcgcgtcc cggtagagca 12420 tttagaacaa cagtttagtg acgaagctga cacttcatgt tcggtgcctg gacctatttt 12480 gggttctacc gaggataacg cggacaggac cgtcgatccg caggtgcgtt gccacgatcc 12540 cttcgtgcac aacctacgat ccaccgatct tcctgtgccg gacccaggga aatcaccccc 12600 tgcggcccct gccccccgct cacacttcgc cctcgccgcc accacagcat gtgatggagc 12660 ggttgagcgc tgatcagaga gttagctttg agtcattgtg gaatcgcttg ccgcctcacc 12720 tgaagttggt taagtttgat ttacacggtc ctggttggtc accagaggtc atcacagaac 12780 ttggtgatct tttgcatgat ttccaagacg tgttttccac atcctcgacg gatttagggt 12840 cctgttccct gatgccgttt gagatcaaag tacctccgga ttgtcccccg gtgacgtcca 12900 aaccgtaccg tatgaatcct ttggttgcga agcaagtcga tgccattttg gaccagtatc 12960 tagctgctgg cctaattcag cactcgacct ctccttattc cagccccatc gtggttatac 13020 caaagaagtc tggtggaata cgcatcacgg ttaactacag aaagttgaac catatcagca 13080 gctttggtca acttcccatc ccccgagtcg acgagattct agcgaaactc aacagaggtt 13140 cgattttctc gctattcgat ttcacgggtt ctttccacca gatcactgtc cacaaggaca 13200 ctgtccccct tacggctttt gcgaccccca ctcgtttgtt cgaatggctc cgcatgccga 13260 tgggtgctag ccaatccgca ggccactttg tgaaagtgat taacgaagta atcaaaggac 13320 tcgatggagt cgaggcatac ctcgatgacg tcgttgtttt tgacgaaggc ccatggcagc 13380 atgtccgtaa tatgcgcacg ctcttcgaac ggttgagaaa gtacgacctc aaactttctc 13440 cctcgaaagc caccatcggt accaccaagg ctgacttctt ggggcacacc atatcttcga 13500 aaggtgtcct ccccaacgcc cgtaaagtag ccgccctggc aggtatgccc atgcctacga 13560 ccgtcaagca actcaggtca ctcatgggtg gtctgagcta ctaccgacgt ttcctcagag 13620 acatggccaa gcgtgtgaag tccattacgc acttgctcaa aaaaggtgtt cccttcgctt 13680 tcacgagcga catggaaaca actgttcgca gcctactggc tgagctcgcg aaaccgccca 13740 ttttagtgtt tcctgattgg gacgctatcg cggacggtac acgcccttta cgtctttgct 13800 gtgacgccag ctccgacggt ctcggcgccg cgctggagca agagcagaaa gacggctcgg 13860 tacggccgat cgttttcatc agcagagcca cgctcgacgc tgaacgcaac tggaccgctc 13920 tcgatctcga agcaggagcc gttgtatggg cgatcaagcg tctccgcgaa taccttcgtg 13980 gcacacactt ccgcatctat tccgacaata aggctctgga aagtttgtca aaaatcagcg 14040 agcacaaccc acgcgtccaa cgctggattg agctccgtga agcatacagc tacacgttgg 14100 agtaccgacg aggtgcctcc aacggaaacg ctgacatgct gtctcgtctg ccgattgagc 14160 ctactgccgc cgacatcaac ggtaacagtc gtttgacgtc cccagaagac gttggtgtgt 14220 atctgatccg agcgacaggt cacgcaccac ccggacaaac cacgcctggc gttggtttgg 14280 gtgggctggc gcccccgagc gagaacgccg ctttgggtgg gctacccctc acttccgatg 14340 attttgcgga ttttcgcaaa cacgggcctc gaatgaggat tgacgaccta gatgctcctg 14400 caggagaatt cgtcgctcgt gtttttccgt acgtcaatgc gcgaggacct ttgcgacacc 14460 ttgcggacga tcgtgcattg tcttgcaccg accactccgt atttgctgtg cctgaggtta 14520 cttccgctgc aacccagaaa atacagggcg ctgtgccggc actccggtct tcagcttctc 14580 ctgttgtgtc tccgatgaga ccattgtata gggacaccgc cacggtttac ggaccgtctg 14640 cgcgacccca cacggataca gctgcatttg cgctccctgt ccacgacaca cagaccgccg 14700 acgataactc tcggttgccc cctgtcgtgt ctcctgcgac cgcaattgtc gacgccggct 14760 cccactctta tcgtttagat gccgccgact cattgccgcc gccttcgacc tctcggttgc 14820 aaccgcatcg tattgatccg tcggaactga tctctactcg tacgcgtcgc cgaaccgcgg 14880 ctgctgcggg tcagcctcaa cccgatgtaa actacggttt cggtcctgat ttgtcgatcc 14940 ccccacacgt tccgcgtgca ggcgcttctc gtcgtcaaac acgagtgaca cccgctgcca 15000 ccacgcctga gcctgctgtc gaacctgtcc caacggtgcc cgtagcgccg ccggagacgg 15060 ttaccgacgc ccctacgggt cctctgttgg gtttgtcaca accggctgct gcagctggta 15120 aggcaacgcc cgcagtggat tccatgatcc tcaatcctgc agagttagaa ttccgtgagt 15180 ccgtcgaacg ctacacgcgt gccgattggg cgcgggaaca gcagaaagag ccggtgtgtg 15240 aagccaccat ccgctatatt ctcctcaaac gccctcagag tctacctgtc gatttctttg 15300 ccagagtgtc atatcactcc aggcatagac cctcgttgga ggatattcga gagcttgcag 15360 ataaaggacg cctcgtcact gacgatggcc tttgcctctt ggtacgaaag aataccaagc 15420 ccccggtctc ttctgaccgt cccggaggac gagctgcacg cctgttgaat gacgaaccca 15480 ctcgtattta cgtgcccatg ttaatgcgac cttgggtcat gcaagcttgt catgccaacg 15540 ccctctgcca ccttggtacc gctcgcacgc tcagcttgct tgagaggttt tactggtgga 15600 ttgggatgag tatcagtact cgttggtgga ttcggcgatg tttgaaatgt caggcccgca 15660 aaactgcgcg ccagactatt cgctggccga ttctcacgat ccctctgcct tcggcaccag 15720 gggtcgcgat tagcgtcgac tattttggtc cgcttcccac aactccgcga ggtttctcgt 15780 atattttgct attcactgac cgtttcagtc ggagagccaa tatgtacgca gtgactgacg 15840 ccgagttcac cgctgaaggt acagctgacg tccttgtcaa taaatacatg cctgtttggg 15900 gatgccccct cagcattctt tctgacaacg gattgcagtt atgctccaaa ctgtcggttg 15960 ccatcctaaa attgctacgc gtccgaaaaa ttacgacgag cgcgtaccac cctagcggca 16020 acggaggagt tgagcgcgcg aaccacacca tggcccagat gctggcaatg gttgtgaacg 16080 aaggacaaga tgattgggac attcatctcc ctcatgttga attcgcgtac aacaactccg 16140 ttagcgctgc cacaggattg gcgcccaatg aggtgcatat ggcgcgcctt cccaggtttc 16200 cactgaccgt ttttgacaac atttacgctc gtggtcacca gtcgcttgcc cgcgatcagc 16260 tcgagtattg caaccttgcc gccgatcggc aacggcgctc ctacgagcta gtgcgtgaac 16320 aacacgaact cacagtttcc cgtatggaaa gacggaactc gaaactgtct gatgccttac 16380 acaaactacc cgtttacgct accggtggtt gggtgtgggt ctacaaccat ttggctacca 16440 tccgccaagg tgccaaactc acttccaagg cccgcgcaga cgctgactcc caggtactca 16500 agaagaagct gtccttgaat tggacaggtt cttttaaaat cctagcaggt ccttttaaaa 16560 tcctagcagt cggtccttgc aacaaggctc ccgatggcag cccgatggct gacaagctcc 16620 tgttcttgga tcttccctcc gatatgcccg gagtggatgc caagcgccga gtttctgtcg 16680 ctcgttgcaa accgtgtgcg aacccgcacg atagtgacga catgcctcgg ttcttgcctg 16740 caggcctcac gcagtatgtt ctcaacaact tcacgacgaa gtctccgccg taccatgtta 16800 ccgcggacga tgtttcggcg cctgtccgca ggctcgaggt tgagaaaatc acgggacacc 16860 agtcggttcg aggacgtggc ggcgttatcg cagtcatgta cgagacctac tggaaaggtc 16920 ttctgcggcc ctcgtgggaa cgagaaatgg acctccaaca ctcccgaaaa cagattcttc 16980 tgtattgggc tggtacaccc gaccaacacc ggcagactaa ccgtctgtat cgtcgcatgc 17040 gcattggcgc agcggaacgt gaactgtctc gcatcaaagg cgagcggtcc tcgtcgcctg 17100 ggtacgaata tgttccccgc gatgtttggg cccgccgttt tcgcaacacc gtgctgcctg 17160 ttggcgcata cttctggtac aaggctcaag acgctctatg gtggctaggg aaaatctccg 17220 gacacactcc aactacaaac gtcttcttcg ttcgcttcct ggaagaccct ggacctgtca 17280 agatcaccct ctctccttcg cgctacacaa cagctttggg agctgtttgt ggttctcggt 17340 gcctccagct gcaccgaagt agtcccttca tgcgaggtat gttgcgcaat gtagacgagt 17400 cgcgtggtac ggctatagat gcctgatagc actgttgccc ttgttttcct tgttttatgt 17460 gtatgtatat gtatgtgtat atgtttgtgt gttacatgtt tgtgtttatg tatgtttgtc 17520 tgtatgtttc tagctcgccc tctcgatcta ttttcgagac tggctattgc ttctgtatgt 17580 ttctagctcg ccctctcgat cggtttttga gactggctat tgcttctgca cgtttctagc 17640 tcgccctctc gaatatttcg ggactggcta ttgctccttt atgctttccg ctcgccctct 17700 caatctctta gagactggct cttgtttttg tgttgcgtac tttctcgccc cgtttgtcac 17760 tgctcggttg gttgccgaaa gttttcgctc ccctttccct atttttcaat gcgacctagg 17820 ttcgtcattt gttgcggtga tacccaaatt tggtgcatcg tttaactccc caccctatgg 17880 tttgctttgc atattttttg gtccaacgtt ccgccagtgc ttctattgca tgccacggcc 17940 aacgtgttcc atcttgatac tttctttagc atttttcttc ctgctattgg ccttgacgtc 18000 ccattaggat tgttttcctc gccccacccc gatcgcacgc acgttgtatc gtgacatgcg 18060 aacgttgttt ttggcgttgg ttcctgtcct tttctttggc cgttgtttac gttccccgga 18120 aaccccctct ttccctactt ttctcgattt tggtcgaccc ctagcggttt tccatgtcgt 18180 ttgatctttt gcaggctcgg ttttcgtttc ttattcttta tgtatacatt tcagcactcg 18240 atcgcatcgt agcccccctt cccgtaaggt tctggcttac ttgattgcgt attcgatcgg 18300 ttcattcgta cgagatcggt tgtgattttc tcttcgcgat ttcgttactt cgtgttacaa 18360 tatggtcttt tcggttcgga tgttttggtt atttttcgca cccacccatg tgccttttcc 18420 cgattttatc cgccgacttt gccgccccgg tttgttctgt gttttcttct ttcttggttc 18480 cgcttatttg gtttggttaa cggagaggtg cgggtgaggg ttttgagtta tcgtatcttc 18540 gatccacccc gcaatcctct tgattgacta gagtccctcc gaggtttgct tctgtatctg 18600 catctacgtc cactcagggt gggctattgt tatggtattt ggaggtagac aggtgatagt 18660 ggttgatcat ggttatttgg cgccgtcgga tgctatgacg tgacgtcatg ctagatcagg 18720 gctttatgcc gagacatgtg cccttctgtt cagtgtgtgc gtacaggcga tctatgatcg 18780 tgtgtgcgtg ggatattgtg agttggcttg gaaagcgtta atcaagagaa agagaacaac 18840 ggaaagcaac aacaacctgc tactgtggtc ggacaagaga gttccacaca gacagctcaa 18900 aggtgattga ttctgaagga aggggtcaaa taccattaca gtttggagta tttgtcgggg 18960 atgaaatatt ttctctgacc ctagttgctt ttattttatc ttatttcgtc tgatttggaa 19020 agtcgcatct tcgatcttta tttgaggttg agtattggat tgacgataaa gtatctgcat 19080 ctacgacttc ccagggtggg ctaa 19104 // ID Gypsy-27_PSo-LTR repbase; DNA; PLN; 949 BP. XX AC . XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 04-APR-2011 (Rel. 16.02, Last updated, Version 2) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PSo_; KW Gypsy-27_PSo-LTR; Gypsy-27_PSo-I. XX NM Gypsy-27_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-949 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR [1] (Consensus) XX SQ Sequence 949 BP; 216 A; 213 C; 270 G; 249 T; 1 other; tgtggtatcg gaaaatggag attaccggag cgattgcccg tcgcccaaga atcaaggtac 60 aatgatcaag gagcagtcaa gcgcgagatg gaagtggctg ctttggttaa gctggcgaca 120 ttatcctcgt tggagtgaca ggtagtggcc ggagcctcgt cgggtcctaa tacaaccccg 180 aacgaggctt catggtaccc acttttaggt acagatgcat ttagttacgt acttcggccg 240 cacttattag tgtagccgcg gtcgtcattt gatgtgtccg gaatcgcctt attgcgatcg 300 ttcacactag atatttgtat agggacatag gactcatcat aggatggcca gaacgaggcc 360 cccagggcct cagaaaactc agtaataaaa agacagtctt cccccaaagc caacaagggt 420 caagtccgac ttcggtaagt gtagctagct tattgtagtg cctggacacg ctcggctgcg 480 tgtggatgcc tgtcggggag cttatcgtgc attgaccgag agtttccttg gcagcgccaa 540 gagttggcgt ggccggagag gcaggaacgg tattagagta tcgttcggta tatatttgtg 600 ggattagagt gtccctgagt gtattagtct acctaccgag gttttacctt ggtccccctg 660 tataaggcct aacacgccgg tacccttcct ttctgaggga ctgcagtggg gttgcgcgaa 720 agcgctacat agtatcctag ccttagctcg tggctagtgg tacaggtttt tgggttgacc 780 gaagataacc taaggtgcac agaggcgctt gcaaccgacc cggtgtaagg gatcgttcct 840 ggtcttcagg ttttgatcca ataagcgctt acctttgcgg gttagcgtgt tgttggtgtc 900 tctaatacct tttggtagag gaggatttta gtggnattac cacaccaca 949 // ID Gypsy5-LTR_VC repbase; DNA; PLN; 450 BP. XX AC scaffold_101; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5-VC; KW Gypsy5-I_VC; Gypsy5-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-450 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 133-133 (2008). XX DR Genome; scaffold_101; Positions 196978 197427. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 450 BP; 103 A; 119 C; 105 G; 123 T; 0 other; tgtagcaagc tacatttccc ttagaatatt ttaacgatta cttttaacaa taactgttaa 60 tttgttaaac gatctgactc aagtttcgta catgttccga gtttcgtcac atgtcgcaaa 120 ctgggcagct gttcgtaagc gaatctaacg ggctggggcc ccgggcccca ccaacattat 180 cctagtacgg caaggtccgt agtagagatt atccggcagg taggccgaga tataagctac 240 ccgggcgggg tgttctggcc agacactgac gtatcacatt actaggtgtt cggagttcaa 300 gactccgctg ccgccatctc taaccgttac gtacacgtct tatgtacgct agtgcttgcc 360 gcttggttgg acttcttcct acatcggcga ggactaataa ctccacgctt ccgctctgtc 420 agtcctcccg tcaggtgagc gactgctaca 450 // ID Merlin-1_Psojae repbase; DNA; PLN; 1493 BP. XX AC . XX DT 16-MAY-2011 (Rel. 16.05, Created) DT 16-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Merlin; DNA transposon; Transposable Element; Merlin-1_Psojae. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1493 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 1493 BP; 345 A; 464 C; 409 G; 275 T; 0 other; ggcactccct aagatcagcc cccactacgc tttttgacaa aactttagtc cgacacaaat 60 tacatattaa gtgcacccat gtatcagttt gcgttgcgcg cgtactcgtg tgaacccgag 120 gagcgccccc acttttcgcg cccacggcga tgccgccaca acacaaacac tatcactttc 180 gaaaaagagc ccccgcccca agacacgcaa cgcaccatgg ccccagccaa gaaatcatcc 240 tcgaagacga ctccgcgctc tgcacgcgcg ccacgcaagc gcgcatcacg gtcggagcgc 300 gtgcgcgcat ccagagcgcc gcccaacacc gcgcccaagg agcccgtcgt gtacaactcg 360 ccgtacgcgt acgcggtggc ggatccggcg gtgtccccgt tcacgttcga caacataatg 420 gcggcgacca cgagcgagga caccgccgtg agcttcctaa tgcgtcacgg cctcctcgcc 480 tcctctaaga catgcgagta ctgcgactat cccatgaacc tgtgcgtcta caaacgcggc 540 acggaggacg aggaccgccg ctggcgatgc cgccgtagcg gccacccgga caaggagctc 600 agcctgaaga aaggctcctt cttcgacggc accaagctag cgtaccgcac tgtgctgcgc 660 ctgatgttct tctgggcgtc ggacatcccc gtcggaaccg cggagcagtt cctgggcatc 720 tccgacgtca cggcgatcga ctggtacggc ttctgccgcg acatctgctc cgccgagatg 780 ctgcagtgca gcatgatggt atgtacacct aatattcgac tacaatatgt ggcatatgtg 840 ctaactatgt ttatacagat cggcggcgtg ggccacaccg tcgagatcga cgagacgagc 900 ctaaagaaga agtccaagtt cgggcgcggc aagcagcacg aggactactg gctcttcggc 960 ggtgtcgatc gggccacggg gcggtggttc ggcatcgtca ccggccccga ccgcaaaaag 1020 aagacgctgt ctcctctcat cggcaagcat atcatggccg ggtcgaccat catctccgac 1080 cagttctcct cgtatgtttc tgtcaacggg aagcatacgt tggagaacaa caagtggcta 1140 aagggcaaga actacaccca caagtgggtc aaccacgaca agttcttcgt ggaccccaag 1200 acgggggccc atacgaaccg cattgaaggg acgtgggaag tgcgcgtgaa gcgctacatc 1260 aaggctatgc gcggcgtccc caaggagcgc ctggaccagt acctggacat gtacctgtgg 1320 aagtcctggt acttcaacgg cactgtcccg aagtgccagt accttgacgg cctcgtgcag 1380 ggcatccgca aacactaccc agtttaggtc aagattgtaa ttcacaaatg taaatttgtg 1440 tcggactaaa gttttgtcaa aaagcgtagt gggggctgat cttagggagt gcc 1493 // ID Gypsy-15_PR-I repbase; DNA; PLN; 5237 BP. XX AC AAQX01002972; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PR_; KW Gypsy-15_PR-LTR; Gypsy-15_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5237 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002972; Positions 703 5939. XX CC Positions [3459-3974] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(114..3266,3270..5036) FT /product="Gypsy-15_PR-I_1p" FT /translation="MAISSGSTPLFTPIVPPEIKSISHEALTLWKKERREY FT EAKLRARCRVSGEVYEAVVLPIIESFDPDLLDTFCELRLNLASVDVTEGML FT IAEISNIISNVKNDTLPDIKALFRSQLRMNMTESDVDARVLDYFNHFGIIM FT RENGLMNCFEGSDGTREKCKRLAASLHPATLKSEVKQCLRYTHKPAASNPR FT LLFELIVDKAKEHERQFQRTRKRDTTSGRDNDTQKTSKPKDKKRAWTNKRA FT MATVAENKSKTGAPTAQADHRPQSISSRPPPSPCPKCKEMHWLRECTKATE FT KEKAELRERMREAFAAKKARIKRLGELLPDTERLVTLNGALELPYCADSGS FT DHTVIGRSHWEQLQALDPSVQPEELDIPVRNQTFGSVQVTADKKARLHLLI FT HTAAGPVEPMNAVDVLIVDVDDDEFIIGNDLLMTLGIDVDRQLEQLADRGD FT DETCGDPIELEADDPPVSTATQPSDDDIFTAVECLIARAVENGFPADKVEQ FT LRTIAHAYDVWRLELRADPPAKVPPLEVRLQDGARPTKCKPRKYPPHIRQF FT LREFNTRLVELGLVYENPDSRWSSPVLPVKKSTDLMDLRQTTDYRALNERT FT EVMAAVMPILSLVMEHARGMNHFGLFDFLKGFWQLPLAELCQEYLSYMTDE FT KIFTPRRVPQGCSDAAIYFQKTMETCFASLLYEHLLIWIDDLLLYAKDINT FT YLAKLADLFSLLNEFGLKLSVKKSSLYQTQVTWCGRVIDGQGVRHDPKRIN FT TLRSMPYPHTAGELQQFVCAVNWMRESVVDYARHVAPLQKKLDAALASTKR FT TRRAAAGIDIELDQEERAAFDQVKDMIASSATLDFPDDQATTCLFTDASDV FT GWALIVTQVKDFDPKKPATEQQHRLLNCMSGTFSGSQLNWTVIEKEAFPIV FT IACDKLDYLLLRPQPFRMYCDHRNLIHVFAPHESVKKHVRGKLLRWAMKLM FT NYRYVIEHVPGPDNVWADMISRWAGNHTPTILSHRLKTFRSQTAVVLPTVS FT ALRPLDDDHFVWPTLDELSDEQSRHQPPAPVDRTADGLLLLNQRIVPAAAT FT DLIQRLCVVAHCGAQGHRGQHAMIAHLKRLFSIEHISTIVSNFVKGCLLCL FT HSRGGEIIPRPWSEVIECSTRNGVLHYDYLYMGDSYGNSKYLLVLKDHVSH FT YCELVVADTADSTVVVEALLAWHSRFGIPPVWVSDNGTHFKNEVVAELSRR FT LRTQQTFTPAYSPWVNGSIERVNRDILQVVRAMILSYKISYKDWVYLVPII FT QSNLNHTAVPSLGNRAPVELFTGLQCPTPLSEFYLPNSNELQQVPPSQQID FT SYLTDLRNSLHEMHCKVEDQRLKQRLLNKKRERGENLVNFAVGDFVLRSRV FT DEKNGNKLQVTWIGPYRVIRADSHSFRVQHLVTEDELDVHASRLKFYADSS FT LNVTDELLEHVASQGIILAVNELKEHRWNPDISDYEILVEWKGLQSIEDSY FT EPLQALAKEIRVLVNNYVELADDQQLRGHWQKISGMENSTPQPQLPANSTP FT TPPVSAQHEPRGHQRSRKRRHRATGEHPSDVSQRDASVGRATEVLLPHEQL FT SVRRTPDEDSQEHKSAEGHDFQLPLGRRTRSMTKAATIQRATDQAPTLSSP FT CARRQLRSQRSSKRRKNRVQRD" XX SQ Sequence 5237 BP; 1316 A; 1456 C; 1352 G; 1113 T; 0 other; aagaattctt tagtagaaga attgccactc ttcggtgcaa gtccaactct ctgcgccaag 60 aggacaacta cgactagaag acaactctcc aactccgagc tcaacgaatc acgatggcga 120 tttcatctgg ttcgacccca ctgtttacgc ctatcgtacc gccagagatc aagagcatct 180 cccacgaggc gctcacactg tggaaaaagg agcgacgcga gtacgaggcc aagctgcgcg 240 cacgttgccg cgtgagtggc gaagtgtacg aggctgtggt tctgcctatc atcgagtcat 300 ttgaccccga cctgctagac acgttttgcg aacttcggct caacctggca tcggtggatg 360 tgactgaagg catgctgatc gccgagatca gcaacatcat ttcaaacgtg aagaacgaca 420 cgttgcccga catcaaggct ctctttagaa gccaactccg gatgaacatg acggagagcg 480 acgtcgatgc acgcgttctc gactacttca accatttcgg catcatcatg cgcgagaatg 540 gcttgatgaa ctgttttgag ggcagtgacg ggaccaggga gaagtgcaag cgcctagctg 600 cctctctcca tccggcgact ttgaaatctg aggtgaagca atgtctacgc tacacccaca 660 agccggcagc atccaatcca aggctgttgt tcgagctgat cgtcgacaag gcgaaagaac 720 atgagcgcca gttccaacga accaggaagc gcgacactac ttctggacgt gacaacgaca 780 cccagaagac atcgaagccc aaggacaaga agcgggcttg gaccaacaaa cgtgcgatgg 840 ctacggtggc ggagaacaag tccaagaccg gtgctccgac tgcacaggct gatcataggc 900 cgcagtcgat ctcgagtagg ccaccaccca gtccgtgccc caagtgcaag gaaatgcatt 960 ggcttcgtga atgcaccaag gcgacggaaa aggagaaagc tgagctacgt gaacgcatgc 1020 gagaggcttt cgccgcgaaa aaggcccgta ttaagcgact cggcgaattg ctacccgaca 1080 ccgaacgcct ggtgacgctg aatggagctt tggagctccc atactgtgct gacagtggct 1140 cagatcacac agtgattggc cgctctcact gggaacagct ccaagctttg gacccaagcg 1200 tccaacccga agaacttgac atccctgtac ggaaccagac tttcggttct gtgcaagtga 1260 ctgccgacaa gaaggcaaga ctccacctat tgattcacac cgcagcggga cccgttgaac 1320 cgatgaacgc tgtggatgtt ttgattgttg acgtggatga tgatgagttt attataggga 1380 atgacttact aatgacactt ggaattgacg tggaccgaca actcgagcaa ctcgctgatc 1440 gaggtgacga cgaaacgtgt ggcgacccga tcgaactcga agctgatgac ccaccggtgt 1500 cgacggccac gcaaccaagt gatgatgaca tttttactgc ggtggaatgc ctgattgccc 1560 gtgctgtgga gaatgggttc cctgccgata aggtcgaaca actccgcacc attgctcacg 1620 cctatgatgt gtggcgactg gaattacgag cggacccgcc agctaaagtt ccaccactcg 1680 aagtgcgtct gcaggatggg gctcgcccaa ccaagtgtaa gccccgcaaa tatccgccgc 1740 acattcgcca attcctccga gaatttaaca ctcgtcttgt ggaattagga ttggtctatg 1800 agaaccctga cagtcgttgg tcgagccccg tccttccggt aaagaagtcg acggacctga 1860 tggaccttcg tcaaacaacg gattatcgtg ctctcaacga gcggactgaa gttatggctg 1920 cggtaatgcc gatattatcg ttggtcatgg aacatgcacg tggaatgaat cattttggac 1980 ttttcgattt tctcaagggt ttctggcagt tgccactcgc tgaactttgt caggaatacc 2040 tttcgtacat gacggacgag aagattttca ctcctcgccg tgtacctcaa ggttgcagcg 2100 atgctgcaat ctacttccag aaaacaatgg agacatgttt cgctagcctt ctctacgaac 2160 acctcctgat ctggatagac gacctgcttc tatatgcgaa agacatcaac acttacctcg 2220 ccaagctggc tgaccttttc tcgctactca acgaatttgg gctcaaattg agtgtgaaga 2280 aatccagttt gtaccagacc caagtcacat ggtgcggtcg ggtgatcgat ggtcaaggag 2340 ttcgacatga cccaaaacgt atcaacacgt tacggtcaat gccatacccc catacagcag 2400 gtgaattaca acaattcgta tgtgccgtta actggatgcg cgaatccgtc gtcgactatg 2460 cccgccacgt cgctcctctg cagaaaaaac tcgacgccgc tctggccagc accaagcgaa 2520 ctcgccgggc tgcagcaggg atcgacatcg agctcgatca ggaagaacgt gcggctttcg 2580 atcaagtcaa agatatgatt gcctcgtcgg ccactctcga ttttcctgac gaccaggcca 2640 ctacgtgtct atttacagat gcgtccgatg tgggctgggc tctaattgtg acccaggtga 2700 aggacttcga tccgaagaag cccgccaccg agcagcaaca ccgacttctc aactgcatga 2760 gcgggacttt ctcaggcagt caactcaact ggaccgtcat tgagaaagaa gctttcccaa 2820 ttgtcatcgc atgtgataag ctcgactacc tactcctacg gcctcagcca tttcgaatgt 2880 actgtgacca ccgcaacctg atccatgtct tcgcacctca tgagagtgtg aagaagcatg 2940 tgcggggaaa gctgctccgt tgggccatga agctgatgaa ctatcgttac gtgatcgaac 3000 acgttcctgg accagacaac gtatgggccg acatgatttc tcgttgggca ggaaatcata 3060 cacctaccat actttctcac cgattgaaaa ctttccgcag ccaaactgcg gtagttttgc 3120 cgaccgtgtc tgcgttgcgg cctttggatg acgaccattt cgtctggccg acgctcgacg 3180 aactatcgga cgaacaatct cgccatcagc ctccggcccc tgttgatcgg actgctgacg 3240 gactactttt acttaaccaa cggatttgag tacccgccgc ggctacggac ctgatccaac 3300 gcttgtgcgt cgtggcgcat tgtggtgctc aaggccaccg cggtcagcat gcaatgattg 3360 cccacctcaa gcgacttttc tccatcgaac acatctccac catcgtgtcg aacttcgtca 3420 aaggatgcct gctgtgtctg cattctcgag ggggggaaat tatccccaga ccgtggagtg 3480 aagtaattga gtgcagcacg cgcaatggtg ttttgcatta cgactactta tacatgggcg 3540 acagctacgg aaacagcaag taccttctcg ttttgaaaga ccacgtgagc cattactgcg 3600 agctggttgt ggccgacaca gccgacagca cagtggtggt cgaagcttta ctggcctggc 3660 attcccggtt cggaatccca ccagtatggg tctccgacaa cggcacccat ttcaagaatg 3720 aagtggtcgc cgagctgagt cgccgcctac gcacccagca aacgttcacg cctgcgtaca 3780 gcccgtgggt gaacgggtcg attgaacgag tgaatcgcga tatcctacaa gtggtgagag 3840 caatgatttt gtcctacaag atcagctaca aggattgggt atatctggtg ccgatcatcc 3900 agtccaacct gaatcatacg gccgtgccct ccttaggcaa tcgagcacct gtggaactgt 3960 ttactggtct gcagtgcccc acgcctctct ccgaatttta cttgcctaac agcaatgagc 4020 tacagcaagt tccacccagt cagcagatcg acagctacct gaccgacctc cgaaacagtc 4080 tgcatgagat gcactgtaag gtcgaggacc agcgcctcaa acagcgactg ctaaacaaga 4140 aacgagaacg aggcgagaac ctcgtaaatt ttgcagtggg tgactttgtc ttacgttccc 4200 gagtcgacga gaagaacgga aacaaactcc aagtgacctg gattggtccc tatcgagtga 4260 tccgtgccga ctcccattct ttccgagtgc agcatctcgt gactgaagat gaactcgatg 4320 tgcacgcatc caggctcaag ttctacgcag acagcagcct gaacgtaacg gacgaactct 4380 tggagcatgt ggcgtcgcag ggtatcatac tcgccgtcaa cgagctcaag gagcaccggt 4440 ggaatccgga catcagcgac tacgagatcc tggtagagtg gaagggccta cagtcgattg 4500 aagactcgta cgaaccccta caagccctag ccaaggagat ccgagtgttg gtgaacaact 4560 acgtggaact cgctgacgac cagcagctcc gtggacattg gcagaagatt agcgggatgg 4620 agaacagcac tccacagccg caactgcctg caaattccac acctacgcct cctgtttcgg 4680 cgcaacatga gcctcggggc catcagcgca gcaggaagag acgacatcgc gctacaggag 4740 aacaccccag tgatgtatct cagcgcgatg cctcagttgg tcgtgccacg gaagtcctac 4800 ttccgcacga gcagctctca gtgcgacgaa ccccggatga ggacagccag gagcacaaaa 4860 gtgccgaagg tcacgacttt cagctgcctc taggtcgacg tactcgatcg atgactaaag 4920 ccgccacgat tcaaagagca acggaccaag cgcctactct ttcgtctccg tgtgcccgcc 4980 gtcagcttcg atctcaacgg tccagcaaac gccgcaagaa ccgcgtccag cgtgattaag 5040 tctgactgcc caatggccag attactccaa tgagcacctg gtattcgtcg gtgaccgagc 5100 gctgttgcga ccttcacacc aactgtagcg gcacaagttc acctccagca ccatccgata 5160 attaaatcga gatggtgact ctgcgagacg tggaagtgat gcagtggtgg tgaaaccaag 5220 cttcgagggc gctgtag 5237 // ID Gypsy-5_ES-I repbase; DNA; PLN; 8747 BP. XX AC CABU01005014; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_ES_; KW Gypsy-5_ES-LTR; Gypsy-5_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-8747 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005014; Positions 54145 62891. XX CC Positions [5906-6391] - Integrase core CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 668..2545 FT /product="Gypsy-5_ES-I_2p" FT /translation="MALRRGYTARSPEPHSASSCDTGNAPHTSNVLGPQQV FT APAAGPKADTGSATLSTIFEPVHGSSSSQDVQRPPQNHAAATASSTVLTQS FT STRTREGADPTLSEGRFGQNPAKRMGSSRPPSGWTRPEPPAFTRLNRLLPG FT TSTPSDDDTRSQRTSDCPPLDSATITAPSTEPRQYRHFPQSSRNHRQPHDT FT AFDATREYVNNNVILFWQPPSIFSQWTPSTFSVDGVEYSCAEQFFAASKAR FT HFGDKSMIHNIMLSSDPTMHKRYGRQVRGFTQQEWKKVGEYIVLVGTFEKL FT SQNLAMRQYLLNTGSSLLAEASPFDNTWGIGMRADHPEAANPSNWTGKNLL FT GKALQSVRDLLRSSAPLPMPPLEDPTDSALDNNGIHEINTDTQQPINPTSK FT SPPEPTGINALWPSDAPPDYDDDILHIAAANFHVDNHPKVLAEHGPGLVDG FT IVTVDEASQSTKLRIHSGSATSGYRCGALLDSGSPATFINSNALSTMRATG FT CATQDCIATNNTRSWGGFGSAQALVTNQMVRFSVQFYHKDQPSFTRRLGSC FT RSSQHHATATSTRTRQLHALYQPHLHRATYAFSNTTRAGRICFLSPPSLRR FT LSLHSRSLCSSRKIPPQIRWKIWNLSLV" FT CDS 3851..7858 FT /product="Gypsy-5_ES-I_3p" FT /translation="MPMPTDLKKIRSLLGGLSYYRSFVKNLSKRVRSVTTL FT LKKNSSFTFTADMEVIVGEILKELSEPRIPVFPDWKAIEDGTRPLRLHCDA FT SLDGLGATLEQEEADGSVRPIVFISKSTLDAERNWTPLDLEAGAIVWAIKR FT LRGYLRGTHFQIWTDNQALENISKVGDHSPRVQRWLEFLTAYQYTLKHRPG FT SSNSNADMLSRLHIPATPQDITGESRITMSDDVDVYMIRATGNTPSGPSPQ FT GIALSGLVPNNGTDTLSGSPLTPANFQDFRRHGLRMSVDDLDAPPGVFAAR FT AFPSVSNNNSRRLRSRHSPALRDINTMHQSVLPRHLDQYNKDPTTVRHPSS FT NRQHHPGTLQSAAQSPAQPASSTMPPATAARSRSDILEAPALQWPLSPSRL FT RPRSLDPSDFISTRTRRRSAATSGNPLPQVTYRFSPDISATEAPAPAAPPR FT RPNTNPSTAELVPTVPTANNTAPSEPPAEPLPESADTPSTGTPSTSASSSL FT PAPLPSPAEISFMDSVARFTHANWHEEQQKDVTCNPAIRYMQLGQPLALPT FT DFYGDTPGHLRPSLTNIKELATKGRIITDDDGNPLLFRQFTKPPNSDNDRP FT SGRAARLLDNEPTRIYVPVHMRPWVMLQCHSNTLCHLGTAKTISLLKQLYW FT WVGMSSCARFWTRQCYTCQGRKSARQTIRWPILTIPLPSGPGVAVSVDYFG FT LLPTTPRGNAYILLFTDRFSRRADMYAVSPAKYTAEGTANIFVNQYIPLWG FT CPVSLLSDNGLHFTSQLSDAIFKLLRVRKITTSAYHPCGNGGVERVNHTMA FT QMLAVSINERQDDWDLHLPHVEFAYSNTVSAATGLAPNQVHIGRFARFPMA FT VFDNIYARGHQSLATDQLEYHNLAVDRQRRAYELNREKHALNVDKIERRNS FT SLSDALHRRPVYKTGHWVWVYNQVSTIRQGASTTASASASDSQVLKAKFAL FT NWTGPFKILAAGPSDKVPDGRPIADKLLYLDLPNDMPGADAKNRVSVIRCK FT PCHHAHDTDIPRFLPAGLTRYVLNNYTNKSPPYHVTADDVSTPLQRLEVEE FT ITGHQTVRGRGGVLAALYHTHWKGLLRPSWEREIDLQHSRHHILRYWCGTP FT DQHSQQNHLYRNMRIGAAARELSRSKGERASSPGYTYVPRDTYTRRFSATA FT IPVGAYFWYKAKDALWWLGKISRHTTTADLYIVRFLDDPGPIKISLAPGHY FT SSEHHAVCGSWCLQVHRNSSFMRGIRRNVDESRGDTTAPTSATTAPASATT FT APPQPLPGENTLLGHRRPPVLVFLFAYIPSPCQQLFPPWCNLPLAGYDPGA FT GLYLVFVFCIFFCVCLFLCYFLRI" XX SQ Sequence 8747 BP; 2026 A; 2984 C; 1840 G; 1897 T; 0 other; actacagcta cggcaatgga aaccacacca actccagcgg caacaacaac gccaatgcct 60 acaacggcca acaacagggt tctcttaccg tttatcaacc ggcccaatct gctgcctcgg 120 cacaatccgt caataccgtc aattctcaag acgcacgcct tcacggcaat cagtcgtcca 180 acgccaccgg caccagaaac ggacgcggat gactccgcaa cggcggtacg ccctccatcc 240 ccgtgccgcc gatagcacca cagggagaac tgcacacttc tgcctccggc acacatgcac 300 ttcgcgcaac acacgacaat tcgacttcgg acacgtcaat aaaacaacgc atgccgataa 360 ccgacactac aatcagccct cgccatcctc gcactgctag caatgcacag cctagtactg 420 ccaacactaa acagggagaa ctgccaccgt ctgccacacg cacacctgca cttcgcgcag 480 cacacgccaa tcacgcctct gctccgtcaa taccctcacc gtcatcgaca accggaatct 540 ccaccggctc tcgcaagagc ggcacttcga ggtcagctcc gcctcgcact accgccacgt 600 atgatacagt tctctcccgc cagctcagtc aaccgccact ccaaggattc gcccccctgg 660 ggagacgatg gctttgaggc gtgggtacac tgcccgatcg ccagaacctc attcggcatc 720 atcatgcgac accggcaacg ctccacatac cagtaatgtc ctaggacctc agcaggtggc 780 tcctgcagcg ggcccaaagg cagacactgg cagtgcaaca ctttcgacaa tttttgaacc 840 ggtgcatgga tcaagctctt cacaagatgt acagcgacct ccacaaaatc acgccgccgc 900 taccgctagt tctactgtat taacccagag ttctacccgt acccgcgaag gcgctgaccc 960 cacactctcc gaaggacgct ttggacagaa ccccgctaaa agaatgggaa gttcgcgccc 1020 cccgtcaggg tggactagac cagagccacc tgcttttact cgactcaatc ggctactacc 1080 aggaacgtct actccaagcg atgacgacac tcggagccag cggacctccg actgtccgcc 1140 acttgattca gcgactataa cagcgccatc aactgagcca cgacaataca ggcactttcc 1200 tcagagctct cggaaccacc gacagcctca cgacactgcc tttgatgcca cacgagagta 1260 cgtcaataat aacgtcattc ttttctggca accgccctcc attttttctc aatggacacc 1320 ttcgacattt tcggtcgatg gagtggaata ctcctgtgcc gaacaattct tcgcagcatc 1380 caaggcacga cacttcggcg acaaaagcat gattcacaac atcatgcttt cttcagaccc 1440 aacaatgcac aagcgctacg gacgacaagt gcgtggcttc acgcaacagg aatggaaaaa 1500 ggtgggagaa tacatcgtgc ttgtgggcac tttcgagaaa ctctcccaaa atcttgccat 1560 gcgtcaatat cttctcaaca caggcagcag cctcctagcc gaagccagcc ctttcgacaa 1620 tacatggggc atcggcatga gagccgatca ccccgaggca gccaacccct ccaactggac 1680 aggcaaaaat ttacttggta aggcacttca atcggttaga gacttgcttc gctcctctgc 1740 accactaccg atgccgccac tggaagaccc caccgactcc gcactcgaca ataacggcat 1800 tcacgagatc aacaccgaca ctcagcaacc gatcaatcca acttcaaagt cacctccaga 1860 gccaacaggt atcaacgctc tgtggccctc tgatgcgcct cccgactacg acgacgacat 1920 tctccacatt gcggccgcca atttccacgt cgacaatcac cccaaagtac ttgctgaaca 1980 tggaccaggt ctcgttgacg gtattgtaac cgttgacgaa gcttcacaat ccaccaaact 2040 gcgcatacac tcaggttccg caacttcagg ttaccgctgc ggcgctctcc tggactccgg 2100 ctctccagcc acgttcatca acagtaatgc tctcagcacc atgcgagcca caggatgcgc 2160 gacacaagac tgcatcgcca ctaacaacac tcgctcttgg ggaggattcg gtagcgctca 2220 agcactcgtc actaatcaga tggtacgttt cagtgttcaa ttttatcaca aggaccaacc 2280 cagcttcact cgccgtctgg gctcatgtag gtccagccaa caccatgcga cagccacttc 2340 tactaggacg cgacagcttc atgcgctata ccaaccgcac ctacaccgtg ctacctacgc 2400 cttctccaac acaacgcgtg ctgggagaat atgctttctc tcaccaccaa gcctgcggcg 2460 cctcagccta cattccagat ccctctgcag ctccaggaag attccacctc aaatacgctg 2520 gaaaatctgg aatctctctc tcgtctaatc accatttggt cgaagtcaac ctcgtccgcg 2580 ccaatggata tcctgctctg gaaggacact acatagtaga tacatattgc agatttgtcc 2640 ccttcaggcg aactcttcgt ctctcacggc cgccaatttc tacctctcgc aggatgcgca 2700 gagcttgaac cgggcgacat attaggtaca gcagccgccc ctcttatgcg tgtatttatc 2760 gacactattc aacaatttag cgacaggcag cagtcaaagc acttccaagt gccagggcca 2820 acacactctg ccgatgcggc acgctgtgat gaccccttca tcggcaacgt atctaccggc 2880 aataacgggg gacctgcaca gcactcctct ccccctccca acaatccgtc tccaccgaca 2940 cttcctccac aggagcttct ggaccgctta gatgccgctc aacagaaaag cttcctatct 3000 ctttgggacc gcctaccacc gcacatgcga gccattacgt tcaatctaca cggcgaaggc 3060 tggacgcctg ccgtcataga tgagctcgct gatgtcttac acaacttccg ggacgtcttc 3120 tccacttcac caacggacct gggctgctgc ccgctgctac cgttcaaaat cgacattccg 3180 gacggcaccc caccggtgcg aaccaagcct taccgcatga accctctggt cgccaaacaa 3240 gtggacgcca ttttggacaa atacctcgcg gcaggtttaa tccaacactc cacttctccg 3300 tactgcagcc ccatcgtcgt cattcccaag aaatctggtg ggcttcgcat caccgtcaac 3360 taccagaaac tcaaccgcat cagcagcttc agtaacgcac ctgttcctcg tgtggatgag 3420 atcatgaaca aactgcacca gggctccatc ttctcgctct tcgacttcac gggctccttc 3480 caccaaattc ccgtgcaccc cgacacaatt ccgctcactg cgttcgccac accgacttcg 3540 ccttttcgag tggctcaaaa tgccgatggg tgccagccaa tcttcaggct ggtggatgaa 3600 ggtcatcaat gaggtcatca aaaacctcga aggcgtcgac gcgtacctcg acgacgtggt 3660 gttccacgac aaaacaccgg cggatcacat ccgcaccatg cccgccttct tgcaacggct 3720 gcgtaagcac aagcttaagc tttcaccgcc caaagcaacc atcggcacga cacactctgc 3780 attcttgtga cacaccatta cccccgacgg cattaggccc aacgccaaca aagtcgctgt 3840 actcgcagct atgccaatgc caaccgacct caagaaaatt cgctcccttc tcggtggtct 3900 gagctactac cgcagcttcg tcaaaaacct gtctaaacga gtacgctccg tcacgacgct 3960 tctcaagaaa aactcttcct tcaccttcac cgccgacatg gaagtcatcg tcggagaaat 4020 ccttaaagaa ctctccgaac cgcgaattcc cgtcttccct gactggaagg ccatcgaaga 4080 cggcaccaga cctctccgcc tccactgcga cgcaagcctc gatggtctgg gtgcgacact 4140 agaacaagaa gaagcggatg gctctgttcg tcccatcgtc ttcatcagca aatcgacact 4200 tgacgctgag cgcaactgga caccactcga cttggaagct ggcgccatcg tttgggccat 4260 caaacgcttg cgtggatact tgcgcggcac acacttccaa atttggaccg acaatcaggc 4320 actggagaac atctccaagg tgggagacca cagcccacgc gtgcagcgtt ggcttgagtt 4380 cctcacagcg tatcaataca cgctcaaaca ccgcccgggc tcctccaaca gcaacgccga 4440 catgctgtct agactacaca tacccgccac tccgcaggac atcacaggag agagccgcat 4500 caccatgtca gatgatgtgg atgtctacat gatccgcgcc accggcaaca ctccttctgg 4560 tccttctcca cagggtattg ctttgagtgg gctagtaccc aacaacggca ccgacacttt 4620 gagtggctcc ccactgacac cagcgaattt ccaggatttt cgccggcacg ggctccgcat 4680 gagcgttgac gacctcgacg ctcctcccgg agtattcgca gctcgtgctt ttccgtcagt 4740 ctccaacaac aattcacgtc gtctccgctc tcgccactct cctgcgttgc gcgacatcaa 4800 cacaatgcat caatcggttt tgcctcgaca tctggaccaa tataataagg accctaccac 4860 agtacgtcac ccgtcctcaa atcgtcaaca ccatcccggc acactacagt ctgccgctca 4920 atctccggca caacctgcca gttcgacaat gccccctgca actgcagctc gctccaggtc 4980 agacatcctg gaagcacctg cacttcagtg gcctctctct ccttctcggt tgcgcccgcg 5040 gtctttggat ccatcagatt tcatatccac ccgcactcga cgccgctcag ctgcaacatc 5100 ggggaatcct ctgcctcaag taacttaccg cttcagccca gacatttccg ccactgaggc 5160 accagcacct gctgcaccgc cacgcaggcc gaacacaaac ccttccaccg ctgaacttgt 5220 gcccaccgta ccaaccgcca ataacactgc tccctcagaa cctcccgcag aacctctgcc 5280 ggaatctgca gacacaccat ccacagggac cccctccact tcagcttctt cgtcacttcc 5340 agcgccacta ccttctccgg ctgagatatc cttcatggac tctgtagcgc gcttcacaca 5400 cgccaactgg catgaggaac aacaaaagga cgtcacttgc aaccccgcca ttcgctacat 5460 gcaacttggg caacctttgg cattgcccac agacttttac ggcgacaccc caggacactt 5520 gcgtccttcc ctcaccaaca tcaaggaatt ggccaccaaa ggtcgcatca tcaccgatga 5580 cgacggcaat ccgctcttgt ttcgacaatt taccaaaccg ccaaactccg acaacgatcg 5640 tcctagcggt agagctgctc gccttctcga caatgaaccc acgcgcatct atgtgccagt 5700 acacatgcgc ccttgggtaa tgcttcaatg ccactccaac actctgtgcc accttggcac 5760 cgccaaaacc atcagccttc tgaaacaact ctactggtgg gttggcatga gctcttgcgc 5820 ccgcttctgg actcgacaat gctacacatg ccaaggccgc aaatcagcac gacaaactat 5880 acgatggccc atcctcacca ttcccctgcc atcagggcca ggtgtggccg tcagcgtgga 5940 ctactttgga ctgctcccta ctactccacg cggcaacgcc tacatcttac tcttcaccga 6000 ccgctttagc aggcgcgccg acatgtacgc agtctcccct gcgaaataca cggccgaagg 6060 gaccgccaat atcttcgtca atcaatacat tccactctgg ggatgtccgg tgagccttct 6120 ttccgacaat ggtctccact tcacctcgca gctttctgac gccatcttca aacttctccg 6180 cgtacgcaaa atcaccacca gcgcctatca cccttgcggc aacggcggcg tggaacgcgt 6240 caaccacaca atggctcaaa tgctagctgt atccatcaat gagaggcaag atgactggga 6300 tctacacctc ccgcatgtgg aatttgccta cagcaacacc gtgagcgccg ccacagggct 6360 agcacccaat caagttcaca tcggccgatt cgcccgcttc cccatggccg ttttcgacaa 6420 tatctacgct cgcggacacc aaagcctggc tacggatcaa cttgaatacc acaacctcgc 6480 tgtggacaga caacgtcgcg cttacgaact caatcgagag aaacacgcgc tcaacgtcga 6540 caaaattgag cgcaggaatt cgtcactatc ggatgcactt caccgacgac ccgtctacaa 6600 gacaggacac tgggtctggg tctacaatca ggtatcgaca attcgccaag gagcttccac 6660 caccgcctct gcctccgcct cggactcgca ggttctcaaa gccaagttcg ccttaaactg 6720 gactgggccc ttcaaaattc ttgccgcggg ccccagcgac aaagtaccag atgggcgtcc 6780 gatcgccgac aaactcctct acttggacct gcccaacgac atgcccggcg ccgacgccaa 6840 aaaccgcgtc tccgtaatac gctgcaagcc gtgccaccac gcccacgaca ctgacatacc 6900 ccgcttcctg cctgctggcc ttacaagata cgtcctcaac aattacacca acaaatcccc 6960 tccgtaccac gtcaccgcgg atgacgtctc cacgcccctt caacgccttg aagtagagga 7020 aatcacaggc caccaaactg tccgcggacg cggcggcgta ctcgccgctc tctaccacac 7080 acactggaaa ggcctgcttc ggccctcctg ggaacgagaa atcgacctac aacactcgcg 7140 tcaccacatc cttcgctact ggtgtggcac accggatcag cacagccaac aaaaccatct 7200 gtaccgcaac atgcgcatag gagccgctgc tcgagaactc tcccgctcca aaggagaacg 7260 tgcgtcttca cctggctaca cctacgtgcc ccgcgacacc tacacccgcc gcttcagcgc 7320 caccgccata cccgtaggag cttacttctg gtacaaagcc aaagacgcgc tctggtggtt 7380 gggcaaaata tcgcggcaca ccaccactgc tgacctctac atcgtccgct tccttgacga 7440 ccccgggccg atcaagatct ccctcgcccc cggccactac agctccgaac atcacgccgt 7500 ctgcggttcc tggtgtctgc aagtacatcg caacagctcc ttcatgcgtg gcatccggag 7560 gaacgtcgac gaatccagag gagacacaac agctccaact tcggccacaa cggcgcccgc 7620 ttcagcaaca acagcgccgc ctcagccact gcccggtgaa aataccttgt tgggacaccg 7680 gcgaccgcct gttcttgttt tcttgtttgc atacattccc tcgccatgtc agcagctctt 7740 tccaccatgg tgcaacctgc ccctggctgg ttacgaccct ggcgctggtt tgtaccttgt 7800 atttgtcttt tgtatatttt tttgtgtttg tttgtttttg tgttacttct tgcgcatctg 7860 acgctataga cttagttctt tttggacacc gttgccaccg aaacccctcg ctcttacagc 7920 cgtctgctgg cgtgataagg tttggcctac gctcttgtgt ttggcgctcg accatgctgc 7980 ctactttcct ctgtagccgt acagtgtttt tcttccgcta ccttttgagc tcctgcgagc 8040 acgtactatt gttgctctcc cgcagctcgt gtcttctact gtcgaccccc gtagcctacg 8100 acatcgacac ccctgttttg agctttcgag agtgatattg atcttgggcc tggtccacta 8160 tatttccatt tcttatattt cagcgtccac tccgacagcc gccgtctgtt tgtcgcaccc 8220 ccccatttta ttggaccgcg cgcggagtac cgtacttact ggctctcggt ttctagcccg 8280 ctcccgctgc gccgctgtct ctgactattt ttgcttcttc tgcatttgta ttaatttgag 8340 catttttctt gtgcttttct tgcgtatccg gaactatcct ggcgtcacac cgtcgttctt 8400 cgtgaccccc ttgcaatcga tagacccccc ggctttttct tctctcttta tctgcttgct 8460 tatgtagctc tgcccctgtt ttatctttgg aagttttccg cacttctttg ctcagctttc 8520 atagccactg tcagcctgca cgctgcttgc cccagttttc ccttatttca attctgccct 8580 tttgctagcc gagagcgtag ctctcttgaa attcacgtag aggtgtggga gaggtttgtg 8640 aggctccgta tcctcgagtc tagagtagat gcttcagatg gattgttatt tcccctcttc 8700 aggttctagc ctctgcgtat atgtcccctc agggtgggct agtggta 8747 // ID Gypsy-14_PR-LTR repbase; DNA; PLN; 389 BP. XX AC AAQX01001936; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PR_; KW Gypsy-14_PR-I; Gypsy-14_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-389 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001936; Positions 3425 3813. XX SQ Sequence 389 BP; 102 A; 87 C; 88 G; 112 T; 0 other; tgtaacgggg ttacacgtac ccgttagtgt atcgtacacg aatagtgtgt ttcacacact 60 tggtgtgcac acccaagttg gtgtgtgtac acgagactta ggatggcggc ctcacagcta 120 cccgtcatgc atattactag gctctactat ggtagatagt gagtgttata cattgcggcc 180 ttgccgcgaa caacaataat acaaatcagt tcacgttttg aagtctagtg tctattaacc 240 ttatttaagg tattaataag tctaggagtc tgtagatcgc atatctacag actgtacttg 300 gttctggtat agaacctagg tttacaaccg aactaagact ctgagagtct acgtcttcct 360 ctgacgcaag ctacggcagc cccgctgca 389 // ID Gypsy-27_PIT-LTR repbase; DNA; PLN; 270 BP. XX AC AATU01000368; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PIT_; KW Gypsy-27_PIT-I; Gypsy-27_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-270 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000368; Positions 98139 97870. XX SQ Sequence 270 BP; 89 A; 65 C; 57 G; 59 T; 0 other; tgttgttgct gaacaacaac gcgtaggtgt tgatgaggtt gaactcacca acaccaacac 60 gttactaaag aaattgagaa tcaactgcaa ggtgtaagca cggaatgtgg aacgttatcc 120 aaccgcgtac ctgcagcaac catggaccgt tataccactg cggataacgg tccaccaaac 180 tctaaaagca tacataggag accacctagt acgagctagg agcgagtcaa tatatatcac 240 ttttacattt ccatcggtag cgacactaca 270 // ID Gypsy15-I_VC repbase; DNA; PLN; 5678 BP. XX AC scaffold_97; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy15-VC; KW Gypsy15-LTR_VC; Gypsy15-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5678 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 124-124 (2008). XX DR Genome; scaffold_97; Positions 260666 254989. XX CC 'CTGCC' target site duplication CC LTRs are 97% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2825..4402 FT /product="Gypsy15-I_VC_1p" FT /translation="MCAHATPESIGRKAAMHLIHKGAHALLVHSSVSLNAT FT SVIPPTQDPEVSALLEEYTDVFREIPGIPPVCPVDHTIPLVPDTQPVTCPM FT YQLSPLELDEVKRQVTELLAKGMIRPSMSPFSAPILFVGKKDGSLHMCIDY FT RGLNSMTTKNWYPLPCVDDLLDKLHGSAYFSFIDLQQGYNQIHIAESDIPK FT TAFRTPFGHFEYTVLSFSLVNTPATFQAVIDHMFRPYIDKFVVCYLDDILI FT YSRTKEEHLQHLRLVLDVLWREQLYTKQSKCHWVKSEVEYLGHVVSVEGVR FT MDPKKTAAVHDWPVPTSLLELRKFLGLTNYFHKFIANYSSLAVQLTSLTHK FT GAFSSADVWTAECQASFEAIKRAVANDIVLRFPDYSQPFRVEIISDASLHG FT TGAVLLQNGHPVAFSSKTFSAAEHGYTTGEQELLAVVHALREWRCYLEGRP FT FVVKTDHKPLTFLQGVPTLNRRQAWWLEYMLRFNFTWEHVSGSVNIADALS FT RHPSLHSVVLSVVTRRQSVAADLTISAFAK" XX SQ Sequence 5678 BP; 1223 A; 1465 C; 1451 G; 1539 T; 0 other; agtggtatcg agatgttcgg tctcgaccag ctcttctgca ccaatctcga ttgttagtaa 60 aggtcatagg cttacagtgt tggagcgctc acggcagctc ttcagggtaa gtgaaagatc 120 gtaatcatct gtattgtttt gtcctttgtt gcctcgctca ttgttgttgc agaggttaga 180 acgggtgtgc tggacccgat tgaggtagag ccgctacttc aagctctttc cctatccgtg 240 gcagtgactg catcattgct gtataagggt aggcccctct catttagcta aaatgtttag 300 ccccgccccg tttaatttgg gcggcgaccg taatggtgta gacatggcgt cgggcacacc 360 tgatgcttgt tccactttgc ctgcctacac tgttgcggga cttgtttccg atcctggtgc 420 acctagtatg tctagaggtc cggtcggccc tactgaggtg cctgtttccg ttcgcgagcc 480 tgatgcgtga acgccattct caacttttgc cgcagcacct ttgttgcagg tgcccactgg 540 ggctgccaag aatgttcggt tgaggccact tggtcctact ggtgatgaac atctccaccc 600 cttgccttct ttggcccctt ttgctctgca ccacccgctt aacactccca taaatcgtca 660 ggatgttcca acggtgacac cagaaaccct gacgacagat gtggaccacc gtgctgtggc 720 tgcgtgtgca ttagcggtgg aagcagctgc tgctgctgat gctgcagtag tcgcagccga 780 gccagagcct ttgcctgcgg ttcggccaat ttcttctgcc gacctccctc gggttagttt 840 accgactcct gttttgcagc tagataccaa gcttgatgcg aagcagactg ctgcccacgt 900 aaaggtgttt atttgtgaca cgtctttgtt tttcgaaatc gtgccctggg gtagggacca 960 tcggtcatgc tgcctgtttt tgttgcaagc actccgtggt gttgcaaaaa cgtggtatga 1020 tgagtggtct ctatcacagc gcgagcttac tgctcagctt gttctggata acctgagcac 1080 gcgttttgct cctcaggtta tctctgttga ataagaagca cgatgtaggc tttctgacaa 1140 atcttttgcg atgtgtgctg gcgaaagtgt accagcttac cttttgcatc ttgaggccgt 1200 tttccaaggc atacccacga tcactcctag tgagtgtatg ttttggtttt tcgaaggcct 1260 ttcttcttcc ctgcagcccc actgcaccac agacgtctat ggcaagccgt ttgcctctta 1320 caataccctg gtacagcatg ccttgggcca ggaagtgcgc gccctgtctg aacgaaaagt 1380 tcgttctgct cttcgttcga attctgtttg gttttgcagg attatgacaa agatgagcct 1440 ccagtcaagt gggcgcatgt ggaccccggt cctcgtctca ctgcagctgt tgctgggccc 1500 cctaggcaga cgggacacgg aagcggtcct aagtgtaata gtcagggggg tagaacgggt 1560 tcatgtggcg ggcgtgggga taggggtact gaccgtccca gtgctcccac cggtggagag 1620 tccgccactc cgttggtgaa ggcttgcaag ttgaccaagt gggtcaacca gttcggtcac 1680 aagctgacgc acggagaggt gggcaatctc cggcgacatg tgagcggtaa gaccatctgt 1740 ttctgttgtg aggtggttag tcctgaccac ctctacgatg actgtcctgc tcttaaaagg 1800 ttgcgtgaag ctgggctgtg ctaggaattt gctcagggcg gtattgaggg atattacctg 1860 agtttccttt tgcggggatt cattctttgg tccgcacggt tagaccctct acattccacc 1920 aatgccacca atgccgaaaa cgtttggcca ccagtctgca gagacaccag aggcaaagca 1980 accacagaac cggaggcaac tgtgcaaaga gaggaagcaa agggctcccg ggcaacagag 2040 agacaaggtg aaggtccatc gtaccacaac tcagcaggat acggaatacc aggaagctct 2100 actgttttac cctcaagtga aaggccattg aaaaggacgg actttgcagg aaacataagt 2160 actcggcgca tacctgctag cagcattgaa gcccgccggg cgacatgcaa aggtagcaaa 2220 atgctggccg cggtatcagg acggtggtgc ttgcatgcga ggtagtgccg aagcgaaacg 2280 cgcaattgag tgagggatgc agggacaaaa agcacagtat gaccaccaac gtcgaccgag 2340 cagagagagc gaccacgagg aaccgttatg ttacattccg agtcaaaacc cggtttgaca 2400 gcaacagtgt caaaagaaaa acggcgtcca atggcactct caaactctgc ctcacgactt 2460 tattagtgag tcccttgtcc aacggctaca cctcccggtc cactcatcag actggtccca 2520 tgtttcgctc gctgatggag gtaggcaaga tatcgtgggt caggtgtcgt ttcgtgtggc 2580 agtcgggtct ctgtacctaa ccgtctcacc atacgttttg ccatccttga ctgatgctgc 2640 tccttttatt ctgggatctg atactttgag taagcactct gcatccctgg attattagaa 2700 caatattttg cgttcgtcaa agggtactgt tcggtactca attccttggc gctcgtcttc 2760 taatgattca ggtgacagtg gtgctgcctc gtcggcgccc cttgttaatt ttgcggctgc 2820 agccatgtgt gcacacgcca cccctgagtc tattggtcgt aaggctgcta tgcatcttat 2880 tcacaagggg gcacatgctt tgctggttca ttcttcggtt agccttaacg ccacttctgt 2940 gattcctccc actcaggacc ctgaagtttc tgcactgctt gaggaataca ctgatgtttt 3000 ccgggagatc ccgggtattc ctccagtttg tccggtggat cacacaattc cattggtgcc 3060 tgacacccaa cccgtcacat gccctatgta ccaacttagc cctcttgagc ttgatgaggt 3120 caaacggcag gttactgagc tgcttgctaa aggcatgatt cgtccgagta tgtctccctt 3180 ctctgccccg atcttgtttg tgggtaagaa ggatggttcc ctacacatgt gcatagatta 3240 ccgtgggttg aattccatga ccactaagaa ttggtaccct cttccgtgtg tagacgattt 3300 gcttgataag cttcacgggt ctgcttactt tagcttcata gatctgcagc agggatataa 3360 tcagattcac attgctgagt ctgatattcc taaaaccgct tttcgcactc ctttcggtca 3420 ctttgagtac acggttttga gcttcagcct tgttaacact cctgctactt ttcaagccgt 3480 gattgaccat atgttcaggc catacatcga taagtttgtc gtgtgctacc tggacgatat 3540 cctcatctat tcaagaacga aggaagagca cctccaacat cttcgtttgg tgctcgacgt 3600 tttgtggcgg gaacaacttt acaccaagca gtccaagtgc cactgggtga agtccgaagt 3660 tgagtatctg ggtcatgtgg tttccgttga gggggttcgc atggacccta agaagactgc 3720 tgcggtgcat gactggcctg tcccgacgtc attgcttgag ctgcgaaagt tcctagggct 3780 taccaattac tttcacaagt tcatagccaa ttactcgtct ctcgccgtgc agttgacgag 3840 ccttacacac aagggtgcgt tttcttccgc tgatgtttgg actgctgaat gtcaggcatc 3900 ttttgaggct attaaacgtg ctgttgcgaa cgatatagtg ctgcgttttc ccgactactc 3960 tcagcctttc cgtgttgaaa ttatttccga cgcctcactg cacggtacag gggcagtttt 4020 gcttcagaac ggtcatcctg tcgcgttttc cagcaagacg ttttctgctg ccgaacacgg 4080 ctacactact ggtgaacaag agctactagc cgttgttcac gccttgcgtg aatggcgctg 4140 ctatcttgag ggacgcccgt ttgttgtcaa aactgaccac aagcctctaa cctttctgca 4200 aggtgttccg actcttaacc gccgccaggc gtggtggtta gaatatatgc tgcgttttaa 4260 cttcacttgg gaacatgtgt ccggttccgt taacattgct gatgctttga gtcgccaccc 4320 ttccttgcac tctgtcgtcc tgtcggttgt gactcgacgt cagtctgtgg ctgccgattt 4380 gacgatttct gcttttgcca aatgaatcgt ggacggatac aaaaccgacc cttggttcaa 4440 cgttgagcag tgtgatgttt gccaacggca gaagccgaaa tctggtaagc aatctggcct 4500 gcttcagccc ttgccgattc cagactcgct tgggagagtg tgtcgcttga ctatgtcgtc 4560 gcacttcctc tgtccgaggg gggatatgat gctgtcctca tcatggttga cgcttgacca 4620 agatggtaca tttggtaccg accaccacga cagttaccgt ggagcaaacc gctcgactgt 4680 tctttgataa cgtgctgcgt ctgcatggtg ttcccaaaca gattatttct gatagaggac 4740 ctcagtttgg tgccaagttc tggggggccc ttggcactta agctaatttc cgagtaagcc 4800 tttctactgc ctatcatcca caaactgacg gtcagactga gtgaatgaat cacactttgg 4860 gtgaaatgct gcgaacctat gctggcaaca accctcatgt ttgggacacc tatctttcgg 4920 ctgcagaatt cgcgatgaac aacgctgtca atcgctctac aggacaatct cctttcttct 4980 taaattatgg gttccaccca gctactcccg tctcatgtga acttaatgtt ccggtcccgg 5040 cagccaaatc ctttattaag tcgtacgttg cttgtattgc agaagtgaag cagtgtctgg 5100 aaaaagccac agaccgtacg actaattatt acaaccgcgg cagagccaaa gttaccttca 5160 aggaaggcga cttagtgctt ttaagtacga aaaactgcgg cagttagccg tcggacctcg 5220 taaattattg ccgcggtggg tgggtcctta ccctgtgaag cgcatatttg gcaaagcagc 5280 ggccgagctt gtcctactgt ctgatatgca catccacccc accttccacg taatgttgtt 5340 gcggccttac aaggcgccag cggatgcgtt ggattcttca actgttcacg acagttcttc 5400 tgcactttct agtcctgcag gaccaccgcc ggttcagtgg ctgaagagcg atccacttta 5460 ctcggtcgag cgcatacttg attatcgtgc ccgctgccta ggaagacacc gtaaggggct 5520 ggtgcacgag taccatgtca aatggaccgg gtattccaat gaacataata gctgggagcc 5580 agagaaaacc ttaacacccg atcttcaccc cgaacttcaa gcagttaagg ctcgtgccac 5640 taacactgcg aggatgctgc atccagaggg gggatagt 5678 // ID Copia-1_AL-I repbase; DNA; PLN; 4122 BP. XX AC FR824375; XX DT 16-MAR-2011 (Rel. 16.03, Created) DT 16-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Albugo laibachii genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_ALN_; KW Copia-1_AL-LTR; Copia-1_AL-I. XX OS Albugo laibachii OC Eukaryota; stramenopiles; Oomycetes; Albuginales; Albuginaceae; OC Albugo. XX RN [1] RP 1-4122 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Albugo laibachii genome."; RL Direct Submission to RU (16-MAR-2011). XX DR Genome; FR824375; Positions 23607 27728. XX CC Positions [1401-1937] - Integrase core CC 'ACGTG' target site duplication CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS 1305..2924 FT /product="Copia-1_AL-I_1p" FT /translation="MEDCVDGLTLKQVEKNNDEDDICEGCAYEKSSIKAFP FT RSHYGTLKTQSLLEMIHSDVMGPMHTSSQGGARYMVTFIDDYSRYVMVYFI FT KQKSQIIDYFVEYKSLVENQFNKKIKCIRTDNGGEYSNHLFAKICQQAGIR FT HLMTVPHSPQQNGLAERMNRTITERVRSMLHHMHVDQKWWAEAMNTAAYIT FT NRLPCAAHPDKTPFQICFGHRPNVNGMRVFGAIGYAHIAKARRKKLEKKSF FT PCMFLGYSDDIKGYRVWNMDSKRVELTRSAQFQESPQPKYIDVNFNHGNDV FT PPRHLDSDDDHDIPDTRIMMPPVEQSVEPMDIDEEVAATELSRRPTTDDTD FT AIMVPHNPQQAIVPRGRYYVSSGYTPFRPFEHDTLRHGDNSHTMVPYETSE FT SIVPHTTEEIRPPKRHRIEYDQANVVLEALTTYYDAVKSPEAEFWKKAIAE FT ELKAFKEKKTWAMQKKEYNQKVIGTKWVFTIKRNEHGEIQRYKARLVALGY FT RQTYSFDYRETYSPVANMNSIKVFLSICCQEGFLVHHTTLIRHF" XX SQ Sequence 4122 BP; 1374 A; 818 C; 944 G; 986 T; 0 other; ggttatgaac ccaagctcaa atagcatggc cgacgagatg ctaaagcaga acaactattt 60 cacatgggag tttaacaccc gaatgaaatt aatgaagaag ggtctattag accatatcga 120 cggagtcaaa actccagatg acgaaagtgt cgaaagtgtc gaaaatgtcg agctgtggaa 180 agtcaacgat ctaagggcgt ttgcaatcgt cgcatcatct attagtccaa acctacagtc 240 gatggtgcga ggcgcaagta cggcagctca agtgtgggag atattaagaa aaaaaattct 300 tcgcaacagc gtgcacaacc gggtggaaaa acgtcggaaa ctccatgagt ttaaaatgaa 360 gaaagatacc gatctaatgg aacacttctt cgaatttgac gaaatgtgca tgaaaatgca 420 agcttcccga gaatcaatga atttggatga ccaattcatc atattgctcg gaagcctttc 480 ggatgattac gacattatcg tgaaaatcat cgtgaataca caaggaatgg atttatttac 540 cgcaaaagaa atgttactcc gggaatatga aggaattttt cgtaaagaac gaagtgaatg 600 cgcattaaag gcaacaaatg aaataaagct ttggtgcgtg aagtccgaat cagatgaaat 660 atttcggtgt gggaaaatca attcaaatag aaaattctga tgcacgaaga tcacatcaaa 720 gatattgtgc atttcaagga aaatgtttca attgcaacaa gttcgggcac aggaaagtcg 780 attgtaggaa gaatcggact accaccaaag aagagagtgc attctcctgt tatacaggct 840 catacggtcg ttggatacta gacagtcgcg ccagcagcga catgtgtcca tttcacgatg 900 acttcacgga aatctgcgcc ttgggcaagt tgttactcat ctctgtggct aacggattac 960 aggtggaagc acagagaatc ggaactatcc gcgtcatgtt acacaattta taaccaattc 1020 gaattgaaga cgtgctatac gtaccgcaac tggatcgaag gttattatct atcacagcgt 1080 tggcaggaaa gggtcttgat gttacattta gtggatcagt ttgcagaatt gaggataacg 1140 aagcagttat cgtggaagtg tcaaaaacag ggaagctgtt catccttcaa tgtaaacgtg 1200 tcgaagatgc aaacgtggca ggacatgttg aacgaacaag accagtaagc tttgatatat 1260 ggcatgctcg gcttggacat ctacagctaa gaaagctgaa aaatatggaa gattgtgtcg 1320 atggactgac attgaagcaa gtcgagaaga ataatgatga agacgacatt tgtgaaggat 1380 gtgcttatga aaaatcatcc attaaagcat tcccaaggtc ccattatgga accctaaaga 1440 cacaatcgtt gttggaaatg atacacagcg acgtcatggg acctatgcac acctcttctc 1500 agggtggcgc gcgctatatg gttacattta ttgatgacta ttccagatat gtgatggtct 1560 actttataaa acagaaatcc cagatcatag actattttgt cgaatacaaa tccctggtgg 1620 agaatcaatt caacaagaag atcaagtgta ttcgcacgga caatggtggc gaatatagca 1680 atcatttatt cgcaaagata tgtcagcagg ccggaatacg acatctaatg actgttccac 1740 actctcctca gcagaatggt ctcgcagaga gaatgaacag gacaataaca gagcgggtaa 1800 gatccatgct tcaccacatg catgtcgatc agaaatggtg ggccgaagca atgaatactg 1860 cagcatatat cacgaatcgt ttaccgtgtg ctgcacatcc ggataagaca ccgtttcaga 1920 tatgttttgg acaccgaccg aatgttaacg gaatgcgagt gtttggtgct atcggatatg 1980 ctcatattgc caaagctaga cgcaaaaagc tggagaaaaa gtcatttcct tgtatgtttt 2040 tgggttattc tgacgatata aaaggatatc gtgtatggaa catggattcc aagcgtgtgg 2100 agctaactcg ctccgctcag tttcaagaaa gtccgcagcc caaatatatt gatgtgaact 2160 tcaaccatgg aaacgatgtc ccaccacgtc atttggattc cgatgatgat catgatattc 2220 cggatacaag aatcatgatg ccacccgtcg aacaatccgt ggagccgatg gatatcgatg 2280 aagaagtggc cgctactgaa cttagtcgga ggcccactac ggacgatacc gatgccataa 2340 tggttccaca taatcctcag caggctatcg tgcccagggg gagatattat gtctctagtg 2400 gatatacacc gttcagacca ttcgagcacg ataccctgcg tcatggtgat aattcacaca 2460 ctatggttcc ttacgaaaca tcggaatcaa tcgttccaca tacaactgaa gagatccgac 2520 ccccgaagcg acaccgaatc gagtatgatc aagcgaacgt agttctggaa gctctgacta 2580 catactacga tgcagtcaag tcccctgaag cagaattctg gaagaaggca atagccgaag 2640 agctgaaagc ttttaaggaa aagaaaacat gggcaatgca aaagaaagaa tacaatcaga 2700 aagtgattgg caccaagtgg gtatttacaa taaaaagaaa tgaacatgga gaaatacaga 2760 gatacaaagc cagactcgtt gcacttggat atcgacaaac ctatagtttc gattatagag 2820 aaacgtattc tccagttgcg aacatgaatt cgattaaagt tttcttatct atttgttgcc 2880 aagaaggttt tctagtacat catacgacgt tgatacggca tttttgaatg gatatccgga 2940 agaagaagta ttcatttatc ctccacgtgg ggtggaagga aagcaaaatc agatatgcaa 3000 actcaaccgg aacctttacg gattgaagca atcagcagca acatggttca aaacaatagc 3060 agaagtattt acaaccatgg ggtttcttca atgttgatcc gactcgtgca tatttgtccg 3120 acagcaagga aattcaataa ttcacatcaa gctatacgtt gacggcatgc tggtcggagc 3180 aaagacgact gaagagattg aagacattca tacgaagctt tccaatcgat tcaagatgaa 3240 agatctggga aatgctcggt ttgttctggg tatcgaagtc aattatgaac gagaagcacg 3300 gaaactgaag atcaaccaag aatcaagcat tagaaggatg gttgaacgat tcaattcaag 3360 aaaaagccaa atctgtcaca aatccatgct tacaaggaca gttccttccg aagatggaac 3420 aagaagatcc aaggatgaag aatcgaccct atcgttcctt ggtcggttca cttctctaca 3480 tatctactgg aacacgaccg gatatagcat tttcagtgtg ccaactgagc agacacttgg 3540 agaaacccag tgaagaacat tggaatgcag ccatccgcgt tctgcgatac ttgaagacaa 3600 cagcatcgaa tggtattata taccagggac gaaagaattg gatgcaaacc agtgcataca 3660 gtgacgcgga ttgggcaagc aacaaggaca gcagaaaatc gatgtctgga actatggcta 3720 tgatcaatga gtccccggta atattcaagt caaaatatca acaaagcgtt gcgctgagca 3780 ctgctgaagc agaatacatg gctctttcat tatgcgttca agaagtacta tggctaaaca 3840 atttacttac tgagatgaag ctgcaagtca gatatccagt gaagatatat gaagacaacc 3900 aaagcgcaat cgcccttgca aacaacgata gataccaaag tcgtgccaag cacattgata 3960 gcaggcatca ttatgtgcgg caacatgtca agctaaacaa cattaccttg gagtatatcg 4020 agagcagaaa acaactggcc gactttctca caaaagctct atcgacagga caattccagg 4080 ggtcgccaag tctaatatag ggaattgtat gtcgaggggg ag 4122 // ID Copia-2_PIT-LTR repbase; DNA; PLN; 175 BP. XX AC AATU01002685; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PIT_; KW Copia-2_PIT-I; Copia-2_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-175 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002685; Positions 54371 54197. XX SQ Sequence 175 BP; 45 A; 41 C; 52 G; 37 T; 0 other; tgttggattt ggaccgtgcg gctggagcag ctgcggttca aggcggtaga aaagaccggt 60 tcggccgccg actatacgga cacacaggag tggtggcacg ggtggctgcc acaggaagat 120 ggttaacaga gcaaatatca cttctacatt ctcacagtat aacctctgtc taaca 175 // ID PCAL_LTR repbase; DNA; PLN; 280 BP. XX AC AF007776; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans Ty1/copia-type retrotransposon PCAL_LTR, long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; PCAL_LTR; Ty1/COPIA superfamily; KW retrotransposon. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-280 RA Matthews D.G., Goodwin J.T., Butler I.M., Berryman A.T. RA and Poulter T.R.; RT "pCal, a highly unusual Ty1/copia retrotransposon from the RT pathogenic yeast Candida albicans."; RL J. Bacteriol 179(22), 7118-7128 (1997). XX DR Genbank; AF007776; Positions 1 280. XX SQ Sequence 280 BP; 102 A; 42 C; 50 G; 86 T; 0 other; tgttggtttg tgcactattt tgtgtcagaa actgatcaat gaaaatgatg gttattatga 60 gaatggaaaa tttttccatc acacatcagg tgatgacaga actaaactat attgtgtagt 120 ataaataagg gtatgaaata ccaacatccc agaatatcaa cgagatagaa gggaggagtt 180 tcaatatata tcttgtgaat aataacttcg ttctaattca ctatacacaa ctagacgtgt 240 acacgctcaa tctcaggtaa agaaagttta tattccatca 280 // ID Copia-9_ES-LTR repbase; DNA; PLN; 1121 BP. XX AC CABU01005729; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_ES_; KW Copia-9_ES-I; Copia-9_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-1121 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005729; Positions 4785 5905. XX SQ Sequence 1121 BP; 274 A; 272 C; 246 G; 329 T; 0 other; tggaatattt ggcactaccg tagcttcaac attaggtagt cagtttgact agttcaaata 60 ttgtcaatgt cgctatgtca tgtaggtaaa attccgtatg gtctgtcata ctcggaatat 120 ggagacatgg ttgatgttct gtgtttcata tccagaaata atctgcatag cctagatttc 180 cagaaatatg tcaaagtgca agtagctcag acttgcgtgc tcggaaatat atatgcatcg 240 ggtagttgtc gcaagtgcct ctgacttgtg tgtatgaaag aatatgtacc gccgcaagta 300 actcagactt gcgtgcttga atgaatgaat atttgtctgc gctcagcagt cgaatttgga 360 aagtacatta ttagttcaat tgttgaagct gtattctgtg gtttgtcgta cgtcagtgca 420 agtaatcact tgtgcgtgca agtacaatac ttgatgtgca tacgtggcac aagttcgaga 480 gcatggtgtt gaagtcatct ttccagaaac gtatcgtagc ttaccagtac cgtattctga 540 acacgtgtga ttggtcgacg ttgtcggata ggtgtgattc catgatttcg agaatgagcg 600 cgtactcgcc ccatcctctc actctgcttc tctgggggtt ctccaaccct ctgcttcttt 660 ggggtttctc aacctctcta cttctccggg gttcactacc cctctgtttc tctacattct 720 ttctggtctc cactgatcaa gtaattacat ttccaccaca ccatcttctt ctccttcgga 780 ccttcctgcg tactcagagc caagcctctc gtactaaagg gtccagcggc acaacaagtg 840 agttggcacg ccgcgctgca gccgtacagg acacgtacag gcttacacgc agcacttgag 900 tttttgcctt tgacctgtga ctataagatt gcacaatcgg gtgctctgct tatgtaaatc 960 agtggtcatt gctgcatacg cacgttctac ttgcgcgaca cactgcggag agagcacgca 1020 ccaactcaag agtaaattag gactaccctt tttgacgaca aacaacaaca cctcttcgag 1080 agccgatacg ggtcgtcaac acccacaagc ctacatcccc a 1121 // ID TDH5_I repbase; DNA; PLN; 4435 BP. XX AC AJ439552; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Debaryomyces hansenii retrotransposon TDH5_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TDH5_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Debaryomyces hansenii OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Debaryomycetaceae; OC Debaryomyces. XX RN [1] RP 1-4435 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439552; Positions 458 4892. XX SQ Sequence 4435 BP; 1186 A; 947 C; 987 G; 1315 T; 0 other; ggttatgagc cactttttgg actttgatgt tacggagcag gataagctcc gtggtattga 60 taactacaaa ctttgggctg ctatggtaaa gtccagactg ctggaccttg actgccactt 120 agatctgtat ctaagtaatg tggatattcc tggtgttagt gagtttactg acactgaacg 180 gaatgtgatt agacttaagt ttgatctgat ccttgacaag cttttgaaaa agtgcattac 240 gtctgctgtt tatgcgacgt actgtactaa acgtggttta cgtggactta atttatggca 300 tgctctattc cgcgactttg gaactatttc tgttaagcag catttagagc ttcattccac 360 gttaacccgt cagctttttg attctactgt atcgcttgct gctaagattc aacttcttga 420 agatgctgac ctggaccttc ttcctttgga tgaaggccag cggattctct tctttcacag 480 ttgtgttaat aacagcactg ttaagaacgt tattattcgt cttgacgaat acgttccctc 540 ccgtcttaat tggcttgcat tgaaagacgg gatctctgag attcttcacg agacaagttc 600 ccccgtgtcc gatgagtcta gtatggctct tgtggtcctg cagcgaaacc ctcgaagaat 660 tatgatcaag tctaagttga cttgtttcaa atgtggtggc attggccaca aactgaatgt 720 ctgtccctct cgaagtgatg acgagtattg gaatctgcaa ccaccgaagc cgacgaataa 780 gcccaattat tttgtgacat atactgagga gaaacccagc gtctctccca ccaatgctgt 840 atgtgggctt agttacttgg tccccaaacc tagtcagcac actgctgcct atgctgacac 900 cggtcaccag acgtcttctg cctcggtatc tcatggttgt gcagctgcta ctgatagcca 960 tagtgatgtc ttccttcttg atactggtgc gtctgttcat attacgcatc agaaggacct 1020 acttcatgat tttaatcctg ataactctgg taccattgct ggacttgacc ctgctaccac 1080 gttcaagatc cttggtactg gaacattgaa atttacgtta cctgatggtt ctatactccc 1140 cgttgaggat gtgcagtatg ttccttcctg cggtcgtaat ttaatctcgg ttagccgtgc 1200 atctaaagga ggttcaacat tccaccttct acccgatggt atcgttgacc ttcgtttagg 1260 ccttcaggtt gctgctctta cgaaggatga tctttatcaa ttttcactcc catgcttgcc 1320 tgctcataat gtatcagctg gcactgcgtt tactgctaca atggatgccc attctcgtct 1380 tggtcatcca agtcgtaagg ttgcgcaacg cattggcacc ttatgtcctt cgtatgctgc 1440 tgcgttgaag tcggaatcga aggattccct ttgtgagtcg tgtattcgtg cgaaggctac 1500 gcacgctctc cctaaaacgt cgaccacttc cggtcgcact gtgaagactc cgttggagct 1560 tgtccactct gatgtctgtg ggccgttttc ccagccgagt ctaacccaag acttatatta 1620 tgttgtcttt gttgatgatt acactcacta tatggcagtg tatcctgtta aacaaaaatc 1680 tgatgtatat gagtgtgcgc gctcatattt tcttcagtct gaacgattct ttcataatcg 1740 tggtggctac aagccggtta cttttcgcac cgataatggt ggtgagtata tgtcgtccca 1800 attgcagcaa tttcttaaag ctcaagggat cactcaccaa accactgttg cgtacaatag 1860 tcatcagaat ggcgtcagtg aacgagccat tcgtacgatc aatgaaaaat gtcgtgccat 1920 gatgtttcat gcatccacgc ccctgtgttt ttgggccgaa gctgtagcgt gtgctactta 1980 tcttcttaat agattaccgt cgactgctat tgataagcaa tatccctatc aacggtggta 2040 taagagtcat gcccagtggg accatttgcg cccatttgga tgcatggcgt atgctcttat 2100 tccacaacaa ttgagatcgt cgaagttgtc tcctcggtct attcgaggtg ttatgcttgg 2160 ttatgcccaa acccaacatg catatcgtat tttcgatctc gactctggca aagttgctgt 2220 tagtaataat gtgaagtttg acgaatttgt gtttccgttt caaactatga ctaacattcc 2280 ccgggatatt gcctctatag gctcgctgtc gtcgtcgctg tcttcgtttt catccattcc 2340 cgggattcga gctactgctg agctccccgg tactcttatg tcgccacctg tgctggatgt 2400 cgacatgtct gatattgaat ctgatttttc gtcccatgat tctatggtcc ctcaggatct 2460 tgcgtctcct gtcgatgggc catctatgga tatcgtgggc ccaccttctc gtggttcgct 2520 gtcgtcctct cctggtatta ccaccactcc tagagtggtt gaaccgttgt cccctctcgt 2580 aacgcaagag gtgtctcgtc ctcgtatcga gtacatttct gactcagaag cttcggttcc 2640 aggggaagac tacgctactt ctttctatga acgtcatcac gataactttg ataagtctga 2700 tgatgaggat tatgttgatg aacctgtgag gagaagaaga gctattacta tgcctgatag 2760 actgcgtaga agatcagaag tatcgtcgga tggagaaact gaaccttcta agaaactgaa 2820 atatgaaaca ctgcatactg aatcagactc ctcgcttgtt gtcagaggat ctggttattt 2880 catgtcacac gcctatgttg ttagtaccaa gaaagatggt gtaccagtaa catacaaaca 2940 ggcaatgctg agtgacgaag ctgaaaaatg gaaaatcgcc atggatagtg agatgagtgc 3000 tcactactca aataatacat gggatttagt actgttgcct aaggatagaa aagcaatagg 3060 caacagatgg gtatttacca aaaaagatga tggtagatac aaagctagac tagtagcaca 3120 gggcttcagt caggttccag gggaagacta cttagatacc ttcagtcctg tgatcagata 3180 tgaatctgtg aagctacttc tagcattcag tgctgttgat aatagagttg tccatcagat 3240 ggatgtagat accgcatttt tgaacggtac tgttgaggaa acactctata tgaaacagcc 3300 tgttggattt attaatgaga atgaaccaga gaaagtctgt aagttgaaca aatcgttgta 3360 tggattgaaa caagcaccga tatgttggaa tactacaatt tcagattttc ttgctgaaca 3420 taggttcaac cgaattgaca ctgagttagg catatacgtt cgagggaaca taattattgg 3480 cctctatgtt gatgatatcc ttatatcagg aaaggatatg aaggaaattg aagatgtaaa 3540 gaaaatgctc gcactgaagt ttaaaatgaa agacttaggg gttgcgaaga agtttctagg 3600 aattaatatt gcacaggata ccaatggtat caagatatgt ctctatgact acattggaaa 3660 ggtcttgcag gactttgaaa tgactgatgc aaacacggtg acaactccga cattggccgg 3720 agaggactta cacaaggaca acacagaaga atgtgatgcc accaggtacc gctctctagt 3780 aggaaagcta ttatttgcat ctactactgt tcgaacagat attgcgtacg ctgttggaat 3840 acttagtaga cacttagcca aaccctctga gatgcatatg aaatgtgcca aacatgtcct 3900 cagatatctt aaaggaaccc aagatatcgg ccaccattat actggagaca gctcattgga 3960 tatatattgt gatagtgact gggctagtga caagagcgac aggaaatcaa ttacaggata 4020 cattgttaga tatggaggag ctcctatctc gtggaaaagc aagaaacaga ctacagtggc 4080 aatgtcgacc actgaagctg aatatctcgc attgggtgag gctaccaaag aagcgctatg 4140 gatcataatg ttgtttgacg agatgcgtgt gccattacaa ttacccatct cgatccacga 4200 agataataac tcatgtatac tccttgcaga gcaccctgta tttcacctgc gcactaagca 4260 tattgacata cgccatcatt tcataagaga gcatataata aagaaacaaa ttaaactttg 4320 tcagattagc acccatacac aaattgcgga catgcttaca aaaggattaa ataagattaa 4380 gttccaggac ttgagaagtc ttgctggaat gacaagaatt aggattaagg ggaag 4435 // ID Gypsy-11_PSo-I repbase; DNA; PLN; 8417 BP. XX AC AAQY01000287; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PSo_; KW Gypsy-11_PSo-LTR; Gypsy-11_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8417 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000287; Positions 92679 101095. XX CC Positions [4538-5032] - Integrase core CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 1594..3306 FT /product="Gypsy-11_PSo-I_2p" FT /translation="MALLPLRTHRQVRDSPLETALNDAVPERPGRARARTQ FT EQLASALPPTANEGNVLTSEVDTRFSANQEESPASRGTDDAGESHASAVEA FT DANLIGSGLANNKSQGDVTPSTPGVDGLGEFDSSARGADATSVMEGSANNR FT RRGKNGVSTLGVDAASGADGCKRPAPEKLACCRAAGLHDEAPGDRAGLEVA FT RPRDEPAVGTEEEHPSTAGPGRSQESCGAGIRRTRRRRMRRSLRKPRPGAE FT TLQEMSAGQTEAEKPDVETLNVLTRTCAGFRYREMPLANPLTQASELTSLP FT VMSWKRFARDLHDGRIEQICILSDAEKTKSENEELRQFFMESTTESEDTLS FT AKTKKERFEEQSWDSLKTSPYYEILREYADVLPEEIPADLPQGKGIQHEID FT LVPGTKYCVTRQRPLPREQVKAIDDFFESRRKAGQVRESKSPHSAPTFCVK FT KPQGGWRIVHAYNKLNDATIPAQTPIPRKDVIIDSMARSIIYSALDLRDGF FT YQILMRESDITHSHDREPAERHALGVASDAAGSEERPCDLQQVRDALVALG FT ARLRTELLRRCVRPHPGCGRDERC" FT CDS 7281..8417 FT /product="Gypsy-11_PSo-I_5p" FT /translation="MAATLTTPRTLEPLHMPSAAGELLSRPGTAPDATSVS FT CTVTATLTDLLDTGPLANLAAASTENPPCAPVYADDRDEPMQLLPADSTAS FT RSTDEEMVPVPTCIARVPEPATTTTSTDSNLERPDDLLWTLYFDGACRHRS FT TAIGAAPGAGATLFAGTVNKWTFARYLDSTTHTNNTAEYIALISGLTGALH FT HGVRRLTVKGDSTLILEQVRGRYACNNARLRQLRNQARRLLRRLDYYELVH FT VDRLENRDADRLANRALDGRRTRTECATHGMDGDGYRGRLTSDRLASGSRA FT GRDAEPREHPVDVEMENADDEAAATAAADIVRRDRGQTFPVLPVTAYSTPS FT RQPRLKLRNNLTERELEEAHAAVQRLGHEFADKLTV" FT CDS join(2978..4165,4169..5278) FT /product="Gypsy-11_PSo-I_3p" FT /translation="MRRYRRRRRYLEKMSSSIRWPGALSTALLICAMGSIR FT SSCVRAISLTLTTVSPPSGMLWEWLVMPQGLKNAPATFNRCVTHLLRSVRD FT FAPSYFDDVFVHIRAADGMSDVEMHKVHLRKLLALMRKHKLYANLKKCIFG FT ASEIPVLGCLVGKNGVRPDPEKVRVINEWPTPSNVKELRQFLGLTTYLFKY FT VKDYAGMIRPLSQLLKKDAEWVWTAECQQTFDAVKRGLTESPILAVADQDR FT PFHVVCDASDFAIGCALMQHDHEGRDRVVYYQSRQLKPAERNYPVHDKELL FT AMKYALAKFRVYLLGSKPFVVYTDHASLRMAVKSPHISQRIARWLSFFAEY FT NFRVEYKPGRLNVVADALSRRPDYATTDADVNAIDAMRSSTPTSSLLDDVK FT VAAHDADAKLLLAYGSAPSGKARQKLPKHLRARAHRYRVHDGLLLYSAVDD FT NADRFVVPNDHDLRLRIMYEYHDAPTAGHPGREKTYLLLTRDFYWAHQYKW FT VRKYVRACEVCQRVKPAPFAQVPLQSLPTPRECWQSMSLDFVFGLPPDRQG FT NTGVVVFVNRFSKMVHLAAVPAEVTAKQTARLFVDMVFKHHGMPIDIVSDR FT DQRFTAHLWQEVFTLLGSQLSMSTADHPQTDGQTERVNRVLVDVLKSYAHS FT FQHWSECLPMAEFAINNSVHASTGHTPFYMNAIRHPRLPSLLGMVSPSLSG FT GGSPTATQQPQNAADTCTVSAATTRSKATNRASVQDTDADKRTKNVSVRGT FT YTDKKKKKKKKNGSV" XX SQ Sequence 8417 BP; 1852 A; 2447 C; 2499 G; 1619 T; 0 other; cctggtagca ctttgtagtc cgtccaacga ctgactaccc aagttagtac gtcaccgcac 60 gaacgcggag ctgagaacct tcccgtggat acagaggtgc ccatggaaag ctccactacg 120 cctgcaactc acgttgcacg cgctgactgt ccccacctgt cggacccaga gtgggaagct 180 ctccaacgac tgtcaacagt cattggtgag gcggctgtag ttacgatgct gcgtacgcta 240 acgtcgacag agcaacacgg tgttgctctg ggtttcatac tgaaggagca acgcgatgtt 300 gctgctacta ccgctgtgtc gtccgggacg acaccacgcg cgcaaccgct gaagctcaat 360 gtgagcaact atgtcggaag agagggtgaa cctctcctcc gttggcttgt cgaacgcgac 420 acagccattg cggctcgacg tatcgtcgac ccgttgtcga aggttgcgtt cgccatgtca 480 tgtcttggcg gacgcgcaag aagttgggcg tatggacgcc gactctcgga tcctacgtgc 540 tttagcacgt acgagggttt caaggaggag ctcagacgag cgtttgagcc cccacaaaac 600 gagttccggt cgagggcgga gttcctcggc ctgcagcagg gcaagcatga tgtccatgct 660 tacgctcaga gagcacggta cttggtctcg aacatcgtga ccaatccgat cgacgaggcg 720 accaaggtcg tcacgttcat gaaggggctg agagatgggc ctgtgaagac ctatctcttc 780 cgtgagtacc cgagtactct agaagctgca attactcttg taatgcagga ggtgtttagc 840 ctgcggcagg ctaagctgca tgcacatgtg ccgaggccac agccacgccc ggtggtgagg 900 acgggaggcc cagaatccat ggacctctcg agtgctgcaa ctgccggacc ccagcagtcg 960 cagggaaata atgtgcgacg ctaccgttgc ggtagagtcg gtcactttgc tcggaagtgc 1020 acagcccccg tgcaccagca gggtggctat cgcggcggtg ccgggcaccg tcgcaaccaa 1080 acataaaacg ctagacgcta gtaggcgcgg ggcgccctac tggtaatgca gttccgcgtg 1140 tcgaccttgg acacgcgaca ttgaggactg cagcccccag tgagattcat tctcactgca 1200 agaaccaaga taacaagcct gaccttgtca tcctgaatgt gaactcgatg agagcaaacg 1260 gctctctccg tgctttggta gattctggcg tgtcgaagaa ctttgttcga ctgcgaagtc 1320 tatcaaggct tgacttcgag gatttaaaga tacctcgaag tatgttggaa gtacgactgg 1380 caacgggtgc catcgtaaag accgagaagc gcatggtacg cgtgcgcttc acgtatgaag 1440 atcaagagtt tgtcgagccc tttatcgtcc tggatctgga cgataagttt gacattgtat 1500 cgggcatgtc gtggcttgca cggcatgatc cggtcatcga ttgggagaag cgcactctcg 1560 tgcgctttgg tcgcgacagc ggaacagtga gcgatggccc tgttgccact acgcacgcac 1620 cgacaggtgc gcgactcccc actcgagaca gcgcttaatg acgctgtccc ggagcgccct 1680 gggcgcgcgc gagcacgcac tcaagagcag ctagcgtcgg cgttgccgcc gacagctaat 1740 gaaggaaatg tgttgacctc ggaggtcgac acccgctttt cagcgaatca ggaagagtct 1800 ccggcctcaa ggggcacgga tgacgcaggc gagtcacacg cctcagccgt ggaggctgac 1860 gcgaatctga ttggatcagg tctggccaat aataagagcc aaggtgacgt aacgccgtcg 1920 actccgggag tcgatggctt gggtgaattt gattcgtcgg ctcggggagc cgacgcaacc 1980 tccgtaatgg agggctccgc taataacagg cgtcgaggta agaatggcgt gtcgactctg 2040 ggtgtcgacg ctgcaagcgg tgcggacggt tgcaaacgtc ccgcaccgga aaaacttgca 2100 tgctgtcgtg cggccgggct gcacgacgaa gcgccgggcg accgagccgg gcttgaagtc 2160 gctcgcccgc gggatgaacc cgccgtcggt actgaagaag aacacccgtc cacggctggg 2220 cctggacgaa gtcaagagtc atgcggagcc gggatccgca ggacaagaag acggcgcatg 2280 cgaaggtcgc tgcgcaagcc tcggcctggg gccgagacgc tacaagaaat gtctgccggg 2340 cagacggagg ctgagaagcc ggacgtcgag acgttgaacg tcttgacgcg tacctgtgcc 2400 gggttccggt acagggagat gcctctcgct aatcctctga cgcaagcgtc ggagttgact 2460 tcacttccag tcatgagctg gaagcgcttc gcgcgtgact tgcacgatgg acgcatcgag 2520 caaatatgca ttctctcgga cgccgagaaa acgaagagcg agaatgaaga actgaggcag 2580 ttcttcatgg agagcaccac tgagagcgag gacactctca gtgcgaagac gaagaaggag 2640 cgctttgagg agcagagctg ggactcgttg aagacgagtc cctactacga gatcttacgg 2700 gagtacgcgg acgtacttcc ggaagagatc cctgcggatc ttccgcaggg caagggcatc 2760 cagcacgaga ttgatctcgt gccggggacg aagtactgtg tcacccggca gaggccactg 2820 ccgcgagagc aggtcaaagc gatcgacgac ttcttcgaaa gtcgtcgcaa agctggacaa 2880 gtgcgggaat cgaagtcccc gcacagtgct ccgacgttct gtgtcaagaa gccacagggc 2940 ggctggcgca tcgttcatgc gtacaacaag ttgaacgatg cgacgatacc ggcgcagacg 3000 ccgatacctc gaaaagatgt catcatcgat tcgatggcca ggagcattat ctacagcgct 3060 cttgatctgc gcgatgggtt ctatcagatc ctcatgcgtg agagcgatat cactcactct 3120 cacgaccgtg agcccgccga gcggcatgct ctgggagtgg ctagtgatgc cgcagggtct 3180 gaagaacgcc cctgcgacct tcaacaggtg cgtgacgcac ttgttgcgct cggtgcgcga 3240 cttcgcaccg agctacttcg acgatgtgtt cgtccacatc cgggctgcgg acgggatgag 3300 cgatgttgag atgcacaagg tgcatctccg gaagctgctt gcgctcatgc gcaagcacaa 3360 gctctatgca aacctgaaga agtgcatctt cggggcgagc gagatacccg tgctcgggtg 3420 tctcgttggg aagaacggtg tccgccctga ccctgagaag gtcagagtga tcaatgagtg 3480 gccgacgccg tcgaacgtca aggaactgcg gcagttcctt ggcttgacca cgtacttgtt 3540 caagtacgtg aaggactacg cgggcatgat acgcccgctg tcacagctcc tgaagaagga 3600 cgccgagtgg gtttggactg ctgagtgtca gcagaccttc gatgcagtca agcggggctt 3660 gactgagtcg ccgatcttgg cggtggccga ccaagatcgc ccgttccacg ttgtgtgtga 3720 cgcatccgac ttcgcaatcg gatgtgcgtt gatgcagcac gatcacgagg gtcgtgatcg 3780 tgtcgtctac taccaatcgc gtcagctgaa gccggctgag cgcaactacc cggtgcatga 3840 caaggaactc cttgccatga agtacgcact cgcgaagttc cgagtgtatc tactcggaag 3900 caaaccgttc gtggtctata cggaccacgc gtcgctgcgg atggctgtga agtcaccgca 3960 catctcgcaa cggatagcga gatggctctc attcttcgca gagtataact tccgggttga 4020 gtacaaaccc ggaagactca atgtggtggc cgacgcgctc tcgcgtcgac ctgactacgc 4080 cacgactgat gccgacgtca atgccattga cgccatgcga tcgagcaccc caacgtcgtc 4140 actgttggac gacgtgaagg tcgcgtaggc acacgacgcg gacgcgaagc tcttgctggc 4200 ctatggctca gcgccctctg gcaaagctcg tcagaagctg ccgaagcatc ttcgtgctcg 4260 tgcacaccgt tatcgggtgc acgacgggtt attactctac agtgcagtcg acgacaacgc 4320 ggaccgcttt gtcgtgccca atgaccatga cctgcgactc aggatcatgt atgagtatca 4380 cgatgcaccg acggcggggc atccgggccg tgagaagaca taccttcttc tcacgcgaga 4440 cttctactgg gcccaccagt ataaatgggt gcgcaagtac gtccgtgctt gcgaggtttg 4500 tcaacgtgtg aagcctgcgc ctttcgcgca ggttcccttg cagtcactac caactccacg 4560 ggagtgttgg cagtccatgt ctttggactt cgtgttcggt cttcccccgg accgccaggg 4620 gaacacgggc gttgtggtct ttgttaaccg cttcagcaag atggtacatc ttgctgcagt 4680 acccgctgaa gtgactgcga aacagacggc gcgtctgttc gttgacatgg tgttcaaaca 4740 ccatggcatg ccgatcgaca ttgtgtcgga tcgagaccag cgcttcactg cacacctttg 4800 gcaagaagtg tttacacttc ttgggagtca actttcgatg tcgactgcgg accatccgca 4860 gacggacggg cagaccgagc gcgtgaaccg cgtgctcgta gacgtgctta agagctacgc 4920 tcactcgttc caacactgga gcgagtgcct gccgatggcg gagttcgcca tcaacaactc 4980 ggtgcatgcc tcgaccgggc atacaccgtt ctacatgaac gccatcaggc acccacgcct 5040 cccgagtctc ctcgggatgg tgtctccttc cttaagtggg ggaggatctc cgacagcaac 5100 gcagcagccg cagaatgccg ctgacacttg cacagtgtca gccgcaacga cacgaagtaa 5160 agccacgaac cgcgcgtctg tgcaggacac agacgccgac aagcgcacga agaacgtgtc 5220 tgtgcggggc acatacactg acaagaagaa gaagaagaag aagaagaacg ggtctgtgta 5280 gggcccagac accacgaaga cgaacgcaga ggccgggcct actgctggaa acgagctgaa 5340 cgagttcggc tcggacgtaa tcaacttcgt gcagcgcaga caagccgtca ttcggtttgt 5400 ccaagacgct attgcagctt cggtcgaccg acagaagctg aacgcagaca atgttggtag 5460 gggcaacact aatgaattca acaaggattc attggttttg ctagctactc aaaacctgcc 5520 taaacatgca gtttccgact tcggggctcg ttccgtgctt catcgggccg ttcacggtgt 5580 tggtacggca tggcaacgcc tacacgctag atattccatc tagcatgcgc ctccatccga 5640 ccttttacgt cgggcggctg aagccatacc ggcagcacga gccacctagc tcggctggcc 5700 cgaagcggaa gccccagcgg gagcgaacct ctgctcaagc gcgtgaacgc gctggtccaa 5760 gcgcgcgaca cgacccccac gtcgacagag atgtccgacg cggtctgcga gccctgagcg 5820 acttgagccc tcaggatcgc cacctcctgc ttcagagcgg cgaactcccg gctctgatgc 5880 tgttccacag cagcgacccg ctcctcgagc gtcgggccaa ggtcaacccc aggttgacca 5940 tacccggggc gtgttcccac caccgccgcc tccgatccgc gacgcccgcg gctcaacacg 6000 ctggattgtt gatcgtattg tgaaccatag tatcccgaaa acgaaccggc agccggttcg 6060 ttatcgtatt cgttggagag ggtttccgcc ccatcaagat gcatgggagc cacgggacgt 6120 cctgctgtag gacgttccgg aaatggtgag ggcgtacgaa gctcatcacg cactgccgac 6180 gcgtaggtag tgcgagcgct gtagtcacct acagcgcccg aagtcccacg atcgtcgcgt 6240 tcctcacttg ccaggaactt ggcacggaga tctttgagac tggcaggtac acgaatcgtc 6300 gtgtacccgt ttaggccgcg gtcgctcaag cgcaccgcac ccggaagaca caacgtgcac 6360 tgttggcctt cgggcacagc gcatggaata ccagcgtcca cagaggatct gtggagctgc 6420 tccaacctcc cgcgcgtcga gaatgtctcg aagcgttcac gggcatgctt aacccgctcg 6480 cggtaagcag ccggtttctt gaaattctca acaaaagcat accaactttg acaaagtgcc 6540 tgccagtcag gcactttgct gcgagaagag gtcttcttgc tggagaagta tcggagttcg 6600 tgaaagagtc cgatatagta atcgcgcctt tgattcgtta acggatcaaa gtgctgctcc 6660 tccgccacat catcgtcgtg gatgccgctg catacgtaca gcgggatttc atttggaggc 6720 acggtgttgc ccacacggtc tgcgacctct gacgcagccg gcatccacgg atcgcgcgct 6780 gcctgagcag cacgcggaga acttgaagac gccacttcac gcgggagctt aaagtcccag 6840 cagtagagag cggagtgtcg ctctcgccgc gcgaaggctt cgagctcgaa gcgtccgagt 6900 cgtctccttc acgagggcgt ctcgacccgg catgcgggtc gagactatcg ctgtcgatag 6960 actccttgca cttgctagaa gaggcctcgc cctcttccat ctccacgtcg ccgtcctcga 7020 agtcaacggt gtcgttgact acagaggaac cttcgaggac aatctccggt tgagttgtcc 7080 ccgcctcagc cttggcagca aaagcggaac gctttgcttt gtgaccccgt ggacgtcttt 7140 cttcgccgaa tgagggaata ttcgcccgag accagctcgg ctacgacctc aacggagaca 7200 gggacaaaaa cctgcgcacc gaccccagct gaattaacta taccgcctgc aacaacgaca 7260 gcggccatgg gccatggccc atggccgcca cgttgacgac cccacgtacc ctcgagcctc 7320 tgcatatgcc ctcggcagcg ggagaactgc tctctaggcc cgggacggcg ccggatgcga 7380 cctcggtttc ctgcacagtg actgcaacct tgacagacct gctggacacg ggtccactag 7440 ctaacctagc ggcggcaagc accgagaacc cgccgtgtgc gcccgtgtat gcggacgacc 7500 gagacgaacc gatgcagctc ttgccggccg actcgacggc ctcgcgcagc acggatgagg 7560 agatggtgcc cgtgccgacg tgcatcgcga gggtgcccga gcctgcaaca acgacgactt 7620 cgacggatag caacctggag agacctgatg acttactgtg gacattatac tttgacggag 7680 cgtgccgcca ccggtccacg gcgattggag ccgcccccgg tgctggtgcc acgctgtttg 7740 ccggcacagt gaataagtgg acttttgctc gctacctgga tagcacgacg cacactaaca 7800 acacggcaga atacatcgcg ctcatatcag gactgactgg ggccttgcat cacggtgtcc 7860 gccgtctcac ggtgaaaggt gatagcacac tcatactgga gcaggtacgc ggacgctacg 7920 cttgcaacaa cgcgcgccta cggcagctgc gcaaccaggc gcgtcgcctc ctacgccgcc 7980 ttgactacta tgagctggta catgtagatc gactagagaa ccgagacgcc gacagactgg 8040 cgaaccgagc tctcgatggc aggcgcactc ggacagagtg cgctacgcac ggaatggacg 8100 gcgatggcta cagggggcgc ttaacttccg accgactagc ttcaggatcg cgagcaggac 8160 gtgacgctga gcctcgtgag caccccgtcg atgtggagat ggagaatgcc gacgatgaag 8220 cggcggctac tgctgctgct gacatcgtcc gccgcgatcg aggacaaacg tttccagtgc 8280 tgccagtcac cgcttacagc acgccgagcc gccagccaag gttgaaactg cggaacaact 8340 tgactgagcg tgaactcgag gaagcacatg cagcggtaca gcgactcggc cacgagttcg 8400 cggacaagct caccgtg 8417 // ID PIF_Harbinger-3_PI repbase; DNA; PLN; 2333 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-3_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2333 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2333 BP; 627 A; 549 C; 554 G; 603 T; 0 other; taggccacag gctaaaaaag tgaatttttc gtcagttatg tgcatgtacc ttatatagca 60 gtatttgttc acgatacaac gctatctggc gcaaacaata cagtttcaaa tttaaaacgc 120 cataataatt ctaagctgcg atattttcgc atatagctct atcactttta atataactag 180 gctgcagctg taatattcaa gtatacataa cagcgtggta tcattttcaa aaatatgtat 240 ctgaagctag tgcgacatcg tattatctat aatatatctg gttttcgcga aatcctggcc 300 atttaatttg gaaaaaaatc aaagcacaga gaggaagttc agattcactt gtcaattacc 360 aagatgccca gtacagccag ccaagtgttc gaccgcctca accgacagtg ggaggacgag 420 acctccaacc tcgttgttag ccacgagaac tatggcgatg tcgctcgcca tatagaggaa 480 gaagcctccg attctggctc acctattctg tctgagtata ttgcggcagg tggtgatagt 540 gcgctaaagg gcatgaccaa cttctctgcg cccgagctgg atgcgctttg ggctcttgtg 600 gaatctgcgg tgacgattac atggacgcaa ggtcgtgggc gtaaaccgtc tgtgtcgggg 660 aaagacgcaa tgttcattac cctgaccgtg ttgaagcatt ttgacacatg gcagaagcac 720 gcgatcgatt tcaacatcgg gatttctacg ctggagaaaa tggttcaccg tgtcattcag 780 acaattgagc ccgtgctgta ctcccagatg gtcaagcgcg taaggatgtc cgagcagatg 840 gaagctggaa acacctttac aaactatcca catgctctct acgctactga cgtcaagttc 900 cagccagcat atcggcctag cggtcgcttt gcagaacaga aggtttactt ctccggtaag 960 cacaagctct atgggttcaa gattgagtgc tctgtgacac caccaggtgt cgctgttgat 1020 gtttcagatc attctcctgg atcaacgtcg gatctgacga tgatgctcga caggctcacg 1080 attcatcgtc agatgctgcg caaggaggac gggacaactg ctgaaatggg agctgaccca 1140 acgcagtttc cacatatgtg ggccgtgcta gtagacaagg gttaccaggg tgcagggcgg 1200 gtgcttcgaa cgatccagcc aaagaaacaa ccgcgtggag gcactcttga ccgcgacgat 1260 atttcccgca accgtgcaat ttcttcagat cgcgtcctgg ttgagaatta ttttggccgg 1320 atgtgtatgc tgtggaaagc tacctatgcg acctttaagt ggaacgagaa ccgttttgat 1380 ggtgttgctc ggctatgtgt ggcgttgacc aacttccatg taggtttgat gcctctacga 1440 gctcacgaca gcgagcacta cgatatggtg ttgtccaagt atcagtcaat gggcgagcgt 1500 gttcgcaccc agcgtgctag agcccagcgt ctatatcggg ctcggcaaca gcagcgctcg 1560 cgccctggac catatagcgt tcgctctcgc ctatccacat ctcagcgcga gacccaatac 1620 gaatcggacg actccctaaa tcatgctttg taaggcacct tttcccggtc ttattctgct 1680 tgctcctagc ttcctaagac taaagacatt aaatagatta ctgtttgcta tacctctacg 1740 tttgactttc caacttgtcg tcaaaatgga tgtaatcagg ctccgtgcag ctagaaagga 1800 ttaggcagca acttcaaagc ggtaaaaacc acggaagtcg cttaatgcca gttgcccact 1860 aataccacac cacgcgccgt cttaaactcc acaatgcact acaggggtat gcgtgtgacg 1920 ttcacagtac ttcggcccgt cacccccttg gccgattgat ggcaagttgg aaagtgagga 1980 agatgaagtg tctagctgct ttattcgcac ttgtagagta cctgatagtg tataggcaga 2040 acccaggtgt cgttgaaata gaccgactct tgggtagaag cctccataat taaatttttg 2100 ggccacaaat gtagccaact gtttttcata ggatcgtact tatcccagaa gtaacggcct 2160 gagccatgag atgcaaaaat ataaaaaaca gcagggtaca tgcgaaaaaa aagcatgtgc 2220 ttttccaaga atcatgtttt ccggaataag gcatggaatt cgcataaaat tagattttat 2280 gcgaaattaa gcaccatacg ctaagacaca ctttttgaga ctgttatcta ctg 2333 // ID RandI-1_VC repbase; DNA; PLN; 11537 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.02, Created) DT 20-JAN-2010 (Rel. 15.02, Last updated, Version 1) XX DE RandI family of non-LTR retrotransposons - a consensus sequence. XX KW RandI; Non-LTR Retrotransposon; Transposable Element; RandI-1_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-11537 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from green algae."; RL Repbase Reports 10(2), 236-236 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 2% divergent from several CC copies of RandI-1_VC. It codes for a protein composed of the CC cysteine protease, AP endonuclease, reverse transcriptase, and CC RNase H domains. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 87..11396 FT /product="RandI-1_VC_1p" FT /translation="MQSFVLLVLTVFLLGADGRSMTEEGAMDELKGSVRTG FT LLYAPLLDPRPKSMGNIAQPRSVSLVKTTAPQELRDRSTRTNMLGEQDTGI FT LICQNNQARRICSNMNPLKQWQWLGSSSSHISGIFLSKMVGNPRAGSYTTT FT GKHYLPPGDSGILTARGPEPSPTPRAPHSDLCKANRPWNAPPAHYNTRIKD FT AWVLKYFIEKTAVPLDCHTGDPPWQPLNAADRKRNQFPAPYQHYHIDPIHS FT REIGPQDLRPLTAKNTKSPPPSCRLITKHGTKFCSISNAQIITHQNETHRK FT NHTNRTRTDKARATQRRCHPKCKASQYTCTNQHQYTAYKNMAVVPGHFQGR FT PILGSHQGVTISTTRQLSDQHITLLHRNCHVRPNLHAGPRRTDALVKEMHC FT SIAWQSDVCDSIKGWIGGEHKPVSCEGPLQPAETQYGCNSEPVVTHNQTLA FT HHSTRETDGRRTLRDNWKAGCTDNAYPSTGSEKEVWGNRAGETSYQQGHSR FT IISRSTQKLLATSIGDDISTHSPGGIAASTARVIYGRLYRSACTAWTGTRY FT VLAVIALIVCMAVASMGVLCTVRKIYRTTTRRGMNTWKIIPQTSNAVLLMI FT ILWGPLALVIAIWPLDTAISLVVQTTGLIWVIRHFTKRITTCAVPAAIDLA FT LACVVHTADTSYWAYQHPGVIRQMIVSVAALVMLCLHLATAAPMAPILAIS FT IPTIDKGLNLIPELRGHARWLINICLIVGLAIPQNMLVGAAMTLVVTPITI FT TRWNGDSAPEIMRRSEQADSTHCAGPPEETTQTELPCPHASTPTWLLTGPG FT TPPKQVTWPITTNPHNSDGSLYHEQQQKELCMIHAINNLLGGPYINPQHVL FT QYCRAMLQHMADRGLHNAAATWRLTHNQNTGNFSTLAINPYLRYNVPVRTA FT QQRNDPAHPHVASIGSGQEIKPNATLSSVLHQLPEHARNWGFIVHLTGHAI FT AVRKHKDRWYIHDSLQPKPVELGDENATWPRETGAIYTLNLRHHTEPTATH FT VDLRDITPPDTWMCTAHTENTEIQTTPNGTTRTTTRVPQGQKRRKIKHLRA FT VQLTHQTMRTLTEPPGTWIPPQPTAHDNDHRPATNPIVAPLPPPLEEDSRE FT RPHQKRHTGHTGITLPRPRDTTTGAPRTTGTRIRAKPPRTLPTDAQCNRPK FT PPTIMDHLRRWANKRTNPAEADHPGKTIHTTRENGNASEPNVKRPRLSTTP FT VNNNTSPHPENANPSEHCNKTDPRYLHIVTHNVRGLATNFLSTLCNMQTWA FT ADIIVLTETKTGNRTRWMKDAVRKEPQGYRLYCSSKPRSSGKDRYSAGVAI FT AIGARYTRAGQVTHISPPPLLQGYLCHCKISTSASTPLHVLGIYCPENTLV FT RTTIYAHCRTVLRQAKSNGEHVALAGDFNAVLNPDDRSTGLLDTADRLHLK FT FVTDNTLTPVPENCSPRHPSFKQWIQECCTHQSRIDDILMCPTLHASVKAE FT TPANGNTPQAYCNVSVAGGNFDHNPVHARLPADAIRLWDAKKPAAPNNPDG FT DGARTKWKNVILPVPNSTIRAAQSKMDASLTSDILSLQEYLRPAVQEIEAG FT LAKHIEDPTDMTATRLMTLLRGHDSITAVNVEIAAAMLQTTLDKGLDILLD FT LCPQKPPCTGKIHTKRTVSRGLKKLHREHTRLKHDYEMELRMQAAPGCQQP FT VCADSSTSPNGLASNGNHAPPEGAGGLLEQLRDTIRRVGSQIRQALTTERR FT KSITAARRRTQHLIATRPRRAHQGIFSKDELERGLPAVKHPVSGKICTEPE FT SILEAVHQYFQTQAAPIGPPKTGRYRPEETPRAYPFLQSAAPDTFSLTSPK FT QAADHVLLSSVADPFNFNKCVQHLARNKTPGPDGIPNELLRALPTALQSTI FT HDLLKVMWAQARTPKQWTESVTVLLPKAGDALLLNNKRPIALANTLYKLWT FT SLVTVSIGDVAPELALFSEAQEGFLRYRNTERQIQNLLHVIEDAGLTRKDL FT YLLYVDFSSAFNTINHDLLLQIMYDLGLPEDLIYVVRDLYSQARTTIRTEH FT GLTAPIMIERGTVQGDTLSPVLFIIFLEPLLRWLHAGGRGYKYGCLPDSLN FT ARYHGSSAAYADDLAVMTNSAQDLQIQCDKISLYSKWAGLHVNHKKCAVTG FT ILHHRAWADRGLNGPTCARTLKAALDEKIKISDQSVPYLPPTEPYKYLGVH FT VTLTLNWSAQMSHVCKAVRDKGDLLQGSLASPDQCIRIIQTCIQAVVSYSF FT STMAYTPNDIRLLDAMIARAARRCYRLPTSFPTRAVLLPVEQYGLGVGSLL FT PIYVRMAARALVLSLNDEGRLGVVTRAMLELQCRLAADTRMHTLKRESSFY FT TTLKQLTLARDHGIAVTDKGMPYNTSLNTLMTAASAVNARQDTKSETLPYR FT CLLPLTELGLDMHALIDKNTTQHLITTTDLQKLFPRGKVQHRHKIALNRLS FT LAISAQCPQAPHTKAHDPRRWSSALPLEDRRLREIPSDPPYTGLRHKSSLP FT NPILAPSLDPHVRRDTPVVWSTTTEKPHHPRAEPDDMESDPPAPPSHPAEP FT ACTGRKRTRSVHQRQQDFINNNTRCDNSNVGTDSAAIHGVQLRDPAPQCTS FT YMETRRVMAALRKDTRRSVPNLGNPPGPIVQGPRPRPSRQTRRTLSIGMTP FT VTGEIGTPNPVLVYLAEKGLDCTPVAPRNPRAGAGAGAARAGPNTADRDHA FT GDPPAPEPAGALPGTPKPPEHLTPQWWRPRWKVARDQILEDRIPWKPGKGQ FT AKDTTGQQQIVYDLYNDVEDIVEVLAGPITKRIVPSNVKPPKKQKIGADTT FT ATHEQYYTVRWKDTITPISIVGAYASMGYVPRQLLPVTGLYGTRIDRHFRR FT AVWEPSDIPAAQLGRLPNGPAAMARYEQTRSQSVNPLSRYPKPKDSNLTNP FT QRQGRWNPPPSEQTQRARLIRANTTFETAPCNPYMDTRPTGNYRIQLGLLT FT REGGSTEGNTAFVYDPRGKCVGTLTLQRLETLRMRYQHTIDTYPEVHRSLS FT SQGGFAEDVARLLLRYGKDPDGRETKGPPRSQATMSRKLRCTLIDALHALD FT AGPVVERFSSPLNCGEEVQYYFSVHAEDQLFGANIDAFSQPFTGLSIAHPN FT PDPTSVKKAVMWAVAGASHTMTSALPTATLLIVPHSRTGPHTQLHNTPYVF FT QLARLSRGEACKLTSGTGTDGPTPDYKGGLDLVVVANDTAIRGLNARSMKA FT LLSELEAMDATGLPRKHLRLRDMSAGTHCVGTQRPYPNKVAQVMRKMNASK FT PPRPRPTATVPHSDGQMLQQRLTAAFPGQVPLRMDPHTIIWTDGSCIKSAE FT NDGQNKLGAAAYCGPTGKTLHIDPAGEGCTNTIQRAELAAIRVALSTQRAV FT NITLTIATDSQASLDLIKRAVNDPSKLHISKHKALLMDIADLLYECAQQNI FT TVHFLKVKSHTGLDGNDKADKGATSVARGENPATFTEKADNAPFDKVFWLK FT QRDTGLYVSDLNKGLYKRLQQGTFAGYTNDTILTEKWRNTASKLDPKSSNS FT FLSNAKMXHWLKLQVLKARYGLLFNAKLKKLYGRGGDGNCPICRSCGPTGP FT TPDSGAHILGGCPHPTMKGMYINRHNQATRTIADCVNGGHHGGGFMIMDAG FT KEEDLPPYCSGTRVPKWMLPHLADEEIRRLRPDIMFIPDLPAHRTKRKRYQ FT GPECKSKHDVYIVEVGYTSDLQHSDKLEQKTAQHARLTEELTKAGWTVHYT FT EAQIVTLGSTGTLTNTLKPLLCRLGSSAEQAQKTCLHLHRQTIEAAGTIIR FT ARRVLEGTVK" XX SQ Sequence 11537 BP; 3136 A; 3722 C; 2814 G; 1863 T; 2 other; aattacaact acgcgcctag tcaagccgct ctgggggagt gaaagtaagt tgtgcacttc 60 gcggtaagca cggtttgcag gcaacaatgc aatcgttcgt attgcttgtt ctaaccgtgt 120 ttcttttggg cgccgatggc cgctccatga ctgaggaggg ggcaatggat gagcttaagg 180 gctcggttcg gaccggcctg ctctacgcac cattgcttga ccccaggccg aagtctatgg 240 gtaacatagc gcaaccaaga tcggttagcc ttgtgaaaac aaccgcacca caggaactcc 300 gtgacagatc cacccgaacc aatatgctgg gcgaacaaga caccggcata ctgatatgcc 360 agaacaatca agcgcgtagg atatgctcta atatgaatcc tctgaaacaa tggcaatggc 420 tcggtagctc gagttcgcac atcagcggaa tctttctgtc caaaatggtc ggcaatccac 480 gagctggcag ctatacaacg actggaaaac actacttgcc cccaggcgac tcgggcatac 540 ttacagcaag gggccctgag ccctcgccta cacccagggc tccgcattct gatctttgca 600 aagccaaccg cccctggaac gctcccccag cccattataa cacacggatc aaggatgcct 660 gggtactaaa atactttata gaaaagacgg cagtgccctt agactgtcac accggtgacc 720 caccatggca gcccctcaac gcggcagacc gtaaacggaa tcaatttcca gctccatatc 780 agcactacca tatagacccg atacattctc gggagatagg gccacaggac ctaagacccc 840 tgactgcaaa gaacacaaag tcgcccccac catcctgtcg actaataacc aaacacggta 900 caaaattctg tagtatatca aatgctcaga tcataacaca ccaaaacgag actcaccgca 960 aaaatcatac caacagaact cgtaccgaca aagcacgagc gacgcaaagg aggtgccatc 1020 cgaagtgcaa ggcgagccaa tatacttgta caaatcaaca tcagtataca gcttacaaga 1080 acatggcggt agttcctggc cactttcaag gccggccgat attgggcagc catcagggcg 1140 taacaataag cactacacgc caactgtctg accaacacat caccctacta caccgtaatt 1200 gccatgttcg cccaaaccta cacgccggcc cgcgccggac agatgcgcta gtcaaggaga 1260 tgcactgtag tatagcttgg caatctgatg tgtgtgactc gatcaagggc tggatagggg 1320 gggaacacaa gccggtatcc tgtgagggtc ccctgcaacc tgcagagacg cagtatggct 1380 gcaactctga acctgttgta acccacaacc aaactctagc acaccatagc actcgtgaaa 1440 ctgacggccg taggaccttg agagacaact ggaaggcagg gtgtacagac aatgcgtacc 1500 caagcacagg ttcggagaaa gaggtatggg gcaacagagc aggcgagacc tcgtatcaac 1560 agggccactc gagaattata tctcgcagca ctcagaaact cctggcgaca tcgattgggg 1620 acgacattag tacacactcc ccgggcggaa ttgcggcatc tacagctagg gtcatctacg 1680 ggcgtctgta ccggagtgcc tgtacagcct ggacaggcac tcggtacgtg cttgccgtaa 1740 tcgctctcat tgtctgtatg gctgtagcga gcatgggagt cctgtgtacc gttcgtaaga 1800 tttacagaac caccactcgc cgaggtatga acacgtggaa aataatacct cagactagta 1860 acgcagttct actcatgatt attctttggg gccccctagc actcgtgata gcgatatggc 1920 ccctggacac tgcaatctcc ctggtagtgc agacgacagg attgatttgg gtaattcgac 1980 acttcactaa acgaataact acctgcgccg taccagcagc catcgacctc gctctcgcct 2040 gtgtggtcca tactgctgac accagctact gggcatacca acacccgggg gtgattagac 2100 agatgatagt gtcagtggcc gcgctggtca tgttatgcct acatctcgcc acagcagccc 2160 cgatggcccc cattctggcg atcagtatcc ccactataga taaagggcta aatctcatac 2220 cggagctgag gggacatgcg cgctggctga taaacatctg cctgatagtc ggcctggcga 2280 taccgcagaa catgctggtg ggcgccgcta tgaccctcgt cgttacaccg attacgatta 2340 ccaggtggaa tggagactcc gcccctgaga taatgaggcg ctctgaacaa gcggacagca 2400 cccactgtgc gggcccacca gaagaaacca cacaaaccga gctaccctgc ccccacgcca 2460 gcacgccaac atggctgcta acaggacctg ggaccccacc aaaacaagtg acgtggccaa 2520 taacgacaaa cccgcacaac tcagacggct ctctatatca cgagcaacaa cagaaagagc 2580 tctgcatgat ccacgccata aacaacctac tagggggacc gtacatcaac ccacaacatg 2640 tactgcagta ctgccgtgca atgctacagc acatggccga ccggggactc cacaatgcag 2700 ccgccacgtg gcgactaacc cacaaccaaa acaccggcaa cttctcaaca ctggcaatca 2760 acccgtacct ccgctacaac gtgccggttc gaactgcaca gcaaagaaat gaccccgcac 2820 acccgcatgt cgcctccata gggagtggac aggaaataaa acccaacgcg acgttaagca 2880 gcgtacttca tcagctgcca gaacacgcac gcaactgggg cttcatcgta cacctcacag 2940 gccatgcaat cgcagtacga aagcacaagg atcggtggta cattcacgac tctctgcaac 3000 cgaaacctgt ggaactcggt gacgaaaacg ccacgtggcc acgtgaaacc ggcgcaatat 3060 acaccctaaa cctccggcac cacacagaac ccacggcaac ccacgtggac ctgagagaca 3120 taaccccccc ggacacctgg atgtgcacag ctcacaccga gaacacggag atccaaacaa 3180 cacccaacgg gaccacgcgc acaacaacga gggtaccaca aggccaaaag cggcggaaga 3240 tcaaacacct gcgtgcagtg caactaaccc atcaaacgat gagaacacta actgagccac 3300 caggaacgtg gataccaccg cagccgactg cacacgacaa tgaccaccga ccagcaacca 3360 atccgatagt cgcgcctctc ccacccccct tagaggaaga ctcgcgtgaa cgcccccacc 3420 aaaaacgaca taccgggcac actggaatta ccctcccgcg gccacgcgac accacaactg 3480 gtgccccgcg aaccacggga accaggatac gagccaagcc gccgcgtacc ctacccacgg 3540 acgcgcaatg caacagaccc aaaccgccga cgatcatgga ccacctccgg cggtgggcca 3600 acaaacgtac caacccagcc gaggctgacc accccgggaa aacgatacac acaacaaggg 3660 aaaatgggaa cgccagtgaa cccaacgtca aacgcccaag actgtcgacc actcccgtaa 3720 acaacaacac atctccccac ccggagaatg caaatccctc agaacactgc aataaaacgg 3780 acccccggta cctgcacatt gtcactcaca acgtgcgagg actggcgacg aacttcctca 3840 gtacactgtg caatatgcag acttgggctg ctgatatcat tgtcctgacg gaaaccaaaa 3900 ccggcaaccg caccagatgg atgaaggacg ccgtacgcaa agaaccgcag ggatacaggc 3960 tctactgcag ctcgaaacca cgtagctctg gcaaggatcg ctactcagca ggtgtagcaa 4020 ttgccattgg tgctcgttac actcgtgcag gacaagtgac gcacatatca ccgccgcctc 4080 tgctacaagg gtacctgtgc cactgcaaga tctccacgtc agcaagtacc cccttacacg 4140 tgctgggaat ctactgtccg gaaaacaccc tagtccgaac caccatatac gcgcactgcc 4200 ggacagttct aagacaggcc aagagtaacg gggaacacgt agccctggcc ggagacttca 4260 atgccgttct gaaccctgac gaccgcagta caggcctgct cgacacagca gaccgactac 4320 acctcaaatt cgtcaccgat aacacgctca caccggtccc tgaaaactgc tccccccgcc 4380 acccgtcctt caagcagtgg atccaggaat gctgtacaca ccaaagccga atagacgata 4440 tcctgatgtg ccccacccta cacgcgagtg taaaagcgga gacacccgca aacgggaaca 4500 cgccacaagc gtactgcaac gtttctgtcg ccggtggaaa cttcgaccat aatcccgttc 4560 acgcccgcct gcccgccgac gccatccgcc tgtgggacgc caagaaaccg gcagccccaa 4620 acaacccaga cggagacggg gcccggacta aatggaaaaa cgtgatacta ccggttccga 4680 attccactat ccgcgcagcg caatcgaaga tggatgcctc gctcacgtcg gacatcctca 4740 gcctccagga atacctccgc cccgccgtcc aggagattga ggctggcctc gcgaaacaca 4800 tcgaggaccc cacggatatg acagccaccc gcttgatgac actacttcgc ggccacgaca 4860 gcatcacggc ggtcaatgtg gagattgcgg cagcaatgct ccaaacaacc ctcgacaagg 4920 gactagacat cctactagac ctgtgccctc agaaaccgcc atgtacgggc aaaatacaca 4980 ccaaacgaac agtcagcaga ggactaaaaa agttacacag agaacacacc cggctcaagc 5040 atgactatga aatggaacta cggatgcagg ccgcccccgg atgccaacag ccagtttgcg 5100 cggacagctc aacaagccct aacgggctgg cttcgaatgg caaccacgca cctcctgaag 5160 gtgccggggg cttgctggag caactacggg acacgattcg acgggtcggt agccaaatac 5220 ggcaggcgct aacaacagaa cgccggaaaa gcataaccgc agcgcgccgc cgaacccagc 5280 atctgatcgc cacacgccct cgacgggccc accaaggcat cttcagcaag gatgaactcg 5340 aacgcggcct acctgcggtg aaacacccgg tctccggtaa aatatgcacg gaacccgaat 5400 ccatccttga agcagtccac cagtacttcc agacgcaggc cgcccccatt ggccccccga 5460 agaccggacg gtaccgaccc gaggaaaccc ctcgagcgta cccatttctg cagagtgccg 5520 ccccagacac gttctccctt accagcccga aacaggccgc ggaccacgtc ctgcttagca 5580 gcgtcgccga cccttttaac tttaacaagt gtgtccaaca cctggcccgc aataaaacac 5640 cggggcccga tgggatacct aacgagctac tgagagcatt gcccactgcc ttacagtcca 5700 ccatccacga cctcctgaaa gtcatgtggg cccaggcccg cacgccaaag caatggactg 5760 aatccgttac ggtccttcta ccaaaagcag gagatgcgct cctcctgaac aacaagcgac 5820 ccattgccct cgccaacact ctttataagt tatggactag cctcgtcaca gtgtccatcg 5880 gggacgtcgc tcccgaactc gcgttgttta gcgaggcgca agaagggttc ctccggtaca 5940 gaaacacgga acggcaaatc caaaacctgc tccacgtcat tgaggatgct gggctcacac 6000 gcaaagatct ctacctgcta tacgtcgact tctcctcggc attcaacacc atcaaccacg 6060 acctgctgct acagatcatg tacgacctag ggctacccga ggacctcatc tatgtcgtac 6120 gggacctgta cagccaagcg cggaccacta tacggacaga acacggcctc acagcgccaa 6180 taatgatcga acgaggcaca gtacaggggg acacgctctc gccggtgcta ttcattattt 6240 tcctcgaacc actcctccga tggctccacg ctggcggacg agggtacaag tacggctgcc 6300 tccccgacag cttgaacgcc aggtaccatg gaagctcagc cgcttacgcc gacgacctcg 6360 ccgtgatgac caacagcgca caagacctac aaatacaatg cgacaagatc agcttgtact 6420 cgaaatgggc gggcctacac gtgaatcaca aaaaatgcgc agtgacgggc atcctgcacc 6480 acagggcatg ggccgaccga ggcctgaacg gacccacgtg tgcacgcacc ctcaaggcag 6540 ccttggatga aaaaatcaaa atcagcgacc agtcagtgcc gtacctaccc cccacggaac 6600 cctacaagta ccttggggtc cacgtaacac tgaccctcaa ctggagcgca cagatgtccc 6660 acgtctgcaa ggcggtgagg gacaagggcg acctacttca gggatcccta gcatcgccgg 6720 accaatgtat cagaatcata cagacttgta tacaagcggt agtgtcatac agcttctcca 6780 ccatggcata cactcctaat gatatcagac ttttggatgc gatgatcgca cgcgcagccc 6840 gacgctgcta ccgcttgccc accagttttc ccacacgcgc cgtgctgcta ccggtggaac 6900 aatatggact cggcgttggg tccctgctac cgatctatgt gcgcatggca gctcgcgcgc 6960 tggtcctctc cctgaatgat gaaggccggc taggcgtcgt gacacgagcc atgcttgagc 7020 tgcagtgtcg tctggcggcc gacactagga tgcacacgtt gaaacgcgag agcagtttct 7080 acacgaccct gaaacagctg accctggcgc gagaccatgg catcgcggtc accgacaaag 7140 ggatgccgta taacacatcc ctaaacactc tcatgacggc cgcctccgcc gtcaacgcgc 7200 ggcaggacac aaagtccgaa accctgccgt acagatgctt gctccccttg acagagctgg 7260 gcctagacat gcacgcgctc atagacaaga acacaacaca acacctcatc accaccactg 7320 atcttcagaa gcttttcccc cggggcaagg tgcagcaccg gcacaagatc gccttgaatc 7380 gactaagcct agcgataagt gcccaatgcc cccaagctcc acacacgaag gcacatgacc 7440 cacgtcgctg gtcgtccgcg ctgcctctgg aagacagacg cctccgcgag atccccagtg 7500 accctccgta caccggcctc cggcacaaat caagtctccc caacccgata ctagcaccat 7560 ccctcgaccc acatgtacgc cgtgacacac ctgtcgtgtg gagcacgacc acggagaagc 7620 cacaccatcc ccgcgcagag ccagacgaca tggagagtga cccaccagcg ccgccgagcc 7680 accctgcgga accagcctgc acaggacgga aacgcacaag atccgtccac cagcggcaac 7740 aggatttcat caacaacaat acacgctgtg acaacagtaa cgtgggaaca gatagtgcag 7800 ctatacacgg cgtgcaactc cgcgacccgg ccccgcaatg cacatcctat atggaaacga 7860 gacgcgtcat ggcagctctg cgaaaagaca cccgtaggag tgtgcccaac ctagggaacc 7920 cccctgggcc tatcgtccag ggaccgcgac cgcgcccaag ccggcaaacc cgtcgcactc 7980 taagcatcgg catgaccccc gtgacaggag aaatcggtac cccaaaccca gtgctggtgt 8040 accttgcaga aaagggactc gactgtacgc cggtagcgcc acgtaaccct cgcgccggcg 8100 caggcgcggg ggcggcaagg gccggcccga acaccgccga cagggaccac gccggtgatc 8160 cgcctgcgcc cgaaccggcc ggagcgctac cggggacgcc gaagccacca gagcacctca 8220 ccccgcaatg gtggagacct cgatggaaag tcgcccgcga tcaaatactg gaggacagga 8280 taccctggaa gcctggaaaa ggccaggcaa aggacacaac ggggcaacaa cagatagttt 8340 atgacctata caacgatgta gaggacatcg tagaagtact cgcgggccct atcacaaaac 8400 gcatcgtccc ctcaaacgtt aaacctccca agaaacagaa aatcggggcc gatacgaccg 8460 caacccacga acagtactac acggttcgct ggaaagacac tatcaccccg atatctatcg 8520 tcggcgcata cgccagcatg ggatacgtgc ccagacagct attaccagtg acaggtcttt 8580 acggcacgcg gatcgaccgc cacttccgca gagcggtatg ggaaccgtca gatatccccg 8640 ccgcgcaact cggtaggtta cccaacggac cagcggcgat ggcgaggtac gagcaaacga 8700 ggtcgcagag cgtgaacccc ctctcgagat accccaaacc caaggacagc aatctaacga 8760 accctcagag gcaaggccga tggaacccgc ccccctcgga gcagacccag cgggcacgcc 8820 ttattcgagc aaacactacc tttgagactg cgccgtgcaa cccatacatg gacacgcgcc 8880 ccacgggaaa ttatcgaatc cagctaggtc tgctaaccag agagggcggc tcgaccgaag 8940 ggaacacggc cttcgtctac gacccgagag ggaaatgcgt gggcaccctc accctgcaac 9000 gcctggagac cctcagaatg cgataccaac acacgatcga cacttacccg gaggtgcaca 9060 gaagcctgtc ctcccagggc ggcttcgccg aggacgtcgc gcgccttctc ctgcggtacg 9120 gaaaggaccc cgacgggcgc gaaacgaaag gcccgccacg gtcgcaggcg accatgagca 9180 gaaaactgcg ctgtacgctg attgatgccc tgcacgccct ggatgccggc ccagtcgtcg 9240 aaaggttctc atccccgctt aactgcggtg aagaggtgca atactacttc agtgtccacg 9300 cagaagacca actcttcggg gcaaacatag atgcattctc tcagccattt acaggcctct 9360 cgatagcaca cccgaaccct gaccccacca gtgtcaagaa ggcagtaatg tgggcagtcg 9420 caggcgcatc acacacaatg acatccgcac tgcccaccgc cacactactc attgtcccgc 9480 acagccgaac tggcccccac acgcagctac acaacacacc gtatgtcttc cagctcgcgc 9540 ggctgagccg cggtgaagcg tgcaagctta ccagcgggac tggaactgac ggccccaccc 9600 ctgactacaa ggggggcctg gacctcgtcg tggtggccaa cgacacggcg atccgaggac 9660 taaacgcccg atccatgaag gcgctcctat ccgaactcga agcgatggac gccaccggcc 9720 tccccagaaa acatctgcga ctgcgggaca tgtccgcggg tactcactgc gtcggcaccc 9780 aacgacccta cccaaacaaa gtcgctcagg tcatgcgcaa gatgaatgcc tcaaagccgc 9840 ccagaccaag accaaccgcc acagtccccc actcggacgg acagatgctc cagcagcgcc 9900 tgacagcagc ttttcccgga caagtaccac tcaggatgga cccrcacact atcatctgga 9960 ccgacggtag ctgtattaaa tcggctgaaa acgacggcca gaacaagttg ggtgcggctg 10020 catactgtgg acccaccgga aaaacgctgc acatcgaccc agcgggcgaa ggatgtacga 10080 ataccattca acgggcagag ctggcagcaa tacgcgtagc tctatcaacc caaagggcgg 10140 tgaacatcac cttaacaatt gccactgact cgcaagcctc actggatctt atcaaaagag 10200 cagtaaacga tccgagtaaa ctgcatattt ccaagcacaa agccttacta atggacatcg 10260 ccgacctact gtacgaatgc gcccaacaga acataaccgt tcacttcctg aaagtgaaat 10320 cgcacacagg ccttgatggt aatgacaaag ctgacaaagg agcaacatct gtcgcacgag 10380 gtgagaaccc agcaacattt actgaaaagg ccgacaatgc cccgttcgat aaagtgttct 10440 ggctgaaaca acgcgacact ggtctttacg ttagtgacct gaacaaaggc ctttataagc 10500 gtctccagca aggtaccttc gcaggctata ccaacgacac aatactaact gaaaaatggc 10560 gtaacaccgc ctcgaagtta gaccccaaat ctagcaattc cttccttagt aacgcaaaga 10620 tgycacactg gctcaaactg caagtactga aagctcgata cgggctgcta tttaatgcta 10680 aactaaagaa actttacgga cgaggcggag acggcaactg ccctatctgc cgcagctgcg 10740 gcccgaccgg ccccacaccc gactcaggag cccacatact cggcgggtgc ccccacccaa 10800 ccatgaaggg catgtacatc aaccggcata accaagcgac gcgcactatt gccgactgcg 10860 tcaacggggg ccaccacggt ggtggcttca tgattatgga cgccggtaaa gaagaggatc 10920 tcccgccgta ctgcagtggg acgcgcgtcc ccaaatggat gctgccacac ttagcggacg 10980 aggaaatccg tcgcctccgc ccagacatca tgttcatccc cgacctcccc gcgcacagaa 11040 ccaagcgcaa acggtaccag gggccggagt gcaaatccaa gcacgatgta tacattgttg 11100 aagtgggcta caccagtgac ctgcagcact ccgacaaact cgaacagaaa accgcacagc 11160 atgcacggct aacagaggaa ctcacgaaag caggctggac ggtgcactac accgaggcgc 11220 aaattgtcac cctgggaagt actgggacac taaccaacac actaaaaccg ctactgtgca 11280 gactcggctc gtccgctgag caggcccaga agacctgcct gcacctccac cggcaaacaa 11340 tcgaagcagc gggcacgatt atccgggcgc ggcgagtact ggagggtaca gtcaagtaac 11400 cggtacaacc cgaacggttt cccacggtgg tgcgggcata caggagcggc tacgccgccc 11460 ctcagttccc caccccctta acacacgcca ggccccggcc ggcgtactat tattattatt 11520 attattatta ttattat 11537 // ID Copia-9_PR-LTR repbase; DNA; PLN; 194 BP. XX AC AAQX01001520; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PR_; KW Copia-9_PR-I; Copia-9_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-194 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001520; Positions 49525 49332. XX SQ Sequence 194 BP; 65 A; 40 C; 46 G; 43 T; 0 other; tgttaagagg ctgtgtgatt ggccaaatat ataaccaatg gaaaagcaca agacatctta 60 cttaataagg gtacttacta agtaagccaa aaaacttgcc gagggatgtt agtggagagg 120 aggacgcgtg gcaaagtgcc cgccttgaat gtcctcctca cttccgaact gacggcttac 180 acaaaagcat aaca 194 // ID Gypsy-54_PIT-I repbase; DNA; PLN; 4564 BP. XX AC AATU01004924; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_PIT_; KW Gypsy-54_PIT-LTR; Gypsy-54_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4564 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004924; Positions 168195 172758. XX CC Positions [3426-3923] - Integrase core CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 1216..3126 FT /product="Gypsy-54_PIT-I_1p" FT /translation="MMLCHEKVHINLQIVTAAGPLALTNIECLVLDANEEE FT LLLGRTTLQSIDVDFDDVFERLAQQHIDAAEAEADDVPSDYVDVLGAEADA FT EVEPVLQQLVDEAVEAGSDAAHADNLRRIVVDYADIFRLRLGQDEPADVEP FT LEVRLEPGAEPYRSGARHYSEAQRQFLREYVRELEEAGLVVRNNQSRWSCP FT ALPVAKGNSGEYRITIDCRPVNRKTIPLAGASPNLAVAMKSARDAYGLGAF FT DFHKGFWQMPLHPDSRGFFSFVTEEVVFTPTRVPQGATDSAVHFQAQMSDI FT LKDLLPRSVLVWIDDVLLYARSAGDFLENLERFFAILRQRKLKLNAKKCKI FT FAKRVKWCGKLIDGEGVAHDHERLAALRQMPIPPTGAALQHFLCALNWLRD FT SMVDYARITATLQEKLKQVMRVRGRLKAQRSGASLDWNEAEAAAYRETLTM FT VERSCKLVFPDQAATVCMFTDASRTGHALVLTQVRRWQDDVPVEEQQHELL FT VCRGGLFKGAQQNWSIVEKEGYPIVKACGDLDYMLVREKGFHVYCDHSNMI FT RLFSPDHEVKQHVKGKLQRWALTLVGCRYVIHHIAGENSLWANIVPRWGQP FT AAAATDTMLAVKRVTTRSAQTLSELVHPRTESSPGLLGM" XX SQ Sequence 4564 BP; 992 A; 1200 C; 1422 G; 950 T; 0 other; taaagaattc tttgacaaca acaagcatcg catcgccatg ccgggcatga aggacgatta 60 cgagtacgac acagaaggcg acgtcaagat ggcggtgccg cagcccatct tcgaggtgac 120 gagggctcca agtctcaagg tctggagtca gtcagccatc acggccttcc ttcgagaggg 180 gaagcagctc gaggggaagg ttcttgagca gtgccgtgtc acgggcgaag tccaagcagc 240 cgtgacgcga agcatccgct cgacgtttga acccagggtt cttgagcacg tagctcacta 300 catcctgaag acggatgccg ccagcgtgtc ggacgacatg ttggtgaccg agatgaagag 360 gatggtgggc acgatgatga acgaccgtgt ccccgacgtc aagcagcttt ttgcgcggga 420 gttgaaaata gaccggtcgg aggtggacgt cgaggctagg atcgccacct acttcatgaa 480 gtttgagctg gtcgaagaca gcggcctcgc tggtatgctt ggctgagagg tggctgtcga 540 cgagcaaggc cgccagcgga tgaagctacg gtgtaagctg ctgctcagca gtgtgacacc 600 agcgatgctg aaggtcgact tgaccaggct ggtcgagatg acccaccgtg aagcgaaaat 660 gaatgaccta gctttgcacg acctgatgat cgagcgagcg acacggcagc agcagtatca 720 cctcatgcaa gctgagatga agcagactgc tggtgaccgt cccaaggaga cgtctgtggc 780 ggccgcgaag agttcgcagc gtcagtcgaa gcagaatcag cgtcactcga acgcctcagg 840 agacagtcac actgcggagc gtggtgctgg tgagcagcga aagcctccgc gcgatggatg 900 tttgatctgc aagggtactc actgggctcg tgactgcccg accgcaactg cagaacagaa 960 ggctgaagtg gtccagaagc tgcgtgagaa gcgcggccgt caacctgaac gagtcaagcg 1020 tgttactgcc gatgacgagc cgacattcgg accgcagtta tcaatggcgt gctggacgta 1080 cctttctgcc ccgacacggg ctcggatgcg atcatcatcg gcaggcctgt gctggaagag 1140 ctacgcgacc tggtggccaa cctgcctgtt gagcacgttg atccgccagt tagggtggtt 1200 gtggccggtg gcagcatgat gctgtgccat gagaaggtgc acatcaacct tcagatcgtg 1260 accgcagccg ggccactggc tttgacgaac atcgagtgtc ttgtgctgga tgcgaacgag 1320 gaggagctgc tactgggcag gacaacgctg cagtcgatcg atgttgactt tgacgacgtg 1380 tttgagcgac tagcccagca gcatattgac gcagccgagg cggaagctga tgacgttccg 1440 agcgactacg tggacgtgct gggggctgaa gcggatgctg aggtggagcc agtgctgcag 1500 caacttgttg atgaggctgt tgaggccggt tccgacgcgg ctcacgcgga taatctccgt 1560 aggattgtgg tcgactacgc ggacatcttc aggctccgtc ttggtcaaga tgagcctgcc 1620 gatgttgaac cgttggaagt gcgccttgag ccgggtgctg agccgtatcg cagtggggct 1680 cgacattact cggaggccca acggcagttt ctacgggagt acgttcgaga gctcgaggag 1740 gccgggctgg tagtgagaaa caaccagagt cgatggtcat gtcccgcact gcccgtagca 1800 aagggtaact cgggtgagta tcggatcacg atcgactgca gacccgtgaa ccgcaagacg 1860 attcccctgg ctggtgcttc accgaacctg gcggtggcaa tgaaatccgc tcgagatgcc 1920 tacgggctcg gagcgtttga ctttcacaag ggcttttggc aaatgcctct acaccccgac 1980 agccgggggt tcttcagttt cgtcacggag gaggtagtat tcactccgac acgcgtgccg 2040 cagggcgcca ctgactctgc agttcatttc caggcacaaa tgagcgacat tctgaaggac 2100 ttgctgcctc gcagcgtatt ggtgtggatt gatgacgtgc tgctctacgc acgatcggca 2160 ggagacttcc tggagaacct cgagcggttt tttgctatcc tgaggcagcg caagctgaag 2220 ctgaacgcca agaagtgtaa gatctttgcg aagcgtgtga agtggtgcgg aaagctcatt 2280 gacggtgaag gtgtcgccca tgaccatgag cgactagctg ctttacgaca gatgccaata 2340 ccgcctactg gggctgcact gcagcatttc ctctgcgctc tgaattggct aagagactcg 2400 atggtagatt acgcccgcat cactgcaacg ctccaagaga agctgaagca ggtgatgcgc 2460 gtccgtggac gcctcaaagc gcaacgtagt ggcgccagcc tggattggaa tgaagccgag 2520 gctgcagcat atcgggagac gctcaccatg gtggagcgct cttgcaagct cgtgttcccc 2580 gaccaggccg ccaccgtctg catgttcaca gacgcatcgc ggacgggcca cgcgctcgtg 2640 ttgacgcagg tacgccgttg gcaggacgat gtacccgtgg aggagcagca gcatgagctg 2700 cttgtctgtc gtggtgggct tttcaaggga gcgcaacaaa actggtctat cgttgagaaa 2760 gaaggctacc caatcgtcaa ggcttgtggc gatctcgact acatgctggt ccgagagaaa 2820 gggtttcacg tgtactgtga tcactcgaac atgatcaggc ttttctcgcc agaccatgag 2880 gtgaagcaac atgtgaaagg gaagctgcaa cggtgggcac tgaccctggt cgggtgtcgc 2940 tatgttatcc accatatcgc tggtgagaac agcctgtggg ccaatatcgt gccccgttgg 3000 ggacagccag cagcagcggc tacggatacg atgctagcag tcaaacgagt gactacccga 3060 tctgcgcaaa ctctatcgga gcttgtccac cccaggacgg agagttcacc tggcctactc 3120 ggaatgtgat tgctgtggca cagcgttcgt gtaagcagga tgcaccgcca gccaccgcaa 3180 tggacgatgg agcacttacc gtgaacggcg agctgtgaat gccgtcgaag gcgaaagcgc 3240 tgttgaagcg cctgctcgtg attgcccact gcggaatgca aggccaccgt gtcatccacg 3300 tgatggtcga gctactcgat cgtcattttt tgctgtcaaa cactcggcag gtggtgactc 3360 gtttcatcaa tgagtgcctg ctgtgcaagc acgtgaaagg tggtgctctt atccagcgcg 3420 actggacggt cgatagacct gtggcctctc gtaacgagtg catgcacatg gactatcagt 3480 acctcggaga aagctacggt gaggccaagt acgtccttgt cctgaaggac gagttgactc 3540 acttctgtga gctcgtcgct gcggactcgg ccaatagcca gacggctgtg gcggctgtgc 3600 tggactggca caagcggttc ggcatcccca cgatgtggat gtcggacaac ggcacacact 3660 tgaagtgcct ggtgataagg gagctcgccg agcggctcgg agtgtcgcac tcatttgttc 3720 cggtgtacac gccgtggatc aacgggacgg tggagagagt gaaccgcgat atactgcaag 3780 tattgagggt catgctgctt gagaaccagc ttgacagtcg caactggttt cacctcttac 3840 ctctcatcca agccaatttg aaccacagcc ccgtgatttc gttgggcaac ggtgccccag 3900 tagaaaattg ttcacggggc ttccggcgcc gtcagctttg gttatcgtgg tgctgcccga 3960 tgacaagttc cctcggacac taccgctgga gaaggaggct ttccgccagg cgattgagat 4020 gctccgtcgt agtctccacg ccatgcaccg tgtggtccga gaccagcgcg agcagcgccg 4080 tatcgctgcc atgactcgct ccaacggaac agtgtgcaat ttttcggaag gtgtggtcgc 4140 gtgttgacta gcggcttcaa ggaggcaagc tgttggtccg ctgggttggt cctttccaag 4200 tggctaagac cttgccgcac tcgtttctca tccgccatct acttacagga gctgagtatt 4260 atgtgcacgg gtcgcgtcta aatttctacc acgacaaaga tctcgaggta accgcagaga 4320 tccgggagca cgtctcactc caaggcatcg tgcttgaggt ccgtgcaata gtcgaccatc 4380 gtgtgaacac tgcctctggt gagctcgagc tgctggcggc acggcgtggg ctttaagaca 4440 ttgagagctg cccactcgat ccagcatgat gttccggcgc tggtggccaa gtacgcactg 4500 gaccatgagg tgcataaact gcagtaaaac tttgctcaag tcgtcttggg ggcagtgtgg 4560 cgta 4564 // ID Gypsy-35_PIT-I repbase; DNA; PLN; 4053 BP. XX AC AATU01001085; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-35_PIT_; KW Gypsy-35_PIT-LTR; Gypsy-35_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4053 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001085; Positions 38573 42625. XX CC 'ATCT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1111..2238,2242..4026) FT /product="Gypsy-35_PIT-I_1p" FT /translation="MKVLSSHGRRQVESKTTFQTVGGQVKSDGTAVLQFKF FT PHLNPTTKITHRFEILGHSSDPMVIGRDLMEALGLVLNFKDKIVQWDGYAA FT TLNTGPPSEAPASTVTTDNEFPDECKETVDTAVSPTDLMPDTLSGEVAARY FT LKLLQDYAHLYDGHLGRMRFDDYVLPLSPDFKPVHAKPYAIPRSIEDKAKA FT EIQRLVNQDVLEKIYGSEMASPAFFLVRENGTLRLLIDYRVLNKYLRRSPY FT YVPKIREILLRLAGAKFLSSFEANMGYYARRLARQSRPYTAFCLPWGKFQY FT KRLPMGTATDPDEYQACMEKIFGDLPFVVVYLDDILVFSSTEDEHLEHLRV FT VFDRLDQFHITLNGKKCHILRDSVNYLGFTLTAGIQPQAKNIQAIQQIAAP FT KNRKELRRFLGMINYYKDMVPNKAALCAPLNRLTSNKTPFTWLQSDTDAFN FT AIKKAFAEAVLLAFPDFSRPFHVYADASGKQLGGIIMQQNSILACYSRALD FT KYQVNYTTTELELLSIVSLLREYRTMLLGFEVVVHTDHKNLIYPTENNLRV FT KRWKLPLSEYRLTLHYIKGAKNIGADAFFRMRFESQQQPSIEEEVYAVEEE FT PACVMHGPVIREQQVKDEMIQKIKPACLAGDDNPDYKLMSLLGCTLVAYHG FT RVIIPESLREDLVDWYHQNLAHPGSERQFKTMRQVLYWPGMETFIAAQLNK FT YLVCKRAKVHGGKQDYGLLPSRSLKTVNPWDLVHVDLIGPYDGGGYGITMI FT DHATRWLEVGVQPDKESRTTAESFDREWLCRYPRPRQVIHDTGPEFTGEEF FT QELLRSYGIEAKPITVKNPKANAIWGRVHMELMNIVRCYETVDWKKYLYYA FT AFAVCASYHSILNASPGQLIFGQDMISRQLYQANWSYMSKRRFDAILQDND FT RENSKRSEHFYSAGDHVMLRVPKAFRAKTRAVAQGPYTIKQVHDNGTVTID FT KGATTQQVSVRRIFPC" XX SQ Sequence 4053 BP; 1105 A; 1097 C; 1027 G; 824 T; 0 other; ttttgatata tcaaatctgc aaggcgaatc aaggaccttc agacatgggg cgcaagcaac 60 acgacgagga cgactacgtc acctacacga tcgtcacaag ccccacaacc gagcacgctc 120 cagccgacac ggccaagatc cacatcccca agttctacgg gggcaacgct aaggactggc 180 tgcgatagag catgcgcttc aagagcctcg ctcaacggaa aggttggaca gtcgagcaag 240 ccgcgatgca acttcttctt ttcctggacg gcgagttgaa gtgcgacgtc gaagacaacg 300 ccagacaggc ggtccagaac ggcttatcct tcaccgagtt ctacgagagc attggaaggc 360 tgttagtccc ggccaactac agcgagacgt tcgacgaaga actatggagc ctggtgaagc 420 gctctaacaa gagcgtccag cagctctaca gacggctcaa ggagctggta cgcatgtttg 480 cggaactgcc gaccaacgcg gaagtcattt ctgaggttca acagtgccgg ttcttcaagc 540 gagctatgcc gcacgcatgg caagacaagc tcgcagcatc tggcgtcgct cacgaacaaa 600 tgagtgagct gatccagtat tttgagcgga tagagatgcg agaaaaggct ggttgcaagg 660 agaaagaaag caatagtttc agcaaattat tgcgcccttc gcgtttcaac aagcccgaga 720 agtcggatcg tcacaaaggt aacaaagaca agagcaacca cgcgtcttcg gcctcggcgc 780 ccaagaaccc gaacaagtgg tgcacgcacc atcagacctc gtcacacagc tgactgtttt 840 gcgctcaaga aacaacaaca ggatgagcat aaacgcgctg ctgcaaagaa gaaggcaaag 900 ccgaagaagt acccaagagt gtacaaagac cgccacagtg acagcgagtc tagcgacgag 960 gacgaataca agttcatcgg actggtggat ccaaagcccg tcgcccccaa agctcctcta 1020 cgcatcgagg tacaactgcg caaggagagc aaaaagattc atgcgctact cgacagcgga 1080 gcctccaaaa gtgtgatcaa cgccgacacg atgaaagtat tgtcgtcaca tggccgcaga 1140 caagtcgagt ccaagacaac gttccaaacg gtgggcggtc aagtcaagag cgatggtacc 1200 gctgtgctgc agtttaagtt tccgcacctg aacccgacga ccaagattac ccaccgattt 1260 gagatcctcg gtcacagctc tgacccaatg gtcattggac gagatctcat ggaagcactg 1320 ggcttagtgc tcaatttcaa ggataaaatt gtccaatggg acggctacgc tgccacgctc 1380 aatacgggcc ctcccagtga agcaccagca tcgacagtga cgacggacaa cgagtttcct 1440 gacgaatgca aggagacggt agacacggcc gtcagcccaa cagacctgat gcccgacacc 1500 ctgtcaggag aagtagcagc tcgctacctg aaactgctgc aagactacgc acatctgtac 1560 gacggacacc tcggacgaat gcgcttcgac gactatgtgc tacctctatc acctgacttc 1620 aaaccagtac atgcaaaacc gtacgcgatt ccgcgtagca tagaagacaa ggcgaaggct 1680 gagattcaac gactcgtgaa tcaagatgtt ctcgaaaaga tctacggctc ggaaatggct 1740 tcaccagcat ttttcctggt tagggaaaac gggacgttac gtctgcttat tgattacaga 1800 gttctcaaca agtacctacg tagaagcccg tactacgtgc ctaaaatccg cgagatcctg 1860 ctgcggctcg ctggagctaa attcctctct tcgttcgaag ccaacatggg ctactacgcg 1920 cgccggctcg cccgacagag tcgcccgtat accgcttttt gtctcccctg gggcaagttt 1980 caatacaaga ggctacccat gggcaccgct actgatcctg atgagtatca ggcgtgcatg 2040 gagaagatct tcggagacct gccgtttgtt gtcgtgtacc tcgacgacat cctcgtattc 2100 tccagcactg aagatgagca cctggaacac ttacgtgtgg tgttcgatcg tctggaccaa 2160 ttccacatca cacttaacgg caagaagtgc cacatcttgc gcgactccgt taactacctt 2220 ggctttacgc tgacggctta aggtattcaa ccgcaagcaa aaaatattca agcaatccag 2280 cagattgcag ctcccaagaa cagaaaggaa cttcgtagat tcctcggaat gatcaactac 2340 tacaaggaca tggtgcctaa taaggctgcc ctatgtgctc cgctcaaccg gctcacgagc 2400 aacaaaacgc cgttcacatg gctacaaagc gacacggacg cgttcaacgc gatcaagaag 2460 gcctttgctg aagctgttct cctcgcattt ccagatttca gccgcccttt tcacgtgtat 2520 gccgacgcca gtgggaaaca gcttggaggt attatcatgc agcagaactc gattttggct 2580 tgctattctc gtgccctgga caagtatcaa gtcaactaca cgacgacgga gctagagctt 2640 ctttcgattg tgtctctact ccgcgagtac cgtaccatgc tgctggggtt cgaagtggtc 2700 gtacacactg accacaagaa cctcatttac ccgactgaga acaacctgcg agtgaaacgt 2760 tggaaacttc cgctctccga gtatcgtctc acgctgcatt atatcaaagg cgcgaagaac 2820 atcggagcgg acgctttctt tcgaatgcgg tttgagtccc agcaacagcc gtcaatagag 2880 gaagaagtct acgcagttga agaagaaccc gcatgtgtga tgcacggacc tgtcatccgt 2940 gagcaacaag tcaaagacga aatgatccag aagatcaagc ctgcgtgcct cgcaggtgac 3000 gacaacccgg actataagct tatgtcactt ctaggatgta ccctggtggc gtatcacggc 3060 cgagtaatta tccccgagtc gcttcgagaa gatctcgtcg actggtacca ccagaaccta 3120 gcacatccgg ggtccgaacg gcagttcaag accatgcgcc aagttctata ctggcccggc 3180 atggaaacgt tcattgcagc gcagctcaac aaatatctcg tctgcaagcg tgcaaaagta 3240 cacggtggca agcaggacta tggccttttg ccctcaagat cactcaagac tgttaaccct 3300 tgggatctgg ttcacgtgga tttaattggg ccttacgatg gaggtggata cggcatcacg 3360 atgatcgatc acgccacgcg atggcttgaa gtcggcgttc aaccagacaa ggagtcccgc 3420 acaacagccg aaagcttcga ccgagaatgg ctttgtcgct accctcgacc tcgacaggtg 3480 atccatgata ccggacctga gttcactggc gaagagttcc aagagttgct gaggagttac 3540 ggtatcgaag cgaagccaat taccgtcaag aaccccaaag ccaacgcgat ttgggggcgt 3600 gttcacatgg agctgatgaa tatcgtcaga tgctacgaga cagtggactg gaagaagtat 3660 ctgtactatg cagcgtttgc tgtgtgtgct agttaccata gcattctcaa tgcctcacct 3720 ggacagctga tcttcggaca agatatgatt tctcgccagc tgtaccaagc caactggagc 3780 tacatgtcga agagaaggtt tgatgcgatc ctacaagata atgatcgcga aaattccaag 3840 cgaagcgagc acttctacag tgctggagac cacgtaatgc tgcgtgtccc caaggcgttt 3900 cgggcgaaga cacgagctgt tgctcaaggc ccgtacacta tcaagcaggt acatgacaac 3960 ggcacggtca ctatagacaa aggagccacg acacaacaag tcagcgtccg ccgtatattc 4020 ccttgctaac cgaacaggtt catgggggga gta 4053 // ID TSK1_I repbase; DNA; PLN; 5250 BP. XX AC AF492702; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces kluyveri retrotransposon TSK1_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TSK1_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Lachancea kluyveri OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Lachancea. XX RN [1] RP 1-5250 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AF492702; Positions 323 5572. XX SQ Sequence 5250 BP; 1854 A; 1210 C; 891 G; 1295 T; 0 other; tggtagcgcc tgtgcttcgg ttacttctaa agaagtccac acgaatcaag atccattaga 60 cgtctcagct tccaaattcg acgaatatga gaacaattcc accaaggcta gttctcaacc 120 tgaagaaaca cctgtgtcat cagctgttcc cgagaacgct catcatgcct ctcctcacac 180 tgctcaagca ccattaccgc agaatgggcc atactcacag cagtgcatga tgaccccaaa 240 ccaagccaat ccatctggct ggtcagtata cggacaccca tatatgatgc cgtacacacc 300 ttatcaaatg tcgcccatgt actatccacc tgggtcacaa caacagtatc cacagtatac 360 atcaggtgtt ggcacgccat tgagcactcc atcacctgag tccagcaata cacctaccgg 420 accaccatca gcaaaatcta atatgacacc cgttaacaaa tctgtcagac caccaccgtt 480 tttaacctca tcgagtgaat tcctaatttg ggttagaaat tacatcaagt ttttacaaaa 540 ttccaatctt ggtgatatta ttccgaaaac caacggaaaa gctacgcgtc agatgacata 600 tgacgagcac actttcttgt acaacacttt tcaaacgttt gctccatctc aattcctacc 660 tacttgggta aaagacatct tatctgttga ttacacggat ataatgaaga ttctcactaa 720 aagcatggaa aaaatgcaat ccgacaatca agaggtaaac gactatatta cgctcgctaa 780 cctgcaatac gatggtagta tccctgcaga tatgtttgaa acacaagtaa tcaatactat 840 tgacagactt cgcgacagcg gtcttcatat caacgacaag ctagcgtgca aattaattag 900 gagaggcctc tctggtgaat atagattctt acgatacgca cgtcatcgcc atctaaacat 960 gacagttact gaactattca tggacattca tgccatatat gaagaacaac aggaaacgag 1020 atacaataag cctacatact cgaagaatcc tagtgataag aggaatactt ctcgagcctt 1080 tacaaataca aataaagcca aaactgtaac tcgaaaccct caaaaaacaa gtaactcaaa 1140 atcaagaaca gtcaagacta ataacgtgtc tacatcccac aactcttttg acgaaaataa 1200 tgattcgatc aacgaatcac ctgatcaaac aatatacttg aacaatcagt acgaccttca 1260 tcttaggcca gaaacatact gagtccaaag taaaccacac ggatcattca aatgatgaac 1320 ttcctggaca ccttctcatt gattcaggtg catcacaaac ccttatcaga tccgctcatc 1380 acatacactc agcgtcacct aatattgaca taagcgcaat tgatgctcaa aaaaaggaaa 1440 taccgatcaa cgccattggt aatctccaat tccaattcga cgacaatact aagacatcaa 1500 taacagtatt acacactccg aacatagccc atgatctgct cagtttgagt gagctagcta 1560 aacaaaatat cacagcctgt tttaccaaaa ataccttaga gcgatctgac ggcaccgtac 1620 ttgcccatat cgttcgacat ggtgactttt actggctatc caaaaaatac ttgattccct 1680 cgaacctatc tgtaccaaca gtcaataata tcggtactga taaaggctca cacaagtatc 1740 catatccttt gattcatcga atgcttggac acgccaatgc tcaaaccatt cggaattctc 1800 tgaaaaataa ctcgatcacg tatctaaagg aatcagatgt cgactggtct aaagcgacta 1860 cttaccaatg cccggactgt ttaatcggca aaagcaccaa acacagacat gtcaagggat 1920 cacgagtaaa ataccaaaac tcgtatgaac ttttccaata cctacatacc gacatatttg 1980 gacctgttca caacctgcca aaaagtgcac catcctactt cataacattc accgatgaga 2040 aaaccagatt tcaatgggtt tatccattac acgatcgtcg tgaacaatcc attctcgagg 2100 tttttaccac aatactagcc ttcattgaaa gacaattcaa ggccagtgta ttggttatcc 2160 aaatggaccg tggatctgaa tacaccaaca aaactctcca caaattcctt cttaaaaagg 2220 gtatcactgc atgctataca accacagcag actctcgagc tcatggtgta gctgaacgat 2280 tgaatcgtac tttactagac gattgtcgca cacagcttca atgcagtggg ttaccaaacc 2340 atttatggtt ttccgcagtt gaattttcaa ccatagtcag gaactcttta gtttcaccca 2400 aaaacgagaa atctgcacga caacacgcgg gtttagcagg actcgacatc agcaccctac 2460 taccgtttgg tcaacctgtg gtagtcaata atcacaatcc tgattcgaaa atacatcccc 2520 gtggcatccc tggctacgct ctgcatccat cccggaactc ttatggatat attatctatc 2580 ttccatcttt aaagaagaca gtggacacta ccaattacgt tattctgcaa gacaagcaat 2640 ccagattaga ccaattcaat tacgacgcac tcacctttga tgaagacata agtcgactaa 2700 ctgcttcata caaatcgttt atcgattcaa atgaaataga acagtcatgc gaacttcaca 2760 tggattctga tcataatttt caatctgaga tagaccatgg cactgaaccc cggagagatg 2820 acagtcccac agacctgatt gcaactggtt cgctatcaac ttctactcaa ccaacgataa 2880 tggaacccgt acctactact aatgttcgtg cacccaaaga agttgacccg aatatatccg 2940 aatccaatat ccttccgtca aagaagaggt ataacgtgcc caatattcct gatccagaca 3000 gtacctgttc gggtggtacg aatagaccag atgtatctat tgttatccct gcgcacgact 3060 ctgtcacaca acagtcgaat aaatacaata attacgataa agtgagtgat ccaggtccct 3120 acagcaatac tgataccggt ttcacgaacg ttacaacacc ctgtttgggt ggtaccaaca 3180 acaagaatat tccagatctc aacgatcaga ctatcgagaa aagatcgata agctgcccaa 3240 ttcctctaga tgattcttca cagggaagtg agataccaaa ctataacact cctattgata 3300 caccagacac ctactctgaa catgacgtca aggagtatat taccgaagat cttccgcttc 3360 ccgaattacc tccagaatct cctacctgtt tccccgatgc atttaaagaa attccaccga 3420 tcaactctcg tcaaactaat tccagtttgg gtggtatggg taaacctaat atctatgcta 3480 ctatcgatag taagaaaaga tcattagaag ataatgaaac tgaaattaag gtatcacgag 3540 acacatggaa tacaaagagc atgcgtagtc tagaacctcc aagatcaaag aaacgtatac 3600 acctgatcgc agctgtaaaa gcagcaaaat cgatcaaacc gatacgaaca accttgagat 3660 atgatgaggc aatcacatat aataagaata tcgaggaaaa ggaaaaatac attcaagcat 3720 accataaaga agtaaatcag ttactaaaga tgaatacatg ggacacagac agatactatg 3780 acaaaaatga aatagacacc aaaaaggtga taaactcaat gttcatcttt aacaagaaac 3840 gcgatggaac acataaagct agatttgttg caagaggaga cattcaacat cctgatacgt 3900 acgactcaga aatgcaatct aatactgtac atcattatgc attgatgaca tccctgtcac 3960 ttgcattaga caatgaccac tacgtcacac aactagacat atcttcggcg tacttatacg 4020 cagatatcaa agaagaatta tacataagac ctccgccgca tttgggtatg aacaacaagt 4080 taatacggtt gagaaaatcg ctttacggct tgaaacaaag tggtgcaaac tggtatgaaa 4140 ctatcaagtc atatctggta gacaaatgtg gtatggaaga agtacgtgga tggtcatgcg 4200 tgtttaaaaa cagtcaagta acaatctgtt tattcgttga tgacatgata ctgttcagca 4260 aagacttgaa ctcaaacaaa aggatcatag aaaaactaaa gagacaatat gacactaaga 4320 tcataaacct aggtgatagt gatgatgaaa tccaatatga catcctggga ctagaaatca 4380 aataccagag aggcaagtac atgaaactag gtatggaaaa ttcattaact gagaaattac 4440 caaacctaaa cgtacctttg aacccgaaag gtaggaaact tgccgctcca gggcaacccg 4500 gtctttacat agaccaagaa gagttagaac tggaagaaga tgattacaaa atgaaggtgc 4560 acgaaatgca aaagctaatt ggcctggcat cgtacgttgg atacaagttc agattcgacc 4620 tactgtacta catcaacact cttgcacaac atatattatt tccgtccaaa caagttctag 4680 acatgacata tgaattaata caattcatat gggataccag agatcgacaa ctaatatggt 4740 acaaaaacag atcttcgaaa ccagaaaaca aattagttgt aataagcgat gcttcgtacg 4800 gaaatcaacc gtattataaa tcccagattg gtaacatatt cctactcaat ggaaaagtca 4860 ttggaggaaa atcaacaaaa gcctcactaa cgtgtacttc aaccacagaa gcagaaatac 4920 acgcagtcag tgaagctgtt cctttactaa acaatctaag ttatctcgta caggaactag 4980 ataagaaacc aatcatcaaa tgtttactta ctgacagcag atctacaatc agtatagtta 5040 catccaaaaa tgaagagaaa tttaggaaca gattcttcgg cactaaagca atgagactca 5100 gagatgaagt atcggacaat aatctgtact tatgctacat tgagaccaag aagaacattg 5160 ctgatatatt gacaaaacct cttccgataa aaacgtttaa gttgttaaca aacaaatgga 5220 ttcattagat ctattacatt atgggtggta 5250 // ID Copia-3_PIT-I repbase; DNA; PLN; 5042 BP. XX AC AATU01002883; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PIT_; KW Copia-3_PIT-LTR; Copia-3_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5042 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002883; Positions 84954 89995. XX CC Positions [2021-2515] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 82..1758 FT /product="Copia-3_PIT-I_1p" FT /translation="MSSTSLPSSSSTTGTVVPSIATATSLMASAEATTTQI FT PVASATSTQVVSCVTSGVSGVVSTATAGAVTTGGMSGGVASGVASVPGVSG FT GGYNVGGFNFGGITPGQGGFGLPRVGFGALPVKMDNVPKMKGSFDLYAAHL FT RALLTRLNCWSVVDGSFDPNIPVEQINFAARNNIAREATLSDVPAQDAEMI FT CQEETAQAMWNSFVDKQTKRNYIFARAEFYSHVYTADKGMDQWLREMESMR FT RQLLHYGRRVTDEDYAETLLGHVARTHRDVVRQFSKHYVVRGDGASVRPVP FT TATQVMNALRAESALDEKIGSEEQLPAGIAACGRESTQHKEKKQNSGKGKR FT KRTFRGKKQKDAKQVGKKTGKQDCFHCGEVGHLRPNCPNRDEDSSDDRAAG FT ISSEGSERKRWQNRSGGDCKSKKKEKKISAVGCISRESLMVASVSNAASDD FT IEWALDSASDVHVCNQLELLSQLQQDSKHVFQGYDGNITDNERIGNVNIKV FT MNNNQPHQEVSLQLENVLLKSSAPDNLLSLDALENAGWSLKTARRDSQPDK FT RSSTATVCEVSW" FT CDS 1898..4990 FT /product="Copia-3_PIT-I_2p" FT /translation="MAKQQVTTGMEENLNDDAEIPCWSCKSAKMTRMSYKK FT TLTRRATKPYQKLMSDMCYVGIATYDGYMHFQLVQDEATRYLWGFLLKRKE FT DATEAVIAHVNWLLSQRHKIQVFNSDQGRELLNKKLRLFLHSHGVEYTWTN FT AYSPEENGLVERMNGVIMARVRCLLTTADMPYLLWGEAFSFAIEVGNICAL FT SALNGEKPYFRRFEERPDVSALRTWGCLTYVFTPKVLRMSKLENPGKPALL FT MGYAKHSESYRVLSLVTGNIQEVRSVDFHEDWTVERSYVEGLLNNRYNKGH FT QVLPAIIPFVRLPVLSSTTKDSSIHDEVRTKRRHCDGGIGDTNSHYTEVRS FT SPACPGAPDRLPLIEAEMFPVATGDQLLQREANPSRVKWTDSEGQEGDTDM FT NLPNSDSVAEPPVASHTSPSVGKERVVTDADVEYDDMEDKEPIAIGDPSSP FT VDKVDDAIRDSESEDDVMMNDTTESFRRSHRTRWPSSRYKDFEVELPLSLM FT IEAVNSIMEPQTLEEALSAPDADQWIQALKKEYGDLMRNNTWELVERPKGK FT KVLTSRWVFVRKRDAHGNYVRHRARITIEGCQQRYGVSFWETYSPVVAQEA FT VKFILLLALHLGLSCRHVDFVTAFLNGPIGDVDIYMEMPEYFDDGSDRVCK FT LLRSLFGLKQAPMIWYQTLDKYLRSLGFRRSKMDGGIYVRSVGGSPIFVSV FT YIDDLIIAGTEENIELVLRELRAKFKIKDLGPVKDLLHMEISYVPGDVLWM FT SQSGYIDKVLKRFGMEDCRPVATPQATGNLPDTVDDDEPGVNDPSIPYREL FT VGSLQYLVQGTRPELANAVRTLGKYLKRYTKEHFVMAKRVLRYLRGTRDYG FT LLWKKPANSDLHFTAYADADLGNEKDDRRSITGFVLQMNGCTYAYKSHKQS FT ITQDDTCSAELIAAAECFVMIVWTHNLCEELKLCRRRPTVLFQDNQSTIKV FT IKSTKGNYKVKGVDLKYHKVKDLYERGDFDVRYCPTAEMLADIFTKPLGST FT QFSKLRKLLNVVPLPLMESDATKDD" XX SQ Sequence 5042 BP; 1358 A; 973 C; 1364 G; 1347 T; 0 other; ctactgcggt accccgctag gttatgagcc caagcttctg tgtggagtta ccagagaacg 60 tttagtacaa cacagtcgag aatgtccagt acgtcgcttc cgagttcaag ttctacaact 120 ggaactgtag ttccttcgat cgctactgct acgtcgttga tggcctctgc tgaagccacg 180 acgacacaga taccggtagc ttcagctacg tctacacaag ttgtgtcatg tgtgacgagt 240 ggagtctctg gagttgtatc tacagctact gcgggagctg tgactaccgg tggaatgtcg 300 ggtggagtcg ctagcggtgt tgctagtgtt cctggagtta gtggtggagg atataacgtt 360 ggtggcttta attttggagg aattacacca gggcaaggtg gatttggcct gcctcgtgtt 420 ggctttggcg cgttgccagt gaaaatggac aatgtaccta aaatgaaagg aagttttgat 480 ctgtatgcag ctcacttgcg agcgcttttg actcggctga attgttggag tgtggttgac 540 ggtagtttcg atccgaatat tccagtcgaa cagattaact tcgctgccag gaataacatc 600 gcccgtgaag ctactttgtc tgatgttcca gctcaagatg cagagatgat ttgtcaagag 660 gagactgctc aagcgatgtg gaattcattt gtggataaac aaactaaacg caactacatt 720 tttgctagag cagagtttta ttcgcatgtg tatacagcgg ataagggcat ggatcaatgg 780 ttacgcgaga tggaatcaat gcgacgccaa ttgctacact atggtagacg tgtgacggat 840 gaagactatg ctgagactct tcttggtcat gtggcacgaa cacatcgtga tgttgttcgt 900 cagttctcaa aacactatgt ggttcgaggt gatggtgcat cagtccgacc tgtacctact 960 gcgactcagg tgatgaacgc cttacgcgct gagtcagctc tggatgagaa gattggctcg 1020 gaggagcagt tgcctgctgg aatagctgca tgtggacgcg agtctacaca acacaaagag 1080 aagaagcaaa attcaggtaa aggcaagcgc aaaagaactt ttcgcggtaa aaagcagaag 1140 gatgctaaac aagttggcaa gaaaactgga aagcaagact gttttcactg tggagaagtt 1200 ggtcacctac gtccaaactg tccgaatcgt gatgaagatt catctgatga tcgagcagct 1260 ggaatttcgt ctgaaggatc ggagcgcaaa cgttggcaaa accggtctgg tggtgactgt 1320 aaaagtaaga agaaggagaa gaagattagt gctgttggat gtatttctcg cgagtcattg 1380 atggttgctt cggtgtcgaa tgcagcaagt gatgacattg agtgggcttt ggattctgcg 1440 agtgatgtac atgtgtgtaa ccaactggag ttgctgtctc aattgcagca agactccaag 1500 cacgtctttc agggctatga tggtaatatt actgataacg agagaatagg taatgtgaac 1560 atcaaggtga tgaacaacaa ccagccgcat caagaagtat cactgcaact ggagaacgtt 1620 ctgttgaagt cttcagctcc ggataatctt ctgagtcttg atgcactgga gaacgctgga 1680 tggtcgttga agacagctcg acgtgattca caacctgaca aaaggtcgtc tacagctact 1740 gtttgcgaag tctcgtggta gataccgttt gaagacaact gctagtgcag tttatcatgt 1800 tccagcagtg aaccagcgtg accgtagaga agctgcaacg tcgcttatac gttggcatct 1860 ccggtttgca catccaaatc tcccagctct acagcaaatg gcaaaacaac aagttacaac 1920 cggaatggaa gagaacttga atgatgatgc tgaaattcct tgctggagtt gcaagtcggc 1980 gaagatgact cggatgtcat acaagaagac cttgactcgc cgtgctacca agccttatca 2040 gaagctgatg tctgatatgt gctacgttgg tattgcgacc tatgatggat acatgcactt 2100 ccaactggtg caagatgagg ccacgcgata tctttggggc ttcttgctaa agaggaagga 2160 agatgcaact gaagcagtta tagctcacgt gaattggctt ttgtctcaaa gacacaagat 2220 acaagtgttc aattcagatc aaggccgtga actcctgaac aagaagctgc gtttgtttct 2280 tcatagtcat ggtgtcgagt acacatggac caatgcttac agtccggagg agaacggatt 2340 ggtggagaga atgaacggag ttattatggc gagagtgcgt tgtctactta caactgcaga 2400 tatgccgtat ctcttgtggg gcgaagcctt cagctttgcg attgaagtgg gtaacatttg 2460 tgctttgagt gctttgaatg gagagaagcc atactttcga cgctttgaag agcggccgga 2520 tgtatctgcg ttgcgtacgt ggggttgttt gacttacgtt ttcacaccaa aggtgcttcg 2580 tatgtcgaaa ctggagaatc ctggcaaacc tgcattgctc atggggtacg ccaagcactc 2640 agaaagttat cgtgtgttga gtttggtaac tggtaatatt caagaggttc gttctgtgga 2700 ctttcatgaa gactggacgg tggaacgcag ctacgtagaa ggcttgctga acaatcgcta 2760 caataaaggg catcaagtgc taccagcgat tattccattt gtccgtttac cagtgctgtc 2820 gtctacgacg aaagattcgt cgatccacga tgaagttcgt acaaaacgac gccattgcga 2880 tggtggtatt ggtgatacta attctcatta cactgaggtg cggtcttctc cggcatgtcc 2940 aggtgcgcct gacaggctgc cgttgattga ggctgagatg tttcctgttg cgacaggaga 3000 tcagttatta cagcgtgaag ctaacccttc tcgtgtaaag tggactgata gtgaaggtca 3060 agaaggtgac acagacatga atttgcctaa cagcgattca gtggctgagc ctcctgtggc 3120 ttcacacaca tcaccttcag tggggaaaga gagggtagtc actgatgcag acgttgagta 3180 tgatgatatg gaggacaagg aaccaattgc gattggtgat ccgtctagtc cagtggataa 3240 agttgatgat gcgatcagag acagcgagag tgaagatgat gttatgatga atgacacaac 3300 ggagtcgttt cggcgctcac atcgcactcg ctggcctagc tcacgctaca aggactttga 3360 agtagagctt ccactcagtt tgatgattga ggccgttaac tcaattatgg aaccacaaac 3420 gctggaagaa gcattgtctg ctcctgatgc agatcagtgg atccaagcac tgaagaaaga 3480 atatggagac ctgatgagaa ataatacttg ggaactagtg gagagaccaa agggcaagaa 3540 ggtgctgaca agtcgatggg tgtttgtgcg aaaacgcgat gctcacggaa actatgttcg 3600 ccaccgtgcc agaatcacta tcgaagggtg tcaacaacga tatggggtga gcttctggga 3660 gacatactct ccagttgtcg cacaagaggc tgtaaagttt atcctactat tggcacttca 3720 tttggggctc tcttgtcgtc atgtggactt cgtgacagca ttcttgaatg gaccgattgg 3780 tgacgttgat atttacatgg aaatgccaga atattttgat gatggatccg atcgagtttg 3840 taagttgctg aggagtttat ttggattgaa gcaggcgcca atgatatggt accagacact 3900 ggacaagtat ttgaggtcgc taggctttcg tcgatcgaag atggatggag gcatttacgt 3960 tcgctcagtg ggaggcagcc caatatttgt gtcggtttat atcgatgatt tgattatcgc 4020 tggcactgag gagaatattg agttggtgct tcgagaactt cgagccaagt ttaagattaa 4080 ggacttgggt cctgtcaaag atctgttgca tatggagatt tcatatgttc caggtgatgt 4140 tttgtggatg tctcaaagtg gctacattga taaggtgctg aaacgctttg gtatggaaga 4200 ttgtcggcca gtggctacac cacaagctac aggaaattta cctgatactg tagatgatga 4260 tgaacctgga gttaacgatc cgagtatacc ctatcgtgag ttggtaggat ctcttcaata 4320 cttggtgcaa ggcactcgcc ctgagctagc aaatgctgtg cgaactctag ggaagtattt 4380 gaaaaggtat actaaggaac actttgtgat ggcgaaacga gtactgcgtt acttacgagg 4440 cactcgtgac tatgggcttt tgtggaagaa acctgcaaac tcggatttgc attttacagc 4500 ttatgctgat gctgatcttg gaaatgaaaa agatgatcgc agatcgatca caggttttgt 4560 acttcagatg aatggatgta cttacgccta taagagccac aagcagtcga tcactcagga 4620 tgatacatgc agtgctgagc tcattgctgc tgcagaatgt tttgtgatga ttgtgtggac 4680 ccataatctt tgcgaagaac tcaaactttg tcgtcgtcgt ccaactgtgc tgtttcaaga 4740 caatcagtcg acgattaaag ttattaaatc tacgaaggga aactacaaag tcaaaggcgt 4800 ggatttaaag tatcacaagg tgaaagatct ctatgaacgg ggtgactttg atgtacgtta 4860 ctgccctacg gctgaaatgc ttgcagatat atttacgaaa ccacttggat caactcaatt 4920 ttccaagttg cgcaagctat tgaatgtggt accgctacca ttaatggaga gtgatgctac 4980 taaggatgac taagttgttg ttatacgagg atggtagaat ggcggatccc gaagtgggag 5040 tg 5042 // ID Helitron1_PPa repbase; DNA; PLN; 6080 BP. XX AC . XX DT 03-NOV-2009 (Rel. 15.07, Created) DT 03-NOV-2009 (Rel. 15.07, Last updated, Version 2) XX DE Helitron-like element - consensus. XX KW Helitron; DNA transposon; Transposable Element; Helitron1_Ppa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-6080 RA Jurka J.; RT "Helitron elements from moss."; RL Repbase Reports 10(7), 960-960 (2010). XX DR [1] (Consensus) XX CC >98% identical to consensus. XX FH Key Location/Qualifiers FT CDS 1594..5643 FT /product="Helitron1_PPa_1p" FT /translation="MARALSTIDNFVDVNVDSVGSMCIQCPKCLAFRFKKE FT KNTICCYNGKIANEHVNHPIVHPMLNELYMGTTPKSREFLKSIRKYNQAFA FT FTSMRSKFQSGQVEGRGVYTFRVNGELCHHIGNLQPDLDEGARFAQIYFLD FT DGLQTNRRMEIFDDLHRDVVNNIQEVLESINALVRGFKSSRDVLQRGQNMG FT LRISGEVPFGEHPRRYNRQVVPEVAAVVLDEQYMNFGRDIILHQRGGDLIR FT IKEIHPAYDALSYPLLFPDGRCGWSPTFKADTGVTLKSYVQYLLQKRPESN FT VLHKAGRLFQQYVVDQYLRVEHENLLFIRQHQTELRAECYQGVVDALQEDN FT GARIGRRIVLPATFIGSPRYMQKLFHDSMVLVRVLGKPDLFVTMTCNPTWP FT EILDELEPGQSPPDRPDIVVRVFELKLRALMDEITKKNVMGETIAFCYTIE FT FQKRGLPHAHILLWLKDKVNDCDLVDRIVCAEIPDLDRQPQLYAAVAKHMM FT HGPCGLDNPNCPCMEDDRCTKNYPMQARDTTEVDGDGHVLYRRRNQGRYIE FT KRVRGQIVRLDNRWVVPYNPYLIGRFNCHINVEICSSVKTVKYLHKYIFKG FT PDRGVVETDEVVDEIKDFLEGRYVAAQEACWRLFGFETNNKSHSICRLPVH FT LPGQQYVTFKEGTSLHSVIDQNAETKLTKFFELNCHIRALIASGNQGNHML FT LRYMDLPLYYKWDVKNNMWERRVRKIKVFGRINMVPIGTEVFYLRLLLTHV FT EAPTSFEDLLCFHDIVHPTYKAACIARGLLQDDSEWENCLQEATVIALPKQ FT VRRLFATLLVFGQPLDPLSLLKTHLDAMSDDWRNDQNRYCKAILSIEEYLS FT SSDKHLTDFFNIEELNEFGYSNIVDVGGDSNDNIDFDNQNITFLEEDVGRL FT NEEQYIVFNAVTTAVLNSDSPDRLFFLDGPGGTGKTFLYNTILGYLRGRNV FT KCMAMATSGIAACLLNEGRTAHSALAIPLQLHDASICNISAQSTLGQSLRE FT VQLIVLDEACAGHRFMFEAIDRSLRDIRNIDSPNGGVVVLYGGDFRQTLPV FT VVRGGRKQTVQACLRHSYLFPLMQHFHLTTNMRLQSQPDFQRFLLDIGEGK FT TGPKVDLPLGLVAPGNSLDGLIDAIFDDPVDFSERVILAVRNDDAQEINRK FT ITDRIPGDVHQCFSADFVHENDEHAHHYPVEFLNSLQLSGLPPHQLSLKCG FT QYLMLLRNLNPAKGLCNGSRLRLLQVSSSVLLCEIVEGRYRSQEVLIPRIT FT HHCNDSRLPFTLCRRQFPVTGAFAMTINKSQGQSYDRVGIYLRNEVFSHGQ FT LYVALSRGRHPANIKVANDNNEAVGTVKNIVYHEVFT*" XX SQ Sequence 6080 BP; 1683 A; 1029 C; 1280 G; 2088 T; 0 other; acttttactt ttacttttgt tgactgcgcg gttgactgct ccgtttatta ctgcgcggtt 60 ttgaaatttg aacgttgagt ttgtgggtgt gtgcaatcca aagtgtgtgt tacaatttga 120 gcttacccaa aacaaatttg aaactcttga ttacaatttt gaagctcttg attacaaatt 180 tgatgttcaa aacatttttt ggattgtgca cttcaagatt gagttgtaaa ttgtgagttg 240 taagttgtaa gttggaagtt gtaagttgga agttgtaagt tgtgaagttg gagttggagt 300 tggttgatgt gatcttggag gtttgaatac gaagttggag ttggagttgg ttgatgtgat 360 cttggaggtt tgaatacaaa gttggagttg gagttggagt tacaaagttc aagttgtgga 420 gattgttcaa gaaatttgag gtgagattgc aatttttgca agattgtgaa agattgaaag 480 gttttgaaag attgaaattt ttggtaattt ttgattttgg gtaatcataa aatcaagttt 540 tcaaacatta aactttcaaa tcaagttgaa atttagtggt tttagttgca aaaaaccaaa 600 caaaaaacaa aaaacatcaa ggactcaaaa acgagcagct gctgttctgt gatgtgcaca 660 tcgccgaaac ttttactttt acttttttta actttttttt tttttttttt gcccaacaat 720 ttttcatccg ctgcgatttt tcatccgctg cgcgattttt catccgctgc gatttttcat 780 ccgctgcgcg atttttcatc cgctacgcga tttttcatcc gctgcgcgat ttttcatccg 840 ctgcgttttt tcatccgctg catggttttc atccgctgcg cgatttttca tccactgtgg 900 atgaaactgt attttgggca gaattcattt aacagtgagt taatatctcc caaaatacta 960 attatttttg aattccgact tcggatttgg actttttagg tgcattttca tttagtagga 1020 aagaaaatga tttgtgacaa aagttttcaa aaatcgacat ttttaagtgt cttcaaaaaa 1080 aaaaatttag agtctaaact ttggaggtag agtatggctt gagaatatgt tcatcacatt 1140 tgttttcatg catgtttttt gtgtgttaga tcaatacctc ttggctacga atgtgttgca 1200 aagcaagcgc caacctaatc tatttttttt ctttgaagtg tagtgcattg aacgtaaact 1260 ttttagagtg gagtgaaatt tcatcaaaag gtgcaacttt cttggagcac aagcttacaa 1320 aggtactatc aaaaacctta cttttgtgag ttttgaaatg gtttgggatt cacgttagga 1380 tttttgttat cctacattaa actctgcttt ttcttatcaa ttttttcaat ctttgtggag 1440 tttaggattt agggtaggat ttcttctatc ctacactaaa tcctatttat tgatatatct 1500 ttttatcttt gtggagttta gaatttatga tagggtcttc attctcctat cctaaattcc 1560 acttttttta ttatattgtc atctttctag agaatggctc gtgctttgtc taccattgat 1620 aattttgtag atgtcaatgt tgatagtgtt ggatcaatgt gcatccaatg tccaaaatgt 1680 ttggcttttc gttttaaaaa agaaaaaaat accatttgtt gttacaatgg caaaattgcc 1740 aatgaacatg ttaatcaccc cattgtccat ccaatgctca atgagcttta tatgggcaca 1800 acacctaaat ctcgagagtt ccttaaatcc attcgaaagt ataatcaagc ttttgcattt 1860 acaagtatgc gtagtaagtt tcagtctggc caagttgaag gtagaggggt atatactttt 1920 cgtgtgaacg gagagttatg ccatcacatt ggaaatttac aacccgattt agacgaaggt 1980 gctagatttg cacaaattta tttcttggat gatggtttac aaacaaatcg tcgtatggag 2040 atttttgatg atcttcatcg tgatgttgtt aacaacattc aagaagtttt agaatccata 2100 aatgcgttgg ttcgtggttt taagtcttcg cgtgatgttc ttcaaagggg acaaaacatg 2160 ggacttcgta tctccggtga ggttcctttt ggtgaacatc cccgtcgata taatcgccaa 2220 gtagttccag aagttgctgc tgttgttctt gacgaacaat acatgaattt tggtagagat 2280 attattcttc accaacgtgg tggagattta atacgaataa aagaaattca tccagcttac 2340 gatgctttat cctatccttt gttgtttcct gatgggcgat gtgggtggtc accaactttt 2400 aaagcagata ctggagtgac tttaaagtca tatgtccaat atttgcttca aaagcgccca 2460 gaatctaatg tattacataa ggctggtaga ttattccagc aatatgtagt ggatcagtat 2520 ttacgtgtag aacatgaaaa tttgcttttc attaggcaac atcaaactga acttcgtgca 2580 gagtgctatc agggggtcgt agatgctttg caggaagaca atggagcacg cattgggcgt 2640 cgcattgtct tacctgcaac attcattggt tccccccgat acatgcaaaa actctttcat 2700 gatagtatgg ttttggttag agttttagga aaacccgatt tgtttgtgac aatgacatgt 2760 aatccgacct ggcctgagat tcttgatgag cttgagccag gtcaaagtcc tcctgatcgt 2820 ccagatattg ttgtgcgtgt tttcgagctc aagttaagag cattgatgga tgagattacg 2880 aagaagaatg tcatgggaga gacaattgct ttttgttaca ctattgagtt tcaaaaacgt 2940 ggtcttcctc atgcacacat tcttctttgg ttgaaagaca aggtcaatga ctgtgacctt 3000 gtagatagga tagtatgtgc ggagattccc gatttagata gacaaccgca attgtatgcc 3060 gcggttgcca agcacatgat gcatggacca tgtggtttgg acaatcccaa ttgtccatgc 3120 atggaagacg atagatgtac aaagaactat ccgatgcaag ctcgagatac taccgaggtg 3180 gatggtgacg gacatgtttt gtaccgtcgt cgaaatcaag gtcgatatat cgagaaacgt 3240 gtacgtggac aaattgtccg tttagacaat cgatgggttg tgccatacaa tccatatttg 3300 ataggtcggt ttaattgtca cattaatgtg gaaatttgca gttctgtaaa aactgtcaaa 3360 tacctccaca agtatatttt taaaggtcca gatcgtggtg ttgtagaaac agatgaagtg 3420 gtagatgaga ttaaggattt cttggagggt cgttatgtgg ccgcccaaga agcatgttgg 3480 aggctctttg gttttgaaac taataataag agccatagta tttgtcgttt gcctgttcac 3540 cttcccggtc agcaatatgt tacttttaag gaaggaacat ctttgcactc ggtgattgat 3600 caaaatgctg agactaaact caccaagttt tttgagctta attgccatat tcgtgcctta 3660 attgcttctg gcaatcaagg caaccatatg cttcttcgtt acatggatct tccactctat 3720 tacaagtggg atgtgaagaa taacatgtgg gaaagaagag tacgtaagat aaaagttttt 3780 ggtcggataa acatggttcc cataggtacc gaagtatttt acttgcgttt gttgttgact 3840 catgtcgagg caccaacttc atttgaggac ctactttgtt ttcatgatat agtgcatcca 3900 acgtacaagg ccgcttgtat tgcaagagga cttttacaag atgattctga atgggaaaat 3960 tgtctgcaag aggcaactgt cattgcgttg cctaaacaag ttcggcggtt gtttgcaaca 4020 cttcttgtgt ttggacaacc gctagatcct cttagcttac taaagacaca tcttgatgct 4080 atgtctgatg attggcgcaa tgatcaaaat cgctattgca aagcaatttt gtccattgaa 4140 gaatatttgt catcatcaga caaacatctt acagattttt ttaatatcga agaattgaat 4200 gagtttggtt attcaaacat tgttgatgtt ggcggtgatt ccaatgacaa tattgatttt 4260 gataaccaaa acattacttt tctagaggag gatgtaggta ggctcaacga agaacaatac 4320 attgttttta atgcggtgac cactgccgtt ttaaattctg attctccaga tcggcttttc 4380 tttttagatg gtcctggtgg tacaggtaag acctttttgt ataacaccat attgggttat 4440 cttcgtggtc gtaatgtcaa gtgtatggca atggcaacaa gtggaattgc cgcatgcctt 4500 ttgaatgaag ggcgaacggc acattcagct cttgctattc ctttacagtt gcacgatgca 4560 tcaatttgta acattagtgc ccagtctaca ttaggtcaaa gcttacgtga agtacaattg 4620 attgtacttg atgaagcttg tgctgggcat cgttttatgt ttgaagctat agacagatca 4680 ttgcgagata tacgcaatat agatagtcca aatggtggtg ttgtagtatt atatggcggt 4740 gattttcgcc aaactttgcc tgtagttgta cgtggaggtc gcaagcaaac tgttcaagct 4800 tgcttgcgac attcatacct atttccacta atgcaacatt ttcatttgac cactaacatg 4860 cgtttgcaaa gtcaaccgga ctttcaacga tttttgttag atattggtga gggcaaaacc 4920 ggtccaaagg tagatttacc gctaggatta gttgctcctg gaaattcttt agatggtctc 4980 attgatgcta tttttgatga tccggttgat ttttctgagc gcgtcatttt ggctgtccgg 5040 aatgatgatg cccaagaaat caaccgaaaa atcaccgatc gtatacctgg tgatgtgcat 5100 caatgtttta gtgctgattt tgttcacgag aatgatgaac atgcccatca ttacccagta 5160 gagtttttga attctttaca attgagcggt ttgcctcctc accaattaag tcttaaatgt 5220 ggccaatatt tgatgttgct aaggaacttg aatccggcaa aaggtttgtg caatggtagt 5280 cgtttgcgtc ttttgcaagt gtcttccagt gtgttgttat gtgaaattgt agaaggacgc 5340 tatcgtagcc aagaggtatt gattcctaga atcacacatc attgcaacga tagccgcttg 5400 ccattcacac tttgccggag acaatttcct gtcactggtg cttttgccat gacaatcaac 5460 aaatcgcagg gccaatcata tgatcgagtt ggcatttatc ttcgcaatga agtatttagc 5520 catggtcaat tatatgtggc attgtctcgt ggtagacatc ctgcaaacat taaggttgcc 5580 aatgacaaca atgaagccgt gggaacggtt aaaaacattg tttatcatga ggtttttaca 5640 tgacattgtc atataaattc ctataaatat ttacacctga atcaggtgga tggaaaagtt 5700 aagagtttgt ttcaaactct gcatgtttag ggttcatgca cgctttggcg acgtcccctt 5760 ccatccaatt gcattctttt ggtgttcaat tatgttttct caattgagac aacttaccat 5820 tcaattgaag aaggttacat cttgaatttc actattcaat gaatggatat tttccaatgc 5880 atgcatcttt agatgcattt tatttctaaa atttattact ctattctatt atattacatt 5940 cttaaaattc atgcttaggt catgaagaca tatttatata tgtagattgt tgttaccttc 6000 cttttaaact attttgtaat ataagaacta cattaaaatg gttggactaa tgcgttgcaa 6060 agcaagcgcc aaccgctagt 6080 // ID Gypsy-20_PIT-I repbase; DNA; PLN; 8765 BP. XX AC AATU01002124; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PIT_; KW Gypsy-20_PIT-LTR; Gypsy-20_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8765 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002124; Positions 139698 148462. XX CC 'CGAA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 97..2391 FT /product="Gypsy-20_PIT-I_1p" FT /translation="MVKGSATPSDGSPATAGGSPLVESDPADQRLIAMTME FT VGRTVQFDEDGQDQESENGDASEGEYEEKAETAELGETKTTAELLGEVEEL FT TLQMGRMGAPRPVERNLSAELDEGADDEEDEEDHGVAQGDRPPLIPKATRN FT ADTPSANKVLARLGEEMRTRSEWMMMFAPVAMAQAKWPMLGPELTQPVRAA FT NIDQLVEETVLLLKAMGYRCNSRPNSLILSDWSLTRGGAELWQWKKKLRVA FT FGLENAPGGTKKVYSRVAEFKPLDEDPSKIPLPKTPETKRREVFRATQGTP FT YFEDSHMLTPLKLNPTQRAPSRGQRNVGRYRELYDAADEAEAYEEDEEDGD FT AFDVRGNREETVKDYIRNLSFDAAEEDSTQYLEVRTHASLDKIAEFEGKRY FT RSDASLQWLKRFIYEMKSTRMPQSAWCEPFSLCLGRAAKSWYRQLPKKTQR FT RWKLLSEAFLDYYCSQFDQSARTRYYSARRKVNEPICDFLIRLNGYARTAK FT IQYERGGADAADHVEHFLLHCGDDDVMDLMYPLQLEDISKVEQIINRRILG FT EKRKKQRDRLVTARSRDDKRKDQSRRDEKRSRKEENRDRRVTVVDADSDGE FT ELIDQNPPSPYNSEDEWDDEYQSGGHDSAEDDDYIDAGVSNDKGNTPDRRE FT NSAGDQKGSNRSWGNSANRPPRPYNQREQSNRGDGSRDNTQRGPCAACGRM FT GHSAHYCRRRCKFCRQVHEGGQRELFRQYEKLAAFVKNSVDKSQVPEDLQN FT LYAPSDLNSAARQH" FT CDS 2514..7250 FT /product="Gypsy-20_PIT-I_2p" FT /translation="MCEIDGIERELGELDDNNRAIASVTRQSDQAVHRTRI FT MKLLPGERLGWWSAQTFDRRVRMRALVLGAVNDRRTKILLDTGANVSAISE FT YFARKLRLKRVASRDKRIDIQGISKDRMVTTSRAVVKVTLGWEVAYEFEVW FT IMPHHAGVDLILGTDFMIPAGIRLDLYNSAVKLPDEMVIPLIRSSNAPTKT FT EFGPNVPCGPPDGLTIESRMTAEFKLPRRQPSESTHDLWVRRTKGWIPTVV FT FNRRGRPTHVLITNVRQTSVWCPPHFYVIKWQPHGVLANEGYVRVNSAKYR FT DWQILAFESAMDKDLLQKEQRLYDDWLSHQPPAVERRKYPTPTAVERRSPV FT ESGPELTCAERWRRIEADTEAGDYEKRRGNADVISTSGVTRGDPAINSAFK FT LEDVRADHTSALHDGQDVSYQLSKFEDDGAISDVNTNSAVEGAGEVRATED FT ASATEDSAITAGGLEERSEQALCDVEPVADNRAKYGIIGPSSAAVVNSAMG FT TPETCIIQSAAADSTSEDLNTESASDMVTACRQDVSYTEGAFTRTEVSSAV FT TTNSADEHSNATKDHDGREVLLPERIKPNDDPATADSALETMEAETGSEVV FT RQHDDDTIYLGDKFEHAGARSAIAVNSANTGPDAGDTYDLSEVSLLRGTGT FT EIGVTSSATMVFDPGGTGYRLERAVDEETASQNAGHFSGTDPKTVTELATA FT ELNWEDDDCNESLKYLAPPFKNSATVRISPALLYARIPADFAGCVLSFDGS FT AKTAKYGGYGSCSWILWRLPNWDIEIAASAYLSSTTVNIAEYTGMNNGVLA FT AIDRGITDLIIVGDSRLAIQQSMGVIACKKETLQVELARHKDLTKQLNSVR FT YRHIARHYNAAADSLATEALEAKAGRVILGADRKAELRMINRVAEELYVTG FT NPAETPIVTAVTRSRVRRVHFEDELDVDSARARGGSQDHEAMSTNPGESAF FT ESSGDEFEQVSGASTRRTNHTTPNVETRSQMESVQTAQNANDIDPVTVQTE FT RRRRIAKAQDEELRWADLKAYLRGEVENLTHRRAQNAGKVAEVFVLSEDGL FT LYRRDEARRLGELGEPNLSLRLVIPSTMVDEILHNCHNSIEGGHQGIVRTY FT HRVKADYYWIGLYADVVKHVRACEDCNTSKSKPQLRGYSPGNVVSDHPFQV FT VSMDFVIPLPRTQRGNTALLLFQDHFTGFVIAKAMNDTGALEVAKVFEECV FT FRQFGAPSLIRHDRDPRFMSEVFQKFSEMMQSRSRATLSYRPQANGQQERS FT VKTMVQTIRVYVEDPLQADWDDIAEKMVHAINNSRDSTRRETPFYLVHGWD FT AKSTLKAMTSSIRRGQGRPVNSADAVEWRREANRQREVALRLAAEFQVREK FT ARRAREHNEALSKKEKRSIPNTADDEDEVAEPGDESTKSLFKEGDQVWLFM FT ERVKSGLTKKLAHRWHGPFRVKKKVEEFAYELELPDKSGYRFYPVVHVSRL FT KAVTELGGRPKTRLIADLEETQRFDFDEELLPEDSWEPDTSTNQYEVEAIL FT DDELPLPTSTTRSQRKFKVKWVGYDEPTWEPLSNLSCGGLLFDYLRQKKRE FT NRLQMVQVADED" XX SQ Sequence 8765 BP; 2403 A; 2166 C; 2598 G; 1598 T; 0 other; actggtgccg cgacccggga acaggagtgt gtgcttgttt ttataggtgc cagctaacca 60 agttaagagg aagagaagag aaagagaaga gtgaagatgg tcaagggatc agcaactccg 120 agcgacggaa gcccagcgac ggctggagga tcgcctctcg tggagtcgga cccggcggat 180 caacgactca tcgccatgac gatggaggtg ggacgaaccg tccagttcga cgaggatggc 240 caagaccagg agagcgagaa cggagacgca agtgaaggag agtatgaaga gaaggccgag 300 accgctgagc tcggagaaac gaagactacc gccgagctac ttggcgaggt ggaagagttg 360 acgctgcaaa tgggacgcat gggagcccca cgtcctgtcg agcgcaattt atccgccgag 420 ctcgacgaag gtgcggacga tgaagaagat gaagaagacc atggcgttgc tcaaggggac 480 cgtccgcccc ttattccaaa agcgacgagg aacgccgata cgccgagcgc caataaagtg 540 ttggctcgac tcggcgagga gatgagaacg agatcggaat ggatgatgat gttcgcgcct 600 gtggcgatgg cgcaggcgaa gtggccgatg ttgggtcccg agttaactca gccggtgcgt 660 gcagccaaca tcgatcagtt ggtggaagaa actgtgttgc tgttgaaggc gatgggctat 720 cggtgcaaca gtcgaccaaa cagcctcatt ctgtccgact ggagtctgac ccgtggcgga 780 gccgagctct ggcaatggaa gaagaagctc agagtggcgt ttggattgga gaatgcccct 840 ggcggaacga agaaggtgta cagccgagta gccgagttca aaccactcga cgaggacccg 900 agcaagattc ctttgccgaa aaccccggag acgaagagac gtgaagtgtt ccgcgctacg 960 caagggactc cgtacttcga agactctcac atgctgactc cattaaagct aaacccgact 1020 cagcgagcgc cgagtcgtgg gcagcgaaat gtaggtcgtt atcgtgaatt gtatgacgct 1080 gcagatgagg ctgaggctta cgaggaggat gaagaagacg gcgacgcctt cgacgtgaga 1140 ggcaaccgtg aagaaaccgt gaaggactac attcgaaact tgagctttga cgcggctgaa 1200 gaggactcga cgcagtacct agaagtccga acccacgcct cgctcgacaa aattgccgag 1260 ttcgaaggaa agcgctaccg ctctgacgcg tcgctccagt ggctcaagcg gttcatctac 1320 gagatgaaga gcaccaggat gccccaaagt gcatggtgcg agcctttctc gctatgcttg 1380 ggacgcgcgg cgaagagttg gtacaggcag ctgccgaaga agactcagcg acgttggaaa 1440 ctactcagcg aggcgttcct ggattattac tgctcacagt tcgaccaatc cgcccgcact 1500 cgttactact cggcgagacg taaagtcaac gaaccgatct gcgacttcct gatccgactc 1560 aacgggtacg ctcggacagc caagatccag tacgagaggg gtggcgccga cgcagctgac 1620 catgtcgaac acttcttgct gcattgtggt gatgacgatg tgatggattt aatgtacccc 1680 ttgcagttgg aagacatcag taaggtggaa cagataatca atcgtcggat cctcggcgag 1740 aagcgtaaga agcaacgcga ccgactcgtg accgcacgaa gccgagatga caagcggaag 1800 gatcagagcc gccgagatga gaagcgcagt cgcaaggaag aaaaccgcga ccgccgagtc 1860 actgtcgttg acgctgactc cgacggagag gaactcatcg atcagaaccc gccgagtccg 1920 tacaactccg aagacgaatg ggatgatgag taccagtccg gaggacacga ctcagcggaa 1980 gacgacgact acattgacgc cggcgtttcc aatgataagg gaaatacacc ggaccgccga 2040 gagaactcgg cgggagacca gaaaggctcg aaccgaagct ggggaaactc agcgaaccga 2100 cctccgcgac cgtacaacca acgagaacag tcgaatcgtg gagatggatc acgcgacaac 2160 acccaacgag gaccttgtgc agcttgtgga agaatggggc actcggctca ctactgtcga 2220 cgacgctgca aattctgcag acaagtccat gaaggcggcc agcgtgagct gttccgtcaa 2280 tatgagaagc tggctgcgtt cgtgaagaac tctgtcgaca agtcgcaagt gccagaagac 2340 ctgcaaaacc tttacgcgcc gagtgattta aactcggcgg cccgccaaca ctgactgggt 2400 tggaatatgc cgggctgcca cagtcagctg aacctgcagt tgaggcgaac ttcttgtttg 2460 ccttcgtagg tgaagcagga cggcccgagg gaagaagcgg ggatggcaat tggatgtgtg 2520 aaatcgacgg aattgaacgt gagctcggtg agttagatga taacaaccga gcgattgcaa 2580 gtgtaactcg gcagtcagac caggctgtgc atcgtaccag gataatgaag ctgcttccgg 2640 gagagcggct gggatggtgg tcagcacaga cgtttgatcg ccgagttaga atgagagccc 2700 tcgtattggg tgcagtgaac gaccgaagga ccaagatatt attggatacc ggagcaaatg 2760 tctcggcgat cagtgagtac ttcgcgagga aactgcgtct caagagagtg gccagccgag 2820 ataagcgaat tgacatacaa ggaataagta aagacaggat ggtgacaacg tcaagagcag 2880 tggtgaaggt gacactcggc tgggaagtgg catacgagtt tgaagtatgg ataatgcctc 2940 atcatgccgg agtcgatttg attctcggca ccgactttat gatcccagct ggaatacgtc 3000 tggatctgta caactcggcg gtcaagctac ccgatgagat ggtgatacca ctcatccggt 3060 caagtaatgc accgaccaag accgagttcg gaccaaatgt accatgcggg ccaccagacg 3120 ggttgacgat cgaaagtcga atgaccgctg agttcaaatt acccaggcga caacccagtg 3180 agtcgacgca tgacctatgg gtgcgacgga cgaagggttg gattccaacg gttgttttta 3240 atcgccgagg aagaccaacc catgtcctga ttacgaacgt acgacagacg tcagtctggt 3300 gcccacctca cttttatgtg ataaaatggc aaccacacgg agtgctggcc aacgagggat 3360 atgtccgcgt gaactcggcg aagtaccgtg actggcagat attggccttt gagtcggcga 3420 tggataaaga tttgctgcag aaagaacaac gactgtacga cgactggttg tcacaccagc 3480 cgccagctgt ggaaagacga aaatacccaa ctccgacggc ggtggaaaga cgatctccag 3540 tggagagtgg accagagtta acatgcgccg aacgctggag aaggatcgaa gccgacactg 3600 aagccggcga ctacgagaag cgtcgcggta acgcagacgt catatcgact tcaggggtga 3660 caaggggtga cccggctata aactcagcgt tcaagctgga agatgtccga gcggaccata 3720 cgtcggcgct acacgatggc caagatgtct cctatcagct gtccaagttt gaagacgatg 3780 gcgccatttc tgacgtcaac acgaactcag cggtcgaagg agcaggtgaa gtaagggcca 3840 cggaagacgc gtcggcgact gaagactcag ctataacggc aggaggcctt gaagaacgct 3900 cggaacaagc cctatgtgac gttgaacccg ttgctgacaa ccgagccaag tacggaataa 3960 taggaccaag ttctgcagcc gtggtgaact cagcgatggg tacaccggaa acctgcatta 4020 tccagtcggc ggcggcagac tcgacgtcag aagatctaaa cactgagagt gcctcggaca 4080 tggttacagc atgtcgtcag gatgtcagct atactgaagg cgcgtttaca cgcacggaag 4140 tcagctctgc cgtcacaacc aactcagcgg atgagcactc caacgcgacg aaggaccatg 4200 atggtcggga ggtattacta cctgaaagaa taaagccgaa cgacgaccca gctacggcgg 4260 actcagcgtt ggagactatg gaggctgaaa ccggttcgga agtggttaga cagcatgacg 4320 atgataccat ctacctcgga gacaagtttg agcacgcagg ggccagatcg gccatcgcag 4380 tgaactcagc gaatacgggc cctgacgcgg gcgacaccta tgatttatca gaggtatcac 4440 tgttgagagg tactggaact gagatcggag taacgagctc ggcgacgatg gtgttcgacc 4500 ccggcggaac tggctacagg ttagaacgcg ctgtggatga agaaacagct tcgcagaacg 4560 caggtcattt cagtggtaca gatcctaaga ccgtgaccga gcttgccacc gctgagctca 4620 actgggaaga tgatgattgc aacgagtccc tgaaatacct cgcgcctccc ttcaagaact 4680 cggcgacagt aagaataagc ccagcgctgc tatatgcccg aataccagct gactttgcag 4740 gatgcgtgct gtcatttgat ggctcagcga agacggctaa atacggcggg tatggcagtt 4800 gttcgtggat actgtggcgc cttccgaatt gggacattga gatcgctgcg agtgcgtacc 4860 tgtcgtccac cacagtcaac atcgccgagt acaccggcat gaacaatgga gtcttggcgg 4920 cgattgaccg agggataact gatttgatta tcgtgggtga ctcccggctt gcaatccagc 4980 aatccatggg ggtgatagca tgcaagaagg aaacgttgca agtggagcta gctcgacaca 5040 aggatctcac gaaacaactc aactcggtcc ggtatcgaca catagcgcga cactataacg 5100 cagcggctga ttctctcgct acagaagcac tggaagctaa agctggacga gtaattctcg 5160 gggcggatag gaaagcagag ctgagaatga ttaaccgagt agccgaagaa ctgtacgtca 5220 caggcaaccc agcggaaaca ccgattgtca cggcagtcac tcgtagccga gtacgccgag 5280 ttcactttga ggacgagctg gatgtagact cggctagagc aagaggagga agtcaggatc 5340 atgaagccat gtctacaaat cctggagaat ccgcgtttga aagtagtgga gatgaattcg 5400 aacaagtcag cggggcgtcg actcggcgga ctaaccacac gaccccgaat gtcgaaacaa 5460 ggtcgcagat ggagtcagtc cagacagctc agaatgccaa cgacattgat ccagtgacgg 5520 tacagactga gcggagacga cgaatcgcga aggcacaaga tgaagaactc aggtgggccg 5580 atctgaaggc gtacctgaga ggtgaagtgg agaaccttac acaccggcga gctcagaatg 5640 ccggcaaagt cgcagaagtc tttgtactca gcgaagacgg cctgttgtac cgccgagatg 5700 aagcccgccg actaggcgaa ctcggcgaac cgaacctctc attgagattg gtgataccgt 5760 caaccatggt cgacgaaata cttcataact gccacaactc gatcgaagga gggcatcaag 5820 gtatcgtcag gacttatcac cgagtcaaag ccgactacta ctggattggt ctgtacgccg 5880 acgtggtgaa acatgttaga gcctgcgaag actgcaatac cagtaagagc aagccacagt 5940 tgagaggtta ttcgccggga aatgtggtgt cagaccatcc attccaagtc gtgtcaatgg 6000 atttcgttat tccccttcct cgaactcagc ggggcaatac tgcactgctg ctgttccagg 6060 accacttcac ggggttcgtt atcgctaagg ctatgaatga caccggagca ctcgaagtgg 6120 ccaaggtatt tgaggaatgc gtcttcaggc agttcggggc tccgtctctg atacggcacg 6180 accgagatcc aaggtttatg agtgaagttt tccaaaagtt ctccgagatg atgcagtcga 6240 gatcaagagc tacgctgagt taccgaccac aagccaacgg tcagcaagag aggtcagtca 6300 agacaatggt tcagactata cgggtctacg tggaagaccc acttcaagcc gactgggatg 6360 acatcgccga gaagatggta cacgctataa acaactcaag agattcgact cggcgagaaa 6420 cccctttcta tctggtgcat ggttgggacg ccaagtctac gctcaaggct atgacgagtt 6480 cgatacgacg tggacaggga cgcccagtca actcggcgga cgcagtcgag tggcgccgag 6540 aagcgaacag acaacgagaa gtagcacttc gattagcagc tgagttccaa gtgcgagaga 6600 aagcacgacg agctcgagag cacaacgaag cgttgagcaa gaaggagaaa agatccattc 6660 ccaacacagc agatgacgaa gatgaagttg cagaaccagg cgatgaatcc accaaatcct 6720 tgttcaaaga aggagatcaa gtctggttgt ttatggagcg agtcaagtcg ggcctgacca 6780 agaagttagc ccaccgatgg catggaccat tcagggtgaa gaagaaggtg gaagaattcg 6840 cctatgaatt ggagttaccc gacaagagtg gatataggtt ctacccagtg gtccatgtat 6900 cacgtctgaa ggcagtcacc gaactcggcg gaagaccaaa gacgaggctg atcgccgacc 6960 tcgaagagac tcagcgattt gactttgatg aagaattact gcctgaagac agctgggaac 7020 cagacacaag tacaaaccag tatgaagtcg aagcaattct cgacgacgag ctaccattac 7080 ccacaagtac gacacgatca caacggaagt ttaaagttaa gtgggtcggc tacgatgagc 7140 ctacttggga accactgtcg aatttgtcat gcggaggtct cctgtttgac tatctacgac 7200 agaaaaagcg cgaaaaccgt ctgcaaatgg tgcaagttgc agatgaggat taacagctat 7260 tgcaccaaaa gttacaccaa ctcggcggac gacacaggcc gagttgagat ggaatgctac 7320 tgtgtcgaaa ctacatatac tgaataatta cgaaatgaag tcctgaacga tacctacggg 7380 acgcccagtc aaaggaagaa aactaaaaag tcggcgatcc ggattccaag tgagttgaac 7440 ccgacggaga caactgggaa gagctcagcg gactcgacga ttgggggcgt ggcgtcgtag 7500 cagacgtcat cccttaggaa cttgcggaag gagatgcaac attcgcagcc gtggcaagaa 7560 ggatcatcgc cgagctagcc aacgaagctg acgccgaaca aggtgcctca ggacccgacg 7620 cggcggaagt gggctgagga tccgttccac tggggagtgg ggtgccgaac ggagacatac 7680 tcggagacgc gcctcggaga ttgggagaac ccaacccatc gtccgccgag tcgtcatcag 7740 acgcactctc gccatctgag ccgagctcac cgatcgaaga cccagtgaag atatggatgc 7800 cttgacgatt cagccgagtt ggagcacccg gggcataggc agaaggcgct tgttcagcaa 7860 gatcgaaatc ttcttcaatc gcgttgtcaa caacctgagg gtccataccg cgcggagcga 7920 aaagctacag cctttcgcag cgacgcgagg agattagccg attgcgtagc agcagcctcc 7980 aatcgagaca cttgctgttg agccgacgag agctgaattg acaagtcgac attgctgaga 8040 gcaagcgagt ccagtcgccg agtcagtgcg cggttctcct cctgaacagc ttgattgtca 8100 gcttggagat cgccgatgat ctttggataa tcaagagcgg cgtagttgcc tttcaagata 8160 tccaacagtt cccccgcgga agcagcatgc aaaatcgctc gccgctgcac gggatcggag 8220 ggctccacgg aacgagtaaa tccgtaagcc atgagcctcg ccaagaaggt caattcttct 8280 cggcgatcat gcccttgctc gttaattctg gccatgaggg agtcaagact cactggagca 8340 gccgagcttg gctgattggt ggcgcccgaa gtggtgtcgc ccggcaagct cggtggacca 8400 ggaaggcgca cgcgagaaga ctctgccgac tccgcgtcag actcatggga agttgtcagg 8460 tcgaccagcc cagcttcatg ccggtcgctg accccacgag taccgacggg tcgaggaatc 8520 gactcagctg gcacgccttc acctcgacga ggagttggag aagaaggatg gttccacggg 8580 ttgtgctaga acaacatgcg aagagtaagg agctgccaag tgagtgacag cggaagcaac 8640 gaacgtacca aagaaggtgg tggggagccg cgagacgtca tcagccgagt acggaccaac 8700 ggtggcagaa caaaatgaag gattaagaca ctcaccagct cggctcgtat cataaccggg 8760 gcagt 8765 // ID Copia-46_PIT-I repbase; DNA; PLN; 4825 BP. XX AC AATU01004713; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-46_PIT_; KW Copia-46_PIT-LTR; Copia-46_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4825 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004713; Positions 18741 23565. XX CC Positions [1743-2279] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS join(6..1406,1410..4340) FT /product="Copia-46_PIT-I_1p" FT /translation="MSPTMLNKGNGDSEAKKAEVEWNKDGRPVNWNGRNWP FT LYKRTMMRYLTCYNVEDNGWRLDDICDGSVEYRNTNGNEEEQRLMRQDQLP FT AKLIASSLSCTLAQKVMRLDYGSDMWNYLATRFEGRENEMTTLYTQRAVRQ FT KLESASCRPGADVENHLLYMMGLREQLVVLDADVSDSWMVDFMARSVSQLP FT FYRVLRTLMLTGGLHTMKTPDQVKSMILVLDKKELVDKQSQVRINPDVRDE FT AGGGRQGGRSNGGKPMPKYQNRNKDRSTINSDGSQKYSGYFKRRTDEQQRQ FT YEEDRENKSCFGCHQPGHTRRNCPEEMKPEPKSQNGSSVGNVRNHANFTHS FT SGVASREPQGPAQKQEGRAYSREASQSKKGTAKYQQKLEYHNGATQQLAGD FT KRYFVNYRDLTLEEQDRATAHGYNGKSTPIGIGSIDLWVNVNDNPVVLRVE FT NVYYSPQRTNLLSQSAATEQGFTSYDDSTREYTLNMNGEVALKVQVQPSKL FT WTFTADNSFLPGKKSEENQSAPKTMINYAISDGVADLQSWYERLGHICPRF FT VKQMADQNLVEGMMLRKRDFDMCEACQLGKQRAKTPLKQLDRGVKRRNRLV FT FADLLFPPSHYNCTRFKAVLVIMDAHTRFKTIYPVQTKQKEEINALMKRYV FT VWAERQSPEWKVNEIITDGGGEFENGQITTWYQEHGIIHTVIPPKTSRLNM FT VERTHQTISGMMKTMMKESGFPTSFWIEALYYAVYLKNRSLSSSINCTPYE FT GMWGRRPDIHHIRKFGALVYAHTKVGPSRHKFADNCKIGFVLGYRDGVLGC FT KVYFPAEGSVLIAGEITANERVLYKDRHHTDFDRRVRDWVLAERPDLTSAG FT RHDYDLPVVGGSDGDSSNDTVDTEQHSSRSVGPSVREPPWLRKPLPSFGNT FT MAVHPEVGRRKRVSDSIKHIRFAVDDDSEPNTSTCQETVDSSLEEESEDLD FT QEAEEQFEYAELIARSLLDDVDENTLSDGSKDGAEKEKKQRLKRGMKEFAE FT PEEEDLTADEMQVYAALTAIALITETPTQPQQRTWHISELKVPRTVSQAMN FT APQRAEWWKEMEKEVSAMVEKDVLELVPETDIPIGMKTLETMWRFQPKTDD FT FGNILRYRSRLCAFGDKEVPGIDFSVLDTFSPVARMASFRLFVALCQIYRL FT VAHQGDINTAYLNAPKKQLAFIRRIIGFPLKPGWVYKVKNAFYGLHESGRE FT WYEELHSWLSEKGMERSTTEPCMYFRFEGQSIALLLIYVDHFIYATNNPSW FT KTTFFADIDAKYGIKDLGRLGNYLGVQVEWQDDGVLLHQTKYAKDILKRFG FT FADAVGCRSPMDTTVKLEAAKEGDKEPGLPYREVIGALMYLATSTRPDLAF FT PVGYLSRHVQHPNAAHAGALKRILRYLVATSDHGVLFKNQDNEAAEKLEID FT GYVDADWGNCPDTKKSVTGYVMMMAGGPVT" XX SQ Sequence 4825 BP; 1475 A; 1013 C; 1297 G; 1040 T; 0 other; gggttatgag cccaacgatg ctgaacaagg gaaacggaga ctcagaagcc aagaaagcgg 60 aggtagagtg gaataaagat ggccgtccag tgaattggaa tggacgcaat tggcctcttt 120 acaagcgcac catgatgaga tacctgactt gctacaacgt agaggacaat ggctggcgtt 180 tggacgacat ctgtgacggt agtgttgagt accgaaacac caatggtaac gaggaggagc 240 aacgattaat gcggcaagac cagttacccg ccaagttgat tgcaagttca ctatcgtgca 300 ccctcgccca gaaagtaatg cggttggact acgggtcaga catgtggaac tacttggcta 360 cgcgctttga agggcgtgaa aacgagatga ctacactgta cacacaacgt gccgttcgtc 420 agaagctcga aagtgcatca tgtcggccag gtgcagacgt tgagaaccac ttactgtaca 480 tgatggggct acgcgaacag ttggttgtac tggatgcaga cgttagtgac tcttggatgg 540 tcgacttcat ggctcgatct gtgtcgcagc tgccatttta cagagtgttg agaactctca 600 tgctaactgg aggcctccac acgatgaaga caccagatca agtgaagtca atgatcctcg 660 ttctggacaa gaaggagcta gtggataaac aatcccaagt tcgaattaat cccgatgtac 720 gagatgaagc tggaggcggt cggcaaggtg gccgcagtaa cggtggcaag ccgatgccaa 780 agtaccagaa tcgtaacaag gacaggtcta ccataaacag cgatggcagt cagaagtact 840 cgggatactt caagagaaga accgacgagc agcagcggca gtatgaagaa gatcgagaga 900 acaagagctg ctttggctgt caccagccgg ggcacactcg aagaaactgc ccagaagaga 960 tgaagccaga gccgaagagc caaaatggca gtagtgtcgg taacgtccgc aatcatgcca 1020 acttcactca ttcgtcgggg gtggctagcc gcgaaccaca aggacctgcg caaaagcagg 1080 agggacgcgc ctactcacga gaagcttcac agtcgaagaa aggcactgcc aagtaccaac 1140 agaagcttga ataccacaat ggagcaacac agcagttggc cggagataag agatactttg 1200 tcaactaccg tgatctaacg ctagaagaac aagatagagc tacagctcat ggctacaacg 1260 gcaagagtac tccaatcggc attggatcaa ttgacttatg ggtcaatgtt aacgacaatc 1320 cagtagttct tcgagtcgag aacgtatact attcgccaca acggacaaat ttgctctccc 1380 agtcggcggc aacggagcaa ggattttaaa cctcatatga cgactcgacg agagaataca 1440 cgttgaatat gaacggtgaa gtagcactta aggtgcaggt acaaccgtcc aagctgtgga 1500 cgttcacagc agacaactca ttcttaccag ggaaaaagtc ggaagaaaac cagtcagcgc 1560 caaagacaat gatcaactac gcaataagtg atggcgtcgc agacttgcag agctggtacg 1620 agcgactagg ccacatctgc cctcgatttg tgaagcaaat ggccgatcaa aacttggtcg 1680 aagggatgat gttaagaaag agggactttg acatgtgtga agcctgtcaa cttggaaaac 1740 aacgcgcaaa aacaccattg aaacaactag atcgtggagt gaaacgacga aaccggttag 1800 tgtttgccga tctgctattt ccgccaagtc attacaactg tacgcgtttc aaggcagtat 1860 tggtgataat ggacgctcac acgaggttta aaacgattta tccggtgcag accaagcaga 1920 aggaagaaat taatgcactg atgaagcgat atgtcgtttg ggctgaaagg caatcaccag 1980 aatggaaggt gaatgagatc attacagacg gcggtggtga gttcgagaat ggacagatca 2040 caacatggta ccaggaacac ggcataatac ataccgtcat accaccgaaa acatctcggc 2100 tgaacatggt ggagcgtacc catcagacga taagtggtat gatgaagaca atgatgaagg 2160 aatcgggctt cccgacgtca ttttggatcg aagcactgta ttatgcagtg tatcttaaga 2220 atagatcact ctcaagttca attaactgca cgccgtacga aggaatgtgg ggaagacgcc 2280 cagatattca ccacattagg aaattcggag ctctagtcta cgcacacacg aaggttgggc 2340 cttcacgtca caaatttgcc gacaactgca agattggatt tgtgctcggc tatcgtgatg 2400 gagttcttgg atgcaaagtc tattttcctg cagaaggttc agtattaatt gctggagaaa 2460 tcactgccaa cgaacgagtt ctatacaaag atcgacacca cactgatttt gatcgccgcg 2520 taagagactg ggtgctagct gagcgaccag atctaacaag tgcaggccgt catgattacg 2580 acttaccagt cgtagggggg agtgacggag atagcagcaa tgataccgtc gataccgagc 2640 aacatagctc aagatctgtt ggaccaagcg tcagagagcc gccatggcta cggaaaccgc 2700 tgccaagctt tggaaacacc atggcggtgc atcctgaagt gggtcgtcga aaacgagtta 2760 gtgacagtat aaaacacatc agatttgctg ttgacgatga tagtgagcca aatactagca 2820 cgtgtcagga aacagtggac tcgagtttgg aagaagaatc agaggatctt gaccaagaag 2880 ctgaagagca atttgaatac gcagaattaa ttgcaagatc gctgctcgac gacgtggatg 2940 agaatacgct tagtgatgga agtaaagatg gtgctgaaaa ggagaagaaa cagcgcttaa 3000 agaggggtat gaaggagttt gcggagcctg aagaagaaga tttaactgct gacgagatgc 3060 aagtgtatgc tgcgctaacc gcgattgcac ttattacaga gacgcctacg cagccacagc 3120 aacgcacatg gcacatttcg gagttaaaag tcccaagaac agtatctcag gcgatgaacg 3180 caccccagag agccgaatgg tggaaagaaa tggagaaaga agtgtcagca atggttgaaa 3240 aagacgtact tgagctggtt ccggagacgg acatcccaat agggatgaaa acacttgaga 3300 cgatgtggcg atttcagccc aagactgatg attttggaaa tattttgcgc tatcgctctc 3360 gcctctgtgc ttttggagac aaagaggtac caggtattga cttcagtgta ttggacacat 3420 tctcacctgt ggcgcgaatg gcttcattca gattgtttgt tgcactttgc caaatttacc 3480 gattggttgc ccaccaaggt gatatcaaca cagcctacct gaatgcaccg aagaaacaac 3540 tcgcattcat tcgacgaatc ataggattcc cactcaaacc aggatgggtt tacaaggtga 3600 agaatgcgtt ttatggtttg catgaaagtg gacgtgaatg gtacgaagag ctgcacagtt 3660 ggctgagtga aaaaggaatg gagagaagta cgactgaacc ctgcatgtat ttccgatttg 3720 aagggcaatc tattgctctc cttcttatct acgtggatca ttttatctat gctacgaaca 3780 acccgagctg gaagacaacg tttttcgcag acattgatgc aaagtatggc atcaaagact 3840 tgggtcggct aggaaattat cttggtgtac aagttgaatg gcaagatgat ggtgttttac 3900 ttcaccagac aaagtacgcg aaagatatct tgaagcgatt cgggtttgca gacgctgttg 3960 gttgccgatc accaatggac actacggtca agctggaagc tgcaaaagaa ggtgataaag 4020 aacccggttt gccgtatcgt gaagtaattg gagcattgat gtacttggcg acaagcactc 4080 gcccggatct tgcttttcct gttggttatt tgagccgtca tgtacagcat ccgaacgcag 4140 cacatgcagg agcattaaag agaattttac ggtacttagt tgcaacttcg gaccatggcg 4200 tgctctttaa gaaccaagac aatgaagctg cagagaagtt ggaaatcgac ggatacgttg 4260 atgctgattg gggcaattgc ccggacacga aaaaaagcgt aactggatat gtgatgatga 4320 tggcgggagg accggttacg taagctgcgc gacggcaaac aattgtggcg ctaagcactg 4380 cagaagcaga atatgctgcg gcttgtgagg cgtgtcaaga aggagctgct attaagaaca 4440 tcttgtcgga gattgtcggt aagagcactc tgacatttaa acttggaatt gacaaccaag 4500 cagcgatttc actagctact caccccacgt acagcagaaa gacacgtcat attgagttac 4560 gtctacacta cgtgagagat atggttcgac agaaaggtgt tatactatgg aacgtgaaag 4620 gagacgaaca tcctgcgaac cttctgacga aaccaatggg gttgacgcgg cttgatagga 4680 caaagaccat catcggtatg aaaccgaaga tcagcaagac tcgccgtgaa accgaaagag 4740 agaagtatcg tgaggaagta ctgtgtggga gcagagtgaa gagagatgaa gattagttcc 4800 gagagagcta tctcggaggg cggcg 4825 // ID Copia-49_PIT-LTR repbase; DNA; PLN; 220 BP. XX AC AATU01006355; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-49_PIT_; KW Copia-49_PIT-I; Copia-49_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-220 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006355; Positions 18497 18716. XX SQ Sequence 220 BP; 44 A; 50 C; 51 G; 75 T; 0 other; tgtgaagtat tgagcaacga cagttgaggt gtgtcgtgtt cctggctcta cttgtccctg 60 attgaacaag tcggtggctg ctagctagtt acttcttgtt tgtattgcat agtttattct 120 actgataact ggagtctgtt ctcctggata gagctcccac aatcccaaat tatcgctgtg 180 ggcgaatcgt gtcttctcgt cacgtcctct actaatcgca 220 // ID Copia-32_PIT-I repbase; DNA; PLN; 4223 BP. XX AC AATU01001594; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-32_PIT_; KW Copia-32_PIT-LTR; Copia-32_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4223 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001594; Positions 11490 15712. XX CC 'ATTCT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 786..2348 FT /product="Copia-32_PIT-I_1p" FT /translation="MKRDCPATKKGSQDDAVFAVGGERSAGWLIDSGATSH FT MTPHRNDLFKYKSLDTSMEVTIADGKKLHVAGTGTVKLTGLDGRRIRMVDV FT LHIPGLDRRLLSVGKLAERGMNVEFQRSSCVIWGWNAAIASGKKVGKAFLL FT DCQQEEVRFVEYADADSEWELWHARMSHPNKDALTKTQRSTTGVPPVRRGC FT ETLCGGCMKGKQTVTAFPSRSLTKTTRVLELVHTDVMGPMRTLSKGGAKYV FT LTFVDDYSRYVVTFFMKSKSDVGSKLKEFKALYENQWGERLKCLRFDNETE FT FVNKTVLELFELNGIVHQRSVPYSPQQNGVAERMNRTIMEKARSMLHYKSM FT STEWWAEAVSTAVYLINRFTNTSNSDVTPYELAFQVKSRMEHLRVFGSQGY FT AHVDDVKRTKLEPKSFRCTFLGYAENVKGYRVYDLDASKVKVSRSVKLDER FT EVGGIYDTPSPASGTIIHVTRNDADTVVPAPEVERQSVQDEPMEEAEEPAQ FT DIEMDDVEPERNAELPQLPAPEERR" FT CDS 3147..4124 FT /product="Copia-32_PIT-I_2p" FT /translation="MYVKRSRDAFVYVCLYVDDMIIAAKPRGEIREVKGAL FT KRAFKMKELGEAKFILGMEIDHDKAAGTLMIKHTRYIDGIVERFNQRNAKL FT LDNPCASNMKLSKMMSPATEKERREMQSRPYRSLIGCMMYITTCTRPDIAY FT VVTQLSRFLENPGTQHWKAAIRVLQYLKTTRQHGIVYQSGTQDVKAEAFTD FT ADWGSNIDDRRFVSGVMVMIGNAPVVFKSKYQRMVALSSAEAEYMARSMCT FT QEVLWTRAILKDMGHQQVERPRSGRTIKVLSHSRVTLGITLGPSTWISDIT FT SFGRMWSALRSRWTTSTRSANLRTCLRRRLERSR" XX SQ Sequence 4223 BP; 1097 A; 1002 C; 1282 G; 842 T; 0 other; ggttaacagc cgcaacctca actcgaccgg aacgctccac gcaggaacgc tccagaaacg 60 gaacgctcca cgcaagaacg ctcaagacca tgacgactac caaacgtgcc gaagtcctcc 120 tcgggagtgg gaactacttc cattgggagt acaatatgcg catgacgcta gccagaaagg 180 gcttgcttgc gcatattcaa gtcgtcacgc ctgagaacga gatcacagag gcgtggatcg 240 tcaacgattc caaggcgctt ggcatcatcg cccagggtgt ggaactccag caccagacca 300 agacccggtc ggcgacgcgc tccatggaag catgggaaac gctccgggag ttctacaatc 360 gcaccacgct ccacaaccgc gtgacgatga cgcgtcgact gcacgagttt aagatggaga 420 gcggatcgtc tatggccaag catctggatg cgttcgatga gctgatcgtc ggtttgcaga 480 cgctgggaga gcccatggac gaggtacgtc agctggtggt actgctgagc agcctccccg 540 ccgaatacga actcatatcg tctatcgtgg agaacgccaa gggtgtgacg ctcatcgagg 600 ccaaggagaa gctgttgaag gagtatgagc gactggagaa gaaggaaacc acggagaagg 660 cgttctaagt gaatgggaac gcaggcaagt tccgaaacgg ccgagggaat ggtcgaaagt 720 ggaacgcccc gaagcggaac gttggtttca agggcaagtg cttcaactgt gaccacgtgg 780 gccacatgaa gcgggactgt cctgctacga agaagggtag ccaagacgat gcagtgtttg 840 cagttggtgg ggaacgctcg gccgggtggt tgattgatag cggtgcgacg tcgcacatga 900 cccctcaccg gaacgacctg tttaagtaca agtcgttgga cactagcatg gaggtgacga 960 ttgcagacgg caagaagctg cacgtcgcag gaactggaac ggttaagttg actggtttgg 1020 acggtagacg catccgtatg gtggacgtgc tccacatccc cgggctcgat agacgcttat 1080 tgtcagtcgg gaagctcgcg gaacgcggta tgaatgtgga gttccagcgt tccagttgtg 1140 taatttgggg atggaacgct gcaatagcgt cagggaagaa ggtcggtaag gcgttccttt 1200 tggactgtca gcaggaggag gtccgtttcg tggaatacgc cgatgcagac agcgagtggg 1260 agctttggca cgctcgcatg agtcacccca acaaggacgc actgacgaag acccagcgtt 1320 ccacgaccgg tgtcccgcca gtaagaaggg ggtgcgagac tttgtgcggt ggatgcatga 1380 agggaaagca gaccgtgacg gcgttcccgt cacgatcact gacgaagaca acgcgtgtgt 1440 tggaactagt acacacggac gttatgggac caatgagaac gctctcaaag gggggtgcca 1500 agtacgtgct gacctttgta gacgactact caaggtatgt cgtgacattc ttcatgaaga 1560 gcaagagtga tgtgggcagc aagctgaagg agtttaaggc gctgtatgaa aatcagtggg 1620 gggaacgatt gaagtgcctg cgtttcgata atgaaacgga gtttgtaaac aagacggtat 1680 tggaactctt tgagctgaat ggtatcgtgc atcaacgcag cgttccatac agccctcagc 1740 agaacggtgt tgcggaacgc atgaaccgta ccatcatgga gaaggcacga agcatgctac 1800 actacaagtc tatgtcgacg gagtggtggg ctgaagcggt gagtactgca gtgtacctta 1860 tcaaccgttt cacgaacaca tccaactcgg atgtcacgcc atatgagttg gcgttccaag 1920 tgaagtcacg gatggaacac ctacgcgtgt ttggatcaca agggtacgct cacgtggatg 1980 acgtgaagag aacgaagctg gagcccaaga gcttcaggtg cacgttcctc ggatacgcag 2040 agaacgtaaa agggtatcgt gtctacgact tggatgcatc caaggtgaag gtgtcacgat 2100 cggtaaagct ggacgagcgt gaggtgggcg gtatctatga cacgccgtcg ccagcttctg 2160 gaacgatcat ccatgtgacg aggaacgatg ccgataccgt ggttccagct ccagaagtgg 2220 aacgacagtc tgttcaagat gaaccgatgg aagaagcgga agaacctgct caagacattg 2280 agatggacga tgttgaaccg gaacggaacg cagagctacc acagctaccc gcaccggagg 2340 aacgccggta gagtcgactg gaactggcaa cgtaccgcgc acaacctcct gcgttccaag 2400 aagaccggat aatcttccat cctgaaacgg aacgctcaac ccgacctcgg gaaccggtgt 2460 ttctgcccgg gaacggctac gatgacgatg tggaacgtca gtctaaaagt ggtagtgatg 2520 gaccgccgtc tcctaagcgt cctaggatcg atgaagactg tttactcaca gaggcagtgt 2580 tggcatacgc ggccagcatc ggaggcgtcc cggatacgcc gaacacgtac gcagaagcta 2640 tcgccagtga tttaccagct gaatagcgtc gggttatgaa ggctgagtta cactctcatt 2700 cccagaacgg aacgtggacg ttggttccgt gtggaacggc tacgcgttcc attggatgtc 2760 gctgggtgtt caccaagaag cgtgacgaga ccggtcgtgt tatccgtttc aaagcacgcc 2820 tagtagctca agggttcaag cagaagtttg gaatcgattt tttcaaacgt attctcctgt 2880 tgcaaacatg acctcgattc gagctgtact cgctgtgtgt gtggcatgcg actacattat 2940 ggagcaactg gatgctgaca cagcgttcct aaacagcggt ttggtggatt tggtctacat 3000 ggacgttcca cttggtctgg agaacgctga aggcatgaag tgcaagctgc taaaggacat 3060 atatggtttg aagcaagctg cggaacaaga ctatccatcg agtgttcctg cggaacgatt 3120 tcaagagttg tggagccgac cagtgtatgt acgtcaagcg ttccagggac gcattcgtgt 3180 acgtgtgcct gtatgtggac gacatgatca ttgcggcgaa gccacgcgga gagattcgcg 3240 aagtaaaggg cgctctgaag agagccttca agatgaaaga gcttggcgag gcaaagttca 3300 tcctggggat ggagattgat catgataagg cagctggaac gctgatgatc aagcataccc 3360 ggtacattga cggcattgta gaacgcttca accaacggaa cgccaagctg ttggataacc 3420 catgcgcgtc caacatgaag ctgtcgaaga tgatgtcgcc agccacggag aaggaacggc 3480 gtgaaatgca gtcaagaccg taccgttcct tgatcggatg catgatgtac atcacaacat 3540 gcactcgacc ggacatcgcg tacgttgtaa cgcagttgtc acgcttcctg gaaaatcctg 3600 gaacgcaaca ctggaaggca gcgatacggg tcctgcagta cttgaagaca actcggcagc 3660 acggtatcgt ctaccaaagt ggaacgcaag atgtcaaggc agaggcgttc acggacgcag 3720 actggggaag caacattgac gacaggcgtt tcgtatcagg tgtcatggtc atgattggga 3780 acgctccggt tgtgtttaag tccaagtacc agagaatggt tgcactcagc tcagcggaag 3840 cagagtacat ggctcggagt atgtgtacgc aagaggtact gtggacacgt gctattctca 3900 aggacatggg tcaccagcaa gtggagcgac ctaggtctgg gagaacaatc aaggtgctat 3960 cgcactcgcg agtaacgctg ggtatcacgc taggaccaag cacgtggata tccgacatca 4020 cttcattcgg gagaatgtgg agcgctctac gatcaaggtg gactacgtcg acacgaagcg 4080 ccaacttgcg gacatgctta cgaaggcgct tggaacgaag tcgctagcgt tccttcgcga 4140 ggcaaacggg atcaagaaga ggaacgccgc tgagtagcga tccttaacga agacgaacgc 4200 cgtgcagtag cggtgagtgg gag 4223 // ID Gypsy-50_PIT-LTR repbase; DNA; PLN; 816 BP. XX AC AATU01003154; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_PIT_; KW Gypsy-50_PIT-I; Gypsy-50_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-816 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003154; Positions 25006 24191. XX SQ Sequence 816 BP; 202 A; 195 C; 254 G; 165 T; 0 other; tgaaatcctc ttgggggctc atcttatcca gacatggacg gcaggcgagg agcgacggag 60 atcaacggac aggaggacaa gacagtgaag tggataagtc aacatccacc ttcgagcagc 120 tgccacctta aaggagcaac cggttgaaga tccagacgac ccggtatact caaggcaagt 180 gtgcggcgaa tggcgatctt cgtgaggagt cgctgttgct tgaatgaggg agcgggagac 240 caagtgcatg tggtagtaga gggatagcct cagttcgaga ttagcagaga agcaggcaag 300 tgcttccaga gagagccacg agcgtatcgg tctgatacgt ttcgcgcaga agacaagtac 360 aacaaccagt tagccagtta gccagtgtca tcgcagtgtt agtccttgag tgtgagggtt 420 tcccaagagt gtgttagaga gacgggtatt gtagccccgt aggatcgtcg gtatcagcag 480 cccgcaacgt cgtgacgtgt ccccaaagag agggtagtgg agttagcccc cggtactaag 540 agcccccggg atcacgcgcg agcgatctgg caatagatct cgacggattc ccttacgtgc 600 acgcggccta ggaactcagt taccgtttgc tgtgcgtgtg ctaggatagc tgtaggtgta 660 ttttagggca gcggtttctg tggccaccgg acaccgtctt ctgatcaggg acaggactgg 720 cagctacgtg acgtggacga ccacctcaac tgacagacca cggtgatcat tgactcaact 780 ggttaaggcg cgcagtgagc tacgacccga agtcca 816 // ID Helitron3_PPa repbase; DNA; PLN; 5696 BP. XX AC . XX DT 03-NOV-2009 (Rel. 15.07, Created) DT 03-NOV-2009 (Rel. 15.07, Last updated, Version 2) XX DE Helitron-like element - consensus. XX KW Helitron; DNA transposon; Transposable Element; Helitron3_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5696 RA Bao W. and Jurka J.; RT "Helitron elements from moss."; RL Repbase Reports 10(7), 962-962 (2010). XX DR [1] (Consensus) XX CC This is a partial reconstruction of a relatively old family (~81% CC identity to consensus). XX SQ Sequence 5696 BP; 2099 A; 710 C; 993 G; 1890 T; 4 other; tacattgttt gatcaaatca gttcttggtg ataattcttt gtcagagtaa aaagcaatct 60 ttttgtttta gtgatatata gagcattgag agttggaaga tgcataggaa tcaaaaacta 120 gaagtaagta gatgagtgca tatatagcat gtagttggga tatataggat ataagtaaat 180 aaatgagtgc atatgtagtg catcattata tataggatat aggccattta ttttggtgct 240 aagagttcac cattattttg gaaccaatat tgattaatta gaccttttat aataaaatta 300 tatgstattc aattawaaaa cctatgcaat gtaatgaaaa aatattacat gatcatatct 360 atcctaagca agtatatgta acwtctgaga tattattcat aaatcaatgt attttttcat 420 aaatagtatt gagatatatc ccttacattc tttctcattt acaatcaaag ggcctaaaaa 480 tgttgttctt ttataatgat ggtttatttt gttggtgtga tttagattga aaaaatcata 540 agaaggtttt attagcaaat atgaatgcaa atgcaaacaa gagtgattta gaagtagaat 600 ttatatattt gttattgtat gactttcaaa aaattataac aataatacaa gtattattat 660 ttattattat tattattata aaataattta ttaccaaaaa atattattat tatcaaaaaa 720 attattatta attataaaat attatattaa aagtattatt attaaaagat attatcaaaa 780 ggtgaatttt ttgctctctt gatagccaac atgtcaattg tcaattgtta agctattgca 840 caacaaagac aaagagcaca tgaacatgtt gagcgatatg tgcaagcaca tgaagaacaa 900 ggaagaagaa gattagatgt cctagatgga cawagaaatg acttaaataa tgttgcacct 960 atatgcaatt gttgtgcaat tggacaatta agacaaaagg cacatgaatg tgttgaagaa 1020 catagagaga gaatgaaaag aggtagaagg acatgctact atgattaata gaaatgatgg 1080 tggtggtaga gagattgctc aacctatgaa tctttgaaaa aatgcacaac aaagacaaaa 1140 gacatgggag gaagcaatct tatatgcaca ataagaagaa gaagcaagaa aatatgatag 1200 aataagaaaa attggtgaat aagtggagca actttttcat gaacatcata atgaaagaaa 1260 aagattggaa ggttgtcata atgttggaaa tatggacgtt caatgcccac attgcaaggc 1320 actctattag atggatgagc aaaccatgcc atcaacaaaa ttaaatctac aatttggtac 1380 atgttgtctt catagaaagg ttgaactttt gcttcttgaa gatcccttat tgttaattag 1440 ataactactt gatggacaag atgaacaaag caaggagttt caaaagacta tttgacaata 1500 taatgttgca catgcattta catctcttgg tgcaaaagtt aataatacta tcttgcaagg 1560 atatggtcta tatagctttt gcatatttag agagctttgg catcaaatgg atattctttt 1620 atcaaaacaa ggtatagaag caagttatat gcaactttac atttatgatc ttgatattgc 1680 acatgaagca aggatggcac ataatgacaa tttgttaatt caaacaatat aagagcttca 1740 agaatgtttg aaagaacatc acatattttt tttctacttt gttgacaagc tcatgaaata 1800 ttgtctaaag caagaaaaag aagagagagc ggtgatgata tatacataca tctttatttt 1860 agtaaagata tcaacaaaag atattataat cttccaactt ctaatgaggt tgtagttgtt 1920 atgccaggca atggaacaaa ggcagaagga atgagagata tagttgttta atagagaaga 1980 ggtgcattgc aacaaattca tgaaggacat cttgcatact tgccactcta ctatgttttt 2040 ttttttttcc atgcaaagaa cttggatggc atgaccaaat gagacataga gatatgaatg 2100 ccaataaaga tggaggtaaa aatatgtaga ttgcatatat tattcaaata gaattttatt 2160 catattaatt gtttttacaa tataataaat actcgactat cttacaaggt agaaagttgc 2220 tacaagaatt tattgtggat gcttggcaac aaagaaaatt agttgagata ctttaatatg 2280 aatcaagata ggttatgtgc agatgtatat caaggactag cagatatttt tgaagatgtg 2340 caaaaccaag aagttgacat gcaaaatcta agatagagga taattctttc attgtctcat 2400 attagaagta caagaaacct atttgagatt tttcaagatt ctatggccat tacttaatac 2460 tttcaacatc caaatatatt tggtacaatg attgcaaatc tgtagtggcc aaagatctca 2520 agtgcactcc ttctaggata aaggcccaaa gattgtctcg acttggtagc aagagtattt 2580 gaactcaagc attgtgcatt aattgaagat atttataagc atcacatttt aggacatgca 2640 cttgcaagag tgcatactat tgagtttcaa aagcaaggtc ttttgcacat gcacttctta 2700 ctcttttttg aacaaaataa taaagtaaaa gatttagcca atattgatag gattatttgt 2760 gcagagtttt ctattaaaaa agaagatcca ttgttatttg agacaattag cacttgcatg 2820 gtttatggtc catgtggacc tcaaaatatg caagctctat gcatgaagga tggaatatgc 2880 caaaagaaat atccaaaaga atatcaagaa gtaacatcaa tggatggtga tggctatctc 2940 caatatcata gaaagaatga tggaagaact ttcaatattg gcaatcatat tgtagacaat 3000 tgagatgttg ttccatacaa tcctactctt agcaaaaagt ataattgcca tatcaacatt 3060 gaggtttgtg cttcaatttg tgttgtgaaa tatattcaca agtatatcta taaaggacat 3120 gattgtacaa caatacaaat tagaaatgaa gaagatgagg tcaagcaata tattgatgca 3180 taatatatta gagctccaaa ggcagcatgg catttgtttg gaatgaaaat gcatgaagaa 3240 gtttcaaatg tggtttgatt ggcattgcat ctttttagaa tgcatcaagt aatttttgat 3300 ccaaatgatg atgcaattga agtcttagcc tatagaaagt ggcaaaaaac aactttgata 3360 atattttttg aaatgtgtga atctatagag attgcttggc aatacaagta tcaagagttt 3420 tataacattt tgtatggaat aagacctcaa agaagtagac aataagacaa tatggatttg 3480 caattagaag gttatatttt gttgatccta ttataaaaga aagattctat ctttggcttc 3540 ttctaatggt ggtatataga ccacgttcat ttgaagattt atatattata aatagagtgc 3600 tcaaccaaat tttaagagtg catgcttaga aatgggatta ttggaggatg acaaagagta 3660 gaatcaatgc ttagaagaag cctctataat gaaaataaag aagcaattaa gaacattgtt 3720 tgctattatt cttcttcaat gtttacttgt acatctaaaa gagctatggg aaatttaaag 3780 aattgattca aaattatgga attgaaaggc caataaaaaa gatattagat tatggactat 3840 ttcttcttga tgaaattctt caagaatcaa gcaaaatact tgttgatttt ctattgatgc 3900 cattgtggaa aagaaattga atgaaaatgc tacaaatcaa atgtttatgg agcatatggc 3960 atggaattgt gacaagctaa aacaaatagt agaagaatgt gtgccaaagt tgaatgatga 4020 acaatacacc atatatttgg atatctttgc tttaatagat aacaatctta aaaagtgtat 4080 tttttggaag gaccaacaag aagtggaaaa atatttgtct acaatacaat agcaatgaag 4140 tttcaaagtg atggaaaaat tattttgtgt gttgcttctt ctggaattgc agcacaattt 4200 ttaagtggta gatggactac acactctatg tttaaaattc tgctcatctt atgaagattt 4260 gttttgcaat attgcaaaga atgcaccata tataaatgtg ctaaaaaaga taattcttat 4320 tatttgaaat gagataccaa tgcaacattg ccattgtatt gaggcagtca atagaactct 4380 ctaagacata aatgacacta ataagttatt tggcagaatt actatagtct ttggtagaga 4440 tttttggcaa attcttcttg ttgttgttaa aggctcaaga aaagagattg ttgatgcttc 4500 tttgcaacaa tcaaagattt ggtctaatat taaagtgtgc aagttgacca aaaatatgca 4560 tctagaaggt gtatttgatg aaaatcaatt atttgctgaa gagctcttaa aggtatgcat 4620 tatataagat tattactttt gagagttttt ttatgataca atatttttgt ttaatatatc 4680 taagaatggt ttctatttgt agattaaaaa tggatcaaca attatagatc cattgaaaag 4740 tacggtgatt cttctaaaac atatgaaagt aggtccaaca tcaaatgatt tgattcaagc 4800 tgtctattta agattggatg aagatgggac acttggagat gaatatttca ctaacaagtc 4860 tattttatct gcacaaaatt atgatgttga tgatctaaac aagcatgcaa tggagagatt 4920 ttttagagtt tcacatattt attttaatgc aaatatagca attatagaag atggtgccaa 4980 taatggtaat tattatccaa ccaagtattt gaatagctta agtccatctg gattgccacc 5040 atttagctta gagctaaagg ttggatgtcc tattatgttg ttgcaaaaca ttgctctgca 5100 tcaaggactt tgcaatggat catgcctaat cattacacaa ctcattgatt gagttataga 5160 agcaagactt ttatctagag actacaaggg acaattggct tttcttccaa ggatcacatt 5220 atgtccatca tttgcagaga ttccgttcaa gttgcagcaa aggcaatttc caataaaggt 5280 aggatttgca atgactatta ataaatctca aggacaattg ttgaagaata taggaataga 5340 tcttagaatc ctagtatttg cacatggata gttgtatgtt gccctttcac aatgcacttc 5400 tccaaatatg atcaagatcc tatatcttaa aaataataaa gacaaaaata ccactataaa 5460 tgtaatttat ccaaaagttc ttttaactta gctattttat ttttgtaata aataaaaatt 5520 atatttccaa ttacaatgaa gaaatataaa tggttctatt attatgcata tatttttttt 5580 cttttttttt ttttttcttg gtcaatattt ctttaggagt ggtcaatttt tgacttagca 5640 accacaaatt aaacttttac accttttttg tggccaatgg catgggtttc cactag 5696 // ID Gypsy-22_PSo-I repbase; DNA; PLN; 5251 BP. XX AC AAQY01000762; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PSo_; KW Gypsy-22_PSo-LTR; Gypsy-22_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5251 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000762; Positions 3517 8767. XX CC Positions [4196-4540] - Integrase core CC 'GGTAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1491..3506 FT /product="Gypsy-22_PSo-I_1p" FT /translation="MYFQTGEGERSLTPERYLIKTVRCEKNARSAPARTFF FT DEGADFCGISERFVESQGWMSDVVDHGAMEVTYANGKTESVRQRTIQLTVF FT VEELPAIKYEFYLCHIPNKCELMLGVPWKRLARPIIDWETDRILSKEAFVQ FT EVKEDAHKAEQQAKPLPNLPPLLPERRFYYIKRFGFTKHITLKQADKIIRK FT RDVEFVAILPEETINALYIEVLKEDGKESGALRFAQASKQLEKQVRQVKTD FT KESFRGTPGYPLVCEFDDIFKNELPPGLPVHGEHEMEVLPGTGAVYQPQWR FT LSPDQERALREWVKEMLRAGLIRPSISPHGAPTFCIKKPVGWRVVHDYRAM FT NARTVRQSTPMPRKDAIFDRMSGAFWYRCFDLLSGYYQMRMRAKDIPYTAF FT QTPDGLFEYIAVPMGLSNAPATFNRIVQRIFEDMRECVATYFDDIYVFTKS FT KDIDSHLAAVRRVFERCRKKKLYLKLSKSMICAQEIPCLGDFVGRDRVRID FT PDKVRVVREWPLPKTIRNLQSFLGTTVYVQRFCHRYSEISAPLFEMVKKKD FT KKELEWTPDRVEAFEALKDALSKTPVLALPDFSKPFLLRTGASRFAVGGVL FT LQHVQASDGTGEVEKPVAFCGRKMNSAELNYPTHEQEMLAIVHCLNIWHVY FT LLDGGCGGNGSSLPRARPDAENY" XX SQ Sequence 5251 BP; 1425 A; 1306 C; 1470 G; 1050 T; 0 other; tagtagacct tgaagtggaa ggcgctagca tgagcgatgt cggcaacgag atcgacgcgg 60 cagaagccaa ccaaccggcc aacgtgggcg agaacggcgg agcagaggac aaccgaccac 120 tcgacgcggg cgagattggc aggctacgac ttgtactgga caacctggaa gcgctggagc 180 aaacactgca cacgctgatt cgggaccaga ccagtctcac ggaggccgtg gctgcgttcg 240 caacacgcat ggaacgacgg cagaaccaga acatggagca gatcaaggca aaccaagccc 300 tgcttcacga ggtgatcaac cagattcaga cctttgcagt tcggagtgac taagaaacgg 360 cgagtcagcg agctgacctt acttcactgc ggggtgaaat ggagtcgcta caacaaaccg 420 ttcgaatcca agggctcccg gtgctagcca gtcgactaat aatccaggca tggccgtgcc 480 ggatgacgaa ctgtatgctg attgggatgt tgtgggccaa cgttcacccc acaccccaaa 540 tttcaccaac gcggagctgg aaagtcgaat ttcagcgtgc atgaagcaaa aggaaactcc 600 tatgtacgga gggaccaacg acgacgatat cgacgtttac gtgctaaaca tgatctcgtg 660 gtatgccgcc tacggcctct acctcgctca ggcacaagta gactggcgcg ttggcgagct 720 gatgctgaac catacaaaag gcaaggcaaa gaagtggcta ctccaggact acaaaggtca 780 acgacgctgg agccatatcg tgaagaagat gaagcaacgt ttcgtgactc gatccgtgaa 840 gaagatctgg ttgcgagttt cttcgactgt agccaaggaa accgctcgtt agaggcatac 900 atcgacgaat ttcagcgact tggccgcact gatgatgtat cggaaaagta caagatgatc 960 aagttcaaga aagggctgcg gtcgagccaa ctaaaagaac tgctaaagac gcagacgtac 1020 gagtcactag aagagctcgt ggacgcggct cggtccttta atcctcggga gtcgacgacc 1080 gagtcacaga aggcagggag agacaacggg ccaagcagta acaagaagaa acctgcatcg 1140 gcaaaaccca tgcccattga aaccgggaaa tgcagctcga cacgttgcct cgagaagggg 1200 catacaaaag acaagtgttg ggtgctgcat cccgaactcc gtccggcttg gttcaaagaa 1260 agtggtgggc gacgagcagg agctgccgcc gccacggcat cgtcccgaaa ttcagcccct 1320 cagaacgaca acagcaacat gtgggcggtg ctgaacgcga tccagactga tctggccaag 1380 atcaagtcgg atttaaacta aggggtcttg agggtggcgg cttaagaccg aacaaagcca 1440 acagtggtga ccagtatcgt gtgtttgatc cggggacgag agcgaacagc atgtatttcc 1500 agacaggtga aggcgaaaga agcctgacac ctgagcgcta cttgatcaaa acagtgcgct 1560 gcgagaaaaa tgcacgatcg gcacctgcga gaacattttt tgatgaagga gcagattttt 1620 gcggaatttc ggagcgtttt gtggagagcc aaggctggat gagcgatgtg gtggatcatg 1680 gagcaatgga ggtgacgtat gccaacggga agaccgagtc tgtgcgtcag agaaccatcc 1740 aactgaccgt cttcgtcgaa gagcttccag ctattaagta cgagttctac ctatgtcata 1800 tcccgaacaa gtgtgagctc atgttaggtg tgccgtggaa acgactggcg cggccaataa 1860 tcgactggga aactgatcgg atcctctcca aggaagcttt cgtgcaagag gtcaaggagg 1920 acgctcataa agctgagcaa caggccaaac cgctgccaaa tctgcccccg ttgctgcctg 1980 aaagacgctt ttactacatc aagcgtttcg ggttcacgaa gcacatcact ctaaagcagg 2040 cggacaagat catccgaaaa cgcgacgtgg agttcgtggc aatacttcct gaggagacca 2100 taaacgcgct ctatatcgag gtgttgaaag aggacggaaa ggagtcgggg gcgttgcgct 2160 tcgcacaagc aagtaagcag ctcgaaaaac aggtgcgcca agtcaagaca gacaaagaaa 2220 gctttcgagg tacacctggt tacccgctcg tgtgtgaatt tgatgacatt ttcaagaacg 2280 agctcccacc aggcctaccc gtgcacggtg agcacgagat ggaggttctg cctggaacgg 2340 gggctgtgta ccagccgcag tggcgactta gcccagatca ggaacgcgca cttcgtgagt 2400 gggtgaagga aatgcttcga gcaggattaa tccgcccgag catatctccg cacggtgcac 2460 caactttttg tatcaagaag ccggtagggt ggcgagtggt acacgattac cgagcgatga 2520 acgcaaggac agtccggcaa tcaacaccaa tgccgagaaa ggacgccatt ttcgaccgga 2580 tgagcggcgc gttctggtac agatgcttcg acttgctttc aggctactat cagatgcgta 2640 tgagagcaaa agatataccc tacactgcgt tccagactcc cgatggccta tttgagtaca 2700 tcgcagtccc gatgggcctg agtaatgccc cagcaacatt caaccgtatc gtgcaaagga 2760 tattcgagga catgcgtgag tgcgtggcga cgtacttcga cgacatttac gtcttcacca 2820 agagcaagga cattgactct catcttgccg ctgtgcggcg cgtgttcgag cggtgtcgca 2880 agaaaaaact gtacctgaag ctgtcaaagt caatgatttg cgctcaggaa attccttgcc 2940 tcggtgattt tgttggccgc gacagagttc gaatcgaccc agataaagtt cgtgtcgttc 3000 gtgagtggcc tctccctaaa accattcgga acttgcagtc attcctggga actaccgtct 3060 acgtgcagag attctgccat cgctactcgg aaatcagcgc tcctcttttc gaaatggtca 3120 aaaagaagga caagaaggag ttggagtgga caccagatcg tgttgaagcc tttgaggcgt 3180 tgaaagacgc actcagcaag acaccagtgt tggcattacc tgacttttca aaacctttcc 3240 tgctccgcac tggtgcttct cgatttgcgg tcggtggggt tctgctgcag catgtacagg 3300 cgagcgacgg aacaggagaa gtggagaaac cagtagcgtt ctgtggccga aagatgaatt 3360 cagcggagct gaactatcct acacacgagc aggagatgct ggcaatcgtt cactgtttga 3420 acatttggca cgtttatctt ctcgatggag ggtgcggtgg aaacggatca tcactccctc 3480 gagcgcgtcc tgacgcagaa aactattaac cggcgcattt gtaggtggta cgaccagctt 3540 gcagagtttc acctgcgttt tcgacacatt cctggagtaa ccgacgttgt tgctgatgca 3600 ttgagccggc gacaggactt tgaaattgat ttcttggatt gcaagaacaa gcaaatatgt 3660 gcagtccgtc gtctgaaacc agctactcta aaggaactaa tacggagagc tcagcggcgt 3720 gcagggatca ccagagattg gggcgttcag aaggaggtcg aggcgccagg cgcatttgtg 3780 ttcgatgaaa agaaccaaat tgcgctgtat cgcacgcagg ggcgactaaa gatcttcatc 3840 ccagccgagg acatcgagat ccagaacacg gtcctctggg aactacacga cattgctaca 3900 gcaggccacc caggcgttga aaagacaagt caagctgttg ccgaacgctt ctactggaga 3960 aaatggcaga aacgcgtaaa agagtacgtg gcgacgtgtg aatcctgtca acggaacaag 4020 tcgcggcccg gaaaacctcc agggttactg cacccactag aagtcccaac ggctcgatgg 4080 tccttgattg gcatcgactt catgacgggt ctaccaaaga caagcaccga gttcgactca 4140 atcatggtcg ttgcagatcg actgacaaaa agggcccatt tcgtaccaac tgtgagtgac 4200 atatctgcgg agtcgctcgg aaaacttttt atcgatcact acgtgcgtct acatggactg 4260 ccagcagacg tcggatcgag actccaaagt tacgtctaag ttctggggag agtgcgcaaa 4320 attgctgggg accaagctga atctggcaac ggctcaccac cagcgcacgg atgggcaagt 4380 tgaacggaca aatgctatct tgtcaaccta cctccggcac tatgtaagcg gctatcagaa 4440 cgactggaat gtccacttgg cgctggcaga atttgcctac aatcgccagt accaggcgac 4500 gatcggcatg tctccattct acgcggatat tgggtacaat ccgcgcgttc cagcagatac 4560 tcaacttgcg gacctcgaaa aaacaccggc agtggcgttt gtacaacagc aggacaagat 4620 tctccgagag ttacaggcca aggttcgcat gggagctgaa aaatgaagct tctgtatgat 4680 cgagggcgac gagaccagaa attcgacgtg ggcgacatgg ttttgatctc caccaagaac 4740 ttcaacccag tgacggtcgg ggcggtcagg agaatattcg cagccaagtg ggttgggccc 4800 tacgaagtta tcgcagtgtt gcacgacggc gcgtcctatg agctaaatct gccaaaggag 4860 ttgggcattc acccggtttt ccacaccatg gtgctgaaaa aattccggaa agacactacc 4920 ggcgctcagc gtgacagcac catccccacg gttcgactca aggacggcac agaaggtcat 4980 ctgatcgaga cgattctgga ccatcgcatc acaaaagagg gcaaggaaac gtacaagtgc 5040 aagtgggtgg gtcgcagtga cgatattacc tgggagccga cctcaaattt gctgtcagta 5100 ccagggctca ttcgcgaata ccatcgacga gccaacaatt tgccgacaag atcatcagag 5160 cgacttcgtt caagaaccaa gcacgggtcg aatggagtgc gactagtcca acaatatttc 5220 gggcggggaa agtctacttc aacggaggtc g 5251 // ID Copia-4_PR-I repbase; DNA; PLN; 4007 BP. XX AC AAQX01000579; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PR_; KW Copia-4_PR-LTR; Copia-4_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4007 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000579; Positions 1114 5120. XX CC Positions [1409-1936] - Integrase core CC 'GCAAG' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..4006 FT /product="Copia-4_PR-I_1p" FT /translation="MSNPNTFVTKIRKFDGSGYRLWARHLQLYLEVKEVWM FT ALQFPTPTADKLKGEELATEKPLHKMVVQHKLAMTIILTALTDDIAAEVAD FT LGHPMLMLNALKNTYRHVCDTTVGALKRDYLSRYLDGGGGMLVHIHDTRLM FT LADLACYKVNLSDEEKRSNFLQTLGPDWNGYVSTLESSHSLEEMLLKAAAE FT ARRRNVQSQRGQGGNAAAVRTGSAFTTTGRGNGKRKGKCFHCGKQGHYKYE FT CRELMKNAGTNNKSTGRWNSDDQSSSSDTEESGFAFQVETLENADGDLWII FT DSGASSHMTGMASALTNLTKLTREVTVTTAGGMRLKATQSGKARLVPDDGI FT AFTLNDVLYVPGLQRNLISLNKAGEAGLRTVFHGDTCVLSKGTSRLVASRN FT SSGLYVVTVTRTRKTTAYQATDAVDSIRLWHERLGHLKLRDLIKVLNDNSV FT PWTGSRKLKCHACAAGKLSRQPLKSKQPRILKRGQAVMSIDYVGPMQTTSH FT DGFTGMVSIIVEPFHLAAVFPVKDKSSATQLHAIRSCMGMLKAAKPGTQIC FT VLKSDNAAEYTAGDVAEFCNEQMIAQEFSSPYTPEQNGKVERSNRVVVEMA FT RSLLQGAGMSNRFWSDAVLTAAYLRNRCPTKVLQGKTPIEALTGSLPGLRK FT LRVFGCEAQVLVPSATRRKLDAKTETGVLLGYGPGGQFRFWIPSGVGSGGR FT VVVSRDAVFYEENLRNTVDFDLSEPDLREPAHVPKPVGAVQPMEDAEPVGA FT VVPATRSQTDVDMASPRPPAMPSSPDTWGEPRQEKQIVRRSKRVSKKSVRR FT LEFEQLHTAEEAVAFAINQDPDTLEEAMSRPDANEWRRAIEKELQSLKDNN FT TYEEVTPPADVKPVETKWVFRRKTHADGSLDKYKARLVAKGFTQRFRVDYT FT ETFSPVVQHDSIRVVLAVAVQRKWRRRQLDVETAFLNSPLREVIYIVPPTP FT EGRLWKTLWKLLKALYGLKQSSRAWYETVTQFLREINFRACESDPCVLIKL FT CGATIVVVLLYVDDLLILSNTDDALDEFEEQITQHFSMHTRDIADAFVGIE FT LSESRNGEALILSQGQYNRSVVKSFAGDERQLPRTPMEEAFQTRVRLDTDV FT LNESFRAVVGSLLYSSTVTRPDLALSVRVIAQETERPTATIRDGVDRVMGY FT VARTADIGLLYRRSGRGDLHLEVYCDAAFACEEGRKSSTGYVIMLNKCCIA FT WGAKKQPIVTLSTTESEYVALTAGVRECIGLKLFLEELGLPLAGRIIVHED FT NQGAQHLAEGKAVTQRSKHIDLRYHWLREQVRCGVIELHYCPTREMIADIM FT TKPLPGPAFATFVDMLGLRRVG" XX SQ Sequence 4007 BP; 1014 A; 953 C; 1167 G; 873 T; 0 other; ggttatgagt aacccaaaca ccttcgtgac gaagatccgc aagttcgacg gatccggcta 60 tcgactgtgg gcacgccacc tacagctcta ccttgaggtc aaggaagtgt ggatggcttt 120 gcagttcccc acgccgacag ccgataaact gaagggagaa gaattggcaa cggagaagcc 180 gctccacaaa atggtggtgc agcacaagct ggccatgaca atcatcctga ctgctctgac 240 tgacgatatt gcagccgagg tcgctgacct ggggcacccg atgctcatgc tcaacgcatt 300 gaagaacacc tatcgtcatg tatgcgatac gacggtggga gctctcaagc gcgactacct 360 ttcccgctac cttgatggtg ggggcggcat gctggtgcac atccacgaca cgcgtctgat 420 gttggctgac ctcgcctgct acaaagtgaa cctgagtgac gaggagaaac gcagcaattt 480 tctgcagacg ctagggccag attggaacgg ctacgtctct acgctagaat ctagccactc 540 gttggaagag atgcttctca aggcggcagc agaagcaaga cgtcgcaacg tgcaatctca 600 acgcggccaa ggtggtaatg ctgccgctgt ccgcactggg agcgcgttca ccactactgg 660 aaggggaaac ggcaagcgaa agggcaagtg ctttcattgt ggaaagcaag gccactacaa 720 gtacgagtgt cgcgagctga tgaagaacgc gggcacaaac aacaagagca ctggtcgctg 780 gaacagcgac gatcagtcta gtagcagcga cactgaggaa agcgggttcg cgtttcaggt 840 cgagactttg gagaatgctg atggggatct gtggatcatt gactcgggtg catcgagcca 900 catgaccgga atggcgagcg cactcacgaa tttgacgaag ctgactcgcg aagttacagt 960 gactacagca ggtggcatgc gtctcaaggc gactcaaagt gggaaggcac ggcttgtgcc 1020 agatgacggc atcgcattta cattgaacga cgttctttac gtgcccgggt tgcagcgcaa 1080 cctcatcagc ttgaataaag ctggtgaagc tggtttgcgt acagtattcc acggggacac 1140 ttgtgtattg agcaagggca cctcgcgtct tgtggcctca cgtaattcaa gtgggctgta 1200 cgtggtgaca gtgacgagaa cgagaaaaac tacggcctat caagccacag atgcagtcga 1260 cagtattcga ttatggcacg agcggctggg tcatttgaaa ttacgtgacc tgatcaaagt 1320 attaaatgac aactcagttc cttggactgg atcgagaaag ctgaagtgtc atgcttgcgc 1380 agcgggaaag ctgtctcggc agccgctcaa gtccaagcag ccacgtattt tgaaacgagg 1440 tcaagctgta atgtccattg attatgttgg gccaatgcaa acgacatctc acgatggctt 1500 cacgggtatg gttagcatta tagtggagcc ctttcacctg gcagctgtct tcccagtgaa 1560 agataagagc tcagcgaccc agttgcatgc gatccggagc tgcatgggaa tgctgaaagc 1620 ggctaaacca ggaactcaaa tttgtgtgct taagagcgac aatgctgctg agtacaccgc 1680 tggtgacgtc gctgagttct gcaacgaaca aatgattgca caggaattca gctcgcctta 1740 cacgccagag caaaatggga aggtcgaacg cagcaatcgg gttgtagtgg aaatggcgag 1800 aagccttttg cagggcgctg ggatgtcaaa tcgtttctgg agcgacgcag tgttgaccgc 1860 tgcctacttg cgaaacaggt gcccaaccaa ggtgctacaa ggaaagactc cgattgaagc 1920 actcactgga tcattgcctg gtcttaggaa gctgcgcgtc ttcgggtgtg aggcgcaggt 1980 tctggtacca agtgccacgc gtaggaaact ggacgcaaaa acagaaactg gcgtcttgct 2040 tgggtatgga cctgggggtc aatttaggtt ttggatcccg tcaggtgttg ggtctggtgg 2100 tcgagttgtc gtctcacgcg acgcggtctt ctacgaagaa aacttgagaa acacggtgga 2160 ttttgacctt tcagaaccag atttgaggga gccagcgcac gtgccaaaac cagtgggagc 2220 tgtacagcca atggaagatg cagaaccagt gggagctgtg gtccctgcaa ctcgcagcca 2280 aactgatgtg gacatggcaa gcccacgacc tccagcgatg ccaagctcgc cagacacttg 2340 gggcgaacct cgtcaggaaa agcaaatcgt tcgtcgaagc aagcgggtgt ccaagaagag 2400 tgtgcgacgt ttggagttcg agcaattaca tactgctgaa gaagctgtcg cgttcgctat 2460 caatcaagat cctgatacat tggaggaagc catgtcgcgt cccgatgcta acgagtggcg 2520 tcgagctatc gagaaagagt tgcagagcct caaagacaac aacacttatg aggaggtcac 2580 gccacccgcc gacgtgaaac cagtggagac gaaatgggtt tttcgtcgga aaacgcatgc 2640 ggacggctct ctggacaaat acaaagcccg acttgtcgct aagggcttca cgcagcgatt 2700 tagagtggat tatacagaaa cgtttagtcc tgttgtgcag catgactcca ttcgcgtggt 2760 gttggctgtg gcagtgcagc gcaagtggcg acgccgccaa ttggatgtgg agacggcatt 2820 tctcaacagt ccactgcgag aagtgatcta catcgttccg ccaacacccg aggggcgact 2880 atggaagaca ctgtggaagc tgctgaaagc actatatggt ctaaagcaat catctcgagc 2940 ttggtacgaa actgtgaccc aatttctccg cgaaattaat tttcgtgcat gtgagtcgga 3000 tccatgtgta ctgatcaagc tgtgcggtgc gacgatcgtc gtggtgctgc tgtatgtgga 3060 tgatctattg attttgagca acacagatga tgctttggat gagtttgagg agcaaattac 3120 acagcatttt tctatgcata ctcgtgacat tgctgatgca tttgttggca tcgaattgag 3180 cgagagcagg aatggtgaag cattgatatt gtcccaggga cagtacaatc gctcagtggt 3240 gaagagcttt gctggggatg aacgccaact gcccagaacc cccatggagg aagcattcca 3300 aacacgagtt cgactagata cggatgttct caacgagtca tttcgagccg tagtggggtc 3360 actactctac tcgtcgacag tcacgcgacc ggatttggca ctatcagtac gtgttatcgc 3420 gcaagaaacc gaaagaccaa ctgctacaat tcgtgatgga gtggatcgcg taatgggata 3480 cgttgctcgg acggcggata tcggcctgct gtataggcgc tcgggtcgcg gggaccttca 3540 tttggaggtg tattgtgatg cagcgttcgc ctgcgaagaa ggaaggaagt cttccacggg 3600 ctatgtgatc atgttgaaca agtgctgcat cgcatggggt gcaaagaaac aacccatcgt 3660 gacgttgtca acgacagagt ctgagtacgt ggcgcttacg gcgggtgtca gggaatgtat 3720 tgggctcaag ttatttttgg aggaacttgg tctgccgctc gctggtcgga tcattgttca 3780 cgaagacaat cagggagccc agcatctcgc cgaaggcaag gcagtaaccc aaaggtctaa 3840 gcatatcgac ttacggtacc actggctacg cgagcaggtt cgctgcgggg tcatcgagct 3900 acactactgc ccaacacgag agatgatcgc agacatcatg accaagccac tacccggtcc 3960 ggcctttgct acattcgtcg acatgttggg gctgcgccga gtgggag 4007 // ID Copia-24_PIT-LTR repbase; DNA; PLN; 531 BP. XX AC AATU01012763; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-24_PIT_; KW Copia-24_PIT-I; Copia-24_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-531 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01012763; Positions 579 49. XX SQ Sequence 531 BP; 134 A; 148 C; 127 G; 122 T; 0 other; tgcaggtaat ccaatacgat cccgcgatga ttacggtagg atgtttacgc caccgatgat 60 tagacgagta ggatgattgg acgagtacag agggttggtg attggatgca ccaaatgatt 120 ggatgcaaac taggtagaga agacagtgta agttcttatc aatcaatcac ttctgaattt 180 ccattctgcc cctcaagtga cttccctcgc ctcggcctcc tcgccccaag cttcggcagt 240 cctcccctcg caagacacaa gatccaacca tcaccttctt caggttatca gcccaagtac 300 gatgtcttct gtgcaagatt ccaagatctc catcgacaag ttcaacggcg agaactacgc 360 cacgtggaac cattacatgc gtggcgtgtt cctgaccaag tcggtgtgga atgtgttgaa 420 ccgcgagacg acgcccacgt tcacggactc cagggccaag gacgagtatg tcaagtcgag 480 caacgtcgcc ttcggtctca tgctcctcca catggacgcg gactaccatc a 531 // ID Gypsy-19_PSo-LTR repbase; DNA; PLN; 524 BP. XX AC AAQY01000101; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PSo_; KW Gypsy-19_PSo-I; Gypsy-19_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-524 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000101; Positions 11602 12125. XX SQ Sequence 524 BP; 117 A; 120 C; 179 G; 108 T; 0 other; tgtcccgagt cggaacggct cggaccgttc caactctgcg tgggcgacga tgagtgcctg 60 agttcgtcca cctgctgtgg tcgcgggcga gaagtagtgg gccgtgggtc gggttgtctc 120 gaaggtggag acccgtgggc cgctacccag aggtatcttg gagggatgat gtgcctcgca 180 gtgtcgtggc gggacttcgg ggacggatgg catgttgggc ggctttgagg gccgtcaagg 240 tgaacggatc aagtctttgg gaggggtgag cgggaacgga gtcacccgaa ggcactgaaa 300 cgcaaggatc tggagaggta gagaggaaga gttaggagta gaaggaaggt cagtcgtgaa 360 ttttgcttaa aaggaccaca caggtcgtaa ggaacactta ttgcattttg cttagtgatc 420 tccttgctat ttgtgcccca taaacctata agcacaggca gcacttacta cttcaataca 480 gcggcggccg gccccaaacc ggtccgacaa agcgactcgc gaca 524 // ID Gypsy-2_PIT-I repbase; DNA; PLN; 5113 BP. XX AC AATU01002362; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PIT_; KW Gypsy-2_PIT-LTR; Gypsy-2_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5113 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002362; Positions 72301 67189. XX CC 'CGAGG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1021..3147 FT /product="Gypsy-2_PIT-I_1p" FT /translation="MHWLRECTQASRQEKEELYKKMRDGRGNKKAKLKRLG FT ELLPSAERVVMLNGVLELPYCPDSGSDYTVIEHSHWEQLKALDPSVTTEEL FT EVPILNQTFGSTTVTAKLKAKLHLMLHTAAGPVEPMNMVDVLVVDIDDGEF FT IVGNDLLTSLGIDVDRQLEQLATRCDDETSGDLIDLEADEMPVNLDVSEPS FT GDDDIFVAVEHLIDRALQNGFPVEYVEQLRTTAHAYDIWRLELRDDSPANV FT PPLEVRLKDGARPTKCKPRKYPPHIRKFLREFNARLVDLGLVYENPKSRWA FT SPVLPVKKSADIMDLRQTTDYRARNEQTEVMAAVMPILSLVLENARDMKHF FT GLFDFLKGFWQLPLAELCQEFMSYMTDEKIHTPRRVPQGCADAAIHFQKTM FT EECFASLLYEHLLIWIDDLLLFADDIEVYLKKLAELFSLMNQFGLKLSVKK FT SSLYQTEVKWCGRVINHQGVRHDPARIDTLRSLPYPTTAGELQQFVCAINW FT MRESLVDFSRKVAPLQRRLDEALASTRRTRRAAAGIEIKLNEEERQAFDQV FT KELLATSTTMNFPDDNATTCLFTDASDIGWAAIVTQVKEYDPKRPVTEQQH FT RLIQCMSGTFTGSQLNWTVIEKEALPIVLACEKMDYLLLRPQPFRMFCDHR FT NLIHVFAPYESVKKHVKGKLLRWAMKLMNFRYIIEHVPGPDNVWADMISRW FT AGITLQWLQ" FT CDS 3096..5054 FT /product="Gypsy-2_PIT-I_2p" FT /translation="MGRHDLAMGRNHTPVATMKRIKAVRQQTAPTKVRLRP FT LDDEDFVWPTLEELCTVQAQYERPAGSSTAEDGTITLGGRIWVPSEASELI FT QRLCIVAHCGAQGHRGQKAMITHLKRLFVIDNVAVIVKKFVKDCLLCLHCR FT GGKIIPRPWGEVIDCSTRNQVLHFDFLSMGPSYGDSKYILVLKDHATHYCE FT LVVADTADSRVTVEALLAWHSRFGIPPEWMSDQGTHFKNEVVAELSRRLRT FT QQTFTPAYCPWINGSVERVNRDILQVVRAMIITYKISQKDWVYLVPMVQAN FT LNHTAVPSLGNHSPLELFTGLQNPTPLREFYLSDGNNLQTIPESEEIDGYL FT AELRGSIQAMHSAVEDQRLKQRLLNKKRERGENMVNFSVGDFVLRSRVDEK FT HGNKLQVTWVGPYRVIRAEAHSFRVQHLVTGDEMDVHASRMKMYADESLEV FT TDELLEHVSSQGIVLSVDKLKGHQWNNEIKDFEIQVGWKGLQPIEDSYEPM FT SDLAKEIRVLVESYVKQSDDQELRKAWDKIHPSGDQRQVGSSDASVDQQQA FT NSTAPSSGGVRGKRPERRRHTGRKRRRSTQEQSIQQNETILGEGSAPRGVQ FT SSLGQAATGLDREHGLDQPVGRQTRSRTASAGVTATPRKISSRSIRRRRDR FT GQRS" XX SQ Sequence 5113 BP; 1378 A; 1180 C; 1403 G; 1152 T; 0 other; aagaattctt tagtaagaat taccactgtt tggcagctgt caacaaatcc gacctgccta 60 cagtggaacc gaagccatat ctacttagac gaggatcctg atatctcgat tgaagaccgt 120 cgttggaccc tcgaagaccc agctgtgacc agaatggtgc gcgctgctgg agtggatgga 180 cccactggta ccgtcccgct gtttacgcca attttgccac ccatgatcga gtcagtctcg 240 cacgacgccc ttgttcgatg gaagcggaaa agacgcgact atgaatccaa gatgcaagcc 300 cgctgtcgag tgactggtga agacaacgag gcagtggtgc agagtatcaa ggattctttt 360 caacctcaac tacttgatgt attctgcgat ctacagctca atgtgcagcc ggtcgacgct 420 acggaaggca tgctactcgc agagatcgag cacatagtga gcagcatcaa gaacgacacg 480 ctccccgaca tcaaggagtt gtttaagcgg aagctggtca ttaacctacg tgaaagcgat 540 gtaagtgctc ggttgatgga ctactacaag actttcaact ctatcgtgga tgagaacggt 600 ctcacggaat gcttcagcgg gcccaatggc acgaaagaga agtgcaagca gctgatcgca 660 aacctgcttc cccaatcatt aaagcaggaa gttaagcagt gcgtccgttt cacccatgcg 720 gaggctgcga aggacccgaa gattttgttc cgactcatcc tggagaaggc gaatgagttg 780 gagcgtcaac acgtgcgtct gaagcgagag aagcaagacg taactagaca aaccaaagac 840 aaaccgaagt tcaatcagac agacaagaag tagcgttggg accccaagcc gtctgtcaca 900 gcgaaagcca aaggtgaagc agaccccgag tctaagccta agtttttgtt ttccaagacc 960 aagcctacga cttctggatc gacgaaacct ccgccaggac catgtccgaa gtgccaggaa 1020 atgcactggt tgcgcgagtg cactcaagcc tctcggcagg agaaagaaga gctgtacaag 1080 aagatgcgtg atggtcgtgg gaacaagaag gcgaagctga agcgacttgg cgaattactt 1140 ccgtctgctg aacgtgtggt gatgttaaat ggcgtgctag agctgccata ttgccctgat 1200 agtgggtcgg actacacagt tattgaacac tcacactggg agcaattgaa ggctctggac 1260 ccaagtgtaa cgactgagga actcgaggtt ccaatcctaa accagacatt tggatcgacg 1320 actgtgacgg ccaaattgaa ggccaagttg catctgatgt tacacacagc cgctggaccc 1380 gttgagccaa tgaacatggt ggacgtatta gtggttgata ttgacgacgg agaattcata 1440 gtgggaaatg atctattaac ctcgctaggg attgacgtcg accgccagct cgaacaacta 1500 gctacgcgct gtgatgacga aaccagtggt gacctgattg atctggaggc agatgagatg 1560 cctgtgaact tggatgtttc tgaacccagt ggagatgatg acatttttgt cgctgtggag 1620 cacctgattg atcgtgcatt gcagaatgga tttcctgtgg agtatgtgga gcaattgcgg 1680 acgacggcgc acgcctacga tatttggcga cttgaactcc gtgatgattc cccagctaac 1740 gtgccaccgc tggaagtacg actgaaggat ggggctcgtc ctacaaagtg taagccccgt 1800 aaatatcctc cgcacatccg aaagttttta cgtgaattca atgctcgtct tgtggattta 1860 ggactcgtct acgagaaccc caagagtcga tgggcgagcc ccgttctgcc agtcaagaag 1920 tcagctgaca ttatggactt aaggcaaaca acggactatc gagcaaggaa tgagcagact 1980 gaagtgatgg cagctgtgat gccgattctt tcattagtcc tggaaaatgc acgtgatatg 2040 aagcactttg gactctttga cttccttaaa ggtttttggc agttgccact agctgagctc 2100 tgtcaagaat tcatgtccta catgactgat gaaaagattc acacacctcg tcgtgtaccc 2160 caaggatgcg cagatgcagc gattcatttc cagaagacga tggaggagtg tttcgcaagt 2220 ttgctgtatg agcatctctt gatctggatc gatgatctct tgttgttcgc tgatgacatt 2280 gaggtgtatc tgaagaagct agctgagctt ttctccttga tgaatcaatt tggattgaaa 2340 ttaagcgtca agaaatcaag tctctaccag acagaagtaa aatggtgcgg acgtgtgatc 2400 aatcaccaag gtgttcgaca tgatccagca cggatcgaca ctttacgatc gctgccgtac 2460 ccgacaactg ctggggagtt acaacaattc gtttgtgcga ttaactggat gcgagagagc 2520 ctagtggatt tttctcggaa ggtcgcgccg ctccaacgcc gtctagatga agcccttgcg 2580 agcacaaggc gtacacgacg cgctgcagcg ggaattgaga tcaagttgaa cgaggaggaa 2640 cggcaagctt tcgaccaagt gaaagagttg ttggcgacgt cgacaacaat gaattttccc 2700 gacgataacg ccacgacgtg cctattcaca gacgcatccg acattggctg ggcagctatt 2760 gtgacccaag tgaaggaata cgacccgaag cggccagtca ccgagcagca acaccgcctc 2820 atccagtgca tgagcgggac tttcactggc agccagttga actggactgt catcgaaaag 2880 gaagccctgc caattgtatt ggcctgtgag aagatggact atttgctgct acggcctcaa 2940 ccatttcgaa tgttttgtga tcatagaaat ttgatccatg ttttcgcgcc atacgaaagt 3000 gtcaagaagc acgtgaaagg caagcttctc aggtgggcga tgaagctcat gaatttcagg 3060 tacatcatcg agcatgtacc aggtcctgac aatgtatggg ccgacatgat ctcgcgatgg 3120 gccggaatca cactccagtg gctacaatga aacgtattaa agctgtacgg cagcaaacgg 3180 caccaaccaa ggtgagactc cgaccactgg acgatgaaga tttcgtttgg ccaacattgg 3240 aggagctttg tactgttcaa gctcagtacg agcgaccggc agggtcgtca actgcagaag 3300 acggaacgat tacactagga gggcgcattt gggtgccttc ggaagcttcc gagttgatcc 3360 agcgactatg cattgtcgcg cattgtggag cccaaggcca ccgaggccag aaggctatga 3420 tcactcacct caagcgactt tttgtgattg acaacgttgc agttatcgtg aagaaattcg 3480 tgaaagattg tttgctgtgc ctgcattgtc gaggggggaa aattatccca cgtccgtggg 3540 gcgaagtgat cgactgcagt acacgcaacc aagtcttaca ttttgatttt ctctctatgg 3600 gaccaagtta tggagatagc aaatatatcc tggttttgaa ggaccacgct actcactact 3660 gtgagttagt cgtggcagac acggctgaca gcagagtgac ggtggaagct ctgttagcat 3720 ggcactcgag gttcggcatt ccgccggagt ggatgtcgga ccaaggcacg cacttcaaga 3780 atgaagtggt ggcggagttg agccgcagac tacggacaca gcagacgttc acaccagcat 3840 actgtccatg gattaatgga tcagtcgaga gagttaatcg ggacattctt caagtcgtca 3900 gggcaatgat tatcacgtac aagataagtc agaaggattg ggtatatctg gttccgatgg 3960 tgcaggcaaa tctaaatcac actgctgtgc catccctcgg aaaccattcc ccattggagc 4020 ttttcactgg actgcagaac ccaactccct tacgtgaatt ttatctttct gatggcaaca 4080 acttgcagac tattcctgaa tctgaggaga tcgatggata tctagccgag ctacggggaa 4140 gtatccaggc catgcatagt gcagtggagg accagcgatt gaagcagcgt cttttaaaca 4200 agaagcgcga acgtggcgag aatatggtga acttttctgt cggcgatttc gttcttcgtt 4260 ctcgagttga tgagaagcac gggaataaac tacaagtgac gtgggttggc ccataccgag 4320 tgatacgcgc tgaagctcat tcattccgag tacagcattt agtcacaggc gacgaaatgg 4380 atgtacatgc gtcgagaatg aagatgtatg cggatgaaag tttggaggta acagacgagc 4440 tgttagaaca cgtatcatct caaggcatcg tgttatctgt cgataaactg aagggtcatc 4500 agtggaacaa cgagattaag gatttcgaga tacaagttgg atggaagggc ttacaaccca 4560 tcgaggattc gtacgagccg atgtcggacc tcgcgaaaga aattcgtgtc ctggtggaga 4620 gctacgtgaa gcagtcagac gaccaagagc ttcggaaggc ctgggacaag atacatccaa 4680 gtggagacca gcggcaggtt ggctcttcag atgccagtgt tgatcagcag caggctaact 4740 caactgctcc gagttccggt ggcgttcgtg gtaagcgtcc agaaagacga cgacacacgg 4800 gcaggaagcg acgacgatct acacaggaac agagcattca gcagaatgaa actatcctcg 4860 gtgagggtag tgctccacga ggagtacagt caagtttggg gcaggccgcg actgggttgg 4920 acagggaaca cggactggac caacctgtag gacgccaaac tcggtcaagg accgcaagtg 4980 caggagtcac agcgactcct cgcaagattt cgagccgatc tatacgacgt cgtagggacc 5040 gtggccagcg cagctagtca tgctgttgtc ggtgaccgac tgagtagagc ggtgaaccaa 5100 gctttggggg ctg 5113 // ID Copia-6_PSo-I repbase; DNA; PLN; 4511 BP. XX AC AAQY01000789; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PSo_; KW Copia-6_PSo-LTR; Copia-6_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4511 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000789; Positions 106747 111257. XX CC Positions [1934-2239] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 47..1759 FT /product="Copia-6_PSo-I_2p" FT /translation="MSKPLKYTNEGVPKNWSGKDCQTYKWAMMNMFKENKL FT KEIAVGDLTRAMLATASAERLEAFDAEQLKIMRMVGTSVPPDALQQIRDKE FT TGSEMWADLCNLYEGKQNEAIKAYTIRRVENEMWSMKLTPGGDTNLHLCRM FT FNLKTELADLQHVIADNTMVDMLLESLPDQIEFERLKSSIYYGADPSVYTP FT KRVRELILAVAARQKEFRGKRSEKQGGHGGQRGGSGKGDEQSRTSGSKKTR FT LCYVCGSDKHLKANCPERTKKQSGADDFEEKRKPRGNCTLRQESGVSSSPT FT QDDADPGVVTGLVAEEQPEMHEELRNAHDEHVEPHGEEELLSDHGAEGTEV FT LLEDSDQGAADYGSGWWFFDTASNSHVTGNRSEFVSFTADTAGIRTVRGVT FT PTIAARIAGVGTVTLATEVGGEQVVMLLDDVFFIPGAEYGLFSPGLAYARG FT FEFDYDIATRSFVVLREGRAVAVATPQESTWGFQVIGPGEREQFTPQDRAL FT CNYTAAEGVGSLALWHERLSAIFEDHGGQRPSTWGAADSAERGHMRCMSSG FT QTEEEDVQEEFGSGNQGAEPGCVR" XX SQ Sequence 4511 BP; 1125 A; 979 C; 1464 G; 943 T; 0 other; ttagggttat gagcccaaag catgctgccg gcggcagcta ctcgggatgt cgaagcccct 60 gaagtacacg aacgaagggg tgccgaagaa ctggagcggc aaggattgcc agacgtacaa 120 gtgggccatg atgaacatgt tcaaggagaa caagctcaag gagatcgcgg tcggagacct 180 gaccagggcg atgctcgcga ctgcgagtgc ggagaggctg gaggctttcg acgcagagca 240 gctcaagatc atgcgcatgg taggtacgtc cgtgccgccg gacgctcttc agcagatacg 300 cgacaaggag acaggatcgg agatgtgggc ggatctctgc aacctgtacg agggcaagca 360 gaatgaagcc atcaaggcct acacgattcg tcgcgtggag aacgagatgt ggagcatgaa 420 gctgacgcct ggaggagaca cgaacctcca tctttgcagg atgttcaacc tcaagaccga 480 gttggcggac ttgcagcatg ttattgccga taatacaatg gtggatatgc tgcttgagag 540 tttgccggac cagattgagt ttgagcggtt gaagtcttcc atttactatg gcgcggaccc 600 gagcgtgtac acaccgaagc gggttcgaga attgattctt gctgtggccg ctcgacagaa 660 agagttcaga ggcaagcgta gtgagaagca agggggccat ggtgggcaac gaggtggaag 720 tggcaaagga gatgagcaga gcaggactag tgggtcaaag aagacgcggc tatgttatgt 780 ctgcgggagt gataaacatc tcaaagcaaa ttgcccggag aggacaaaga agcaaagcgg 840 tgctgatgac tttgaggaga agcgaaaacc gcggggaaat tgtaccctgc gccaggagag 900 tggtgtttca tcgagtccga cgcaggatga tgcggatcct ggtgttgtga cggggttagt 960 ggcggaggag cagccagaga tgcacgagga gctacgaaat gcacatgacg agcacgttga 1020 accacatggt gaggaggaac tacttagtga tcacggtgca gaaggtactg aggtactact 1080 ggaggacagt gatcaaggtg ctgcggacta cggcagtggg tggtggttct tcgacactgc 1140 gtcaaattca catgtgacgg ggaatcgctc ggaatttgtg tcgttcacag ctgacacggc 1200 gggcatacgg actgtccgtg gagtgactcc aaccattgct gcacgcattg cgggcgtagg 1260 aacggtgaca ttggccacag aagtcggtgg tgaacaagtt gtaatgcttc tggacgatgt 1320 gtttttcatc cctggagctg agtatggatt gttttcaccg ggactggcgt acgctcgagg 1380 atttgagttt gactatgaca ttgcaactcg aagcttcgtc gtcttaagag aggggagagc 1440 agtggctgtc gctactccgc aggaatctac ttgggggttc caggtgattg gccctggtga 1500 gcgagagcaa ttcacccctc aggatcgtgc cctgtgcaac tacactgctg cagagggagt 1560 cggctcactg gcactttggc acgagcgtct gtccgcaata tttgaagacc atggtggaca 1620 aaggcctagt acgtggggtg ctgctgactc agcggaaaga ggacacatgc gatgcatgtc 1680 atctgggcaa acagaagagg aagacgtaca ggaagaattt ggatcgggca accaaggagc 1740 cgaaccaggt tgtgtacgct gacctcctaa tccccagtaa agactgcggt acacggtatg 1800 aggccgtgct gatcattatg gacggatact cttgcttcgt cacggtacac ctgcttagtg 1860 acaagcaaag tcctgtgatc aacagactca tgaaggagta tgttctctgg gccgagcggc 1920 aggcgggtcg taatgtcagg ggtgcgttgt acagcaagtg ctgacggata agggcggaga 1980 gtttttcaac gatgaaatga caacctggta cgattcgcaa gggattgaac atgtgaaagt 2040 cggccctaaa ccctcacaac tcaacttgtg cgagcggact catcagtcgc tggagggcat 2100 ggcgaaggcg acgatggcgc aagcaggctt cccccggagc ctatggccgg aagcactgcg 2160 aaacgcggtg tacgtgaaga atcgtgtgta caataagggc acaggcggtg ctccttacga 2220 gatgatgttt gggattcagc cggacgtgca ccatatccgg aagtttggtg cactggctta 2280 tgtacacgtg ccggtgtctc ctcagcggaa gaagcaccac aataacgcaa gaattggctt 2340 tgtgctcggg tatgcagaag atgtgatcgg atgtaaggtc tattttcctg acgagcacac 2400 tgctaagttt gttcctgatc tgagagtggc tgaggacgtc atgtaccgtg atcgctacga 2460 agtggacgtg gatgacgagg acttggagtc gttgcacttc gtcagacgca cggtgaccga 2520 cgccagtgcc accggggtga tgccgatcag gcttcaaata cgaacatggc tacacgggcg 2580 agtacagcag tggcgggact agagcaaagc ggtgaaatgc agtctacttt tgaggacgcc 2640 gttgtcgaga atattattat cgaggcggga gatgaaagcc aagctgttgt tgatggagag 2700 tcagtgaatg aagagcagca ggacaacagc ggtggtgccg acgagactgg cggcactggc 2760 gagcgcctcg atggaggcaa gtgtggaatt cgtacgctta cgactcctgc gaacgatgat 2820 gagaaagtca ctgacagcgg tgaggacgct gctgatgaag acgacggtgc tgctgggagt 2880 gacgacgccg tgtaggtaac cggaacgtgt gggtcatcgc tggtaggagg agcgcatagt 2940 gatgctgagg aagaggatga cgatgaaatt ctcaatgatg atgatgttac tgtggcaagt 3000 gtcttggctc cggacgagca cgagggagat gcaaacccgt cgcgcactca gtcactgcaa 3060 gaggacttcg gtgagaccga atcggtcaag agggtgcatt cgagtggtca tgcagcggct 3120 ggcgagattt ttgacgctag tgtgatgttc ccaccgaccc tgcggatgaa tatcgggaag 3180 cggtcgcatc gtgacgaaac tccgtcggaa gaggtgcgcg tcgagcgaga tgcagcaaag 3240 acagatgtga agaagacacg caccggtcct cgcgagtacg acgagcgtcg ccgtcccagt 3300 tacttgaagg actatgtgat gaacgctgcg ctcaatacct cgcgtattct ggacaagaat 3360 ggacaaccca taagagcaag taatgtgaag attcctcgga accaccgtga gatgatgcgc 3420 tctaagtggc gagagttctt tctgatgggc gaaatggagg agattgcagc gctgaaagct 3480 aaaggcgtta tcatggagat tcctggcgaa gagatgcctg aggatgcact gctggtgaat 3540 acgatgtggg tgtatgactt gaagacggac caccaaggat atgtgatccg cttcaaggct 3600 cgcattgttg cattcggcaa ttatcagcga cccgggatag actttcgtga gacgttcgcc 3660 cccgttggta ggatgtcgtc gtttcgactg ctgctggcga tagcagcaga gttgggactg 3720 agtgtgtttg gtggagatat aaacaccgca tacttgaatg ctcgtctgag tattcggcag 3780 tacctacgat cgatcgatgg ttatccctgt aaagtgaagg ggcatgtgta agtggtactg 3840 aaagcattgt atggactgcg gcagtcaggt cgcgagtgga atacggaact gaaccagtgg 3900 tttctggatc acgggtacct gcgatctctg acggagccgt gtctgtacta tcgtctcgag 3960 ggtgagacga ttgcgtacgt gctagtctac gatattatcg ttgcgacaaa cgacgagccg 4020 tacaaggagc gcttgttcaa ggaactgaac gaagcgtatg ggatcaagga ccaagggcag 4080 ctcgcgcagt acttgggcgt tgaggtcgag cagaccacgg agcggattac aattcgacag 4140 gagaagtacg caaatgagat tttgaataag tttggctaca gtgaggctca tgctgttggg 4200 aatcccatgg aggtgaatgt gcgtctggcg ccgagcagtg atgaagtggt ggcggataca 4260 agcttcccat accacgtgat ggctacaagc ccaacctaca gccgccgcac gcggcacatt 4320 gagctacgtt ggcactatgt gcgggagcaa gtgcagaaag gagctattga gctgcgcaag 4380 gtgaagggtg agcagaaccc tgccgacacg ttcactaagc ctcttgacaa gaagagactc 4440 aaggcgttgc tgttgctggc cggtgttgga agcgtgcaat aggcgaagag tgctcttcga 4500 ggaggccgtg t 4511 // ID Gypsy-18_PSo-I repbase; DNA; PLN; 3444 BP. XX AC AAQY01000159; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PSo_; KW Gypsy-18_PSo-LTR; Gypsy-18_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3444 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000159; Positions 206646 210089. XX CC 'GCGTC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1171..2916 FT /product="Gypsy-18_PSo-I_1p" FT /translation="MCPDTGADKCILPADAVNQVRAMGRTLTTTRLLEPEP FT VEGVGGNVTFCHEAAQIDVQIRTSAGPVNLYKLDCLVVEGEKQFLLSRKVM FT KRLGIDVKRAFEQLVNTSIELNHDDFPDEPEVGETVDAEIKFELDRMCEEV FT KKVLSDSQYKDFRDDVIMLSREFSRLYRTRIGHDEPALVEPLVVTLKKGEE FT PVRCKPRRYPPAQLQFLEVHAAQLLESGLVRKNNLSKWASNAVPALKPGSS FT GDFRVTNNYIKINNKTVPIAGTMPHFSIILKFVSGVKFIAKFDMFKGFWQI FT MLAEECQEMFSFMTHDGVYTPLRVPRGATDSALHFQNQMQTVYKPLLYKGA FT LIWIDDIIVYGRTEEEFLANLRLFYELTAKHRLKLNAKKSVLMAFEVSWCG FT RIIDGQGIRQDPERLSALVSLPLPQTTADLQRFLCACNWIRDSVIDFARVF FT EPMQSKLNGALVSRSRNKHSARAAALTWSDDERGAYSQALQSIANSAELYF FT PEDKTTICLLTDASDYGWSIILTQVRDWRDGVPVEEQAHELLICQGGVFRG FT AQVHWSVVEKEAYPVVRACISLDCILEREGVQSFL" XX SQ Sequence 3444 BP; 883 A; 814 C; 1031 G; 716 T; 0 other; aagtatactt tagttgcgag cagttcgcaa tcgatagtca agtagaccaa gatgtcgtca 60 cgcttcaggc tggatagcga cggcgacgcg gagatgacgg ttccgcagcc ggtctacgag 120 tacatcgtgc cgccaaagct ggtcgactgg gaccaagcat cgctagtgaa gtggcggagg 180 gcacgagagc gaggagaacg tgagggagcg ctgcgagtgg acgggcgaag actacaaggc 240 cgtcgtccgg agtgtacgca gtgctattca tcctgacatg atgacgttcc tcgctacgta 300 cgagattggc aaggacaagg cgcagatcac ggacgaggac atcatgagca aggtcaagga 360 gaggtgcgag atcacgaatc gcgactatct tgcgaatccc tcagcgcttt tcgcgcaaca 420 gctaaagatg gacatgacgg tcaaggatgt gcctgaccgt gtgtccaagt atttccggca 480 gttcgagaaa atcattgccg acaacggctt ccacgagaat ctgggccgtg gctccccgac 540 agacgatgac tatgtggcac ggatgaagca gaggaccaag attctggtcg ataacctgtc 600 gccacccatg ctgcgggacg agatcaaagg gatgctggag ttagtcaagt ttcgccacat 660 ccgcattaac gatcagttac tgtacaaact ggtactcgag cgtgctgagc tgcagcaatt 720 attctacaat cgtttccgac aagctgatgc tgcgcacaca acgtctaaat caagtaaccg 780 gaagagcggc aaggctgtgt ctgtgccggg gaatatcgtc gtgaaacggt gcaacagagc 840 ccgaagggca gcatccaagc aacgctacac gcaggaggca gcgacgttgc acggccccaa 900 caaggtagtg gccctaaagg acgaccgccg ccgcgcacgg gatgcctaca ttgtaaggga 960 gaacattggc tgcgggattg cccggtcgcc acacctgatg agaagaaagc tgcacgggag 1020 gcacagcagt ccaagaattg gaaggtgaag agagcggtcg ttggtaagca gcaggaatgt 1080 gggggtggag cagaagaagg cgcatctcca gcaaaaggca gtgatgacga ggagtataca 1140 gtccttatta acggagctgt ggagatatcg atgtgtccag acacgggagc agacaagtgc 1200 attctcccgg cggatgcagt gaaccaggtg cgggcgatgg gccgcacact tacgactaca 1260 cgcctactcg aacctgaacc agtagaagga gtcggcggca atgtcacatt ttgtcatgaa 1320 gcagcgcaga ttgacgtgca gatccgcacg tctgcagggc cagtgaatct ctacaagctc 1380 gactgtctgg tggtggaagg tgaaaaacaa ttccttctga gccgaaaagt gatgaaacga 1440 ctgggcattg acgtgaagcg cgcgttcgag cagctcgtaa ataccagtat tgagcttaat 1500 cacgatgatt ttcctgatga acctgaggtg ggtgaaaccg tggatgcaga gattaagttt 1560 gagttggatc ggatgtgtga ggaggtgaag aaggtgctaa gtgactccca gtacaaggac 1620 tttcgagatg atgtaattat gctcagcagg gagttcagca gactgtatcg gacacggatc 1680 ggacatgatg agccagcact ggtagaaccc ctggttgtca cgctgaagaa gggagaagag 1740 cctgttcgct gcaagcctcg cagatatcct cctgcccagc ttcaattcct cgaagtccac 1800 gccgctcagc tgcttgagtc cgggttggtg cgaaaaaata atctcagtaa gtgggcgtct 1860 aatgcagtgc cagcgctgaa gcccggtagt agcggagact tcagggtgac gaacaactac 1920 atcaagatca acaacaagac agtgccaatt gcgggtacca tgccgcactt ctcgattatt 1980 ttgaagttcg tctcgggcgt gaagttcatt gccaagttcg atatgttcaa gggattctgg 2040 cagatcatgc tcgcggagga gtgccaggag atgttcagct ttatgacaca tgatggtgtc 2100 tacacgccac tacgtgtccc gcgaggagcg acagattccg ccttacattt ccagaatcag 2160 atgcagacag tatataagcc actgctgtac aaaggagctc tcatctggat tgatgacatt 2220 attgtctacg gccggacgga ggaagagttt ctggcgaacc tgagactttt ctacgagttg 2280 acggccaagc atcgcctgaa attgaacgcg aagaagagtg tgctgatggc gtttgaggtg 2340 tcatggtgcg gccggatcat cgatggccaa ggcatccggc aggacccgga gcgactgtcg 2400 gctctagtgt cgttgccatt gcctcaaacg acagctgacc tccagcgttt tctgtgtgcg 2460 tgcaactgga ttcgagacag cgtgattgac tttgcacgag tcttcgagcc gatgcagtcg 2520 aagctcaatg gagcgctggt gagccgcagc agaaacaagc actcagcaag agcagcagcc 2580 ctcacttggt ctgatgatga acgaggtgca tactcgcaag cgctccagag tattgcaaac 2640 tcggccgaac tctattttcc cgaagataag acaacaattt gtctgctgac tgacgccagt 2700 gactacgggt ggtcaattat cctgacccag gttcgagatt ggagagatgg agttccagtt 2760 gaagaacaag cccatgaact tttgatttgc caaggtggtg tctttagagg cgcacaagtg 2820 cactggtcag tcgtcgagaa ggaagcctac cccgtggttc gagcgtgtat ctcattggat 2880 tgcatcctgg agagagaagg ggttcaaagc tttctgtgac cattctaatt tgattcagat 2940 tttctcgcct tcagaagacg tcaagaagca cacccggggc aagttactcc ggtgggcgct 3000 gcgcatttcg tgtttgcgat acacgactga gcatatcgac ggcgaacgga acctgtgggc 3060 tgatatagta tcgcggtgga caccgcaggg acagccacca cagcgcggaa tcgttcaggt 3120 gaaggcagca cgggtgggta atgggacgac actttcgagg ctgcgaccac tgcaggacga 3180 gcagttcgag tgggccaaca ttggagtcga tcaagaagtc gcagaccgcc gcagataatc 3240 caggtccagg atttgagcag gacgggaatg gtatttggac tgcaggcggt aaaatatggc 3300 tgccatccag tgatgagggt ctcgttacgc gtgtgatgat tattgctcac tgtggcgtac 3360 gagcacaccg cggagcggac gctatgctac aattactcag cgttgcaaga ctacaacaga 3420 gcataatcaa gtcttcgggg gctg 3444 // ID Gypsy-51_PIT-LTR repbase; DNA; PLN; 233 BP. XX AC AATU01004506; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-51_PIT_; KW Gypsy-51_PIT-I; Gypsy-51_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-233 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004506; Positions 600 368. XX SQ Sequence 233 BP; 59 A; 60 C; 49 G; 65 T; 0 other; tgaataacaa gaggttcgct ccagttgtgg tatgaccagc tgacgcatac gacgtgagac 60 tcaaatttct agttttcctt tctcagcttg aagtgttgtt gtgggcagcc acacagcata 120 catacttaat ataacttact tcttcttttg ccaaataagg ctcaggtcct ctgcaagcca 180 cgacctacag ctaacacctt gctgagagcc cctctgcgag ccaagggttg tca 233 // ID Copia-7_PIT-I repbase; DNA; PLN; 4468 BP. XX AC AATU01002570; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PIT_; KW Copia-7_PIT-LTR; Copia-7_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4468 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002570; Positions 11448 6981. XX CC 'GTTGT' target site duplication CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS join(869..3418,3422..4468) FT /product="Copia-7_PIT-I_1p" FT /translation="MPATRQYDDRDEFVFAASTETSPAWILDSGARSHMTH FT DRSDIDEFHALQEPTDIAVASGQRLRAVGTGVVRFTVGNGPVIKVTEVLYV FT PDLDRRLLSIPSLVAKGAAISFDGDGCSIRFGDKVVAHVRKCRKLFVLSVT FT LIKPEDEAAEIAASALVPTEELWHDRLGHVSKKKLVLASRAASGIPSFTVS FT DVTSGEPCVGCSCGKMTVNPFSRQSGSTVKTQGLLDIVHSDVMGPMKPLSK FT GGAQYVVTFVDDYSRFVHIYLMKAKSEVFSRFQEYKQLVETQTGCKIRCLR FT SDNGGEYVNKRFKELFVAYGIVHQTSTPHTPQQNGLAERMNRTLVEMARSM FT VHFRGLDRGWWGEAVCTEAYIVNRVPNTARPQSTPLEVFTGVKPDLSHLRV FT FGAKGFVHVDRSRRSKWDAKAHRCIFLGYAPGSKAYRVWDCEDERLVTTRT FT VALDERPVDSYHTVIHTTQQAPMVIDDDANALQRQSSPPANTDGETDVDME FT ENNNATVDMEVDDAPDMSLQVQRGGHELSRRGGNERHAPMLPSHLSSSVVS FT TRQLAQPSSIESTAVVPTLSQAWRRPDTSLSDNLVFGPTRPRQARISNQFQ FT PRLLEAGPPSASSRTPSRYPALPPSQARNSQDDAASLLLENGDNERGNGYS FT SDESTAEPDSKRPRIDDGYEIALSAVKSVPNSFMQAMKSPDAAKWKEACRA FT EIRAHARNHTWDLVYRPPGARVIGHKWVFALKRDEHGNITRYKARLVALGC FT FQTFGVDYTSTYSPVASLSTVRIFLAVCCQLGFVDKQYDVETAFLNGNLEE FT VVYMVPPEGIRVQDGMVCRLRRSLYGLKQAAAVWHKTIRQVFLAMEFKCRS FT EPCLFVRVGSHGPVFVVLFVDDLLIGCAKAEEASSIAANLITHFRLKSLGD FT AKYILGMELHYDLKKGELFVGQSHYILRMLERFGQASAYPARNPSVVGQDL FT RASDEHPCLDSKTPYRELVGSLLYVANATRPDICIAVSILSQHLENPCEMH FT WRAAVQVLRYLKGTSYTGFKYMRAIEFKMVAFSDADWGSDFATRRSTSGVL FT VQICGGPVLFKAKKQATVALSSAGAEYMAVAVTVKEVLWARQLLTEMTVKI FT HSATTVLVDNKAAISMATNSGYTPRAKRIDLRVHFVRDHVQKQTIKFEHVP FT SKLELADYMTKPLPTPQFIALVRSSGVVNNQVQEEQVEGE" XX SQ Sequence 4468 BP; 1091 A; 980 C; 1281 G; 1116 T; 0 other; ataacgccgt tggagtccaa cgacatcttg cgagaggaca actacttcct atgggaattc 60 aactgccgca tgacgctcgc gagcaaggac ctgctagagc atgtacaaga tcttacgggg 120 atgaagccag cagatgcagc gaagcgggag actgctgagt ggaaagccgc cgactttaag 180 gcgctggctg tgatctccaa gctgttgagc ccagtctatc agacgatgat tcgagaatgt 240 tcgtctgcta aagaagcgtg gaagacgcta cgtgattttt tgtcaagaag aatttgcaca 300 accgagtgat gcttcggaag ctgctgcatg aatttcaaat ggccccagga tcggatttgc 360 tggatcacct gttaaagttt gacgacctct gtttacgact atctgctgtt ggtgacgatt 420 taagtgatga tgagaagttg gtgatcctcc tggggagctt gtcgagtgaa tatgacgcga 480 tggtgaagat tattgaggct cattcgtcgg taacgttgat tgatgcgaaa gagatgttgc 540 gccgcgagtt tgagacgctg cggaagcgtg acaagcaaga ggaagcgttt aatgcagtgt 600 cgcaagatgc acatgttggc agacaaggaa acaatgggcg tagtaagtgg ccacagtcag 660 ggattccggg tcgtggtcga ggttacggtg gtcgaggttc cggtggtcga ggttccggtg 720 gtcgaggctc cggtagtggg ggagccggtg gtcgacgtgc tggtggtcgt ggtggcgacg 780 gaagtcaacg aggacgtggg ggtcgcggag gctcaggttt ctcgggtcag tgttttgaat 840 gtcaccagta tggacacagg cgtagtgaat gcccgcgact cgccaatatg atgaccgtga 900 tgaatttgta tttgctgcgt cgacggaaac ctcacctgcc tggattttgg atagtggagc 960 tcgttcgcat atgacgcatg atcgttctga tattgatgag ttccatgcat tgcaagaacc 1020 gacggatatt gcggtcgcaa gtggccaacg attgcgtgct gttgggactg gagtggttcg 1080 ttttactgtt ggaaatggac ctgtgatcaa ggtgactgaa gttctctatg tgcctgattt 1140 agacaggcgc ttgctctcaa ttccatctct tgtggcaaaa ggagcagcga ttagttttga 1200 tggagatggc tgtagcattc gttttggtga caaggtggtt gcacacgtga gaaagtgtag 1260 aaagttattt gtgttgagcg tgacattgat taaacccgaa gatgaagcag cggaaattgc 1320 tgcatctgcg ttggtgccta ctgaagaact gtggcatgat cgacttggcc atgtatccaa 1380 gaagaagctc gttctggcgt cgcgagctgc aagcgggatt ccttctttta cggtgagtga 1440 tgtgactagc ggagagccat gcgttgggtg ctcgtgtgga aaaatgactg tgaatccgtt 1500 ctcaagacaa tctggcagca cagtgaagac ccaaggctta ctcgacattg ttcactcgga 1560 tgtcatgggc cccatgaagc ctctttcgaa agggggagcc cagtacgtgg tgacttttgt 1620 cgatgactat tcgaggttcg tgcacattta cctgatgaag gcgaagtcgg aggtgttttc 1680 gcgatttcaa gagtacaagc agttagtgga gacgcagact ggttgcaaga ttcgctgcct 1740 gagaagcgat aatggtggag aatacgtgaa caagcgcttt aaggaactct ttgtggctta 1800 cggtatcgtc catcaaacat cgacaccgca caccccacag caaaatggac ttgcagaaag 1860 aatgaatcgc actcttgttg aaatggcccg gtcaatggtt cattttcgcg gtctcgatcg 1920 aggatggtgg ggcgaagcgg tatgtacgga agcatacatt gtgaaccgtg ttcctaacac 1980 cgcacggcca cagagcactc cacttgaagt tttcaccggt gtcaagcccg atctcagcca 2040 tctccgcgta tttggagcga aaggttttgt acacgttgac aggtcacgtc ggagcaaatg 2100 ggacgctaaa gcgcatcgct gcattttcct cggatatgcg ccaggatcaa aagcgtatcg 2160 agtctgggac tgtgaggatg agcgactagt gacgacgagg acggttgcac tggatgaacg 2220 cccagttgat agctatcaca ctgtgattca cacgacacaa caagctccaa tggtgattga 2280 cgatgatgca aatgcgttgc agcgacagtc ttcacctcct gctaatactg atggtgagac 2340 tgatgttgac atggaggaga ataataatgc tacggtggat atggaggttg acgacgcgcc 2400 ggatatgtca cttcaagtgc agcgtggcgg acacgagttg tctcgtagag ggggaaatga 2460 aagacacgca ccgatgctac catcacattt aagttcaagt gttgtttcta ctcgtcaact 2520 cgcgcagccg tcatcgatag agtccacggc ggtagtacca acactatctc aagcatggcg 2580 tcgaccggat acttcgttga gcgataatct ggtatttggc ccgactagac cacgccaagc 2640 tcgtatttcg aatcagttcc aaccccgcct tctagaggct ggacctccgt cagccagctc 2700 gagaacaccg tccaggtatc cggcgttacc cccgagccaa gcccggaaca gtcaagatga 2760 tgctgcgtcg ctactactgg aaaatggaga caatgaacgt ggaaacggct actcgtcgga 2820 tgaaagtact gctgaacctg actctaaacg gccaagaatt gatgatggat acgaaatcgc 2880 cctctctgct gttaagtcag ttcccaattc gtttatgcag gcgatgaagt cacctgatgc 2940 cgccaagtgg aaggaggctt gccgtgctga aattcgtgct catgcgagaa accacacttg 3000 ggacttggtg tatcgccccc caggtgcgcg agtcattggc cataagtggg tgtttgcact 3060 caaaagagat gaacatggca acattacccg atacaaggcg agactggttg ctctcggttg 3120 ttttcagacg tttggtgtgg attacacgtc gacctattcg cctgttgcga gtttgagcac 3180 tgtacgcata tttttggccg tttgttgcca gcttggtttc gtggataagc aatacgatgt 3240 ggagacagca ttcttaaacg gcaatctaga agaagtagtg tacatggtgc caccagaagg 3300 gattcgagtt caagatggca tggtatgtcg tttacgtcgc agcctttacg gcttaaaaca 3360 ggcagcagca gtttggcaca agacgattcg tcaagtgttt ctcgcaatgg aattcaagta 3420 gtgcagatca gagccgtgtc tttttgttcg tgttggctca cacggtccgg tgtttgtcgt 3480 tttgttcgtg gacgatctgc ttattggttg tgctaaagca gaggaggcgt caagtattgc 3540 tgcgaattta attacgcatt tccggctgaa gtcactagga gatgcaaaat acatccttgg 3600 gatggagctt cactatgacc taaagaaggg ggagctgttc gtgggccagt cgcactatat 3660 tttgcggatg cttgagcgtt ttgggcaagc gagtgcatac ccagctcgaa acccaagtgt 3720 agtcggtcaa gacttacgtg ccagtgacga acacccttgt ttggactcaa aaaccccgta 3780 tcgggagctt gtcgggtcgt tactgtacgt tgcaaatgca actagacccg atatttgcat 3840 cgctgtcagt attctttctc aacatcttga aaatccgtgc gaaatgcact ggagagctgc 3900 ggtgcaagtg ctgcgttacc tcaaggggac ctcttatact ggattcaagt acatgcgtgc 3960 tattgagttt aaaatggtcg catttagcga tgctgactgg ggcagtgatt ttgctacgcg 4020 ccgttcaact tctggagtgc tagttcaaat ttgtggtgga ccagttttgt tcaaggccaa 4080 gaaacaagct acagtcgcgc tgtcatcagc tggggctgag tatatggcag tcgccgtcac 4140 ggttaaagag gtgttatggg cgcggcagct actgacagag atgacagtca agatccatag 4200 cgctacgacg gtgctagttg acaacaaggc tgctataagc atggctacca acagcgggta 4260 cactcctcgt gccaaacgca ttgatcttcg tgtacacttc gtccgtgatc acgttcaaaa 4320 gcaaacaatt aagttcgagc acgtgccatc caagctcgag ctggccgact acatgacgaa 4380 gcccctaccg actcctcagt ttattgctct cgtgagatcg agcggagttg tgaacaacca 4440 agtgcaagaa gagcaagttg agggggag 4468 // ID Gypsy-21_PIT-LTR repbase; DNA; PLN; 288 BP. XX AC AATU01000497; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PIT_; KW Gypsy-21_PIT-I; Gypsy-21_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-288 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000497; Positions 95673 95960. XX SQ Sequence 288 BP; 83 A; 72 C; 75 G; 58 T; 0 other; tgtagtgtgt ggcaagcaag gaggcgtacc tcaacggcaa ggaggctatc ctgaatcaag 60 aaccccatcc caagctacag cgtcgtctat caacatgagg ttgcagtctt actgcaaccc 120 tggtgctcga ctctcaaggc tgtgcctagg gtgaagcctt tggtcctgat aggagtagga 180 ggagtcgagt agaacgcagg agcaggagtt cgtcaaaaga aagctcactt cttaacttgc 240 aatcaacaag caccagcatt tcagcaacgc aaagcggtaa ctaccaca 288 // ID Copia-2_HAE-I repbase; DNA; PLN; 4105 BP. XX AC ABWE01000051; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_HAE_; KW Copia-2_HAE-LTR; Copia-2_HAE-I. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-4105 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000051; Positions 63233 67337. XX CC Positions [1331-1858] - Integrase core CC 'CAGCA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..4105 FT /product="Copia-2_HAE-I_1p" FT /translation="MSPTTFEKVDKFDGTNYPLWSFKMKMYLRSRGLWGQV FT DGSAPLDLSLMEQAHAAIVLSLTDSQVLHVVATTTAVEAWAVLRGMNESRD FT MASRMWLKEKFATFRFTTSTMEKHFEELEALVLQMGSAGCRPDEDDLCATL FT LRSLPSSFDGLVQAFRMSVGKFTYGDVMSRVLAEDIRQKEQGRIEQETAML FT AGRNKQVIKKNGFDKRAVTCYQCGKRGHFKRDCPNAGNDAYESNVTFHADI FT THGGVCREWVVDSGASNHMCASRDAFVEYRADHGGRTVSIAKSGATLRVLG FT TGIVLLRMNVGARTVCARLENTLHVENLSRNLFSIPAILSKAMRVNMDSRG FT CKIVSNGAVVGSGRKRVNLIYLDVVGEAGCHIATDSIGAAPTQFVKPSRST FT PVVSGDLWHRRFGHASREAVKKALASNSIVVGDVSTKVCDVCELSKQARKP FT FPVHDDHGNASSDVVCSDVLGPVTPASRSGCTYAVTFIMMKTRFVKVYPIM FT RKSDVLAKFIEFRQYMQTQTGVSVRAIRSDNGGEYASRDMKSYCVANNVRQ FT EFTIPHNPQQNGMAERANRTLVEMTRCMLKDSGLSKSLWAEALVTAAYVRN FT TISTTARPHTTPYKETFKRQFEYGRLRVFGSVCYAHVPKTKRLKFDDSGVR FT CRMLGYLETSKGYRLLNLETGQILHSRSVTFDETASTSRVGERSDPVLKTE FT SIDIESISLEPRQTTIEKPEHGEHQLQVLARPDERSIVQAQDPSGGAMTPV FT QYPPYDCTDIVPTDLEESMSPRSAGRLAITSVPSGTPDRDGMNQRRVRPAR FT KKRGVVRYEDEFNGMRRGEFNLDDYEDEIDGLHCYSTVLDDERQSTYAGIM FT RSEMRQQWKSEMDAEMQSLAQHHTWDLVNLPSGKKLIGSRWLFKVKRNADG FT SVNKFKARLVAQGFTQKYGIDFNETFAPVAKQSTVRTVLAIAAGKDLEAEQ FT VDVDTAFLFAPIDDELYIKQPDGFEDAEYPNKVCLLRKSLYGTKQAARQWN FT KTLDDFFRSKDFVRADADPCLYTRTNDSEYSAVVVYVDDMIVVSNDSVGVR FT KIIKELKTKFSIKELGEPRFILGIEVTRDRSARTITLSQRGYILQLAERFR FT MMNAKPVYLPADANSRLTRAKDDALYITNVPYRELVGSLMYIVTCTRPDIA FT DAVGNVAKYCEQHTSEHWSAAKRILKFLMTTREIALVYDGKKPGDLIGFAD FT ASWASDEDTRRSTTGYVFMLCGAAVSWRSQRQPTVAGSSTEAEYMGLYFAT FT QEMVWLRRLLKDLKMLKDEPTTVYQDNQGAIAIAKNPVFNSRTKHVDTKYH FT FSRERVEANELRVEYMPTGTMVADALTKSVARPKLEQFQYAVGLKPLNRVS FT IKGG" XX SQ Sequence 4105 BP; 975 A; 1095 C; 1252 G; 783 T; 0 other; ggttatgagc ccaactacgt ttgagaaggt cgacaagttc gacggcacca actacccgct 60 gtggagcttc aagatgaaga tgtacctgcg gtctcgagga ctgtgggggc aagtggacgg 120 gagcgcgccg ctcgacctct cccttatgga gcaagcgcat gcggcgatcg tgctcagctt 180 gaccgactcg caagtgctgc acgtggtggc cacaacgact gcagtcgaag cgtgggcggt 240 gctccggggg atgaacgagt cgcgcgacat ggcaagtcgc atgtggctca aggagaagtt 300 cgcaacgttc cgattcacga cgagcacgat ggagaagcac tttgaagaac tggaagcgct 360 cgtcctgcag atgggcagcg ctggatgtcg gccagacgaa gacgacctgt gcgcgacgct 420 gttgcgcagc cttccctctt cgttcgacgg cctcgtgcaa gcgttccgta tgagcgtcgg 480 caagttcacg tacggagacg tgatgagtcg tgtgttggcg gaagacattc ggcagaagga 540 gcaaggccgc atcgagcagg agactgcgat gctagctgga agaaacaaac aagtgatcaa 600 gaagaacggg ttcgacaagc gcgctgttac gtgttaccag tgcggcaagc gcggacactt 660 taagcgcgat tgcccaaacg cgggcaacga cgcgtacgaa tcgaacgtga cgttccatgc 720 cgatattacc cacgggggcg tatgccggga gtgggtggtc gacagtggag cgtcgaacca 780 catgtgcgcg tctagagatg cgtttgtgga gtaccgtgct gaccatgggg gtcgcacagt 840 ttcgattgcc aaatcgggag cgacactgcg agtgctcggc acgggcattg tcttgctacg 900 aatgaatgtc ggcgcgcgga ctgtatgtgc gcgactcgag aacacgttgc acgttgaaaa 960 cttgagccgc aacctgttct cgatcccagc catcctgtcc aaggcaatgc gagtcaacat 1020 ggacagccga ggttgtaaga tcgtgagcaa cggtgctgtc gttggcagtg gcaggaagcg 1080 agtcaatctc atctacctcg atgtagttgg ggaagctgga tgccacatcg cgaccgactc 1140 cattggtgcg gcaccgacgc agttcgtgaa gccgtctcgg tcgacgcctg tcgtctcagg 1200 cgatctgtgg catcggcgtt tcggccacgc gtcgcgtgag gcagtcaaga aggcgctggc 1260 aagcaacagc atcgtcgtgg gcgacgtcag tacgaaggtg tgcgatgtgt gcgagctgtc 1320 aaagcaagcg cgcaagccgt tcccggttca tgacgatcat ggcaatgcaa gctcggacgt 1380 cgtgtgctcg gacgttcttg ggccagtgac accggcgtca cgctcggggt gcacgtatgc 1440 agtcacgttt atcatgatga agacgcggtt tgtaaaggtg tacccgatca tgcgcaagtc 1500 ggacgtgctc gcgaagttca tcgagttccg gcagtacatg cagacacaaa ctggtgtcag 1560 tgtgcgcgcg atcaggagcg acaacggcgg tgaatacgca tcgcgcgaca tgaagtctta 1620 ctgcgttgcg aacaatgtcc gtcaagagtt cacgatcccg cacaatccac agcagaacgg 1680 catggctgag cgcgcgaacc gaacgctggt tgagatgacg cggtgcatgt tgaaggacag 1740 cggcttgagc aagtcactct gggccgaggc gcttgtcaca gcagcgtatg tccgtaatac 1800 catcagcacg accgctcgac cgcacacgac gccatacaaa gaaacattca agcgtcagtt 1860 cgagtacggc agactacgcg tgttcggcag cgtgtgctac gctcacgtac ctaagacaaa 1920 gcggttgaag ttcgacgaca gcggcgttcg gtgccgcatg ctcggttatc ttgagacgtc 1980 gaaggggtac agactgctca atctcgaaac ggggcagatc ttacactctc gaagcgtcac 2040 gttcgacgaa acagcttcga ccagtcgtgt tggtgagcgc tccgatccag tcctgaagac 2100 agaatcgatc gatatcgagt cgatttcgct cgagccaagg cagacaacga ttgagaaacc 2160 agagcacggc gaacatcaat tgcaagtgtt ggcgcgtcca gatgaacgca gcatagtcca 2220 agctcaagat ccatcaggag gcgcgatgac tccagttcag tacccgccat acgactgcac 2280 cgacatcgtg ccgaccgacc tcgaagaaag catgtcgcca cgatcagctg gacgcctagc 2340 gatcacgagc gtgccatctg gaactccaga tcgtgacggc atgaaccagc gtcgcgtgag 2400 accagctcgc aagaagcgcg gagtcgtgcg gtacgaggac gagttcaacg gcatgcggcg 2460 tggcgagttc aaccttgacg actacgagga cgagattgac ggactacatt gctactcgac 2520 ggtgctcgac gacgagaggc aatcgaccta cgccggcatc atgcgctcgg agatgcgaca 2580 acagtggaag tcggagatgg atgcagagat gcagtcgctt gcacagcatc acacctggga 2640 cctggtcaac ctgccatctg gcaagaagct aatcggaagc agatggctgt tcaaggtgaa 2700 acgcaatgcc gatggtagcg tcaacaagtt caaggcgcgt ctcgtcgctc aaggcttcac 2760 gcagaagtac ggcatcgact tcaacgagac gtttgcgcca gttgccaagc agtcgacagt 2820 acgaacggtg ctcgcaatcg cggcgggtaa ggacttggag gcggagcaag tcgacgtcga 2880 caccgcattt ctctttgcac cgatcgacga cgagctatac atcaagcagc cagatggttt 2940 tgaggatgcc gagtatccga acaaggtgtg ccttttgcgc aagagtctct atggcacaaa 3000 gcaagcggct cggcagtgga acaagacgct tgatgacttc ttccgcagca aggacttcgt 3060 gcgcgctgac gcagacccgt gtttgtacac gcgcaccaac gacagcgagt actcagcagt 3120 cgtcgtgtac gtggacgaca tgatcgtggt gagcaatgac tctgtcggtg tgcgcaagat 3180 tatcaaggag ctcaagacca agttcagcat caaggagctc ggcgagccgc gtttcattct 3240 cgggattgag gtgactcgtg ataggagtgc tcgtacgatc acgttgtcac agcgcgggta 3300 catactgcag cttgctgaac ggtttcgcat gatgaatgcc aagccagtgt accttccagc 3360 ggacgcgaac tctcgtctaa cgcgtgccaa agatgacgct ttgtacatca cgaacgtgcc 3420 gtaccgtgaa ctcgtcggga gtttgatgta catcgtaacg tgcactcggc cagacatcgc 3480 ggacgctgtc ggcaatgtgg ccaagtattg cgagcagcac acgagcgagc actggtcagc 3540 ggcgaagcgc atcctcaagt ttctcatgac aactcgcgag atcgcgttag tgtacgacgg 3600 caagaagccc ggcgatttga tcggctttgc cgatgcgagt tgggcctcag acgaagacac 3660 tcggcgctca actaccggat acgtctttat gctgtgtggt gcagcagtgt catggcgctc 3720 gcagaggcag ccaacggtcg cgggatcaag cacggaagca gagtacatgg gtctgtactt 3780 tgctacccaa gagatggtgt ggctgcggcg tttgctcaag gacctcaaga tgctcaagga 3840 cgaaccaact acggtttacc aagacaacca aggcgcaatt gccattgcga agaacccagt 3900 attcaactca aggacgaagc acgtcgacac gaagtatcac ttctcgcgcg aacgcgtcga 3960 agcgaacgag ctccgcgtcg agtacatgcc taccgggact atggttgcag acgctctcac 4020 aaaaagcgta gcacggccca agctcgagca attccagtac gcggtcggcc tcaagcccct 4080 caatcgcgta tcgatcaagg gaggg 4105 // ID Kolobok-1_FraCyl repbase; DNA; PLN; 9682 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Kolobok; DNA transposon; Transposable Element; Kolobok-1_FraCyl. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 9682 BP; 3058 A; 1887 C; 2116 G; 2621 T; 0 other; ggtggtatca tcacgaatcc ttcgatatgg tgcgcgatga gtccaaaaat cacggaattt 60 ggaatttcac ccccatcgat tatcaccgtc tttgatatcc ttttttttta aatcaaatcc 120 tgtatattcg tgtttttttt ttgcgattcc ctttctgtag gtgttctctt gtaacagtaa 180 aataacgccc acccaatttt tcgtactaag taccatacaa aaacgtcgac cgaaccccga 240 ataaagtccg acgagcatct cttcccaaga gttaatatgc aatatcacac cacggtgtat 300 tcacccgatc ctagtgtttt ttattttacc ctaactaaca acactggaac ggaagatgat 360 tctggtatca ctaccggttt caaaccagac aaattcagtt ctgttcactg ttacatcgac 420 aaccatatgg actatagttg taatccacca atggcagata tcacccgggt ttttcccaaa 480 aaggtccaga ataatcgttc gtgattgtaa ctaaataaga cactagtata cattttaaga 540 aacatttcat ttattactat actatggcta ttcgtattag ttggatttta ttttattaaa 600 actattacct atcatttata ttgcatcgac taaattacgg tgtatgatgc gactatctcg 660 tttcgtgctt catcaggcaa ctcgctcatt ggaatctgta ctttgtcagg ccatgtcatt 720 gtgctggtac aaccaatggt gttcatgcag tcatcgtaac catcacgaat atcgaatggc 780 acacgatgag gactccattc gttggcaaaa tgaagcacgt tgctacacca ttttgccacg 840 tttttgtagt atactttctt tccaacattt ccatcttcaa attctttgtt caatgcggcg 900 atttctcttt tcaaagtaat gcaattatcg ttgtaccgaa aagattcatt cggggaggtg 960 aacatcatga tacccatttc accctgttgc atcgtcacca tggtcagtcc acccgatttt 1020 aaatcgttga tggtggactg gtctaaggag taataagacg tattcatgat gagattactg 1080 tctgttttta tgttttgtcc taaatatcca gtcaaaacac ctttggtatg gattgctaca 1140 tgtgggattt gaccagggtg aagaacacaa gaccaggttg aagtacacag gatctacgct 1200 taccaccata ggtctgacgt cgacgcagta ctgtacacaa tgttagtagt gtgtggatcg 1260 ttactcctcc agttattatt ataacatctt tcaacggttt ttcaccgtgt gaacaaaaat 1320 aaccgactgg cgcgccatat tatcgtttgt gacacaacct ccacgatata tattgtaacc 1380 attcattcat cccgtactga aaaataaaaa acggttgaca tcataaaccc atcactccgt 1440 ttctttttga aaaccaaatt cgtaaaccac tccgatactg gctgttacga caactcatgg 1500 gtattttcca tggactgttt cctacttcct tcatcgtagt tctcctccta attccttttt 1560 ctcacaatct caaaaagaac aacattcgaa agcctccttt cgattgtctc atattccact 1620 aatcatataa ttcatttgag ttttcaacta ctgcgttttt caataaccat gtccatcctt 1680 cacgatgctg cagcatcagc atcatatcca cctcccgatc ttcatgattt ggtaaaggct 1740 atgaatgatg aagagcgaac taccgaattg gcgacattcg ataccgattt caaattattt 1800 tggaagagtg acaatcatct tcctttatca caacggttgg ataaatatag tcagcaacag 1860 ttcttggaca ttttaataga aaaatttcca acattggcta gtatggaagg aattgtacta 1920 gaagcgggtg tggagcaaat caacgaactt caaccggggg acatctcacc cttagccagc 1980 gacaacgacg attatttttt gaaattcgtg gctgttatag gagatttcac catcaaattc 2040 agcaaagagt tggacgagat gatatcacat ctagaagaaa aagaggtgtt gtcgaacgag 2100 atacttgcat cgagagatgt actaacaatc ttggttgaca gttttcctta cctatctgta 2160 gccccagcgg cacaccttga actgcaacgg ttattccttg ttcaaattcg acatcacttc 2220 ggaaccaaca tcctcgagtc tcgcggcggt ttgatctttc acctggttga aatttttacc 2280 gggtgtcatt gtcaccatgc atataacaac tccgacaaaa tgtttgacaa aggcatgacc 2340 cttttgaaaa acaatttatc gattggaatg acatttgttg cttgtggttc atttgtcgat 2400 atgttcgttg aaaaaggatt tttagaatta aacaagtcgg cagtggatgg agtcgaatgg 2460 attaaggttc ccgagggaat gcttggagaa gattcatccc ttattttacc gcctgtacct 2520 gctgtacccg ctgtacaaaa gcgaaagaag gttgcttttg ctgcgttaaa tcaaggtgat 2580 aatcaactag gtccgatttt tgccctatca caatctgatc atactcaaat tcaaccaggt 2640 cagaatttgg gaccgagacg aagtgaaaga attctgatat ctcaacagaa gaaacctcca 2700 acccaatcag tggaggtagc acatcactca tcagatgaag atgattcggt aagtaaatcg 2760 gacagtgttt cgatatacga cccgggtgat gatacacttg atccggatga accaatggta 2820 cagaatgatg gtgatgataa cattgaggct gcaggcatac cagacaacgg agaatggagt 2880 gaacagaatt atacggatga cggtttgtgg actgagaaag gattcagtgc gtcactgcgt 2940 gaatataggc caaagagaac ctggactaca cccgccgcat gtatggctgg ccaacaacga 3000 aaaaaactga aagcaaatgt ggaaactatg acgaacgtct tcgacagata cagtcagcgt 3060 cctggtatgg agtttccatc acaagaattt atacttctac aaattaccga catcaatggg 3120 gttggacaca aatacgaacc attatgccga agaaaaaaaa cagccgcgat ggcatatggt 3180 cgacccaagg ccttagatga gtttaaaagg tatttggaaa gtgaaaccaa cggagaaaat 3240 aattatgtca atcacacggc aaccgacata gatgaactca cccatttttg gagaacaaat 3300 gaagcaggaa aaactgttaa tgaagatgcg gacgatccgg acgatctgga agatgcggag 3360 gatctggtcg atttaaatgc cacgacgaac gcaccaactg ctaacagtga ggaaacagtc 3420 attgaactac aacattcgac ggggttggat gtcgctgggg ttgaatccga cgggcaacta 3480 aatttaaatg acaaaacgaa cgaaccacct gctcacggtg agaaaacagg tcaggccaac 3540 gcagaggatg ctgctaatga tgcggggttg aatgtcgcac agggcagaaa caatacatct 3600 gccgaaacag gtatcagcaa ctcaggaaat ttgaccgccg cgacgaacgg atcaactgtt 3660 gacgatgcgg aaacagcaac tagcggacaa caacattcga cggggttgaa agtcggtgag 3720 ggtgacaaca acacctccgc cgaatcgtcc gcggtagtag tgacgacggg tacttgcaag 3780 agcaacagcg acgaaatcaa agaaatatta caactattta atttaaatgc cacaacgaac 3840 ggatcaactg ttgacgatgc ggaaacagca actagcgaac aacaacattc gacggggtcg 3900 aatgtcgcaa ggggcggaaa caatcaacat ttgacggtga aagcgctatt gagcgcacgc 3960 aatagtgctc gcaccaccgg cactgtaaat ggtagcgcta gtggtaatag tagtgataat 4020 agaataggtg ctgataacaa caacaataat gaaaagaaga agagaaagaa gaaaaagaag 4080 aaaaaggagg aaaaggagga aaaggagaaa aaggagaaaa agaatagaaa ataaaatcaa 4140 tcaacgccta tgttgacatg agtacactga aacatcgttt acggatagga tcggaacagt 4200 aattattgga acatagcaat tgagttttat acaacctggt ggatgtcatc accaccaagc 4260 tcgctcccta tacaatcaac acggtcagaa ttcacatagg ttaaaagtta cttggtttat 4320 gcacaaacca accaagtatg cctattatac aactaactaa taaagaaagt agaactagat 4380 ttcattacaa atatagttct cttttattat ctttcttctg tgttgctttt ttgcttaatc 4440 tttttttctt ttttaccagt ggtttattca tcgtcgttca ttacatttac tcatcaatct 4500 caatcggtta ctgttatcac atttcaatca tcctcaattt ctcttttgtt tactcgtcgt 4560 cgtcgtcgtc ttcaatttca attacctcct ttactccttt ttcaatcttg atctgaactt 4620 cgtcgtgaat ctcgattacc tcgtttggtt tttttttggg atcgatgtag tatttgattt 4680 gacggggacg gcagatcgat tgcctggtgg aaacatccgc gggtaatcta gcttgtggag 4740 aagaaacagc acgcacggta ttggttcgac gacggtggag cttgaacccg gtgaaaccga 4800 caccgggtgg atttggccat tcctttttaa ttgcctctgt tccacaacga gggagaggaa 4860 cgcgcttgtt tatagggcca tatccgtcgt gaagaatgaa gtaaaaaaaa cgatatccaa 4920 ggaagcgacg ttcattggcc gagtacctgc tttcacctcg catagagtta acattacgaa 4980 ttatctctac tctattgatt tcccaagcac aaggatgaca attgcaatgg gtgcaatttt 5040 gcctggatga atttccaccg gggctgtaat agcacagcat tcgtgttggt tccttgaagt 5100 tggtaatacg gaatcgtttg cactgttcgt taatacgagc gtgtgtttct ttccatgttt 5160 cttgtctcga gtaacagagc gaccaggaat caactttctc aaattcgacc tgtggaacat 5220 ccccctgtgt agggactgtt ggtacccatc tgtgcagcct gttgcagatg gcatcaaatt 5280 ctcgatctaa actcatatac gattccattt cgtatatacc agacctgttc tgtgaaccag 5340 cgtggatttc agggtagtct tcaattttgg aaaacgattt gaggttgtta atattgtaca 5400 caaactcgtg gaggatagca atgcctccaa taaccattcg acgctcagtg aataaatcac 5460 tttccctctc tttgtaaatg gggttgcctc cgcccatgag agtgtggatt acttttacgc 5520 aatctgtgta acttgtccaa aacggtagat gtactcgaac tatcttcttg agcacctgga 5580 tggtattctg ttcaccatct acctcctgca aatgatattc agcagtgaaa gttaccgaac 5640 ggtcctcata cagcaaatac gacatcggtg gaacttgaag aggtttgtat tgagagacta 5700 tccagatcgg gtgttccaat ttatcgtcgt aaggcaggta tatagtttca tccgagaaat 5760 gagaggagac tgacaataaa aattgctcaa agccattagc aacagaaaac aacatgatac 5820 gtgttgtaat tggatactac tgttttgtcg aacgaagttg caaattatga tcatattgtt 5880 cgacttccac aatatttagg tcaagtatag tgctttttgt tactttagta cgctaaaata 5940 ataaaggata gaagtaggtc gtgttcaaaa tggagggaac tatagcattg ttgtatacaa 6000 ccgggggtgc taacgctttg atttgtcaaa cggaagatcc agccctgctc ttgatgctta 6060 cgaatgatgg ccggtgaaag tccctctctt tctggaaagc aaccgtgtta gatattgagt 6120 tgaaaacgga gggaaacatg tgatttgttg ccggttgtat gggcgttttt tgaatcgacc 6180 tggaagacta tcaacaggtt tgtatagccg gcgtgtatta gatctttcaa ctattcttat 6240 tacaatttca taggagataa ataccaagca cctgcacctg cacgtattca gaaaaggcgc 6300 gcaatttttc ggattttggg ggtaaccgag tactacctac cgatgggctc gtcgtaaccg 6360 ttaacgacaa aaaggatgta ttacagcaac agacaatttg aaagaatgac aatactgatt 6420 tgaatcttgt ccgtccagtt tgtttggcac gagtgtggtt tgtacagata cgtggttcga 6480 atagatgctt tgcacaacct ggtggttggt tgtcgaatca aatggttcac cgcgctcgtg 6540 attgattccg ctactgacag agaacagagt acagggaaac aatactatta cgtgaaacac 6600 gaatgttgtt ttagttgaag caatttattt gatccatggt gttttacaca taggttacag 6660 caattatttg atccatggtg ttttacaaat aggttgaact tggcacattg ggtgaatgat 6720 ggggggggat cgaatttttg taaacaagat tgacgatcgg aatgtaataa ttgcatggaa 6780 gagcataact gctcttctgg tcgaaaacac gatgtgttgt aaatgcaaga aaaagaacac 6840 aatggaattt tgtgccgaaa ctatcggaat tgctacaaag gtcagtctag catgtaagaa 6900 tgagatttgt gaaaaatata acaaatggtc cgtcaaggaa ccagccatgg ttaatttgga 6960 taagttggtt gacgacaagt gcgatccata cgatataaaa caatgtggta accgtgctac 7020 tcgacagtat caactcaatc tagacttgac tttaggtata atgatgattg gaggtggcgg 7080 acacgattac gcattggttg cctctcagct taatctatgt tgcagccagc gacaattgct 7140 agactcgttt acatccaatg aagaaactat ggctctgcac ataataaaaa tggcggaaga 7200 agtagttgaa agaaacttga acgacgaaaa aaaggaatca caattggtca acgatccaat 7260 cactgatgag gtgcacctcg ttgcagatac gattagaaaa agaaaggcgg gtgaaaataa 7320 tcctaggtca aatacacccg cgttggaagt agatgcagtt tcgttggacg aaaaccaaga 7380 agcgagacca agaccaaaga aaaaacgaaa cataggcgta tctatggatg ctggatggag 7440 aaagcgtagc tccggaagaa cttacgacgc acaacaagcc caattttttg cttttggagt 7500 agagacgaat aaaattctct actttgagca gatgtccacg cgttgtcgaa aatgtgaaca 7560 caagttggaa cacgatccga aattgtgctc gcataactat acaggttctg caaagggaat 7620 ggaacctcat gctgctttga aatgcatcca atcgattttt tccaagggtg atgcgtttgt 7680 aggcactatt gttactgatg acgattccag tatgagagcc cgactaaaac agaatggaag 7740 agaaaagata gaagcaggat tatgtcggaa ggaggaccta acgccaacca tccaattgag 7800 caacaaaaac gaccacggtg cacttgaact gaacatacct gaacctatct gtaaagcgga 7860 tgctaatcac agagtgcgtg gattcggtaa tgcagttcag aagttagtta acatgaggaa 7920 tggggaaagt gggggagtaa ctggtgttga ccgtgatcga ttgaaagtca attttgcgta 7980 cgctcgggct aagaatgtgg ataaggattt caatttattc tgtgctgcat tcgcaccagt 8040 tatagagcat cattttaata atcacgaact gtgcggtgag tggtgcgctg ctaaaaagct 8100 aactgataca aaaaaatcgg cggatcattt acattatcgt tgcaaagtca aaaacaaatt 8160 aatgtatgat aacttgaagg agatacacaa acgttatacc accgagcaac aactacgaga 8220 aatacaccat aaggtaaata caaatttgag tgaatcagca aactttgttg taacaaagtt 8280 tttgcccaaa cacaagaatt tcggaacgac aatagcggat aaaggtaggg tccatttctc 8340 ggtatgtatt attacagacg ggtacaaatc caccatggtt gaattgtata agagaatggg 8400 atttgaaaat aatctgctac gagtaaaggg atggacggat atagagaaaa aaaggaccta 8460 caaaaaacac tacatccaat tagacacgat aaaaaggaga agaatgatgc ggaaaaacat 8520 aaagaagagg gaaaatcgga aaaaggagga gaaatcacag gataaaggag aattttacaa 8580 acctggaatg ggattgaacg agggtacatc acgagcagcg ttgaatacaa ggaaaaaggc 8640 aaaaaaaaag gtaactaccg cagcaattga tgggaaaaaa aagaggacgt cttgtaagct 8700 ttgcaaaaga aaggatcatg tcaacaaatc taaacattgc ccgtatcata aaaattacgt 8760 tacgaaggag ggtgaggatc cggctttaat taaagccatg atattagagt acccaaatgg 8820 tatacctgat catacggtgg ttgaagagtt gaaacacgac gaagtaaatt tagttgacga 8880 accagtggaa agtgtaatag atgaaaatac cggtaagtgg ttgtgtgcaa aatgtgagat 8940 gggaggtatg ggaggaataa tgtgaggggg ttgaaattgg ccggtggtga aatttaccgt 9000 tgcgaccaac aaaagagtga tcctaccggg tacaatcgtg ttttctgcgt atgtaattat 9060 aattcaaatt ttcacaaaga aatccataaa actactgaag tgtacttctg cttttcttta 9120 tttctaacgg taataaggga cgttggaatc caacaatcca aacgttgagg aaaatgagct 9180 atgcgcgctt gaagattcgt gcgaagaaac agcggcaaca gcggacctaa cgaattcgca 9240 attccattgc tgtctactcg aaagggagat tttagagcaa gattcggagc cctatttgga 9300 tgacacccaa ggctcggatc acgacggttg aatgacgtac gggtagaact catttagcag 9360 aatataaccc ccaccggtat taagtgttta acgtaaaaat tgatgtagat aaacactttt 9420 gaactatttt cgcagaaaac ggctaaaaac cacctttttg agtttcagaa atatacagca 9480 cctagtacac gcgctgaaca ccaatcaaat tggacataga aagattcgtg ttgagcagac 9540 gaaggtcatc atatatagga cggtgcgtgt acgagaacac tgccagcaca ataggtctaa 9600 ccaaaatgga cacgaattgt ccattttcac cgtgctttta cgcgttgtag cgcgattttc 9660 ggcgcacgct gatgatacca cc 9682 // ID Gypsy11-I_VC repbase; DNA; PLN; 6116 BP. XX AC scaffold_87; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy11-VC; KW Gypsy11-LTR_VC; Gypsy11-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6116 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 120-120 (2008). XX DR Genome; scaffold_87; Positions 64855 58740. XX CC Positions [3463-3921] - Reverse transcriptase CC Positions [4948-5430] - Integrase core CC 'GCGGC' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 671..2050 FT /product="Gypsy11-I_VC_2p" FT /translation="MPPCRLVLRSPQQNVACIITRTEAMDHAVHPTGAAPR FT DDFNKLLLDKLEQMSKRIEGIEAHIQAQAAAPPPPNPPEPIIPAAEGLNVQ FT PTAAEPPTNTVPVRPAEVNDQPAQVPEPAPPPIVAPATPAANCAPPAACKP FT ATAQAGHVSGIVGYKDVQSISALNQQPHQQNANHQSLKNFRQPPCFTGVPS FT TAITKPEIWFDTTVDYMTQSGSDPIMGMRYYVTGKAAEWYHDLFARKGSTL FT TIQSMRDDFVLLFGDVHRCTPHHVRTQLLAGAHAMKPGESIPNYVQRFREI FT TRGDPNMSQIDLCTWLIHGMPPQLRRECATDANGNNWFAFDALVTYAQGAQ FT TRHEAGKVQTARLNFLGTNDAPAHPRQNGGRGNHTQRGGSSSCADHHHHGG FT RYGGRGGGRGGAYGGRGRGGSTEMPPWVKEMAKEKNICCHCGEPFGKGHHC FT GKRPRYNEDRKKADA" FT CDS 3463..6057 FT /product="Gypsy11-I_VC_1p" FT /translation="MCLDFRALNKITVKNRYPLPNITDLLNKLQGASIFSS FT LDLQSGYHQIRITEEDIPKTSFITPFGTFQYKVLCFGLTNAPATFQKVMNT FT VLKKHIDAGYCVVYLDDILIFSKDPSSHLEHMRAVLESLKGARFRAKREKC FT ELNKPEVNFLGHIVGREGLKVDPRKIEAVKNYPVPKDMTALHGFLGLANYF FT RKFIQGYSSLANPLTALTGSKRLTEWTDTHQQAFDGIKNALANAPVLHLPD FT FTKQFEVVTDASIYGTGGVLLQNGHPVAYTSKKFTPAEINYTTTEQELLGT FT INALQEWRLYLETAQDTFTLVTDHQPNIWFETKKDLSRRQAWWQEFLCRFH FT YTWQYRPGRKNVADPLSRIHTPPTAVAALRYIGMPTDGSPTEPTLADRLKA FT VMPDKPDADWGTASFTDGMWFKGNKIIVPNDPQLRKDILHAYHDASLAGHR FT GVAKTLHTVAERFWWPGMYSAVERYVHECPQCQRNKPDNQKPAGKLQPLPT FT PMGPWQVVSCDFITSLPQTPSGNTAICVFVDKFSKMVSLVPTTDQLTTIGF FT AKMLVNHIICKHGRITALLTDHDPRFTAQAMRNAAKQLGVKQLMSSSFHPQ FT TDGQTERANRVLQEVLRNYVGPDLTDWEDWLPKAEFAINNSKNESTGQTPF FT YTVYGRTMSLPHDHDLPLQQSKYPAADEIADSLTQWVTLATKCLDAAKQRQ FT AKYANKARRDAQFEVGQHVLLSTKNFTFRAPNTKGLGKFMPRYIGPFPITA FT KVGEAAVRLQLPAHLRMHDVFHVSKIKAYKAGSNAPPPPAIPAAEGEPLWY FT VDEIHAHRQSRSRRRITTEYLVRWHKLGPEYDSWESAKDCNQGCPEAIRAY FT HGKLYAKGVPLP" XX SQ Sequence 6116 BP; 1575 A; 1908 C; 1521 G; 1112 T; 0 other; aatttggtat cttagaccaa ccggtcaaaa ggacctcgga gtcgagtact ccaccgcttc 60 cgcacgcaca ttccaacttt acaaacattt tttatctgac tcacatgacg agcccagcaa 120 ggaaccccct gcgcgcccag tcggcggagg ccgaccatga gcgctaccag ctgcgccagg 180 tgagcccctc tagggccaag aaactggtac aaaaggtcca ggaaatgtat gagaagtacg 240 cgagacgtgc tcagcgtagg ggcatcacac cgccgtcgca catgtttgac aaagtcagac 300 agttttgtga cgagcaagac tatcgctctg cactaggctt cctaatggaa gctaacgagg 360 aactctcttg tgtgcagaag agccgcgaac tgtgggaacg actagcgctg cggcgcatga 420 cgccgacaaa aacggagcgc aagacccaac aggtcccgga ccatcgcgcc cacatcccgc 480 gcagccaacg gctgccaccg gggagccgac cagggtgacc ttaccctcca ccgcgctcca 540 gccgcaacac ggcacacgac agggtgagtt acacaaagag cgtgagcgta ataacaccac 600 tgtggctaac cccgtcccgc ctgagggagg gttgccacca ctttcccacc cacaccgccc 660 aattggcgca atgccaccat gtagattggt gcttaggtcc ccgcaacaaa atgttgcatg 720 tattatcacg cgaactgaag ctatggacca tgcggtacac ccaacaggtg cagccccacg 780 tgacgatttt aacaagctgc tgctggacaa actcgagcaa atgtcgaaaa gaatagaagg 840 catagaggca cacattcagg cccaagccgc cgcaccaccg cctcctaatc cgcccgaacc 900 tatcatacca gcagcagaag gcctcaacgt gcagccaacg gctgcagaac caccgacaaa 960 cactgtacca gtgcggccgg cggaggtcaa cgaccaaccc gcccaggtgc ccgaaccagc 1020 gccaccgccg atcgtcgccc ctgccacgcc ggctgccaac tgtgcgccgc cggccgcgtg 1080 caagccagct actgcccaag ctggccacgt aagtgggatt gtgggttaca aggatgtaca 1140 atccattagt gcgctaaatc agcagccaca ccagcaaaat gctaaccacc aaagtcttaa 1200 gaactttagg cagcctcctt gcttcacggg agtgcccagt accgcgataa ccaaacctga 1260 aatctggttc gatactaccg ttgattacat gacgcaatcg ggcagcgatc ccataatggg 1320 catgcgttat tatgttacgg gcaaagctgc agagtggtac cacgacctat tcgcacgcaa 1380 aggctccacg ctcactattc agagcatgcg tgacgacttt gtgttgcttt tcggtgacgt 1440 gcaccgttgc acccctcacc atgtacgaac gcaactactg gccggtgcac acgcaatgaa 1500 acccggcgag tccataccaa attacgtgca gcggttccgt gaaattacgc gtggcgaccc 1560 taacatgtct caaattgact tgtgcacttg gcttattcac ggtatgccgc cgcaactgcg 1620 gcgggaatgc gccacggatg ccaacggcaa taactggttt gcatttgacg ctttagttac 1680 ctatgcccaa ggtgcacaaa cgcgccacga ggcaggcaag gtgcaaacag cgcgacttaa 1740 cttcttaggc actaacgatg cccccgccca cccccgacag aatggcggcc gcggaaacca 1800 cacccaacgg ggtggatcta gcagctgcgc cgaccaccac caccatggtg gccgctacgg 1860 aggccgaggt ggtggtcgcg gtggcgccta tggcggccgc ggccgaggcg gcagcacgga 1920 aatgccgccg tgggttaagg agatggctaa ggagaaaaat atctgctgtc attgtggaga 1980 gccctttggc aagggccacc actgtggcaa acggccgcgt tacaatgagg accgcaaaaa 2040 agcggacgcc taggaaattg cccacgctgt agcctcaggc agctcgtgtg gggaaccgat 2100 ggacatagag gaactaaccc ggaatccacc aacggtggac tgcagcaact gtgtgcttca 2160 ctcagtgttt ttgcgtctgc agaaggcctc gggtcgggtg ttcatgatcg atgcatcttg 2220 taacgtacga agcgacaatt ccctctgtcc taattttgcc tgtcccgact cgttcacttt 2280 gcacgatctt agtggacagc atatctggtg caacgcgcca gccgattgcg cgattccttg 2340 gctgaacaac tacagcactt taaaacagcg cgctccggac acaactagtg cggttatgtt 2400 ggtgcccaag tgcgcccacc tagaaacgga atttcagaca cgcggttgga ccttactcaa 2460 agagtttaca agtaactccc gtatcttctc cgaacctaaa cccggaggtg gtcgcaccag 2520 gtcccaaaac tgcagtggcg agtttcaagc atggctcgac ccctgccagg aaaagtctaa 2580 gtgttctgca ctagaacctc tgaccgaaaa caccgcgctg ctactaccgt gcaactttac 2640 tagcacaaaa gctgtcgcct tagtcgactc aggtgctttg cacgttttcg tatccgccgc 2700 acttgtgcaa aaactgggct tacagcccct cactagccac gtagctactt gagtgctagg 2760 cgacggcgca aatagcgtct gcctccaagg tcaggtgcat atgtcgctcc gtatccaagg 2820 attccgctgc gaaatcgtag cgcaagttat ccctaagcta gccgatggca tcgacctaat 2880 tctcggcagc cgttggatgc gagagcacag tgcattacta gactttggac agggcacctg 2940 tatagtgacg cgccatggcc gctcatatcg gctacagagc ctcaacaggg tgttgcggtc 3000 atgaattacg tgacggcggt cttacacgcg gccacttcac ctagcgcgaa cctggtgtct 3060 ctaaagcaga ttaaaaaact gcagaaacaa ggagcgtctt gttacgctgc cttcataacc 3120 agtgacgata tcgcccagct aaacgctatg gacgccacaa cggcgacccc gtccgaccct 3180 accctggtgt caccagataa actggaagaa ctgctggagg aatataagga ggtttttgag 3240 cccttaacgg gcctcgggcc ggatctcggc actggccaca caatcgagct agaacctggc 3300 aaaaagccac cgtactcctg accgtaccga ctttcccagt tggaacaaac ggagttgaaa 3360 aagcagctcg cagacttact ggccaaaggc ttcatcgagg aatcaaaatc accattcggc 3420 gcgcccgtac tcttcgcaca aaagaaggac ggctcgctgc gcatgtgcct cgacttccgc 3480 gccctcaaca aaatcaccgt aaaaaaccgg tatccacttc caaacatcac cgacctcctc 3540 aacaaacttc agggtgcgag catattctcg tccctcgacc tacaaagcgg ctatcatcaa 3600 atccgcatca cggaggagga catccccaaa accagcttca taacaccctt cgggacgttc 3660 cagtacaaag tactgtgctt cgggttgacg aacgcgccgg cgaccttcca aaaggtcatg 3720 aacaccgtgc ttaaaaaaca tatcgacgcg ggttattgtg ttgtttacct ggacgatatc 3780 ctcatcttca gcaaagatcc atcaagtcac ctcgaacata tgcgcgcggt cctcgaatcc 3840 ctcaaagggg cgcgtttccg tgcaaaacgt gagaagtgcg agctgaacaa gcccgaagta 3900 aacttcttag gccacatcgt cggccgcgag ggacttaagg tggatccccg taaaatcgag 3960 gccgttaaga actatcccgt cccaaaagac atgacggcgc tgcacggttt cctaggtctt 4020 gcgaactact tccgcaagtt catccagggg tactcatcgc tagcaaaccc acttacggcc 4080 ctcaccggca gcaaaaggct gaccgaatgg acggacacgc accaacaggc cttcgacggc 4140 attaaaaacg ccctcgccaa cgccccggtg ctacatcttc ccgattttac taaacagttc 4200 gaagtcgtaa ccgatgcaag catctacggc acaggcggcg tgctgctgca gaacggacac 4260 cccgtcgcat acaccagcaa aaagttcacg ccagccgaaa tcaactacac caccacagag 4320 caagagctcc tgggtacgat taatgcccta caagagtggc gactgtacct tgaaaccgca 4380 caagacacct tcacgctggt caccgaccac caaccaaaca tttggtttga aaccaaaaag 4440 gacctgtcac gacgccaagc gtggtggcaa gagtttctgt gccgcttcca ctacacgtgg 4500 cagtaccggc cgggacgcaa gaacgttgcc gatcccctct cccgcatcca tacacctccc 4560 actgcagtcg cagccttgag gtatatcggc atgcctaccg acgggtctcc aacagaacct 4620 accctggcgg accgcctaaa ggcggtaatg ccggacaaac cggacgccga ctggggcacc 4680 gcctcgttca ccgacggcat gtggttcaaa ggcaacaaaa ttatcgtgcc caatgacccg 4740 caactgcgaa aagacatctt acatgcctac cacgatgcat cgcttgccgg acatcgtggc 4800 gtggctaaga cactgcacac agttgctgaa cgcttctggt ggcctggcat gtacagtgcc 4860 gtcgagcgct acgtgcacga atgcccgcag tgccaacgca acaaacccga taatcaaaag 4920 ccagcaggca aactacaacc cctgcccacc ccaatgggcc cgtggcaggt ggtctcctgc 4980 gactttatca ccagcctacc gcagacccct tccggcaaca cagccatttg cgttttcgta 5040 gacaagttct cgaaaatggt ctcgctggtg cccacaacgg accaactaac caccatcggc 5100 ttcgcaaaga tgctggtaaa ccacatcatc tgcaaacatg gtcgaatcac cgcgctcctc 5160 acggatcatg acccacggtt cacggcacaa gccatgcgca atgcagccaa gcaactgggc 5220 gtaaaacagc tcatgtcctc gtcattccac ccgcaaacag atggtcaaac cgagcgcgcg 5280 aaccgcgtgc tgcaggaggt cctgcgtaac tacgtgggtc ctgacctcac ggactgggaa 5340 gactggttgc caaaggcaga attcgccatc aacaacagca agaacgagtc caccggacaa 5400 acaccgttct acactgtcta cggacgcacc atgtcactac cacacgacca cgacttgcca 5460 ctgcagcagt ccaaatatcc ggcggcagac gaaatcgccg acagcctcac ccaatgggtt 5520 acactggcca cgaagtgcct cgacgccgca aagcagcgcc aagccaaata cgcgaacaaa 5580 gctcgccgtg acgcccagtt tgaggttgga cagcacgtcc tgctgagcac caagaacttc 5640 acgttccggg cacccaacac gaaaggcctt ggcaagttca tgccacgcta catcggcccc 5700 ttccccatca ctgccaaggt gggcgaagcc gcggttcgac tacaacttcc agcgcacttg 5760 cgcatgcacg acgtattcca cgtctctaaa ataaaagcct acaaggctgg cagcaacgcg 5820 ccacccccac ctgcgattcc cgcagctgag ggcgaaccgt tgtggtacgt ggacgagatc 5880 cacgcccacc ggcagtctcg cagcaggcgc cgcatcacca cggagtacct cgtcaggtgg 5940 cacaaactgg gccctgagta cgactcctgg gagtccgcaa aggactgcaa tcaaggatgc 6000 ccagaagcaa tccgcgcata tcacgggaaa ctgtacgcaa aaggcgtacc tctaccctaa 6060 acatccacct cacccaaggc gccccgagga cgggttcgca ttcaagaggg ggggaa 6116 // ID Copia-2-I_FCy repbase; DNA; PLN; 7986 BP. XX AC . XX DT 22-JAN-2010 (Rel. 15.04, Created) DT 22-JAN-2010 (Rel. 15.04, Last updated, Version 1) XX DE Internal portion of a Copia-2_FCy LTR retrotransposon - DE consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_FCy; KW Copia-2-LTR_FCy; Copia-2-I_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-7986 RA Kapitonov V.V. and Jurka J.; RT "Copia-2_FCy family of LTR retrotransposons from diatom."; RL Repbase Reports 10(4), 548-548 (2010). XX DR [1] (Consensus) XX CC The genome contains several proviral copies of Copia-2_FCy that CC are >98% identical to the consensus sequence. Copia-2_FCy is CC characterized by 6-bp TSDs. A 5'-terminus of its internal portion CC is not complementary to known tRNAs, and it does not form a CC self-priming palindrome. This family belongs to an ancient group CC of copia LTR retrotransposons, which includes also Copia6_TP, CC Copia7_TP and Copia8_TP. The consensus sequence was derived from CC sequence data produced by the US Department of Energy Joint CC Genome Institute http://www.jgi.doe.gov/ in collaboration with CC the user community. XX FH Key Location/Qualifiers FT CDS 193..7983 FT /product="Copia-2-I_FCy_1p" FT /note="Contains the integrase and RT domains." FT /translation="MSQQEEQEDTNETLPTEGSDNDSRSTYSEATSGNQAP FT EALGEGTRSPPFWADANHRTELTSLGYNVHTPNPRRTTRSRAPTIRYTPSG FT DTNQEEADIENNLLNIQVEVNTAREEDESTASAYSGLRPGDPLYVSPPRLP FT LPDSSSTDTSSVPERPSPPEPIEEVIDTSFTLGTFPTVHDPYVKGYEITAR FT NPVPINVPLPSLPETPPLPSLPELPLTERLDTLLTEICNFRVRNLTTRRAF FT ATNITPSNTSSPKMATTPFDAQLEVLLVNMLKCTTATNPIYLVLDQNHIHT FT FEQFRSIEIDDLPTFKYEKPTTAGTEETLHITPLKEVQNCVHFCCYLETAA FT AVALAGGVIDCDDPSTWDYADMLNWKRAITGKATYLRTLVIPATTTTGAPG FT SPTMIVSGPITLKDDEAALISWNRKPRDPVKYPTINNDAFYQDWKLNFKRQ FT IIQDTLERVLDPNFNPDLRSSTCSVRSGPDAELARLQVNYFAQILCVVLKN FT PEGLGLLMVRPDDPLYVWRNHEDHQNDSDAAQIASTTLMKKLIALKFSDFN FT TRHEFLTSFQDTSRRYDQLATNVMDDSVKITLLQAAVMADSALINSWQSCQ FT DSKRGSALAGSSRPVTYHEYITFLIKSAKNHDLYTPYKKPSRQAHQATSES FT FYNEEMNVDYGDTDDGIDEFLAHMSVSNEPMTEHAESTMQAYAAFQKNRRP FT PRERDPDTEIPKPIFEKCPRDLRIAWSKAPNDIKKQILKIKNHPTKQGAKK FT NSELGVYISDFEGYDSDASGQSEHTYVYDADDADDTSVIEATDLTANAARR FT RQPNQGILKKKELPRKTELPLADPRRFMANKTTPVIGKDGKVVGHIAYTAA FT MAKINHRFDQVDCHLPNTSKDNYVVSVNATKFFNEPLALMDGGANGGIGGR FT DMRLMSYNADGRRVNIGIAGDHQMTGKRLGTFCSVIVTNRGKILAIFHQYA FT HVPEQEKSIHSKCQFQAHNNLVGDTATAYGGPQRIQTADGYQLPLSIRSGL FT PYIRQTYPTNDEIKELTHVQFTSPAEWNPNLNDDSRTPEEMLKQFPPMPRS FT AINEFYDQEGNINYDYLSKQEHRPIRATVQTVEIEHDDDDSVGSMPGLQCR FT AQEEDSSGDEEDSSSDDEPVVNKFKQPTTIVWNDPIDDSNGEKIECPRLRK FT SKLKRRIRIKEKRLKAAASKQELIDKKPSAVTANDLPIPIIDNMVNDNESP FT TMVDGIEFFSTDPHPLQPNIIDDVIEEMKMDDLLFYDSVDKPQDSTVFVDT FT KSDTSYLDDLSTFRPTEHEYWEDFLMDESTQRLIYQGRLDYYEQYDINATD FT IANVMNPLTPRYSVPTVIDYESKRKYFAHLPASVVKATFKHTTQNMKLPPA FT SYLHKMFKSPNPSANLKRRDEDDATDMIYSDTPACNGGEKCAHIFVGRKSK FT LTDAYKVKHQNAEDFLLCFQDRVRQRGCPTGLVADNAPMYRGWKNAVYLRD FT ICISLWQCESKYQHQNYAENRWQTVKRYTNRVMDRSGCPPYVWFLALSYVI FT FCLNNCVDPNIGEGNKSPLQIATFQMTDISPLLYFYFWEPVYYLVDESEQH FT FPSKSKEMRGRWVGISEHIGNKMTYKIISDTTGNEICRSAIRTARDNTMKN FT LREDPVTVDKDLFNVENILSPAEDIANNKLKEVTSGNTFNDFDESAISKDI FT EIQLQAELDARFNDSNEQQTGHFKTASPKRAPPTGPQRHVKQKRLSDLNPL FT DKTKDKGLRRSSRHKPLQNLNVKGVTTLLTQVNNTDINHPTNPQPSTATRQ FT QVLKQRDTSIKEQLDSFVYLRENGENEYLLGKEFEFPLKDENGNAILGDDG FT KPLVAIAPPPSDLVGRVFLTKPDERGEVNRARVVELIKDFEGKVEKDMNLI FT KFKLNYDHSSQEDIMSYNEILDYIEREQNNEDGHHWKFRTILGHVHTPVGH FT KDRMGSDYNVRTAWETGAISVEPLDFLAKDIPVDLAIYAKKFDLLELEGWK FT RFKRIANRDKHIRRLVKQAKLRSFRVTPKYKYGFSIPRNYKEALEFDERNG FT NHKWQEANVLEHAQLTDYAVFKNKGEFHDAKIPEGYRKIKVHTIFDVKHDG FT RHKARVVANGNLTDTPLESVYSGVVSLRGLRTCIFLGELNGMTPWATDIGN FT AYLEAKTTEKVCIKAGPEFGELQGNLLIIDKALYGLRLSGKAFNILLSDCL FT RDLGFYPSKAESSIFMRKCPTRDVYEYVATYVDDLCIVMENPREFLNQLSS FT APYNFKLKGSGEVNFHLGCGFERDSDGVLCMDPSRYIDKMEDAYKQYFKEL FT PNQKHRSPLVKGDHPELDVTEFLDQDGIEIYQSLIGAMQWAISIGRWDIQS FT AVMSLSSFRAQPRKGHLERIKRIYGFLCKFRHFKLRFRVDEPDYSGIPPMP FT PYDWSHSVYGNPTEDIPKDAPTPLGKRIVLTHYFDANLMHDVLSGKAVTGV FT VHFYNKTPVDWYSKKQSTTETATYGSEFLACRTCFEQIIDHRQYLRYLGVP FT VGDEDYAWGDNDAMINSATIPDAKLHKRHNILSFHFVRSLIASGFINLQHI FT KSESNIADILTKHWGYQSTYELIRPIFHFGGNTAALYFDDTLEVDRHITES FT ELAEIVTTNG" XX SQ Sequence 7986 BP; 2655 A; 1753 C; 1566 G; 2012 T; 0 other; agattaacag tcgcacggtt tatcctataa acgtgctgat caactttctt tttagttcat 60 ctgaacgaca aaaggaccgg agatccaatt atatttaatt gtaattattg aattaacgat 120 ctcgaaagaa gtctaaatta caataacctc aagtcttaac aaataagaac tagagaagcc 180 attcaactgt gaatgagcca gcaagaagaa caagaggata ctaacgaaac actacctact 240 gaaggaagtg ataacgatag tagatccact tattccgaag caacaagtgg aaaccaagcg 300 cccgaagcgt taggtgaagg aactcgtagt cccccttttt gggcagacgc taaccatcgg 360 actgaactaa cctctctagg ttataacgtt cacacaccga acccgcgcag aactactcgt 420 tcaagagctc cgactattag atatacacca tctggtgata ctaatcaaga ggaagccgat 480 atagaaaata atcttttaaa tatccaggta gaagtaaaca cagctagaga agaagacgaa 540 agcacagcaa gcgcttatag cggcttacgc cccggcgatc cactctacgt ctctccgcct 600 agactacctc taccagatag ttcaagtaca gatacatcta gtgttccgga acgtcccagt 660 ccacctgaac ctattgaaga agtcattgat acgtctttta cgctcggaac atttccaaca 720 gtacacgatc cttacgtaaa aggttacgaa attactgcca gaaatccagt tcctattaac 780 gtacctctac cttctcttcc agagactcca cctttacctt ctcttccaga gttaccgtta 840 acagaacgcc ttgatacatt gctaaccgag atctgcaatt tcagagtccg taacttaaca 900 acccgacgtg catttgctac taacattacg cctagtaata ctagctcacc caagatggcg 960 accactcctt tcgatgcgca actcgaagtc ctcttggtga atatgttgaa atgtacgacg 1020 gcaacaaatc cgatatacct tgtgttagat cagaaccaca tccacacatt tgaacaattt 1080 cgttctattg aaattgatga tttgccaacg tttaaatacg aaaagccaac cactgcaggc 1140 accgaagaga ctctccatat aacaccactc aaggaagtac aaaactgtgt acacttttgt 1200 tgttatctag agaccgctgc tgccgttgct cttgctggtg gagtcatcga ttgtgacgat 1260 ccgtctacat gggattatgc ggatatgtta aactggaaac gtgcaataac tggtaaagct 1320 acatatcttc gaacgttagt tataccggca acgactacaa caggtgctcc tggctcacca 1380 acaatgatag tttcaggccc tatcacttta aaagatgatg aagccgcact tatcagttgg 1440 aatcgaaagc ctcgagatcc tgtaaaatac ccgaccatca acaacgatgc tttctatcaa 1500 gattggaaac taaattttaa gagacaaatt atccaagata cattggaaag agtattggat 1560 cctaatttca atcccgatct tcgatcatca acatgctcag tacgtagtgg acccgatgca 1620 gaactagcaa gacttcaagt taattacttc gctcaaatct tgtgtgtagt tcttaagaac 1680 cccgaaggtc taggtcttct tatggtccgt ccagacgatc cgttatatgt atggagaaat 1740 cacgaagatc atcagaatga ctcagatgca gctcagatag cttcaaccac actgatgaag 1800 aaattaattg cattgaaatt cagcgatttc aacacaagac atgaatttct tacttcattt 1860 caagatacct ccagacggta cgatcaacta gctactaacg tcatggatga ttcggtaaag 1920 ataacattat tgcaagcagc agtcatggcc gattccgcgt taattaactc ctggcaatca 1980 tgtcaagata gtaaacgagg aagcgcttta gctggatcat ctagacctgt tacgtatcat 2040 gagtacatca cgtttcttat caaatcagcc aagaatcatg atctatatac gccatacaag 2100 aaaccatccc gtcaagctca tcaagctaca tcagaatcat tttacaatga agaaatgaat 2160 gtagactatg gcgacactga cgatggcatt gacgagttct tagctcatat gtccgtatcc 2220 aacgaaccta tgaccgaaca cgctgaaagt acaatgcaag cctatgcagc attccagaag 2280 aaccgtcgtc ctcctcgtga gagagaccct gacactgaaa taccgaaacc aatcttcgaa 2340 aagtgtccaa gagatttacg gattgcatgg agtaaggcac ccaatgatat taagaaacag 2400 attcttaaaa tcaaaaacca tcccactaag caaggtgcta agaaaaatag tgagttaggt 2460 gtctacatta gcgattttga aggatatgac tccgacgcat ccggccaatc agagcatacc 2520 tacgtatacg acgctgatga tgctgacgat acatctgtca tagaagcaac tgatttgacg 2580 gcaaatgcag caagacgaag acagcccaat caaggtatac tcaagaagaa ggaattacca 2640 aggaagactg agctgccttt agccgatcca cgtcgattca tggccaacaa aaccacacca 2700 gtaataggta aagatggtaa agttgttggt catatcgcat atacggcagc tatggctaaa 2760 atcaatcatc gttttgatca agtcgattgt catctaccaa atacttccaa agacaactac 2820 gtcgtctccg ttaatgcaac gaaattcttt aatgaaccac tcgcattaat ggatggcgga 2880 gctaatggtg gaattggagg cagagatatg agactcatgt cttacaatgc tgacggacga 2940 cgtgtcaata taggtattgc aggtgatcat caaatgactg gcaagagact tggaacgttt 3000 tgttctgtaa ttgttacaaa cagaggcaag attctagcca tatttcatca atatgctcat 3060 gtacctgaac aagaaaaatc gatccattcg aaatgtcagt tccaagcgca taataatctc 3120 gttggagata cagcgacagc ctatggcgga ccacaacgta ttcaaactgc agacggatat 3180 cagttacctt tatctatacg ctctggatta ccgtacattc gccaaacgta tcctaccaat 3240 gatgagatta aagagcttac acatgtacag tttacttcac ctgcggaatg gaatcctaat 3300 ctgaatgacg atagccgtac acctgaagaa atgctcaagc aatttcctcc tatgccacgt 3360 tccgctatca acgagttcta cgatcaagaa ggtaatatta attacgacta tctttctaaa 3420 caagaacata gaccaatacg tgcaacagtt caaaccgttg aaattgaaca tgacgatgat 3480 gacagtgttg gatctatgcc tggtttacaa tgtcgagctc aagaagaaga ttcctcaggt 3540 gatgaagaag attcctcaag tgatgatgaa cctgtagtta ataaattcaa gcaaccaact 3600 acaattgtat ggaacgatcc aatcgatgac tccaatgggg agaaaattga atgtcctcga 3660 cttagaaaaa gtaagctcaa acgccgtatc cgaatcaaag agaaacgact caaagctgca 3720 gcctctaaac aagaactgat tgataagaaa ccatctgctg ttacagctaa tgatttacca 3780 atcccaatta ttgataatat ggtcaatgat aacgaatccc ctacaatggt agacggcatc 3840 gagttctttt caacggatcc tcatccactt caacctaata tcatcgacga cgttattgaa 3900 gaaatgaaga tggacgatct actattctac gattcagtag ataaacccca ggactccaca 3960 gtattcgtag atacaaaatc agacacctcg tatcttgatg acttatctac cttcagaccg 4020 actgaacacg aatactggga agacttttta atggatgaat ctactcaacg tctaatctat 4080 caaggaagac tcgattatta tgaacaatat gacattaatg ctaccgacat tgctaatgta 4140 atgaatcctc ttacaccaag atattctgta cccacggtca tcgattatga atccaaaagg 4200 aagtactttg cacatctacc tgcttctgtt gttaaagcta ccttcaagca tacaactcaa 4260 aatatgaaac tacccccagc ctcatatctg cacaagatgt tcaaatcacc taatccttct 4320 gcgaatctca aacgccgtga tgaagacgat gccaccgaca tgatctattc agatactcct 4380 gcatgcaacg gtggtgagaa atgtgcacat atcttcgtgg gacgaaaatc gaaactcacc 4440 gatgcatata aagtcaaaca tcagaatgct gaagactttc tactttgctt ccaagatcgt 4500 gtccgtcaaa gaggatgtcc cactggacta gtagcagata atgctcctat gtatcgagga 4560 tggaaaaacg cagtgtacct tcgagacatt tgtatttcat tatggcaatg cgaatccaaa 4620 tatcagcacc aaaactatgc tgaaaatcga tggcaaactg tcaaacggta cacaaaccga 4680 gtaatggacc gcagcggatg ccctccctac gtttggtttc tagcattatc ttatgttata 4740 ttctgcctca acaattgtgt tgatccaaac atcggagagg gaaacaagag cccactacaa 4800 atcgcaacat ttcaaatgac tgatattagc cctctgctat acttttattt ttgggaacct 4860 gtttattatc tcgttgatga atcagaacag catttcccaa gtaagtccaa agaaatgaga 4920 ggtcgatggg taggaatctc cgaacatatc ggtaacaaga tgacctacaa aatcatttcc 4980 gatacaactg gaaacgaaat ttgtcgctca gccatacgta ctgcacggga caatacgatg 5040 aagaacctac gcgaagatcc tgtcacggta gacaaagatc tattcaatgt tgaaaatatc 5100 ctttctccgg cagaagatat tgctaacaat aagttaaaag aagtaacctc gggaaatact 5160 tttaacgatt ttgatgaatc agcaatatcc aaggatatcg aaattcaact ccaggcagaa 5220 ttagatgcaa gatttaacga ctcgaatgaa cagcagactg gtcattttaa aacggcgtcg 5280 ccaaaacgtg cacctcctac tggaccacaa cgtcatgtaa aacagaagcg tttaagcgac 5340 ttaaatcctc tggataaaac taaggataaa ggtttacgac gtagttcacg acataaaccc 5400 cttcaaaact tgaacgttaa aggagttacc acactattga cccaagtcaa taatactgat 5460 atcaaccatc ccaccaaccc acagccgtct accgcaactc gtcaacaagt cctcaagcaa 5520 cgtgacacat ctatcaagga acagctagat tcatttgtct atcttcgaga aaatggggag 5580 aatgaatatc ttttgggaaa agaatttgag tttcctctta aagacgaaaa tggcaacgcg 5640 atactcggag acgacggcaa accgttggta gcaatagcgc ccccaccaag tgatctagta 5700 ggaagagttt tcctaaccaa acccgacgag agaggtgaag ttaatagagc acgagttgta 5760 gaacttatca aagactttga aggcaaagtt gaaaaggata tgaatctaat caagttcaag 5820 ctaaactatg atcacagttc ccaagaagac atcatgtcgt acaacgaaat tctggactac 5880 atcgaaagag aacagaacaa tgaagacgga catcattgga aatttcgtac tatcttagga 5940 cacgtacata ctcctgtggg acacaaggat agaatgggga gtgactacaa cgtcagaaca 6000 gcttgggaaa cgggagcaat ttcggttgaa ccattggact tccttgctaa ggacattcct 6060 gttgatcttg ctatctatgc caagaaattt gacctactcg aattggaagg atggaaacgc 6120 tttaaaagaa ttgctaaccg agataagcat attcgacgac ttgtgaaaca agccaagcta 6180 cgatccttcc gtgttactcc taagtacaag tatggattct ctataccgcg taactacaag 6240 gaagcccttg agtttgacga aaggaacggt aatcataaat ggcaagaagc aaatgtattg 6300 gaacatgcac aattaacgga ttatgcagta ttcaagaaca agggagaatt ccatgatgca 6360 aagataccag aaggttatcg caagatcaaa gttcatacta tctttgatgt gaaacacgat 6420 ggcaggcata aagctcgagt tgtagctaat ggtaacctaa cggatacgcc actcgaatct 6480 gtttactcag gtgttgtttc attacgcgga ttacgtacat gcatattctt aggagaactt 6540 aacggcatga ccccatgggc tactgatatt ggaaatgctt atcttgaagc aaagaccacc 6600 gaaaaggtat gcatcaaagc agggccagaa tttggggagc tacaaggaaa ccttcttatc 6660 atcgataagg ctctttacgg attaagactt agcggaaaag cattcaacat tttgctatct 6720 gattgtctac gcgacctagg attctaccca tccaaagcag aatcaagtat tttcatgaga 6780 aaatgtccta caagagacgt gtacgaatat gtggccacat atgttgatga cctatgcatt 6840 gttatggaga atcctaggga gttcctaaac cagctgtcgt cagcaccgta caacttcaaa 6900 ctgaaaggtt caggagaagt taacttccac ttaggttgtg gatttgagag agactctgat 6960 ggagtattat gtatggaccc aagccggtac atagacaaga tggaagatgc ctacaagcaa 7020 tatttcaagg aattgcctaa ccagaagcac agatcaccgc tagtgaaggg agaccatcca 7080 gaacttgatg taaccgagtt tcttgaccaa gacggtattg aaatatatca atcattaata 7140 ggagctatgc aatgggcaat ctctattgga cgatgggata tacaatccgc agtaatgagc 7200 ttatcaagct ttagagcgca accacgaaag ggacatcttg aaagaatcaa gcgtatctac 7260 ggattcttat gcaagttcag gcatttcaaa ctacggtttc gagttgatga accagactat 7320 tccggtattc caccaatgcc accctacgat tggagccatt ctgtatatgg aaacccaact 7380 gaagacatcc ctaaagatgc accaactcca ctgggaaaac gaatcgtttt gacccattac 7440 ttcgatgcaa atctaatgca tgacgtacta tcaggaaaag cagttacagg tgtagttcac 7500 ttctacaaca agactcccgt cgattggtat tccaagaaac aatctaccac ggaaaccgca 7560 acgtacggat ctgaattcct ggcatgtcga acctgtttcg aacagatcat tgatcaccga 7620 cagtatctac gataccttgg agtaccagta ggagatgagg actacgcatg gggagacaat 7680 gacgcgatga tcaatagtgc aaccataccg gacgcaaagt tacataaacg acataacatt 7740 ctgtcatttc actttgttag aagcttaatt gcaagtggtt tcattaatct gcaacatatt 7800 aaatcggaaa gtaatattgc agatatactt acgaaacatt ggggttatca aagtacgtac 7860 gaattgatcc gcccaatctt tcattttgga ggtaacacgg ccgcgttata ttttgatgat 7920 acattagaag tcgatcgtca cattactgaa tcagagttag cagaaatcgt tacgaccaat 7980 ggggag 7986 // ID ALISEI_I repbase; DNA; PLN; 3240 BP. XX AC AF153059; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Picea abies gypsy-type retrotransposon ALISEI_I, internal region, DE partial sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ALISEI_I; KW Gypsy superfamily; internal region; partial sequence; KW internal portion. XX OS Picea abies OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea. XX RN [1] RP 1-3240 RA Cattonaro F. and Morgante M.; RT "Direct submission."; RL Direct Submission to Genbank (21-MAY-1999). XX DR Genbank; AF153059; Positions 2192 5431. XX SQ Sequence 3240 BP; 1106 A; 550 C; 624 G; 960 T; 0 other; gctttaatta taaaaacaag tacaataagg gacataatga gtttcaagta atgattgcaa 60 atggaggaac tatcaattgc ttaggaaaat tccataagat caatcttact atgggagaat 120 aggtaataaa tagtccaatg atttctatac ccatgggtgg tgttgatgtc gtaatagggg 180 tcgaatggct acaatcactg ggaatcatgg cttttaattt tcaagaactt ttcatgaaat 240 tttcattgga agaaaaggaa tttgagttaa ggggtatcac atggaaaccc attatggtgg 300 taagctctaa tgacatgaca aaataattaa aaggggggca tcaaggtgta attgtacaac 360 tatgatcact agatgttcaa acaactaagc catatattcc tctatatatc caaagtatca 420 ttgataagca ttccaaagta tttgaagata ttcctagagg tcttccaccc actcacgatc 480 atgatcatga tattcactta attcctagga gtgtccctcc taaaatcagg ccttacagat 540 acccttatgc ctagaagagt gaaattgagc gtatggttga agaaatgtta gaggttggca 600 ttattagacc tagccaaagt tcttactctg catcggtgat aatggtactc aataaagagg 660 gctcatggtg tatgtgtcca tattatagag agttcaacaa tatcacccta aaatattagt 720 ttcccattga tgaattttta gatgaactac atggagcaat ctacttcaca aagttggatc 780 ttcattcagg ttatgatcag attagaatga aggaataaga tatcccaaaa aaaatcattc 840 agaacttatg aaggccatta tggatttttt gtcatgtttt ttagccttat ggatgcacct 900 tccacattcc aagggttgat gaattccatt ttcaatccct tcttcgaaaa tttgtgttag 960 tatttttgat gatatactaa tctataacaa gtcttggtaa gatcatgttt gagatgttga 1020 caaggtgcta caactactaa aggaacacca actatattcc aaaccatcta aatgtttctt 1080 tggggtggag gtagagtatt tgtgtcatat tatatctctt gaaggtgtca aggtagaccc 1140 taacaagatt aaatccatga tggactggct aattcccaaa acattgaaga atcttagagg 1200 atttttgtgt ttgacaggtt actacaacaa tttttttttg gaactatgga agaatagagg 1260 aacctttaac tgcattaact aagaaggatg cattttcatg gattctagag gcaactcaat 1320 attttgaaca aattaaagag gcaatgtgta aagctcatgt cttgaccaca ccagacttca 1380 caaaaacctt tattgtggaa tgtgatgcct tgggaaatgg aattggtgtt gttctaatga 1440 gagaaggaag tccccttgct tttgaaattt ggccactcaa gggaaaggac tcacacaaaa 1500 ccatttatga gaaggaaatt atggcaatac tacatgcatt gaagcaatgt ttcccttacc 1560 taataggtag gcacttcaag gtcaaaacat atcatgacag tgttaaatac ttcttggaac 1620 aaagactatc ttcagaagag caacaaaaat gggtcaccaa gatgttgggt tatgaccttg 1680 aaatcatcta caaaaggggg aaggaaaatg ttgtggaaga tgcactctca agaaaggatg 1740 aatatgttgg ggaatttctc tttgttatct ctatcatcca acctaattgg ataaaagaag 1800 caagggatga atggaagaat cacaaagaag tgtggactct cattcaaagg ttgcaacaag 1860 attccagtgc atctaataca tttacagcga aaaattattc actatggtac aaatatctct 1920 tatatttatg taactcccaa ctcaaacaaa aggtactttt ggaatttcac acctctccag 1980 taggagggca ttcaagattt ttgaaaacct atcatagggt caagagggaa ttttttgggg 2040 atggccttaa aactgatgtt caaaggtttg cggaagaatg tttagttttc caacaaaata 2100 atgtggaaat agttaaggcc tcaggtattg tacaaccatt agccattcca agtcaatgtt 2160 gtgaggaggt ttccatggat ttcatcacag ggttaccaaa gtctgaagga aagaaagtca 2220 tcatggtgat tgttgataga attaccaagt atacacacct ttgtgaactc tctcatcctt 2280 taaaagacac taaagttgct accgcattca tggagacagt tcaaaagata catggaagcc 2340 caaagattat tgtaagtgat agagacccca tcttcattcg acatttttgg acataattat 2400 tttctttttt gggtactcaa ttggctcata tctcatctta tcatcctcaa tctgatggat 2460 aaactgatat agtgaacaca tgtctcaaag gataccttca tttatttgtc tcttataaac 2520 aaacacaatg gttcaagtgg ttacccttgg cataatggtg atatagcacc tcctttcata 2580 ctgcaacaaa aatgacacca attatggcac tttatggata tcaccaccat ccatcacttc 2640 ttctctaaaa taaaaatcta atgttcaagt agtggaatat cacattgagc atcaacaaca 2700 agttctccaa ctcttaaagg acaacgtgac catggcacaa aaccacatga aacaacaaga 2760 agattggcat catagtgaaa gaagttttga agtaggggat tgggtatttt taagactaca 2820 accgtacaaa caaatgtctc tcaatcaagc taagaaggat aagaaaatat caccgaagta 2880 ctatggcctg tataaggtgt tgcaaaatat tggtactgtg gcatacaaat tggagttgtc 2940 tgcatctttg tgagtacacc ctatttccca tgtttcatgc ttaaacaagg ttataggtga 3000 caagatccca attcaaacta tagttccaaa acttgacgag gaaggaaaaa taatattgga 3060 tcatgaagct atcactgaca caataattcg ctagccgagg aatagatcaa ttttagagta 3120 tctcattaag tggaagaaac tacatgttga agattccaca tgggaagatg agtcttttat 3180 acaaaagcat ccagaactac tcaagcgttg aggaaaacat ttgtctggag gggaggggca 3240 // ID Gypsy-7_ES-LTR repbase; DNA; PLN; 513 BP. XX AC CABU01005385; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_ES_; KW Gypsy-7_ES-I; Gypsy-7_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-513 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005385; Positions 22543 23055. XX SQ Sequence 513 BP; 141 A; 100 C; 150 G; 122 T; 0 other; tgtcgtgcaa taagccaacc ctagttttgg tcagtgaaag aagacttggg gtagtttaat 60 cgcagtatat atgtttaggc gtgatggaat ggacttgcga atgatggctc tgggagcagg 120 gttggattta gttctggttg agatatcgtc aaataaggtc atgaaaagtg tatgagatgg 180 agactagaag tgaggaagtt gtggtttatg gttggaatga tgagcttatg agggaattcc 240 agtcagttga gagagagaga gatagttgga gagaaagtga agcggcgcaa ttggatagat 300 acagggaagc ggcgcaatta gctgtagtag cagctgacgt tgcatgcccc cctttttcag 360 tgttcgaatt ccctgctgat cccggcccac gaaggcctaa gaaacacact ttgatcgcac 420 gcaccttcga gacgcgaaac acacacgacc ccaccggcac atctacataa atatctgggc 480 gccagtaggc caccgccggc cgattgcacg tca 513 // ID Gypsy-49_PIT-I repbase; DNA; PLN; 12196 BP. XX AC AATU01003813; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_PIT_; KW Gypsy-49_PIT-LTR; Gypsy-49_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12196 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003813; Positions 49124 61319. XX CC 'CTAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 111..2198 FT /product="Gypsy-49_PIT-I_3p" FT /translation="MSSAQGPYEDVYDESGDEGAVAGPQEILTDPSRPSLT FT TTEGIGAVHSMVQRAGVRVRGQSGPDAGTGRTEESSVPRDTSTSVPAAPQD FT SNPDTFVAFPPGSTDSTEGWLNAYRWLQSMAPPEVAANLTGASRQPSQPWN FT TENTGNVTPNGGQVTPSPARVRMVIPSYQGYTIQSPATVGLGTDPFLTSAA FT TQRSTPVTVAPSSLVSGPGAARWNALAPSSGVGVGFPPVVTQASQVSPGVP FT AQGAPAVSFATVQPNQGPGPVNTSPTTSGFGPTVQPSAAGVGPSGGYGTAV FT PGYSSANLGGAPWGGPNGSYGSNYASGYSHPAPSTAVVPFGMPTNIRHAIR FT MIQPFYSDGASVEKAKTFWDSFERATVGLEESVRLSAFRECLKGKTGEDWW FT TYSRINSFDTLRTRFQNLFVCQTPLQLIEKLQNTKRPRGMSAEVWGDMISG FT LCDDAQCYDEQIRYQYFLTGLRNKQWRTALDGSMIDSIRGAVTQLLFKNMH FT LPSDNDEAFENTSTIRTENAALERMMNMMQQTQNLLVQQQQQQQQLLERPL FT AAAYPAPAMNVAAVYSPPAQSVPNPQAQPAATTPTTPFRGVRHGPDLYTQD FT GQIVCGRCHVLGCNRLNCRRSKATCTHCKAVGHISVECEHPPTNGYRNNPP FT RNGRKCFLCDEPGHLLSDCPLIASLKTLGATASQASTPVQGQAPRQH" FT CDS 3776..5320 FT /product="Gypsy-49_PIT-I_2p" FT /translation="MELYRKEGDKQRVKITERRSPCRKCRPKEPDPEKTPL FT AKRVSFDCSSLFSRRPEAIGSRCSSGDSENGLYGYVNVVADRPAPKRNPGL FT LEVPDSMEDTSTEDDDLVVPNGKRVIGSVGGVEALSWGFIEDTPAELLIDS FT GAVACLVHSRVLARLGLSHAPRMPYVGSLKGVSGSVISIRGVIDLPVTLGS FT AERRISFAVVDTLHVDAILGTNALREFRAVVDLDANTVTLKDTGEVFPIGS FT PRVEECYMSRITSNVRVHRGAQALVVADVQGEVEDGTTVLVEGPATLDDTV FT KIARSLCTVCKGRVIVEVCKPTGEDVIIKRGTLLASLTVVPESAFSLGAST FT IKRGSKSLAKSIPPLPQPPKCAIPREPADWIHSVKGAADVRPENTETPPPD FT PDRDPEEELEVDLESSKLGDEQKELFREVLQPFKDMFVETSMRPGRTDLLE FT FSIDTGDHAPIKQPPYRVSKAEGDVMESEIQEYLSQNLIRPSTSPWASPVL FT MIRKPDGEIRFCIDYRRSP" FT CDS 5686..8292 FT /product="Gypsy-49_PIT-I_1p" FT /translation="MKKCKWARDQVAFLGHIVTPSGILPNPEKVKSVMHVQ FT RPLDLHTVRALLGLTSYFRRYIAGYAAISAPIERLKMKGAQFVWTEDCESA FT FLQLKRKLVEPPILVYPDFSKRFQLYVDSSKLAVGACLMQTVDGRERVVAY FT ASKLLVGSEKNWIRKEDGTSEIECWGIVWATRKFRCYLDRCEFDLYTDHKA FT LTWVFNETNRTSNAKLARWAMELSQLRFKVFHKPGTSMGHVDGLSRLHSQT FT ISAISMSDLLNDANDAQQGSVEVGESSTPGVDPVVVESGIENAANADPAAP FT AGEDEPEEQLLVSLVDVFGLQQTRFLEEQKKTPWIQAMIAFLNDGALALDP FT QLRTKVLLMAPNYTVKNDVLMRRVHLKARAGPTSNLEVPVIPLPFISTVLH FT HCHKDVLSAHVGVTKTMDRVRKHAYWHGWKKDVAEYVRECIVCGSGKGYRP FT WKNGLMQKMPVQELSGPFSLLVVDAVGPLVATPRGNKFILVFADYFTRWVE FT ALPVARLDTVTFVEVMVNEVISRHGVPERLLSDQGSNFISGLARSFYETLG FT IKKLFGAAYHPQTQGLVERFNGTLLGMLRMYINESQTDWDWYLPRVLFAYR FT TSYHEALKDSPFFSLYGRDPVLPLDLAFLNTNNEWKSNEVASYRRKLFLSF FT RDTRRLVEHQLLKAQGRHEQRLGSQVSVKFAEGDPVWVYQYFRARRGERTT FT KKLAFSWHVPYRVVGTVGENAYRIAIPTHPNRVVTINVNRLKRFRGRWSRP FT LPSEVPEGVLTNPSLDDDGPLTEDDLPSTSYVERLLIGSEGTALTGVPCPV FT KDIIARRKKNPEEQFLVLLATYETLWRPRNTLLPTYASLIKAFEDNRKEAG FT LPELRRSARWKKLTPL" XX SQ Sequence 12196 BP; 2712 A; 3154 C; 3604 G; 2726 T; 0 other; cttggtggag aagcagggca gtctgcttgc tggagaaagt ctcgtttgag tgaagactcg 60 cagaagagcg tgtactacta ctacttcgac ggagaaacat tggggctgag atgtcttccg 120 cgcaaggccc ttacgaagac gtctacgacg agtctggaga cgaaggagcg gtcgctggac 180 cgcaagagat cctaactgat ccctcccgac cgagtttgac tactactgaa ggtattgggg 240 ccgtgcactc tatggtacag cgtgccggtg tccgagtacg tggtcagagt ggcccggatg 300 cgggtactgg aaggactgag gaaagctcag tcccgagaga cacctcgacg agcgttcccg 360 cggcgcctca agactcgaac cctgacacgt tcgtggcgtt cccgcccgga tctaccgact 420 cgactgaagg ctggcttaac gcgtatagat ggctccaatc tatggcgcct cctgaagtgg 480 cggcgaacct cactggtgct tcgcggcagc cctcgcagcc ttggaacact gaaaacacgg 540 gaaatgtaac cccgaacggc gggcaagtga ccccttcccc tgcgagagtc cggatggtga 600 taccgtccta tcaagggtac actatccaga gtccggcaac agtgggacta ggaactgatc 660 ccttcctcac gtcggccgcg acgcaaagga gcactcctgt gaccgtcgcc ccaagttcgt 720 tggtgagtgg gcccggagct gctcgctgga acgccctggc tcctagcagt ggagtaggcg 780 tggggtttcc cccggtggta actcaagcgt cccaagtgtc tccaggagtt ccagcgcaag 840 gggcgcctgc cgtctctttc gcgactgttc agcctaacca aggtccgggg ccggtaaaca 900 cttccccgac gacaagtgga ttcggtccga ctgttcaacc ctctgctgct ggagttggtc 960 cgtctggagg atatgggacc gctgtgcctg gttactcgtc ggcgaacctt ggaggagctc 1020 catggggcgg ccctaacgga agttatggca gtaactacgc ctctgggtac agtcatcccg 1080 cgccttcgac tgctgtggtg ccttttggga tgcctactaa cattcgacac gctatccgca 1140 tgattcagcc gttctactct gatggagcgt cggtcgagaa ggcgaagacg ttctgggact 1200 cttttgagcg tgctactgtg ggtctggagg aatccgttcg tctaagtgct ttccgcgagt 1260 gcctaaaggg caagactggt gaggattggt ggacgtactc tcgtatcaac tcttttgaca 1320 ctctccgaac ccggttccaa aacctgtttg tctgccagac tccgttgcag ctgatcgaga 1380 agctccagaa cactaagcgt ccgcgaggaa tgtccgccga agtgtggggc gacatgatct 1440 cgggcttgtg tgacgacgct cagtgttacg acgagcaaat acgctaccag tacttcctaa 1500 cgggactacg aaacaagcag tggagaactg ctctcgacgg gagtatgatt gactctatcc 1560 gtggtgctgt aacacaatta ctgttcaaga acatgcatct cccttccgac aacgacgagg 1620 cgttcgagaa cacttcgacg attcgcaccg agaacgctgc tttggaacgg atgatgaaca 1680 tgatgcaaca gacccagaat ttgctagtgc agcaacagca acagcagcaa cagttgctgg 1740 aacgtcctct ggctgctgct tacccggctc ctgccatgaa tgtggcagct gtttactctc 1800 ctcctgctca gagtgttccg aatcctcagg ctcaaccggc cgcgaccact cctactaccc 1860 cgttccgtgg cgttcgtcat ggcccggact tgtacactca agacggtcag attgtgtgtg 1920 gtaggtgtca cgttcttgga tgtaaccggc tcaactgtcg ccgaagtaag gcgacttgca 1980 cccactgtaa ggcagtgggt catatcagcg tcgagtgtga acatcctcct acgaacggtt 2040 atcggaacaa cccgccgagg aacggtcgta agtgcttctt gtgtgacgaa cctggtcact 2100 tgctttcgga ctgtcctttg attgcgtctc tgaagactct tggagcgact gcttctcaag 2160 cgtctacacc agtccaagga caagcgcccc gacagcattg atgtgggcga gagggagggg 2220 aagggagtgt cgctccttcc tcttgtcaat ggaacgacac aagtaggaac actttgaact 2280 ccttggagga gtcgaccgtg aggtatgaag tgcgtcctat gctgggtgga gtaaaaccca 2340 ccgtgttgga tgagtgtgaa tcgcctgaag aaagagagtg tgtaactgga aaagtggaga 2400 aaggaatacc tatgacctta ggagccctcg agcccgtacg agacggtgtg gcgatggtcc 2460 tcggagcaaa ccaagagtgg agtgtggagc gagagagtgc agtacaagag agtgcagaag 2520 aagaagacag gaacagtaac gagatgagtg gccgacgcaa cgagagaaca gtaacagagg 2580 aaccgtgtta cctgagagag ataaaactac aacctgagaa cgctatggag cgaggagtcc 2640 caatagtgaa ggataactac gagaatgtgg agtcgagtgt gagtaagctc gctaacatca 2700 ttaacgaccc gaggagtcac ctgggtcggg gcggacacag tcaagaagag agagaggtgc 2760 tcgttcaacc caaccggaag agcctatagt cgctgaggaa ggcattccag ccggtggcgt 2820 tgaactagaa agaacggatt cggagactag cctggatgag aacactagcc cggagaggga 2880 cgctaaagag atcgcaaccc ctgccgaaga acccgagata acgccttcgt acgcgcgagt 2940 gttctcgaag gaggaactgg atgccctaca agaaggaaag gacattggag cagctgacga 3000 gaaggaggaa tatgacaaag agctcgaaga tagactgttt ccctggacga ggtcgagctg 3060 aaacgtagac aagatgagaa cgctgagcgg tctagggaac tgtctctagc cgagctcagt 3120 acacttcttg gcgttcctga ggagaaactg gagcggactc gtgagtcttc gcccggacgg 3180 ttgtccaccc ctgaatactg gttggagcgg tatcgcaaga cgctggcctc gacgggcgcg 3240 gccaagcgtg ccaaccgtaa tttcaaggaa gaacctccgg atcatgtcgg ttcagtagtg 3300 gcgaccgcct cggatggccg agacgagggt ggaggaaccg attccaaagt gtttcccctc 3360 aaggagatta aggtggaaac cgctcactct cctgaatcga gtggatcaac ccctgcaagg 3420 gaaccggaag tcgtggacct taccgtgatc gaagccaata tcgccttagg cttcagccga 3480 caaatgtgta acctctctag tgattccacg gaggaccacg atgctcttat cgctgacgga 3540 atagtgcctg agcggtggcg tgctctaatc tggcagactg tttattattt cgtgaagact 3600 gaagaaattc agaaaggatc gctgtgcccc ggttgccatg ctgaaaagtt gaggaccgag 3660 agactgatgg aagagggaag cgttccttta tggaagcagg aggactcgtg acagtctcaa 3720 gcgtttcctt gatccgtctg cagtcgagct ggaaaatctg ctggtgcgga gaatcatgga 3780 gctttatcgg aaggaaggag acaaacagcg cgtgaagatc acagagcgga ggtccccttg 3840 ccgcaaatgt cgtccgaaag aacctgaccc tgagaagaca cccctcgcga aacgggttag 3900 ttttgactgt tcttctcttt tcagccgacg ccctgaagct attgggtcac gctgctcgtc 3960 gggagactcg gaaaatggtt tgtacggtta cgtgaacgtt gtggccgacc gacccgctcc 4020 gaagcgaaat cctggactcc tagaagtgcc tgactctatg gaggacacat cgaccgaaga 4080 tgacgactta gtggtcccga acggcaagcg tgtgattgga tctgttggcg gcgtagaagc 4140 gttatcgtgg ggtttcatag aagacactcc tgctgaactg ctaatcgact ctggagcagt 4200 agcgtgtctg gtgcacagcc gcgtattagc tcgcctaggc ctaagtcacg ctccaaggat 4260 gccctatgtt ggaagcctga agggagtgtc cggatccgtt atttccatca gaggtgtcat 4320 tgacctgccg gtgacgctag gatccgccga gagaagaatt tcgttcgcag tcgtcgatac 4380 tctacacgtg gatgctatcc tagggactaa cgctctacgg gaattcaggg ccgtggtaga 4440 tctggacgct aacactgtga cgctgaagga cactggagag gtgttcccga tcggttctcc 4500 tcgcgtcgaa gagtgctaca tgtcccgaat cacttctaat gttcgtgtcc accgtggagc 4560 gcaagctctt gtggtcgctg acgtccaggg tgaggtcgaa gacggtacga ccgttctcgt 4620 cgagggtccc gcgactctgg atgatactgt caagatcgct cgctcactgt gtacagtctg 4680 taagggtcga gtgattgtag aagtgtgcaa acctactggg gaagacgtga ttattaaaag 4740 gggaacgctg ttggcctctt taacggtagt cccggagtcg gccttctcgc tgggagcttc 4800 gactatcaag cgcggttcga agagtctggc aaagtcgatc cctccgctac cgcagccacc 4860 caagtgcgct atccccagag agcctgctga ctggatccat tctgtcaaag gtgctgcgga 4920 cgtgaggcct gagaacactg aaacgcctcc gcctgatccg gaccgtgacc ccgaggaaga 4980 gttggaagtc gacttggaga gctctaagct cggagacgag cagaaagaac tgtttcgcga 5040 agttttgcaa ccgttcaagg acatgttcgt tgagacctct atgcgaccag gccgtactga 5100 tttgctggaa ttctcgatcg acacgggcga ccacgcgccg attaaacaac ctccttaccg 5160 agtgtccaag gccgagggcg acgtcatgga atccgagatc caagaatact tgagtcagaa 5220 cctcatacga ccgtctacca gtccgtgggc tagcccagtt ttgatgattc gcaagcctga 5280 tggagagata cggttctgta ttgactaccg aaggtcacca tgaaggactg ttaccccatg 5340 ccccttatag acgatatcct ggacgtttta gggaacgcca aactgttctc aactatggat 5400 attgcctctg gatattggaa cgtccttatg gctgctgata gtgtgaagaa aacagctttt 5460 acttgtaagt acggtctgtt cgaatggctg gtgatgccct tcggactgtg caatgctgtt 5520 ccggccttcg agcgcctaat ggagacggtt ctggtgaatc tcaagtggag aacatgtctg 5580 gtgtacctcg atgactgtgt ggttttcagc gaagactttc ctactcactt cgtacggcta 5640 aagcaagtac tggaatgatt ccgatcagct ggattcaagc tcaagatgaa gaagtgcaag 5700 tgggcccggg accaagtggc gttcctggga cacatcgtca ctccttcggg catcctgccc 5760 aaccctgaaa aggtgaaatc agtgatgcac gtccagagac ctctcgatct gcatacggtt 5820 cgagcgctcc tgggcctgac gagctacttc agacgctata ttgcggggta cgctgcgatt 5880 tcggctccga tcgaacgctt gaagatgaag ggagctcaat tcgtctggac cgaagactgt 5940 gaatcagcat tcctacaact gaaacgcaaa ctggtggaac ctcctatcct agtgtatcct 6000 gacttctcga aacgcttcca gctgtatgtg gactcctcga agctagcagt tggagcgtgc 6060 ttgatgcaga ctgtcgatgg gcgagagcga gtagtggcgt acgcttctaa gttgctagta 6120 ggatcagaga agaactggat tcgcaaggag gacggcacct cggagattga atgctgggga 6180 attgtctggg ccactcgaaa gttccgctgc tatttggacc ggtgtgagtt cgacctgtat 6240 actgatcaca aagcgttgac ctgggttttc aacgagacca accgcactag taatgctaag 6300 ctggcaaggt gggcgatgga gctgtctcaa ctgcgtttca aggtgttcca caagcctggg 6360 acgtccatgg gtcacgtgga cggtctatct cggcttcact ctcaaacgat cagtgctatc 6420 tcgatgtcgg atctgcttaa cgatgcgaac gacgctcagc agggctcagt cgaagtcggg 6480 gagtcttcaa ctcccggtgt agaccccgtc gtggtggagt ccggtatcga gaacgctgcg 6540 aatgctgacc ctgctgcgcc tgcgggggaa gacgagcccg aggaacagct cttggtgtcc 6600 ctggtcgatg ttttcggact tcagcagact cgattcttag aggaacagaa gaagacgcct 6660 tggatccagg cgatgatcgc gttcctgaac gacggagctc tcgccttgga tccccagcta 6720 cggacgaagg tcttactgat ggctcctaac tacactgtga agaacgatgt tttgatgcgt 6780 cgagtacacc tgaaggctcg agctggaccc acgtccaacc tcgaagtgcc cgtgatcccg 6840 ctaccgttca tctcaaccgt tcttcaccac tgtcataagg atgtgttatc ggcacacgtg 6900 ggagttacca agacgatgga tcgagtccgt aagcatgcct attggcacgg ttggaagaag 6960 gatgtagctg agtacgttcg ggagtgtatt gtctgtggaa gcggtaaagg ttatcgaccg 7020 tggaagaatg gtctcatgca gaagatgcct gtgcaagagt tatccggacc gttctccttg 7080 ttggtcgtcg atgctgtagg cccattggtg gctactccta gaggtaacaa gttcattctg 7140 gtcttcgcgg actacttcac taggtgggtg gaggcgttac cggtggctcg gcttgatacg 7200 gtgacgttcg tggaagtgat ggtgaacgaa gtgatctccc gccatggtgt tcctgagcgg 7260 ctgctcagtg accaaggttc caacttcatc tcgggattgg ctcgctcctt ctacgagact 7320 ctcggaatca agaagttgtt cggcgctgcc tatcatcctc agacgcaagg actggtagag 7380 cgtttcaatg gtacgctctt gggaatgcta cgaatgtaca tcaacgagtc gcagaccgac 7440 tgggattggt acttgccgcg ggtactgttt gcttaccgta cttcctatca tgaggcgttg 7500 aaagattcgc ccttcttcag tctctatggt agagacccag tattgcctct ggacctagcg 7560 ttcctcaata cgaacaacga gtggaagagc aatgaggtcg ctagctatcg tcggaaactg 7620 ttcttgtctt tccgtgacac tagacgcttg gtagaacacc aacttctgaa ggctcaaggt 7680 cggcacgaac aacggttggg cagtcaagtg tcagtgaagt tcgcagaagg cgacccggtg 7740 tgggtgtacc agtatttcag ggctcggcgt ggcgaacgga cgaccaagaa gctagccttc 7800 tcgtggcatg ttccctatcg tgtggtggga acagtgggtg aaaacgctta tcgtatagcc 7860 attcctaccc atccgaaccg agtggtgacc atcaatgtca accgcttgaa gcgtttccgt 7920 ggacgctgga gtagaccgct cccgtctgaa gtgccggagg gagtactgac caaccccagc 7980 ttggatgacg acggtccttt gacggaagat gatctccctt ccactagtta cgtggaaaga 8040 ctgctcattg gtagtgaggg gacggctttg acaggtgtac cttgccccgt gaaagacatc 8100 attgcgagac gcaagaagaa tccagaggaa cagttcctag tgttattggc gacttacgag 8160 actttatgga gaccaagaaa tactctactg cctacttacg cctctctgat taaagcgttc 8220 gaagacaaca ggaaggaggc tgggcttccg gaacttcgtc gcagcgcgcg ctggaagaag 8280 ctaacgccgc tgtaaacgaa gatgaactac tcttctaaat agtagtggag tgagattggt 8340 ctttcgagtc acggtggact ctaaagtcag tcttgatggg gagtgtgcag tgaaacactt 8400 cctactttta ctttgcatat ttttggatat tacgaaacgg tttcaagcca catgcattac 8460 gaagagagac caacaagtca tcggaagcga gatgaactct acaaggggct tgttgaaaga 8520 aaaacaaaac gaaaaattag ttatgaagcg acactacttc tcctacacgc ttctaattgg 8580 gacggtctgg atcactgcgg gcgtggggaa ggaacgctgg acagcgtgac tacgctgacg 8640 tcttcgacgg tggcgacttg gacggcgaac ggtccggaga caccgtagcc ttcttaggcg 8700 aaggtgaatg cgactcggca cgctcctcgg gactctcggg agtcttcttg gtggccgacg 8760 gagcttctgc tgcttgcttg tctggcgact cttcgggctt cttcgtctca ggtggcggag 8820 agagcgaacg gtgtggggaa cgcttcggag acggaacctt ctttgtctct tttgcgaatg 8880 gcgaacgcga agctgaacgc cgacgcgaga ctcgcgaggt tcccctcttg gacgacgacc 8940 ccgctggaga tgccgaacgc ctggacgaat gcgtgcgtcg agtcttcttg gcgggcgagg 9000 ccgaacgcga ccgtgactta gagcgcttag aagaagcagt ctccgccgcc cccttttcct 9060 tagaaggagg agacttagac gccgaacgct gtcgagtggc ctaggccgaa tcccgcttgg 9120 tcggcgactt ggactgcgac gccggacgct taggagaaag cgtacgtctc gacttcttct 9180 tctccggaga cgccgatcgt gaccgagact gtgacggatg gcgagaacgc ttgggcgaca 9240 gtgtgcgtcg ggacttcttc tctactggag taggcgaacg cgatcgctcc gaatatgagg 9300 tgctagcctt gcgcttaccg cttgcgcgct tggggaaggg aggtcgctcg ggcgtagatg 9360 aacgctcgcg cggtcgcgag cgactcttcc gcttgtacga gcgacggggt gaacgagagc 9420 gtgacgtgga acgcttggcc gacttcttcg acttaggagg aagagaacgt gacaagtgca 9480 gacgcttgaa gggacgcttg ccaccggccc cactctcgcc cgaactggat tcgtagcccc 9540 gtgcgtcttt gccgtcaact ccgtcgggtc cgtcgtcctc gttctcgaac tcttcttcct 9600 ccgattccgc gtcttcttcc tcgacccggt gaaggctccg ttggtacgct caaacgatgc 9660 gtacccgtcc tgatcggctt tagaggaatc aaagggagcg atcctaggtg ccttgagcgt 9720 tctatcgcgg gctatcttga cctccgactt cttgaggcgt gggcagtgag taagagcgtg 9780 ccacactccg tctgagagat ctccaaccca atgagaagcg tgcttggtct tggacttgac 9840 gttgtgaagt acccgagcca aggagcgatc cgagagctga ctgtctgcct tcgcgctgtt 9900 cggatccagg gcgccagtgt ggaataagag ctccgtcata gtagcaaagc cgccctcgtc 9960 gatgccgaaa ggcttcagag cgccccggat gcgtcgaacg gaaccttctt ggtcgtgctg 10020 atataggcga gtcaaactgt cgatcacggg gccccggtac gacttggcat caggagtgtt 10080 ccggcctggt tgcccgccca tccacattaa gcggcgccgg ctcgtgcacc tctcgaacag 10140 ctcaagaaag ccgtagtaac cccacgtttc aatgcagaca ctaaggaagc gcacgcgggc 10200 cacgagagcc gacatcttag ccttacggcg cgcgctggag ttattgagag gcacattgag 10260 ctgccagtcc cagaagcggg cgcggttcct gttccagaag cgccaatgcg ctacgtgaac 10320 taggggaaaa tcgaagggac tgtaccagag gacggaccct ctccacggga aagccaacat 10380 gaacggctcc agcccgagcg actcggcctc ttgatagatc ttctcgagat cgtggcgcac 10440 ccgcggggga gtcctgtcgg cgagttcgaa cggtaagtcg aaggaaggag gagaccggtc 10500 cttgtgcccc tgcaaagacg tgccttgaaa gccctgtgtc ttcttctttc ccgagcccag 10560 gctagcgttc tgctgcgcat ggagcgtgac tctagcgaag cggcgatcct gtggtggttt 10620 tccgcgggcg tgctgtcgcg agggcgaagg caggatcata acgggaccag tcaaggcatc 10680 gctggcctta ccgctgccct ggatgatggc cgccgctatc tcgtccagta tccccatccc 10740 caccgttcct tcgttgatgg cgagcacgtc gcccatcgcc agccagaaac agacatcggc 10800 ggcggagtcc tgcggtcgag gcgttccttc agacgagtcg gaggaatcct cctcgacgac 10860 ctcacggagt ttcttgtagc gacccttttc gccggagccg cccatgccgc tggtgctggg 10920 agaagagtcg tcgggtgctg gcgtctgcgt cgcgtggagg caaattgccg aatgaggtgg 10980 aaaattggca gactggttgc cgcctccgtc tctctggcgt ttctcgagaa ccccgccgtt 11040 ggttgtcgac tgccctctcc cagatgtcga ctgtgaccga ttgatgggca gtgaccacga 11100 agttggagga acggtacgcg gcggagtcgg acgtgtcttc tccttattgt gaaagttcat 11160 cacaaggaat gggggctcaa gcaagccttg tcctggaata cgcgcggtgg gagctatggc 11220 cggtatacac cagcgtgatc gtcgtgtggg tgttgacgac tcccattagg agcgtcaggt 11280 gggtgttcct gacgcaggtt tggtgcgttc tatccatgaa cctcgaaatc tgtggagagt 11340 gtgcctcttc ttaccgacac actctgcaag accgtgaatt ccgccagcta cgcggttcgg 11400 tgtacgattt cgcggcgtgg agcgttttct ttaacgcacc tacctgggtc cttcaggacg 11460 gtgatgcgag atacggtgct tatgggagga tcttccgcag ttggtggata gcttgcaagg 11520 tctccttcgc cgagtaccta cctaacgtgc tcgtggacac taaggactcc gggaagcgtt 11580 actggaacgc ttcatgggaa gccagccggg ctactctact tcgtttttat ggcgttggcg 11640 agttcgtctg ctgggtcgca ttgctgtgcc tgtcgttgct gctgttcgta cctattaacc 11700 tctacgacct agtggagttc gttctacaag gacctatcgg tgtcgccatc ggacttatgc 11760 tgctagtgac gtacgactac tgttacgaat ggactcgctg ggacctgcta ggacctctca 11820 tcgtcgtagt gaccggtgtg attttgcacg cactgcgtct gtgcgaagag gataacccgc 11880 tgctttcatg gctccccaga gtgtggtcgg tcaagctttg actaacaccc aactgaacgc 11940 ttcgaagcgt aggcgtgccg aggctctctg cttggaacgc ttgcggtaca aggacggtat 12000 cgaagtgtta cacgactttc aagcgtcgga agaagatgtt cctgctacgg aagcgttcct 12060 gggtaactcc tatggaaccg agcaaccgcc ggaccatcct atcgacctta cgggtgcgcc 12120 agaaacaatg gctcgcctgc gccgccagca ttggccatcc gttcgccgag gacggcaaac 12180 tccaagtcgg ggagta 12196 // ID Gypsy-28_PSo-LTR repbase; DNA; PLN; 255 BP. XX AC AAQY01000885; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-28_PSo_; KW Gypsy-28_PSo-I; Gypsy-28_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000885; Positions 138191 137937. XX SQ Sequence 255 BP; 58 A; 57 C; 72 G; 68 T; 0 other; tggtgtgcga tacaccaagg gttactccct gggccactgg ccagtcattg agaatgaact 60 agagttagtt atgtcgatag taagtgcagg tatttgcacc gtaggcggcg gagccgcaga 120 taagagaatg aatacagttt tgccttttgc aagaagtctc tgacttgttt tcgtgggtcc 180 tcggatagga ccctgttgga ctctttgagt cgtaaagtct tcctctacgc aaggagctac 240 ggcagccccg ctgca 255 // ID PCC2 repbase; DNA; PLN; 2657 BP. XX AC X98835; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Phanerochaete chrysosporium DNA transposon PCC2. XX KW DNA transposon; Transposable Element; PCC2. XX OS Phanerochaete chrysosporium OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; OC Agaricomycetes; Corticiales; Corticiaceae; Phanerochaete. XX RN [1] RA Garcia B., Raices M., Delgado J. and Pettersson G.; RT "Characterization of a gene encoding a CDH from Phanerochaete RT chrysosporium."; RL Curr. Genet.. XX RN [2] RP 1-2657 RA Raices M.; RT "Direct submission."; RL Direct Submission to Genbank (21-JUN-1996). XX DR Genbank; X98835; Positions 1 2657. XX SQ Sequence 2657 BP; 639 A; 650 C; 799 G; 569 T; 0 other; ggtcatcagc aaaaaaaaga ccgctagatc tagctaggcc agcgatgacc aggctaccag 60 agcaggtcag cgctttcagg ctgggattgt agttgccagc tcagacatgc gatcgataag 120 cgtgaccatg cccatcagtc tgacaccata gaccaggctc gccatcatgg taagctagat 180 caggcatggc cagggctggt aatgcctggc aagcggtggc agttccgggc gcacttttgg 240 gttcgttcgg ctgctactcg ggctcatccc atatatttta gacaataaaa tcgatttatt 300 catctggata cagtacagta cacaagtggc tgggtgacaa atgcagaata gaacagacgg 360 ctggctgtac cacatacttg tgccacccac atgctagccg tgcatgacgc tgatcatgct 420 agacggatgc tatacgctag gcactgccga tagggttcgt tgaaagctga gcagcatata 480 ggatacagtg acgaacctgt caaaggaaaa gactgctgcg cctgcaagtg gacatcagta 540 caaaagggtc agaaagcaga gagctgatca cgtacatgcg cacaacccta catcccaggg 600 tatcctgtgt agcacagcag gtcagatgag taacaggtaa atgtcgacca ccgtctgcca 660 aatattctta cctttgctcg ctgtcggaag tctgcgcatg gtccgggatc agcagccgca 720 taaagacgtt ctcggacact gtgtgcagca cggtctgcgt ggctgacagc atgccgtgag 780 cgtgggagag gtgggaaaga tggggagggc atgacgggaa gtggggcgca ccttgagtca 840 ggtcatcgtg tgcccggcag ccagacgtcc tcgttctgcc atgggatgcg acgcccgaag 900 catgtgacgc cgacgacgaa cagggcgatc ttccggccaa ggcgtgtgcc aatgtccggg 960 gagagagatg gacgcaagtg agcgcacgat cgggaaacag gtgcaggcgc gcgcaccagg 1020 agggtgatgt cgacgtggat ctcggcacgc ttgccccaga cgtgagtgaa gaggtcttga 1080 agaatgaggc gcgtctcgtc ccacacgagc ttgttgttcc gctgcgcacg accgctcaga 1140 aatgcagggt cgacagggga cggcacgagg gcatacctca gagaaagcgg gcgcggcgat 1200 cttgcgggac ggcttccagt gctcgccctc gctagcgacg atgttgccgc cgaagaaggt 1260 gaggatcttg tactgttcta tcgatttcgg aaagcgcgaa ccatgtgtcg tatttcctgt 1320 aatgaagatc agtaggagta tgcagcgggg agggggaatt gaaccatgat gacgtctgcg 1380 tctgcgacat agaaattggc gttgctccca tgaacagcaa cctgatgggg ccttttggtc 1440 agcggacgag cggtctggca ggagataacg cgctcggcag ccacactgcg gggcatcggg 1500 tatccgttgt tctcgcagtt gtgtgcaatg gttgcaagcg tgtgcagggc gggtcgatat 1560 atgcgtggaa ttgatgttgt aatttcataa tttcatacac gcgtaccgta actctgcaga 1620 acaaagtcga gagcaccctg ttagcagggc aaacagcaat aggaatctga tggcgtacct 1680 tagagttgcc ccataaatgc gctgtcacct gcaccagccc gcgcaacaaa gaacaaggca 1740 ttcctcgttg cgcatgatgt ttatcctgaa gctcggcttc ggagttccac gcgatgggga 1800 ggcggcttga caaggcaggg gcaatgtagg ggtggggaac atggtggtat gaggcagaga 1860 gcagggcaga ggggacagag gatttatatg cgttggagat ggtctttact tctcgggcac 1920 ttcgacgtca tgtctccttc cgtcttgggc atgacgcgtc agtgtcacag gttttgaagt 1980 cctggtaagt aaaaacgtca caggtaagtc accatgtgac cgggtaagcc gtcaggttgt 2040 aagggttggc ttttctgcta tgcactagca tctcgagcaa gtaacatggg cagaacagcc 2100 gcaaaccttt gcttgggcga gatcgttgac cacccgatac acttaagtaa ggtgtgtttg 2160 tcacattgta gaggtatgca gatacatgct atgtagatgt cagtgaggcc gacgaggggc 2220 ctgctgtgtc agcgttcgca tgtggcacat gccactgata tatgcgattg cggaggctgc 2280 cgtgcgcatg ccacagaacc atgaaacgtt ttaagctgcc tttgcaaccc cgtttcacaa 2340 tgtaagtagt gcccgacgat tgagcgtgcc ccggacacgg tgccaaagtg aggagctggc 2400 ccatgtgcgc ttaggaagta agacgacggt gaactgtcga ttactgctca taaaaactca 2460 tacagatatt aaatcccatc catgacctta ccaggacgtt tcatgccatg cagcatcagg 2520 atgacaagcc atggccaggc aataccaggc gataccagac tggcgcgcct ttgccattgc 2580 aggtcagcgc tagtctgact ggcgccgcct tgccagccct accgtaccag atctgcgacc 2640 catttttttg ctgatgg 2657 // ID LTRTCA1 repbase; DNA; PLN; 408 BP. XX AC M94628; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Candida albicans retrotransposon Tca1 alpha long terminal DE repetitive element, 3' end. XX KW LTR Retrotransposon; Transposable Element; KW Alpha repetitive sequence; LTRTCA1; insertion site; KW Long terminal repeat (LTR); retrotransposon Tca1. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-408 RA Chen y.J. and Fonzi A.W.; RT "A temperature-regulated, retrotransposon-like element from RT Candida albicans."; RL J. Bacteriol 174(17), 5624-5632 (1992). XX DR GenBank; M94628; Positions 1 408. XX SQ Sequence 408 BP; 123 A; 71 C; 87 G; 127 T; 0 other; gaatcaggga gtgttcgcta tagagagatt tcctagccgg aatgcacgac aatcctgaga 60 cggaagtcga tcgtcgatgc ccatggtgcg tggtgaaaaa ttttcttaga aaatttgttc 120 tttccttcaa ctgcttttaa gaaagggagg ttcaagtggt ttaagtacga cggtcacaaa 180 gattgcggct tatgaggccc gaactgagtt gaaatacaaa atcaagatat aattatatac 240 cttacttgtc tatattgttt tataatacat tcttcagata tttaaatttc tgtgtatcat 300 cctataaaac agagatacat tcagtacatt tagtatactg agtgaactgg tacctgtgac 360 attcaagata actgtttcgc gcacgctggc agacgaacat tggtctgt 408 // ID Copia-1_PPa-I repbase; DNA; PLN; 4487 BP. XX AC . XX DT 16-DEC-2009 (Rel. 15.04, Created) DT 16-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; KW internal portion; Copia-1_PPa-I; Copia-1_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4487 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 565-565 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 995..1690 FT /product="Copia-1_PPa-I_1p" FT /translation="VLKKHHLQQKQKPKIDKSRSTCRACGQKGHWQGDAEC FT PKTNSNGIVNVRIVVILSAQEASFNSKTMIASLSQLRHYVCIDSAIDVHIQ FT RDKSKLLNFDENVTIQLQGYDGGISKSQGSGEMHLIVLDPIRKYILVVVKD FT VHWILGAHDTLLSAATLCKKGCKFNLDVNGVDWILPSGDLLTQGMLASKAY FT LMPCEIEEVATISSSSILSHTLIEWHQALAHASMHTIERQSR" FT CDS join(1636..2817,2845..3147,3151..4422) FT /product="Copia-1_PPa-I_2p" FT /translation="MASSISTCFNAYNREAKQMNYIEGLKIKEEKDKIPIC FT ESCIVGKAHRQPFSHKHKHANGILDVIVSDLGYFDTTSFGGTKWLAVWIDE FT YFGYCSLAFLQTKDQVHVAYKTWKAEAQRRTRRKIKTFFIDQGIEFLNNKL FT GSHFKAEGIWHMITLAYTHEIVGMAEHMMWTIFEGVQTLLDDAKLDCQYWA FT FAAKFVTWTCNCLLLARLGGKIPHEVFYGKKPSLQNAHCFGFLAWYHISKE FT KRQKLDAKARKDIFVGYSKVAKGYEIFLLEEKKMILSRDVIFFNNKDELLG FT EPLISQEKIGKDMDHRNNLDILDFQHPNELEISQPQASRLHVHDGLDGKMV FT EEEANPIPIKVVEFHQPKVEATTQALPPRCRYVSGIDPTNIISGSRMHCMP FT GDYDLPIEIVDVVHVDEYAKPETIEQAMNSPFCKEWSHAMKEELDSLKDHG FT TWKFLFLSNGKKAVDSKWIFKKKLASNGSIECFKAQLVAKDFIQVKGLDYE FT TFAPIARLAIICIFVAIAAILNWNMLQLDVVSAYLNDKLKEEDIYMKILKG FT LEVPSEHKGKVLQLLKTLYGLKQSRRGWNESLDKSLLNLGWKRSKSDPCLY FT TMYIEGLVLALIIYVDDVLIGGKNFEILVKYKDELQECYKMKDLGEPSDFL FT CIDFLQDKKNGTINLSQTKYICRKLEEFGMKDAKAIATPMVQSHVTKHEND FT DLLDAKGVKLYQKALGLLLYLVNGTRYDIAFACQYFAQYMAHPYVLHWQGI FT KQIFCYLQGTKYLVLQYRRKEANLQLVGYSDADGAGCVETRHSVGGYAFIL FT GGTIITWSSKKQSLVSVLSTEAKYAALAAATRETLWLCKVLRNYDILEPKR FT ILIYEDNQNAIAIAKNPAHHGHTKHWDIEHHFIRQCVEKGQIGLEYCPTEQ FT MAADIFTKPLLEISF" XX SQ Sequence 4487 BP; 1495 A; 653 C; 943 G; 1396 T; 0 other; tggtatcaga gctagatgaa cagtgccatg gatgaatatt attggacaaa gtttggatga 60 aaattggatg tttttggatg aaaattggat gatctgcttg ctgctagagc tccatcgctg 120 ctggaatgct accaaagcta aggagctgct ggagcttgct ggagctttat tggagctgct 180 agagctggaa tttaattcta ttgatgctga tttttattta attaaatttt atttattgct 240 ggtggtgaaa acaagttttt ttgctccaat atagcttggt actactatac tctccaaata 300 ttacattttg tagactattt gttaattatt ctcttatagt tatttgttgc tattgcatta 360 attgtatttg gcaatggcat cttcaatgga tcattgcatt gatcgattag atgaaaaaaa 420 ctatggcaca tggacatttg ttatgaaata cttgatgcgc atttgcaagc tctacatgca 480 tgtagatggg acattaaaat gtcctatgga tattgatgaa aaattaaaat ggaaatcaag 540 taaagcagaa gcacaagcat tgattgcact caatgttaag cctttgcaat taactcatat 600 atgcaaatgt aatattgcaa aagagatgtg ggacatattg gctaagatcc acaagccctc 660 aagagttatt actgagatat ttttaatgaa gaaattgtat aatctttgat atgtggatgg 720 agaatctatg gagatttttc ttggagagat ttttgatctt agggatcaat atattgaagt 780 tggtggtgaa atggacaaac aaagcatggc atttcttata cttactacat taccaaaatc 840 ttaggatcta cttattcagt cgattgcatt gaagaaaaga aaagagatca cggaagaggt 900 agtgcaatct attctccttg aggaggagat gcaaaagaag gagaagacta gttctccatt 960 ttttgcttta gtagtgcatg caagaagaaa gtaagtctta aagaagcacc atctacaaca 1020 aaaacaaaag cctaagattg ataagtctag aagtacttgt agggcttgtg gacaaaaggg 1080 gcattggcaa ggtgatgcag aatgtcctaa aacaaatagc aatggtatag taaatgttag 1140 aattgttgtt attctttcag ctcaagaggc atcatttaat tcaaaaacaa tgattgcatc 1200 attgtctcaa ttacgacatt atgtatgcat tgatagtgca atagatgtac acatccaaag 1260 agataagagt aagcttctca attttgatga aaatgtgact atccaactcc aaggctatga 1320 tggtggcatt agcaaatcac aaggctcagg tgagatgcat ctcatagttt tagatcctat 1380 aagaaaatac attcttgtgg ttgtgaagga tgtccattgg attcttggag cacatgatac 1440 tttattatca gctgcaactt tatgcaagaa aggttgcaaa tttaacttag atgtcaatgg 1500 agtcgattgg attctacctt caggtgactt actcacacaa ggcatgctag caagtaaagc 1560 ttatcttatg ccttgtgaaa ttgaagaagt tgccacaatt tctagctcat ctattttaag 1620 tcatacactt attgaatggc atcaagcatt agcacatgct tcaatgcata caatagagag 1680 gcaaagcaga tgaattatat tgaaggatta aagatcaagg aagagaagga taaaatacct 1740 atatgtgaat catgcattgt tggcaaggcc cataggcaac ctttttcaca caagcataag 1800 catgccaatg gtattttaga tgtaatagta tctgaccttg gttattttga tacaactagc 1860 tttggtggta ccaaatggtt agctgtgtgg attgatgaat attttggcta ttgtagcctt 1920 gcatttcttc aaactaagga ccaagtacat gttgcttata agacttggaa agcagaggca 1980 caaagaagaa ctagaagaaa gataaaaact tttttcattg atcaaggcat tgaattcttg 2040 aataataagc ttggttctca cttcaaagct gaaggcattt ggcacatgat cactcttgca 2100 tatacacatg aaattgttgg catggcagag catatgatgt ggactatttt tgaaggagta 2160 caaacacttt tagacgatgc caagctggat tgtcaatatt gggcatttgc agcaaaattt 2220 gtgacttgga cttgcaattg ccttctactt gcaagactcg gtggtaagat accacatgaa 2280 gttttttatg gtaaaaaacc ttctcttcaa aatgctcatt gctttggttt tcttgcttgg 2340 tatcacatat caaaggaaaa acgtcaaaag ctcgatgcaa aggcaaggaa ggatattttt 2400 gttggatatt caaaagtggc aaaaggatat gaaatttttc tacttgaaga aaagaagatg 2460 atccttagtc gagatgtgat tttttttaat aataaggatg aattacttgg tgagccacta 2520 atctctcaag aaaaaattgg aaaagatatg gatcatagaa ataatcttga tatactagat 2580 tttcaacatc caaatgaatt agaaatatcc caacctcaag cctcaagatt acatgtgcat 2640 gatggattgg atggaaaaat ggttgaagaa gaagcaaatc ctataccaat aaaagtagtg 2700 gaattccatc aaccaaaagt ggaggcaacc actcaagctc taccaccaag atgtcgttat 2760 gtaagtggca ttgatccaac aaatattata agtggtagta ggatgcattg catgccttga 2820 aaaaaagaca ataattttat ttgaggagat tatgacttgc caattgaaat agtggatgtg 2880 gttcatgttg atgaatatgc aaaaccagag actattgagc aagccatgaa ttcacctttt 2940 tgcaaagagt ggagtcatgc catgaaggaa gaactcgatt ctttgaaaga tcatggtaca 3000 tggaaatttt tatttttatc caatggtaag aaggctgtag attcaaaatg gatttttaag 3060 aaaaaacttg ctagcaatgg ctctattgaa tgttttaaag cacaattggt tgcaaaagat 3120 tttattcaag tgaaaggtct tgattactaa gaaacttttg caccaattgc tcgccttgca 3180 ataatttgca tatttgttgc aattgctgct atccttaatt ggaatatgtt gcaacttgat 3240 gttgtttcag cttatttaaa tgataaactt aaagaagaag atatttatat gaagattcta 3300 aaaggtttgg aagttccatc agaacacaaa ggcaaggtgt tgcaattgct aaagacttta 3360 tatggtttga agcaatctag acgtggatgg aatgagagtt tggataaatc tttattgaat 3420 cttggttgga agcgctcaaa atcagatcct tgtttgtaca caatgtacat tgaaggacta 3480 gttcttgcac taattatcta tgttgatgac gtacttattg gtggcaagaa ctttgagatc 3540 cttgtgaaat acaaggatga attgcaagag tgctacaaga tgaaagacct tggtgaacct 3600 agtgattttc tttgcattga ttttttgcaa gataagaaaa atggtactat taatttgagc 3660 caaactaagt acatttgtcg aaagttggag gaatttggga tgaaagatgc aaaggcaatt 3720 gctacaccaa tggtacaaag tcatgtcact aagcatgaga atgatgatct tttggatgca 3780 aaaggtgtaa agctttatca aaaagcttta ggtttgttat tgtaccttgt aaatggtaca 3840 aggtatgaca ttgcatttgc ttgtcaatac tttgctcaat acatggcaca tccatatgtt 3900 ttgcattggc aaggaatcaa acaaatattt tgttacttgc aaggaacaaa atatttggta 3960 ttgcaatata gaagaaaaga agcaaatttg caacttgtag gctacagtga tgcagatgga 4020 gcaggttgtg tggagacgcg ccattcagta ggaggttatg catttatatt gggtgggaca 4080 attatcactt ggtcaagcaa gaagcaatct ttagtttctg ttttgtcaac agaggcaaag 4140 tatgcagctt tggctgctgc aacaagggag actttgtggc tttgtaaagt acttaggaat 4200 tatgacattc ttgagccaaa aaggattctt atttatgaag ataaccaaaa tgccattgct 4260 attgccaaga atccagcaca ccatggtcat acaaagcatt gggatataga acatcatttt 4320 attaggcaat gtgtggagaa aggacaaatt ggtttggagt attgtcccac agagcagatg 4380 gcggcagaca tcttcacaaa acctctccta gagataagtt tctagctttt agggatatat 4440 taggtcttgt ttcagtagag aattaagtcc cacttctgaa agaggag 4487 // ID Copia-9_ES-I repbase; DNA; PLN; 6609 BP. XX AC CABU01005729; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_ES_; KW Copia-9_ES-LTR; Copia-9_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-6609 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005729; Positions 5906 12514. XX CC Positions [2207-2707] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 224..3697 FT /product="Copia-9_ES-I_2p" FT /translation="MAESTGKLTSIVRGIPKFDGNPNKYEDWKVDIKTVLE FT LSRRDMFEILNGDSSRPNEIYARRARASGTMEAPVPSEEVADGDSSKAVGT FT QEESSASSAATAVVIPGRTADRDSPGTGSPDLQARDLEQPGPPQNQREIDE FT WEQINALLYNVLFLTTSGDAKCFMRTYESKKGRKADGQAAWLALENKHQNK FT STHRRQQLMTRLANFRMEEGSDPDTFFRNIDQLAEQLELVGEHVSRHRKMD FT TIMRGMPREYESIKFHVMSNPDFTLEQLKFTIQNMHMNGYATSGRRGRGSA FT MAAGPARRDTSKVRRYSCGELGHYQKDCTKTGGSADNLGGDTSTPRQNGDT FT TGKKKWCSFHKTHTHDTSECKASAARKAAPKSSRKQHRQGKSNFANAAAEE FT DESSSDSVSTKDIARVFKHISLSLQASEEKDSTTSDQDSDDIPKAMGFSFT FT VTEEEESLSTSDHNTTRLPMMVDSGASAHYIDDKLVPGIKAMMTDYRRLVP FT SRVITTAGLHKLRGTATGYIRCGITDSHGKTHVACLPITIVPGIGRNLFSS FT GAAQTKGIETIISDVPRLKRKNVHFPLRRDGSIFKVDLKILPKISSAQAQS FT AFPATNEDTDNWHRRLGHLNENSMKTLRSKPDSGVLFQGDLSPCKVCKLGK FT SAQLKHPKEPTVTTTSPFELVYTDLAGPFKPQAKDGSNYFSKFTDHHTRWK FT AVYPISSKDQAIDTLAYFIQDYVIPLGLRVQRLRCDKGGEYVAEYYRSYCR FT ETGIKMEFASTNTPQQNGVSERDGRTIMNMTRCILIDTGLPKFLWGEICET FT SVFLINRSPHRALGGSSPHSKLFGKEPNLSGLRGIGARAFVHNERHGNKLE FT QRAWEGIMLGYSKDSKSYRVYNPHNRRITESRNVTFIETPPTAIPEAGQDK FT LLSNQDEDEDADNNGADEAYRWDILAHLPLLGTTREEPNNEEDQELEKNNY FT LEGSPRPLTTTGSGVTFDPPSTPDSVGTPSSRTSFDHGEDSTQGQDPSSSS FT LLPDTSPDRATSLRSQGPVTSLSRTLRSKGPAQDPPSVDTAGLDGKTRLEL FT KRLATSATFEKEDYAHEPERSSLVEYAYVTETITQSNPDPASITLPNTFKE FT AKASTHSAQWSKAMDKEMASLHENNVYDLIPRSAVPVGNKVIGSRWVFKV" FT CDS 3574..5085 FT /product="Copia-9_ES-I_1p" FT /translation="MVQGNGQGNGEPSREQRLRPHPKIGGSGRKQGHRIAV FT GVQGLERLHFQGKNCLSRICSATWESIAGQPLQPVCRIESQRILMAIACHF FT DWDILMLDVKTAFLQSPIDSPTYVRQAPGYEKLDAQGKPFIMKLKQAVYGL FT RTASRVWHLTLDKALMAMGFRATKTDPCMYITEIGGGYCLLTIYVDDILLT FT SPDKKLLVKKKKQLMDRFTMSDLGEVSLILGMKITRDRVKKTLRISQTDYT FT TSLLERLGMQDCNPVSTPSVGGELLLDQPAETLLDEDGIKTYQSLVGSLLY FT LSRTSRWDISYAVLELTRATSKPSKAHMSRAKHVLRYLKQRPELDIVFKSR FT DFKIQAWADASFAQDLEKRRSTSGYLFLLCGAPISWASSLQSLTALSTTEA FT EMVSISYAARECCHIQDMLSELGFLNQFSNIRIGNDSTGALSLVSNNSYSA FT RTKHLQLRKWFTTELIESGRLSVYHVPSGDLPADLFTKSTTKAIHRKLVDQ FT ILAYSTKD" XX SQ Sequence 6609 BP; 1846 A; 1672 C; 1731 G; 1360 T; 0 other; agaggttatg agcctcggtt agcgctctgg cacatcgttc gaggtcaagg tcgaggaaac 60 gaagattcgg gactcgtgac aagatctgga agcgaggaat actttctgga tctacgagat 120 ctacgacgga aatcaagaac acgagaaatt ggatcggact ggcggagctc caggatccaa 180 caagcaagta caagccctca agcgcagcag ctggtgtaac atcatggcag agtccaccgg 240 caagctcacg tcgatcgtca gaggcatccc gaagttcgac gggaatccaa acaagtatga 300 agattggaag gtcgacatca agaccgttct ggaattatct cggcgggaca tgttcgagat 360 attgaatggc gactcctcaa gaccgaatga gatctatgcg cggcgagccc gtgcatcagg 420 caccatggaa gccccggtgc ccagcgagga agtcgctgac ggggacagca gcaaggctgt 480 aggaactcaa gaagaatcat cagccagcag tgcggcgact gctgttgtga taccaggaag 540 gactgcggat cgtgacagtc ccgggacagg atcgccggat cttcaagcgc gagatttgga 600 acaacctggg ccacctcaga atcaacgtga gattgatgaa tgggagcaga tcaacgctct 660 actatataat gtcttattcc tgactaccag tggagacgca aagtgtttta tgcgcacgta 720 cgagtcgaag aaaggaagga aggcagacgg ccaagcagcc tggcttgcgc tggagaacaa 780 gcatcagaac aagtcaactc acaggaggca acaactcatg acaagacttg ccaacttccg 840 aatggaagaa ggatccgatc cggacacctt cttcaggaac attgaccagc tcgccgagca 900 gctcgagctg gtaggagagc atgtttcgcg gcacagaaaa atggacacca tcatgagggg 960 gatgcccaga gagtacgagt ccatcaagtt ccacgtcatg agcaatccag attttactct 1020 ggagcagcta aaattcacta ttcagaacat gcacatgaac ggatatgcaa catccgggcg 1080 cagaggaagg ggatcagcca tggcagctgg tccagctaga cgtgacacgt ctaaggtcag 1140 acgctactcg tgtggtgagc ttggacacta ccagaaagac tgcacgaaga cgggaggatc 1200 ggccgacaac ctcggtggcg acacatccac accccgtcag aacggcgaca cgaccggaaa 1260 gaagaaatgg tgttctttcc acaaaacaca cacccacgac acctcagaat gcaaagcatc 1320 agcggctagg aaggccgcac cgaagtcttc taggaaacag cacaggcagg gcaagagcaa 1380 cttcgccaac gcagctgctg aagaagatga gtcatcaagc gacagcgtct caacgaaaga 1440 catcgctagg gtgttcaagc acatcagctt gtctcttcaa gcttctgagg agaaggattc 1500 tacgacatcg gatcaagaca gcgatgacat cccaaaagcc atgggattct cgttcacagt 1560 cacggaagag gaagaaagcc tctccacatc ggaccacaac actacccgct tgccgatgat 1620 ggtggacagc ggagcatctg ctcactacat cgacgacaaa ctggttccag ggatcaaggc 1680 gatgatgaca gattatcgta gactggtccc atcccgtgtc ataaccacgg caggcctgca 1740 caagctgcgt ggaacagcta caggctacat acggtgtggc atcaccgaca gccacggcaa 1800 gacgcatgtg gcgtgtctac ccatcacgat agttccgggg atcggacgga acttgttctc 1860 atccggagct gcccagacga agggaataga aaccatcata tcggatgttc ctagactgaa 1920 acggaaaaac gttcactttc ctctgaggcg agatgggtcg atcttcaagg tggatttgaa 1980 gattctcccc aagatttcat cagctcaggc acagtcggca ttccctgcta ccaacgagga 2040 cacggacaac tggcaccgtc gtctcggaca cctgaacgag aacagcatga agacgctgcg 2100 ctccaagcct gactcgggtg ttttgttcca aggagatctt tccccttgca aggtttgcaa 2160 gcttgggaaa agtgctcagc tcaagcatcc aaaggagcct acggtcacga caacctctcc 2220 gttcgagttg gtctacacgg atttggccgg accgttcaag cctcaagcaa aggacgggtc 2280 caactatttc agcaagttca cggatcacca caccagatgg aaagcggttt acccgatatc 2340 ttccaaggat caagctatcg acaccctggc ttatttcatt caggactacg tcatccccct 2400 ggggctaagg gtgcagcgtc tacgctgcga caaaggcgga gagtacgtgg ctgagtacta 2460 caggagctac tgcagggaaa ccggaataaa gatggagttt gcatcgacaa atactcctca 2520 gcagaatggt gtatcggaac gtgacggaag gacgataatg aacatgacaa ggtgcatcct 2580 catcgacact ggacttccga agttcctgtg gggagaaata tgcgaaacgt cggtcttcct 2640 tattaatcgc tctcctcatc gtgcacttgg cggaagctcg ccacactcca agctatttgg 2700 gaaagaacca aatctttcgg gtttgagggg tattggagca agggccttcg tgcacaacga 2760 gagacacggc aacaagctag aacagagggc ttgggaaggc atcatgctgg ggtacagcaa 2820 ggacagcaag tcctatcgag tctacaatcc acacaaccgc cggattacgg aaagccggaa 2880 tgtcacgttc attgagacgc cgccaacggc aataccggaa gctggacaag acaagctcct 2940 gtccaatcaa gacgaagacg aagatgcaga taacaacggc gctgatgaag cgtatcgttg 3000 ggacattctt gcacatttac ccctcctcgg cacaaccagg gaggaaccca acaacgagga 3060 ggaccaagag ttggagaaaa acaactattt ggagggttca ccacgtccac tcacgacaac 3120 cggttcaggg gtcacgtttg atccgccatc aacaccggat tctgtgggaa caccgagtag 3180 ccgaacgtca tttgaccacg gagaggactc gacgcaggga caggacccct caagttcttc 3240 attgcttcct gatacatcgc cagacagggc aacatcacta cggtcgcagg gacctgtcac 3300 atctttgagc aggacattac ggtccaaggg accagcccaa gaccccccga gtgtggacac 3360 tgcggggcta gacggaaaaa cgagactcga attgaaacga ctggctacgt cggccacgtt 3420 cgagaaagaa gactatgcgc acgagccgga acgtagttca ctcgtggagt atgcatacgt 3480 cacggaaaca atcacccaat ccaacccgga tcctgccagc attacgctgc ccaacacgtt 3540 caaggaagcc aaggcatcaa cacacagcgc acaatggtcc aaggcaatgg acaaggaaat 3600 ggcgagcctt cacgagaaca acgtctacga cctcatccca agatcggcgg ttccggtcgg 3660 aaacaaggtc atcggatcgc ggtgggtgtt caaggtctag agcgactaca ctttcaaggc 3720 aagaattgtc tgtcaaggat atgctcagcg acctgggaat cgattgcggg gcaacctttg 3780 caaccggttt gccgcatcga gagtcaacgg atactaatgg ccatcgcctg ccattttgac 3840 tgggatattt tgatgctgga cgtcaagacg gcgttccttc aaagccctat cgactcaccg 3900 acatacgtgc gacaagctcc tggatacgag aagcttgacg ctcaaggaaa acccttcatc 3960 atgaagttaa agcaagctgt ttatggactg cggacagcaa gccgcgtttg gcatctcaca 4020 ttggacaagg ctcttatggc gatgggattc agggctacaa agacggaccc gtgcatgtac 4080 atcacagaaa ttgggggagg atactgtcta ttgacaattt acgttgatga cattctcctg 4140 acatcgccgg acaagaagct actcgtcaag aagaagaagc agcttatgga ccgctttacc 4200 atgagcgacc tcggagaggt gtccctcatc ctggggatga agatcacacg cgatcgagta 4260 aagaagaccc tccggatcag ccaaacggac tacaccactt cactattgga acgattaggg 4320 atgcaagact gcaacccagt tagcacgcca agcgtcggag gagagctatt gctggatcag 4380 ccagcggaga ctctactcga cgaggacggc atcaagacgt accaaagctt agtcggaagc 4440 cttttgtatt tgagccggac aagccgctgg gacatatcat acgctgtgct tgaattgaca 4500 cgggctacca gcaaacccag caaggcgcac atgtccaggg ctaagcatgt actccggtac 4560 ctcaaacaac ggccagagtt ggacatcgtg ttcaagagca gggatttcaa gatccaagct 4620 tgggcagacg caagctttgc tcaagacctt gagaagagga ggtcaacaag tggatacctt 4680 tttcttctgt gcggcgcgcc catttcatgg gcttcatcac ttcaatcgct gactgcactc 4740 agcacaacgg aggcggagat ggtttcaatc tcctatgcag cacgagaatg ctgccacatt 4800 caagacatgt tgtcggaact cggattcctc aatcagttca gcaacattcg gatcggaaat 4860 gattcgacgg gcgctctatc gctagtgagt aacaactcct acagcgccag gacgaagcac 4920 cttcagctgc ggaagtggtt cacaacggag ctcatcgaaa gcggacgctt gagcgtatat 4980 cacgtcccgt cgggagatct acctgccgac ctcttcacga agagcaccac gaaggccatc 5040 caccgaaagc tcgtcgacca gattctggct tattcaacca aggattgagg atctttggag 5100 cggccaggaa ttccatccag aactagggaa caaccatcta cacttgcaac tacttggggc 5160 gagtgggacc tttcgaggca tcatccatgg atagatatcg gacgtacatg cttcacccag 5220 gttgcacgcc atggtgactg gacagaatgc gagatcagac tggaggatgt gcccccacac 5280 cttcactcca catccagcca tcatctcctc aacattcaat cgacattatc aagtactacg 5340 acatgtcgag gttttccctg aagaggacgt tgagtacgct taagttcttc aagacggaag 5400 cgctatgcga agttgaatcg cagattagcg ataggatcga ggcttcccgc gacgacatca 5460 aggagttgga gcaacaacga gaacctatcc tggacgagat acaggccaga accaagagcg 5520 atgacaagag cgatgacaag atcgacaaca acatgtatgt tccaagattt ttggaagacc 5580 ctttccttcg accgcaagga ggaccgccac ctccaccacc agtaaggagg ggcgactgca 5640 cgtccagcag cagcaacatc actgaagatg attccgtgtc attcagtgga gatgaccgca 5700 gcgcaaacaa cagtcacaag acaaagggca aaggcaaggc cagggcggat gtagcttcca 5760 ctagttcggt attttttcac ttgaattggg gatggctagg acatctaatg gcaaatgtat 5820 tgttttcatc ggcctcttct gctgagcggg tatggatcgt attacgcgac gtcggaattt 5880 tttcgtgcaa gtaccatgtc tttcacgatt tttatgtgca agctcgataa tattgctgat 5940 gccaacctga tcagatcagt gttggaggat gaagtttgga caacgctgac tcagttatgg 6000 atatcagaat ctctcaaaac gggggtccta gttttcagcg ttaaacgtgc acaggaaatc 6060 aaggcaactc tgcgtagccg agctgagatt ttttccgtta cccctcatcc cgaagaaagg 6120 ctggacgatt atggtcggga catcgatctt tatttcttgt aatcaaccat ggagattgtt 6180 ccatccacga taaccggtag cgtagacgaa tggattggtg tgactatatc gaaactcgta 6240 tttagtgaat accattcgag cgggcatatc tgtgactaca tcgtaactcg tattccgtta 6300 atgcgattcg agggggcatc tgtgtgtgtt catgaatacc atagtttgga gctatgcaat 6360 aggtttgaaa gtctgttggc attttgatta cgaacccaga gcgagcggtg gagcatacca 6420 ttgttctgtc acggataagc atccctgaag aatttattca ctccaaaggt catgcatgta 6480 tttttctgct cgttgaagtt tcacagtatc agcgtactac aagtagatag ttcgcagtat 6540 ctcagcatcc tagatgttca gtacaagctg ttcatagatt atggacattg cttgattgag 6600 ggggcatgt 6609 // ID Copia-36_PIT-LTR repbase; DNA; PLN; 532 BP. XX AC AATU01000692; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-36_PIT_; KW Copia-36_PIT-I; Copia-36_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-532 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000692; Positions 254702 255233. XX SQ Sequence 532 BP; 117 A; 147 C; 131 G; 137 T; 0 other; tgtgagatgc cagcccctgt gtgaagaggc tagcaccagc agtacataca agtggcctgt 60 cagtgcctgg cattgacact gacagccgat cctacatcct atcctacgcc tgttgctgca 120 gcctgcggct gcgcacttac cgacgtgcca cgtgcggtta taccaagttt actatgatcg 180 atggacaaga gcgaccgtgc cgccgtgctg ctcacgacga cactgactta ggtaaagtat 240 ggtttatatt agtttatgta tcgaatagaa cttgcggaga ggcgtactgg cttgcgtgag 300 gcttgctctc tctctctcac aattcaattt gcggttcagc gaacctcaga gaggagagca 360 agcccacacc agtactgcag ccctgtcgtg gccttttgcc cggcactcac tgtgtttacg 420 tacctctttt gattgcttta ctacttaagt gtaagtctac tctaatggca cctacgctta 480 gaagtgacct acgcttagag agcagtccag tgacgcgccc tgcgtcacct ca 532 // ID Gypsy-7_PIT-I repbase; DNA; PLN; 5048 BP. XX AC AATU01002683; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PIT_; KW Gypsy-7_PIT-LTR; Gypsy-7_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5048 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002683; Positions 134997 129950. XX CC 'ACACG' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 222..1232 FT /product="Gypsy-7_PIT-I_2p" FT /translation="MAETPNVNNAGAQTQEANGDAAAGPGPSSVPPTATAN FT NATHAGSAAAGPDVTAQLMQMLIAQQQTMQAQQQQAIQAQQEQFHAFMQQQ FT ALFQREMYESQARANTQKQKADPPKFNGKSSEDLELWLFHIEEHFSAYAAE FT RGAPDSRFVDMVVPFLGTEAMSWYREFKTTLGVSPRVWAVFKQQIRLRFRD FT SDFDYKLLSKLYNLRVSGTQQDYTSKFMLLLSQLTIDMPEIVKRWFYQQDL FT RSDTSCHISQNIPTTLHDAIMHAQRFEDARGTRRGDLKDLPSTNDKKQGKS FT GSEFTSRGATSKTKAKAPIVCLYCHQPGHIAPACPERGNTGVPKN" FT CDS 1652..4312 FT /product="Gypsy-7_PIT-I_1p" FT /translation="MEVPEGKDVLLGMPWLVTANPDIDWSTRVITPRNGNR FT ALAFCQCVPAQVSMRVGGRRTRCQRRSTPVSTDILHYYSTHNYQSVYGATR FT VVSTRHLKALLRATDNEFCLFINANEPASKEDLAWEVLKTSPAYPLRCKFR FT SQLFREELPSVPPVREGLMEASIELTDDTPVHRKQFPLSAAQREAIRLWTK FT EMLAAKIIRKSASPYCAPTFCVRKSLGEWRIVHDFRKLNAKMRVPTNPIPR FT KEEIYRAMAGAQLFSAIDLLWGFYQVRLRADSIPYTAFSTPDDLYEYLVTP FT MGVSSSPSCFNRLVQSIFSDQQAFCQTYFDDIFVFTAIKSVDEHLMALEKV FT FQRCVDQNLYIKLSKCTFCAAEISCLGDIIGKDDVRMDPTECSTIADWPVS FT RTKHQIQSFLSTCVYVLRFCPDFAALVAPLTELTKGKAKNDKVEFTEVHRT FT AFDSLKTRLTSPPILAHPDFSRPFHVSMDASDFTVGGYLFQRNENGAEQII FT AYGGRKLSRAEIIYPTREKELLAALHAMRLWKVYLIDRPFYINTDHHTIAT FT NLQQQTCSQRLARWLNKLALFRPMFKWIEGSSNIVADMISRKPVWNDGTAR FT AIRLSALLESLTKPELAIEPNSLFVLQREGQVCILDECRRLCTTDSYIGPI FT LKRLSTDQPELSSELRHFHVDAGLVYFQPFVGAPRRLCIPPNASLRNRLLF FT EEHDVVSRGHPGYQKTYIYMAAKYYWPNMIKTVRKYVASCESCQRSKSPRG FT KAHGLLRPLDVPSFRWQDISMDFMVSLPTTSAGHDAIMVIVDRLTKRAHFT FT PTSTRASALDTATLFCSAYQRLHGLPGSIASDRDAKFTSKFWTSLMKLQGS FT ELHLSTAFRPSTDGQSEVTNKFIIKYLRHFLDPH" XX SQ Sequence 5048 BP; 1210 A; 1356 C; 1203 G; 1279 T; 0 other; atttcaaaat tatacctgag gttatacttg agtcgaattc aagtttccag ttcaagtttc 60 tagtctccag tctgggcttt caacaacttg tgaaagtctc gacgtactgt tctacttcgt 120 ttaagtacga aaagagagcg tatgaaaaca ccccgtcccg ttgaagacga atctcccaat 180 ctgcgccccg tcagcaaact cgcctagacg acgagtctaa catggctgag acgcccaacg 240 ttaacaatgc tggggcccag acccaagagg caaacggtga tgccgcagca ggcccaggtc 300 cgtcctcggt cccgcctacc gctaccgcca acaacgcgac tcatgctgga tcagcagccg 360 ctggccctga tgtgactgcc caactcatgc aaatgctcat cgcacagcaa cagacgatgc 420 aggctcagca gcagcaggct atacaggccc aacaagagca attccatgct ttcatgcaac 480 agcaagcgct attccagcgc gaaatgtacg agagccaagc gcgtgcaaac acccagaagc 540 aaaaggcgga cccgcctaag ttcaacggca agtcgtccga ggacctggag ctttggctct 600 ttcacattga ggagcatttc agcgcgtatg ctgcagagcg tggtgcccct gattctaggt 660 tcgtcgacat ggtcgtcccg tttctgggaa ctgaagccat gtcgtggtac cgtgagttta 720 agacgaccct tggggtgtca cctcgcgtct gggctgtctt taaacagcaa attcgtttac 780 gatttcgcga cagcgatttt gactacaagc tgttgtctaa gctctacaat cttcgcgtct 840 cgggaacgca gcaagattac acgtcaaaat ttatgctact tttgtcccaa ttgacgattg 900 acatgcctga aattgtcaaa aggtggttct atcagcaaga tcttcgatcc gatacaagct 960 gtcatatatc tcagaacatc cctaccacac tacacgatgc catcatgcac gcacaacgtt 1020 ttgaagacgc ccgtggtacc cgtcgcggtg atctgaaaga tctgccttca acaaatgaca 1080 agaaacaggg caaatccggg tcggaattta cctcccgagg cgcaaccagc aagacaaagg 1140 caaaggcgcc tattgtgtgc ctttactgtc accagcctgg ccacattgca ccagcgtgtc 1200 ccgagcgtgg gaacaccggg gtgccaaaaa attagctagc tcggcgggct ggcgccccgc 1260 cgagcacgac tccgacagtg gcgaccatac actgttcgtg agctcagcta caccgtcctt 1320 cagtccaact gtttgtgtga cgacaccggc tctttatgtt tacagtcgcg acaatcccac 1380 atacagtaga cctaagcacg gaatttatgg ttttctggaa cagccagccg tcattcggtc 1440 caaggctgtt tctactttta tcgactgtgg tgcttcattt aacacggtca cgcctcagct 1500 cgtcgagaaa ctcgggctac gcgtagcgaa ctacatcaca cctgtctcca tccgcattgg 1560 tggcggcaag aagttaataa tcccgcgaaa ggtggtccgt ctcaagtgcc taattcccga 1620 attttcgtct tacactactc gcgccctcgt tatggaggtg cccgagggta aggatgtcct 1680 cttgggcatg ccttggctag ttacagctaa tcctgatatt gattggtcca ctcgagttat 1740 cactccacgg aacggcaata gggcattggc cttttgtcag tgtgtgccgg cacaagtctc 1800 tatgcgcgtc ggcggacgtc gtactcgctg tcagcgccgt tcaactcctg tatcgacaga 1860 tatcttgcac tactacagca cccataacta tcagtctgtg tatggggcta cgcgcgtggt 1920 ctcgacaaga cacctgaaag ctctacttcg cgccactgac aacgagttct gcctttttat 1980 caacgcaaac gaacctgcat cgaaagaaga cctcgcctgg gaagtattga agacatctcc 2040 agcgtaccct ctgcgttgca agttccgctc gcagttattt cgtgaggaat tgccatccgt 2100 gcctcccgtg cgtgaaggtc taatggaggc aagtattgag ctgacggacg acactcctgt 2160 ccacaggaaa caatttccat tatctgcagc ccagcgagaa gcaattcgac tgtggacgaa 2220 ggaaatgctg gcagcaaaga ttatccgcaa atcagcttcg ccctactgcg cacccacatt 2280 ttgcgtccgg aagagcttgg gagaatggcg tattgtccat gactttcgga agcttaatgc 2340 aaaaatgcgc gtgcccacta accccatacc tcgtaaggag gaaatttacc gagctatggc 2400 tggagctcag ctcttctcgg ctatcgatct cctttggggt ttctatcaag ttcgactgcg 2460 cgccgactcc attccgtaca cagcgttttc cacacccgat gacctctacg agtacttggt 2520 cacacctatg ggcgtgtcaa gcagtccatc gtgcttcaat aggctcgtgc aatccatttt 2580 tagcgatcag caggccttct gccagactta ctttgatgat attttcgtgt ttactgctat 2640 caagtccgtg gacgaacatc taatggcgtt ggagaaggtg tttcagcgct gcgtcgatca 2700 gaatctgtac atcaaacttt ctaaatgcac attttgtgct gcagaaatat cttgtctcgg 2760 tgacatcatc ggaaaagatg acgtccgaat ggatcctaca gagtgcagca ccatcgcgga 2820 ctggccggtg tctcgtacga agcatcaaat tcagtcattt ttgagtacgt gtgtctacgt 2880 gttgcgattt tgtcccgact tcgcggcatt agtggctccc cttacagaat taaccaaggg 2940 caaagccaag aacgacaagg ttgagtttac agaggttcac aggacagcgt tcgattctct 3000 caagacacgt ttaacatcac ctccgatatt ggcacatcca gatttttcgc gcccatttca 3060 tgttagtatg gacgcatcgg actttacagt tggcggatat ttgtttcagc gtaacgagaa 3120 tggtgccgag caaattattg cgtacggtgg acggaagctg tctcgtgcag aaataattta 3180 tccaacacgt gagaaggaac ttctggcagc cttgcacgcg atgcgacttt ggaaagttta 3240 tctgattgat cgaccttttt acattaacac cgatcatcac acgattgcca cgaatctcca 3300 gcagcaaacg tgttctcaga gattggcgcg gtggctcaat aagcttgcgc tcttccgacc 3360 aatgtttaag tggattgaag gcagctcaaa tattgtagcg gatatgattt ctaggaagcc 3420 cgtctggaat gatgggactg ctcgagcgat tcgtttatca gcactgttgg agtctttgac 3480 gaagccggag ctcgcgattg agcccaactc gcttttcgta ctacaacgtg agggacaagt 3540 ctgtatcctc gacgagtgtc gccgattatg tactacggac tcatatattg gccccatttt 3600 gaaacggcta tcaacagacc agcctgagct ttcctccgaa ttacgtcatt ttcacgtcga 3660 cgctggatta gtttactttc agccatttgt cggagcacct cgtcggctgt gcatcccccc 3720 caacgcgtcg ctacgcaatc gactgctttt tgaggagcac gatgttgtgt cccgaggtca 3780 ccctggttat cagaagactt acatttacat ggcagcaaag tattactggc ccaatatgat 3840 aaaaactgtt cgcaagtacg tggctagctg tgagtcatgt cagcgctcga agagccctcg 3900 tggtaaagca catgggcttt tgcggccact ggatgtaccc tcgtttcgat ggcaggacat 3960 tagcatggat ttcatggtga gcctaccgac gacatcggct ggccacgatg ctatcatggt 4020 gatcgtcgac cgactaacaa aacgggccca ttttacgccg acttcaacta gagcctccgc 4080 tcttgacact gctacacttt tctgttcggc ttatcagcgc ttacacggtc tccctggctc 4140 aattgcttcg gatcgagatg ctaaattcac atcgaagttt tggaccagtt taatgaagct 4200 ccaagggtct gaacttcatt tgagtactgc gtttcgaccg tcgaccgatg ggcaatcgga 4260 agtgacgaac aagtttatta tcaagtatct ccgacacttt ctcgatcctc actagacgga 4320 ttgggaagcc tgtcttccta tggctgaatt tgcgtacaat tcgcgtattc attccacccc 4380 tggattggca ccgtttgtcg cggatctggg gtatttgccg cgttcggttg gcgacttggt 4440 ggtcactacg gctgccgacg tttttccgcc tgccgctacc ttccttgaag tacaaaaagc 4500 gactttagtc gaagcacaga attctatgac ggcagctcag cgttcttggc accgcaacta 4560 cgaccgcaat cgccccgcca ctagtttcgt tattgacgat aaagttttac tcgacaccaa 4620 aaatctcgat atttcacaca ctgggtcagc ggggaagcgc aaatttgcat cccgatttat 4680 tggaccatac caaattgagg cggtcactga ccccgatcgc tatcggctag tacttcctga 4740 tggtctacgt ctctttcccg aattccatgt ctccttgcta cgtcgctatt actccgaccc 4800 cgatccgagc cgtcgacaac gagttccagt ggtcctcgtc gctgatggtt cgacaggtca 4860 cctcgtacag gcggtaacag gacaccggaa gcgcaaaggc attcaacagt acaagataaa 4920 gtggattgat agctctcttt caccgtcctg ggaacctctg tccaatctcg gacaggttaa 4980 ggaacttatt cgggagtatc tcgatcagtt gcccactacc cggactactg ctcttctaaa 5040 gaagggat 5048 // ID Gypsy-5_SMo-I repbase; DNA; PLN; 4826 BP. XX AC ADFJ01000343; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_SMo_; KW Gypsy-5_SMo-LTR; Gypsy-5_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4826 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000343; Positions 83729 88554. XX CC Positions [2044-2505] - Reverse transcriptase CC Positions [3640-4119] - Integrase core CC 'ATCAC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1252..4812 FT /product="Gypsy-5_SMo-I_1p" FT /translation="MDTDFAARHHVPLSPTIRDLRVEGIGGHFVSPSSGLR FT ETLPVRVHIGSTVTDIAFNIINSKSSSVVLGLPWFQLHQPQICWKDLQLIS FT PTSPSPTASPGVHRVRIRKSSLNSSRGSVPDSTQFSSSSFFSLPYYTGQYP FT RLIIPFSRTPPPISTITMKELLHEEPLFLFALHVSPVSLPEKYHDFGDVFD FT KKKASVLPVHRPYDCPIDLQEGASPPWGPIYGLSPSELKALKEYVDENLAS FT GYIQHSQSPAGAPVFFVKKKDGSLRLVIDYRGLNKVTVRNRYPLPLISDLL FT ERLGGARFFTKIDLRGAYNLIRIRPGDEWKTAFRTRYGHFEYTVMPFGLTN FT APAVFQHMANDVFREFLDQMVIVYLDDILIYSKTQEEHDEHVRKVLAKLRE FT HGLYAKLEKCSFDQQSVEFLGYIVTPEGITMDPAKVKTILEWEPPQSMSDV FT QVFLGFANFYHKFIDHYSDIVLPLTHLTRKDVPFSWSAAAQQAFDTLKAAF FT SSAPVLIHADSSQPFFIEADASDFAIGAVLSQLGADHELHPVAFHSRKFQP FT AEINYEIHDKELLAIVDSFGEWRRFLEGASHQTTVLTDHKNLEYFATSRVL FT SRRQARWAQFLSRFDFVIKYRPGKFQGLPDALSRRSYLSLRPGNPAFDQQD FT QVILGPDRLQVMAISLAPQDSSLMDAIRNDLQSDDLASDIFPHLQAGHPVT FT PDCRRFDEFEFLDGLLYRGEQLYVPEGDARRLILMACHDSPTAGHFGIAKT FT YELVARDFWWPHMDDYIKAFVTSCDTCARNKVPRHLPSGLLRSLPVPSGPW FT ESISMDFLSDLPSSGGFNSILVVVDRFTKMAHFLPCTKEFSGEDMAKLVFR FT EIFRLHGIPTDVVSDRGPQFISHFWQRFLQLLGVKANLSSAYHPQTDGQSE FT RTIQTLEQFLRCFINYHQDNWFDILPLAEFSYNNSVHSSLRVSPFFANSGR FT NPRFNLSLPSPSESSRSNPRSESFLSNLQEIHNSISFHLHRAQESHKTFAN FT VHRQDCPPYNIGDKVWLLRRNISTTRPCPKLDFKRLGPFPITAIINPVTYR FT LALPSSYQIHPVFHSSLLEPYIPSPIPNRVIPPPPPVQLEDGSEYEVQDIL FT DSKISRSKLYYLVDWKGYGPEERTWEPADNLIHSPDLVQDFHRRYPSRPSP FT HSFSPSPIPRRSSHPPLRSRSHPRSTRS" XX SQ Sequence 4826 BP; 1011 A; 1370 C; 1047 G; 1398 T; 0 other; gtttgattca gattgtgttt tttgcttttc ttttagcttg ttttgattat ttgattgcct 60 ttgtcttttc ccccctttct tttctttctt cttgccaatg gagtctccaa gccatcctga 120 tttctttgcc gaagtccttg caaaaatcca gtctgagaat accgagctga aggcgaccct 180 tcttcgcatg cagcaggagc ttgcttcact ttcggctcaa ggatccagca aagttcctga 240 accgaaggtg agtttcccgg cgaaattttc aggcaagcgt tcggagcttc gtggattttt 300 gaatcaaatg gagctgatct ttgcacttca acatcggcgg taccccactc ccgagtctca 360 aatcggcgcg attgggacgt tgctcgaggg tgcagctttg tcatggtttt ctcctcttct 420 ggagaagagc atgaaagggg tcgtggttcc ggagctgatg gatcttcaat tgttcaaaga 480 gaagctcgaa gcatgttttg gcgagacgga tcgggttcgg gctgctacca caaagatgag 540 acgtctctct taggggtctc gtcctgcctc aatctacgct gcagagttcc aactccttgc 600 cttggacact cagtgggatg agcgggccct gattgaccaa tttcgtttcg gcctcaacaa 660 cggtgtcaag gatttgttgc tcaccatgga ggatcccaag gacctgtcgg acgccatcaa 720 caaagctgtt cgatgtgaca atcgtctctt tgaacgtcgt caggaaagtc gccgcgccgc 780 tgtttttccg tcccagactc aggaatccca gcttgagtct tcggggcata gtcctgaacc 840 tactgctccg gtcccgatgg atatttctgg tactccccga ctcattagag ggaagttgag 900 tcctgctgag aggcaacgtc gaatatctca taatctttgc ctctactgtg ctgatcctaa 960 tcacaaagca gctatgtgtc ccaggaagcc tccccgattg ctcgagttca ctctgcctca 1020 aagtccacca ctgttgcagt cgggaaacga ccctgtccaa acagagtagg agctgtctgt 1080 ttggactccc caaataaaaa tcacttttct tccttatcaa gctcctcacc acctttcatc 1140 aaagccacca ccaattcccg caacttccgc gttccatgtc tcctttcttt caccggacaa 1200 tcaggactca aggctttggc gctactggac tcgggtgcaa cttcctgctt catggacacg 1260 gactttgctg cccgacatca cgttcctctt tctcctacca tacgggatct gagggttgaa 1320 ggcatcggcg ggcattttgt gtctccatct tctggactta gggaaacgtt gcccgttcga 1380 gtacacatcg ggtccaccgt caccgatatc gccttcaaca tcatcaacag caagtcttcc 1440 tctgtggtgc tcggtcttcc ttggttccaa ctacatcagc ctcagatttg ttggaaggac 1500 ttacagctca tctctcccac atcaccatct cccacggctt cccctggtgt tcatcgagtc 1560 cgaatcagga aaagttccct aaactcaagt cggggttctg ttcctgactc tacgcagttt 1620 tcatcctctt cttttttctc tcttccatat tacactggac agtatcctcg tctcatcatt 1680 ccatttagtc gtactcctcc tcctatctcc acaatcacta tgaaagaact ccttcatgaa 1740 gaacctcttt ttctttttgc tttgcatgtt tctcctgtca gtcttcctga gaagtatcat 1800 gattttgggg atgtgtttga caagaaaaaa gctagtgtac tgcctgttca tcggccttat 1860 gattgtccca ttgatttaca ggaaggagcg tcacctccgt gggggcctat ctacgggtta 1920 tccccgtccg agcttaaggc cctcaaagag tacgtggatg agaaccttgc ctcgggctac 1980 attcagcatt cgcagtcccc ggctggagcg cctgtcttct ttgtcaagaa gaaggatggg 2040 agcttgcggc tagtcatcga ctaccgaggt ttgaacaagg tgactgttcg gaaccgttat 2100 ccactgcccc tgatctcgga cctgttggaa cgcctcggcg gtgcccgctt cttcaccaag 2160 atcgacctcc gtggagcata caacctgatc cggatccggc ctggtgatga atggaagact 2220 gcgttccgaa cccgctatgg ccacttcgag tacactgtca tgccatttgg cttgacaaat 2280 gctccagcgg ttttccaaca catggcgaac gacgtttttc gggagtttct tgatcagatg 2340 gtgatcgtct acctcgatga catcctcatc tactcaaaaa ctcaggagga gcatgacgaa 2400 catgttcgca aggtgctagc gaagctgcga gaacacggcc tatacgcgaa gcttgagaaa 2460 tgttcctttg atcagcagtc tgtggagttc cttgggtaca ttgtcactcc tgagggtatc 2520 acgatggatc ctgcaaaagt caagactatt ctcgaatggg agcctccaca atcaatgtca 2580 gacgttcagg ttttccttgg cttcgccaac ttctaccaca aattcattga tcactactct 2640 gacattgtcc ttcctctcac acatctcact cgcaaggatg ttcccttctc ttggtctgct 2700 gctgcccagc aggctttcga cacactcaag gcggcattca gttctgctcc tgtcttgatc 2760 catgctgatt cctcacaacc tttcttcatc gaggctgacg cctccgactt tgccattggt 2820 gctgtgctat ctcaactcgg agcggatcat gaacttcatc cggtcgcttt ccattctcgg 2880 aaattccagc ctgcggagat caattacgaa atccacgaca aggagcttct tgccatcgtg 2940 gattcctttg gagagtggcg ccgtttcttg gagggggcaa gccatcaaac aacagtcttg 3000 acggatcaca aaaatctcga gtactttgcc acttcccgag ttttaagccg tcgtcaagca 3060 aggtgggcac aattcctgag tcggtttgac tttgttatca agtacagacc tggaaagttt 3120 caaggccttc ctgatgctct ttcaaggcgc tcctatctca gtctcaggcc tggtaatcct 3180 gccttcgatc aacaggatca agttatcctc ggtcctgatc ggcttcaagt tatggcaatt 3240 tccctggccc ctcaggactc ctccttgatg gatgcaatca gaaacgatct tcaatccgat 3300 gatcttgcta gcgacatttt tccccatctt caggctggac acccagtgac tcccgactgc 3360 cggcgatttg acgagttcga gttcttagat ggcttattgt accgtgggga gcagctttac 3420 gttcctgaag gtgatgctcg aaggttgatc ctgatggcgt gccacgatag cccgactgct 3480 ggtcacttcg gcattgcgaa aacctatgag ctagttgcac gggacttttg gtggcctcac 3540 atggacgact acatcaaagc ttttgttacc tcctgtgaca cttgtgcccg gaataaggta 3600 cctcgccacc ttccttcagg tttgcttcgt tcccttccgg tcccttcagg tccttgggaa 3660 tccatctcca tggatttctt gagtgatctt ccgagttctg gaggcttcaa cagcatttta 3720 gtcgtggtgg atcgcttcac aaagatggcg cacttcttgc catgtaccaa ggagttttcg 3780 ggcgaggaca tggcaaaact ggtattcagg gaaattttcc gacttcatgg gattcctaca 3840 gatgtggttt cggatcgggg gcctcagttc atctctcatt tctggcaacg gtttttgcag 3900 ttgcttggag tgaaggccaa cctctcttcg gcatatcatc ctcaaactga tgggcagtcc 3960 gagcgaacga ttcagacatt ggaacaattc ttgaggtgct tcatcaacta tcatcaggat 4020 aactggtttg atatccttcc ccttgctgag ttctcctata acaactctgt tcactcctct 4080 cttcgagttt cccccttctt tgcgaactct ggccgaaatc cccgattcaa tctctcactt 4140 ccttctccat ctgaatcctc tcgttcaaat ccccgctctg aatcatttct ctccaacctt 4200 caggaaatcc acaactccat ctccttccac ctccatcgtg ctcaggaatc tcataaaaca 4260 tttgccaatg tccatcgtca ggattgtccc ccttacaata tcggggataa agtctggctc 4320 ctcaggcgaa atatctccac caccaggccc tgtccaaaac tcgatttcaa acgccttggt 4380 cctttcccta tcactgccat cattaatcct gtcacttatc gccttgcact tccctcctca 4440 tatcaaattc accccgtttt tcactcctct ctccttgagc cttatattcc cagtcctatt 4500 ccaaatcggg tcattcctcc gcctccacca gtgcagctcg aggatgggtc tgagtacgag 4560 gttcaggaca tccttgattc caagatttca cgatctaaac tctactatct ggtggactgg 4620 aagggttacg gacctgagga acgcacttgg gaacctgcgg acaacctgat tcattctcct 4680 gaccttgttc aggacttcca ccgccgctat ccttctcgtc ccagtcctca ttctttttct 4740 ccatctccca tccctcgccg ctcatctcat cctcctcttc gttctcgttc acatcctcgt 4800 tccactcgtt cttgaggagg gggtgt 4826 // ID Copia-2_ES-I repbase; DNA; PLN; 4746 BP. XX AC CABU01002974; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_ES_; KW Copia-2_ES-LTR; Copia-2_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-4746 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002974; Positions 26559 31304. XX CC Positions [1700-2233] - Integrase core CC 'CCCGG' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 1397..3118 FT /product="Copia-2_ES-I_1p" FT /translation="MTVFDGHTIFQSFDGMLIKTAYRLEDKSVGSVLTALT FT PSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMS FT KAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRR FT TWMYFLKSESDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFVGGEFASV FT CNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAVRNQAKVLFGHVQLPK FT TDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYPFLKPAY FT CRWQRPSKLLPKGEACFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALP FT SQLPPPQPSLLPIEVAEQGGEERDDDIEAEVWPLLGRGVPHILLRRDISGG FT TIDEVGSVDAGSVGQPPSMPSSPAINSPSSAAPPVSSPADEFSDEGGQGGP FT ETGQTESAGPGGQEVESESQEGLDEELVEPGGQEVQSEAFPPATHVPSNRR FT ARHELASYNTAMNENVEVREGRTRAETRAVNQQSVPGLMATLGPISASEII FT LALLVEQRASDAMELPKVLIRCRVRTG" XX SQ Sequence 4746 BP; 1124 A; 976 C; 1402 G; 1244 T; 0 other; cgctatagcg aaccagtcga ctgctgcttg tccccttgga ctgtacgtca agactgaacg 60 gaggaagatt gatcaccttg cttcgtgatg agtgggcctg ctggggatca tgtggattac 120 ccacctccgg gtgattcgcg ggatgttatt ggtggtgaga gactggattc gattgagaca 180 ctgttgtccc agctcacgag cataatcaag tcgcttgttg ggcaacgagg tgatcaggtg 240 gagtcctctg tttcatttgc tgctgcgccg ggaagcggcg gaacagagta tgctggtgtg 300 catcaatcgg atgtcactgg caggactgtg ggaggtacgg acagtagtgt ccaaggcttt 360 ggcatgtcca gcatgtgggt tgggagtagt agtcttgcag actcaggctt gaaccttcgt 420 gcaattgttg tttgtcgttc ctctgctggt ggtagagcca gcggcggaac cgacgccggt 480 tggcatcctg tagatgctac tggcaggact gcgggaggta agggcagcag tgcccaagtc 540 cttggcatgt ccagcgtgag agttgggagt agtagtcttc tagactcaga cttgaaccct 600 catgcatctg ctgtaaatcg tccctctgct ggtgctgcaa gctttggttc gattggaact 660 gttagtgggg cttcgggtag tagccagtct ttcggttcgg gaatggttag tgggacttta 720 ggtggatagt cagtcttcca ttccgggaat ggttagtggg gctttaggta gccagtcttc 780 cattccgccc ccatctactc catcgagtga gtggtgggga tgtgtcgcca gtggaaacac 840 atatattcct ggggtcggca ttaataacac aggagaaaac ttgggtagga gtccttttca 900 aagttcccaa agcttctgtt tttgacggga cggacgtgtc atatccgtcg tggtcacaat 960 tgtttctact gagtgcccac aacaataatc tgtatgaggc ttttgtttct gtgctacatg 1020 tagagatttc gattgcaagc attgaattcg atctgacccc ctgggtagag aaaggataca 1080 acatacatgg gtgtgctgtg ccagactgag atatcaaggt ggattttgtt cgactgtttg 1140 aagaactctc tcaaaaccat ggctaggcat gcaggtttcc ccagcaaggc atttcgagtg 1200 ttgaaagatc actttctacc cttgagccag agcactgtct ggaaccttgg agttggtgtt 1260 tgtgactgct gatttgagtt tctgtagagt tggagcatgt attgtaatct cccaacttgg 1320 gatatcacct cttttctccc agcgcagatt ggtggtgagt catggaatta ccttgcttgg 1380 tggtcctgat ggtgtgatga ctgttttcga cggacatact atttttcaga gcttcgatgg 1440 catgctaatt aagactgcgt atcgtcttga agataaatct gttggttcgg tgttaactgc 1500 cctcactcct tcgaacccca agcatgaatc taagatggat gtgaacgagt ttcataacat 1560 ttatgctcat tcgcatgagg gattgcttcg tacaactgca aagcgactag gtatcgagtt 1620 gaccggtaaa atgcatgctt gtacgggatg ttcgatgtcg aaggcattca agaaagggat 1680 tgctcatgaa acaaaatgca gatcagacaa aaagttgggc agagtttttg ttgacctggg 1740 agggcggaag gacgttgcgt ccgtaggggg taaacattac cccatgatag tgaaggatga 1800 tttcacaaga cggacatgga tgtatttcct gaaaagtgaa tcagacgctg cgagtgcttt 1860 ccggagtttc cttgcaagtg tgcgtgctga tggtatccca tcattggttg agattgttag 1920 atctgacaat gggggggagt ttgtcggagg agaatttgcg tccgtgtgca acgagctctt 1980 gattaagcaa gagttcaccc cggcttacag tccccaatac aacggtgttg cagagcgtgg 2040 tttgggattg attgaggcgg cggcaatggc tgttcgtaat caggcaaaag ttttgtttgg 2100 gcatgtgcaa ttacctaaga ctgatagact atgggctgag gcgatgcatt gggcttgcga 2160 agcaattaac cacacagctt gttccgctaa ccccgacagt aagtcaccgt atgagatgtg 2220 gcatggtgaa gctagtcatg ctagaccgta tccgtttttg aaaccggcgt actgtaggtg 2280 gcagcgtccg tctaagctgc taccgaaggg tgaggcttgc ttttatgtcg gtccttcgag 2340 agaccacccg cgtgactgtc atagagtact tacgagggct ggaactattc aggaaacgag 2400 gaatgtgaca tgggaagcgt tgccgtcaca gctccctcca ccgcaaccgt ctctcttgcc 2460 gatagaggtt gcagagcagg gaggggagga acgtgacgac gatatagaag ctgaggtatg 2520 gccgctttta gggagaggag ttccccacat tcttttgcga cgtgatatct ctggtggaac 2580 aatcgatgag gttggcagtg ttgatgcagg cagtgtaggt caacccccct ctatgccatc 2640 ttcgcccgcg attaattccc ctagtagcgc agctccccct gtgtcttctc cagcagacga 2700 gttctccgat gagggagggc agggagggcc ggagacaggg cagacagaat cggcgggtcc 2760 gggagggcag gaggtagagt cggagagtca ggaaggtttg gatgaagagt tggttgagcc 2820 gggagggcag gaggtacaat cggaggcatt tccccctgct acgcacgtac catccaatcg 2880 tcgtgcgcgg catgagcttg ctagttacaa cactgctatg aatgagaatg ttgaggtcag 2940 agaaggcaga acccgtgcgg aaactcgggc agtaaatcag cagagcgtac ccggcctcat 3000 ggccactcta ggacccatct ccgcatcaga aataatattg gcactcttag tcgaacagag 3060 agcatctgat gcaatggaat tgccgaaagt actaattaga tgtagagtca gaaccgggta 3120 gctatcaaga agcccgccaa tcaaagtatt ccacgatttg ggacgaagcc atgtctgtag 3180 aatttgaagg cttgttaaga gcaggaacgt ttgcgttagc agtaaaggct ccgataggct 3240 gtaacgtgat agatgctaga tgggtctaca aatggaaagc agatgaaaca ggcaagatag 3300 tgaaggccaa ggctaggctt gtagcgaagg gcttcaagca gaagcatggt gtggattatc 3360 ttgagacttt ctcgcctact gcaaatgctg catcgattcg tttgttggta gcattggcgt 3420 gcaagtatga tttggaattt cttcacttta acattgagca agcgtttgtt cagtcggaat 3480 tggatcacga ggtgttcatg aagttgcctc ctggctgtga gtcgatgaca ggaaaggtag 3540 tccgtttaga caagagtttg gactgagaca ggcatctaga acatttcaca agagacttgt 3600 gtcggacctg aagaggattg gtttcgaaca gtctctgtct gacccctgcg ttcttcgttt 3660 catgatggga gacgaggtgt tgggtatgat tgcgattcat gtggatggca ttctgtatgc 3720 aggaattgag aggcttgcca agatggttgt ggaaccgcta ggtgactctc cccccacgaa 3780 gaatttgggc gaggtcaagt tctttcttgg ttgcgcattc gttcgcgacc gcaaggctgg 3840 tacgattgag atgtctcaag agagttacat caggagtgag tgttctcgag agattcaatg 3900 tttgtcgcac cagctcgatc cctgcttccc ctgttaagtg attacaggtc cgtgatggag 3960 gatgaggcgg caggggatgt gccgttccga gaggtggtgg ggagcctgat gtggatcgcc 4020 aaccagacaa ggcccgacat ctcaaatgct gtgcgggcgg tggcgaggca ctctcacgag 4080 ccaaagaaga gccactggaa ggcggcccag aagattctga attatcttct ggagacggca 4140 catctaactt tgaagtacaa gcaggacact atggtagacg taggcacgtt ggtgtacgta 4200 gacgcagact tcgccagtaa ggccactgac cgtagatcag tttcgggagc actagttctt 4260 gtagctgact gtcttgttgc ttggatttct aggacgcaga aatgtgtcac actttcaaca 4320 actgaagcag agtatgttgc gatgggtgac ggtgtgaaag aggctctgtt tgtcaatgga 4380 atgctcgagt tcttgaggcc tagtgagaag cttggtaaga tccaggtacg cgaggataac 4440 gagggtgcga ttgcacttgc tgagaatcca cttagttcgt gtaacagtaa gcacattgac 4500 gtgaggcacc atttccttag gaatttgaca gaagagggag tgttggaaat cagtcatgtc 4560 gctagcgaaa gacagcatgc ggacatcctg acgaaggcgc tgccgagaga tctttttgaa 4620 gttcatcgta attttgctct aggctcgaga tctgagaagt agaggtctga gtcgtgtttt 4680 attttggttt gttgtttttc tgttatatat ttgatctggc cgaagaccaa cagccccaag 4740 ggaggg 4746 // ID Gypsy7-LTR_VC repbase; DNA; PLN; 402 BP. XX AC scaffold_29; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy7-VC; KW Gypsy7-I_VC; Gypsy7-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-402 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 135-135 (2008). XX DR Genome; scaffold_29; Positions 966057 965656. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 402 BP; 116 A; 84 C; 92 G; 110 T; 0 other; tgttgtagcg ccttatagcg ttacagagcc aaatcgcaaa gcgatgaagg cgtgatcgga 60 ttaagactga tctatgaaca gtctatgaat actttaagat taataagtgt ttcctaatta 120 aggattgaca ctctttcagg gttcctaccc taaccgaaca gacacctcgg tctaaccagg 180 tgtcaggtgg tccgaaggga cactccacga cagaagtcgt tgcggcctcc taagcaacga 240 gtattatata tactcgggag ggagcctggg atggatgatt aatatattta tatattaaca 300 aagagacaga gtttaattac tctttcttag acaagagccc agaccttggc ggagcgaatc 360 cgtcctgtga ctttcggttc ttgcttatat tacgcgctaa ca 402 // ID Mariner-3_PPa repbase; DNA; PLN; 1641 BP. XX AC . XX DT 22-DEC-2009 (Rel. 15.07, Created) DT 22-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Mariner-type DNA transposon - consensus. XX KW Mariner/Tc1; DNA transposon; Transposable Element; Mariner-3_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1641 RA Bao W. and Jurka J.; RT "DNA transposons from moss."; RL Repbase Reports 10(7), 947-947 (2010). XX DR [1] (Consensus) XX CC TIR is 31-bp long. XX FH Key Location/Qualifiers FT CDS join(292..582,586..1410) FT /product="Mariner-3_PPa_1p" FT /translation="MGMFLAFIHIIVSIISAHHLCKLSKMVSLRYLFVVDR FT KLVEVAALQKLKRGESTRNVARDLYVSQSWIAQFCKQHLIDLSDVNHSFGG FT RPRMYNATDRTCVREITRGGKEIAHKVGNYLREELHVGMSDSIVRRVLREA FT GLKCKVKQKKPKLILCQIKVRLEFAKHHCHWIDDDWDCVIFFDETKVNCFC FT SDGCSWYWFCDRQSTSARMVQQTIKFGGGGVMMWGCMTPNGPGMMCRIEGR FT MDQYMYREILEQELIHIVHAYNLNPTSLIFQQDNDPKHISKSVHCWLNLQE FT FTLLKWLAQSLDLNPIKYLWATLKRQLNQYETPPKRMLELWEHIEDCWASI FT TPNECKNLYRSMHKHIRAVIAAKGRWTDF" XX SQ Sequence 1641 BP; 519 A; 232 C; 368 G; 522 T; 0 other; cagtgactgc caaaactgag tatgaaatca gtaactctac cattagccat tcatactttg 60 taatttattg caataatagc caaatcagtt ggtgattcaa gttctatttt aagtaattga 120 tgtggctacc aaattacaag tccagcaatg taagatagat tgagaaagat gtggaccaaa 180 atgaattacc tctaaaactt agttatgctc acacttggat tacaatgaca tgatgcaatc 240 taagctacaa atctaacatg cacaagtggt tttttgagtg tgattgagag catgggcatg 300 ttcttggcct tcatacatat aattgtgtcc atcattagtg cacatcacct atgcaaactg 360 agcaaaatgg tttcattaag gtatctcttt gttgttgata ggaagctagt agaagtggca 420 gctttgcaaa agttgaagag gggtgagagt actagaaatg ttgctagaga cttatatgtg 480 tctcaaagtt ggattgcaca attttgtaag caacatttga ttgatttgag tgatgtgaat 540 catagttttg gtggcaggcc aaggatgtat aatgcaactg attgaaggac ttgtgtgaga 600 gaaatcacta gaggtggcaa ggaaattgca cataaagttg gaaattactt gagagaagag 660 cttcatgttg gtatgagtga tagtattgtg aggagagtgt tacgtgaagc aggtttgaaa 720 tgcaaagtga agcaaaagaa accaaagctc atactttgtc aaattaaggt aagattagaa 780 tttgctaaac atcattgtca ttggattgat gatgattggg attgtgtaat attctttgat 840 gaaacaaaag tcaattgctt ttgctccgat ggttgcagtt ggtattggtt ttgtgacagg 900 caaagtacaa gtgctagaat ggtgcaacaa acaatcaagt ttggaggtgg aggagtgatg 960 atgtggggtt gcatgactcc aaatggccct ggtatgatgt gtaggattga gggaagaatg 1020 gatcaataca tgtatagaga gattttagag caagaattga ttcatatagt gcatgcatac 1080 aatttaaatc ctacaagttt gatttttcaa caggataatg atcccaagca tatatccaag 1140 agtgtgcatt gttggctcaa tttgcaagaa tttactcttt tgaagtggct ggcacaatct 1200 ctagacttga atccaatcaa atacttgtgg gcaactttaa aacgtcaatt gaaccaatat 1260 gaaacacctc ccaaaagaat gctagaatta tgggagcata ttgaggattg ttgggcttca 1320 attactccca atgagtgtaa gaacttgtat agaagcatgc ataagcacat tagagctgtg 1380 atagctgcta aaggcaggtg gacagatttt taaatttgtt tcagctagtg tgagcaaaac 1440 tgagttttgg acctaacttc attttaattt ttcttgtata tgcatacttg tgtgtaatag 1500 acttcaatca tcatggaagt atgatttact gcaatggtaa tcttgtgcaa tttatggttt 1560 tatttttgtt gcatccaatt tacctacatt gtctgttgaa tttgaccaag ctgatttcat 1620 actcagtttt ggcagtcact g 1641 // ID Copia-12_PR-LTR repbase; DNA; PLN; 351 BP. XX AC AAQX01002942; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PR_; KW Copia-12_PR-I; Copia-12_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-351 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002942; Positions 629 279. XX SQ Sequence 351 BP; 100 A; 75 C; 106 G; 70 T; 0 other; tgttgacgtg gagcgccgtt aggatgcgcg gaggacgacg acagggactc atgcagtgat 60 gacccgcatc ggataggacg accaaggcac gagcggcacg ttcctgggca tggtgtgttt 120 ggctaatata tcctgacttg ggttaagtat gaggaacttg tcgagatctt atacgcataa 180 gatcccgaca agatacagca tactggaatc cagtcaagat ggctaggagg taatcaggac 240 gatgagatgc agcaaggaag cccagggaga gcagtagaaa aggaggacag cgtgtagatt 300 gtagagctag cgatcaatct cacttcggca tttgccctct ccaaaccaac a 351 // ID VADER repbase; DNA; PLN; 437 BP. XX AC U37228; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE transposon Vader. XX KW VADER; target site duplication; terminal inverted repeats; KW transposon. XX OS Aspergillus awamori OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC mitosporic Trichocomaceae; Aspergillus. XX RN [1] RP 1-437 RA Amutan M., Nyyssonen E., Stubbs J., Diaz-Torres R.M. RA and Dunn-Coleman N.; RT "Identification and cloning of a mobile transposon from RT Aspergillus niger var. awamori."; RL Curr. Genet 29(5), 468-473 (1996). XX RN [2] RP 1-437 RA Amutan M., Nyyssonen E., Stubbs J., Diaz-Torres R.M. RA and Dunn-Coleman N.; RT "VADER."; RL Direct Submission to Genbank (28-SEP-1995)Eini Nyyssonen, RL Microbiology, Genencor International, Inc., 180 Kimball Way, RL South San Francisco, CA 94080, USA. XX DR GenBank; U37228; Positions 1 437. XX CC The Vader element is present in approximately 15 copies in both CC A. niger var. awamori and A. niger. CC Insertion of the Vader element caused a 2-bp duplication (TA) CC of the target sequence. CC The Vader element is flanked by a 44-bp inverted repeat. XX SQ Sequence 437 BP; 150 A; 65 C; 72 G; 150 T; 0 other; acgtaatcaa cggtcgaacg ggccacacgg tcaggcgggc catcctgaaa tcccatataa 60 aagatgtctt ggggattcta ttatatatca accagtacta cttctatgaa gctctaactt 120 tgtagatagt tatatatata agaataagta ttccatgaat ttttcagatt ttagaatttt 180 tactttgata atgaaaccag attcttatat aaaacatata aatacagata ttgtaatatg 240 ataagtccat aagtaaaagt atattcattt ttagaaggta tatagatatt atttatatta 300 tttaaaatct atatagaaga aatctaattc ttctagacct ggatggtaga gatatattat 360 gtttaaaaag atatcttttg tatagtatta ccagatggcc cgcctgaccg tgtggcccgt 420 ccgaccgttg attacgt 437 // ID Gypsy3-I_VC repbase; DNA; PLN; 5990 BP. XX AC scaffold_128; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-VC; KW Gypsy3-LTR_VC; Gypsy3-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5990 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 112-112 (2008). XX DR Genome; scaffold_128; Positions 111807 117796. XX CC 'CACAC' target site duplication CC LTRs are 100% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS join(38..1300,1304..5935) FT /product="Gypsy3-I_VC_1p" FT /translation="MLLRPFLAFYRRSALPTVLQTSSSPVSSPRMNTASAD FT PAVNAVTSPMAALALAPAPTVASLDQPSGSQPRAVPIPTAVDPVPLPSPVN FT GDATMSDSQPGTVPRRLRPLEPPQPDRRRLVSADAAAKVQLSLPDYLSFLV FT DDLVGYLDLAGYTLSDSAATNWVVLSVGPASLVTDLRKSLSALTPPVIPSA FT SWLLNWFTEAVVLSSGASSYNALCRMFNAKPARSVEQVLQHLHDIRRELPA FT ATPEELIVYQLVRLLPDNLRDRLMYDRTVEIRRPWTSVDCFIRVLKTYAEE FT LKSSASPSSGSSRQGASGSGAGASGSGPRSTRSISAGRQRPDSDAKRPRLS FT ASMPDIVPLADRFRQPTGRAKSIWFRGLTMQQAQNLRNKNQCLLCRGENHF FT AQDCERAQSMFPKDFFFFERKPSMSKPRSLSCPGSDPPDGGVDLAPTTQDV FT DFSVLSAMASLAVQNNRDLCVAEPVVSGPSVAVSIEPTPAGVPQRQAHKFL FT ATMSSAPVKLSNASDRVVNRSQSELNAAFNVRLVTEPSRYCNTKTNSSMPV FT ADVPPPQELCIRKHEFQHLQQLSGRHFTWDACASNDGSNALCPKYSSPSRS FT FLHDSCAGHHVWMHPPRARIQDFLRHYLRCKSIAPSTTSGGFLLPKWVTAR FT WRPLLAGMKKLHEYPHAGYHLFSMSSGKGKMSRVQGVSSPMEFWYDAPVES FT PSESAVCVATTVPFSVSPSLAMQFAGSVCQQEATILLDSGSQAAHLLSAGF FT ARRVGLVVKPPDGSTAAPKIVVGNGQPVPFVGFAEVPVRIQGYKARLQCAV FT VEFSPAFDLILGEPWISATGAILELCNNAARLTRISGHPVLRNGPFTPIPK FT PSGSSPEVLDAVAHCSLAQAMEESDTFYLCLVSAADPVPDAVNLPGEESSL FT PPSQSSVSAFAQKVSDVVRGESPADLRLKALLLEKAHLFPDQLPASLPPDR FT NLPPVVPLEPGARPPAQRMFRYSLPEQEEMQRQISDLLEKGFIEPSCSPFG FT APVLFVKKKDGTLRMCVDYRAVNSLTIKNRFPLPRIDDLLDRLRGATVFSS FT LDLTQGYHQLRLNPSDVERTAFRTPFGHYQYKVMPFGLTNAPAVFQSAMNQ FT ALQGLPFVVVYLDDILIFSKTADEHVEHLRAVLERLEQRQFYCKLSKCEFF FT KPSVSFLGHIVSADGVRPDPRKTAVVQQWPLPKNVSELRSFLGLANYFRKF FT IRAYAALVKPLTDLLSPKTKWFWSEKCDEAFLRVKEALTQAPVLALPDPRE FT PFEVIADASDFALGAILLQRGRPVAFESRKLIPAELNYIVTEKELLAVVHA FT LKLWRCYLEGVKFTVVTDHEPNTAMRRKSLLSRRVARWSEFLESFDFDWQY FT RAGRCNPADPLSRLPGHIDVETTKVMTISAQRLGEISAFRDTTVELKCSFP FT MFESSVLDGYGIDPWFKISENTVALSQRGQFWYRGDALVVPDHADLRTTVL FT RLCHDHPLAGHTGVTKTLDLVRRSFWWPRLRQSVAAYCRTCDSCQRVKADT FT SLPGGLLLPLPIPDQKWSFVTMDFITDLPPDPDGNTSIYVFVDKLTKMVRF FT VPCKASVDSVKAAEIFVNTIVCSYGVPSVVICDRDPKFTSAFFESLFDGYQ FT IDLRRSSGYHPQTDGQTERANRVLEDMLRHFVSGDQSSWSRYLPMAEFAMN FT NSLHESTRTTPFRLMYGYEPLTPASHLVRKLGEERAKTRLQSVVKLSNPLS FT VKFSTDMQNALERAKSCLAAARDRMKKWADKGRSERGLSVGDRVLLSTKHM FT TIKGVRKLLPRFIGPFVVKEKINAVAYRLDLPPAVRIHDVFHVSLLRPYHD FT GGRVQLPPPPQIVEGELEFEVESILLHKEVKEGRRQKRFYLMRWKGQGPEF FT DSWEPEANLTNCGDLLRDYWARQSDSVPTSKSQGQATLSGDADASGSKPHR FT APQTTRHGRVIKKPSRFNAFLNHLSVTSGVPESLLFPLVWR" XX SQ Sequence 5990 BP; 1132 A; 1520 C; 1594 G; 1744 T; 0 other; ttggtatcga gacagtgaaa tttttctttc tgggattatg cttttgcggc catttcttgc 60 attttatcgt cggtcggctt tacctaccgt tcttcaaact tcttcgtctc ctgtatcttc 120 tccgaggatg aatacagctt cggccgatcc ggcggtaaac gccgttactt cgccgatggc 180 ggccttggcg cttgcaccgg cgcctacggt cgcttcgctt gatcagcctt ctgggtcaca 240 acctcgggct gtccctattc ctactgccgt ggatccggtg ccgcttccgt cgccggtcaa 300 cggtgatgct acaatgtcag attcacagcc gggcactgtg cctcggcgcc ttcgtcccct 360 cgagcccccg cagcctgaca gacgtcgtct tgtctcagcg gacgctgcag ccaaagtgca 420 attgagtttg cccgattacc tatccttctt ggtcgacgat ttagttggat acctcgactt 480 ggccggctac actctgtctg attcagctgc taccaattgg gttgtcttaa gcgtgggtcc 540 ggcgtctctc gttacagatc ttcgtaaatc gctttccgcg ttgacgccgc cggtgattcc 600 cagcgcttct tggcttctca actggttcac tgaagccgtg gtcttgtcat ccggggcctc 660 ctcttacaat gcgctttgcc gtatgttcaa cgccaaacca gcgcgttcag tggagcaagt 720 gcttcaacat cttcacgaca ttcgtcggga gctgccggct gcaactcctg aggagcttat 780 cgtctatcaa ttggttcgtc tgttgcctga caacttacgc gatcgtctca tgtacgatcg 840 cactgtcgaa atcaggcgcc catggaccag tgtggactgt tttattcgcg tcttgaagac 900 ttacgcggag gaactcaagt cctctgcttc accttcgtca ggttcatcgc gtcaaggtgc 960 ttctggctct ggtgctggag cgtctggctc tggtccccgt tcgactcgtt caatctcggc 1020 tggacggcaa cgtccggact ctgacgccaa acgcccgcgt ttgagtgcgt cgatgccgga 1080 tatagttcct ttggctgatc gtttccgtca gcctactggg cgggctaagt caatctggtt 1140 ccgcggcttg actatgcagc aagcgcaaaa tcttcgtaat aagaatcagt gccttttatg 1200 tcgcggagaa aatcacttcg cgcaggactg cgagcgtgcg cagtccatgt ttccaaagga 1260 ctttttcttc ttcgagcgga agccgtccat gtctaagccg tgacgttcgt tgtcttgtcc 1320 gggttctgac ccacccgatg gcggagttga tctcgcgcct actacacaag acgttgattt 1380 ttcggtgttg tctgcgatgg cttctttggc tgtgcagaat aatcgtgatc tgtgtgtcgc 1440 agaacctgtt gtttctggac catctgtggc tgtgtcgatt gagccgacgc ctgcgggcgt 1500 gcctcagcgg caagcgcaca agtttttggc gactatgtcg agtgcgcctg tgaagttgtc 1560 aaacgcaagt gatcgcgttg tgaatcgttc tcagtcggaa ctgaacgcgg cttttaacgt 1620 acgtctggtt acagagcctt ctcgctattg taacacaaag acgaacagtt cgatgccggt 1680 tgcagatgtc cctccgcctc aagaactttg cattcgcaag cacgaatttc agcacttgca 1740 gcagctttcc ggtcgtcact tcacttggga tgcatgcgca tctaacgatg ggtctaatgc 1800 cttgtgtccg aagtatagtt cgccttctcg cagctttttg catgatagct gcgcaggaca 1860 tcacgtttgg atgcatccgc ctcgggcgcg tattcaagat ttcctgcgtc actacctgcg 1920 ttgcaagtcg attgcgccat cgaccacgtc tgggggattt ttgcttccta agtgggttac 1980 agcgcgttgg cgtcctctgc ttgcaggcat gaaaaagctt catgagtacc cccacgcggg 2040 gtatcacctg ttttccatgt cgtcgggaaa aggtaaaatg tctcgtgtgc agggagtttc 2100 ctcgccgatg gagttctggt atgatgctcc tgtcgagtct ccttctgagt cggctgtttg 2160 cgttgcgaca accgtcccct tttcggtgtc tcccagtttg gctatgcagt tcgcaggttc 2220 tgtttgccaa caggaggcga ccatcttgct cgattcgggc agtcaagccg ctcatttact 2280 cagcgcaggt tttgcacggc gcgtgggttt ggtggttaag ccgcctgacg gttcgactgc 2340 agcacccaag atcgtcgtgg gtaacggaca gccagttcca tttgtaggct ttgctgaagt 2400 gcctgttcgt atacagggct ataaggctcg cttgcagtgc gctgtcgttg aatttagtcc 2460 cgcgttcgac cttattttgg gtgaaccttg gatttcggct actggggcta ttcttgagtt 2520 atgcaataac gctgcccgtt taactcgtat ctcgggtcat cctgttttgc gtaacggtcc 2580 ctttacaccg attcctaagc catctggttc ttctcctgaa gttctggatg cagttgcgca 2640 ttgctcactt gcgcaggcca tggaggagag tgacacgttc tacctatgtc tcgtctcggc 2700 tgcggatcct gttccggatg ctgtcaattt gccgggggag gagtcgtcac ttccgccatc 2760 gcagtcgtct gtttccgctt tcgcgcagaa ggttagtgac gtcgtgcgcg gcgagtcacc 2820 tgcggatttg cgtcttaagg ctttgttgct ggaaaaagcg catttatttc cagaccagtt 2880 gcctgcttcg ttacctcctg atcgtaattt gccgcctgtc gttccgttgg agcctggtgc 2940 tcgtccacct gctcaacgca tgtttcgcta ttcgctccct gagcaagagg aaatgcaaag 3000 gcaaatttcg gatcttttgg agaagggatt tattgaacct tcgtgttcgc cctttggtgc 3060 gcctgtcttg ttcgttaaga agaaggatgg gactttacgt atgtgtgttg actatcgcgc 3120 agtcaacagc ctcacgatca aaaatcgttt tccgttgcct cggatagatg atttgttgga 3180 tcgtttgcga ggtgcgacgg ttttcagctc acttgattta acgcagggtt atcaccagtt 3240 acggttaaat cctagcgatg tggagcgtac cgcgtttcgc actcctttcg ggcattatca 3300 gtataaagtt atgccttttg gcctgactaa tgctcctgct gtcttccagt ctgccatgaa 3360 tcaagccttg cagggtttgc cgttcgtggt agtgtatctg gacgatattc tgatcttctc 3420 gaagaccgcc gatgaacacg ttgagcatct gcgtgcagtg cttgaacgtc tcgaacagcg 3480 tcagttctac tgtaagctgt ccaagtgcga gttcttcaaa ccgtccgttt cgtttttggg 3540 gcatatcgta tcggccgacg gtgtacggcc cgatcctcgg aagactgctg ttgtccaaca 3600 gtggcctttg cccaagaatg tttcggagct tcgatctttc ctgggtcttg ctaattactt 3660 caggaaattt attcgtgcgt atgcggcttt ggttaaaccg ctaacggact tgctttctcc 3720 taagactaag tggttttggt cggagaaatg cgacgaggct ttccttcgtg ttaaggaagc 3780 gctcactcag gcaccagtgc ttgctttgcc ggatcctcgt gaacctttcg aggtgatcgc 3840 ggatgctagc gacttcgcat tgggtgcaat tttgctccag cgtggaaggc cagtggcttt 3900 tgagagccgt aaactgattc ctgctgagtt gaactacatc gtcactgaaa aagagctctt 3960 ggccgttgtg catgcgctca aattgtggcg ttgttacctc gaaggtgtaa agtttacggt 4020 cgttacagat cacgaaccta acaccgccat gcgccgtaag tctctgttgt ctcgacgtgt 4080 ggcgcggtgg tcggaatttc tggagtcttt cgatttcgat tggcagtatc gcgcgggtcg 4140 ttgcaatcct gcagatccgt tgtctcggct tccgggacac atcgacgttg aaacgacgaa 4200 ggttatgacg attagtgctc aacggttggg agaaatttct gccttccgtg acaccaccgt 4260 agagcttaag tgctcttttc ctatgttcga gtcatcggta cttgatgggt atggtatcga 4320 tccttggttt aaaatatcag aaaacacggt tgcattatcg caacgtggtc aattctggta 4380 tcgaggagat gcgttggttg tgccagatca tgctgatttg cgtactaccg ttctgcgtct 4440 ttgtcatgac catccgttgg caggccatac gggcgtaacc aaaactcttg atttggtgcg 4500 tcgttcgttt tggtggccta ggctgcgtca atcggtcgca gcgtactgtc gtacgtgtga 4560 cagctgtcag agggtaaagg cagataccag tctccctggt ggtttgcttc ttccgctgcc 4620 gattcctgat cagaagtggt ctttcgtgac catggatttt attactgatc tgcctcccga 4680 tcctgatggc aatacttcga tctatgtgtt tgtggacaaa ctcaccaaga tggttcggtt 4740 tgtgccctgt aaggcctctg ttgactctgt caaagcggct gaaatcttcg tcaacaccat 4800 tgtgtgttcg tacggtgttc cgtctgtcgt catttgcgac agggatccta agtttacctc 4860 tgcctttttc gagtcgcttt ttgatggata tcaaatcgac ttgcgtcgca gttctggtta 4920 tcatcctcaa acggatggcc aaacagaacg tgcaaatcgt gttctggagg atatgttgcg 4980 tcatttcgtt tctggcgatc aatcctcatg gtcccgttat ctgccgatgg ctgagttcgc 5040 catgaacaat tcgttgcatg agtctacgcg aactactcct tttcggttga tgtacggata 5100 tgaaccccta actccggctt ctcacctggt tcgcaaattg ggggaggaga gggccaagac 5160 gcgcttgcaa agcgtggtca aactgtctaa tccgttatct gttaaattca gtacggatat 5220 gcagaatgct ttggaacgag ctaagtcttg cttggctgct gctcgagatc ggatgaagaa 5280 atgggctgac aaaggtcgct cggaacgagg actttctgtt ggtgatcgtg tactcttgag 5340 tacgaaacac atgactatta aaggtgtgcg caaattgctg cctcgcttta tcggaccctt 5400 tgtggttaag gaaaagatca acgcggttgc gtatcggttg gatcttcctc ctgcggtgcg 5460 gatacatgat gtatttcatg tgtcactcct tcgtccgtat cacgatggtg gtcgcgttca 5520 gttacctccg ccacctcaga ttgttgaggg tgaattggag ttcgaagttg agtccatttt 5580 gcttcacaaa gaagtgaaag aaggacgtcg acaaaagcgt ttctacctaa tgcgttggaa 5640 aggtcagggc ccggaatttg attcgtggga acccgaagca aacctaacta actgcggcga 5700 tttgttgcgc gactactggg ctcgtcaatc tgactcagtt ccaacctcga agtcccaagg 5760 tcaggcgaca ctttcgggtg acgctgacgc ttctggctcg aagccgcatc gagctcctca 5820 gactactcgt cacggccgtg tgatcaaaaa gccttcgcgc tttaatgctt ttctcaacca 5880 cttgtctgtc accagcgggg ttccggaatc cctgcttttt cctctcgtgt ggcggtgaag 5940 ccaaggttgg ctggctgtcg ggacgaccag ccatttaggg gggggaatga 5990 // ID Lusen_LTR repbase; DNA; PLN; 294 BP. XX AC AF015276; XX DT 11-MAR-2006 (Rel. 11.02, Created) DT 11-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Volvox carteri retrotransposon Lusen LTR retrotransposon (LTR DE portion). XX KW Copia; LTR Retrotransposon; Transposable Element; Lusen_LTR. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-294 RA Lindauer A. and Schmitt R.; RT "Lusen, copia/ty1 class retroelement of Volvox carteri."; RL Unpublished (June, 2005). XX DR EMBL/GenBank/DDBJ; AF015276; Positions 1 294. XX SQ Sequence 294 BP; 52 A; 65 C; 89 G; 88 T; 0 other; tgttgatgcg aagggttgcc gtgtcgccct gtggcctgct tgggtaactt gtcaggctgt 60 cgtgagtgac agctgtggcc ggtctgaggt cgcatgttag actgagtaac agctttggac 120 ctgtctcggg aggcccgtca aaacggctat taggttctag cgtactgata gctctcgtcc 180 ttttgggata ggctttccaa gcctttataa gtctctgttg tttatcggta acagtacctc 240 agattcacat gtttacgcct aggcaaaggg gctttcggtg gtaggtcgcg gatc 294 // ID Gypsy-56_PIT-LTR repbase; DNA; PLN; 296 BP. XX AC AATU01004918; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_PIT_; KW Gypsy-56_PIT-I; Gypsy-56_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-296 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004918; Positions 46947 46652. XX SQ Sequence 296 BP; 93 A; 65 C; 74 G; 64 T; 0 other; tgtgatgaag cacagcactg acgtgctgtc ttatccaaca gcatgcaatg gcgagcgaag 60 ccattgagta catggatgta tacaagctgc atcggcagag gaagttgaag caggacttcc 120 acaggtgcag cattcatatg cttgaggtac gggcattcaa gtagattgta ggagaaatgg 180 tagcaaccac ttgtaggaga gctaggagca actactcgta ggacttctcc gacatctaac 240 taactcagtt gtcagtttac tacaaacaca gcaagtagcc aaaccaacac gtgaca 296 // ID RESTLESS repbase; DNA; PLN; 4097 BP. XX AC Z69893; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 28-AUG-1998 (Rel. 3.07, Last updated, Version 1) XX DE DNA transposon RESTLESS. XX KW hAT; DNA transposon; Transposable Element; hAT superfamily; KW RESTLESS; transposase. XX OS Tolypocladium inflatum OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; Clavicipitaceae; OC mitosporic Clavicipitaceae; Tolypocladium. XX RN [1] RP 1-4097 RA Kempken F. and Kuck U.; RT "restless, an active Ac-like transposon from the fungus RT Tolypocladium inflatum: structure, expression, and alternative RT RNA splicing."; RL Mol. Cell. Biol 16(11), 6563-6572 (1996). XX RN [2] RP 1-4097 RA Kempken F.; RT "RESTLESS."; RL Direct Submission to Genbank (01-MAR-1996)Kempken F.and Kueck U., RL Ruhr-Universitaet, Lehrstuhl fuer Allgemeine Botanik, RL Universitaetsstr. 150, Bochum, Germany, 44780. XX DR GenBank; Z69893; Positions 1 4097. XX SQ Sequence 4097 BP; 973 A; 1061 C; 1072 G; 991 T; 0 other; cagagtgcgt aatcaaccaa ctacttccaa ccgttgaagc cattgggccc tccaactgtg 60 ggtccaaccc aactgagatc gcgcttccct tgcttggcaa ccagccaatt ctgggggcca 120 gttgattggg tttagatcca acaggttcca actcgttcta attccagggg tcaaggtaag 180 actccgactt acaacacctg tcaatttccc agttttggct catctcactg cccgctgacc 240 aatgataggc tgccgagcag catcccttcg cgcatcgccg tctcgtccct gccctgtccc 300 ttctcccgcg ccagcttcgc gcttttctcg cgccattctg gcgtctggtt agattggatt 360 cttgggcccg tcattaaggt tgtgctcgta aggctgactg gtggggtctc ggaagatgag 420 gagacaccac gcgaaggtct gcggggtctg cgaagtcgct agaacatcag ttcaagggcg 480 tatgttggtt aaggcgcggg tccctgagac ctgggatcgt ggactgacag ttattggaaa 540 tctacgactc catcaatttg agagattcca tctagaccta aagcctagat caagttaagt 600 gtagtccact tgaaagccgg tttctttatc tctcaagaag tttcgtctac tctcaccatc 660 ccatgttatc gttctatata ttgacgaaga ccgctgataa taatgatcag tttctatcat 720 cacacacata gctttctaga ccaaacgcga actaggaaat acatctccgg tcatgatgga 780 atgggtagag gcccccaacg agaggaatct agtgataata ttttaactag catgaacatg 840 attccccgta gagactgggg tgttattggg gcagcgtagt cttgcgctca ggaggatgtt 900 acaggaacaa acctacccta tatgcgcctg ataggggcta ctgggtatcc cgcctattgt 960 gcaatggcag ggctggtatc tcttaactat acgggttgcg atttgccgct aagataacac 1020 gcactttaac gtctctcacg ttgcagacat tcttcttgta agtcatctag atagctcatt 1080 taaatctata aaattaggtt gccgttaaac atatagagag catgcaattt tggcctccta 1140 tcaggacgat ggtttcggtt gtgagatacc tcttctgccc tagattactc cactgcatgg 1200 gctgtatccg ctaacatatc ttagcaccac tgcaggacaa ttgttacttg cacacgacgc 1260 gtcgggtcgc gtagcagttt ctgaacgcgt caatcgtccc tgcatacggc ctgagaaggc 1320 tgctctatcg tggccgataa aatggaggca aaagacgtta ctctctgggt gtcaaatgtt 1380 gcagtacgtc gtccatcgaa gagcgtagta ttccttcgct gatagactcc agtagtcttg 1440 cttcccagcc gccactgcaa tggatgccga tttgcaggac cttttctggg gccaggtagg 1500 ctcggaaacg tcgttgactc tacattcttc tccctgcccg tcgaggcgct ctactcagtc 1560 ttcttctctg tccgcttcgg ctccgcagac cccgccgagg aagatactta acctcgacga 1620 gaatcccacg cctaccgaga tagcgcactt cccgttcgag ctcttcaacg acgagcttcg 1680 ggctgccacg cctccgagga ctaagggtgc caaggttgct tggtggtggg tgaaagggtt 1740 ccgtatgagg cttaagagta acgacaagaa gcttcggtgg gtgtgccgtc tctgcgtgag 1800 gaggaagtgc aggacggtct cgcacttctc ttacgaatct aacggcagtg ccaatattat 1860 caagcatctg cgagatatcc atgggatcaa ggcaagcaat tgattcctgc catcttgtac 1920 gtcatcctaa ttttgcagga tccaggaagg aaagacgaga cgccgcctag ccgcactcag 1980 actctgacag aacacttcgg agtgactgca gcccctgccg accagcgcat cttttctact 2040 atcctcggga gactcaaact cggcgcattc gaagagcttc tcgttgactg gataacacac 2100 gataatctcc ctttccgact aatcgagagt gagcgcctcc gccgactgat tgagttcatc 2160 aacccgatgt acaaggacaa ggtcccgtct tccgcggtcc tccgatctcg actgcgatct 2220 atctacaatg gggcgaaagg agcagtgacg gagcatctaa aaaccgctcg tggcaagatt 2280 cacatcgcat ttgatggctg gacgtctcgc aatcagctct cgttgcttgg agtcaattgc 2340 ttctttgttg accaactatg gcggcaccgg agactgcttc tcgcgcttcc agctgtatct 2400 ggtcggcaca cgggcgataa cttagccaac gaagtggctg atgtcttggc agagtgggat 2460 cttggaagcg accggcttgg gtatatggtc cttgataatg ccagcaataa cgacacagct 2520 atggtggctc tcggcaagga attcgggttt gacccggacg agcgccgtct ccgctgtctg 2580 ggccacgtta ttaacctcgc tgtcaagcag ttgatattcg gcgaggcggc agacgcaatg 2640 gagcatacgg gcggtagcga accggattcc gaatactatt tcgactcttt acccgcagac 2700 acccttgcgc aatggcggag gagggggcca attggtcgac ttcacaacct caacgctgca 2760 gttttgaact cgccacagca cttagagtgc ctcgtgaagt ggcaagaaga agatctcaaa 2820 agcggcgtcc ttgaacgcat cgacccagag actgggaaga agcgagtgcc gctcagaccc 2880 atcgctgaca acgagacccg atggaactct cgccaccgta tgatggtccg cgcactgctt 2940 ctccgcagat acctcaatcg gattgtcgaa aaggcagaaa gagcgtggga aaggagcaag 3000 agaaagtcag tgaagccttc aatacttgac gacaagctgt cagaagagga ctgggacgtg 3060 gttgaggttt tcattcaggt cttgcggcca ttcgatgaga tatctgttcg tctacaaggc 3120 aacccgaaga ctagtgagga tgatcatgtt aacaccggct ccttttggga gtactttccc 3180 tcctttgagt acctcttaac gcatttagag gagctcaagc agaatcatga cctccttgat 3240 ggcttgggag aggacagcgc tgatatggtt actacccata tcaaccttgc gtggatgaag 3300 cttaacgagt attacgataa gctctggcct gttgcttata tcggtgctgt agtccttcac 3360 ccttgctttg ggtggccggc gattcaatac cactgggagg gacacgcgga tgcgaagcgg 3420 tgggaagaag actactcgac gagactcatg aagctgtgga aagaggagta cgctaatcgc 3480 gaggttcctg gcttggcgat gccgtcgacg gcgagcagcc gaacggggct gtcaggatat 3540 ggcgcgttcc tggcacagtc gctcggcaaa cgcaaaagag cgcatccgga tggcagagcg 3600 gggtttactt cgcagccacg cccaacgctt gatgagtacg aacgatatat tcagaccttt 3660 acccacgccg acgacaaata ccaattccgc cccctttctt ggtggcagga gcacgaaatg 3720 gagtatccga acctctgtcg gatggccact gacttgctgt ctatccctac aatgtcagca 3780 gagactgaaa ggtcgtttag tagcgcagga aagatggtat cgcctctgcg aactcgtctt 3840 gatcgacaca ctattgggat ggcgcagggt atgcggtcat ggagcaggga gggtattgtc 3900 ctaccgtcct ggtagtgatc ctgggatcgg cgttaagatg tgaagatcgg agatatccgt 3960 tggttccaaa caaccaactc caacccaact gagagcagcc acatccaact tcaatccaac 4020 tgaaatatac ttggctggat gtcaatccaa ctgcgaggaa ataccagttg agttgaattg 4080 gttgattacg cactctg 4097 // ID Gypsy-10_PR-LTR repbase; DNA; PLN; 195 BP. XX AC AAQX01000214; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PR_; KW Gypsy-10_PR-I; Gypsy-10_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-195 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000214; Positions 229 35. XX SQ Sequence 195 BP; 41 A; 47 C; 64 G; 43 T; 0 other; tgtggtggag tgggatcgca aaaatggatg atgcgatcca aactcaccag cggtacgccc 60 ggactgccga ctatcggagg gggtactccg ttgatcaggc gtgatcagaa aaccttgtag 120 tcaccttgtg tacccgacgg cggggcgggt tacgctcttc cggtgttctc ttgaaggacg 180 tcaagggtgt gacca 195 // ID Harbinger2-1N1_ES repbase; DNA; PLN; 1019 BP. XX AC . XX DT 13-AUG-2010 (Rel. 15.09, Created) DT 13-AUG-2010 (Rel. 15.09, Last updated, Version 1) XX DE A family of non-autonomous Harbinger transposons - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; Harbinger2; Harbinger2-1_ES; KW Harbinger2-1N1_ES. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-1019 RA Kapitonov V.V. and Jurka J.; RT "Harbinger2, a novel clade of Harbinger transposons in protozoan, RT fungi, choanoflagellate, and metazoans."; RL Repbase Reports 10(9), 1212-1212 (2010). XX DR [1] (Consensus) XX CC Harbinger2-1_ES is a consensus sequence of a family of CC non-autonomous Harbinger transposons that was active in the red CC alga genome very recently. The consensus was derived from 8 CC copies over 99.5% identical to the consensus. These transposons CC are flanked by AWT target site duplications. Harbinger2-1N1_ES CC shares common termini with its autonomous counterpart CC Harbinger2-1_ES. XX SQ Sequence 1019 BP; 282 A; 270 C; 240 G; 227 T; 0 other; agagagtttc ggaacaactt ctcgatttag gaagacaact tttcgattta ggtgtaacga 60 acgttctcgg aactttattt tgtggagacc acggagttga acgcggcaag aaaacacgcc 120 ggcgcggaaa ggcggcagaa aaaaaaaaag ggacagctgc tgctgcatcg aaacatcaca 180 tcacacatcg gcagacacac acacacggcg gtgtggaggt tgatgaggag gttgacacag 240 accacgcacg catgtagttg aggggctgca ccaacagtgc aatctgtgag gaggagggtg 300 atcaaagagc ctcacttctc ttttgttgct gtgtgcgaac gagagaaata gcgttttcca 360 cgagagagag aaagagagga gagagagaga gaggaagaag caaacaagaa gagagcagac 420 gcacacacac actacacccc gattacatat atatagtaga gctcatcgcc gagccgtcta 480 gacaagtctg atcttcctct tttcctcgtg tcgcttcttc tcttgcccag caacaaccca 540 gcagcagcaa caacaaaaca gactgacagg tggtgatcaa acacacgcac gcacgcacgc 600 gtgctttttc tttcttggaa tgctccacgc ctcatacgta ccgcacttcc acacacacac 660 gcagagcaac caacccccag gtaggtgtag gtctgacctc ctctcttcgt tggcagcgat 720 ggagcccaca caaccgcacc ttccgtggtg cctggagctc catactacag ctgttgttgt 780 tgtggtggtg ggtctctttg ctccttcctc cttaaatcta tatcgtctcc tgaaagcgat 840 ttcgatttag aaaaaagcgg cgccaagcct ctacttttct aaatctgaaa gtccctttcc 900 agatttagga gctcgatgtt cccccgcttt gaggaacgtt cccagaacta gacccttcca 960 cctaaatcta gaagttccac ctaaatctat tttggtcgaa cacggttccg aaactcccc 1019 // ID BCBOTYPOL repbase; DNA; PLN; 1224 BP. XX AC X81791; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE B.cinerea pol genes of retrotransposon Boty. XX KW Gypsy; LTR Retrotransposon; Transposable Element; BCBOTYPOL; BOTY; KW RNase; Long terminal repeat (LTR); retrotransposon; KW reverse transcriptase. XX OS Botryotinia fuckeliana OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia. XX RN [1] RP 1-1224 RA Diolez A., Marches F., Fortini D. and Brygoo Y.; RT "Boty, a long-terminal-repeat retroelement in the phytopathogenic RT fungus Botrytis cinerea."; RL Appl. Environ. Microbiol 61(1), 103-108 (1995). XX RN [2] RP 1-1224 RA Diolez A.; RT "BCBOTYPOL."; RL Direct Submission to Genbank (20-SEP-1994)A. Diolez, INRA, RL Station de Pathologie Vegetale, Route de Saint-Cyr, 78026 RL Versailles, FRANCE. XX DR GenBank; X81791; Positions 1 1224. XX SQ Sequence 1224 BP; 403 A; 268 C; 285 G; 268 T; 0 other; tttcaagacc agggtcctga ggctttaccg gaacacaagc catgggatca tgagataata 60 ttggaggaag gcaagatgcc tgtgcacacc ccaatttatt caatgtcagc cgatgagtta 120 aaaaggctca gagaatacat cgacgacaat ttagccaagg gatggatcag ggaatccgcg 180 tcccaagtgg ccagtccaac tatgtgggta cccaagaagg atggacccga tagactagtt 240 gtagactata gaaagcttaa cacactcact aagaaggatc gatatccact tccattagct 300 acggaattaa gagatcggtt aggcggacgt acgatattta ccaagatgga cctacgtaat 360 ggttaccact tgatcagaat gaaggaaggc gaagaatgga agaccgcttt caaaacaaga 420 tacgggctat acgagtacca agttatgccg ttcgggctaa ccaacgcacc agcgactttc 480 atgaggctta tgaacaatgt gttgtcacaa tacttggata cttgctgtat atgctacttg 540 gacgacatcc tagtatattc aaacaacaag gttcaacaca ttaaggacgt tagcaacatc 600 ctcgaaagcc tatccaaggc agacttgctg tgcaaaccaa gcaaatgcga attccatgtc 660 acagagacag aattcttggg attcaccgta tcaagccaag ggctcaagat gagcaaagac 720 aaggttaagg cagtgctcga atggaagcag ccaaccacaa tcaaggaggt acaatccttt 780 ctagggttcg tcaacttcta cagaagattt atcaagggtt attcagggat tactacaccc 840 ttgaccacgt taaccagaaa agatcaagga agcttcgaat ggactgccaa agcacaggag 900 tcattcgata cgctcaaaca agcagtggca gaagagccaa tactattgac ttttgaccca 960 gagaaagaaa tcatagtgga gacggactcc tcggatttcg ctataggagc agttctgagc 1020 caaccgggcc agaatggaaa ataccagcca atcgcattct attcccgaaa actatcacca 1080 gctgagttga attacgagat atatgacaaa gaattactgg cgatagtcga tgcatttaga 1140 gaatggcgag tatatttgga aggtcgatac acagtacagg tgtacacaga cttggttact 1200 tcaccacaac gagcgtaccg gcgc 1224 // ID Gypsy-24_PSo-I repbase; DNA; PLN; 7795 BP. XX AC AAQY01000890; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_PSo_; KW Gypsy-24_PSo-LTR; Gypsy-24_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7795 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000890; Positions 4917 12711. XX CC 'CTAT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 130..1092 FT /product="Gypsy-24_PSo-I_1p" FT /translation="MLLIAVLRATEMATTVVRDERAQRRAASAERTAAEAA FT AAAAKRQKPSGGMTVETDEGGTQVSVTLGTSEIRSAGDTSLGTSGCDGAGG FT RTAGSDNGSGQPGGRRAPAGSGDVEGRGRPSGDAGSSGGSGSPSSDSVTQP FT GPSVDVAGHSGGIVDLTNIGDDGGRGSAMHSQAPPPSPPARGTEVGMAPAG FT GPARMQAPPPPLVVREKAKSLKLSKFKGLDDSMPVTMWLKTVRAEVRRQAA FT TMGVQWTEAQLYHEVAAHLDGEAQRWFATVMETVAPGDENIDTLASMLRAK FT YMTRRTTPEVVDLLNARRQMRGERLLEYA" FT CDS 4586..5689 FT /product="Gypsy-24_PSo-I_5p" FT /translation="MTALGVEHATHTGNEAPIKVRPRRYARSEQEVIDKEV FT TNMLQDGVIEPSSGAWGFPVVLVKQKDGSVRFCIDYRHLNAITKRDVYPLP FT RIDDTLDNLHGARRFTSLDLHTGYWQVPAAAADRDKTGFVTRQGLFRFVRM FT PFGLANAPGTFQRMMDAVLRGLTWEICLVYLDDVIVFSKGNMTRHVVERAM FT VMERLAQAGLSLKASKCSFEKEKLEYLGHELDASGVRPMESLVDSVRKFPA FT PTDAKEVKRFVHMAGYYRRFVPGFASVAAPLTRLLRKDAVWRWAESQQEAF FT EQLKCALTERPVLAYPDFTRPFKLVTDASNVGLGVTLTQDQGQGEQPVAYA FT SKRSTHPRSQSTASRTWSAWPWCGL" FT CDS join(5434..6855,6859..7794) FT /product="Gypsy-24_PSo-I_3p" FT /translation="MGRVTAGGVRAAEVCVDGATGAGLSRLHAPLQAGDRR FT FQCWIGGDADAGPRAGRATGGVRLKKVNSPTVAKYSITDLECVAVVWAVKL FT FRPYLYGRKFELVTDHAAVKWLMTSKDLTGRLQRWSLQLEEYDFKVVYRPG FT ASNVVADALSRAPVHTVTAAGQGPGGEQGAEAAAQGGEGQVTDALIRERQA FT EDKTVKELRRKGRYAGRDVVVVGELVHIREDDGSLRVVLPAALWADVLREN FT HDSIFACHLRVPQTYARIAAKYWWPDMRAHIRRWVRSCRDCGTRKSKAKEV FT IPPLRSQGVGDVGDRWALDVAGPLPVTEGGNRYVVAAVDYSTRYAVAVAVP FT SHTATLFVTEAHNHWDRWLPCATYAYNGARHSGTGFSPNELMMGRRLRAPN FT ELLRSSGVTQVGPFADYHRALVDSMQRATEAAMAALAKDQRRRAKYYDRRV FT RQHAEFDVGNRVWVLCPPRGKGLTKLTHQLGSAHIVVDAGFDNWKVEREDT FT GEHLIVHCSFLVSCHCPSDSLVSVAERILREMAEEDNDVGSDAEEPDQNED FT AVVRGGEEATVATADQMPTADGMAAVMDERTSGSVAVERSRNASTEDVAVA FT EMPAQTPGIAATDARASRSGAARGRATPSLRNKQRKRRAEADAETGGEDAL FT KRRRQQEANEAREARRLGRQAAREGQAAAAATQVGDGADGAAATTQEGGEV FT QMLRGRGRRARPAPMPELLQVATAGHIVERARRRVRNRAGRYELEHDVEYG FT VRPGGPTGRRWLTADEFEKLLDAGKIEGDIPAGAG" XX SQ Sequence 7795 BP; 1744 A; 1975 C; 2914 G; 1162 T; 0 other; tggtggtcat agcagtggct ctctgggcac gtcttaaaga ggaagacgtt gcgagctgag 60 tcattgtggg caatccccgc agcgagacaa acgaggaatg agaataagat gggatactga 120 taagtatgga tgttgcttat tgcagtttta cgagctacgg agatggctac aacagtggta 180 cgcgatgagc gcgcgcaacg gcgcgctgct tcggctgaac ggacggctgc tgaagcggcg 240 gcggctgcag cgaaacggca gaagccaagt ggagggatga cggtcgagac ggacgaagga 300 ggcacgcagg tctccgtgac gctggggacg tcggagatcc gaagcgcggg tgatacatcg 360 ctgggcacga gcggctgtga cggcgccgga ggacgtactg caggaagcga caacggcagt 420 ggacaaccgg gaggaagacg cgcgccggct ggaagcggtg acgtcgaggg ccgtggtcgt 480 ccatctggcg atgctggctc atcgggcggc agcggaagcc cgagcagcga cagcgtaacg 540 caacctgggc cgagcgtgga cgtcgcggga cacagcggcg gaattgtgga cctgacgaac 600 attggagatg atggcggacg gggcagtgcg atgcacagcc aagcgcctcc accgtcacca 660 ccagcacgag gaacagaagt ggggatggca ccggcaggtg gtccagcacg aatgcaagcg 720 ccaccaccac cgctggtcgt ccgtgagaaa gccaagtccc tcaaactgtc caagttcaag 780 ggactcgacg acagcatgcc tgtgacgatg tggctgaaga cagtgagagc ggaagtgcgc 840 agacaggcgg cgacgatggg cgtccagtgg accgaagcgc agctttacca cgaggtggcg 900 gcacacttgg acggcgaagc gcagcgctgg ttcgcgacgg tgatggagac agtcgcgccg 960 ggcgacgaga acatcgacac cttggcgtcc atgctgaggg cgaagtacat gacgagacgc 1020 acgacgccgg aggtcgtcga tctgctcaac gcgcgtcgac agatgcgggg tgagaggttg 1080 ctggagtacg cgtaatcgct gcacgagatc gcggagcagg gcgacatcag cgaggactgg 1140 ctggtgagcg cgttcctgaa gggcatgagc agcccgatgg gtgcgaccca cgtgcgtgga 1200 caccgcccca ggacgctgga tgaggcggtc agcttggcga tcccacacgt cggcgactac 1260 ggagaagggt acggtgtagg actggaggca gcagcgagcg cgtgggatgt acgccaggcg 1320 tccaaaggcc gcggggcctc ggcgagagcg acgtcgggtc aagagcagtc gggacttggg 1380 ggaaactcgg ccggagtggt gacggggtat ggaccaatgt ggaggactgc ctccaagcca 1440 ccgaggtatg ataccgaggg acgattggta ggtaccggta agaccgggac ggatgagtgg 1500 tggaaggcca taccgccggg ataccggttg gtaccggaca ccagcgggtt ggcgaattcg 1560 aattttcaaa cgcgtggcgc ccctgagcca cagattggcg cgcgcaacaa acgtccaggg 1620 ggcgaacagc tctcgaagtg tccgggtaag acgttcaagg tcgaaggcgc agctgttgcc 1680 ggtggcggca acggcggagg cgggttcaac ggaagaggga cgtttggggc aagaaccgat 1740 gccccagacc cagccctggc gacgcgcgag ggccgactca ggaaccatga gcggtatctg 1800 gaacggcggg cgcagcggac accattcacg ccccgcacgg gcacgttctg cttctactgc 1860 ggccagtcgg accacttcgt aagggactgc gacctgaaga cggcggactt ggctgcacca 1920 ggacgcggcg cacagaacgc gagtgccgag gatggtgatg cgggaaacga gcagcgagca 1980 taagggcctc ggccctatcg ctcgctcgtt ctgacccggg caagaaggag aagaaacgag 2040 gacgacaccg acgcggtcgg cgacggtggg cgagaacgtc tgacccaggt tcggttgggc 2100 aagacggggg acgtcgagag gccgaagacg ggagacatcg cgaggacaaa gacgaaagac 2160 gtcgcgaggg cgaaggcgga ggacgtcacg aggacgaggc tgtttcggga ggagtggtgc 2220 taggggaagc gggaggccag tctggggatg gcgccgtgcg gacagtgcgc gtgcctaccc 2280 aggctgagca agaagccacg gcggcaagga cgagcattgc ggtatcacgg gctggggatg 2340 gcgccgttcg atgagtacgg tcggtgctcg aaggtggcga gtccgtacag cggcgcgtgc 2400 gattccaggg cgacgaggac ggtgccggca cgttggtcac cggggagaag acaagcgcag 2460 tggacacggc ggcggaaggc gacgccgatg cgaagagtag cgtcgagacg gggcgtagca 2520 ccacggcgaa gcccagcgac ggtgatgtcg tggtcggtga cagagagggt ggcgtggaca 2580 gcatggagga ccggacgggc gagccgcacg gcggacccag ccgagtagtt gtcgacctcg 2640 gccaactctc aggaggactt gcggatgacg aacggcgtga cctcgtcgcc aggcaactgg 2700 acgcgtggtt gacggagatg gccaaggacg gtgacgcgca gacgaaggac gccccaacca 2760 aggtggaggc atcaccagcg gcgctggcaa ctgcgctgac tgcagagcaa agacgccacg 2820 acttgacgaa ggccaaggca ctacggaaac gcgttgctga agcgagtgtg gtggcggccg 2880 agaaggaaga ggaagcgcga cgattgcgga agcgagagaa gcggctagca cgcgataggg 2940 cgcgtcggca gaagcgactc gagcgtgagc agctcacagc ggacatggcg gtgggcagct 3000 tgatgctgac ggactccatg cccaaggagc ccgacgggag cgagaccaag ggcgaactgg 3060 cgagaggagt gacggcagag gcaccgttcc agatgcccga gccgagtgag gagttcaaga 3120 aggcgctgag gtggagcgca cgagcagcgc aagcgctcgg cgaagttcgt ggtcggaagg 3180 acgtcctgct ggacggcctg gcgaaactgg cagtggcgga ggagaaccgc cagaggaaat 3240 tgccggtgga agcatcgtgg gcgaggtgga catccgtgac ggtgcggcca agcaagtgat 3300 catggcggca gcggatctgg acgcagtgga gcgcccgacg aatggacgcg gcccgtggaa 3360 acgacaatcc gcgtctcaag aacgaggcgc agattcgaga agcgagtgcg gaaggcgaga 3420 gcgcgagagc agcgccggat ccgtgagtgg ttggccgcgc gagcgaagac agagggcggc 3480 tacgccgcgc ttggacgacg cggaggcgat gcaccgaggt tactgtcggc ggcggaggca 3540 cacgcgattg gctttgcgct gccacgcgcc accgagcaga tgaagcaagc gatcaggggc 3600 aagaagccca tgaagcagta ccgctaccat agtggcagca tctaccggca gccgagcatt 3660 ggctggatcg acgaagggac gcggccagta cgagtgggga gactacgggc agtccgtgca 3720 ccggcgacgg acacgttgcc gacggcacga gtgatgatgc gagagcagtg gtgcgacatc 3780 aagctggaca caggtgcgca atacaccgtg gccggcgagt cgtggaagcg cttgggcata 3840 cagcaggacg agctgccgcc agtggacttc gtcgaggggt tcacgggcac cgtggccaga 3900 gtgctcggag tgtggcagtt caagatggag acgcagtacg agcagacaat gtccgtgaag 3960 gcgctggtgg tcgagggcgc tgctgacgag ttcctgtcag gagaagattg gatgctgggc 4020 aacggggtga agatcgactt caccgcttgc gagatgaagt ggtacagcgg ggacatcaag 4080 aagatcgtgc cgttctcctg cacccgtgaa gggccacagg gcgattcggg tgacactggt 4140 gcgtcgggcg aagatcggca ctcggacctg tcacaacgtg gagctggcag aggcggcgcc 4200 ggagggcact acgggcgtct tcatgcccgc cccgcgcaaa gagctacaac tgttgttggc 4260 tccaacgttg acgacagtcc gaggtggtaa gatcgtagtc ccgatactca acctggtagg 4320 acgaagggcg aagctaccaa cgcgttaggt acttggcaca tgggcaccga gcagcgacga 4380 ccttaacgtg atggagctgg gcggcgcttt gagctgagac aaggtgaagg agtggctgga 4440 gcgtgagctg ggcgccaacc ccgagccgtt atgcaatgag gacgaacttg acatcgggga 4500 cataagcgca gaggacaaag agttgctatt acgagttctt aggaactacc ctgtgctact 4560 agagccgagg aaaggctgtc caccaatgac ggctttgggg gtggagcacg ccacccacac 4620 tggcaatgag gccccgatca aggtgcgacc gagaaggtat gcgcgcagtg agcaggaggt 4680 cattgataag gaggtgacga acatgctgca ggacggcgtg atcgagccca gtagtggtgc 4740 ttggggcttt ccggtagtgt tggtaaagca gaaggatggg tcggtgcggt tttgcatcga 4800 ctacagacat cttaatgcca tcactaagcg ggacgtctac ccactaccac ggatagatga 4860 tacccttgac aatctacatg gggctcggcg attcacgagc ctggaccttc acacgggata 4920 ttggcaagtc ccggcggcgg cggcagatcg cgataagacc ggcttcgtga cgaggcaagg 4980 cctgttcaga ttcgtaagaa tgccgtttgg gttagcgaat gctcctggta ctttccagag 5040 aatgatggac gcagtgttga gagggcttac ctgggagatc tgtctggtgt acttggacga 5100 cgtcatcgtc ttctcgaagg ggaacatgac gcgacacgtc gtagaacggg cgatggtgat 5160 ggagaggctg gcacaggcgg gtctatcgct gaaggccagc aagtgctcat ttgagaagga 5220 gaagctagag tacttagggc acgagttgga cgcctcgggg gtgcgcccga tggagagtct 5280 ggttgatagt gtgcgcaagt ttccggcgcc gactgatgcc aaggaggtga agcggttcgt 5340 ccacatggcg ggctactaca ggcggttcgt gcctggtttt gcgagcgtgg cagcgccact 5400 cacacggctg ttgcggaagg atgcagtgtg gcgatgggca gagtcacagc aggaggcgtt 5460 cgagcagctg aagtgtgcgt tgacggagcg accggtgctg gcctatcccg acttcacgcg 5520 ccccttcaag ctggtgacag acgcttccaa tgttggattg ggggtgacgc tgacgcagga 5580 ccaagggcag ggcgagcaac cggtggcgta cgcctcaaaa aggtcaactc acccacggtc 5640 gcaaagtaca gcatcacgga cttggagtgc gtggccgtgg tgtgggctgt gaagctgttt 5700 agaccctacc tctatgggcg taagttcgag ttggtaacgg atcatgccgc tgtaaagtgg 5760 ctcatgactt cgaaggatct cacggggcgg ctacagagat ggtcgctgca gttggaggaa 5820 tacgatttca aggttgtgta tcgaccaggg gcgagtaacg tggtcgccga cgcgctgtcg 5880 cgcgcgccgg tgcacacggt gacggcagct ggtcaaggac ctggaggaga gcaaggtgca 5940 gaggcggcag cgcagggcgg agaagggcaa gtgacggacg ctctgatccg tgagcgtcaa 6000 gcagaggaca agacggtaaa ggagctgagg cggaagggac gctacgctgg acgagatgtc 6060 gtggtggtcg gcgagttggt gcacattcgc gaggacgacg gcagtctgcg cgttgtgttg 6120 ccagcggcac tatgggccga cgtactgcga gagaatcacg actctatctt tgcgtgccat 6180 ctgcgggtgc cgcagacgta cgcaagaatc gcagcgaagt attggtggcc ggacatgagg 6240 gctcacatca gacgctgggt caggtcgtgc cgtgactgtg gcacgaggaa gtcgaaagca 6300 aaggaggtga tacctccgct acgcagccaa ggggtgggcg atgtaggtga cagatgggcc 6360 ctggatgtgg ctgggccttt gccagtgact gaaggcggaa accgctatgt cgtggcggca 6420 gtggactaca gtacgagata tgcagtagca gtggcggtgc cgagccacac tgccacgctg 6480 ttcgtcacgg aagcacacaa ccactgggac cgctggcttc cgtgcgccac ctacgcatac 6540 aatggggcac gccattctgg cacgggcttc agccccaatg agctgatgat ggggcggcgc 6600 ctgagggcac cgaacgagct gctgaggagc agcggggtaa cgcaagtcgg gccgttcgcc 6660 gactaccatc gggcgttggt ggacagcatg cagagagcaa ccgaggcggc gatggcggcg 6720 ctcgcgaaag accagcgccg gcgagccaag tactacgaca ggcgtgtgcg tcagcacgcc 6780 gagtttgatg ttggtaatcg cgtgtgggtg ctgtgcccac cacgcggaaa aggactcaca 6840 aagttgacgc atcagtgact ggggtcggca cacatcgttg tcgacgcggg cttcgacaac 6900 tggaaggtgg agcgagaaga cacgggcgag cacctgatcg tgcactgcag tttcctggtt 6960 tcctgccact gcccgagtga ctcgctcgtt agtgtggcag aacgcatact gagggagatg 7020 gcggaggagg acaacgacgt ggggtcagac gcagaggagc ccgaccagaa cgaggacgca 7080 gtggtgcggg gtggcgagga agccaccgtg gccacggcgg accagatgcc gacggcggat 7140 gggatggcgg cagtgatgga tgagaggacg agtggtagcg tggccgttga gcggtcgcgt 7200 aacgcctcca ccgaggacgt tgcggtggcg gagatgcccg ctcagacgcc aggaatagcg 7260 gcgacagatg cacgagcgtc gagatctggt gctgcgagag gcagagcaac accatcacta 7320 cgcaacaagc agcggaaacg acgagcggaa gcagatgcag aaactggagg cgaggacgcg 7380 ctcaagcgcc ggcgccagca ggaagcgaat gaagcgcgcg aagcacggcg gctcggccgg 7440 caagcggcgc gtgaaggtca agcagcggca gcagccacgc aagttggcga tggagcagat 7500 ggagcggcag ccacgacgca agaaggcggt gaggtgcaga tgctgcgtgg acgaggacga 7560 cgagcacgac cagcaccaat gccggagctc ctgcaagtgg ccacggcagg acacatcgtt 7620 gagagggcaa ggcggcgtgt gcggaacagg gctggtcgct acgagctgga gcacgatgtg 7680 gagtacggcg tcaggccggg cggaccgaca ggcaggaggt ggctcacggc ggacgagttc 7740 gagaagctgc tcgatgccgg aaagatcgag ggcgatattc cagccggggc tggcg 7795 // ID TELREP1_PC repbase; DNA; PLN; 2621 BP. XX AC AL592263; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pneumocystis carinii telomeric tandemly repetitive DNA, DE TELREP1_PC. XX KW Satellite; Simple Repeat; Repetitive sequence; TELREP1_PC; KW tandem repeat; Telomeric repeat. XX OS Pneumocystis carinii OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Pneumocystidomycetes; Pneumocystidaceae; Pneumocystis. XX RN [1] RP 1-2621 RA Seeger K., Quail M., Harris D., Hall N., Wakefield A., RA Smulian G.A., Cushion T.M., Stringer R.J., Keely P.S. et al.; RT "Direct submission."; RL Direct Submission to Genbank (10-MAY-2001). XX DR Genbank; AL592263; Positions 29922 32542. XX CC Tandem repeat: bases 1-1301 and 1302-2621. XX SQ Sequence 2621 BP; 834 A; 305 C; 918 G; 564 T; 0 other; gagagaagag agtagagagt aggatgagag atgcttcttc tgtttaaaat aaaaaggatt 60 gaattattaa gagggagaaa cgtcaattga atagatcttc tattcgtaaa aaggaggcag 120 agtaggatga gagatcattt attttaaaaa ggggtaacgt caatggaatg cgactactga 180 ggaatggtgc gtccgaggaa tggcgcttct gaggaatggc actactgagg aatggcgcgt 240 ccgaggaatg tacgcgggag tataaatagg agggaaggaa atagggtggg tggggcggtg 300 gttggtggtg gttagaaagg gttaggaagg agtagggggg ggagtagaaa aaaaaaaata 360 agagggggtg ggggagagag gagagggggg ggtcgaaagt cacgtgacgg agagagaaag 420 tcacgtgaag ataagagggg gtcacgtggc gataaaagga agtaggaagt actaagtaga 480 cgtcgattca taaagtgcta gcaccgggtt aacgtcaatt cataaagtgc tagaaagagg 540 tgaacgcaag taggaaaggt gggcgtaagt aaggttaggt gacgtctatt cacaaagtgc 600 tgcttcaggg tgaacgtaag tagaaaaggt gagcgtaagt aaggttaggt gacgtctatt 660 cacaaagtgc tccgggtagg tgtacgcaga atgtgggtca gtcagcggag ggagtactta 720 gtcggggaag tgctagaaag aggtgggcgc agaagtactg ggtgggcgta agtagggtta 780 ggtgacgtct gttcacaaag tgctagttct gggtgggcgt aagtaggaaa ggtgggtgta 840 agtagtagta ggttaacgtc tgttcacaaa gtgctagtag taggttaacg cagggtgaag 900 tgctatgaag gtaaggtcaa agtcacgtga ccagtagaag tcacgagaat aggtaggaag 960 gagttgtagt aggtaggttc gagtcctgag attacgcaga gggggcagga aacgcaaaat 1020 gaagtgctat gaaggtgggg tcaaagtcac gtgacctagg ccgaagtcac gtgatgtaaa 1080 gttgattacg taagcaagaa gtcacgtgac gtagaggaga tcacgtgaca ctgaccaaga 1140 gagcacgtga ctttgaccaa gagaacacgt gactttggaa tgaaaagata cgggaaatct 1200 gaaacaagca aacgaaagct aagaatttaa atattacgcc accaagttta ctggttaggg 1260 gggttaggtg gttagtacgt tagggttagg gttagggtta gagtaagagt agagagtaga 1320 gagtagagag tagaataaga gatacttctt ttgttttaaa taaaaaggaa tgaattattt 1380 taaaaaagaa gagagtaacg tcaattgaat agattttttc ttcgtaaaaa ggaggcagag 1440 taggatgtga gatcttttct tttaaaaagg ggtaacagaa ttggatcgat cggcacttct 1500 gaggaatgcg actactgagg aatgtacgtg ggaggaatgt acagggtaca ggaacagggt 1560 ccaggggtgc gtgggggtat aaataggagg gaaggaaata gggtgggtgg ggcggtggtt 1620 ggtggtggtt agaaagggtt aggaaggagt agggggggga gtagaaaaaa aaaaataaga 1680 gggggtgggg gagagaggag aggggggggt cgaaagtcac gtgacggaga gagaaagtca 1740 cgtgaagata agagggggtc acgtggcgat aaaaggaagt aggaagtact aagtagacgt 1800 cgattcataa agtgctagca ccgggttaac gtcaattcat aaagtgctag aaagaggtga 1860 acgcaagtag gaaaggtggg cgtaagtaag gttaggtgac gtctattcac aaagtgctgc 1920 ttcagggtga acgtaagtag aaaaggtgag cgtaagtaag gttaggtgac gtctattcac 1980 aaagtgctcc gggtaggtgt acgcagaatg taggtaagtc agcggaggga gtagtcggtc 2040 ggggaagtgc tactgggtgg gcgtagaagt actgggtggg cgtaagtagg gttaggtgac 2100 gtctgttcac aaagtgctag ttctgggtgg gcgtaagtag gaaaggtggg tgtaagtagt 2160 agtaggttaa cgtctgttca caaagtgcta gtagtaggtt aacgcagggt gaagtgctat 2220 gaaggtaagg tcaaagtcac gtgaccagta gaagtcacga gaataggtag gaaggagttg 2280 tagtaggtag gttcgagtcc tgagattacg cagagggggc aggaaacgca aaatgaagtg 2340 ctatgaaggt ggggtcaaag tcacgtgacc taggccgaag tcacgtgatg taaagttgat 2400 tacgtaagca aggaagtcac gtgacgaaga gttgatcacg tgacactgac gaagagagca 2460 cgtgactttg accaagcgag cacgtgactt tggaatgaaa agatacggga aatctgaaac 2520 aagcaaacga aagctaagaa tttaaatatt aacgtcaccc ggtatccggt tagggggtta 2580 ggtggttagt acgttagggt tagggttagg gttagggtta g 2621 // ID Gypsy-59_PIT-I repbase; DNA; PLN; 7164 BP. XX AC AATU01006438; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_PIT_; KW Gypsy-59_PIT-LTR; Gypsy-59_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7164 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006438; Positions 10007 2844. XX CC Positions [2839-3342] - Reverse transcriptase CC 'AACAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1591..3291 FT /product="Gypsy-59_PIT-I_1p" FT /translation="MQVEQRASDGPLCMSCTALLRENPSLRSEVVNTLAVE FT QGLPQSEQAVEHAFPSRNTAVEHEFPSRNTTVEHGFPSRNTAVEHEFPSRN FT TAVEHGFPSRNTAVEHGFPQHNKAVEHGFLQNTLAAEQRFPQRDSAVEQLE FT LPSSTAVVEQLTLPPATTAIEQGLSPVDGAVEHRELPRTTDTVDGAPPCLE FT GGDPSSSDSESSASSSGSRRRKKKSKRRRLRRRGQPTADIAVNESIHVLEH FT VEGGVVRSRTLDIESPPREASSITRLPGLSWKNFLRDLKSGDIEQVCLITE FT SASAEEIHTVATDNLPLRPKNAEPKSAREERFAAQSWESLRDSGNPVYDTV FT REFADVFLDKIPAELPADRGIRHEIDLTPGSKYCVTRQRPLPRDQVKAIDD FT FFESRRKADHVRESTSPHSSPTFCVKKATGGWRIVHAFNKLYDATIPAQTP FT IPRKDMVLDTMGRSVIFSTIDLTDGFYQILMRLSDVPLTAVSTPSGMLWEW FT LVMPQGLKNAPATFNRMVSHVLRPLRDFAPSYFDDIFVHSRAEGDLSATEA FT HLNHLRQVFKSCAKTNCTRT" XX SQ Sequence 7164 BP; 1492 A; 2208 C; 1928 G; 1536 T; 0 other; cctggtagca ctttgtagtc cctcccatga caatgagcca aggcaggacg tctgaaacgc 60 cagggccgac cctggatctc tctcgggtcg agtgggaagc ccttcaccgc ctcgcggcgg 120 tgtctggtga ggctgtaatc gcgtcgctgc tgagctcagc gacgtccgac caacaacgcc 180 aagcagccca agagttcatg gaacgcgagc tagccgatgc gaatcggcga gcaacaactc 240 ccgcgcgttc ctcgaaaaat gatgttgtga agctagagac gtctacctac tccggtgaag 300 gagcgaatcg cctcccgctg aactggtggt ttcgcgaggt cgacatcgcg attgcttcga 360 gaatgatcga agcgcaaggg tcaaaggtca atttgttatt gtcccggttg tccgggaagg 420 ccaaggaatg ggccctcggt aaacttgtcg ttgatcacga cgcattcccc actctggagt 480 ctctccagaa agatctcagg ctcgcgttcg agccccctca agacgagtcc cgcgtgcgtg 540 ccgagttctt cgcccttcgt caggtaaaat gactatgcgc gactacgtcc aaaagactcg 600 ccacctcgcg tcatgcatcg tgccaaatcc gattgacaca gcatcgcagg tccatgtatt 660 cgtattcggc atgcgtgaag gcatgacgcg gtactgcctg acccgagcgg aaccttcccc 720 ttcggaggag gcgatgggtc tgcccataag cgaagattcg atattgtcgg cttctaacgg 780 cgcccgagtt ctacggcgag tggtgaatca accccggatc caatgaagtt tgtcccgatt 840 tatacgtccg aatatccacg tcagtcgact ctatgtgggg ccaaccgacc ctcctaatgg 900 gccgctcacc tagttgcgct gtcgggaaga tcggtcatcc cgcggcgaga taacgcgcac 960 cagcgtcggt attcgcgcac accgcgaagt ctcacctgcc gctcagtcaa cacacggtca 1020 ggaccagtag ggtgcggtgc gccctactgg ctggaacgga ggtccgggtc cccaggtggc 1080 ttacccaaac cttctagact cccgtgctcc acgcacactt ttaatgccac caccacgtcg 1140 ggcgactcga ggctgatcat cgtcagtctt catgtcgccg gcgcccggcg accacttcgc 1200 gcactcctgg actcaggagc gtcgaataac ttctttcgcg aatcgtgctt atcgatgctt 1260 ccaagagaga tcgcagtccg taatggtcga ggtcaggtcg tcgtcaaact tgctgacgga 1320 aagccacgcc gcgttgcgtg gcgcgagatc acgttgccgt acacattcga cggcttccgc 1380 agcaacgacg acttcctcgt gattgagatg aactacgcgt tcgactgcat cttgggtatc 1440 ccgtggctgt cacgatatca accagatatt ggctggttgg ctcggtcggt ttaataccgc 1500 tctggcttcg atgtgagtga ggtgttcaca cacctcctgg ttgcccagaa ggactggccc 1560 catgtcaggg tcgtggaccg gttgtccaca atgcaggttg agcagagagc gagcgatggc 1620 cctctctgta tgtcttgcac agcgctgttg cgcgaaaacc cctcgctgcg aagcgaggtt 1680 gttaacactt tggcggtaga gcaggggctc ccgcaatccg agcaggcggt cgagcatgcg 1740 ttcccgtcac gcaacacggc ggtcgagcat gagttcccgt cacgcaacac gacggtcgag 1800 catgggttcc cgtcacgcaa cacggcggtc gagcatgagt tcccgtcacg caacacggcg 1860 gtcgagcatg ggttcccgtc acgcaacacg gcggtcgagc atggattccc gcaacacaac 1920 aaggcggttg agcatgggtt cctgcaaaac actctagcgg ctgagcagag gttcccgcaa 1980 cgcgattcgg cggtcgagca gttggagctc ccgtcatcca cagcggtggt cgagcagttg 2040 acgctcccac cggctacgac ggcgatcgag caggggctct cgcctgtcga tggcgcggtc 2100 gagcatcgag agctcccgcg cactaccgac acggtcgatg gtgcccctcc gtgtctagag 2160 gggggtgatc cctcgtccag cgatagcgag tcttctgcct cgagcagcgg ttcgagacgc 2220 cgcaagaaga aatccaagcg acgccgcctt aggcgacgtg gtcagcccac cgccgatatc 2280 gcagtgaatg agtccataca cgtcctggaa cacgtggaag gaggcgtcgt tcgctcacgc 2340 acacttgaca ttgagagccc acctcgcgaa gcttcttcca tcacacgcct tccgggtctt 2400 tcctggaaga attttctgcg cgatctgaag tcaggagaca tcgagcaggt ctgcttgatc 2460 accgagtctg cctcggcgga agagatccac accgtcgcta ccgacaatct tccacttcgt 2520 ccaaagaacg ctgagccgaa gtcggcgcgc gaagagcgct tcgctgccca atcgtgggag 2580 tcactccgcg actcgggcaa tccagtatac gacaccgtcc gcgagttcgc ggatgttttt 2640 ctcgacaaga ttccagctga gctccctgct gacagaggca ttcgccatga gattgatctc 2700 acgccgggtt ccaagtactg tgtgacgcga cagaggcccc tcccgcgcga tcaggttaaa 2760 gccattgacg acttcttcga gagccgccgc aaagcggatc acgtgcgcga gagtacctcg 2820 ccacactcga gtccgacgtt ctgcgtgaag aaggccacgg gtggttggcg cattgttcac 2880 gcttttaaca agctatacga cgccaccatt ccagcacaaa cgccgatccc tcggaaggat 2940 atggtacttg acaccatggg ccgcagtgtt attttcagca ccatcgacct gaccgatggc 3000 ttctatcaga tcttgatgcg actcagcgac gtcccgctca cagcggtgag cactcccagc 3060 gggatgctgt gggagtggct tgtcatgccg cagggcctga aaaacgcacc agccacgttc 3120 aatcgcatgg tttcccacgt tctgcgccca cttcgcgact tcgctccgag ctacttcgat 3180 gacatcttcg ttcacagccg cgctgagggc gatctcagcg ccacagaagc tcacttaaat 3240 cacttacgac aagtgttcaa gtcatgcgcg aaaacaaact gtacgcgaac ttgaagaagt 3300 gcatcgtctg tgccccggag attccggtgc ttggctgtta tgtgagcaaa aatggtgtcc 3360 gagcggatcc tgagaaggtc tcgtctattt gtgcgtggcc cacgccgcag aatcagactg 3420 aattgcttca gtggcttggc ctcgcaaatt atctccacaa gtacacgaaa aattatgctg 3480 gtctgatcca gccattgtct tcattgctga aagacatcac gtggtcgtgg actcccgaac 3540 atcagtcagc ctttaatgca gtgaagaaaa gcttggcggg ggccccatcc tggcgcttcc 3600 agatgatgca aagccattcc gcgtggttgg gacgccgagc gacctttccc ttcggcgggc 3660 cacggatggc attttggaca acgaagtttc gcaaacgcct tcttgattcc ttaccactcc 3720 agacagatga agcccgctga gaagaattat ccggttcacg acaaggaacg ccttgcgatg 3780 cgctacgcac tgatcaaatt cagagtgtac ttactcggtg agcagacatt cgcgatctac 3840 acagatcacg cgtcgctgcg aacagcgacg aagagccctc atctctctca gcgcatggca 3900 cgatggctgt aattcttctc cgagtacaac ttcgtcgttc actacaagcc aggcaagaat 3960 aacatccttg cggatgccct atctcggcag ccccgattac gatccacgcc gagatttggg 4020 ttgtcagtca ctgaagacgc gacgacgacg aatttggact gcgccacatg tgtggctgca 4080 ggtgtgaacc tgatgacggc ggtatctcca atacttcccc tgcgggaaga gatctctgcc 4140 gcgtatcgag atgactcgat atatgccggg tatcctggaa caccttcgca caccaagtga 4200 tgccacgcta aaaacactga gccgctccac gcgcaaccag attcacagat accaacttga 4260 cggtgatcta ctgatgtaca gtatcgatcg attcgatgct cctcgcgtcg ttgtccccaa 4320 cgaccccgat ctacgcgcaa gaattataca cgaattccat gacgctccag tgggttggcc 4380 acttgggccg tgagaagact ttcgcagcgg tatcccgcga cttctactgg cctcacctat 4440 acaagtgggt gcgcaagtgg gtccgctcct gcgaaacttg tcaacgcgtt aagccgtcac 4500 cgtcatcgca agctccgctg cgttctctcc ctctggcaac ataggcctgg cgctctgtgt 4560 caatggactt catattcggt ctcctacccg atactgacgg tcgtactggt gttctggtct 4620 tcgtggatcg ctttagcaag atgtgccatc tcgttccggt tccggactca atcaccgcgg 4680 gcccgatacc gcggtgctct tcgtcgacgc tgtcttccga caatcacggc cttcctgaat 4740 caatcgtctc tgaaccgcga tccccgattc acatcggcgt tctaagcaaa actcttcgac 4800 ctcctgggca ccaaactcct catgtcgacg gcaacgcacc cggagactga cgggcaaacg 4860 gaacgcgtca accgcgtgct agaagatgtt ctgcgcagtt atgccccgtc cttcgagaac 4920 tggagttcct tcctgcctct tgcgcgagtt tgcactcaac aatgccgagc acgcgtcgac 4980 gggattgact ccgttttttc gtcaacaacg cgcgtcatcc acgtgtcccc gcacaacttg 5040 ctgtgggcca acccacggcg actgatggct tcactctagg aatgtgataa ccctgcccaa 5100 ccggttccga tactggttca accaccggtt ttccggtgag tcaacggttc tgccgtctac 5160 gagttcagct attcctgcag tagacatcaa cgcggtgacg cgtttacagt cgaagaagat 5220 cctcgcaccc gccgcaatcc acgtcgtcgc cgttagttga ctggacacac cgaacgctga 5280 tcgctccagc acagccacac tcgactgtgg gtaactacgc gacgtccgaa acccccagcg 5340 cgacccgctg acaaggcagc ggtatccgac tttgtccttc atcgccaatc gggttacccg 5400 attcgtccgt gacgcgctac aactcgcggt tgacaagcag aaggaaaaac gctgacaaac 5460 gtagccgcaa aaacacaagt gcattcaaga ttggtgagcg ggtattactc tcaacggatg 5520 gaattcgtac ctctgctatt tcgaacctag ggcgcgagca aactcgcgcc gcactacatt 5580 gggccattca aagtactacg agtttatggg tgatgcctac acgctagaca ttcctacgtc 5640 gctacgacta cacccgacgt tctacgtcgg gcgacttaag aagtatcttc ccgcgatgat 5700 cccggaggcg ggacaggagc atgcgttgag cggccctcac gacgagcctg tcgagccagc 5760 gtcccatctg tcccagttcc ccgctcgcgc ggaaaagctc cactcctcgg tccgccaaac 5820 acctgcgcct ccagactacg cagtcgctgc aagagttaat gattcgactg ccgcagacta 5880 ctcgccgtcg cctcggcgtt ccaagagctc tcagccgccc gctcggcctc ctcctgtgcg 5940 tcccgagaag tgttcagcgc ctgctcaacg tcgtcctggt caaccaggtc gcgtcgaatt 6000 ccaccgcgac ggtcctccgc ccatcgttga ctcgaatgga gatacgtgct ggattgtgga 6060 ccgtattgtt gatcacgaag atcatccccg cgtgcgtcac tcgaccaagt cgtcgggctc 6120 aacacgcggg ctcccggccg cgcggaagta taaaggtacg atggcttcgg gtttcaaccc 6180 tgctgatgat acgtgggagc ctcgcgccaa cttgcttcgt tacgttcctg atgtcgtcca 6240 cgactacgac tccagcctcg agtcaaaacg cggccgcgag cgacctcgcg gcgatcgaga 6300 acgcgatcga ctacgttgcc cttcgagacg tcgaatgcgc aggagacggg ctccgtcgtg 6360 agcgttgtcg gcgcgagccg ccgcatatag ccgcttgggt gaactcggag agtgagcgct 6420 tatacttctc gatccaagcg tgttcggtcg gcatgagcgg atactcgaca atatactgat 6480 cccactcagc ttgcgtcggg cgtcgcccga tgtcacacga actgcaacct tcgcgtacgt 6540 tgacatagca caaacggtct tcggtccaag cgtcgtcgca gactttcagg cgcagatcac 6600 cgagtgaatg ctcggcttgt agggcttcgc gatcaccgag ccagccgacg acactttctc 6660 cagcctcatg catccgattc caccgtcgga tgaatgcgca ccatgatctc tgcaaagctt 6720 cgtacgtcgc gccgtcgagt gttttgttcc ggagacgcct gaagcgccga aagtggtcct 6780 gcatggtgtc caacgcgtcc ggggtcaccg ccccggacaa gtcgtacagc gcccacggct 6840 tcatatcctc gttcattatg ccgggccgaa ccccaagtca actcacgctc tcaggtgcga 6900 tatcagaggt ccacccaccg ttcagcgtcg tcgccgacgc tggagccgtc cgggttgttc 6960 cgctatctgc ctggttcgcc gcccccgtct gctgcgccat gttgttctcg tcagcgcaag 7020 ttgtatcgta ctgctcctgg gcttcgcagg agctcccgcc cgtcaagttc tcaagtgttc 7080 tcttctccgc catttcccag tttttccaga ttgttctccg atgcgcaccc ccgttaggtg 7140 attgctgtct taagaggggg gtgg 7164 // ID TPA5_LTR repbase; DNA; PLN; 322 BP. XX AC AJ439553; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pichia angusta retrotransposon TPA5_LTR, long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TPA5_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Pichia angusta OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia. XX RN [1] RP 1-322 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439553; Positions 1 322. XX SQ Sequence 322 BP; 128 A; 45 C; 48 G; 101 T; 0 other; tgttgagata ttagtctata atatgtcacg tgactatgca gagatatgca tctcctgcat 60 aaatattatg tgaaacaaat cctaatcagt gaggattaaa gataagtttc agaaagcaca 120 ctaaagattt agagtggtat tagaatctac tataaataca gttagattct ccctcatctt 180 aagtgaacat tcaattggta agatttacat ataaatctta taaatataag tttacacaaa 240 ctactgatat aaggtagtaa aaggtatatt aaattatcca aaagatgaca acttcagatc 300 agttaaagtt agcattccaa ca 322 // ID Gypsy-1_HAE-LTR repbase; DNA; PLN; 379 BP. XX AC ABWE01000216; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_HAE_; KW Gypsy-1_HAE-I; Gypsy-1_HAE-LTR. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-379 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000216; Positions 46307 46685. XX SQ Sequence 379 BP; 106 A; 74 C; 94 G; 105 T; 0 other; tgtaatgggg tcacatgtga ctggtgcgta cacaccattg ggggtgtggg ctaatacaca 60 cccacccatt atgtatccac aatacttaac tgaagatgga tactctactg gggaagtacg 120 gtactgcggg gaagtaccgt aagtgcaagc gctatgaact actgacgcgt gttatcggct 180 caaggttata tcaggaggtt attagtagga tacagaagat aggtatattc ttgttcgtta 240 ggaatgctag tagatcttta taaatataaa tcagtttaaa actaaccacg tctaggaaac 300 ttggtcccct ggacaaccgt gtgctagagc ttagttaagg aaccaacttc ctctgtgatt 360 gtgctgtgtg accccgtca 379 // ID MARS2_AI repbase; DNA; PLN; 1793 BP. XX AC X99083; XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE A.immersus rearranged methylated repeated genomic sequence, DE Mars2. XX KW Copia; LTR Retrotransposon; Transposable Element; MARS2_AI; KW copia-like retrotransposon; KW methylated ascobolus repeated sequence; internal portion. XX OS Ascobolus immersus OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Pezizomycetes; Pezizales; Ascobolaceae; Ascobolus. XX RN [1] RA Goyon C., Rossignol L.J. and Faugeron G.; RT "Native DNA repeats and methylation in Ascobolus."; RL Nucleic Acids Res 24(17), 3348-3356 (1996). XX DR Genbank; X99083; Positions 1 1793. XX SQ Sequence 1793 BP; 383 A; 420 C; 474 G; 516 T; 0 other; caacaaacca ccacccaact caatctctac gctccttgga ccttctttcc gtctcccttt 60 ccccctccgc ttcttctatt cggaccaggg ccgcggtgga tttcaagcac cccttgttgg 120 tatttggcga gaagccaggc tctgaaagca atcccatctg gattcgttac cctcacatcc 180 caagcatgga gacgttccgc gaggacaacg tagcagtgta cactggagtc aatcagccaa 240 tcaccgactg acctatcctc ttgtggcgtg ctaggcaggt agacatcgat cttcttatcg 300 tcctttgtca ttagaacaag gattgcgaac ttcgagtcga caaagaggtg tccatggtaa 360 ctcggcgaaa ccagaataca cccaagtccc taacctgctt tgctagaagg tctcgcagtt 420 gctggtggta ccaccacaca ttatcccttc gatttccgaa gagaggttgg ttggaagcct 480 tgcattcttg taatactcgt ggtggaagta ataggcaggt ttgctctcga tcagggtagc 540 taacgtagtt cgtagtgcct caatttgtcg caaatcgtcg tccgccgcaa ttattccgaa 600 gtcctccatc tgctggagaa gacaacggta aaagcaatgt ccatccgatg aaactcggtt 660 aactttatcc accgagttca atgaatacag ctcggcgaaa gcacttccgg attcatattg 720 gcgagctcag aaggtagttt tggtggattc ctggacgtcg aagtatgtgg attggttccc 780 ttgtagcacg aataaacgct tgctttccct tccttaaccc agacgttctt cttactgtcg 840 atccgatgaa acgtaacaga caggtctcca cgcactttct gggtaccttc cttcttcatg 900 tggttgtcga gttccttctt gaatgaagca accacatcca acttctcctg catcctgtag 960 ggccattcct gtacccagct ggccagtaca ctcgtgtcca cgatcatctg gagatcgtcc 1020 gagtccgaat cgttgccctt aacgtctgtc ttcgtctttt tggtgggttt ggagctggct 1080 gtagctgtcg gtggttcctt tcgtttgctg gcggggtttt ggtgctttga ggggtggttc 1140 ctttctgagc gggtggtttg gcggcgggct tttgtgtgct ttgaggggtg gttcctttcc 1200 gagcgggtgg tttggcggcg ggcttttttg tgcttggagg gggggtcggt aattgcttat 1260 tggtgtcagg gggggttcct ttccgagcgg gtggtttggc gccgatagta ttggaaactc 1320 ggctccgagt gtttggcaga tctagggcga gttagtatca accacctagc gaataagcgc 1380 agttactgtt ccaggctgtt taatcgactt ttgcaaaggt tttgaagaag gtccaggaag 1440 gtcgttcatt ttgataagaa tttctctaaa tggcaaggtg gtttgacgaa tttgagtata 1500 atatcggtgg aatagttgct ggattcaagt gaaagcgagt atgtgaagct tcgaagggga 1560 aaggcatcac ggtatatttt attcaagtga ccaccggaag ctgtactgaa aacgtcctgt 1620 actttactga aaaacgttcg gctcatacta gtaggtagcc ggtgccttat tcgggagagg 1680 catatcggga ggttcgtttg caggatagtc gctatgccgt agtgggattc tcgatttcag 1740 aggttcactg cagagtgccg ttgaaacagc attccctcga acttcacgaa ttc 1793 // ID Gypsy-9_PSo-LTR repbase; DNA; PLN; 191 BP. XX AC AAQY01000324; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PSo_; KW Gypsy-9_PSo-I; Gypsy-9_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-191 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000324; Positions 62965 63155. XX SQ Sequence 191 BP; 51 A; 44 C; 56 G; 40 T; 0 other; tgtatctgat tggtagaaag gtaataagcc aataggaggt cagtgtaggt acgactcacc 60 gtaggtatag tgaaaccaag ttaaaataga tatgcagatg tagggcggct gtggaggctt 120 cgcgaagctt ccatccgcct gaactgcggg ggcggcactc ttaggtccgc acgccctccc 180 ccaagacagc a 191 // ID NHT2_I repbase; DNA; PLN; 5432 BP. XX AC AY038360; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Nectria haematococca copia-type retrotransposon NHT2_I, internal DE region. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; NHT2_I; internal region; KW target site duplications; internal portion. XX OS Nectria haematococca OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; OC Nectria; Nectria haematococca complex. XX RN [1] RP 1-5432 RA Shiflett M.A., Enkerli J. and Covert F.S.; RT "Nht2, a copia LTR retrotransposon from a conditionally RT dispensable chromosome in Nectria haematococca."; RL Curr. Genet 41(2), 99-106 (2002). XX DR Genbank; AY038360; Positions 234 5665. XX CC 5bp target site duplications. XX SQ Sequence 5432 BP; 1645 A; 1368 C; 1180 G; 1238 T; 1 other; aatagttata agcccggtag cactttaggc gcttactata actgattccg accatcatgc 60 aagacggctt gcacggtgcc tttcactaca catcacacag cggatacaag ccctgccact 120 ctctagtctg tcgccgctct atctgcttgc ctacgggagt cgttccagcc cgtcttactg 180 cccaacacta agatttttcc aaagatgaca gccaagtcta aagtcacgct ctccagaccg 240 tccgaataga ctacctagta cgacgatttc gtctcaaggg ctaagacttc taagatcttc 300 gactttatcg atatcgataa ggatactccg atcctagaag agccaaagga gcccatttcc 360 tctaaagaaa tgcttaagct actcaacaag gctacttacg aggcttagac acacgcaaac 420 cagcagaacg ctgcggccgc tggaccgaga ccagagccgg ccatagacct gacagatggt 480 caatggatcc gactcactcg tctccagtca gaatacaagg tcaaacttac gaccttcgcc 540 aatcggcaac atgcctatgc tgaactcgct atttaggtcc gatcaaccat cgataagatg 600 tatcttagca acacgacatc taagtctaac cttcgcacta tcgtccgcga cctaaaatca 660 agccttgcac cctctgagga cgaacaaaag gaggaagcac gcttaagata ccgtcaggtc 720 ctggcccaga ccaagagggt taagccggag gactagctcg tagcttagaa taaggctaag 780 ttagaaggcg agagacaaaa gatcgctgag cttaaagggc agtctaccct taatgatttc 840 ctcattgcta tctttgcctt tgatgccact taggcaagct agcagaaggt tcagatcata 900 aataataaga agttcggcct caagatggat atcacactgc gcgcactagg ggaactgttc 960 cacgaacacg ttcgaagcac tagaataact agcaagatag ccgatagcgt atttgccgtc 1020 tctaaagcga cctaaagcca ctatccgtgc ggactaccgt cctccaaaca tcgatagaag 1080 cccattgatt gcgctgctat gtagatcgca atcaatggcg aatccaagga cggaaggcaa 1140 gccaactcca gccgcgtcaa gacctacaag gaggctctaa agcaagccaa gtggaaaagc 1200 cttatggaca cagtcaaaga ctcagcgccc accacgagga cgaaccaact agaggaaacc 1260 agaagcacca acacaaaccc acgcaaacac ggcgactttg ctagcttaac catcgatacc 1320 aatggcctcc ccagtggaac caccgacgca atcttcgcag ctttgcgaga gaagcatcct 1380 ctttataatt cgacgatcta tgacggtgga gcaactaccc atattatcaa cgataggagt 1440 ctactaaccg aaatccgcga ggctggggaa accgactacg tcataatcgg cgaaggttct 1500 ttgaaggtag aggcacaagg cacccgaagg atagaaaaca tactagatag cgaagacaga 1560 agaaatacgc gcgctcttat cctccttaat gttacgtata tgccaagatt ccacacgaac 1620 atcgtcagcg cgaaaaggct tataaggaag ggattatggc attatgggtt caataacacg 1680 ctccgaatag gcacctataa ggacaatgac atcctttgcc gactcataga ccactatgac 1740 ctcgatatag tcgaatacaa gccagtttcc cgctcttact tcaagcttct acaatcagtg 1800 atctccatat tcaacgcctt ctaagatata ttctcctcct tccaagcgaa caaaccgaga 1860 cgatatagaa tagcgatttc aagggttccg cctccgccgc ggtcggattc ttccgaaata 1920 tagcatcttc gctcttgcca tgcagggcca caagcacttg aacaacttat cttatagacc 1980 aagggagtct agatcaaggg tccgactact attcaatgca cggcctacgg cacaggcaag 2040 gcgaccgaga ttatctcccg cagggaatca tcagaccggt caaaacaacc attttaccgg 2100 atcttcatcg atatctttga gttccctacg gcattcaata gacaccgcta cgttctacta 2160 atcacagacg agttcaacgg cataatgttc tcctagtcct tggcttcaaa gacggaagtc 2220 agtaagatca tcaaggactt taaggcccga gtcaagcgac acataggtgc atcgatctat 2280 aagattagaa tcaataacga aaggactatt attaatctac cttatcaaag ggactccgag 2340 ttttagacct aggccataga ggtaggaata gatatcgaac tcccaccgtt atacactaaa 2400 gagccgacta gtagagcgga acgacctagt agaatcaatt agctacggat gcggtatata 2460 attaggtatc ttccgtaaga tctctagcta gaattctact gtgtagccac ttggatatat 2520 aatatccttc ctagccgaag aaacaaataa atattaccta aggagaaaat aaaccgctgg 2580 tttcactagc actttcgata atatagaccg ccaaatatcg atttcaatat aacaaaggac 2640 ttccgaccag actggcgagg gatttatgca tatagatgca aagcatatcc cttaaacagc 2700 cgctataagg ccgggaaaga cattaatcaa ttcaagcttg gcccacgagc acatattgga 2760 tatctcgtta gctactatgc cagcaatatc tatcatattt gggtccccaa gctcaatcag 2820 gttatcctat cccgagacat acgattcaat aagggggaat tctttgatct agagcaagag 2880 gaatagctca agacggaagc agtcgtggaa tataggctaa caccgcaggc attagagcca 2940 cttcctcagc gagactggga tacgatcttg gacgaatttc tctatgagtt cgatgactat 3000 atcttaggtt tcagcccaga cggttcaaac tcaggggtag aagacgctag aggaactaca 3060 gacaacacat cacagcctat acagcctcta tcgcaaagac ttctcatacc tctaggcgaa 3120 ccaccaattc ttccgacgcc agacccaaca ccacagctaa acaataggga cgcctcacca 3180 gcttccgggt caaccggctc gaacacctca acaccagacc cgccattgct agcagacccg 3240 agctcaccta cacaacaatc taaggctagt ctagacagtg atcttaacga atatcatgac 3300 accacgacac gaagatctac tgcgccacca ccagatggcc aattcaaaga catcaagcca 3360 agtcatgaca tttcaagttc aactaagtca cgcgatctta gtcctaaagg agtcacccgg 3420 gacataatcg tagttcaacc gctaaaccca cgccggcgac cttcctcaga aggcaacaac 3480 atgcacccgg acaagcagcc gtcaggtaac caaacaactc ctaaagctcg cggcaccacg 3540 cgcacacgcc gcagccaaaa agaactctac ggtaaccaac caactcgcaa gagcgaccag 3600 acaccaaagc caaatcggag gtataataat aatatgcaca gcgttttcac tacatagctt 3660 ccaaccgatc aacatccgaa gggaaacctc gcaacatttc atagcgtctt tctcgccgca 3720 gtctccaaga cggcacgaga ttaccgattt caccgggata accttatacg acttcctaag 3780 cgatatcagg atctagaaga ccacccaata ggtctagaat tcaaagcagc cataaggaag 3840 gagttacacg atctcctctg acgaggcacc tggagactag tcgaacgcga aaaagctcgt 3900 ggactacccc ttccgctgaa gtgggtgttt acctataagt tcgatcaaga tggctacctc 3960 taaaggtgca aggctcgcat ctgtgtccgt ggggatctyt aagacgatga tgggggaccg 4020 gaaacttatg ccgctacgct cgcagcaaag accttcagga tcataatagc aatagcggca 4080 cgattcgatc tcgagattcg ataattcgac gttggcaacg ctttcctcta tagcgacctc 4140 aagaaggacc aactagtcta cgtttagctt cctaagggat atgtggaact tggcttcctg 4200 aagccagggg aaacgtcgac tatgatcgcg gaactcgata aggccctcta cggtcttcgc 4260 gaggctctag tcctttggta taatgagatt tctgagacgc ttaaggaagt agggattgat 4320 cgtatggatg aagaaccttg cgtctttacc aacggcaaga tcctagttct catctatgtt 4380 gacgatatcc tgatccttaa cccccggcaa gaaaagaagg cagtcggcga cctcgtttaa 4440 tatctctaat ccaaatataa cctgcgcgaa gaagagttta aatggtatct tggcattaga 4500 gtcatcaggg atcgactaaa tcggaagatt tacctctgct aagacgctta tgttgagaaa 4560 atcgcacgaa aatttaagct ctgcgattca aaacttcgag tgctattaat cccgatcata 4620 acaatccctc tcgtcaagca taatagatag gcgtctaagg aagaaatcaa ggcgtattag 4680 gaacgagttg ggtctttgat gtatatcgca gttatgacta ggccggacat agcgcatgta 4740 gcagcctagc ttgcaaggtt cttgacaaac ctatcgcctg aatacctttc tgtagccaac 4800 cagtgcatcc gttacctcta cataatgaga ttccttgcca tcgtctatga tgggatgcac 4860 gcaggagagg ctcttgtgat cgcgagtgat gcgtcatttg ccgatgatat cgagacgcga 4920 tgcttatcgc agggatacat catgatacta tttaacggac cggtcgtatg gaaggctggt 4980 ctctaagata tagttatgac ttctacaacc gaagcagaaa tcttaagtct agagagaaca 5040 gccaaggaga gctacgcctt agaccgccta cttagggata tctctcttga tcttagacct 5100 ctaaagatat actgcgataa ccttcagtcg atccgacttg tggttgagga gaatcagaga 5160 attacgacga agttgcgata tgttgacgtc cagaatatgt ggctgaagta ggaattcaag 5220 aaaggtaggt ttctggtgga atatctcaag atagattaga tgccagcaga cggcttgacg 5280 aaagctctat caagatcgaa gttttaagca ctttcgatct atgctgaatc tgatagatgt 5340 taaacgggag gtggatttgg atgacggtag ttctatggct ggttgtgata gcttctagca 5400 gcgttgactt gatcactcaa cgctgggggg tg 5432 // ID Lueckenbuesser_LTR repbase; DNA; PLN; 185 BP. XX AC U90320; XX DT 06-MAR-2006 (Rel. 11.02, Created) DT 06-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Volvox carteri f. nagariensis retrotransposon Lueckenbuesser DE (LTR). XX KW Copia; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Lueckenbuesser_I; Lueckenbuesser_LTR. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-185 RA Koehl G., Putz E. and Schmitt R.; RT "Lueckenbuesser."; RL Direct submission to Genbank (2005). XX DR EMBL/GenBank/DDBJ; U90320; Positions 1 185. XX CC LTRs are identical, ORF appears to be intact. XX SQ Sequence 185 BP; 36 A; 42 C; 42 G; 65 T; 0 other; tgttgatatc tcgtccagaa ctcctgcata tcgtagtttg gcgggatacc tgtactggtt 60 ctggagcgga tttccgagat acactttgta tttatggcag ggtcttgcct tttatcctcg 120 ctctaatccc agacctatgt aacgtataac gaggtgatcg ctctgtattc gctgcttagt 180 tttca 185 // ID HAEIII_CE repbase; DNA; PLN; 173 BP. XX AC M16918; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE C.ellipsoidea repetitive element, HaeIII family, copy PstI-2. XX KW CEHAE; HAEIII_CE; HaeIII repetitive sequence. XX OS Pseudochlorella sp. CCAP 211/1A OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Chlorellales; Chlorellaceae; Pseudochlorella. XX RN [1] RP 1-173 RA Hirano H., Takeda Y. and Iwamura T.; RT "Unique repetitive sequences of 170 bp in Chlorella."; RL Plant Mol. Biol 7, 311-317 (1986). XX DR GenBank; M16918; Positions 1 173. XX SQ Sequence 173 BP; 38 A; 72 C; 43 G; 20 T; 0 other; aaacactctc accgccaccg ccccgccgcc accgctcgcc gcgccgccac cgacaaactg 60 caaccgctgc agcgctgaac acaggctgcg ccgttgatgc ccctggggtc agtgagcacc 120 tgcgaccccc ggcacagcat gtggactgtc gaatcaatgc aaacggccac aca 173 // ID Gypsy-31_PSo-LTR repbase; DNA; PLN; 883 BP. XX AC AAQY01000645; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_PSo_; KW Gypsy-31_PSo-I; Gypsy-31_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-883 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000645; Positions 10820 11702. XX SQ Sequence 883 BP; 199 A; 209 C; 323 G; 152 T; 0 other; tggcttgggg gtgacggtgg cccgagcgag ctagcaggct acggtcacca gcagcagcag 60 gagcaggttg cagttgaaga cagaagttcg ctaggagggg cgacccggag agcagcgaag 120 gacagtaagt atgagcgccg gaggggcgac acgggctccc acgacgagag gccgagaaac 180 cacgagagcg gagatgggag acgaagaggg agaggtccaa gtaggagtag gaaggcgccg 240 tgtgatagag taggaaggta ggctaagcgg ggacaacgag cggaggttga gccgctcgac 300 cctcagttgc ggtttataac tggtcagtgg tgagtcaaga ctaaatacac acaagttgcg 360 ccgacgcaca ggttcctacg ctagctggtt ctgcggctcg agggtggtcg gccaggagca 420 cgaaggagta acaacgaagg taggcgaaag tgacggacag tgcatatgag gacgacgcag 480 gcgggatccg tggggagaga ccacgggggc gcagagtaca gtgcagtcag tactctggcc 540 gtgagagata acgtctccga gcgtcgggtt cgttcgatgg cggtgacgga cgttgtctcg 600 cccacttgca tgtccggcgg gagccgccta gggcttgccg gaagtccaag gtgcccatgt 660 agctccctcc cagccgtccc tattcccgag acccgccgtg tcgttgacgg gtcagccggc 720 agctgtctga tcgtcgtaag cctcgcactt gttggcagtc ggcgttgaac cgttgaccta 780 ggtgtggacg tggtgactag tgtgctctca tgcaccgagg gcgtgtaagg aaatgggaat 840 tgggcttcgg gttaagccga gtaaactaca tggtggtcat aca 883 // ID Copia-9_PIT-LTR repbase; DNA; PLN; 254 BP. XX AC AATU01000207; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PIT_; KW Copia-9_PIT-I; Copia-9_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-254 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000207; Positions 20111 19858. XX SQ Sequence 254 BP; 66 A; 60 C; 44 G; 84 T; 0 other; tgtttaagta gcctctaaac agtttgatta ccttgaccta gtcactccaa aatattataa 60 ccagatttag gaggtcctgt ttaagtcggt atgactggct taaactatac agacactaat 120 ggctggtgta cagctattgg tggcttccta atactaataa agtactcact tcgtcttttg 180 acgcctacaa gtaacgtctt cttcctctcc ctacttcttc tcgacctgtc atacgagtta 240 tagagctggc tcca 254 // ID Copia-2_PSo-LTR repbase; DNA; PLN; 229 BP. XX AC AAQY01000388; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PSo_; KW Copia-2_PSo-I; Copia-2_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-229 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000388; Positions 42135 41907. XX SQ Sequence 229 BP; 50 A; 71 C; 52 G; 56 T; 0 other; tgtcgaagga cctctgtgtc ttatgctcgt gtccgaagta gctagtgtat ttatacagtg 60 catgtaggat caatgtggtc gctgggcttg gcactgagaa gagaaccatc cacttctgaa 120 tctccttctc ctctccaagc tccagcaacc aagctcccgg agccttaggc cccgccatcc 180 agcgttccaa ccttcctact gtgcccgtgg caatgcgcaa caaccgaca 229 // ID Copia-13_PIT-LTR repbase; DNA; PLN; 186 BP. XX AC AATU01002822; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-13_PIT_; KW Copia-13_PIT-I; Copia-13_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-186 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002822; Positions 90794 90979. XX SQ Sequence 186 BP; 49 A; 39 C; 52 G; 46 T; 0 other; tgttagaaga agatctgtaa ccgagtgtaa ccacggttac ggtttagtgg catttcgccc 60 ggccgctctc cggatgggac tactgcggaa taaggtgtga ggatgaatgg ccagaggaag 120 aagcaaggta cgagtagaat gtagttagct tcctctcact tctcaatata cgacggtttc 180 ctcaca 186 // ID Copia-1_SMo-LTR repbase; DNA; PLN; 133 BP. XX AC ADFJ01000003; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_SMo_; KW Copia-1_SMo-I; Copia-1_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-133 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000003; Positions 63704 63836. XX SQ Sequence 133 BP; 44 A; 28 C; 30 G; 31 T; 0 other; tgttacggta gcaaaccgta caatgtacgg gacagacaca gtgccagcta ggacgccagg 60 agacgcgtcg tttttggttg tatattgacc aaaatctcat gaataaaaat tcattcgatg 120 gtcaaacaca aca 133 // ID Gypsy-13_PIT-LTR repbase; DNA; PLN; 1092 BP. XX AC AATU01000362; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PIT_; KW Gypsy-13_PIT-I; Gypsy-13_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1092 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000362; Positions 37897 38988. XX SQ Sequence 1092 BP; 290 A; 277 C; 363 G; 162 T; 0 other; tgtaataggt tgagacgcac ggctcacaac gacgatgacg gccagtacga actggtcaac 60 gacagaaaga acaacgcgag gacaagagct ggagttgacg tggttgcagc acgtctggca 120 gcctggacct gcggagatgg acgaatacga tggtcaatag cggccaagga gacgaaagac 180 agcagagtgg agcccggcga gcagtcgctg gcgtgcgtcg tagaagcagc tgacaaccgc 240 agccacgagg attcgcagat ccacacggac cttaagggct ctcactttcg aatcggcggc 300 gcaagacgca actgaagcga acgaacgtgc ctacgaacaa gtgcactcgc cacagcaggc 360 gggggcacga aacgaacgaa caaaggactg aggtcgctcg aagacgcctg tagcgtggac 420 agcgagcctc gacacagaag aacgaacgac tgttgacgga cccgccgctc gggtcccgat 480 aacgaacaaa ggactgaggt cgcttgaaga cgcctgtagc gtggacagcg agcctcgaca 540 cagaagaacg aacgactgtt gacggacccg ctgctcgggt ctcgataacg aacaaaggac 600 tgaggtcgcc cgaagacgcc tgcagcgtgg acggcgagcc tcgacacaga acgagcgaca 660 gcatcggtgg acgcatcaag gctggtgaac gcgcggacga gtggacggcg gtcacggaca 720 gagtgtgcgt ggttgcaacg gcgaagtgag cctgggcaca gcacgacagt ggttgtgcgc 780 gctgactgaa gggctgcgtt gaagcaggac gggcgcctgc ggcgtaaggt ccagtggcta 840 agttagcgac ggcctagact ctggtggagt cgttgtggca gcggcgtaca ggaggacgtg 900 gacgtgagaa gctcgctcgt taacgaacga aataggaacg aaacagaaac gcaaattaat 960 aaataggtcg tgttgtctta taggcacact accggcgcgg gcgataactt atcgaccgtc 1020 tgcctgcgag tcttggacgt aatcggtact gggcgaccaa agccccgtag ctgggttcaa 1080 gaagctattg ca 1092 // ID Sola1-1_Smoe repbase; DNA; PLN; 13648 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Sola1-1_Smoe. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 13648 BP; 3564 A; 3147 C; 3178 G; 3759 T; 0 other; aagctctatt tcgttaaagt gggaattgtc attatcccac ttgtaaaata aggtttccaa 60 acctttatat agtatataaa tataacaaaa ttcaactgca ttgaggcaca tgccatttta 120 ttttaaacaa ggaaatgtct actcaatcac ttctcactgc ttcacctctc tcttctcctt 180 gtcatcgtcg tccaatttct ttccatcctt ttaatattgg ctcagttgct ccgagtctag 240 gtggagccca agtccccatt caatctttac tttcccctta ttaataaaac aacttcgtag 300 acttccaata acatgctgta aatgcaaatc ctctcaaaga attgtctttt aatattaata 360 caatggcatg gaaccccatg ccataataag ttacattttt aaataaatac atgccatctc 420 agactgttat tttttgcctc caacgcctat acaataatct tggaatttca tcactctcca 480 cactatcagg atttaaaccc aatagtaatg ccatctcttc tctaatacgt ccacgctcat 540 gttcagtggt cgaagaaccc atccggttga gcagattatg gagatgcgga tagtgcttgg 600 ctagacaata tacatgccat aaatgatgat tggtgtctgt ccgatcaaat ggcttctgat 660 ataccgttcc atctgccatt tggttgattt ctgcagccac ctcctggact ggccggttct 720 ctatcaccat cgcttcaagc cgttttgcaa ggtcccccag aacatacggt ttcttctccc 780 tagtttccat actgcaagag atggggtgca ctgcatatgt gtgcgtgttc gctgcaattt 840 taatcggcga gtcatcgatg atgaggattt cacttgacct agcagtccgg ttcatcacta 900 cagcctctgc cttgacgaag atgggcttgc tacccctcac atggaccata gtcaagcaat 960 cctcctgcgt taggagaaag tcaaatggta atattactcg cgtctgatcg tgcatcatct 1020 gtagcaacgt taatgcattg tggcgcatca tggatgtcca aactttcaat tgcaaattga 1080 acccggccct ctgttttaag tgtcgcatgg tcattattag atcccgcagt ttctcccgtg 1140 tgattaatgt gaatctgtct cttttgacca acttgcgacc gcaggctttg gagggtgcag 1200 tgacattcga ggacgagcca cgctcatggg agaaaaggac accgttcaga tcaaaaacga 1260 tacagtactt tcgccatgac tctgaaatga aatgcgtcag cataaaaaat ggtacaagtc 1320 aattttacca tctacaatat tagcgaatgg tgctcccgat ggtcgttcag agggttttgg 1380 tcgaggaaac gtgaagggcg gaaatactct cctctgcaat gtggggtcaa tcgcatccga 1440 tggcgtgtgg gcacatgcca tttcagctgt agactctggt acaactggct caacagtggc 1500 atggggtggt tccgatggcg tgtgatcaca cgccatttca gctggtgcct ccgttggcaa 1560 agtggacatg accgaacaag cagcaggggc ggtgtaggga ggttccaacg gcgcgtagtc 1620 agacgattgg gcacacgttg gaaatgagga tacgactggc tcggcggctg gggcggcctc 1680 atgcgggtcc aatggcgcct ggtcaccgtc agttggatac gtggacaaga ttgactcagt 1740 ggtatgggca gcatcaagtg gagcgtggtc agcttgcttg gcgttgatat ggatagtagc 1800 ctccaccagc tctgatgact cttgcaggca agtagagtcc actggcggat ccatatgcat 1860 gtccaaatat ctctcttcga ttgagatggt atcctcccta ctggctacta aaaacaaact 1920 cattagcaca ttgaatcgac tatactgtat ttaccatcaa ctgctattga ggaactagga 1980 ccgatatcac ttgggcgcac tgctgattct gaaggattgg acatacgttt cgacccttgc 2040 ttggcactat ccttcctcga cactaaaggc tagagtttgt atcttaattc aactgaataa 2100 tctctactta ccatttcttc tgcgtcctac atggacaatg ttagaaatgg taaaaggtta 2160 ggaatggatg tactattatt tacctgatgg tttgtcttgt ataaccttcc tccgctgctc 2220 tttggccacc tcaggctggc catcgtcgtc atcatcgtca tcgttgttat tgtgatcgtc 2280 accattgtga ggaccatcca agtcctcttc gtcctcctct tcttcgtcct cctcttcttc 2340 gtcctcctct tctttgtcct cctcttcgtc cttctgctct tcctgctcat tatctttctc 2400 tggctcctca tccccctctt gcatttcttc cataggctgc tcaggctgga ttgcttgttt 2460 ttccaagacc atcttggaaa aatcatctgg ccgagtctcc atctcaaaat acaagacatc 2520 catagcctgt tttagtgcgt gacctaggac cgtatcctca cccgactgtc ttaacatggt 2580 ttctgcacgt tcttgcaccc ttcgaagacg acgagatgag aaaaacgtgg ccctgacttg 2640 aaaaacatcc ctcatccatt gtacctctcc attgagattg gggaagggga gtccgccata 2700 ggaatctgag tcagaaggtg gtgactggct cctttcactc agcccttgat ctgcaatgaa 2760 tggcatgagc acacacgcca taatcgcgag gcattaccta tcatcttttc gttgcccttc 2820 ttccttttcg aatcaaacgc ctctgatccc gacgactgtc caacgtgctt tcgcttttta 2880 tgaccactgt cagtttgagc ttggctggtg cttgcctgtt ttgcctttga agaagtgtct 2940 cctgcaagga atggcatgag accacacgcc attgcaaata taatttgtac ctcctttttt 3000 cctattgctt gtctgtttgt ccttcttcga cgcgccacca gtgcgctttt cagtcctcgt 3060 gtctgaatat tcacaacgat ctataatcaa aatggcgtga ggcctcacgt gaccttacct 3120 tgtgcaggtt gtgacctcgg cctaacatca gtagctgtta acgccgtttc agcatctggg 3180 ggtggccaca ctcctgcata cagagcttgt gagataacat ttaaacttaa agtgcgtact 3240 caccagcttc gtagagaaga tactgttttt ctttggcaac tgtaattata tgctccattg 3300 aagtcacctc ttcaatggag tttgtcaccg caacacacgg gacacccttg agtagtgcgg 3360 ctcgaaagaa tagtccgctg cagttgtact cgacaacgca tttgcccttg gagtcacccg 3420 ctattgcgtt gaagatccag ctgagcattt cccatgctgc acctggagct ttctttggat 3480 tcgaaagctc aatagccgtc ttcagttcct caggcacggg taaattgacc tccctcagat 3540 caattcaatc ggctttgttg aacgaagctg ggaagtcact ccagtcccac tctgctgcag 3600 gaccaataac aagggcgact gtgaagatgc ggacattcgt cggtatcttc ttcttagcca 3660 ttatcccatg gatctcccgc atctccttgc ctttcaaccg agccttcacc tcgttcaagg 3720 ccttccagaa cttgtgatag gattcggagt cgtagatcat atagtggact gaagattcca 3780 cctccgcaag tcccaccatt aagtcaatga tggagctgac ttcatctgca tgagtgatct 3840 cctcgtttgt gaagtccatc acacaaaaga tgttcttgac ctgctcatct ccgcgggaaa 3900 cgatgctcct ccacctttga tcctcatccg aattcacata tagccggtaa ggttctcgat 3960 aggcctctgc tgcggggttg agctgtttct gaagccggcg gtcgacatcc ctcttaatga 4020 aatttggata ctgatccaac ttctcagctt tacttttcgt ggcatcccgc agcagatcga 4080 tgaacttggg ggcccccttc acgtactcgt cgatgtcttc atttgacaag tccagctctt 4140 ccatcatctc ttgcgtggtg tcgatgctca ccctcgccac ggccacttgc tcgaagatcc 4200 aatccttcaa tagcgcacga gctctcagag tcgtgcacaa gtcctcgtat gtcacaatat 4260 ggccgggagt cattttggtc ttgtcgaaga ctacctcacc acgtagaaga gcattagcca 4320 ctgtcagaag gtcgtcgtcg tctagagacc acgagaaacg caaggcgttg agcttcaaat 4380 cattgggctt ccggccgtcc tccacaccca ttgagtttag caactccccg tcattgtacc 4440 tccttaccac atctacccat ttgtcaaaaa caacttttgt cgcgagtaga atgttatgga 4500 tgctgagtgt gtcattgacc cccagtgttt tcgagagaag actcgagaat tcctgcaatg 4560 gaaatggcgt gaggccacat gctatgccac atgcaacgag gcttacctgc caggcactag 4620 ttgctagtgc acgtccttgt cctggttttt gtggcttctt cagttgaacc cagagcttcc 4680 gtgttcgtgc caatgtctcg tacagacccg atttgtagca cgtttcttgc ttgacattct 4740 gcgcgtggga gatgtatatg atagatcgga ggggcgagtt gccttttatc aggcggacaa 4800 ctcttgtctt gaagactttc ttcacctcct cgcccaccat aatatccaca actatctgtt 4860 gcatcgccaa gctagaatgc tgcccggaga cggcatagaa ccggatgttc tgatcgtcca 4920 acaccttcct attgatcaag tctggaaacc tcgtgtcgcc cttcattgtt cggtagtagg 4980 ggatcacgtc tgcgatgtcg ggtgttactg gacttgccag catcttctgc ttcagtttct 5040 ccacccactc atcagatact agcctgtggt tgtatttgct ttggatctcg atacggctca 5100 cgttgattgt atatactttg ttggaatagt aacaagtact attatctgcg acgatttttg 5160 ctgcctcttc ttgctctttc tgctctttgc ggctcttctt tttggtgggt gtagtgttcg 5220 aacccgaggc aatggcatca ccgagtagct tcttttttgg agcagcagag tcggacgtcg 5280 gcttgagctt gaccaccctt ttctgcttcg gggtagtttc cagatcgacc cccttcccct 5340 tcgcttcgca aactggaggc actctcaacg gctcaatgtt ggaatatagt ttttgaacat 5400 cgccgtatgt gaggtccgtg gattccatgt gatcttcata gacccgcagc gtctttgaaa 5460 ttgtgggcct cctggacaac ctctccctag ctccctctag gaattcctca tagccgctgc 5520 ccccctccgg gaagccgcta gaatgtgcaa ggtggatctt gaaggcggac gctgtctcta 5580 ccacaaatgc cagtccatat tcttgcatgg aactgcatgg agtgtctgtc acttggatga 5640 ggatccccat gcattctttt ctcccaccat ctgtgttgta cagcatcaga tcctcgcctt 5700 ccatcccgaa agtccaactg gtgagctcct cccccttctc tgcatccaca ttgacagtgg 5760 ctggaagtag aacgcaattc ctcgcctgtt cagaaatgca caacaattag agctgacaga 5820 tgaaaagcta gcagctggaa ataacatgag gccacacgcc attcaccact gcatcagatg 5880 tcttgaggct gcatcctaag atggcgtgag gctacacgcc atctgtaacc ggactgcact 5940 cgagagccca atcggtgcat gccaatgttg ctactgaatg gcatgtggcc tcatgccatt 6000 ttctacttgg tctaaaagac ttaccatttg aagccgaatg gaggccgtga caatcgaggc 6060 cggactcgct ggcgaatgtg cactgtgtgt gcagcggatc gtagcagcaa ggctactctg 6120 ccacttacag ttggagagtg gtgctgaaat ctcccgggac gccaagtggg ttgcgtgtgg 6180 gtggtggagt gggcggcgga gttggcggtg aagttacaaa ctgggtgtgt cttgaagtgg 6240 atgccgatgc acacgagcgc gatgcgagcg cgagtgtgat gcaagcgcga gtggacgccg 6300 atgcacacga gaaacctgta gagaagtgag cgtgatcgcg agtgggagcg cgatgcgagc 6360 gggagcgcga gtgtgatgcg agcgcgagcg cgagtgtgcg agcgtgagta caaagcaaaa 6420 tgcaaaacct aacctcacac gcgcgaaatg tcacaacggt tggtaatccc gccacgtcat 6480 cattcctcgg acttgggcgc caccattaat ttctggattg ccgcgcgcat gcaagcacgc 6540 aaaatccaaa agaaatccgc aacgtcatca ttcctcggac tgcatgcacg caaaatccaa 6600 aagaaagatc atgattggga tatcatttaa taccctcgct atatttatac catgcatgat 6660 tggatattcc aaagcatctt gtatttccaa aaatggcaga tgttcagcta aataaagaaa 6720 ttctatctgt ttctattttt ctttcaaatc aatattatag cgtgtgggct catgcaattt 6780 tgaaccaaag aaacccaaaa aacgttggac ccaaaatatt ttgaaaaaac ccaaaaaccc 6840 taaacatttt aaacccaaaa atccaggagt cctgtgacat tattccttga atggcgtgtg 6900 ggcgcatgcc attttcaggg ccaaatgctg aatggagaaa aattcccttt cagtgcaaat 6960 gctgcaagag gcagatgccg agcacaaagg actgtaacta cctcacatga cacagataaa 7020 cttttctcta tttggcaaag ataaacttta tagggtgtgg gctcatgcaa ttttgaaccc 7080 aaaaaatgca ccaaaaaatt ctcggcgtca tctggcatta tctcttgaat agcgtggggc 7140 tgcatgccat tttcaggggc acataggagt atattcctag gatattctga cacgcgcgag 7200 atttttttga gttttctgaa gatccaaccg ttagatcgca actagatttt acagaatggt 7260 atacaatgtc tttcttgatg accctgcaaa gaagcatctc gatcggacac cacatgagac 7320 cacacgagcc ttacaatgtt tcaggggcat ttgccataga tccgaccgtt attttgctcc 7380 aagattttac agtttggtgt gcattgacct ttccatcgaa actgcaaagg gacatcacaa 7440 tcagatgcgg gatcacaaga aactaacttc actaactctg gtttcaccaa gatctacgta 7500 aggagttatg aaatgaaagg accctctcta ttgaaatgtg tttatggtcc taggggcatt 7560 gtgacatatc aaaggatttt gcatcaagtt ctgtatttgc atgtttatca agctactgaa 7620 ttgctaaacc ctaaacccta aaccctaaac atgtggcaaa tgctgcgtga agaaagatgc 7680 cctttctggg caaatgctgt aagaggcaga tgccgagcag atgtatctca ggctagcgaa 7740 ggggacaaac gaaagctagc tataaacatg acgggatgca aatagattac taggctggtc 7800 ctgcgaaaat caaaaaccat aattgaaaac attgaaaatg caaaaagaaa ggtttataat 7860 atttttgaat tttaggcaac caaaggaatg taagtagggc atgtgtttgg aaatttaaaa 7920 atgcctcaac cacttaaatt cccaagtaaa taaagctgtt tctatttttg gtacaggtaa 7980 actttatagc gtgtgggctc atgcaatttt gaacccaaaa atgcaccaaa aaatgctcga 8040 ctagcattat tctttgaatg gcgtgtggcc ttatattgcc ataaatggac gtacacacac 8100 agcataatta ttcctttaca cagcgaataa tcttggcgcg gatcgctgac atggtatggc 8160 aaagttcaaa tcactgacat ggcacagcta gatcgaggca aggacatgat gtgacaaagt 8220 tcaacctccg acagcaaagt ctagaagcta ctcagtttaa aatttgtcag aggaatcata 8280 agatctggtt tgtcagagga tttgacgtga cgttcaagcg tgtgttattt ttgaattctc 8340 gaactcattc ctaggtctat catttttgtg cgccgtgttc ttggttccgc tgagcgcagt 8400 gagcgctgct tgtgtaagcg gcgttgtggg ctgtggttta tgcgtctacg agcggttgcg 8460 gcattgcgag cgccattgcg agcggcagtt tatgcgagtg gcagtttgtg cgagcggcgc 8520 tacgagcagt tgcggtgttg cgagcggcac tacgagtagt tgcggtgttg cgagcggcac 8580 tgtctttggt gtggctaccg cttcttcttg atattcggca cttgtgcttc ctagtatatt 8640 caccatggaa tggcttagga ccacatttag aaatggcatg aggccacatg ccatcttggg 8700 cccttgcaat ttcatggcta gcgtattgtc atgtatgttt ttacttgcct gcagctgtgt 8760 gtatatcaag atggcatgag gcctcatgcc aattttgtga ctgcgaaatt tcacgtgggt 8820 gtcaatagca tgtttgaata atggcatgtg gcctcatgct attgaggttg tttggtatgt 8880 tatgatttag gccattctcc aatcattttt tgtatggtct taacttcttt tctgcacttt 8940 cagaatggcc ttcagggttg gggaaaaggt ttacattttg aatggtggga agagagttgc 9000 aaaagggacc cttgtgtcta tggatcggaa ctttgttata cactgtcaaa ggcttgggga 9060 aggcaatgct gctgtatcag tagagactgt cttcgatggg aatgtggtcg ctattgaacg 9120 aggagagatg gtcgtcgggg taaatgttgt tgttgccttg aaaaatcttc agaagaaagc 9180 agatgttggg gacaacgcaa gtgcgacgca tgttccctcc gtggatctta agaaccgtgc 9240 tacatggatt caggcaaaag tgtttctaaa caaccccgag ggggaggtgg tagctgaggg 9300 cttagccaca gttgtcgatc caagagatgc ggttgctaat caagaattgg gctgggatga 9360 tattggagtt gcgattttag aggttgttga cacagaagaa aacaatctga ctattggaag 9420 cattgtgcgg tggaaattga ggcacttagt gtttgagaat gtgaaggatt cacaatcaaa 9480 caccactaca actgatgaca gaacatctct tcatgggaaa agaaagtaca ccttcctaaa 9540 gcgcagccaa agggatctga gcaacgaacc gaaaaggcag aaaatggcga tggaggttcg 9600 aatggtctcg acagttgctt gttgcaagag gaggtgctgt caacatgctg attgggatgc 9660 tattgaagag gagagagcaa gatacaagac attgtcctgg aaggcagctc gcaattttgt 9720 gtatgaggca ttacggtcat ctgttgatgc ttcagaacat caggtggggg gcatggtctt 9780 ccagaggggt ttggtctgca tgaaggcatg gagaatcatt tatggagtcc ctcaaaccac 9840 attctacaga atcaaaactg agttcgagga acaaagggtt caacaggcag tccatgggaa 9900 cgacggtacg cacaaaacca ggggtcatgt tgttgttgta tatggagagg caatcttcaa 9960 gatgtttgtc gagacatgta gcgagcagca accacataaa acccgcctct tggaagatgg 10020 aacacgagac acccaacgag ttctcccttc catgtatacc aagggggcca tattggaaga 10080 tgtgaatcgg gaactccaga gtaatggcta caggaagttg agccaatcta gatttagtag 10140 attgtggagc aacaggttca gggatgtgag tataggaaag tactccagct tttcaaagtg 10200 tgacgagtgc actgctatca aaatggcttt gtcgaagaat tcttgcagcg ctcaagagcg 10260 agagacgttg gttagaaggc ggctcgacca caacatcgag cagagaagct gcaggactgc 10320 atattatcat aacaggattc tctccatgga gagacctgac tcttacctct gcatcatcca 10380 cgacaaaatg gaccagaaaa agacgtgctt acctcgactc aatcctgccc ccaaggcaat 10440 ctcttcatcc atgcagctgc ctgtgtctct gtttggcata atcgctcatg ggcatggtgc 10500 ccagaactat gggaacttct ttgtacctct atggggtggc gggggtgcaa acatgatgat 10560 tgcgtcccta gcaaaacact taaggtctct gcaaaatgcg cagactgagc tgaacggcca 10620 acccttgcat aaggcccttg tcgatcgaac cccatacagg gttcagctgg aggaggagca 10680 aaggcttgca gtatcgcgtg gggccccatg ccatcccagt gaatatgttg gccgtcagat 10740 tgtagggtta tcacgtgagg cctcatgcca ttccgacgag gctggttgcc cggtgaatgc 10800 acagcctcat ccaaacgaag cagaatctca aggaagttct tgcggccgat gtggccttcc 10860 accccatctt ctgctccaaa cagacaatgc tggcagtgag aacaaaaaca tgtacgtctt 10920 cgcgtacttg gcgatgcttg ttgccaaagg catatttgaa acggttacac ttggctttct 10980 catggttggg cacactcatg aagacgtcga tgccatgttc agtcacctgg tagagtccct 11040 ccggcgatcc aatgtcctca ccctcccaca actctacgat gaattccaaa attgcatcaa 11100 aggcattgtt gaagctgcac ttctgacaga ggttccagac tttaaggggt ttgtaagagg 11160 ctacatcagg gacggatccg aaacgctgat tggccactcc aagcctcttc agtttcattt 11220 cagcatgtgt gacggtgctc cagtgatgag gtacaagatg agagaatggg acacagtgtg 11280 gctgccagtg gacggcattg aactcttcaa gagagatccc ataactgggg aacctatgat 11340 tcctcagggt tccccacggc cgatgcaccc ggatggactc aaagaccagg aaagtatagt 11400 ggccgggatt agacaacata ttgccttttg gaagaggggg ttggtgttta gtggagaatc 11460 ctattttcag aggtgcaagc ctttgctcga atactgggag aagattatat ctgctatcca 11520 gaatgggccg gttgtatatg aagaattgga agagtccttt tggccagaac ccagagcacc 11580 agatagtagc ggaacaatgt cctctggaaa tgcagtgaca gataacgatg ttgaggatca 11640 ctattgtggg ccgaggaaca agaagccgga ttcagcattc aatccagtac aggtctgcaa 11700 aggaatggtc gtgcttgtca gacccagtaa taaaaaacaa atgatatggg tggggcactg 11760 catcactgat gcagaggagg acgcggaaac taactccttc aatgtaactg tggagtggtt 11820 caagccaagt tccggatata cgaacgattg cctagaaaag agatgggtgc tgaatccaag 11880 ggatcccagc atgagcatat cggtggataa tgttgtgcat ggttggatgc ggaagcagag 11940 tgccaccatc accttgccag accatgcaag agatgcagca agagcattca taacccgggt 12000 tcaaggtgag attcattaat attcctttac taagtttcta atgtatttta tttcaaggtg 12060 aacaatccga atctgaatca gaggaggcgt gatggcatgt ggctttacgc cattcctagg 12120 tgagatgata caaataacaa gtataaattc ttagttgttc tagcaaatct tacttaaagt 12180 tcaaggtgaa caagccgaat atgaattcat cggattgtta taacaaattg cgaggtgatg 12240 gcatgaggcg atacgccatt tgagagtggt agccattcct atatgaggtg agtgaagtat 12300 ttattagaaa tacctcattc aattgtgcac ttctaagtct tggtccactt agtactgttt 12360 gcatgtttct attttaattc tttctctaaa atgttattta gcatgtggct tcatgccatt 12420 gctctccaca atcatgcatt gaatttctat ccttgcataa tacttctcca tatatatagc 12480 atgtgcgcac atgtgatatg gttcattagg cctgatatag tgtgtgaggt aaaacaaaga 12540 tgatgtgaca tatgcattta ccaatcacac gtgcataaat ctaataatat ggcgtgtggc 12600 ccatattaat ggcacataaa cccatattgt gggcttacgt gctttatgta ccatcattcc 12660 cttgcagcgt gtgtgttggt ttttttttat aacacaacga actccatatt ttagggtgaa 12720 gagcgttctc atggcaagca caaaatctgt aagtgaggca gaaaaggaga cggagaagga 12780 gataggtgaa gatgtagaat atataagtct tccaaactcc ccgtactata ctccaggtga 12840 tcatttttct gaacaaacgg caacattaac aactatcgag aacgccccag taacgtcaga 12900 gacaacaatc caaagcaaaa caactgaccc ggagaaggat gatagtaccg ctgagagtac 12960 caaaaaggag gtgtccacta gcgcttaggc ttataatggc gtgtgccctc atgccattta 13020 cttgatcacc aaataccttt ttccctttgc actagtatat cttaataccg gtctgagaaa 13080 tagaatggca tgtgccctca ggccttttac taaatcacct ttgaaagaaa tgcaagcctc 13140 tatgtcgtaa aaaaaaggta ctagagaaat tccttaataa tatgaatgtt atttagtttc 13200 atgaaaatac actaagggtc aaatgagtta aatgacttct ccagactagc aatgcctctt 13260 gctacacctt cacaattaga ttcgttagaa aaagataaca ttgaataata tctaaatgtt 13320 ttcaccatta agttatatgt ctggctaata ggaatgatgt tcatcttgga aagctcacca 13380 cacgctcaat gaacaaacaa atagtgtgtg cgcgcatgcc atcgctcttc tttagcttca 13440 gattcggctt gttcaccttg acaatgagat ttattataca actagatgga ctcagtctgg 13500 acataaggtc accgcgctag tcaccatgcc ccagatatgt ctagcccctg gacaaaaaac 13560 atataatttc acgtcatttt caaatacttg aaaatttgta cctagtccca ttttactgaa 13620 taaatcccac tttaacgaaa tagagcat 13648 // ID Gypsy-7_PR-I repbase; DNA; PLN; 4732 BP. XX AC AAQX01000737; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PR_; KW Gypsy-7_PR-LTR; Gypsy-7_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4732 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000737; Positions 50214 54945. XX CC Positions [3404-3919] - Integrase core CC 'TAATC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 49..2841 FT /product="Gypsy-7_PR-I_1p" FT /translation="MSQPQQKRSRANTAGEVADSTTVQAAMKLWTAQEPPP FT ITCFSHEALVKWKRERELYEAAATSRCQESGESPSAVIIPAIDTINKRLLK FT TFCELELKVNVAEMTNHKLIEAISQIIASTINDQVPNVHAIMSQHLRIDLK FT QKGVKARILNYFDRFEELIEENGLGNTLENNDKLKCKLLIENLRPACLKEQ FT VQLRLDIDQTAKSSVPRLFDVIKAEALKNQQSYDLYQNQTNRDKTQTKPPK FT PTVGGKQQRGVRPQQSSERPAAQAARKRDDAPARGCLHCKGTHWVSDCPTA FT TAEQKKAAVQAFMDQKKNTEASKMKRFLQADDELEPKRVAFNGVVVMPYHP FT DNGTKYNVIPRYIVEEIIQACPAAQTRRLEKPVDGKAVGGAIITCQEAIEL FT DLELLTPAGKVRMRNVTCIITETEEDEFLLGWLTLKALGIDVDEQIAALAN FT QEIIDFDPFESAIPLSFDPPDKKQIVARLCELVNEAVENGFPRERKKELFD FT VVTRYDIWRLTIGNDPPSEIEPFVIRFKDGTDPIRCKPRTYAPAERDWMKS FT FNESLVNLGWVYRNETSRWASPARPVKKPGKSGGLRQVVDFRRTNARVLPL FT AGTMPSLSTRLQHVKNKKHKQTVDFIKSFWQMALAKISQESQSYMTEDGIF FT TPTRLQQGSVDSSIHFQQSVEKIMREAKLLYEHVLAWVDDLLIYADTIDEF FT LVILDRVYSTLAKYGLFLGLNKICLYTQHAKWCGRVITPDGVAYDPEKIQT FT LIDIPEPKAAGELQQFLCAAGWMRNSLVDFARVAAPLHNRLQEALAGTKRT FT KHVAARLAITLTAEEQQSFGQVKKLLANSATLVTPDDTDELILMTDASDVG FT WSIILTVVHDWSPTTSIVEQHHQLVHCMSGTFKGASKHWSVTEKEAFPIIK FT AATELNYLLIRSKGFRPSQPHFYLCPR" FT CDS 2912..4684 FT /product="Gypsy-7_PR-I_2p" FT /translation="MIEHISGDDNVWADMISRWAQAPPPSESSSMKRLRID FT EDSEHTPQPKPAQSTQQLRPLHTDDDWPTFDEIVTAQASANAERPPHLTNS FT TDGGWHDQAGRLWIPPSAAVLLERLMVIAHCGTMGHRGVKVMINHLQEHFS FT IAKLEALARKFCARCLLCCHVKGGNIVPRPWGETYRSKERNEALHMDYLFI FT GDYNETKNYLLVLKDDFSHFCELIECTSADAATAANAILQWSSRYGTPQLL FT ISDTAAHFKNQLLDELCHKTQMTQSFTVAYCPWINGSVERLNRDILQVVRV FT MLLEWKIEQENWMTLLPLIQANLNHSPVASLANHTPAEVFMGLRAATPLQK FT VLIGKDAIANNLMDASNFTPDIQLAVDGVRSSINDMHNAITTAKEKQTKRN FT KSNQRGAQPVNFHVGDFVLWSRVDAKTHTNKLAVKWIGPFRVIGTKVSSFD FT IEHLISGATRNVHASRLKLYADSSLDINEEIIQHIANQDIYLTVDKFKRHK FT KHPSHGYEVLVGWEGLEEIEDSWEPIKNMYEDVPAKLQEYVDSSDDNALAR FT YVSNLSHKHTKTAPSRAAAKIDTQKNKNRKPCQKTKRTKKTAKK" XX SQ Sequence 4732 BP; 1350 A; 1157 C; 1214 G; 1011 T; 0 other; aagttaactt tagctgtgtc tgacaacaca cagcagcaag caacggccat gagccaaccc 60 cagcaaaagc gcagccgcgc gaacactgcc ggtgaggtcg ctgactcaac cacagtgcaa 120 gccgcgatga agctttggac ggcgcaggaa ccgccaccaa ttacatgctt ctcgcacgaa 180 gccctcgtca aatggaaacg agagcgtgag ctctacgagg ccgccgcaac ctcccgctgc 240 caggagtccg gtgaatcacc atcagcggta ataatccctg ctatagacac gatcaacaaa 300 cgcttgctga agacgttctg cgagcttgag ttgaaagtga atgtggctga gatgacgaac 360 cataagctga ttgaagcaat ctcgcaaatc atcgcgagca cgattaatga tcaagtcccg 420 aacgtgcacg ccattatgag ccaacaccta agaatcgatc taaagcagaa aggtgtgaaa 480 gctcgcattc tgaactactt tgatcggttt gaggaactca ttgaagaaaa tggcctaggc 540 aatacgctag agaacaacga caagctgaaa tgcaagttgt tgattgaaaa tctgcgtcca 600 gcctgcctga aggaacaagt gcaactgcgc ctagacattg atcaaacagc aaaaagcagt 660 gtgccacgtc tctttgacgt gatcaaggct gaagcactga agaatcagca atcgtatgac 720 ctgtatcaga accagacaaa cagggacaaa acccaaacca agccgccaaa acccacagtt 780 ggaggcaaac agcaaagagg cgttcgacct cagcagagca gcgaacgacc agcggcacaa 840 gcagctagga agcgagatga cgcaccagct cgcggctgcc ttcactgtaa aggaacacac 900 tgggtgagtg actgccccac agctacagcg gaacagaaga aagctgctgt acaagcgttc 960 atggatcaga agaagaatac tgaagcctca aaaatgaagc gctttctgca agcagatgat 1020 gagttagagc ccaagcgtgt tgcgttcaac ggagtggtgg tcatgcctta ccaccccgac 1080 aacggcacga agtacaatgt gatcccgcga tacattgtcg aagaaattat tcaggcatgc 1140 ccagcggcgc aaactcgacg tctagaaaaa cctgtggatg gcaaggcggt cggcggagcg 1200 attataacat gccaagaagc tattgagcta gatttggagc tgctgacgcc tgcaggcaaa 1260 gttcggatga ggaatgtgac gtgcattatc acggagactg aagaagatga atttcttttg 1320 ggatggttga ctttgaaggc actaggtatt gatgtggatg aacaaattgc tgctctagcg 1380 aaccaagaaa ttattgattt cgatcctttc gagtctgcca tacctctgag ctttgatccc 1440 cccgacaaga agcagattgt cgctcgtctc tgtgaactcg tcaacgaagc agtagaaaat 1500 ggtttccctc gtgagcgaaa gaaggagctg tttgatgtgg tcacgcgcta tgatatatgg 1560 agattaacca ttggcaatga ccctccatcg gaaattgagc cttttgtgat tcgttttaag 1620 gatggcacag atccaattcg ctgcaagccc aggacttacg ctccagctga gcgtgactgg 1680 atgaagagct tcaatgaatc cctggtcaat ctgggctggg tgtaccgcaa cgagacaagc 1740 cgatgggcga gtccggcgcg tcctgttaag aaacctggaa aatctggcgg acttcgacaa 1800 gtggtcgatt ttcgtaggac caatgctcga gtactaccgt tggcaggaac aatgccaagc 1860 ctaagtaccc gtttgcagca tgtgaaaaat aagaagcaca agcagacagt ggacttcatc 1920 aagagctttt ggcagatggc cctggcaaag atcagtcaag aatcgcagtc gtacatgacc 1980 gaggatggca ttttcactcc aacgcgtctg caacaaggct ctgtggattc gtccattcac 2040 ttccagcagt ctgtcgagaa aataatgcgt gaagccaaat tgttgtacga acacgtactc 2100 gcctgggttg atgacctgct aatttacgcg gacacgattg acgagtttct cgtgatactg 2160 gaccgcgtgt acagcacgct agcaaagtat ggactgttcc ttggcctcaa caagatctgt 2220 ctgtacactc agcatgccaa atggtgtggc cgtgtcatca caccggatgg agtagcttat 2280 gatcccgaga agatacagac tctgatcgat attcctgaac caaaagcggc gggtgaatta 2340 caacaattct tgtgtgctgc cgggtggatg cggaactctc tcgtggattt tgcccgagtt 2400 gcagctcctc tccacaatcg attgcaagag gcgctggctg gcaccaagcg caccaaacac 2460 gttgctgcaa gattggcgat cactttgact gcggaagagc agcaaagttt tggacaagtg 2520 aagaaattac ttgccaattc ggccacgttg gtgactcctg atgatacaga tgagctaatc 2580 ctaatgacgg acgctagtga cgttgggtgg agcattatcc tgactgttgt gcacgactgg 2640 agcccgacta caagcatcgt agaacaacat caccaacttg ttcactgcat gagtggcacg 2700 ttcaaaggcg catcgaagca ctggagtgtc acggaaaagg aagccttccc gattataaaa 2760 gccgcaactg agctaaacta cttactcatt cgctcaaaag gctttcgccc atcgcaacct 2820 catttttatc tttgcccccg gtgacgagat caaaaagcat gtgcgtggga agctacagcg 2880 atggagtcta aagctgaacg agcttcgcta catgattgag catattagtg gcgacgacaa 2940 tgtctgggca gacatgattt ctagatgggc gcaagcaccc ccgcctagtg aatcaagtag 3000 catgaagcgc ctccgtattg atgaagacag cgagcacacg ccacagccaa agccagccca 3060 atccacgcag caacttcggc ctttgcacac tgatgatgac tggccgacgt ttgatgagat 3120 tgtcaccgct caagcgagcg caaatgcaga acggccccca catctaacga atagtaccga 3180 tggtggttgg cacgaccagg ctgggcggtt gtggattccg ccaagtgctg cagtgctctt 3240 ggagcgttta atggtgattg ctcattgtgg aacaatgggc catcgagggg tgaaggtgat 3300 gataaaccac ctccaagaac acttctcgat cgccaagctt gaggctctag cacgcaaatt 3360 ttgtgctcgc tgcctcttgt gttgccatgt aaaaggtggt aatattgtgc caagaccatg 3420 gggagaaaca tatcggtcga aggagcggaa tgaagctctt cacatggatt atctcttcat 3480 cggcgactac aatgaaacta agaactattt gctcgtcctc aaggatgatt tctcacactt 3540 ttgcgagctg atagaatgca cctcagcaga tgctgcaacg gcggcgaatg ctatccttca 3600 gtggagcagc cgctacggca cgccgcaatt actgatcagt gacactgcag cccacttcaa 3660 gaaccagcta cttgatgagt tgtgccacaa gacgcagatg acgcagagct ttaccgtggc 3720 atactgtccg tggataaacg gcagcgttga acgcctaaat cgtgacatac tgcaagtagt 3780 tcgcgttatg ctactggagt ggaaaatcga gcaggaaaat tggatgacat tgctgccatt 3840 aatccaggcc aacctgaacc acagcccagt tgcctcgctt gccaaccaca cgccagcaga 3900 agttttcatg ggattacgag cagcaacacc gctacagaaa gtgctgattg gcaaggatgc 3960 tatcgcaaat aatctcatgg atgccagcaa ctttacccct gatattcaac tggcagtgga 4020 tggagtgaga agcagcatta acgacatgca caacgccatc acgactgcaa aggagaagca 4080 aacgaagcgt aacaaatcta accagcgtgg tgctcagcca gtgaacttcc acgtcggaga 4140 ttttgtttta tggtctcgtg tcgatgcgaa gacacacacc aacaagcttg ctgtcaaatg 4200 gattggtcct ttcagggtga ttggtaccaa ggtcagttcg tttgatattg aacatcttat 4260 cagtggcgcc acgcgcaacg tgcatgcgtc acgtttgaaa ctttatgctg atagcagctt 4320 ggatattaac gaagagatta tccagcacat tgcaaaccag gacatctacc ttactgtcga 4380 caagtttaag cggcacaaga agcatccctc gcatgggtat gaagtactcg tcggttggga 4440 aggccttgag gaaattgaag attcctggga gcccatcaag aacatgtatg aggacgtccc 4500 agccaaacta caggagtacg tggattccag cgacgacaat gccttggctc ggtatgtgtc 4560 caacctcagc cacaagcata cgaaaacggc accttcacgt gccgcggcca agatcgacac 4620 gcagaagaac aagaacagga agccctgtca gaaaacaaag agaacgaaga agacagccaa 4680 gaagtagctc atagctacaa gtgcagcatg cggagtttag cttggagggc ga 4732 // ID Gypsy-9_PR-I repbase; DNA; PLN; 12283 BP. XX AC AAQX01001145; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PR_; KW Gypsy-9_PR-LTR; Gypsy-9_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-12283 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001145; Positions 111684 123966. XX CC Positions [7184-7666] - Integrase core CC 'TCAC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 254..2527 FT /product="Gypsy-9_PR-I_2p" FT /translation="MDYSDAKEDDEEDDLEEKAAIPELSEAAAVSAGRSGG FT VRSLARNLTEALNEVAGPEPANGYDEDESDDHRSSAMAEDANSRPNGGRPP FT LNGDTPAANRVLGRYLELMKVKSNWMRSFAPEVVRQAIWMELGGELTVPVE FT AWNTRQVAEDTVQLLRAMGCEPQVFPSEADLRAWAPEDAATALRKWKQKLR FT SAFGVAEAGVSRPPNVRRASDPVDPSMIPLPVTPGRRPRGSTEAGIFSAKG FT ATSTYFQDSHMVTPRSVSRTERLAREAEGYRTAPTAGRSASRTPSRRYDLR FT DDSSDEDSFDVGDTGGDLTGEWARQIRELSAVENDSATPRLEIATHLPLGN FT IKPYLGLRDKSEKSMQWLRAFIYEMKGTHTPPNEWCMAFELSLQDGALHWY FT RQLPRKTRRTWKLLSDAFIKYYCSRFNQSAKARYYSAKREEKKHVCDYLNR FT LNGYARNAGVQFEHGGRDAKDHVEHFLDSCEDRGLEERLCHVRVKNIHDLE FT DMINDILRRRERKSGRESSVRRPRGQEVARRRDGGRSEDPRDGYRRDRRHR FT GDDRRREDRYRDDNRRRDDQQYRPRVTLTDALTNIVTALNAGRSVDARGGY FT PEAYNDGYDDTEEYGPESHSGDDDRYSEGYSDDGYASTEDRGHVAAANDSE FT RRNAAEGTFARADNRRPRAGNGQRPYDRDDQRRNSTGRDGRRQYGPCAACG FT GLTHSAHYCFKRCKMCKQVHDAGKCEAFQELTNLLRAKVEKKDLSPELQEL FT VYGSHLN" FT CDS 2608..3684 FT /product="Gypsy-9_PR-I_1p" FT /translation="MFAFAGVSKRPDDLNMEYVKTTENVKERGVSLGESEV FT NGRRVDGDGVELTDASILSMAKIGHPSRDLGQTIKLLSGERMGWWSSQRYD FT KRKRLRALVNGAVNDSRTRILLDTGANVSVISASYTKRLRLREVPDHGRSL FT EVRGINPGVMETRRRALVKVTLGWERVYEFEVWVMDHSAGVDVVLGTDFMI FT SAGVRLDLFHGTARLPDEVMVPLVKSQNPAEAEPYSMQVTGRPTEDLSVSG FT REWREFRLPRRRPPLTTHDVWARRIGNLVPTVTRSRRGQPTMVRLTNVSPK FT IAHCARHESVLLWVKKGDLPQGDGYTRLNSAKYEEWQVLAYAECRDETFFA FT RERNSTNDGWQISHQL" FT CDS 3989..8485 FT /product="Gypsy-9_PR-I_3p" FT /translation="MMHGITTGDGSGSENTDTNASEHLANDIELTDYAHEL FT AFLPDLTEASETVLDYSGPNVLNPSATARQQESLVAVLKRHEKIMIASGNA FT LPPPAYGVVCDIDVQGHPPIKQRARRTPLRHLRKLYELLKGLLKARLVAFS FT DSPWASPIVIVLKKNGVDIRLCIDYKLVNAVTAIMEYAMPLVDDLLTDLEA FT YLWFCSLDAASGFWAIMMTMRARKVSAFVCALGHFEWLRMPFGLKNAPMIY FT QRMIDNALWGFVQPKGGWLHFSELMRTAEAHAEVARAGVADPSSRRLEEST FT TRLTKFEADRESSVTLDAVNGLVNSPVADMFSTGEPDESSLVPVFDRRSFV FT DDICFGSETFDACLETLDRLLQRFTECRISVSFTKSIFVQPKVDFLSHEVS FT AEGIRADTKKMKAVTELPFPASKKGMQSFLGALNYYSRFIQDFAVYGAALY FT QLKDEDFTPSGSLSAAKRSFAALQQKVAEAPILRHFDRDKEVHVTLFANEW FT TLSSTLMQYHDDKLHLVRFCGRVLKDAEMNYHPAKKEVLALLLVLKVCYSQ FT LVGRTIRVYTRFSTLEWVHKSKTLFGRATHFAVMLSPWHLVVNRVKERDCT FT FAQLLQAGLTSFVELEDSLAPVTPPTKGSPTARMDPHLLYACLPRTYTGFV FT MSFDGSAKTEKNGGYGSCSWILWKLPEWTVVTAASAYLETTTVNLAEYAGM FT NNGVSAALEHGAEDLVIVGDSRLAIQQSLGVMACRKESLMVQLNRHRELTT FT KLRSVKYLHVVREFNAAADSLASEALSSKESSVASTEARKLELVELNRIGE FT VIYEPSVQTTAEEKPTVSFARAQVARGISRDRSFFDFVRDEPDYLTATTRH FT QAKARKKRVQFADETSVIEPNGTTERDEANGVTTEAQSELRAEQSSNEVDP FT GAPNAEDVDPVVIQEERRRRISAAQDEELRWSNLKAVLRGKETDLSYRAAR FT DAWKMADKFVLSEDGVLYFLGTNRRWGNERREETTMRLVVPTTMIQEVLRS FT CHDSLEGGHQGIGRTYHRVKSDYFWIGLYADAERHVKSCPDCSSSKIRPQF FT RGYSPGNVLAERPFQMVSMDFVIPLPKPRRGNSALLLFQCAFTGFVMGKAM FT SDTTALRVAQAFEECVYRRFGAPTLIRHDRDPRFMSEVFQAFAEMMQSRSR FT ATLSYRPQANGQQERSVKTVMQSVQVYAEDPLQQDWDEIAERLIFAINNSQ FT DGTRKDTPFYLVHGWDAQSTLRAMSSSLKRGFGGQTDALAWRREVNRQQEI FT SWKMAMEYQSVEKARRAREHNESLERRERAAVPNVDENETSDESQVETGAT FT SDPTVEGPRSLFHPGNRVWLYMERVKPGLTKKLAHRWHGPFRIKKKIEEFA FT YELELPDRSGYRFYPVVHVSRLKAVSEFGDRPKSRLAPEVTEDTRLDFDEE FT LLPEDSWEPDQLAGEYEVEAILDDRSPLSTGTSRAVREFKVKWIGYDEPTW FT EPASNLSCGGLLYDYLRTRRSERRLQMVQVADEN" XX SQ Sequence 12283 BP; 2908 A; 3281 C; 3817 G; 2277 T; 0 other; actggtgccg cgacccggga ttggtgtgac cttctgtgtg tcttggttgc atataggttc 60 ttaccttaac gagcattcga gagaagaaag aagatggcga aaaaagcgaa gtcagcggta 120 ccagcaacgc cggcgaggtc aagtggaacg cgtaccgagg gttcggggcg ttcctgttcg 180 ttccggttcg tcgttcgcga cgccgagtac gttggcgtcg atcaacgagc gttcggacag 240 ttttgatgag ccgatggact attctgacgc caaggaagat gacgaagaag atgacctgga 300 agagaaggca gctattcccg agctttcgga agccgctgca gtatctgcag gacgcagcgg 360 aggggtgagg tcgcttgcgc gaaacctcac cgaagcgttg aacgaagtgg ctggtcccga 420 accagccaac ggttacgacg aagatgagtc cgacgatcac cgatcgtcgg cgatggccga 480 ggatgcgaat tctcggccga atggcggccg gcctcctctt aacggagaca ccccggccgc 540 caaccgagtt ctgggtcgat acctagaact catgaaggtg aagagcaatt ggatgcgatc 600 cttcgctcca gaggttgttc gccaagccat ctggatggag ctcggtggcg agttaactgt 660 gcccgtggag gcgtggaaca ctcggcaggt ggccgaggac acggtgcaac tcctacgcgc 720 tatgggatgt gaaccccaag tgttcccgtc ggaagcagac ctccgagcat gggcacccga 780 ggacgccgct acggcgcttc gcaagtggaa gcagaagctt cggtcggcct tcggggtggc 840 cgaggcggga gttagccgtc caccgaacgt ccgccgcgca tcggatccgg tcgacccgtc 900 catgattccg ttgccagtga cccctgggag acgccccaga gggtcgaccg aggccggaat 960 tttttcggcc aagggagcga cctcgacata tttccaagac tctcacatgg tgacgccaag 1020 gtcggtcagt cgtacagaac gactggcgag agaggccgag ggatatcgaa ccgctccgac 1080 tgctggacga agtgcaagtc ggacgcccag ccgacgttac gacctccgcg atgactcatc 1140 tgacgaagat tcgttcgacg tcggagacac cgggggtgac ttgacgggag aatgggcacg 1200 ccaaattcgt gagttgagcg cggtggagaa tgacagtgcg acaccgaggc tagagatcgc 1260 cacgcacctc ccgctcggaa acatcaagcc gtacttggga ctccgcgata agagcgagaa 1320 gtccatgcag tggctccgag cgttcatata cgagatgaaa gggacgcaca cgccgcccaa 1380 cgaatggtgc atggcgtttg aattgagcct ccaagatggt gctctgcatt ggtaccgaca 1440 gctgccccgc aaaacgagac gcacgtggaa attgttgagc gatgcgttca ttaagtacta 1500 ctgttcgagg ttcaaccagt ctgcgaaggc tcggtactac tcggccaagc gagaggagaa 1560 gaagcatgtc tgcgactacc tcaaccgact taacggctat gctcgcaacg ccggagtgca 1620 gttcgagcat ggcggtcgtg atgcaaagga ccacgtcgag cacttcttgg attcgtgtga 1680 agaccgaggt ctagaagagc gtctgtgcca tgtccgagtt aagaacattc acgacctcga 1740 ggatatgatc aatgatatcc ttcgtcgcag ggagcgaaaa tctggacgcg agtcctcggt 1800 ccgccgccct cgagggcaag aggtagcacg ccgacgcgat ggtggacgct ccgaggatcc 1860 gcgggacggc tatcgccgag accgacgtca ccgaggggac gaccgtcgtc gagaagatcg 1920 ttaccgagac gataaccgtc gccgggatga ccaacaatat cgaccgaggg tcactctcac 1980 tgacgcactg accaacatag tgacagcact gaatgcggga cgctcggtgg acgcgcgtgg 2040 aggatacccg gaagcgtaca acgacggata tgatgacacc gaggagtatg ggccggagtc 2100 tcactctggt gatgacgacc gatactccga agggtactcg gacgacggat acgcgtcgac 2160 cgaggaccga ggccacgtgg ctgccgcaaa cgactctgaa cgtcgcaatg cggctgaagg 2220 aacgttcgct cgcgcagaca accgtcggcc gagggcaggt aacggccaac gcccgtatga 2280 ccgagacgac cagcgccgaa actccaccgg acgcgatggt cgacgccaat atggtccatg 2340 cgccgcctgc ggaggactca cccattcggc tcactactgc tttaagcgat gcaagatgtg 2400 caagcaggtt catgatgccg ggaagtgtga agccttccaa gaactcacga atctcctccg 2460 agctaaggtc gagaagaagg acctctcgcc ggaattgcag gaactcgtct atgggagtca 2520 tttaaactag gcagcccgcc aactgaaact gggttggtcc caatcgggct gccacagtta 2580 gccaaacctg cgctggatgc ggactatatg ttcgcattcg caggtgtgag caaacggcct 2640 gatgacttga atatggaata tgtgaaaacg acggaaaatg taaaggagag aggcgtaagc 2700 ctcggtgaga gtgaagtgaa tggacgacgt gtggacggag acggagtgga gctaaccgat 2760 gcttcgatcc tcagcatggc caaaatcggc catccatccc gagacctcgg ccagacgatt 2820 aaactgttat ctggcgagag aatggggtgg tggtcatccc agcgctatga caagaggaag 2880 cgattgcgag ccctcgtcaa tggggctgta aacgactcgc gaacgaggat tctgctggac 2940 actggagcga atgtcagtgt gatttccgcg tcatacacga aacggttgcg cttgcgcgaa 3000 gttccagatc acggtaggag tctggaggtg cgaggaatta acccaggggt gatggagacc 3060 cgcagacgag cactcgttaa agtcacgcta ggctgggagc gcgtgtacga atttgaagta 3120 tgggttatgg atcacagtgc aggagtagac gtggtcctgg gaacagactt catgatttca 3180 gccggagtcc ggttggatct gttccacggt actgcgagac taccggacga ggtaatggtg 3240 cccctggtga agtcgcagaa cccagcagag gccgagccgt acagcatgca agtgactgga 3300 cgcccgaccg aagatttgtc ggtctcaggg cgtgagtggc gagaattcag gttaccacga 3360 cgacggccgc ctctgactac tcacgacgtg tgggcacgcc ggattggaaa cctggtgccc 3420 actgtaacga ggtctcgacg agggcagccg acgatggtgc gactaacgaa cgtgtcaccg 3480 aagattgctc actgcgcgag acacgaatcg gtactgctgt gggtgaagaa gggtgacctg 3540 ccgcaagggg atggatacac tcgtttgaac tccgctaagt atgaggagtg gcaagtcctg 3600 gcgtacgcag agtgtcgaga cgagactttt ttcgcgcggg aacgcaactc tacgaacgat 3660 ggttggcaga tcagccacca gctgtagaac gacgagacta tccgacacct agcggcatcc 3720 tacctcgacc atccgacgac ttgggaggcc tagacgaggg ccagatagcg ttcgcgaata 3780 ggaacactga ggaaccgaca gaacgagacc gaatgccgtt gacgacttcg gtgcgaccct 3840 ctgacgaacc cgttggagat agatgggtcg acgaagatga cgactcggtg gcgaccgaca 3900 cctctgatgg acgtatacga gtgaagagga ctccatccca gtcctcggtg atgacccgga 3960 gacccgattg gactctgcct tcgtagcaat gatgcatggg attaccacgg gggacggctc 4020 aggtagtgag aacaccgata ccaatgcgtc cgaacatttg gcgaatgata tcgagttgac 4080 ggactatgca cacgagttgg cgttcttacc ggacttgacc gaagcctcgg aaacggtact 4140 ggattattca ggaccgaatg ttctgaaccc gagcgcgaca gcccgtcaac aagaaagtct 4200 cgttgcggtg ctgaaacgac acgagaagat aatgattgcg agtgggaatg ctctgccacc 4260 accggcctac ggtgtggtgt gcgatattga cgtacagggg catccaccca tcaaacagag 4320 agctcggaga acaccgctcc gacaccttcg gaagctgtac gagcttctga aaggcttgct 4380 gaaagctcgc ctagtggcgt tttcggacag cccatgggcg tcgcccatcg tgatcgtgct 4440 caagaagaat ggagttgata ttcggttgtg catcgactac aagctggtga atgcagtgac 4500 ggcgattatg gagtacgcca tgccgttagt cgacgacttg ttgaccgacc tggaagccta 4560 cttatggttc tgctcgcttg atgcggccag tggattctgg gctattatga tgacgatgcg 4620 ggcccgcaaa gtctcggcat tcgtctgtgc actcggacat ttcgaatggc ttcgtatgcc 4680 gtttggattg aagaatgcac cgatgattta ccaacgaatg attgacaatg ctctgtgggg 4740 tttcgtccaa cccaaaggcg gctggctcca cttttcggag cttatgcgaa cggccgaagc 4800 ccacgccgag gttgcgcggg caggggtggc cgacccttca tcgcgacgac tcgaggagtc 4860 aacaactcgg ttgaccaaat tcgaggccga ccgcgaatcc tcggtcacgc ttgacgcagt 4920 gaacgggtta gtgaacagcc ctgttgccga catgttctcc accggagaac cggatgaatc 4980 ctcgttggtg ccagtgttcg accgacggtc gtttgtcgat gacatctgtt ttgggtccga 5040 gactttcgac gcgtgcctgg agacactaga ccgactgctc caacggttca ccgaatgtcg 5100 cattagtgtg agctttacga agagtatctt cgtccagcca aaggtggatt tcctgtcaca 5160 cgaagtctct gcagaaggta ttcgagccga caccaagaag atgaaagcag tgaccgagct 5220 gccattccct gcttcaaaaa aggggatgca gtctttcctc ggtgcgctga attattacag 5280 tcgattcatc caggatttcg cagtgtatgg agcagctttg tatcagttga aggatgaaga 5340 cttcacgcct agtggcagcc tctcggcggc caagcgaagc ttcgcggcgc tccaacagaa 5400 ggttgcagag gcaccgatcc tccggcactt tgaccgagac aaggaggtgc atgtcacgtt 5460 attcgcgaat gagtggacat tgagctccac tttgatgcaa taccatgatg acaagctgca 5520 cctggttcga ttttgtggcc gagtcctcaa ggacgccgag atgaactacc acccggccaa 5580 aaaggaggtc ttagcgctac tgctggtgtt gaaagtgtgc tactcccagt tggtgggtcg 5640 gaccatccgc gtctatacgc gtttttcgac gctcgaatgg gtgcacaaat ccaagacact 5700 gttcggtcga gcgacccact ttgcggttat gttgtccccg tggcacctgg tggtcaaccg 5760 agtcaaggaa cgcgattgta cgtttgctca gcttctccaa gctggcctca caagcttcgt 5820 ggagttggaa gactcgttgg ccccagttac accgccgacg aaagggtcac ctactgctcg 5880 tatggacccc cacttgcttt atgcctgcct accgaggacc tataccggat ttgtgatgtc 5940 gttcgatggt tcggccaaga ccgaaaagaa cggtggatat ggcagttgct cgtggatttt 6000 gtggaaatta ccagaatgga ctgtagtgac ggctgcgagt gcttatctcg agaccaccac 6060 ggtaaacctc gctgagtatg ctggaatgaa caacggcgtc tcagctgcgc tcgaacatgg 6120 agccgaggat ttagtcatcg tgggagactc gagactcgca atccagcagt ccctaggggt 6180 gatggcatgt cgaaaggagt ctctgatggt tcaactgaat cgtcaccgag aactcacgac 6240 caagctgcgg tcggtgaagt acttgcacgt ggtccgagaa ttcaacgctg cagcagattc 6300 gttggcaagc gaggctctca gcagcaaaga atccagcgta gcttcgaccg aggctaggaa 6360 attagaattg gtcgagctga accggatcgg agaggtcatc tatgaaccct cagtacagac 6420 cacggccgaa gagaaaccga cagtcagctt cgcccgagcc caagtagccc gtggaatctc 6480 ccgcgacaga tcttttttcg actttgtgcg ggacgaaccc gactacctaa ctgcaacaac 6540 cagacaccaa gcaaaagcga ggaagaaacg agtccagttt gcagatgaaa cgtcggtgat 6600 agagccgaat ggtacaactg agcgagacga agcgaatggt gtgaccaccg aagctcagag 6660 tgagctgaga gccgagcaat cgagcaacga ggtagaccct ggcgctccaa acgcagaaga 6720 cgttgaccct gtggttatac aggaagagcg ccggagacga atctccgccg cccaggatga 6780 agagctgaga tggtcgaacc taaaagcggt cctccgaggc aaggaaacag acctcagcta 6840 cagagcagcc agagacgctt ggaagatggc cgacaagttt gtacttagcg aggatggtgt 6900 actgtatttt cttggaacga accgtcggtg gggcaacgaa cgccgagagg agacaacgat 6960 gcgtctagtg gtgcccacaa cgatgattca ggaagtacta cggagttgcc acgactcgtt 7020 ggaaggtggc caccaaggta tcggtcgaac gtaccaccga gtcaaatcag actatttttg 7080 gattggacta tatgcagacg ccgaacgaca cgtcaagtcc tgccccgact gtagttcgag 7140 caaaattcga ccacagttcc gaggctattc gccaggaaat gtcttagcag agcgaccgtt 7200 ccagatggtg tcgatggatt tcgtcatacc gttaccgaag cctcgtcggg gcaactcagc 7260 cctactactg ttccagtgcg cgttcacagg attcgtcatg ggtaaagcta tgtcagacac 7320 taccgctctg agggtcgcac aggctttcga ggaatgcgtg taccgaagat tcggagcacc 7380 aactctaatc cgacatgacc gagaccctcg cttcatgagc gaggtgttcc aggcctttgc 7440 agaaatgatg cagtctcggt caagagcgac cctgagctat cggccgcagg cgaacggaca 7500 gcaagagagg tcggtgaaga cggtcatgca atcggtgcag gtgtacgcag aagacccgct 7560 gcagcaagac tgggacgaga tcgcggagcg attgatcttc gctatcaaca actctcaaga 7620 tggcacccgg aaggacactc cgttttacct agttcatggg tgggacgcac aatccacgct 7680 gcgagcgatg tcgtcgtcac tcaaacgagg attcggaggc cagactgacg cattggcatg 7740 gcgccgagaa gtgaaccggc aacaggaaat ctcgtggaaa atggcaatgg agtaccaaag 7800 tgtcgagaaa gctcggaggg cgagagaaca caatgagtcg ctggagcgac gtgagagagc 7860 tgcagtaccg aatgttgatg aaaacgagac ttctgacgag tcacaggtgg agacgggggc 7920 aacgtctgac cccactgtcg aaggaccgag gtctctgttc caccccggaa acagagtttg 7980 gttgtatatg gaacgagtca agccagggtt gaccaagaaa ctcgctcacc gatggcatgg 8040 accattcagg atcaagaaaa agattgaaga gtttgcgtat gagttggaat tgccagaccg 8100 aagtgggtat agattctacc cggtggtaca cgtgtcccga ctcaaagccg tcagcgagtt 8160 cggagaccga ccgaagagtc ggttagcacc cgaagtaacc gaggatacga gactggactt 8220 cgacgaggag ttgttgcctg aagatagctg ggagccagac cagctcgctg gcgaatatga 8280 ggtagaagcc atcctcgatg accgatcccc gctgtcgacg ggcactagcc gtgctgtccg 8340 agagttcaaa gtgaagtgga ttgggtatga tgagcccacg tgggagcctg cctcaaattt 8400 atcatgtggt ggactacttt atgattatct gcgaactcga cgcagcgaac gacgattgca 8460 gatggttcaa gtcgctgacg agaactaatc tggagagcta acgagagttg aactgtctac 8520 gggggtgata cagcccgtag caacagatga aatttgctac tgtatcaaaa ttgcgagtga 8580 ccgactattg attgctacca agcctctgac gaggcctggt ggcgacgtcg gttgacgaat 8640 gaactgcctg cggggatgat gcagcccgca gtgacagacg aaagctgcta ctgcatcgaa 8700 tttgcatatt tacatgtgac gtgaacgatt ttcgaatgga attggattaa atggaattac 8760 ttggagctca agaactgccg ctacggagga ctacgggctt cggacggcac actggcagct 8820 tgagaaacga acgtgaaaat tggagggggc ctgaccgaag cctagatctc agtggtcgac 8880 gcgaggttgg ccaaaacatc caggtctgac ccttggggag cggccgacgt gttggtcggt 8940 gctggaaccg gggagtgacc aggcgaagat tcggagacgt cttcattggc ttcctcctgg 9000 ctcgattggt cgggagcacc accgacagaa gcctgggcag cccatggggc tgtcaccata 9060 gccgacgaca aggatggatc caccatcaac ccagacacca cctccgcttg cgtcattccc 9120 cgaggcacga acaaaggcac ttgggggttg cacggagcaa acgtggtgtt gaaagggtgg 9180 ctagccggcg cgtcgaccca acaattgcgc cacggttgcc tgtcatccaa cgtagccaat 9240 tcgccgagtc aatcctctga cgccggagcc cactcaatca cctcgaacga gtattggaga 9300 taagtgggct ccaacaggaa ctcggtaatc gactcgcgag gcttgccggt gcgttcaata 9360 caccactccc aacagcggta cagcatctgt tggcggatgc ggtcggcacg gaggttgcga 9420 gctttgttgt actcggtcca ggcggcacgg agagcaacga ccgatggatc ggtcacccca 9480 agtctctgtg cctcgctccg gagataagtc tcaacggcag ctacctggac ccagtggcgc 9540 cgttcccaca aggcgagacc gaggtctgct ttctccgtcc gatcggtgga ggtgccttgg 9600 aactggcgcc acatcttcac tgtgcgtgca agcccgctgg cgcgaattga gatcttggac 9660 cctggcggat tttggtccag accgaacaag caggggacct ccggcatcct ctggcgcact 9720 tgctgccaag gatgggccgg gtcggtccaa ttagccagag cccggatccc agcgaccgag 9780 catggggact cgacaccctt tgcgatgggt ggagtcacgc tctggttctg gatttggcac 9840 caggcagttt gtgcgcctgg tgccgtgaac ccaggagtca agaacgggtt cgccagcatc 9900 gacagacgct gggaatccac gctcccgggg accgtcggca cggccggagc gaacgagttc 9960 gggtccgtgc ctggagcggt cgacagcgtg gccgtgacct cggtgtgcgc acgacgcgtc 10020 acagaccgag ccaccgaaag acgtgcgcgt ggctgactag ccgacgctga agaggtctcg 10080 ggggcaccca cagccgaccc aaccggagtc gccggtgatg gaaccgacga gaccgagggt 10140 ggcgccgaaa ctggtgggct gaccgaggtc accagaacgg caggcgacgg cacaactccg 10200 ctgaccggac ccggggcaat gacaccacca ctggtgggag ccaccggggt cttaagggcc 10260 tggggagcct cggacgactg gccagagcca aggataaagt cgtccgaagc ctccagagtc 10320 tccagagcct tcatcgagcg caaattagcc agcaccgagg cactgcgcga cgggcgaccg 10380 tcatgccgcg gtggagtaat caccggcgac aaaaatggcc cggacgcagg aaccgcagcc 10440 accggaactt cggtgacgac ctcctccccc gacaagtcaa cgacttcggc cgaagatgga 10500 ggcaccgaag aatccggggc aggcgtatgc gccggagaac caggtgacgg ccccgccgaa 10560 ggactcggtg agggtgtggg ggtcgaccca ggcacgggag atgacactgg agtcgaccca 10620 gaagcgcccg agggtccacc ttgagcgcga gctcgaaggt tgaccgacgg tcggcccaac 10680 agcttgccag cggggagagc cgacttcgac ggcaagctcg gagaagagct gcgctgtcgg 10740 agacgcttgc gccggtcacg ccgacgcctg gagaccgagg ggatgagggg caagtcgtcc 10800 gactcatcgc tgtcatcccc ggcgccggca gacacctcgg ctggagcctt ggtctcgtcg 10860 ccagagtcca tggcagcatc ggggctgtcc tccgaactct cggaggacga actccgactg 10920 cgcttagagc aaatgctcgg aggcgacagc ccgagcaatt cccagtcgat gtcctctgag 10980 gtgatacctg acagaggaag catgatgagt tagatgataa gagacgaccg aacaagtgga 11040 gaccgaagac ttaccagcag aggcaaggac cagagtgtcc acgtccaagt cgtgggcggc 11100 cgagtgacgg cgcaagacag agttggctcg cttcaggctt gcattttctt cttgcagagc 11160 ctgcagctga gccggaatcg cacccgcaga ggcttgagca gacgcagcga ggtcactccg 11220 aagcttggcc agctgcgctg tgtaggcaac gaggccagct ttgaatcgct cccgatcctt 11280 ccggatcagt cgctgggcgg ccgccgccga agtctcggca gccttggcac gagccgacag 11340 gcctgccacg atgtcggcgt ggtggccgag agcagcattg gcagcgttgt ggtgccgggt 11400 gagagccacg tgatcttggc ggagctgacg caaggcatcc atggcctggt tgctgtcgct 11460 cgtcgcctgg gtgcagaaca cctcgatctt ctcacgctgt tgcacctctg tatgcaaccg 11520 atcctctgag tcggcgcact gggcctgcag ccgagcgatc tcatcccgca gagagatgat 11580 ctcctcggac tcggcgagcg agagccgagc aggtgcaaca gcagccgaca gaatctcacc 11640 gagatctgtg gcgctctcca gccgactgtc caggacagag tcgacgcgtc gcggacgctg 11700 gcgcgcaacg ccgacgacca ggtgacccag ctgcaatagc tgccgctcga tggacgaagg 11760 ttccgaaggc tcggcttgag cactacgggg tagatcaccg ccggtggggt cagtttgaca 11820 cccaaccgag acgctgtggg tcgtcggcga ccccggcggt gtcgaaacaa ccgtcggagt 11880 ggcgccaagg aggtacgcca acaccgggga agaccccagt gatgacggag gcgtgggtag 11940 gggcgaaccc tctgcaccct cgccagcaac cataggcgtg gcagtcggcg accgaggaac 12000 ggtcaccgaa gatccggcgg agccagaagc agcggatgga gtgccgctag catcctgtga 12060 acgtggacta agatggatac aagcaccgag aggtcaggca aggttcaagg agcatgaaga 12120 agaaacgaga agcaggaaac gaacctctcc ggatgcatca agggcatgaa gggcggcggc 12180 cgtagctcgg ttgagcaacg gcgagcggcg agccatcagg gcgcgaccaa gaggcgccgc 12240 gacgcgcact acttgcggaa gcttgcgtcg aggcgggggc agt 12283 // ID Copia-5_SMo-I repbase; DNA; PLN; 4451 BP. XX AC ADFJ01001740; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_SMo_; KW Copia-5_SMo-LTR; Copia-5_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4451 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01001740; Positions 59544 63994. XX CC Positions [1679-2176] - Integrase core CC 'TAGAC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 26..4441 FT /product="Copia-5_SMo-I_1p" FT /translation="MGKTRPRNEQQGYATLDRVTARLQQKKRKGKIRAVEK FT FIQDQGWSVLEIVEEMTTSKAIPIPLFTGTDFENWAKEISFLFLRDNCLRI FT VQGTEPKSAASDEDEWQVRNDKAVSTMGIGLGKLHHHHLDITKTAEENWTA FT LKNVFGNQASAEISKVELKSKLFGLKMAADETPAAFLGRLKSVLSQLSSLG FT EAVTENDKRAVLLNALVRPEFKSLKTMLKNSTKTFIEMQAALINEEEPAED FT QTPADTNTTTALFVNSKQTKNSPGKGGSASSFKAGASNTASSFRASNVGDS FT NSRERKGECNYCKRVGHYARECRDRLAGRPRGLGRKNARTGYTNQSRALMV FT RAIPEPVFVQQQDQDVIWLDTAANMHMTGRREAFLNLRKISTGRQVGLGDK FT SLLSVVAVGTVQVQLASGELRDIRNMYFVPGLAYHLFSIGAASDNGFYFIF FT NAKQAIMRDEKTDQAVAYGQRYSGLYKLDATMVVPDKQPDRALSTRASNLQ FT LWHERLGHVHEDALKAVSRDQAHAQEFEFTGKLEFCEACVLGKQARTSFPK FT FSESKSSQPLELVHTDVCGPLHVQSHRGMRYFLTFIDDYSRYTVVRLLAKK FT SEVLDHFKVYKASAENLLGKQLKTLRSDRGGEYKSRNFMKLCNESGIQQQF FT TAPDSPAQNGVAERMNRTLMESARSMLIHAGMPLSFWAEAINTATYIRNRV FT PTQPLADIPYRLWTGKQASLRHLRVFGCIAYAKVSNSHRRKLEPKSIPCIM FT VGYCLETKAYRLYNMATRSILISRDVKFDENSLYKHRYKNPETPSYVLFYE FT EDVSRASGPQPQVHGQQQPRVQQLQPQQQVEAEQQPPLEPSPVTPEQEDEA FT VTPFDDGFIFSGLFDDPEEEESPPGQPQAQPSTPGAARSQQEADPIIPGKP FT FRTITRSGRVSYLSQAAQDAQDSGLKLLSVMEQFSREPRTVCAALQSPEAG FT QWKAAMQEEYNSLIRNNVWELVSLPPGRKIVSTKWIFKRKLDATGAVTRYR FT ARFVARGFSQVPGVDYSETFSPVAKMSSIRIILRLAAYWDLEVHQLDIKTA FT FLYGELKEEVYISQPDGFIVPGQEQKVCRLKRALYGLKQSPRAWYEHMDRF FT LSSIGFKKIFADSNVYIFRSGNAFSILALYVDDNIMAARPPTIVSYFERQF FT LSQFEISATGRLSYCLGIQVLRDREAAVIELSQAHYVEEILQKFNMQDCKP FT VATPMDPGLVLSIEQSPNSEEEKAVMARVPYRQAVGCLIYLAISTRPDLGF FT AVGAVSRFLENPGEVHWSAVKRIFRYLRGTAGYRLSYRSSSSVSSSSGSSR FT SMQLVGFTDSDWAGDKDTRRSTSGYLFFLEGGLVSWSSKRQAITALSSTEA FT EYIGATTAAQEARWLTDFLEQIGVPVQQPVTLFCDNRSAIELSKNPKFHGR FT TKHFEIKVHFIREQVLANRVQLSYVSTKQMTADIMTKALSKDKFQQHREGM FT SVIDSHG" XX SQ Sequence 4451 BP; 1262 A; 978 C; 1129 G; 1082 T; 0 other; tggtatcgga gcagtcgatg atctcatggg caaaacaaga ccacgcaacg agcagcaagg 60 ctacgcgact ctagatcgcg tgactgctcg actgcagcaa aagaagagga agggaaaaat 120 ccgtgctgta gagaagttta ttcaagatca gggttggagc gtgctggaaa ttgtagaaga 180 aatgaccaca agtaaggcaa taccgatccc tctattcaca ggcacagatt ttgagaattg 240 ggcgaaagaa atttcgttcc tctttctccg ggacaactgt ctcagaattg tccaagggac 300 agagccgaag tcagcggcaa gcgacgaaga cgagtggcag gtcagaaacg ataaggcagt 360 ctccaccatg gggattggct tgggcaaatt gcaccaccac cacctggata tcacgaagac 420 cgcagaagag aactggacag ccttgaagaa cgtattcggg aaccaagcta gtgcagagat 480 ttcaaaggtt gagttaaagt ctaaactttt tggcttaaaa atggcagcgg acgagactcc 540 agcagctttt ctaggaaggc tgaagtcggt gctctcccag ctgtcaagtc taggtgaagc 600 agtcaccgag aatgataagc gagcagttct tctcaatgct ttggttcgcc cagaattcaa 660 atcactgaag actatgctca agaactcaac aaaaaccttc attgaaatgc aagcagctct 720 tatcaatgaa gaagaaccag ccgaagacca aacacccgca gatacaaaca caaccacagc 780 tttgtttgtc aattcaaagc aaacaaagaa ttctccaggt aaaggaggca gcgctagcag 840 tttcaaggct ggtgcgagca acactgcgag cagtttcagg gctagcaatg ttggagacag 900 caactcacgc gagcgtaaag gtgagtgcaa ttattgtaag cgggttggac actacgccag 960 agaatgccga gacaggttag cagggcgtcc tcgaggattg gggagaaaga acgccaggac 1020 tggttataca aaccagtcaa gagctctcat ggtaagagct attccagaac ctgtgtttgt 1080 tcagcagcag gatcaagacg tgatctggct ggacacagca gcaaatatgc acatgacagg 1140 caggcgagaa gcatttctga acctcaggaa aatttcaaca ggcaggcagg ttggtttagg 1200 agacaagagt cttctttcag ttgtagcagt gggcacagtt caagtacagc tggcctcagg 1260 agagctacga gatatcagga acatgtattt tgttccaggc ttggcgtatc atcttttctc 1320 aatcggtgca gcttctgaca acggtttcta ttttattttt aatgccaagc aggctattat 1380 gcgagacgag aagacagatc aagcagtggc ttatggacaa cgctattctg gactttataa 1440 acttgacgcc actatggttg ttccagataa gcagccagat cgagcgctct caactcgagc 1500 gagtaatctc cagttgtggc atgagcgtct aggccatgtg catgaagacg ccctcaaagc 1560 agtgtccaga gatcaagcac atgcacaaga attcgagttt acaggcaagc ttgaattttg 1620 tgaggcttgt gtgctaggaa aacaagcacg cacatcattt ccaaagtttt cagaatccaa 1680 gagcagtcag cctcttgagc tcgttcacac agacgtgtgt gggcctctcc atgtccaaag 1740 tcatcgtgga atgaggtatt ttttgacatt catcgatgac tactcacgct acacagtcgt 1800 gagacttttg gccaagaaat ctgaagttct tgatcacttt aaagtttaca aggcttctgc 1860 tgaaaatctt cttggcaagc agctcaagac cttacgcagt gacagaggtg gcgagtacaa 1920 gtcacgaaat tttatgaagc tgtgcaatga gagtggtatc cagcagcagt ttacagctcc 1980 agatagtcct gctcaaaatg gagttgctga aaggatgaac cggactctta tggagagtgc 2040 acgtagcatg cttattcacg caggaatgcc actatcgttc tgggccgagg cgattaatac 2100 agccacatat attcgcaatc gagtgcctac ccagcctctt gcagatattc cttatcgtct 2160 ttggaccggg aagcaagcca gcttgagaca tctacgagtt tttggatgca tagcttatgc 2220 gaaagtttct aacagtcatc gcagaaaatt ggagccgaag agcattcctt gcatcatggt 2280 tggctattgt ctcgagacta aagcttatcg tctttacaac atggccacca gatcaattct 2340 tatcagcaga gatgtcaagt ttgatgagaa ttctctttac aagcatcgtt ataaaaatcc 2400 tgagactcca tcctatgttt tgttttatga agaggacgtt tctagggcat ctgggccgca 2460 gccgcaagtg cacggccagc agcagccgcg agttcagcag cttcagcctc agcagcaggt 2520 cgaagcagag cagcagcctc cacttgagcc cagtcctgtc acaccggagc aagaagatga 2580 agcagttacg ccatttgatg acggcttcat tttttcaggt ttgtttgatg acccagagga 2640 ggaggagtct ccaccagggc agccgcaagc acagcctagt actcccgggg ctgcaagatc 2700 ccagcaagaa gcagatccaa ttattcccgg caaaccgttt cggactatca cacgcagtgg 2760 gagagtcagc tacttatcgc aagcagctca ggatgctcaa gactccggcc ttaaattgct 2820 gtcggtgatg gagcagtttt ctcgtgaacc acgcacagtc tgtgcagctc ttcaatcacc 2880 agaagcagga cagtggaagg ccgctatgca ggaggagtac aactccttga tccgtaacaa 2940 cgtttgggag cttgtttctc ttccaccagg caggaaaatc gtcagtacca agtggatatt 3000 caagcgtaaa ttggatgcca ctggagcagt gactagatat cgagctcgct ttgtagcgag 3060 aggatttagt caagtacctg gcgtggatta ttctgagact ttttcgccag tggcaaaaat 3120 gtcttctata cgaattattc tacgtcttgc agcatattgg gatctggaag tgcatcagct 3180 tgatatcaag acagcgttct tatatggcga gcttaaggag gaagtctata tttctcagcc 3240 agatggattt attgttccag gacaggagca gaaagtatgt cgacttaagc gcgcactata 3300 tggcttaaag cagtctccta gagcatggta cgagcacatg gacaggtttc tttcttccat 3360 tggctttaag aagatttttg cggatagcaa cgtgtatatt tttcgctctg gaaacgcatt 3420 ttctatttta gcgctatatg tcgatgataa tattatggca gcacgtccgc caacaatcgt 3480 cagctatttt gagcgacagt ttttatctca gtttgagatt tccgcgactg gacgtctttc 3540 ttattgcctt gggatccagg tgcttcggga cagagaagca gcagtcatcg agctctctca 3600 agcacattat gttgaagaaa ttttgcagaa gttcaacatg caagattgca agcccgtggc 3660 aacgccaatg gatccaggtc ttgtgctgtc tattgagcaa agtcccaact ctgaggagga 3720 gaaagcagtg atggcgagag ttccatatcg acaagcagtt ggatgcctta tttatctagc 3780 catcagtacc agaccagact tgggatttgc agttggagca gtctcaagat ttcttgagaa 3840 tccaggagaa gtgcattgga gcgctgttaa acgaattttc aggtatttgc gaggaacagc 3900 aggatatcga ctgagctaca gaagcagtag cagtgtgtct agcagcagtg ggagctccag 3960 gagtatgcaa cttgtcggct ttacagactc agattgggct ggcgacaagg ataccagaag 4020 atcaacctca ggatatcttt tcttcctgga aggtggactt gtcagctgga gcagcaagcg 4080 acaagcaatc acagcacttt catccaccga agctgaatat attggtgcaa caacagcagc 4140 tcaagaagcg aggtggctta cagattttct ggagcagatt ggtgttccag tgcagcagcc 4200 agtgactttg ttttgtgaca atcgaagcgc gatcgagttg tcgaaaaatc cgaagttcca 4260 tggccgcacc aaacacttcg agataaaggt acattttatt cgagagcagg ttctagcgaa 4320 cagagtgcag ctgagctatg tttcgacgaa gcagatgaca gcagacatta tgacaaaagc 4380 tttgagcaaa gataagtttc aacaacatcg tgaaggtatg agcgttatag actctcacgg 4440 ctgagtggga g 4451 // ID Gypsy-5_PSo-LTR repbase; DNA; PLN; 360 BP. XX AC AAQY01000371; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PSo_; KW Gypsy-5_PSo-I; Gypsy-5_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-360 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000371; Positions 14325 13966. XX SQ Sequence 360 BP; 101 A; 98 C; 80 G; 81 T; 0 other; tgtagtgcag gcaatctcca gcctgcccca gctagcagca gtactattgg tcgcagtcaa 60 tcacggcaaa cgtgatgact gcgacaatga atcttgcgga taacgcaaag taagattaca 120 gtgccccgtg cataacggga tcctgatgat caggcagaaa tcaagcgaac tataacaaac 180 tagatgccca tttaacgaca acttagatga cggcaactgt agctccactg gttagcagga 240 gccgcagcat taggagtagc tcgtgtcctc actttgactt ttaccaagta atacacttcg 300 gccacacttt cagggagctc cgccagctcc catccgtgtc ttcattctgc agacactaca 360 // ID Gypsy13-I_VC repbase; DNA; PLN; 6373 BP. XX AC scaffold_52; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13-VC; KW Gypsy13-LTR_VC; Gypsy13-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6373 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 122-122 (2008). XX DR Genome; scaffold_52; Positions 581534 587906. XX CC 'GTGT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 5011..6366 FT /product="Gypsy13-I_VC_1p" FT /translation="MPTGRRSIVVPCEPQLRQELIDRCHGGPMGGHPGVAR FT TLELVQRHHWWPGITADIESFVRCCDKCQRNKTLSGRQHGLLQPLPIPDMP FT WDSVSMDFVVGLPRTQRQHDAIFVVVDRLTKMAHFVPTNTHVTAEKTAELF FT LANVVRLHGLPKTTVSDRGPQFAGMFWQHMARMIDLRSDLSTAFHPQTDGQ FT TERMNRVLADMLRNYCDGSPSTWDKVLSLAEFAVNNSVNRSTGQTPFFLNY FT GYHPATPTVRELDVTVPTAKAFVQTMDQRLADAKRCLLAAQSRTEQHYNAK FT KRDVLFEPRQLVLLSTKNLRLRGKGIRKLTPRWCGPFEVEQMVGNVAVKLK FT LPSNLKIHNVFHVSLVKPYRTDGTFQPLPVEQLPEEFSEDTTYPIDRVLDY FT RRRKVGRKYVDEYLVKWKGFESEHNSWEPADHFTPDMAAELQFIKSRSRED FT TTPKRRG" FT CDS join(227..1117,1121..3088) FT /product="Gypsy13-I_VC_2p" FT /translation="MASGSSGNPGGFNLASWQWGAGWGPAQNAAAPGGVNL FT NIPFQQVADAAAAPAAAAAPAAGEAGAAAPPLAPVVPVPVAPVGQPVIPIA FT GAPAAGAMPDPAQPVAVPAAVAVAQLPDAQMAPPSFAAAVAAPAPVHAGPV FT QAPPVAAPIQPANAGVGRGAGGRGRGGGRGGGPAGRMAGRNGPGGGRGQGG FT RGNVNPGRGRGARGGAAAGRGAEAAGRGAGRMVQGEWQQVMGRKRQRVNLA FT LSNKPAPGGGYLPKAQIELAMSLHGCWVCLGLDHTYHNCPRWNEDAGAGGA FT GGTVAGVAPPRFVRRPDGNCLWSKYWQGLGRSVHESEVASIVTTVGREFTL FT DACASDCGLSAVCNAFSCTARPCLDTNVAGHTVWMAPNAADLPAYVTQYRA FT CKPLAPQSTAACILVPSGTEPSLLKGMKLVRRYPVGTSLFYVPDVQGSRAL FT LPPITEVMEVWYDGPDSTEEIPACMAFGKAVPHLAVKISGSTFIAMLDSGA FT THSFVSEALVRLLHLHVLPSTFTYVRLADGGMSPIVGQTMLKVRVGPVRLV FT VPALVMKGLPTSADLILGANILEQSRMRIDFDTRVVTLRKGTQEFRRTYSH FT GKEDPSKDQRPKHHVIMTMQARAECLSINRTQAKNMMRKGAHVLLVRPRLT FT AGAVVRAAATRGSGGPDVPTTSAAEVKVTDPEIAALLERYQDIFADITEPP FT PERLVTHTIPLVEGAQPVARPLYRLTPNELEEVKRQVEDLLRKGMIRPSSS FT PWAAPILFVAKKDGTLRMVVDYRGLNAQTVKNRYPSPRIDDLVDSLGGSTV FT YSSIDLQQGYNQIRIRNEDVPQTAFRTPLGHYEYVVLPFGLTNAPATFQTV FT MNRVMEPFIGRFVVVYLDDILIHSRSREEHLRHLEQVFEVLRRERLHAKAS FT KCHWAQTELEYLGHIISTSGVRPDPKKVRVVRDWPLPKGVFPVRIKARD" XX SQ Sequence 6373 BP; 1560 A; 1546 C; 1698 G; 1569 T; 0 other; gatttggtat cgagaccata ggtccatggg acagcggcag tccctcattc cgggccgcat 60 tgatagggag tgcgaacatt tcgcacgtct gactatctct cccagtaagt aacttcttac 120 tgcaagtaag ttgttcgatt agctgtcccg gtgagcaaga tcctactgta ttgtagtgaa 180 cgggacaggc ggaacaaacg accccggtgg gtcactcgac gtcgctatgg cgtcaggctc 240 ctcagggaac ccaggtgggt tcaaccttgc cagttggcaa tggggcgcag gttggggccc 300 ggcgcagaat gctgccgcac caggtggagt taacctgaat atcccctttc agcaagttgc 360 tgatgccgca gctgcgcctg ctgctgctgc tgcccctgca gcgggtgagg ctggcgctgc 420 cgctcccccg ttggcacccg ttgtgcccgt gcccgtcgca cctgttggtc aaccagtaat 480 ccctattgct ggagcacccg ccgctggcgc aatgccagac cccgcacagc ccgttgctgt 540 gccagcagct gttgcggtcg cacagctccc ggatgcgcag atggctccac cttcctttgc 600 tgctgctgtg gcggcacccg ctccagtaca cgctggacct gtccaggcgc cgcccgtcgc 660 tgcccctatt cagccggcca acgcgggtgt gggccgtggt gctggaggcc gtggccgggg 720 tggtggacgt ggtggtggcc cagcaggccg catggccgga cgcaatggtc caggtggggg 780 tcgcggacag ggaggccggg gtaatgttaa cccgggtcga ggccgtggtg cccgaggagg 840 agccgccgca ggtcgcggtg cagaggctgc cggtcgcggt gcgggccgaa tggtccaggg 900 cgaatggcaa caagtgatgg gacggaagcg tcagcgggtg aacctggcac tgtctaacaa 960 gccagcgcct ggtggggggt acctaccaaa agcgcagatt gaactggcga tgtccctcca 1020 cggttgctgg gtgtgcctgg gtttggatca cacctatcac aactgtcctc gttggaacga 1080 ggatgctggc gccggtggtg ccggtggcac tgttgcctag ggagttgccc ctccgaggtt 1140 cgttcggcgc ccggatggga attgtctttg gtccaagtat tggcagggtt tgggacgatc 1200 agtgcacgaa agcgaagttg ctagtattgt aaccactgtg ggccgagagt tcactttaga 1260 tgcatgtgca tcagactgcg gcttgtctgc cgtatgtaac gctttctcgt gtacagcccg 1320 cccatgcctt gataccaacg ttgccggaca tacagtctgg atggctccga atgcagctga 1380 cttgcctgcg tacgtaacgc agtatcgtgc ctgtaagccg ctggctccac agtcaacagc 1440 agcttgcata ctagttccta gtggaacgga accatctttg ttaaaaggca tgaaattggt 1500 acgacgatac ccagtgggta cctctttgtt ttacgtacca gatgtacaag gaagccgcgc 1560 gcttcttcct cctattactg aagttatgga ggtatggtat gatggtccag acagcacgga 1620 agaaatccct gcctgtatgg cttttgggaa ggctgttcct cacctagcag tgaagatttc 1680 agggtctacg tttatagcca tgttggattc gggagctacg catagcttcg tttccgaggc 1740 gctggtgcgt cttcttcatc ttcacgtgct accctcaacc ttcacgtacg tacggttggc 1800 ggatggtgga atgtccccca tcgttggtca aacgatgctg aaggtgagag tgggaccggt 1860 gcggttggta gtacctgccc tagtgatgaa ggggttgcca acctcggctg atctgatctt 1920 aggtgcgaat atcttagagc aaagtcgaat gcgaatcgat tttgacacca gagtggtaac 1980 actccggaag ggtacgcaag agtttcgtcg tacctattcg cacggaaagg aggatccttc 2040 caaagatcag cgcccaaaac atcacgttat catgacaatg caagccaggg cagagtgctt 2100 atcaattaat cgcacacagg cgaaaaacat gatgcgaaag ggagcgcacg tgttattagt 2160 ccgtccgcgg ctaactgctg gcgcagtagt acgcgcagct gcgacccgtg ggtcaggtgg 2220 gccggacgta ccgactacct cagccgctga agtaaaagtg acggatccag aaatcgccgc 2280 cttgttggag cgatatcagg atatctttgc ggacataact gagccacctc ctgaaagatt 2340 ggtgactcat accatcccgc tggtcgaagg tgctcagccc gttgctcggc ccctatatcg 2400 actaactcca aatgaattgg aggaagttaa acgacaagtt gaagacttgt tgcgtaaagg 2460 gatgatacgg ccaagtagtt cgccgtgggc tgcaccaatc cttttcgttg ctaaaaagga 2520 cggcacacta cgaatggttg tagactatcg tgggctaaac gctcaaacgg taaagaaccg 2580 gtatccttca ccacggatcg atgatctagt cgatagtctc ggtggtagta cagtgtactc 2640 atccatcgac cttcaacaag gatataacca aattcgtatt cgtaacgaag atgttccgca 2700 aacggcattc cggacacccc tcggtcacta tgagtatgta gtgttaccgt tcggtctgac 2760 caatgctccc gctacgtttc aaacagttat gaatcgtgtc atggaaccgt ttattggtcg 2820 ctttgtggtg gtgtacctgg atgatatctt gattcattca cgaagtcgtg aagagcattt 2880 acgacacttg gaacaggttt tcgaagtgct cagacgggaa cgtctccacg ccaaagcctc 2940 aaaatgtcac tgggcacaaa cagagttaga gtacctggga catattatca gtacgtcagg 3000 tgtacgtcct gatcccaaga aagtccgcgt tgtgcgtgac tggccgttac ctaagggtgt 3060 atttccagtg cggattaagg ccagggatta gcgttaatcc ctgcgctaat cccggcagtg 3120 gaaatcccac cgggattaag caggattagc cggggattaa gaaattcctc aggacaccgt 3180 gttctctaat cagaagatta gcgggagcta gcaagagatt aggaaagaac ataaactgaa 3240 cttgatgccc atgtatttac ctggcaacct gtgacaaaaa agttattagg gtgtatttcc 3300 agtgcggatt aaggccaggg attagcgtta atccctgcgc taatcccggc agtggaaatc 3360 ccaccgggat taagcaggat tagccgggga ttaagaaatt cctcaggaca ccgtgttctc 3420 taatcagaag attagcggga gctagcaaga gattaggaaa gaacataaac tgaacttgat 3480 gcccatgtat ttacctggca acctgtgaca aaaaagttat tacctggctc gagccaggta 3540 gtaactttcc gtatctggat tagcattcac ggcgccatgt ctgacgttaa tttctaggta 3600 gttccatata tatgatctca aataagcaat tcctgttttg ggttgctcaa aaggtgatga 3660 agagatgaac ggcgagaaga gtgcgcttcc tgttcatatc taatactgat tcaattccta 3720 atgcccaaac tagttcagaa cttaacaatt ttagcttcag aatcacatag gaagtatgca 3780 tcgccctttg tacggcctta atcccagcgc taatcccagg ccttaagaat tgccagggat 3840 tagccgggga ttagccggga atagcgggac cttaatccct ggccttaatc cgcactggaa 3900 atacaccctt acctggctcg agccaggtag tatctttccg tatctggatt agcattcacg 3960 gcgccatgtc tgacgttaat ttctaggtag ttccatatat atgatctcaa ataagcaatt 4020 cctgttttgg gttgctcaaa aggtgatgaa gagatgaacg gcgagaagag tgcgcttcct 4080 gttcatatct aatactgatt caattcctaa tgcccaaact agttcagaac ttaacaattt 4140 tagcttcaga atcacataga aagtatacat cgccctttgt acggccttaa tcccagcgct 4200 aatcccaggc cttaagaatt gccagggatc agccggggat tagccgggaa tagcgggacc 4260 ttaatccctg gccttaatcc gcactggaaa tacaccctaa ctcgattaca gagctgcgtc 4320 agttcttggg gttgaccaat tattttcgta aatatattcg gtcatatgct gcgttgtcgg 4380 cacccctaac cgatatgctt tgtggtaaag caaacatatt gcccgagtgg actccctcgg 4440 cacgtgaagc ctttgaggta gtaaagaaag ccttggcaga cgatgtcttg cttcggtacc 4500 ctgatttgac caaaccgttc tcttttgagg tgatttcgga cgcatcgtta aggggaacag 4560 gtgctgtact tctccaagat ggagccccta ttgcgttcac cagtaaaacg ttcacgccag 4620 ccgagcggaa ctatacaacg ggagagcagg aattgcttgg tgtaatccat gccctaaaag 4680 agtggcgatg ctacctcgaa ggaccacatg acgtacgcgt ggcaacggat catcacccgt 4740 tattttacct caaaacgcaa cccacgttaa atcgaaggca agcacgttgg cttgagttcc 4800 ttagtcgatt tcatttattg tgggaacatc gtgctgggaa actgaatgta gctgatgctc 4860 tcagtcgaca tccctcactg aatgcgataa cccgaaggac gaaagcatgt acgcttcgag 4920 aacgtatcct ggctgggtat gctaaggatc cttggttcgg tcaatcacta aacgtagcta 4980 cgtaatgaac aaggctactg gctcaaggcg atgcctacgg gacgtcgaag tattgtcgtt 5040 ccatgtgagc cccaactacg acaagaactg atagatcgct gtcatggagg acccatgggt 5100 ggacacccag gagtcgctcg cacccttgag ttagtacaac gacaccattg gtggcctggg 5160 ataacagcag atatcgagtc tttcgtacgt tgttgtgata aatgtcaacg taacaaaacc 5220 ttgtcagggc gacaacatgg tttgttgcaa ccgttgccaa taccagacat gccgtgggac 5280 agtgtctcaa tggattttgt ggttggtttg ccgcgtacgc aacgacaaca cgacgccatt 5340 tttgttgtgg tggatcgtct caccaagatg gctcattttg taccaaccaa tacgcatgtc 5400 acagccgaga aaactgcgga gttgttcctt gcaaacgttg ttcgattgca tggattgccc 5460 aaaacaacag tctctgatag aggaccgcag tttgctggaa tgttctggca acatatggct 5520 cgtatgatcg atcttcgttc agatctgtct acagcattcc atccacagac cgatggtcaa 5580 acagagcgca tgaaccgtgt gctggccgac atgttacgaa attactgtga tggatctcca 5640 tccacgtggg ataaagtttt atccttggcg gaatttgctg ttaacaattc ggtaaaccgg 5700 tctactggtc aaacaccctt ctttctaaat tacggttatc atcctgcaac acctactgta 5760 cgagagttag atgttactgt accaacagct aaggcatttg tgcaaacaat ggatcaacgc 5820 ctagctgatg ctaaacgatg tttattggcg gctcaaagtc gtactgagca acactacaac 5880 gccaagaaaa gggatgtttt gtttgagcca agacaacttg ttttattaag tactaaaaac 5940 ttgcgtttgc gaggtaaggg cattcgtaaa ctcacgcctc gttggtgtgg cccgttcgag 6000 gtcgaacaaa tggtaggaaa tgtcgctgtg aagctgaagc ttccaagcaa cttgaagata 6060 cataatgtat ttcatgtatc gcttgttaag ccctaccgta ccgatggtac ttttcaaccg 6120 ttgcctgttg agcaattacc ggaggagttc tctgaggata ctacttatcc gatagaccga 6180 gtattggact atcgccgccg gaaggtggga cgtaagtacg tcgatgaata tctggttaag 6240 tggaaaggtt tcgagtcgga acataacagt tgggaaccag ctgaccactt tacaccggat 6300 atggctgctg agttgcagtt cattaagtcc cgtagtcgtg aggacacgac tcctaaaagg 6360 aggggataaa tgt 6373 // ID Gypsy-20_PSo-LTR repbase; DNA; PLN; 456 BP. XX AC AAQY01000794; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PSo_; KW Gypsy-20_PSo-I; Gypsy-20_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-456 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000794; Positions 160603 161058. XX SQ Sequence 456 BP; 131 A; 136 C; 109 G; 80 T; 0 other; tgtcatgatg cagcatgtct gctgctggca cccacgcaag cgggtacgcc agcaacagac 60 atgctcaagg aagacgtacc tggtggctag gaaggcaggc gtcgcagcac cgcctcctcc 120 tccgccacaa gtagcttgcg cgcagcgtcg cttgaaggct ggcgccaggc ttgcgcaaga 180 ctgcctggcg cccggaatcc agaactctac ctgcacaagt atacaaacat gcatatatag 240 gattacgaaa acagaaaaca cttgcattta gtatagatta gctcagcttc tagaacgaca 300 ctaaggagaa agcaagagga agacctagag cccgtagcta gcccgaagac ttaaagccat 360 cagtctcact ttgcatttta cccaaaagca agcaagcaac cacaacaact ccacgcactt 420 tcgctacggc aggccccacc gcatcggagc ctgtca 456 // ID PYRET_I repbase; DNA; PLN; 6300 BP. XX AC AB062507; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Magnaporthe grisea Ty3/gypsy-type retrotransposon PYRET_I, DE internal region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; PYRET_I; KW Ty3/GYPSY superfamily; gag-pol pseudogene; internal region; KW internal portion. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-6300 RA Nakayashiki H., Matsuo H., Chuma I., Ikeda K., Betsuyaku S., RA Kusaba M., Tosa Y. and Mayama S.; RT "Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea RT contains an extra domain between the nucleocapsid and protease RT domains."; RL Nucleic Acids Res 29(20), 4106-4113 (2001). XX DR Genbank; AB062507; Positions 476 6775. XX SQ Sequence 6300 BP; 2386 A; 1622 C; 1101 G; 1191 T; 0 other; ttttgatcgc tcctgttcag tactttgctt taaaatatac cgagcaatat ccgacaacat 60 gtcttcccag acgtccaaaa acaacacccc caacaccccg gctacgaaca gcaaagcggc 120 ccagaaggcc cctgttcggc ccaaggatga taacgataat aaggacgagg aagaccaatt 180 ccgtaggcag gttgctcaga ccaaccagaa gctccacgaa caaacgttcc gcgcaaccca 240 actccaaaag gaattacagg ctttccgaat tagtgctaac gttacctcaa ccccttttaa 300 tgggcgcgaa aaactcaaac ttaacccccc aaccacattc gatagcacac ctggacaatt 360 taaaaggtac cttatatagg tacgcattta ccaaacattc catttggaaa ttttccgcag 420 taaaacaaaa aaggtggtac acgcggccat tttcctccga ggacgaacct tgtcttggtt 480 cgaacctctg ttacaaaaat ggcttaatat accccccgaa aaacgacgcc aaaaagtcac 540 cgacattttt tcaaccttcg cagggtataa acgcaccttc cgttccttgt tccaggaacc 600 cgataaaaaa cgacaagccg aacgaaattt ggccaaccta cgacaaacca agtcagcctc 660 cgcttataca accgaattta aaaggctagc aacaaggctg gatataactg aaaaaaccaa 720 aatcctccaa ttctaccagg gactgaaatt aagaataaaa gacgaggtat ccaagctcga 780 ccgacccgag gatttcctcg aatacgtcga acttgccatc aaacttgaca accggattta 840 cgaacgccga caggaaaaac aaggcggaca gcgaatattc gtcaccttaa ttcgacaaac 900 caatacggga cgcaagtacc aacaccccca acccacatac cacagaaaca atggtggatg 960 gcagcagccc cgtcatatgg caccccaaac ctacaataca gcttatagta cccacaatgg 1020 acccatggac ctcagtgcca cacaacacaa aaagccccgt aaagacccca aaagcggcaa 1080 gtgtttcaaa tgcggcaaaa cagggtatat cgccaaaaac tgtccgagaa accaggaaaa 1140 tgtccctaat tttaggggca agaccgaaaa accacgagga tttaatgcca ccaattacca 1200 gcaattacgg cctaaccaac acagcacgat aaactggacc acctgctaca atgacaattg 1260 tatggtacat aacagttcca aaaacgacgc aggatggtac ccacaaaagc cccgaggcat 1320 tcgaacccta acagtaaaaa accgagtacc cctagggaca ggataaccaa cgaaattata 1380 ccgacaaaag acccaattac ccgaatttac ggactcggat gcctccggaa aatcggatga 1440 ggaacctttg ggacaaaccc accatattag aacaaccaat caatccttaa tacaaaaatt 1500 aagcgaggat tccgagggaa agtccagcga ggaagagacc atgccctcga gccagtataa 1560 cgtaacaaag gaaaacaacc cctacatata cgaaaaaaag catatcgatt tataccgaga 1620 cgaccaatca gtacaatttc ccggattgcc atttcaggca caaatccgac atcctacagg 1680 accagttaat gcaatttttg gagaccaccc gaccttggac accaaacacc cttaatacgc 1740 agaaatcttt tgggcaaaat gtttccgaaa caattgtgga ctccatttaa gcaggaagat 1800 agtccacaat tttttcccac gacgacgcaa agcaacaggc atttacgaaa tatataccac 1860 aaccgaccta ccaaattggg aaattaagat aaaactcaat attgaaccag ccgcaatttt 1920 cacgcctaac gacaattatc ccatggcgtg ttgcaaccaa aaacaattcc catggtataa 1980 atgcacccga agcgtatgca aagtacatat gttagccaaa gcacaggcct ggcacgaaca 2040 gaaatcacgg caaccaggac ctgcaccaat gaccagaatt atgtggaacc ccaacgtacg 2100 agataacgag ataaccacga acgcacgcaa gacacccgtg ccagcgaagc acccacttga 2160 cctagtcgaa acaagaaacg gcacagggca ccgaacggcg acaacaggaa cgaaacaaag 2220 aaccctgaac gctacacaaa acaccatagc agcatatgaa cacatatttc tcgacatacg 2280 actcgatggc aaacccatac gagcactcct cgacaatgga gcacaaggca actatatctc 2340 accaagggtc gtagcgaaac gacggatacc ttggcagcaa aagaaggaac cataccagtt 2400 gcaaaccgtg gaaaaaaagg cagttttata cgggaacggc accatcaaaa tagagaccgt 2460 acacctttgg atggaaagct atggacgaaa ggaacaaatc accttaaaca ttacggaaat 2520 aggggacaaa aacgtgatat taggaatccc ctggcttaaa aagagtaacc cccggataga 2580 ttggacaacc ggccaaatcc aatgggaaga accgttagcc tttaaaggaa aatccgagaa 2640 acggacttca cgcaacgaac gtagggcata ggaacgaaat caacaaaaaa ttatggcgct 2700 attgaggaaa agcgagccac gcctggaacc aatatcggaa gaatcgcgac tatccatgag 2760 cgaaaaacga tcgaacttta ctacattgat cgacaatatc ccggccgaat accggatata 2820 taaacgatta ttcagccccg aattcgaaac aggattaccc gagcatagtc cgttcgacca 2880 cgaaatacca ttgaaaaaag gaacacagcc caaattccac aaaatatacg gcttaaaccc 2940 gacacaaatg gaggcactaa acgaatacct cgcaaaaaac ttcaaaaaag attatatcag 3000 accatcgata tcaccagcag gatacccaat cctcttcgta ccaaaaaaga acggaaaatt 3060 acgactatgc gtggattaca gacaattaaa cgacattacc ataaaaaatt gctacccact 3120 cccactaata agagaattcc gaaacatgct ttaccaaaca caatggttta cgacattaaa 3180 cctcaaagga gcatacaatt tgatccgcat aaaggaaggc gaaaaatgga aaaccgcgtt 3240 tcgcaccaaa cgaggatatt atgagtacct aataatgccc ttcggtctta ccaacgcccc 3300 agcaaccttc caaaccataa tcaaccacgt tctcagggaa tgcctaaaca ttttcgtcgt 3360 tatttacctg gacgacatcc ttgtcttttc caagacgttg gaaaaacata agcaacacgt 3420 tcacacaatc ttacaaaagc tgcaaaacgc taaactctta gttgagcccg aaaaatatct 3480 ctttcacagc aaacaaatca atttcctagg atacattatc gctcctggag aaattaggat 3540 ggagaaatcg aaaatccaag cggtaaagga atggcctcaa ccacaaaact ggacggaaca 3600 gacacaacag gcctttgaac agctacgaga cgcaataacc agagaaccaa tcctcaaaat 3660 accagaccca acgaaacctt tcgaagtcga aaccgacgca tcggattata cgatcggagg 3720 acaacttaat cagcgagacg aaaaaggacg gttgcatcct tgcgccttct tttcacaaaa 3780 attacatgga ccagaattca attaccaaat ttacgacaaa aaatttatag ccatcattcg 3840 aacatttgaa aaatggaaac cacaattatc cggaactaaa cacgaaatgt taatttacac 3900 ggaccacaaa aacctgaccc atttcaccat tagcaaaata ttgaacaaac gacaaattaa 3960 atggtcagaa ttcctgtcaa aattccattt taggattatc taccgaaaaa gaacagaaaa 4020 cggcagggcc gacgccctta accgaagacc agatcacgaa aacatagtgc caaaagaaat 4080 acgggttatc ctcaccacag acggaaacgg aaacctttta ccaacatacc ggagccttat 4140 aacaacaaat acggtaacca caccaaaaaa gatacggaag atccacggaa ataaagccca 4200 cggacaccaa ggaatttcca aaacatggaa acggctaaaa cagcattaca attttaaaag 4260 aacacgacaa aaaatacgaa aaaccatcaa agattgcgaa ctttgtacca aaagcaagtc 4320 cgcaaaacac aaattttacg gactcttaca acccttacca gcccccagca aagtatggca 4380 gaccatcaca atggacttta tcgtcaaatt acctctttcg gaaaaaccat tcactaaaac 4440 caaatacgac agcatattgg ttataatgga caaattcacc aaatacgcct actttctacc 4500 atacaaaaaa agcagcaacg ccgaagaaat cgcttattat acattcctac aaataattgt 4560 cagcaattac ggacttccaa aaaacatcat cacaaataga gacaaacttt tcatatcaag 4620 attttggaaa tccctgatgg aacaattagg aacaaaccac aaattatcca cagcattcca 4680 cccccagaca gacggataaa caaagcgaac caaccaaaca ctggaacaat acctaaaata 4740 ttatgtgaac cacaagtaag acaattgggt acggttatta cccacagcac aattcgttta 4800 caacagttta aaaaacgaaa ataccaagac aaccccgttt tacgccaatt atggatttaa 4860 ccctacagcg tacggagaac caagaaccac gattacggca ccgcgagccg ataaacaagc 4920 gagcgaatta cggcaattat acaaaaaact ccagcaggaa ttaaagttcg tacgaaaaag 4980 aataatgaaa tacgccaatt agcatcgaat aaagggacca tccttcaaaa agggaaatag 5040 cgtctacctt attcgacgca atatcaaaac acaacgacct aataacaaat tcgattttaa 5100 aaagcttgga ccttttaaaa ttagcaaaaa aatcagcgat accaactaca gactgtcatt 5160 accagacacc atgaaaattc accccacatt tcacgtatta ttactggaac cagcaccata 5220 cggcactagc atacaaaaaa cgatcgagat cgacgcagaa cagacctata acgttaaaca 5280 aatattcgac catagacgaa accacggcaa aataaagtac tttattaaat gggaaaacta 5340 tgggcatgaa aaaaacattt gggaacccct taaccacctc caggattgcc aggaaccgct 5400 ccgccaatac tatcaggagt tggatctgcg agcaaatcaa ccaaaaaaaa gaggacgacc 5460 taaaaaaaca ccacctacca ttcccaaaaa ttaaaggccg accaggattc gaaaccatac 5520 caccagacga acttacaaaa gaacgatcaa tatgcaatat aaaataaaaa caccagaaaa 5580 acgacgtacc aacggaatgt tgcgcaaaaa cattcatctc atccaacaac gaaggattca 5640 gaggatccat cgggaaaatc gaatcccaga caaaattgga atccggaaaa agcgactcca 5700 aggacatttc aggcaggacc tcggctgatc gtcgacgttc ctcctgttcc gcctcctcac 5760 gttccacccg atccaattcc tccaaattat caattccgcg agacacagct cgcattattt 5820 tttcaaacca catcttcttt tatttgcgaa aacgctcgac cttcgcatcg gccaaacgaa 5880 ttttttcgtc gcgcccggcg acgagcctcc tccgcagcct ttaattcctc ctccaatttg 5940 gtatactgtt ggccaatcgt gcgaaactga acaggcgaaa ttccaaggac atcgcacccc 6000 gaacggttcg accgcaaaca ctcgacatac cgagaggaat tttgaggaga aaccgcacat 6060 ttgggtattc ccctcgattt acaagcaaaa caaacaacca tctccaaccg tcgacaaaaa 6120 caaaaaaaaa agaagggcaa aacgacgctc tgtcgacgag cgaccaaatt tcggtttggc 6180 tacacgatta aatatggcgc aaaaaagtta gccaaaaagg aaggaaaccc aaaacaggga 6240 tcaagggaat acggactatt taaaggccaa aagaatttgg ccaaaggaaa ggaaacctga 6300 // ID L1-1A_VC repbase; DNA; PLN; 8580 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-1A_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-8580 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 479-479 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 2% divergent from copies of CC L1A-1_VC. Its 2770-bp 5' terminal portion is less than 70% CC identical to that in L1-1_VC. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 130..2757 FT /product="L1-1A_VC_1p" FT /note="ORF1." FT /translation="MLQTRAAKTADRPKIQTGRKTATATRPQTTQRKVKRE FT EFTPLELNILASPTERLFVLCPETWELVAHWPPGSDISDVYAQSYGRLVEH FT IISKLKLWAKSADLEALEGPAVTKRRIFPMKDKRVAMEISVLMPPGSLARL FT TNSELLREGRLQLGGVEFYPGQEPVNVELTVKGLDKIVPRRWEVSGLPLGI FT TRQGVTAFLAMAYSRVSGRQWKREEFGFPCKCPFQADKWAVKLPAGNFNLP FT AELPYTYGTPGDSTHCTGTLVATKVPLALEAAPAIIGCLPPARKGAQPKMT FT QIPESGPSRSNAGTVVNGTWAAIARTQRGTTATAATGRTNAPEMARHNIIG FT PSPMPPLPAFSGPIHTVTHLGSREPVMELQVSGIQAAVAAQIPTPAAVEIG FT STSAPRPPPPPQSKGGPDLQPGPSSSRALPPQPNGSGGSGSKPATQPRGNN FT TEGSPGDAGWMRQEKRGKKTPIPDPQEARQETVVAAPHQAADPTPGATIAA FT DAPPPTPPTAPTHSALGLETTHMEMEAEQTQAESDLADEGNPYSVLAELRD FT EEENPPGQTKAPGAAATTPHPEQNTAPGAAATNPPLEQNTAPDAAATKPPL FT RRTTAPDAMSLRIEERAQEAANPPPGQPKQPQVAIVFGTPHKAAAIQLTPI FT REQPWKPVAEQAGPANNAQTNREWPSPPPTQAAGKNTTMGSPKTQAAALFA FT QVEPIQLQMTRPMTRSTATAAKAQLTHMAIVKKQRRPDLRDQARKDHFKKL FT TEPARTARRQSAELARQAKEAREARHREAGKQKRGDIWQANRKNRMAKTGG FT ATTGKTVEDIAMEEEAGARQGPEATEKEASDPGSPQAGSQISSLILQVPTV FT TQPDVETESPPGEGSSVSHTQQT" FT CDS 2762..7423 FT /product="L1-1A_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MPPATNGNRQRGATRGHPLRIATHNVQGMTAKHTAKI FT HAAAKLWTEMGLDVVCLQETHHTNAHDQSRLEKELNMASQAMHTRGWKVAA FT HSWSNSSHTAGVLILVRRDLTAIVENPPPIPVVRGRFASCILRWGGHRIHI FT CNIYGPTGTSAHVNPLRQQLFTTTLPATTKHAAENSDTMLVWAGDFNFVED FT PGLDSTAGPGGRRGDGPTVDLLRAAGPTMVDSHRQLHPHSCDYTHFYRAPC FT VGASRLDRIYVDHGTMPYIAKTEIAVQTPSDHKPMVMHLLPCRPESKGPGN FT RRVRLAFTSHQDLAASMEAWITSQCATAPSAEDNPLGLIAWWPVFKRRLST FT LALQLNKAAQHRKLRPGARAREVLPQVQLARQAVDAAPTAQQPLQQLVEAQ FT AMLARAHREDCRKDAMEARTHWLRAGERPSPSLTAFLQAQAIDQQPAPVAL FT QALSGRLVTNPAQLPQVVADFWKDVSKAPDFICPQARQAVLNSLTAANIKF FT PAEADEQLGAKKITATELRKALKKSAPGKAPGWDGIPADIYRKFWSAIGNT FT MAGLFTAIGTTGQVPAGFLEGIITVLYKKGDPKLPGNYRPITLLCSDYRLL FT AKVLANRLGPALGRVITPEQSAFLPKRLIGASVLFLRHLSHLLRKQNRQGL FT LAFLDFAKAYDTVDRGFLLAAMEAMGAGPQLCAWVRLLLSETRARAMVNGY FT KSRLVDMEAGVRQGCPLAPLLYLFVAQALQCWLRSQEVGIKLQPSDPNPVT FT ACQYADDTEVALDGAESVPSFLQAMETFARASGQRLNLEKVELLWIGQQRQ FT QQQQPAPAAGPQLTAPQQETIGGLKVVTTATALNLPIDNQVTPPQPDWTKR FT MGEAKRRMQRLSRFPLSAFGRATAASAYGLQTVTWHMEHGGLAPDRVLDEI FT ERLTARLVDRQQGPDDPGRRLTGVPKELLIGHPSTGGFGLLPLRQHIQARH FT AVWAARFVIATLGLRTGNTRSDTGATDTDMQVGGGIHPWVRTLSAYLLLTN FT PAFQPWALTTASPTGPWLGTRDLPKDISRIVGALGHLPPPEDIGTNPLTPG FT DWCWATALWGNPLFPNAGGTDPTDRGRRPGLEYQYPGLATCRKLQTVGDLV FT RVWTLAESSDLATLPRTVWLEWARTHLDPLTPISTRDKPVTRAALAALHSS FT INPAWLEAARTVETRRQQQQQQQQRGLTEPMAAATEGEEAVIPSPAPLLTS FT MQAMGMIAGRIGWRIPGMAEATPLARLTVRLATQLQCGPMEERRRRLVAEF FT VREATDPQGPSPPPPSEISLFRATQARVWSGVRWENENKETLWRLAVDGVA FT LPGNTHLARMTPERCGCGGFGGAAGQPCSPRMHHFWECPVAQAVRAQIDRH FT LQSSQEAAVGGVTRKQLWLLLAPTGCEQAVWDIIALSALSAMEVGRCCLRA FT AGRRQERAGSQGPQNREHAQQVQVPGPRQRRITDFFIQADGAGPQTGPALN FT APGDEDETQERNTATGAVAATAGAAAAAPAATPLERACARAVVDFWARLRS FT FTALGTPRRGWDRVGPDHPILSVSEGALRCAEAVEIIA" XX SQ Sequence 8580 BP; 1950 A; 2584 C; 2660 G; 1386 T; 0 other; aaaaatgggc ataacttagc cgcaccatac tgcgactaga gccctgacca ataccgctac 60 cacggtccgc aatctttatg gctattttga ttacaacatc taaatgccat attaaattcg 120 acgcaacaaa tgttgcaaac tagagcggcg aagaccgctg accggccgaa aattcaaact 180 ggtcggaaga cagcaacggc cacaaggccg caaacgaccc agaggaaagt aaaacgagag 240 gaatttactc ctctcgaact taacattctc gcgtcaccga cggagcggct cttcgtgctc 300 tgtccggaga catgggaatt ggtcgcgcat tggccaccgg gctccgacat ttcagatgtc 360 tacgctcaga gctatgggcg acttgtagag cacataattt ctaagttgaa attatgggca 420 aaatcagcgg acttggaggc attggaaggg cccgcagtga cgaagcggcg catctttcca 480 atgaaggata agcgcgttgc gatggagatc tcagtcctga tgccaccggg cagcttggca 540 aggctcacca acagcgagct tctcagggag gggcgcctac agctaggcgg agtggagttc 600 taccccggcc aggagccggt aaacgtggaa ctaacggtta aaggcttgga taagatagtg 660 ccgcgtcggt gggaagtgtc gggacttccg ctgggcataa cgcgccaggg agttacggcc 720 ttcctcgcga tggcgtacag cagggtcagc gggaggcaat ggaagaggga ggaattcggc 780 tttccctgca aatgcccctt ccaggctgac aaatgggcag tgaagctacc ggcgggaaac 840 ttcaatctcc cggcggagct cccctatacg tatggcacgc caggggacag tacccactgc 900 actgggaccc tggtcgcgac caaggtgccc ttggcgctgg aggcagcccc cgctataatt 960 ggctgtttac cgccagcacg caagggagct cagccaaaaa tgacgcagat tccggagtca 1020 ggccccagcc gaagcaatgc tggcacggta gtaaatggca catgggctgc catcgcgaga 1080 acccagcggg ggaccaccgc cacagcagcc acggggagaa ctaacgcccc cgagatggca 1140 aggcacaaca tcatagggcc atcgccaatg ccgcccctgc cagcattcag cggcccgata 1200 cacaccgtta cccacctggg atcccgggaa ccagtgatgg agctgcaggt gtcagggata 1260 caggctgcgg tagcagccca aatccctaca ccagctgcag tggagatagg ttccacctcc 1320 gcaccacggc caccaccgcc cccacagagc aaaggtggcc cagacttgca gccagggccc 1380 agcagcagca gagcccttcc tccccagccc aacggcagtg gcggcagcgg cagcaaacct 1440 gccacccaac cccgtgggaa caacacagag ggttcccccg gggacgcagg gtggatgcgg 1500 caggagaaga ggggtaagaa gacccccatt cccgaccctc aggaggccag gcaggagaca 1560 gtggttgcag caccacacca ggcagccgac ccaacacctg gagccaccat agctgccgac 1620 gccccacccc caacaccacc aactgcaccc acacactccg ccctgggatt ggagacaacg 1680 cacatggaaa tggaggcgga gcagacccag gcggaatcgg acctagcaga cgaggggaac 1740 ccgtactcag tgctggcgga gttgagggat gaggaggaga accccccagg gcaaaccaag 1800 gcacctggcg cagcggccac gaccccccac ccggagcaaa acacggcacc tggcgcagcg 1860 gccacgaacc cccccctgga gcaaaatacg gcacctgacg cagcggccac taaacccccc 1920 ctgaggcgga ccacggcacc tgatgcaatg agcctcagga tagaggagag ggctcaggag 1980 gcggccaacc caccaccagg acagcccaag cagccccagg tggccattgt cttcgggaca 2040 ccccacaagg cagctgccat ccaactcacg cctatccggg aacagccttg gaaaccggta 2100 gcggaacaag ccggccctgc caacaatgca cagacaaaca gggaatggcc atctcccccg 2160 ccaactcagg cagccgggaa gaacaccaca atgggctccc cgaaaacaca ggcggctgcc 2220 ctctttgccc aggtggagcc gatccagctg caaatgacac ggcccatgac ccggagtaca 2280 gcgacggcag ccaaagcgca actaacccac atggcaatag tgaagaaaca gcgcaggcca 2340 gacctacgcg accaagcgcg gaaggatcac ttcaaaaagc tgaccgagcc ggcaaggaca 2400 gcccgcagac agagcgcaga gctagcccgg caggccaaag aggcccggga agccagacac 2460 cgagaggccg gaaagcagaa acgcggagac atatggcagg ccaatcggaa aaatcgaatg 2520 gcaaagaccg ggggcgctac aacaggaaaa acggtagagg acatcgctat ggaggaggag 2580 gcaggtgcaa ggcagggacc ggaggcaaca gagaaggaag ccagcgaccc aggttcgccc 2640 caggcaggct cccaaatttc cagcctgatt ctccaagtcc ccacggtgac tcagcccgac 2700 gttgagacag aatccccacc cggagagggt tcttcggtca gccataccca acaaacctaa 2760 catgccgcca gcaaccaatg gaaaccgcca gcggggcgcc actaggggcc acccccttcg 2820 gattgctacg cacaacgtgc aaggcatgac ggcaaaacat accgcaaaaa tacatgcggc 2880 ggccaagctg tggacagaga tgggacttga tgtggtgtgc cttcaggaga cccaccatac 2940 taatgcccat gaccagagtc gactggagaa agagctaaac atggcatcac aggcgatgca 3000 caccagggga tggaaagtgg ctgcacactc gtggtccaac tcttcccaca cagcaggagt 3060 tctcatccta gtccgtcggg atctgactgc tatcgtggaa aacccgccgc ccatccccgt 3120 ggtccgaggg agatttgcca gctgtatact acgctgggga ggacaccgca tccacatctg 3180 caacatttat ggccccacgg gtacctcagc acacgtgaac cccctccgac aacagctgtt 3240 cacaaccacg ctgccagcca caaccaagca tgcagccgag aacagtgaca ccatgctggt 3300 ctgggcaggt gacttcaact ttgtggaaga cccagggctg gactccacag cgggtccagg 3360 agggcgacgg ggagacggcc caacagtgga ccttcttcgg gcagcaggcc ccaccatggt 3420 ggacagccac cgccagctgc acccccacag ttgcgactac acccacttct acagagctcc 3480 ctgcgtcggg gcctcccgcc tagaccgcat ctatgtagac catggcacca tgccgtacat 3540 tgctaagacg gagattgccg tgcaaacacc gtcggatcac aagccaatgg tcatgcacct 3600 gctgccgtgc cgaccagaga gcaagggccc agggaaccga cgagtgcggc tggccttcac 3660 atcacaccag gacttagccg caagcatgga ggcatggatc accagccagt gtgccacagc 3720 accatctgcg gaggacaacc ctttgggcct gattgcgtgg tggccagttt ttaaacgccg 3780 gctgagcacc ctggcccttc agctcaacaa ggcggcacaa caccgcaagc tcagaccagg 3840 ggcccgggct cgggaagtgt taccgcaggt ccagttggca aggcaagcgg tggatgcagc 3900 ccccacagca caacagccac tccaacaact ggtcgaagcc caggcaatgc tcgcacgagc 3960 acatcgggaa gactgccgga aggatgccat ggaggcccgc acccactggc tgcgggcagg 4020 ggagaggccg agcccatccc ttacagcctt cctccaggcc caggctatag accaacaacc 4080 agcccctgtc gccctgcaag ccttgtccgg ccgacttgtt accaaccccg ctcagctgcc 4140 ccaggtggta gccgacttct ggaaggatgt gagcaaggcc ccggacttca tctgccccca 4200 ggcccgccaa gccgttctga actccctcac cgcagccaac attaagttcc cagcagaggc 4260 agatgaacag cttggagcca aaaagatcac agccaccgaa ctgcggaagg cactcaagaa 4320 gagcgcacct ggcaaggccc cagggtggga tgggattcca gccgacatct acaggaaatt 4380 ctggtcagcc ataggtaata ccatggcagg cctgttcact gccattggca cgaccgggca 4440 ggtgcccgca ggcttccttg aagggatcat cacagtgctc tataaaaaag gcgaccccaa 4500 gctccccggc aactaccgcc ccatcacgtt gttatgctcg gactaccggc tccttgctaa 4560 ggtactggcg aaccgcctgg gccccgccct gggacgggtc atcacccccg agcaatccgc 4620 cttcctcccc aagcgcctga ttggggccag cgtactcttc ctgcgccacc tgtcacacct 4680 cctccgcaag cagaaccgcc aagggctttt ggcattcctg gactttgcca aagcatacga 4740 tacagtggat cgcggctttc tcctagcggc catggaggcg atgggggcag ggccacagct 4800 gtgtgcgtgg gtacgtctgc tactgagcga aacccgagcc cgggcgatgg tcaacgggta 4860 caagtccagg ctggtagaca tggaggctgg tgtccgacag ggctgccccc tggcgcctct 4920 gctgtacctc tttgtcgccc aagctctcca atgctggctc cggagccagg aggtgggaat 4980 taagctgcaa ccgtccgacc caaatcccgt caccgcctgc caatatgcag atgacacgga 5040 agtggcgttg gatggcgcgg aatcagtccc ctccttccta caggccatgg aaacatttgc 5100 ccgggcatct ggccagcgac tcaatctgga gaaagtggaa ctgctatgga ttggccagca 5160 gcgacagcaa caacagcagc cggcgccagc agcaggaccc cagctaacag ccccccagca 5220 ggagacaatc ggaggactta aggtggtaac cactgctact gccctgaacc tgccgataga 5280 caaccaggtg accccaccac agccggactg gacgaagagg atgggagagg ccaaacggcg 5340 gatgcagcgt ctgtcccgct tcccgctgtc agcatttgga agggcaacgg cggcgtcggc 5400 atatggcttg cagacggtca cctggcacat ggagcatggc ggactggccc cagaccgcgt 5460 gctggacgag atagagcgac tcacggctcg cctggtcgac cgccaacaag gcccggatga 5520 tcctggccga cgcttgactg gcgtgcccaa ggaactcctg atcggtcacc catcgacagg 5580 aggctttggt ctgctgcccc tccggcaaca catccaagcc cggcatgcgg tgtgggcagc 5640 tcgttttgtc atcgcaaccc tagggctgcg aacaggcaac acgagatcag atacaggcgc 5700 aacagacaca gatatgcagg tgggcggagg tatccacccc tgggtccgca cgctttcagc 5760 ctaccttctg ctcacgaacc ccgctttcca gccgtgggcc ctgacaaccg cgagcccaac 5820 tgggccctgg cttgggactc gtgacctgcc gaaggatatc agccggattg tgggagccct 5880 ggggcacttg ccgccaccag aggacatcgg gaccaacccg ctgacacccg gtgactggtg 5940 ctgggcgact gcattatggg gaaatccgct attccccaat gctggaggga ccgacccgac 6000 ggaccggggc cgccgccccg gcctggagta ccaataccct gggcttgcca cctgcaggaa 6060 actacagacg gtaggggacc tggtgcgggt ttggaccctg gcagagagca gcgatctggc 6120 aaccctgcct aggacggtat ggctggagtg ggcccggact cacctcgacc cgcttacccc 6180 gatctccacg cgggataaac ctgtgacccg ggcagccctc gcggcgctgc atagcagcat 6240 aaacccggcc tggctcgaag ctgctagaac ggttgagacc cggcgacagc agcagcagca 6300 gcagcagcag cgggggctaa cggaaccgat ggcagcggca acggaagggg aggaggctgt 6360 cataccgtca ccagcaccac tgctgaccag catgcaagcg atgggtatga ttgctgggcg 6420 aattgggtgg cgtatacctg ggatggcgga agccaccccg ctggcacgcc ttacggttcg 6480 cctggcgaca cagctgcaat gtgggcctat ggaggagagg agaagacgcc tggtagctga 6540 atttgtgcgg gaggcgacgg atcctcaggg cccgtcgccg ccgcccccct cggaaatcag 6600 cctattcagg gcgacgcagg cccgcgtttg gtccggggta cgatgggaga atgagaataa 6660 ggagacgtta tggcggcttg cagtggatgg cgtcgcccta ccgggcaaca cgcacctagc 6720 ccgcatgact ccagaacgct gtggatgtgg cggattcggt ggagcagctg gtcagccatg 6780 ctcgccacgc atgcatcact tttgggaatg cccggtggcg caggcggtgc gggcacagat 6840 cgaccggcat ctacagtctt ctcaggaagc ggcggtaggt ggagtcaccc gaaagcaact 6900 ctggctatta ctggccccaa ccggatgcga acaggccgta tgggatataa tcgccctgtc 6960 ggccctgtct gccatggagg ttggcagatg ctgcctgagg gcagcaggca ggaggcagga 7020 acgagctggg agccaaggac cacagaaccg ggagcacgcg cagcaggtgc aggtacccgg 7080 ccccagacag aggcggataa cggacttttt catccaggcc gacggggcgg gaccgcagac 7140 ggggcctgca ctgaatgcgc cgggggatga ggacgaaacg caggagcgga acacggcgac 7200 aggggcggta gcagcaacgg caggcgcggc ggcagcagca cccgcagcaa cccccttgga 7260 gcgggcctgc gcccgggcag tggtggactt ctgggcgcgt ctgcgctcct tcacggcgct 7320 gggcaccccg cggagaggct gggacagggt gggacccgac cacccgatcc tgtcggtttc 7380 agaaggcgca ctgcggtgcg ccgaagcggt ggaaattatt gcctaagagc gctttgagct 7440 tagtttgtag ggcagggctc ggggggctat aggagttcga gggggatggg ggttggagga 7500 caagggaata ggtgagaggg aaccccgaga cgggagaggg agaggagaag gacggggaat 7560 ggaggcggtc acgtcgtgca gggaagaacc ctttttcttc cctagtgcca ctccgaggtt 7620 gtagggtgct ggagagccgg ggggaggtgg ggtcgctcgg acaggggagg ggggagatgg 7680 cggtgagagc gccaaaagga cgtaggtttt ctggtgtttg ggaggttgag gtctggtggt 7740 ggtagcgggg ctcggatgag ggggagatgt ggcccgagga gggccattct atttagacac 7800 gtcttctctg tgggactggg ttgcttggtg agggacgagg gtgagagcgg tgcagtacga 7860 gacagggtga ataggtttct ggaggaccaa ccgttcaggt tagtggcggt aagggggagg 7920 cgccgcgcgg gctacaatcc tccccctgcg gttttctgga gggtctagga gctgtgtgtc 7980 gtggcaacgc taacgctttt gtggtttcgc cggactatcc cgggcccctg cagtggtgat 8040 caggcttgtg cgggatccct tttctttata aggctacttc tcccctggac cagcccagga 8100 agggacaggt ggtggaggtc agttgtttta aggtggttgc aagacgtctt gtggtgtcga 8160 gctctcttag cctttctctc ttggaggttt tttttgttgg cctgttaggt atatcaggag 8220 ccctcccctg ccgggactgc cctaaccgaa tttttgtttg tttgtttgtt ttcccttcga 8280 atcccgtttt cgttggtggt gttttggggg gttgtttcag agagcctttg actttgccct 8340 agctgagact tgtggactcg ctctagcggg acctgagagc ccttcgtggt gtattcaatg 8400 cagcgccatc cccggatgga ggggctgcgg agtggctgcg tagagtgttg gcagtctgag 8460 tcggggtcgg gagcacacaa gactaaccga cttgtgctgt gtgctcccga cccttgcgct 8520 gtgtttcggc ttcggccccc ggctctcgcg gcccacagtg taatctaagt catacataca 8580 // ID RTETP-1_PT repbase; DNA; PLN; 2789 BP. XX AC chr_7; XX DT 31-JUL-2009 (Rel. 14.07, Created) DT 31-JUL-2009 (Rel. 14.07, Last updated, Version 1) XX DE RTETP non-LTR retrotransposon - a fossilized copy. XX KW RTETP; Non-LTR Retrotransposon; Transposable Element; RTETP-1_PT. XX OS Phaeodactylum tricornutum OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum. XX RN [1] RP 1-2789 RA Kapitonov V.V. and Jurka J.; RT "RTETP-1_TP non-LTR retrotransposon from the diatom genome."; RL Direct Submission to Repbase Update (31-JUL-2009). XX DR JGI_Phatr2; chr_7; Positions 930871 933659. XX CC There is not enough sequence data to reconstruct a full-lenght CC element. This sequence codes for the protein that contains the CC APE and RT domains (corrupted by mutations) that is 36% identical CC to the protein encoded by the RTE-1_TP non-LTR retrotransposon CC from the Thalassiosira pseudonana diatom genome. Both elements CC belong to the RTETP clade. XX SQ Sequence 2789 BP; 711 A; 652 C; 826 G; 600 T; 0 other; gcactacaaa cagcagagaa ggacatggag attttgctct tgggcaatat taacgtggat 60 atctcattgc cgggggggat ggtttgagac atcaagatta caacggtgct cagcagcttt 120 gggctgcagg acttgactcg gcatttttgg cagcgaaacc actaccgtca ccgctggacg 180 tggagagcaa agcggaatgg ccggatggta cactctcgaa atgacgtggt aatggggacg 240 gatcgccggt tcatccgtgc ggtcaagatc ctggaccccc cttgttttga gagtgatcac 300 tacgctatcg tggtcacgat gcagacgggc ttgctagctg agcaaaagca ttacctggag 360 ggcaggaggc gaatgccaaa gacggcagag cgcggcagcg gggagacaaa actgccagca 420 gacgttgctt tcgagcagcg gctcaagtgc aaggtacagg tggagccgaa gaaacagtct 480 gtacatccag actggctctc ggcaatgaca catgcactcc tggacaagcg ggtcaatctc 540 ctgaaacacg gagcttcgca caggcggcgt aaacaagtgg ggcgtcacat acggaagagt 600 atgtgacggg attggaggag tcgggcagaa gaagcaggac gacaaatcga gcagctacta 660 gaggccaagg atgtctctgg agcttttgat gtggcgaaac ggtggtacag gaagtctaca 720 ggtcgacctc ctccaccgtg ccgcgaaaac atggaggcaa cagcaagccg atacaaagac 780 ttgtatcagg cggaaccagc tcccggggca ccaatcccca cctcaaccag ccgccagtgg 840 caagtgcttg acaatgcgcc agaagctgac aagattgctt ggcatgtgcg aaagctcaag 900 accaagaagg ctccaggcac atcaggcatt cgcccagagg atatgcggca ctggttaaac 960 ttgttcgagg tggaacagag ggatcagcaa ccgttccggc tcttgacgga gattgtccag 1020 agcgcattcc tgacgggtca gttacctcag gcactcagtg tggcaatact ggtgctgctc 1080 ctgaagccgg gcagtactga aattcgcggc atcgggttgt tggaatctgt gtggaaactc 1140 attttgtcca tcatagatgc aagaatgaag gacgttgtgg agtttgacaa tgcaatacat 1200 ggattccgtc aagagagagg caccgggaca gcggtcttac acaacaagct gggcatgcag 1260 cttgcggtcg cgcgtaagga tacggtagtg caactatacc ttgatttgac caaggcatac 1320 gatatcctgg acaggggatg tgcacttgcg attttacgcg gttataacgt tggcaagaac 1380 attattcgga ttttggagac tttctggtcg tggcacaagg cggtgccacg ggccagtggc 1440 tactatgggc gagtgattgg ggctacacgc ggtgttacgc agggagacat tgtcagcccc 1500 atgatcttta acattgtggt tgattgcatt ctgaaggcgt ggaggacaga atttcgtgca 1560 acggtggcac gggtggaagc aattttttat gccaatgacg gtgaattgtt gagtgagagt 1620 actatggcct tgcaggctgc gttaggatag ttttcggact acttcgcgtg tggggggctt 1680 cggatgaacg tggataaaac aaagtcgctg gtgtcggacc ccggtccaat ccagcttggc 1740 atgtctttgc ccgctttcct tcacaggacg actggagaag ggggtaactc gagattgcgg 1800 cgtgcaaaga aggttacgtg cgagatctgc ggccacgact ttcgccaaac tttgctgact 1860 cggcacatgc aggcgatcca tcatgtagat ttgactcctt gagcgcccct ttcgcgacgg 1920 ctgttcaata gcaaagagga atatttggta agcataccca agttgaagga acccatttag 1980 gtagtgtgtc cggtggacgg gtgccacgcg acggcaagtc aagcacatga tatgcgaaag 2040 cacttcatgc tgcggcatcc cactgacagg atatgtattg aggaggaagg agtgcaggca 2100 ctacccaagt gcaaacattg cggaatgcac gtggcaacaa agacagtggc tcatcatttc 2160 cgtacaaagc tatgcgaggt gggccagaag cggaaggccg cccgcaccca ggagtggacc 2220 gcccagaccg caacctccca tcagttctac attgacgggg tagcagtggg ccgggtgaat 2280 cagttccgac acttggggaa caaatccttg tgaatgacag caatgacggt gcaatccgct 2340 acaatattag caaggcaagg gctaagtggc atatgatcgc tcgagtttta gttcaagagg 2400 aggcgtcacc ccgcgtcatg ggcatgttct acaaggtgat tgtgcaatcg gtcctgttat 2460 actgcagtga gacatgggtt cttaccctag ctcagtatga ttggctcaat gcatttcatg 2520 tgaccatagc atggcggata tcaggtttaa aggtttggta tgatccggac acggagacct 2580 ggttaaaacc ggcgtccaac atggcactgg aaagggcagg actacacccg ctggcaatgt 2640 acttgaaacg ccggcgagac tacatcctac cctatgctag gaatctccca gactttgcat 2700 cccttcgcga ctgggctgta acacggaaca ttgttcagag aagcttttgg acggatgatt 2760 cagacttatc caaactacaa gaggacatt 2789 // ID PILN1_PT repbase; DNA; PLN; 414 BP. XX AC AB016145; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus thunbergii LINE retrotransposon PILN1_PT, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; LINE; PILN1_PT; KW endonuclease; long interspersed nuclear element. XX OS Pinus thunbergii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-414 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016145; Positions 1 414. XX SQ Sequence 414 BP; 166 A; 64 C; 97 G; 87 T; 0 other; ttggaatgta agaggtctaa atagcagagg caaacagaga cacttaatgg aaaggttaag 60 aaaagaaaaa ttgcaactca tgttgctaca agaaacaaaa atcacaggag gaagaatgga 120 ggaaatacta aacaaaataa aaccaaggta cgaatgcatg accatagatg caaaaggaag 180 tgagggtggt atagcaacac tgtggaaccc agcagaaatt acattagatt attgggtggg 240 catgaaatga atcctcacgg ggcagttcag gctaattgga aacagagaat agtttctagt 300 ttctgcagta tatgaacctc atattccagt agaaaaagga aacttccttt agcaaataca 360 gaagctaggg aaaattcatg aggaaaaaat ctggctcttc cccggggact tcaa 414 // ID Gypsy-30_PSo-I repbase; DNA; PLN; 5937 BP. XX AC AAQY01000528; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_PSo_; KW Gypsy-30_PSo-LTR; Gypsy-30_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5937 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000528; Positions 42615 36679. XX CC Positions [4663-5157] - Integrase core CC 'AGGTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 993..2213 FT /product="Gypsy-30_PSo-I_3p" FT /translation="MPKFSGTKDDDVADYLFSAKLYFESKNIKYGADTPQQ FT RPLSLLVANLKGPTAAWYREYVSHDGNFLHSVSQFEELLTSEFTTPDHQEH FT LRDQLLRLRQNNFACLEDYVSAFRHIICKVEDMSDINKVMHFQKGLVVEIR FT QEVKLRQFRNTTDAISFALMYDRTHTVGSRRTHANRGGQGGQRLQQSLHRI FT EEPTPMEIGSSRFVSRDECLRSNLCFYCKEPGHRLATCPKRPARNNPRGVS FT RPPQGRGSFRANQGSFRRIVEDDVSDEDEDDYVDSRDDHVEVIDSLQLNMV FT SIATEPSPNRELLRFEGAMNGRAVGILIDSGAERNIVRPGLAQNCVESAKV FT TAERFYGTTTPARTAQQCLETIRFAGRDFNGFSLIEWEVSTNQDVILGLPW FT LVQFTRLSTGKPE" FT CDS 2390..3655 FT /product="Gypsy-30_PSo-I_2p" FT /translation="MPLGPSSITALECQPLQRIFDNEGDDDTEASSLCVLS FT AAEFETKVKADEYAELYNVTVKTSPKVKSVPSQLQAVLDEFADVFPSELPP FT GLPPSHSIEHEVVLKPGATPSNRAPFRLSKVEQEALDIFVAELLKKDWIEV FT SDSPWVSNIFGVPKKDPATGKFPSRLEWLHSNNPHMPIRWDIDYRLVNAAS FT EVANIPLPHIEQLFDRMVGAVIFSILDLASGYHQMRMSPTSKQYTAFRTNH FT EIYHWNVAPMGLAGMPGTWTRLMRKLLSHLLFVVVYLDDICIFSRSMADHV FT EHLRQVCEILRAHKLYARPDKCDFGQASVDFLDHTISADGLHVDARKTRAI FT AELTEPSNIKDLQRFLGLAGYYRRFIHQFATLVLPLSSLVKKDVAWVWDDG FT QCQAFNAIKLALQHAPVLRLQTSTSRSL" FT CDS 4189..5808 FT /product="Gypsy-30_PSo-I_1p" FT /translation="MLAVKQPAARAHVVGTAQWRMRLIAASMEDSTVISSL FT QLDNQTKRAFQKAYSKDSVFKPLWKSGRPSEEYEIIRGLIYLKSNDSLRRL FT CVPNNRKLRFDVIHNAHDAATMAHPCIRRTQLAAAQWYFWPSMDLDIKAYV FT QSCESCMRYKSSTGRRAGKLQPIPLPAACWDVVSTDFITHLPVSDGFDAIM FT VVVDKLSKRPVYIPTHTTATAEDIAKLFFNNVIRYYGIPSTIISDRDPKFT FT SKFWKALVQLMKIKTAMTTAHRAQANGQTERQNRTLEDSLRCSVSYHGNDW FT NEHLPMIEYAHATLVSSSSKLSPFFVDTGRHPKNPLGSLESDQPVARSRVE FT YASRFVQHRQEVIERARKNRLDAQEAQKKFYDRRRAANPFKVGELALLSTQ FT DMNISHATAETTLRSRKFIPRFIGPYPILELHGNVALLDLPANLKHISPRF FT NIDKLKVYNSNPDSFVGRVIPKSTPVIFDDDGEPLHVVEALIKKRIFNSQP FT EYLVKWHGLPHHENTWERERDIKHISHWQALLKDLRQRNRVARA" XX SQ Sequence 5937 BP; 1293 A; 1726 C; 1651 G; 1267 T; 0 other; cttggtagca cttgcgaagc cgacgcgcgc ttcagtccag ttccggttcc agttccagtc 60 ctcgttccag ttccagtgcc gccacgcgtc gccggtgtgc acgccgtcca gcctcgtccg 120 tcccgcattg ccgttgcgca cgccgtcttc ctcgcatccg ttcttcggtg tgctgcacct 180 gtacctctcg ccgttcaact tctccgggtg cgccgcgtgc gtgacctcgt ccgcagcctc 240 gtccgctcgt cgccgacggg gcctccattt tcgccgagct cgctcctttt ctttctgggg 300 gaggagtggc gacgcacatt gtcacacgtc acttcgtgtc gacatctcat tggtgtattt 360 agcccaatta cttccgcgtg tccatacgcg gcacccacct cgaccttccg cttgtcacct 420 cgactgtcac ttgcaaacag tgcgcagccg agtgtaacat ctgcgtcggt ggccgttacg 480 agtttagtag taggagtctt tgtgctccga ggcgggctcg agctagcgcc ggacggaatt 540 gcaccagttg cttccttcgg gacactggag caagtggttg gtacttgtcg gaagcagagc 600 tccaggtcga gcgtctgtga cttcgttggg gcttacagac attgtcggaa gcagcgctcc 660 agggagtgcc tgcgacttta aactttgatt gatttggttg aggagcttgc gcgccccagc 720 catctattga cgacgtgact agcgtaggcg caaacatgga tgaagcagct atgcagcacg 780 cggacagcgt gcagcagatg ttcgcctcgc tcgcggcgat gatgcgcgag caacaacagt 840 tcatggcgca gacagcggag ctgcagcgcc agatggcggc gacactgcaa cagcaacagc 900 agcagcagtc tgcctcgcag cagcagcagt aaccaccgtc gcacgactct acttctcaag 960 acacgcgcga gtaccgtgcc gagggcatct ccatgccgaa gttctccggc accaaggacg 1020 acgacgtcgc ggactacctc ttcagtgcca aactctactt tgagtcgaag aacatcaagt 1080 acggcgccga cacaccgcag cagcgccccc tgtcactctt ggtggcgaac ttgaaggggc 1140 caacagcagc atggtaccgc gagtacgtct cccacgacgg gaacttcctg cactcggtct 1200 cgcagttcga ggagctgctg accagcgagt tcacgacccc cgatcaccaa gagcacctgc 1260 gcgaccagct cctacgccta cgccagaaca acttcgcctg cctcgaagat tacgtgtcgg 1320 ccttccggca catcatctgc aaggtagagg acatgagcga tatcaacaag gtcatgcatt 1380 ttcagaaggg gttggtcgta gagatcaggc aagaggtcaa gctgcgccag ttccgaaaca 1440 cgacggacgc gatttcattt gcactgatgt acgaccgaac gcacactgta ggatcgcgtc 1500 gtacccatgc gaaccgcgga ggtcaaggtg gccaacgcct tcaacagtcg ttacatcgca 1560 tcgaggagcc aacaccgatg gagattggaa gctcgcgctt cgtttctcgc gacgagtgtc 1620 tgcgcagtaa tctgtgcttc tactgcaagg aacccgggca tcgcctggcc acgtgcccaa 1680 agaggccagc gcgcaacaac ccccggggtg tatctcgtcc tccacaaggg cgcgggtcat 1740 tccgcgctaa ccagggctcg ttccgccgca ttgtcgaaga cgacgtatcc gacgaagacg 1800 aagacgacta cgtagacagc cgtgacgacc acgtcgaggt cattgacagc ttgcagttga 1860 acatggtgtc catcgccacc gagccgtcac ccaatcgaga actgttgcga ttcgaggggg 1920 cgatgaacgg gcgggcagtg ggaatcttga tcgacagcgg tgcagagcgc aacattgtgc 1980 gccctggcct cgcccaaaac tgcgttgagt ccgccaaggt cacggcggag cgcttttacg 2040 gtacgacaac gccggcccgt acggcgcaac aatgtttgga gactatccgc tttgctggca 2100 gagacttcaa cggattttcc ctcattgagt gggaagtgtc gacaaatcaa gacgtgatcc 2160 tcgggcttcc atggctggtg cagttcaccc ggttatcgac tggcaaaccg gagtgatgcg 2220 gttccccaac aagcgctaag tgcatgattt cagttcggtg aacgacagtc tcgaggtagc 2280 gggaccgtca gtggcttcag tggaagtgaa acctgagttc cttcagcacc ccctgccccc 2340 gaatctgcgg cagcagcttg acgctcgtgt aaaggcaggc tacttcagta tgcctttggg 2400 gccaagctcg ataacagcgc tagaatgtca gccattgcaa cgcatctttg acaacgaagg 2460 cgatgacgac acggaggcat cgtcgttgtg tgtcctctcg gcggcagagt ttgagacaaa 2520 ggtgaaggcc gacgagtacg ccgaactgta taatgtcacg gtgaagacgt cgcccaaggt 2580 gaagtcggtg ccgtcgcagc ttcaagcagt acttgacgag ttcgccgatg tctttccgtc 2640 agagttgccg cctggattac caccgagcca ctcaatcgag cacgaagtgg tcttgaaacc 2700 aggtgcgacg cccagcaacc gcgccccctt ccgtctctcg aaggttgagc aggaggcatt 2760 ggacatcttt gtggcagagc tgctgaagaa ggactggatc gaagtgtcgg actctccatg 2820 ggtatcaaac atctttggcg tgcccaaaaa ggatcccgcg actggcaaat tcccatcacg 2880 cttggagtgg ctacattcga acaatccgca catgcccatt cgatgggaca ttgactatcg 2940 cttggtgaat gcggcctcag aggttgccaa tataccgctg ccgcacatcg agcagctctt 3000 tgatcggatg gtgggagcag tgatcttctc gattctcgac ctcgccagtg gataccacca 3060 gatgcgtatg tctccgacgt ccaagcagta cacggcattc aggacaaacc atgagatata 3120 tcattggaac gtggcgccta tgggcctggc cggcatgccg ggcacgtgga cgcgcctgat 3180 gcgcaagctg ctgagccatc tactgttcgt ggtcgtttat ctggacgaca tctgcatctt 3240 ctcgcggtcg atggccgatc acgtcgagca cttacggcaa gtctgtgaaa tccttcgggc 3300 tcacaagctt tacgctcgtc cggataagtg cgacttcggt caagcttcgg tcgacttcct 3360 tgaccacacc atctcagctg atggcttgca cgtggacgct cgcaagactc gagccatcgc 3420 cgagttgaca gagcccagca acatcaagga tctacagcgc ttcttgggtc tcgccggata 3480 ttatcgtcgc ttcattcatc agtttgcgac actggtactt ccgctgagct ctttggtcaa 3540 gaaagatgtg gcgtgggtat gggatgacgg tcagtgccag gctttcaatg ccatcaagct 3600 tgcgctccag cacgcaccgg tactacgtct gcagacttcg acaagccgtt cattgtgaca 3660 acggatgcta gtcacgcgtg cattggtgga gtcctctctc agctgcatgg cggcaatgat 3720 ctccccgtgg catttttcag caagaagctt ggtccgcatg agctgaactg gcctgttcac 3780 gagaaggaac tctttgcgat caaacaagcg ctcgcccgtt ggcgccatta cctccatgga 3840 gtctcgtttg aagtgtacac ggacaactcg gcgtgcaagt ggtttctaca gcatccccgc 3900 ctgtctggtc gcctggctcg ctggctggac ttttttgcgt ccttcctgtt cacgctgcac 3960 catcgtccag gcactttgaa tgtcgtcgcc gacgcgttat cgcgcccccc tgatgcttct 4020 tcaagtctgg gggaggaact ggaggctggt gaaaccgaac ccgagccgct ggcagtgtgt 4080 acggcgtgtt tgacgtcgcc gacatgcacg aacatttgcg acgcggcatc gcgtcgtact 4140 aaggctacgg agaagctcca aagcataccg actcgtgatc aagccgtgat gcttgccgtc 4200 aaacagccag ccgcaagggc acatgttgta ggcacggcac agtggcgtat gagattgatc 4260 gcagcatcga tggaggacag cacggtgata agctcacttc aactggataa ccaaacgaag 4320 cgggcgtttc agaaggcata cagcaaagat tcagtcttca agccgctgtg gaagtccggt 4380 cgcccgtcgg aagagtacga aatcattcgc gggttgatct atttgaagag caacgacagc 4440 ctacgccgcc tctgtgtgcc aaacaaccgg aaacttcggt tcgatgtcat tcacaacgcg 4500 catgatgcgg cgaccatggc gcacccatgc atccgtcgca ctcagcttgc tgcggcacag 4560 tggtacttct ggccgagcat ggatctggac atcaaagcct acgttcagag ttgtgagtca 4620 tgtatgaggt acaagtcaag caccggacga agagcaggaa agcttcagcc gatcccgttg 4680 cccgctgcgt gttgggatgt tgtctcgact gacttcatca cgcatttgcc tgtgtccgac 4740 ggctttgatg cgatcatggt cgtggtggac aagttgtcaa agcgtccagt ctacatcccg 4800 acgcacacca cggcgactgc ggaagacatt gccaagctgt tcttcaacaa cgtcatccgg 4860 tattatggta tcccatcgac catcatctcc gaccgggacc cgaagttcac gtcgaagttc 4920 tggaaagcac tggtacagct gatgaagatc aagacagcga tgacgactgc ccaccgagcg 4980 caggccaatg gccaaactga gcgtcagaat cggactctcg aggactcgtt gcgatgctct 5040 gtttcgtacc atggcaacga ctggaatgag cacctgccca tgattgagta tgcgcacgca 5100 acactggtgt ccagctcgtc gaagctgtcg cccttcttcg tcgacaccgg tcgtcaccct 5160 aagaacccat tgggtagttt ggagagcgat cagccggtgg cgaggtctcg tgtggagtac 5220 gcgtctcgat ttgttcagca tcgtcaagag gtgatcgaac gtgctcggaa gaatcggttg 5280 gatgcgcaag aggctcaaaa gaagttctac gaccggcgtc gtgcagcaaa cccattcaag 5340 gtcggtgagc tagccttgct gtcgacgcag gacatgaaca tctcgcacgc caccgcggaa 5400 acgacgcttc gctcacggaa gttcatcccg cgcttcatcg gtccgtaccc gatcctggaa 5460 cttcacggca acgttgcgct gctcgatcta ccggccaact tgaagcacat cagcccacgc 5520 ttcaacatcg acaagctcaa ggtatacaac agcaaccctg atagcttcgt cggccgtgtg 5580 atcccgaagt cgactcccgt gattttcgac gacgatggcg agccactaca cgttgtcgaa 5640 gctctgatca agaagcgcat cttcaacagc caacctgagt acttggtcaa gtggcacggg 5700 ctccctcacc atgagaacac gtgggaacgc gagcgcgaca tcaaacacat cagccactgg 5760 caagcgctgc taaaagatct tcgccaacgc aatcgagtgg cacgggccta gtggaattct 5820 cttgaacaga tttttcacgg tactgttcct tacatcgagg gtctacggta ctacaaactt 5880 caacttcggc gacttcaacg ttcaaggtgc cgggactcac tcaagtcggg ggagggg 5937 // ID Gypsy-7_ES-I repbase; DNA; PLN; 8430 BP. XX AC CABU01005385; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_ES_; KW Gypsy-7_ES-LTR; Gypsy-7_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-8430 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005385; Positions 23056 31485. XX CC Positions [3818-4351] - Reverse transcriptase CC Positions [6241-6726] - Integrase core CC 'ATCT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1589..5803 FT /product="Gypsy-7_ES-I_2p" FT /translation="MTKRNVAGRWEQSRAKGRDQRRISGGLGVSAEQSPRE FT NIEDDSQKGGIVEEEGGRSVVHNTEGDGLATRSFSSNHGKRRFSVSKEYSK FT QGGSNYPKLHVVSGADTLNCTGVGRGSKNVLGSRPPQEILGHSVSQDARVQ FT LQEIITSKTNRIFPEVGVQSTPPSSDQTKSSIDKKGNVGGNAKPAENALTS FT QRKKIRKANSPRTVKYPPDPQAEHAVGRNGAKKGSINRDTRMEKSVTVDRA FT GSKQNHETVALQVIREEGVIGDASASDNSLKREVEVTTQEGGNFGETQEGT FT DRIFAVQGSVSSVSGQRSDAVYPPPPFTFAAGEAVDYLSPFTRSVGGDLTM FT DRHRHTTIVQVFAGSRATKMMSWEALLDTGSPASFVQERCVQKMLACGSAS FT DDSIETGLNKKWGGFHGVPLVTDRRMRLNIEMWKGGKSAPVHFGTPTVRTS FT VYAYIVPDAAMGHDLILGRDSWADFPVRRFQDVSDTETIVTFVGSNTDKVA FT GDHRFDEWVGNAVGMVETEGDGKVVVKSNGRRRRLPNAMSWVEVKLTNLDG FT SDAAVGTYRVQFGKKWFPQEALVENGTSEIPLRRVGDSSCLVKPNDILGYG FT GEPLEVVNLDDARLVENEEFKNVFAVKEGEEADTPNDEPPADVMSSLNGAQ FT QVAFRRLWQRVPPHIRDVHFDFNAKLWEPEDIDKLGDLLCKFEHRFSKGGS FT DLGRVTVDPFRIILKPGAQPVQQRPYRYSPVMNEKVQIEIDKLLLAGVLRR FT SYSNWASPLVVVAKANGGVRLTVNYTRINKMSVIPKLPIPIVEDILAELDK FT SKIFSTLDLVSGFFQCSIEEDSIPITAVITSTGLYEFLSVPQGLSSSPGWF FT HSVMARVCDGLERVRLFIDDVIVFSRDGAEHVRDLERFFERMVKFNLKLAP FT KKTNLGVKVVTFLGHQVTAEGIGPDPGKVRPLREVPMPTNVSQLRSLLGSL FT SYYRKFLRNMSAKLKPINAMLKKGAKFAFTADHVAVVRKMMDILSGPEVLA FT FPCYEGAISGERPFRLTADASISGLGAVIEQEQRDGSIRPLCFSSRSTFPN FT ETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNMGSLAEKNNR FT VQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDLRLTDPS FT DLDVYMIGASGVLPSRLGPVYTEREALAGSNHRDDFVVGESGCTSASLTTD FT ELADKTWALIQRGKGVSNPLPDGACVPDDTRLVEPSGEVVSGQFEPGLILH FT AVPLTEVGRRLLGLVEKPRVYAISHEGGSASGGGGGSSSNARESGAVAGGR FT GGSNARSSRAVARGRGRGGAARGRGVAGRGRGRGSGGRGPAAPPLPQIPLQ FT EYDEEQTQAAIEFGENLCDKTASDWADIQEEDDTARLAIAAH" FT CDS 6262..7947 FT /product="Gypsy-7_ES-I_1p" FT /translation="MVSFDYLGPLPKTTKDKEYVFLVVDLFSRHAEGYSLT FT KAQKNAKGFVSIMVNDYIARWGCPHTMLSDRGAEFANEVAKGVYKTLGTVK FT KFTSSYHPQTNGMVERLNHTLCQMLSHLVADDQANWDEMLPHAVAAHNNNV FT SRGTGLAPNVVHIGRYPRLPMTILEGRGVSGNQGLKQDQLDYLNLMRDKQR FT KAYELVREQDKITKAKHEKSNQVLNSIVGKRPKYKKGDWVLVYDEKSTISG FT GGEHVLKSRENSRGKEKSFALIPKLAHNWTGPYKVLIVGPGDGLDGEKVGP FT NILFLDVNKDEPGKNINERVTVYRCKKCYTQHENEDRPRFLPWGFSKYVLN FT KFSELAPPFHLTAEDVEEEVDSKELVPCKISRHRICRGISGKGAAQYYTHW FT TGLTKCTWEHEVELEQYGDVVLKYWNEQPEQSAGGNIRYRRYRIQGAKRTI FT ASRKGERHAQKDYKLYCDTRGRPSLRSRAMIGAYLYFKTVKAGWQFAKVVQ FT VTPDPRWEEGIKHTIKLVDIGKNINVALVEKNLTTDNLVQDPGTWCWHAHR FT TAKSVKKYMFELEDD" XX SQ Sequence 8430 BP; 2237 A; 1427 C; 2866 G; 1900 T; 0 other; gtggcaccga aggaggggct gtgtttaatc gcactgcttg cggtgtggtc ttcccatggc 60 acaaagaggt aagggggggg aagtgaccag cgatgaaggg agggttggac actcgggcca 120 caggggtgga ggtggttcta agggcggtgg ggtggatgat gaagggttgt cgacgggagg 180 ggatgagtcg actgacaaag gggatgagtc cgctgataaa gcgaggacag tgaaggggga 240 agtgtggaaa gagacacctc gggaggaggg gaaaaagagg tcgggtggag acgttgaagt 300 gggggactca cgtcagacaa ggaaagtgct atctaagggt gcacagcaga catccgagga 360 tgcacaacgg agagaggctg aggtctctgg gggaaaggga agagggcctg agggcaaggc 420 gggttatgag ggtattgcgc acgctggggg ggggagtgcg tcgcgaaagg gtgggacgga 480 tgagttgttg acgggaaggg aggagtcggc aacaaggccg ttgccaaaga ggggggaaga 540 gttgacaaag gggcctcaga aggagaagaa aaaaggggtc gggtgaagca cttgaagttg 600 gcgggatcat gagtcctggg actaagggtg tacagcagac acctgaggat ggacaaggga 660 cagtgggtct ctggagaaaa agggtggatc gcctgcgggc aagaagggct atgcgcatgc 720 tttaggtgga agtgtgttgc acgggggagg gagtggagat gtgttgctgt gttgcaatgt 780 gtgcacatgt gcctccaagt cgggaagggg gtctggaaaa gggcctgggg tgaaaggtca 840 aggcgttctg agatgtcggg aggggaaggc aaagtgcctc agtgtggatg agagaacggc 900 gagggatgca cctgtccatg caagggttgc ggctgttgga gccacgcagg gctagatact 960 caagagtgta tgtgaagaga gctcaagggc atcactgcta aggcacaatc taacgacagc 1020 agcccgaatc gtgcgtatgt caggtggcga tgacgatgtg caaaaagagc aaagtgggat 1080 aggtggttga accgcctgag gagctggaaa gggctaaacc gcatgaagat gaggcggagg 1140 gcggtgcagg actgatggtg cgacggtcag ttgaacagct cgctggcagc acctgggtca 1200 tacagcttgg tggatattca ggcaagagag ggagagatga atgagaaggg gggtggggag 1260 aaaatatcaa aatatccata cgtcatgcgg ggaagtgatc aaaaatgaaa atacatatgc 1320 tctcgcggga caagggtgga agagatgaag gagaaagggg tgaaaggtat tgcgagaata 1380 aacagaaatt ccgcgaggtg gaggtgaagg gtgaaagata ttgcgagaat aaacagaaat 1440 tccgcgaggt ggaggtgaag ggtgaaagat actgcgagag ttaacagaaa ttcccgcgag 1500 gtggaggtga agggtgaaag atattgcgag aataaaccga aattccgcag ggtggaggtg 1560 cagggtgaaa gaggtcccgg gtattatcat gacgaaaaga aatgtcgcgg gcagatggga 1620 acaaagcaga gccaagggcc gggatcaaag aagaatctcg ggagggctgg gggtaagcgc 1680 agaacaatca ccacgcgaga acatcgagga cgactcgcag aagggtggga ttgtagagga 1740 ggaggggggc cgttcggtgg tgcacaacac cgagggtgat ggcctggcga cgaggagctt 1800 ctcgtccaac cacggaaagc gacgtttttc agtatctaag gagtattcca agcagggtgg 1860 aagtaattat cccaagctgc atgtggtttc gggtgctgat acattgaact gcacgggtgt 1920 cggccgtggg agcaagaatg tattggggag taggcccccg caagaaattc ttggtcatag 1980 tgtttcgcaa gatgcacgtg tacagcttca ggaaataatc actagtaaga caaacaggat 2040 ttttccagaa gtaggggtgc agagcacgcc cccttcgtcc gatcaaacga agtctagcat 2100 tgacaaaaag ggaaatgttg gtggcaatgc aaaaccagcg gagaatgcgt taacctctca 2160 acgtaagaaa atacgcaagg caaattctcc gaggacagtg aaatatccgc cggatcctca 2220 agcggagcac gctgttggtc gaaatggtgc caaaaagggg tcgattaatc gggacactag 2280 aatggaaaaa agcgttaccg ttgatcgtgc tggaagcaag cagaaccatg aaactgttgc 2340 tttacaagtg ataagagaag agggcgtgat aggggatgca tccgcctctg acaattctct 2400 caagcgtgag gttgaggtaa caacgcagga gggagggaat tttggtgaaa cacaagaagg 2460 aacagatcgc atttttgccg tacaaggatc tgttagttct gtgtcagggc aaagaagtga 2520 tgcggtgtat cctccgcctc cttttacgtt tgctgcaggt gaagcggtgg actacctgtc 2580 accatttact cggtcggtcg gtggggattt gacgatggat cgacatcgac atacgacaat 2640 agtgcaagtg ttcgcggggt caagagcgac caagatgatg tcgtgggagg ctctgttgga 2700 tacgggcagt ccggcatcgt ttgtacaaga aaggtgtgtg caaaagatgt tggcatgcgg 2760 ttctgcttca gatgatagca tcgaaacagg gctgaacaag aaatggggtg ggttccatgg 2820 ggtgccgttg gttactgatc gaagaatgcg attaaatatt gaaatgtgga agggcggaaa 2880 atcagcgccg gttcattttg gtacaccgac ggtacggacg agtgtgtacg cgtatatcgt 2940 gccagacgca gccatgggac atgatctgat actagggagg gatagctggg ctgattttcc 3000 agttcgcaga ttccaagacg tgtcggacac agaaacaatt gtcacttttg tcggttcaaa 3060 tacggataaa gtggcaggtg atcaccgctt tgatgaatgg gtgggtaatg cggtgggtat 3120 ggtggaaacg gaaggtgatg gaaaggtggt ggtgaaatct aatggtcgta gacgacggct 3180 tccaaatgca atgtcatggg tggaggtaaa attgaccaac ctagatggca gtgacgcggc 3240 ggtagggacg taccgtgtgc aatttgggaa gaagtggttc ccgcaggaag cattagtcga 3300 aaatggcacg tctgaaattc ctctgagaag ggtaggggac agttcgtgtc tggtgaaacc 3360 aaacgatatt ttggggtatg gtggtgaacc cctggaggtg gtaaatttgg atgatgctcg 3420 tttggtggaa aatgaggaat tcaaaaatgt gtttgctgtt aaggagggtg aagaggctga 3480 cacgcctaac gacgaacctc ccgctgatgt tatgtcttct ttgaatgggg cgcaacaggt 3540 ggcgttcagg cggttgtggc agagggtgcc tccgcacatt cgagacgtcc atttcgactt 3600 caatgcgaaa ctgtgggagc cggaggacat tgacaaacta ggtgatttgt tgtgcaaatt 3660 tgagcatcgt ttttcgaagg gtggttcgga tttaggacgg gtgacggtgg atccgtttcg 3720 aatcattttg aagccggggg cacagccagt gcaacagaga ccataccgct attcgccggt 3780 tatgaacgaa aaggtgcaga tcgaaattga caaattgctg ttagcgggtg tgttgcggag 3840 atcgtacagc aattgggcga gtccgttggt ggtagtcgcg aaggctaatg gtggtgtgcg 3900 gttgacggtc aactatacgc gcatcaataa aatgagtgta atcccgaaat taccgattcc 3960 aatcgtggag gatattttgg cggaattgga caaatcgaaa atcttcagta cgctggattt 4020 ggtcagtggg tttttccagt gcagtattga agaggacagc attccgatca ctgctgttat 4080 cacgtctacg gggttgtacg aatttttatc cgtgccgcaa ggtctcagta gtagtcctgg 4140 atggtttcat tcggtgatgg ccagagtatg tgacggactg gaacgtgtgc gtctgtttat 4200 cgatgacgtt atcgtttttt ccagggacgg ggcagaacac gtgcgcgacc tggaaaggtt 4260 tttcgagcgc atggtcaagt tcaacctgaa actggcacct aagaagacga acctgggggt 4320 gaaggtggtg acgttcttgg gacatcaagt cacggcggaa gggatcgggc cggacccggg 4380 aaaggtcaga ccgctgcgtg aagtgccgat gcctactaat gttagccagc tgcgatcgtt 4440 gttggggtct ttgtcgtact atcgaaagtt tctgaggaac atgtcggcaa aattaaaacc 4500 gatcaatgcg atgctgaaaa agggggcgaa gtttgcattc acggctgatc atgtggctgt 4560 ggtgaggaaa atgatggata ttctgtcagg tcctgaggta ttggcatttc cgtgttatga 4620 gggtgcgatc tcgggagagc ggccgtttcg tttaaccgct gatgcgtcga tttcgggctt 4680 gggagccgta attgagcaag agcaacgaga tggaagtatt agaccgctat gcttttcgag 4740 cagatcaaca ttcccaaatg aaacgagatg gagtccgact gagcttgaag cgggtgcgat 4800 agtgtgggcg ataaagaaga atcgaacact attttatggc attccctttg aagtgtacag 4860 tgaccatcaa cccttgcgga atatggggag cttggcagag aaaaacaatc gcgtacagag 4920 gtggtatgat ttcctgtcag cgtacacgta tgaacttaag tatcgaccag ggcgagagaa 4980 tgcaaatgcc gatttgatgt caaggttgcc attgcctgcg acgaaagagg atgaggcacc 5040 agatctcagg ctaactgatc cgtctgatct cgatgtttat atgataggtg cgagtggggt 5100 gctaccttcg cgattgggtc cggtgtatac cgagcgagag gcgctcgctg ggtcgaacca 5160 tcgcgatgat tttgtggtgg gggaaagtgg ctgtacatcg gcaagcctca ctacggatga 5220 actggcagac aagacgtggg cgctgatcca gagggggaag ggcgtgtcca accctttgcc 5280 tgatggtgcg tgtgtgcctg atgacacccg gttggtggaa ccgagtgggg aagtagtcag 5340 tggtcagttt gaaccagggc tgattttaca tgctgtacct ttaacggaag ttggcagacg 5400 cttgttagga ttggtggaaa aaccgcgagt gtatgctatt tctcatgaag gaggcagtgc 5460 ctctggtggt gggggaggta gtagcagtaa cgctcgtgag agtggggctg ttgctggtgg 5520 taggggtggc agtaatgctc gtagtagtag ggctgttgcg cgtggaaggg gtcgaggtgg 5580 tgcggctcga ggtagagggg ttgctggtag gggaagggga aggggttccg ggggcagggg 5640 tccggcagca cctccgttgc ctcaaattcc gttgcaagag tatgatgaag aacagacgca 5700 agcggcaatt gaatttgggg agaatttatg tgacaagacg gctagtgatt gggcagatat 5760 tcaggaggaa gatgatacgg cgcgattagc tattgcggcc cattgaagga catgccgacc 5820 caaagcgcat gaagaaggaa gatattccag atgatgtaga tgttgacttg gatgagttga 5880 agcggttggt tgcacagggt accttgttgg tgttaccgaa ttctaagcat ttgttggtaa 5940 ggaaggagtc gaaaccccct gcagaaaatc aaaatcgaaa tccagggcaa tttgagaggt 6000 tggtaggaga acagccagtt cggacgtatg tgcctaggat gttgagaccg tgggtcatgg 6060 attgcgccca caaagaagcg gtgcatttgg gagagaaggt gactttaggt attttacaga 6120 gggtgtattg ggggatagga atggctgaaa gtgtgcgggt ggtggatccg taggtgttat 6180 tcttgtcagt ttcggaaggt gccgcggcat acgaagtgtt ggccgttagt atctttgcct 6240 cttccgagca gaccggggca gatggtgtcg tttgattatt tgggtccgtt gccgaaaacg 6300 acgaaagaca aggagtatgt gtttctggtg gttgatttat tcagcaggca tgcggagggg 6360 tactcattaa cgaaggcgca gaagaatgca aagggttttg tgtctatcat ggtgaacgat 6420 tatattgcga ggtggggttg tccgcacacc atgttgtcag ataggggagc cgagtttgcg 6480 aatgaggtag cgaaaggagt gtataagacg ctgggaacgg tgaagaagtt tactagctca 6540 tatcatccgc agacgaatgg gatggtggaa cgtttaaatc atacgctgtg tcaaatgttg 6600 tcgcacttgg ttgcggacga tcaggcgaat tgggatgaga tgttgccaca cgcggtagcg 6660 gcacacaaca ataacgtaag ccgggggacg gggctagcac ccaacgtagt acacatcgga 6720 aggtacccta ggttgccgat gacgatcttg gagggaaggg gcgtttcggg aaatcagggc 6780 ctaaagcaag accaattgga ttatttgaat ttgatgaggg ataagcagag aaaggcgtac 6840 gagttggtaa gagagcagga taagataacc aaggctaagc atgagaagag caatcaggtg 6900 ttaaactcga tagtaggaaa gaggccgaag tataagaagg gagattgggt cttagtgtat 6960 gatgagaaga gtacaatttc tggtgggggg gaacacgtgc ttaaatcgcg agagaatagt 7020 agggggaaag aaaaatcgtt cgcgttgatc ccaaagttgg cacacaattg gaccggtccg 7080 tataaggtgt tgatcgtggg tccaggtgat ggtcttgacg gggaaaaggt gggcccgaat 7140 attttgtttt tggacgtgaa taaggatgag ccaggaaaga acattaatga gagggtgacg 7200 gtgtatcggt gtaagaagtg ttatactcag cacgagaatg aggataggcc taggtttttg 7260 ccgtggggct ttagcaagta tgtgttgaat aagttttcag agttggcgcc tccgttccat 7320 cttacggcag aggacgtgga ggaagaagtg gatagtaagg aattggtccc gtgtaaaata 7380 tcaaggcaca ggatttgtcg aggtatcagt gggaaggggg cggctcagta ctacacgcat 7440 tggacggggt tgactaagtg tacgtgggaa catgaagtgg agttggagca atatggagac 7500 gtggtactta agtattggaa tgagcaaccg gaacaatcgg ccggaggcaa cattaggtat 7560 cggaggtacc gtattcaggg tgcaaagagg acgattgcta gcaggaaggg agaaagacac 7620 gcgcagaaag attacaaact ttattgtgac acacggggta ggccgagtct tcgaagtagg 7680 gcgatgattg gtgcatattt atattttaag acggttaagg ctgggtggca gtttgcgaag 7740 gtggtgcagg tgactccgga tccgaggtgg gaagaaggca tcaagcatac tatcaagctg 7800 gtggacatcg gcaaaaacat caatgtggca cttgtggaga agaacttgac gacggacaac 7860 ttggtacaag atccaggaac gtggtgctgg catgcacacc gaacggcgaa aagtgtcaag 7920 aagtacatgt ttgagttgga ggatgattaa gtgttgcgaa tttttgaagt gcgtaggact 7980 gcggaaaagt gtgccaagtg gtgcagtcga atacgggtca aaatttgtgt ggtgaatttt 8040 tgaagtgcgt aggactgcgg aaaagtgtgc caagtggtgc agtcgaatac gggtcaagat 8100 tcaggtagta ggtctagtgt ttttgaggtg cgtaggactg cggaaaagtg tgccaagtgg 8160 tgcagtcgaa tacgggtcaa aaattgatgt gttgagcaat tgttgttttg gctaaagaat 8220 gtaccttgcg atggagtcat attgcagtgg taccacggtc gtgacgaaat tggtgtgtgt 8280 attacaggag ttggtattct ggtgattaac ttttggactt gttgctagag aagatattgg 8340 ttgtaggtca ggtattgcac gctggtgttg agtgtcaatt caaacgagac tgatcgaaga 8400 taagtaggcg ttgaacctgg ggggggcgaa 8430 // ID Gypsy-43_PIT-LTR repbase; DNA; PLN; 250 BP. XX AC AATU01004061; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_PIT_; KW Gypsy-43_PIT-I; Gypsy-43_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-250 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004061; Positions 3015 2766. XX SQ Sequence 250 BP; 66 A; 57 C; 74 G; 53 T; 0 other; tgtagtgggg cgacggtctt caggacctga ccacgcactg tgctggcggc cgaggacggt 60 cgcagcagga gctggcgtag aataagactc agaggtcgga gacttgaggc atatacttag 120 acgatgatgt aggagtagct ggagagagtc tcaactatct cattctggat tttgcagagt 180 acaatacaag caagagttca aaggaagcgc cagcttccct cgcaagtctg ttcaatcgga 240 tcccactaca 250 // ID Copia-5_PIT-LTR repbase; DNA; PLN; 204 BP. XX AC AATU01002448; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PIT_; KW Copia-5_PIT-I; Copia-5_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-204 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002448; Positions 64147 63944. XX SQ Sequence 204 BP; 56 A; 43 C; 55 G; 50 T; 0 other; tgagcagtgc accgctcatg ctcggttcgg gccgttggac cggttcagta gtgaaccgtc 60 ctgtgattgg tccatatagt acaacaccta catggttggt agcgacagtt ggttggagca 120 ggtagtgcac aaaggacagg aaagacaagt ggaagaacga ttacatcaat gttattcact 180 tcggttttta ctagcaaacc aaca 204 // ID Gypsy-20_PIT-LTR repbase; DNA; PLN; 802 BP. XX AC AATU01002124; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PIT_; KW Gypsy-20_PIT-I; Gypsy-20_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-802 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002124; Positions 138896 139697. XX SQ Sequence 802 BP; 195 A; 204 C; 230 G; 173 T; 0 other; tgtggtgtag ggatttccag attcgaccat acgccgacct actttaggtc aagaatcggc 60 ttggtctgat aacccagagc ttaggagcca aggatcacgg taagtactcg gcgatctgtc 120 cggatatgct atccggatag ccgctgagct caacggccgc ctgaagagtc ggtagagatc 180 cgaaacgact acatttcact agatatttgt atgagaagca taggattaaa taggaggagc 240 cgaaaggggc tcccagaaga taacagagca gaattttcct agtccaagac acgtgtacac 300 ttttccggta agtccctgca tagggctgga ttatgcctgc cgtcaatact cgagaggcat 360 agcttgtagg gtattgactg gtagcgccaa gagattaggt cggtccgggt aggacaaagt 420 ctcgctacgc gcgaaagaaa gtcccgcata ctcagcgggc cggtacgtcg gatagcccgg 480 gtgccgtaac acttctagct gagcagcctc tgcgctcggt gacctgtaaa agcgctcgcg 540 cgccgtcgtc catcctttgg tggagggcac agggttgtga acgagctcag ccgaaccaaa 600 ctcggcggag tctcggaagt gatctgcctt ggttagtcgg aaccgagtgg aaacgagcca 660 ctcgtctgtc ccggaagggc cggaccgcga ggagaccacc ctctgcgcag gccatacaaa 720 ccgccgacct aactcggcga ttcgttgtgg tttgtgtaag gaatccacat ctgacgatat 780 ttgtgtgttc tactacacca ca 802 // ID Gypsy-15N_PPa-I repbase; DNA; PLN; 4775 BP. XX AC . XX DT 22-DEC-2009 (Rel. 15.07, Created) DT 22-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW internal portion; Gypsy-15N_PPa-LTR; Gypsy-15N_PPa-I. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4775 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1042-1042 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(1155..1589,1593..1970) FT /product="Gypsy-15N_PPa-I_1p" FT /translation="ECNCSRKQRGPATIGTMQLDISTPQIHQGPSLSVQLA FT CYFIISLFLGPQKLQTNALLDSRASACFLDEEFFKLHKILLVQKSKLVHVE FT VIDGRPLSLSNIIHETILLEISFEGHSSKIIFNIIRILSNPIILGLLWLKR FT YNPSIDRFHKIEFPIEFLWAKPIKKSSTTKPLFFGARTFMKMAKKEMPFVI FT YATPACEEASLLVAISEQYKEFQDVFKKKNADILLEHRPYDCTIDLQEGAQ FT PPFGPIYNLSQNKLLALKDYINKNLAKNFI" XX SQ Sequence 4775 BP; 1607 A; 795 C; 805 G; 1568 T; 0 other; gtttgtcgag actgccttct tatcaatact agagcttaat ccttcttgat agagagtgga 60 ttatccctct tcttgaaggc atctaagcac tttagaggtt gcggagtatc ctcttctaaa 120 ctggtattgt ttagaaattc tttttttttt tctttcaaga tggctagagg taaagatgtt 180 agtatggttg agtctcttaa gtctaagtta gatgttatta taaatacact gaatgcttta 240 gcttatagaa ctactgaaat tgaaggattt tttgcaagat ttcatggtga tgcaagactt 300 ggagcaggtc agcctgtgat gcaactactt tcttaagctt ctacatccaa ggaggtagtg 360 gcacctatac ctcaataaga aaattcacct attcaacaat ataaggagcc tcagattagt 420 cttctaaaaa aatttgatgg cacatgctca aagttttgag gatttgttaa tcaaattcaa 480 ttggtaactt ttctacaacc tgagcgctat ccaacagaag agttgcgagt tggtttagtt 540 ggaaccttgc tcacaagaca agccttatct tggtttgctc ctttatttga gaagagatct 600 ctaatcttga gcaactttga agctttctta gaagcatttg cagaggcatt tggagaacat 660 gacaaggctc aatggacgac aacaaagatt tattcattac gtcaaagatc atgctttgca 720 tcaatttatg catctgattt taggcaattg gcttgtgaca tcaattggga tgaacaagct 780 cttatgagcc aattctattg gagactaagg gatgatgtaa aagacctatt actatcatta 840 tttgatcttc aaacactcaa tgaagctatc aaccaagttg tgaagtgcaa taattgatta 900 tttcaatgcc atcaagatca atgcttgtgg actttgacaa aacaatgcac taaaaatttg 960 tactctgttg cttcaataaa tatattactt ccacactttg gagttgagga tatgcaaatt 1020 gatgtagtat aattcaaacc tcttatagta gaagaaaaga agcattaatt tcaacaaggc 1080 ctatgcttat attgtggtga agaaggtcac aaatctagga attatccaaa gaaacaacat 1140 acaatcaaga ctaggagtgc aattgttcaa gaaaacaaag aggcccagct acaataggga 1200 ccatgcagct ggacatttca acacctcaaa ttcatcaagg tccctctctt tctgtccaac 1260 ttgcttgtta ttttattata tctttatttc ttggcccaca aaaacttcaa acaaatgcct 1320 tattagattc aagagcatct gcttgttttt tagatgagga attttttaaa cttcataaaa 1380 ttcttctagt acaaaagtca aaacttgtac atgtagaagt aatagatggt cgacctttat 1440 ctttaagcaa tattattcat gagaccatac tactagaaat atcatttgag ggccatagta 1500 gcaaaataat atttaatatt attagaatcc tatccaatcc tatcattcta ggacttttgt 1560 ggttaaaaag atataatcca tctatagatt agaggtttca taagattgaa tttcctatag 1620 aattcctttg ggcaaaacct atcaagaagt catcaacaac aaagccttta ttttttggag 1680 caaggacttt tatgaagatg gctaagaaag aaatgccatt tgttatttat gcaactccag 1740 cttgtgaaga agcaagcttg ctagtagcta tctcagagca gtataaggag tttcaagatg 1800 tcttcaaaaa aaaaaatgct gacatattgc tagagcatcg accatatgat tgtaccattg 1860 atcttcaaga aggggctcaa ccaccatttg gcccaatcta caacctatca caaaacaagc 1920 ttttggcatt gaaggattac atcaacaaaa atcttgcaaa gaactttatt tgatattcca 1980 aatctctaac aggtgcacca atactttttg tgaagaaaaa agatggatct ttgcaaatgt 2040 gtattgatta ttgtagcctc aataaaataa tgatgaagaa ttattatcca ttaccattga 2100 tatcaaggct tttggagcaa ctcgatcaag ctaagatcta taccaaaata gatctctata 2160 gagcatataa tttggtatag attaaagaaa gagatgaata gaagataata ttttggacaa 2220 ggtatggaca ttttgaatat aatgtcatgc cttttggatt gacaaatgct ccaactatat 2280 tctagcattt gatgaatgat attttttgag aattcttaga caagtttgtt gtctgttatc 2340 ttgatgatat cttaatctat tccaagactc ttgaagaaca taaagaacat atgagattag 2400 tcttgcaaaa attataagat ataagattat atgccaaatt aaaaaaatgt atattctatc 2460 aaccaaaagt agaatttttt ggatatatta tatccaatga aggcctgttg atggacccaa 2520 agaaagttca agctataata gagtaggcaa ctccaaagac aatataggat gtacaatgtt 2580 tctttagatt tgctaatttc tattagatat ttatcaagaa ttactcccaa gttgctgctc 2640 ttctcacttg gttgacatcc aaagataaat tggaataggg acctcaagca caaaaggctt 2700 tttaagattt gaaggtagct tttattatag ctccaatctt attacatcca aatttcacaa 2760 aggccttcta tttggagatt gatgcttttg actttgcatt aagagctata ctatcacaaa 2820 tggaaaagga tggaaagctc cacccaattg cattctattc tagaaagttt ttagctatag 2880 agatcaatta tgagattcat aataaagagc ttcttgtaat tgtagactct ttttaagaat 2940 ggcatcactt attggaaggt actacacatc ttatgactat atatacagat cacaaaaatt 3000 tggagtattt catgtcagct tggattttga attgctgcca agctcattgg aatatgtcat 3060 tatcttgttt tgattttgtg attacatatc aaccaaaaaa gcaacaagga ctatcagatg 3120 ctttatcaaa gagatcatat cttgctccaa aggctagaga agcagcattt gatcagcaat 3180 ataccactct cttgaagcca aaataatttt atctttgtgc tacttctatg gttatactta 3240 ttgattcaag tttttttgaa caaatttgta cagcatcagc taaggactca ttagtttgta 3300 atatcaagca agtgccctaa caatgacaag ttcaagtttg tagaagatct tttgtatttt 3360 gaagatcatt tatatattct agaaggacca atgcaacttt gtgttcttca atcttgtcat 3420 gatttttcaa ctgcaagaca ttttggattt aacaaaacat tggagcttat ctcttgagat 3480 ttttggtggc ctcaaatgtg gaagactatg aaggactttg tcctcttgtg tgacatttgt 3540 tcaagatcca agaattcttg acatcatcct tatggacttc tatagccact accaatttca 3600 aagcaaccat ggtctttaat atcaatggat ttcatcactg atctactgcc atcagctaca 3660 tttgatgcta tctatattgt tgtggatcga cttacaaaga tggcacattt tgtcccatgc 3720 aaaaagataa tttttggaga agaaatggca aggctctttc ttgataatat atattgatat 3780 catggcctac ctgatgacat catttttgat cgaggacctc aatttatatc aaagttttgg 3840 aaatcttttt ttgagatatt gaaggtggat atcaaacttt cttctacctt ccaccttcaa 3900 atagatggtc aaacaaaaca agtcaatcaa gttttggagc agtatttgta atgtaccatc 3960 aactatcaat aagatgattg gacctcatat ttatctttag tagagtttgc ttataataat 4020 attcttcatg ctttaactca acaaatacca ttttactcca attatggtta ccatccaaag 4080 cttgatttgt taggtacatc aaaggatgaa aatccaacag ctgaagatct tgcaaaacaa 4140 ttgtcacagc tctaaacaac tttgaagctc catttacaag cagctcaaga ttcttacaaa 4200 gcatctttag acaaatttag aaaagaatcc cttacttttt aagttggaga taaagtatgg 4260 cttctttgac aaaatatcaa gaccaattgg ccttgcaata agttggacta tcaaagacta 4320 gggccatttt gtattcaaaa gcaaatcaat ctagtggctt attggttgga actacccaca 4380 tctatgaagg tacatccagt ctttcatgtt tctctcttag aggcttattc aaaatcaact 4440 attccaagaa gaatacaacc atcactgcct tgcattgaaa tagataatca tgtggaatat 4500 gaggtagaaa agatccttga ttcttgacaa agaagaggca agttggaata ttttattcat 4560 tggcgcagct acaatatcaa tgagcatatg tgggaaccag caaaaaatct aattaatgca 4620 ctacaaaaga tataagagtt tcatcgatgc tatcttcaaa aatctaaacc tattttagga 4680 tgacttttct atgaagctac ttagatgttg tatataataa agaaagcaga tatgaaatca 4740 atgctccttg tggaacttgg agttagaagg agaag 4775 // ID Copia-4_PIT-I repbase; DNA; PLN; 4727 BP. XX AC AATU01002813; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PIT_; KW Copia-4_PIT-LTR; Copia-4_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4727 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002813; Positions 8470 3744. XX CC Positions [1756-2250] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 120..1637 FT /product="Copia-4_PIT-I_2p" FT /translation="MSTSSGGQQQPAVGQQQNQQQQNAQQQGANGGARTRR FT VCGSKPPKYTEAGGFDLYHAQIEGYLAQHGCWQVVSGNAVDDPNDPQWIER FT NQFARCALLFGMLPKDSKKVCRMATAREMWTSFEQDKTKRAYASEIRLRRD FT LYAAKFTPGDDMEKYLERLDDLRRQLANMNAEVTDNEMVNIVLQGVVDSHR FT NVVRMFNRNNNGGVAPDLATVVNVLLGEAETDRACAANANNQVETVPVTKV FT MSQRPAIQNTKKRFNKKGGSGKKVTQENRKCFFCKKKGHLRADCYGWKALQ FT KKNGSSSDDTADHEGREVTSMRMVWSGELGDTDNPPVAIRMAWPSDKVGFE FT VDPVHDWMLDSGAGAHVCVNGASFSKLVKDPLLTLDWQGGLKTNELSGPIK FT LEILNGKEVDLPGVRYAPEGVTNLISQRLLEQSGWRPSYSDTDNERLRCKY FT FDKDGIRLEFKKKDDGFYWMKASPIVSVAMMAVRHGKTLENSAVMKWHLKL FT AHLNEKNGSG" FT CDS 1618..4611 FT /product="Copia-4_PIT-I_1p" FT /translation="MKKMVVDKLTEGMEGLSLNDFKRTPLKCIACDAAKMK FT RMSFKRQQGKRSTECGARLMSDVCYVGITTPGGAKYFQLVQDEASRFKWVF FT LLQKKSEAAENVMNLIRQLEKDFKVKMFSCDQGGEFLNRALTTFFREQGIK FT LLTTNAYTPEENCLVEKLNGKLLSKVRAIREAANLPACLWGEILHYVVHVD FT NRSVTKALTNMTPYEKLWSRKPDMKDLKVCGCVAYHHLPKEKQQNKLEMRA FT KPAIFLGMAESTLGYRLLDLQTGDILQRRSVRFHEDVAVGGDYVEKLLGQR FT YYGKNTAAPLEISYVRLPVKRVAVIDNMPQAIEPSVVNVDPQAIEPSVVHV FT DEEAKRPVSIDDDVSMSSSDESDWECVETIEADGGACCATNAPNQNVNLEA FT QIVQPGGSVIVDGGHAATAPRRSGRQRRSSNRYNPNMWVMSMTLMQCMLIG FT VVNDILNPTTRKEALASEYAEDWRHAMDLEHEALMKNETWDLVPRPKQRKG FT RRRANILTSVWVLVVKRNEKGEVDRLKARLAIRGFLQKFGIDYLATYSPVV FT RIESVRLVMLMAMLLGLECKHVDFVTAFLNGELVDVVIYMEQPEGYEDGTD FT RVCRLRKGLYGLKQASKIWNDTLHKVLVKLGFVQCTFDAGVYWRRCQGHVM FT FLTVYVDDIIIAGIPNDIEEVILQLADWFKLKDLGRVRHLLGMEVNYMPGR FT MVCLSQTAYIERLADKFGLQSARSVRSPQFHHEKPTKIETELTKINDPALP FT YKEIVGSLQYLVACTRPDLAHVVRNLGRYMSAYSIENYRAAQRVVRYALAT FT KNMGLVYRVNSESVVMDAFCDADHQSCPETSRSVTGYLLRLHGNTWMWKSH FT GQRRVTEDTCSSELVACCECTKMVVWARELVLELGFSGQELQVPIHCDNQS FT AIAVVACNGNTSRVRHMAKHARFINEYIQAKELDLVYVQSAENLADIFTKA FT LGPAEFERQRSRLNVEDVPSTWAKVAASAREHAVVKDVEMEEA" XX SQ Sequence 4727 BP; 1383 A; 881 C; 1294 G; 1169 T; 0 other; ctctcgtagg ttctgagccc aaagcgtggt attaagtatt ttggtgcagt tgtggcgagg 60 ctttgtgctt gtggtaagga caaagaagtt gttcaacacc agcaccgggc acatccaaca 120 tgtcgacgag ctcaggtggc cagcaacaac cagcagttgg tcaacagcag aatcaacagc 180 aacagaacgc gcaacaacaa ggagctaatg gtggagccag aacgaggcgc gtgtgtggct 240 cgaagccacc gaagtacacg gaagctggag gtttcgacct ctatcatgcc caaatcgagg 300 gatatcttgc tcagcacgga tgttggcagg ttgtaagtgg caacgcagta gacgatccaa 360 atgaccctca atggatagag aggaaccaat ttgcgcgttg tgccttatta tttggcatgc 420 ttcctaaaga ttcgaagaag gtgtgcagaa tggcaactgc tcgagaaatg tggacatctt 480 ttgagcaaga taaaacgaag cgagcatacg caagtgaaat tcgccttcgg cgagatttgt 540 atgctgcgaa attcactcct ggtgatgaca tggaaaaata tctcgagcga ctcgacgatt 600 tgagacgtca attagccaac atgaatgctg aagttaccga caacgaaatg gttaatatcg 660 ttcttcaagg ggtagttgat tcgcatcgaa atgtagttcg aatgtttaat cgaaacaaca 720 atggtggtgt tgccccagac ttggctacag ttgtaaatgt tttgcttgga gaagctgaga 780 cggacagggc atgcgctgct aatgcaaata atcaagtgga gactgtgcca gtaacaaagg 840 tgatgtccca gcgacccgcc atacaaaaca cgaagaagcg ctttaacaag aaaggtggca 900 gtggcaagaa agtgacacaa gaaaatcgga agtgcttctt ttgtaagaag aaaggtcatc 960 tgcgagcaga ttgttatggc tggaaggcgc tgcagaagaa gaatggttcc agctccgacg 1020 acactgccga tcatgaaggc agagaagtaa cgtcaatgag aatggtttgg tctggagaac 1080 ttggcgatac tgacaatccg ccagtggcta tacgtatggc gtggccttca gacaaagttg 1140 gtttcgaagt agacccagta catgattgga tgctggatag tggtgcaggt gcacatgtat 1200 gtgtcaacgg agcttcattc agtaaattgg tcaaggatcc tttattaaca ctcgattggc 1260 aaggtggatt gaaaactaat gagctttctg ggccaattaa actggaaata ctcaatggga 1320 aagaagtgga tttgcctgga gttcgttatg cacctgaagg agtgactaat ttaattagtc 1380 agcgtctgtt agagcaatca ggatggagac catcatattc tgacacagac aacgagcgac 1440 tacgatgcaa atactttgac aaggacggaa ttcgtcttga attcaagaag aaagatgatg 1500 gattctactg gatgaaggcg agccctatag tatcagtagc aatgatggct gttcgacatg 1560 gtaaaacgtt ggaaaacagt gccgtcatga aatggcattt gaaactggca catctcaatg 1620 aaaaaaatgg tagtggataa acttaccgaa ggtatggaag gactgagtct gaatgatttc 1680 aaaaggacgc cactcaaatg cattgcatgc gatgctgcaa agatgaaaag aatgtccttc 1740 aagcgccaac aaggaaaacg gtctacagag tgtggtgcac gtttgatgtc cgacgtctgc 1800 tatgttggaa ttacaacacc tggaggagca aagtattttc aattggtgca ggatgaggct 1860 tctcgtttca aatgggtctt cctgcttcag aagaagagtg aggccgcaga aaatgttatg 1920 aatttgattc gtcaacttga gaaagacttc aaagttaaga tgttctcgtg tgaccaagga 1980 ggtgaatttt taaatcgagc gttgactacc ttctttcgtg aacaaggaat aaaactgttg 2040 acgacaaatg cttacacccc ggaggagaac tgtttggtgg aaaagctcaa tggtaaactt 2100 ctcagcaaag ttcgagcgat aagggaagca gcgaatttac cagcgtgttt atggggtgaa 2160 atattgcact atgtggtgca cgtggacaac agaagcgtga ctaaagccct gacgaatatg 2220 acaccgtacg agaagttgtg gagccgtaaa ccagatatga aagacttgaa ggtatgtgga 2280 tgtgtagcat atcatcattt gccaaaggag aaacagcaga acaagttgga aatgcgagcc 2340 aaacctgcaa tttttcttgg tatggccgag tcaacattag gatatcgact tttggacctc 2400 cagacaggag acattctcca gcgcagatcg gttcgatttc atgaggatgt agctgtggga 2460 ggagattatg tggaaaagtt acttggtcag cgatactatg gtaaaaacac agctgcacct 2520 cttgaaattt cctacgtccg gcttcctgtc aaacgtgtag cagtgataga taacatgcca 2580 caggcaattg agccatcagt ggttaatgtt gacccacagg caattgagcc atcagtggtt 2640 catgttgacg aagaagcgaa acgtcctgtg tctattgatg acgatgtaag catgagtagc 2700 agtgacgaaa gtgattggga gtgcgttgag acgattgaag ctgatggcgg agcatgttgt 2760 gccactaatg ctccaaacca aaatgtgaac ttggaagcac agattgttca acctggtggg 2820 agtgtgatag ttgacggtgg acatgctgct acagctccgc gtagatctgg caggcaacgc 2880 cgatcgagca atagatataa tcccaatatg tgggtgatgt caatgacgct gatgcagtgc 2940 atgctgattg gagtcgtcaa tgatattctg aaccccacaa cgcgaaaaga agctctagcg 3000 tcagagtatg ccgaggactg gcgccatgca atggatttgg agcatgaagc gttgatgaag 3060 aacgagactt gggatctagt gccacgaccg aaacaaagga aaggtcgacg tcgggcgaac 3120 atactaacat cggtgtgggt cttggtggtg aaaagaaacg agaagggaga agttgacaga 3180 ctgaaggcaa ggcttgctat acgaggtttt cttcagaagt ttggaattga ttatctcgct 3240 acttactctc ctgttgtcag aattgagtcg gttcgtctgg tcatgctgat ggctatgcta 3300 ctgggtttgg agtgcaagca tgtcgatttt gtgacagcct ttctaaatgg tgaactggtt 3360 gatgtagtaa tttacatgga gcaaccggaa ggatacgaag atggaacgga ccgtgtatgc 3420 agactacgca aaggtcttta tggattgaaa caagcgtcga agatatggaa tgatacacta 3480 cacaaagtct tagtgaaact tggtttcgta cagtgtacgt ttgatgcagg agtgtattgg 3540 agacgatgtc aaggacatgt gatgttcctt acagtgtacg ttgatgatat cataattgct 3600 gggattccaa atgacattga agaagtcatt ttgcagcttg cagattggtt taagctgaaa 3660 gatttgggtc gagtgcgaca ccttcttgga atggaagtaa actacatgcc tggacgaatg 3720 gtttgccttt cccagacggc gtacattgag cggttagcag ataagtttgg cctgcaatca 3780 gcaagatcag ttcgttcacc acagtttcat catgaaaagc ctactaagat cgagacggaa 3840 ttgaccaaga tcaacgaccc agcattgccc tacaaagaga tcgtgggatc actacagtat 3900 cttgttgctt gtacaagacc tgatttggcc catgtagtga ggaatttggg ccgatatatg 3960 agtgcctaca gcattgagaa ctatcgagcg gcacagcgag tagtgcgcta cgcattggct 4020 acaaagaata tgggattggt gtatcgagtg aattctgagt ctgttgtgat ggatgcattt 4080 tgtgatgcgg accaccagtc gtgtccggaa acgagtagat ctgtgacagg ataccttcta 4140 cgtctacacg gcaacacgtg gatgtggaaa agtcatggtc aacgacgtgt gacggaggac 4200 acatgcagtt ctgaattggt tgcatgttgc gagtgtacta agatggttgt atgggcaaga 4260 gaacttgtgc tggaactggg ttttagtggt caagagctac aagtaccgat tcactgcgac 4320 aaccaaagtg ctatcgctgt agtggcatgc aacggcaaca cgtcgagagt gagacatatg 4380 gcaaagcatg cacgtttcat caatgagtat attcaagcaa aggaattgga tttggtgtac 4440 gtgcagagtg ctgaaaatct agctgacatt tttactaagg cgctaggtcc tgcagaattt 4500 gagcgtcagc gaagtcggct caatgtggaa gacgtaccta gtacttgggc taaggttgcg 4560 gcctctgctc gagagcacgc agtcgtgaaa gacgtcgaaa tggaagaagc ctgacaagca 4620 tgatcgcagc tattccggac ggttttgttg tgctagtgca cgttgcatat ttgtatactg 4680 gatagtatcg aatctggtat gaggtgggag tacgagacat caatagc 4727 // ID PiggyBac-3_PI repbase; DNA; PLN; 8877 BP. XX AC . XX DT 18-MAY-2011 (Rel. 16.05, Created) DT 18-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; Nonautonomous; KW piggyBac-3_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX CC incomplete on the right end. XX SQ Sequence 8877 BP; 2363 A; 1979 C; 2215 G; 2320 T; 0 other; ccctttcgtc acccccattc atttctatat taagccttac atactttaat caagttaaac 60 tttcaaaacc gtacatcatg tagggtttta gtatatcaat tgcgaagggg tttgcgagct 120 tattaatcgc atttgagagg gtttaatcaa aacagtacat aatgtatggt tcagattgct 180 gcaatatgat ttgctgaaaa taattgacgg cactgatgat tcgtcgaaaa cacacgaaaa 240 tcttccttct atcccaacat tggcacaagg tgcagtaccg tgaatgacag ccttgccaca 300 gtggaagaag gtggcgatgc tccatggagg cagagtggat ctcggaggtc caatttggac 360 ctcacttctg aaaagctgcg agcgagagga gttaggaact gagcgcagag atggctgagc 420 gggcttcaaa gcgtcagcgc aggtctcaag ccagcaacac accacagctt tctcgaggtg 480 tggcacttgt atagtcacta gactatagac tacgggtagc aggtgataac atgtttgttt 540 tttattttat gcaacagata attctgtgaa tttcaaggac gtttggaaag tgttacgccg 600 tgtgggatgg tcctataaac cctcgtcgag tagaagtttg gatttgcgct atcgctacgt 660 tcgtcctgga ggcaacccaa atggaataaa tggtcaagac tatttcttgg gggaagaagc 720 acttgttggg tacttcaaca gtgcgtatgc agatgaagca ccttacgtga aaactggtaa 780 ctcggtcgga gtattgcata gtgctaatgt aggtacgaag agcagtgcga ttgatgagct 840 tgatgcccta caagttggtg ctacagctgg aaatgttgct tcaatacctg agcaaggaga 900 tataagtttg gatacttgtg acaaggacga cgacagacgc actagacagc tagatggtaa 960 tcctgtggct cacacgatac caaaagctac tattggtgtc gtggatgaac aaatatgtgt 1020 tcatacgtct actgtcgatg aacctcagca atcacgtaca aagtctactg tttcgactcc 1080 aatatgtcca gtttgtgaat caccgtgctc gacccagcgg tcgtgcacga cgtgtggagc 1140 atttatgcat catttttgct ctcatgatgt ttgtgcagca cttgagctgt acgacccgga 1200 cggacagcag atactggatt ttggagacgc ttcgttctgc agtaagcagt gctatcgaga 1260 aaaagcagca ccggtcgtga tgaacatgag tgggcaaaac caggggggta caactgggtt 1320 ggtttcggga gtaactacgt cgagtgttgc tacatcgcac agtgatatcc acctccaagg 1380 acaatcacag tcggaaggag tactaatacg aacgagtgaa gccaagtcaa acccgccacc 1440 tctactacca gttaaacgca agccgaaatc agcaactcgt aagacagacc aaccacgaac 1500 agcaactgaa gagaacgcaa aatcacgagt tagcagtact cgaaagaact caaaatcagc 1560 tgaacgctcg caatcgaaag gaaaacaaaa aatttcaaac gcaaatgcta ctgcatttcg 1620 taaagaactc gcaatacggg cggaagctac cgcaaacaga tacgttggag ccagtgtggc 1680 gttttcgcca gctgaggaaa cctggatgga gcgcaaatat tatagcgatg tcggctcaac 1740 ttatctgatt ggcgtagtga ctcgtcacat ccttgaaaat aaaaaaaatg gtgatggtgt 1800 ggctgtgcca accttgtcgt ttgaagtacg atggacaaat accgcttttc aaacaaaaca 1860 tcacgttcat cagatcgaag aagatgtcgt atgtcgcggc gtaaaacact acgtggctat 1920 acatcagaac agtgctgaat ttggtgaatc ttggagtgcg ctttgcagta tggtgccaaa 1980 gtatacgaac atacctcaac ttacagatga atttgacgaa gtacaagaaa gtgaatatcg 2040 tgagtggtcg gtctttcgaa gccagaaaga gcttcaaatt gatttgtgtc cagcagaagt 2100 cgagcttatc caaggtatga cattctcacc tacggcttcg cttgacgaag taccaggcct 2160 gtttgctcac cccgatgggt ctacaaccac aaaattacgc gaagaaagta aacatctttt 2220 tggaaaaagt gcaagctcga gtttctttgc gtttatccct atttcgtttt ggaaacaagt 2280 ggtgactttt tcaaacggtc gtgctgcaga aacctctggt caacttggag cacctattga 2340 actggaagaa ttgatgatat ttcttgggat tcagtggtac atgacacttg tcgacaaggg 2400 cgagatgcga aattattggt ttgacaatga agactcaaat atttttcctg gacaatcgtc 2460 gacaagtttg gctactgtta tgagctggaa aaggtatcta tacattagaa aaaatttatc 2520 gtttcgccct cgtacaagtg ctgaggagct gtcgagtgat cctgcagcaa gtatacgtcc 2580 tctgataaca attttgaaaa taagatgctg ccgtcacgtt attccggggc gagatgtggc 2640 tgtggacgaa gcgagtattg cgagtaaatc aaagtacgcc aggcacatca tcgtctataa 2700 tccacgcaag ccgactggaa aatatcactt caaattgtat gtctgctgct gttcgacgac 2760 atggattgtc cttgatttca aacttcactg ctccagtgac ctgaaaaatc gcctagcaaa 2820 tgtaatttct cctgcggaaa tagatcgtct tgcggcgttg acagaaaagt cttcagagat 2880 tcggaaacat gtcattgaag tcacaaattc gctaagaggt tcgaggcggg tggtaaacac 2940 tgataacttc tacacatcgt gtttattgct ggaaagcctg agaacggttg gtctttacgg 3000 gcgaggcacc gtccgttctt ccagtaaaca cttcccgcgt tatacgatgg ttgggtcgac 3060 cgatactaag agaggcacca tgaagcaagg ggtgtgcgtg gaaaaacaca tcgtggcggc 3120 tagttgggtg gatggatcgg tagtcaatgt catttcaaat gctgatgact cgggtaccac 3180 aactgtatat cgacggattc gacaacagcg ggagcccttt aaagccccaa aatgcgtcag 3240 tgaatacaac accgcgatgc aaggagtaga tcgtcacgac caactacggg gtagattttc 3300 tgtggccaat ggtcacacgt ttaagaagtg gtataaaaag ctggctatgg cgatgattga 3360 catcgcgcga tgtaatgctt acatatgcca tcaaatggct cgccgtagca atcactcggg 3420 attcagtgat ggcgaagata gtccggaatc gagtcgtcga gacgagcacc gtgcatttgt 3480 cgcaagcctt gttcgcgaaa tgttcgatgg aacgtggaaa gagtctctta gtgacgatga 3540 tgggatgcta tttgccaata gcaacgatgg acctacttct tctctttgtc atgctgctaa 3600 cactgctgtt tcgagtggta ccaatgacgt atgcgtggca cgggagtcat ggatagcact 3660 aaaagatcga agtcgagcga tgcgtgagtg tactgtgtgt cgctttgaat gcagaaatcc 3720 aactcaaaag acagactact gcgaaaagca caaagttgct ttgtgcaaac gcacctaccc 3780 aatcgataaa tccaagccac atctttgtca agaagcgtca tggtcatgct ggcagaagta 3840 ccatggatat tatctgccta atctggtcta caatctcgaa ggtcatctca tgcgaagctc 3900 ttcgatatac aaaatgcagg cacctttcct ccgatcaaat gcaagcaaga ggactacgcg 3960 ttaggctcac gtggctcacg tgaccgctgg tcactagttc cggtgtcgca tcggtacagc 4020 aatttgatta tatgaaaaaa aatgagaagt ggatttatag atacttggtt ggtgcagatt 4080 tttgtaagca aaactaccca cactacactg caagcttgag gacaaaccac gcttcggtag 4140 ctctcaacgt gaagatatta ttgcgtcaaa tgtccatatg gccggttgcg agtcatcgtg 4200 aactgcattt tctcccagac catcggcgag gtgcaagtgg ctgctggtgg gacgaatttg 4260 cattagtcaa ggtggccaac gactagcaaa gaggctacat cctctcgcac tgttccgtgc 4320 ctgccgacaa gatgaattgg cgtttgacga gcagcgtgtg tagcaatcgc tgcaggtcca 4380 acacaatgga catcagtcgg aaattcgcag tctaatcacc agccacaccg tgtacaaacc 4440 gtcgtagtag ctaccgcgca tgattgttgt tgccgctgac gcttcgtgtt cacatcggtt 4500 agggaatgca gcggccagtg tagcaacggt atcgctccaa acgggcagca tgtatgactg 4560 acgttcggcg cccatgtagc gttagcatcg tacagcgtgc ggaccggcgt ggcgacagcg 4620 acttgtcggc gttagcatct tatgtgtgga ccagcgtgac gacagcatgg gaatcgagca 4680 gcatttccac cagagatttc ggtggtgtca ggcagcgtgc aatggtagtg acatcggtca 4740 gtgtcaggcg gcgggtgggt tagcagagat gggtgggggc agtcggtatg aacccgagtg 4800 ttcacaagaa aggaaattgc ggaatgagac tcgttggggc ttggcgcgcg ctcgacgccc 4860 ccgcacgcga gtttgaatcg ttgaccctcc aaagcggctt gtttcgcgcc aaaacattgc 4920 gagcttcaat gttgaagtca cgttttcgcc gatgtcctcg gtttgaccaa tcaaatagca 4980 ttccgatgat tctagcagtc tgattggcta gcaaagtgat ctttaatata cgcgtatggc 5040 tacctatttc gattatgggt agtacctatt tttgctatga ggaccaatta ccttgcagta 5100 gttatacccg acagcgtatg ctcctttgtc gggtccgttt tgacgtagaa aagcgtacct 5160 gaggaaatgt aagccagtag ttctgtggct gtgcgcttca agaccacatc ctcaaaaaag 5220 gtaatcctaa ctttgatcct ggaggtagta gttagatctc taccacagca tgtcgttcgc 5280 caatttgtgt agtattatgc tcttgtgttt ttgaaatgac atctccagtt aactttttag 5340 gtacgttttg gttggaattg gccattgcta ttttttcgta caatgatctt tcgaacggtc 5400 tgattggtcg gaatcacgtt cggcactgtt taatttccaa aaaaaatgcg ttatgcagag 5460 tatcgtgaac gcataaaaag acgccaagga cagtaaacaa cgccacgtgg tgcaggcatc 5520 atcagctaca agacacaagc gtttgctggt ggcgcagcaa cacacatggt gcgccgttgt 5580 cgtcatcatg acgtccccct tggtgtcgat catcaacctg tcgatgaccg ccatctcggg 5640 gccggactgg gcaaggaata cgagtgtggc ggcggctcct ctgatatcgc cgccacactc 5700 gtattcttcg cccagttcga aatcatcgcc tcttccacga tgcgtgcacc gctatgtggt 5760 cgccgaggcg cacgtcggta gtcgctgtag gaggcaagtg tgcgacccga ttttggaagg 5820 caggccctca cattcgtagt gctgagcgtt gattcctcag ttgcagaagt caagtagcaa 5880 gtaggtaccc tgtatggcga agtggaaatg caccggcgtt gtgggaacaa tctgagtaga 5940 gcggtgatct gtgtggtgct gtgttaccac gcgctctggt atagtaaata tcgttttgag 6000 tgttgaaact attgtcctgt gtgctgctct ggatcgatca tacgacaatt tgactatcat 6060 actctgccct catgtcactg tatatgaacc aaattgttta tttttattat tattcgagcc 6120 acagctcgta caggttgcct ttgcctcatt cagtttaggt atttacgcaa ataataccgt 6180 tcttcctcat cccatttctc tagccgatgg tagggttcgc ttggaggtag cacatcatat 6240 gtcaaaccga caggttgctc ttgctcccac aatggcgatc gatagtaggc acacttgctg 6300 cacgtgcatg gctctcgtat atccatatat tcgaactgat ccgcgagaat gtcaatttcg 6360 ctcatcgcaa tccataagtt attaacttcg ctgaatgcgt tctccaagat tttaccttca 6420 ttccaagctc gagctctctg ttcggtgctt cgaacgtctg ctagctggat gtcgacttca 6480 attttgacat caagcatctc tgcttttttg acaagaaatg ttttcagata ttgcagtcgg 6540 tcacgtatca tttcggtagt tatctaaacg ttgtagtaac gaaaaggtgt tagtaccatc 6600 ataacatata cgaatttaag actggtcttt cgtacctctg aaagctccat acacagctgc 6660 agccagcgta ccatccatac aaagtgatgt ctgtcgtagc cgctgtatgg atcctcggaa 6720 tagttgatgt tcataacgta catttccttt accggcaaca tctcaataaa gtcatcaacg 6780 tctttggttg agtggaatac attctcaaaa acctgcaatt aaaaaacgtt tgcatgttag 6840 cagttgtatc catgacaccc tcagtttgaa tgttgacgca gtactcgatc ttttgctggt 6900 ataaacacgg gaagcaacga gtcaaagttg agtctgcggt ggcagctgaa atgaacaagc 6960 gcgtctttta taacgatcgg tttgtaaatc tgctctccat tggacgctgc aactcctgca 7020 gtgaaaggta gctgcaagac gtgtatgtca gtaagaaaac tagattcgct attagcacca 7080 cactagttac ctctgccttg tcgaggcgcc aatccattca gtgaattcca agttgctagt 7140 gccaagtaga tagctgtttt ggaaatgaaa aatgccagaa tgagagaaca tcatcacctg 7200 agtctcctaa ccgcaagttg cagttcagag acacttcgtg gtgcagtctg cagcaaggaa 7260 ggaagttcgt atcaagtagc ttctttacgt tgcagttgga accagcaaat actaagagta 7320 gtacaatcgt acctgcctag tattagatat gcaggtacac cactgcaagt ggtatggatt 7380 cgaaaaagtg tgtgtttggt gagaatctag aaaacaaaca aacttggagc tgtacttatc 7440 gaaaggtcgc tcaaaacaat ctagaagagt atgacgtgaa agagcgagct agtaagttaa 7500 aaatgaagtt catctagaat cagcatgtaa tggccggtaa ccctcatctt gaacatcttt 7560 gcgtggatca aacagactac gtcaagaatg ttggcaactg cgtgcagtgg caatgaacgt 7620 ttaagcttca atgatgcagc tgtcaccact tccacgcgcg gggagaggga gcagaaccaa 7680 aggcagcgtt cacgaccgac atgtagtagc agtgacaata cggtcactag cagccgcgtc 7740 gcgatggatt ccacgcaaca gttgtagcag ctgttgagtc ggagatagcg gcgtcgtcgt 7800 catgtctccc agtttgctgt cgatcaccaa gctgtcgatg gctgtcgtct ccggcccttt 7860 ggtagcaagc acctcgctgc tgtgtctcct ccgatatcgt cgccacactc gttttcatcg 7920 cactggtagc agtactcgcc tcctccgcat atgcacgcac caccactacg tgatcgttta 7980 ccagtaaact agcaaatcat cgcacaagat tgttgttgcc gtagccgttt cgcgttcaca 8040 tcggttacgg aatgcagcga ccagtgtagc aacggtatcg ctccaaacgg gcagcatgta 8100 tgactgacgt tcggcgccca tgtagcgtta gcatcgtaca gcgtgcggac cggcgtggcg 8160 acagcgactt gtcggcgtta gcatcttatg tgtggaccag cgtgacgaca gcatgggaat 8220 cgagcagcat ttccaccaga gatttcggtg gtgtcaggca gcgtgcaatg gtagtgacat 8280 cggtcagtgt caggcggcgg gtgggttagc agagatgggt gggggcagtc ggtatgaacc 8340 cgagtgttca caagaaagga aattgcggaa tgagactcgt tggggcttgg cgcgcgctcg 8400 acgcccccgc acgcgagttt gaatcgttga ccctccaaag cggcttgttt cgcgccaaaa 8460 cattgcgagc ttcaatgttg aagtcacgtt ttcgccggtg tcctcggttt gaccaatcaa 8520 atagcattcc gatgattcca gcagtctgat tggctagcaa agtgatcttt aatatacgcg 8580 tatggctacc tatttcgatt atgggtagta cctatttttg ctatgaggac caattacctt 8640 gcagtagtta tacccgacag catatgctcc tttgtcggat ccgttttgac gtagaaaagc 8700 gtacctgagg aaatgtaagc cagtagttct gtggctgtgc gcttcaagac cacatcctca 8760 aaaaaggtaa tcctaacttt gatcctggcg gtagtagtta gatctctacc acagcatgtc 8820 gttcgccaat ttgtgtagta ttatgctctg ggttttacaa tgacatcaga aatagtt 8877 // ID Gypsy-10_PPa-LTR repbase; DNA; PLN; 359 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PPa-I; KW Gypsy-10_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-359 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 970-970 (2010). XX DR [1] (Consensus) XX SQ Sequence 359 BP; 89 A; 70 C; 82 G; 118 T; 0 other; tgtcaaggac atacactagg aagttgtaga agattctaga aggttctaga gaagctttgt 60 agtttgtaga agctacttga gaagttttca agctcgtgga agctgcttga gaagcttcct 120 aactcgtaga agctgcttga gaagcttcct agtttgtgga agctacttga gaagcttcct 180 agcttgtagt atatatagga gccgagactg aggggatcct cagtctcgac aacacacctc 240 ttggagctct agctcacctc tctagtgttg ttcttgtact catctgatta atctagttct 300 tgccgattct tcttgagctt cttgtttaga tttccagtca gtattctaaa ttcgtgaca 359 // ID Copia-29_PIT-LTR repbase; DNA; PLN; 168 BP. XX AC AATU01000844; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-29_PIT_; KW Copia-29_PIT-I; Copia-29_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-168 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000844; Positions 19169 19002. XX SQ Sequence 168 BP; 43 A; 41 C; 37 G; 47 T; 0 other; tggatttcag cgtgcacaag ccgaacaagc atctctagat ggtgactgta gcgtcgtagt 60 ttaggaggct tttagtccag accaacatcg ccttggttgg tcatggtttt ccctcaccac 120 agagtgcttt ctaacgctag cactattcaa tctaccttga aaagaaca 168 // ID Gypsy12-I_VC repbase; DNA; PLN; 6740 BP. XX AC scaffold_9; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy12-VC; KW Gypsy12-LTR_VC; Gypsy12-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6740 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 121-121 (2008). XX DR Genome; scaffold_9; Positions 24692 31431. XX CC Positions [5117-5611] - Integrase core CC 'TGATT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 1894..3939 FT /product="Gypsy12-I_VC_1p" FT /translation="MVPPVDNASTIVARYLDAKTANPKTSAIIVLPDRPQA FT SWAPLIRHMTIVRRFPAGAQIVCRPTSSDPSRYGEPGPSPWPVVVLHDPPS FT SAPFTLASTSATLLPDTTLHPVSTSSHPSFASANHLSTSSTSSVKTLIQHF FT SSSHPPPPPQPSDRPPPPRSNVANLIARFSQTPTSAASSPPPPTPTVSQPA FT QPSFPLVQRPTPQPHRALQASLPQIDEQRSTVERPFIPPILGRIASVTDNL FT STTLIVFDATIAGHPARVLLDSGASRNFIAHSFLQHHQLHPANLPASQSFR FT VCLANGHLALCSSALPNTPLAIQSHHERTTFFTLDLDGYDAILGKPWLTTN FT NPQIDWRTNTVTIGDTVIPHSSYCPSAFQIEFVSIARMQKCICQAAARPPP FT PNTTNPCKRAPFNPSPPVYMGVLRPIEDPEVDPEAPPQPTASPSVPPALQP FT VLQRYATIFEEPSGLPPSRPCDHHIELVPDAQPPKQREYRMSPAELQELDK FT QLKNYLDCGWIRPSTSPFGAPILFARKPGGNGLRLCVDFRAINQLTVKNAY FT PLPRVDELLDQLHGAAYFTKLDLWSGYHQVRVHEPDVHKTAFRCKYGLYEW FT LVLPFGLTGAPATFMSSAPSATSVRLCTSTTSSSTPAPLKTIAATWKPFYA FT PFKTTTSMSAFPSALSRNPPPSSADSSSPATAS" FT CDS 3684..5183 FT /product="Gypsy12-I_VC_3p" FT /translation="MACSSLRTYRSPRHLHVLRPFRNKCAVVYLDDVLIYS FT RTFEDHCRDMEAVLRTLQDHHLHVRFSKCSFAQPSTKFCGFIVSRDGIMTD FT PDKLTALANFPIPSSITNVRAFLGFTGFYRRFIKDYARIALPLTTLTKTTQ FT PFPKVLPADAVAAFQALRDALMSAPALIIPDTGTNATFTLYTDASILGIGA FT VLLQERNSALHPVAFESRKLSRHEANYPIHELELLAVVHAVRKFRCYLEGC FT HFTLCTDHDTLQRFFTQKDLSRRQARWAQLLAPFQGYITITYRPGPQNMAD FT TLSRFPVSPAPNPEPSDPTPSLPPTSAENLTSMTSPSPSPLWPSTSPPVDV FT AANHALHHACFTIAAHVVPDPSLADDIRFGYTADPMYSNSTSTKPYLQRSP FT DGFFYFANHIAIPNVPSLRRRLLHEFHDAAYSGHPGFRCTLAAISTRYWLT FT WPAPSKPMSSPAPSVNAPSHPPSLRLASSTRYPLPRNPGHTCLWTSSPTCR FT PLKV" FT CDS 5018..6325 FT /product="Gypsy12-I_VC_2p" FT /translation="MARTVKAYVKSCPICQRTKPSTQPPPGLLHPLPTPTQ FT PWTHVSLDFITDLPPSKGLDGRTYTAILTFVDMFTKQAHFALTNKTTTAHD FT TALLFLTHIYRLHGLPTTLVSDRDSRFMSDVWRTFWEHLGTSLNISSAYHP FT QTDGQTERTHRTIEQILRAYIQPMQDNWASYLPIAEAAYNNATHASTGMTP FT FYANHGYHPRTPISLHGPQAASPSSHPQATELQQRMSDIHATINREIQAAK FT TRYAAAANQHRRAITFKVGDRVRLSTEHLTLPTYPSPKLRPRYLGPFLISS FT VISPVAYRLHLPASLGRLHPVFHISRLLPWTDNDPALFPGRPPPPPAAPTA FT LESPYDSADTVVTAVRLGYNKRARPSVMFLVQWSASSKRDPSWEPYDDVHN FT LPALRAFLRSPSWTACRLSDRYAWFRAKFPEHAPRIVQFLAE" XX SQ Sequence 6740 BP; 1321 A; 2653 C; 1305 G; 1461 T; 0 other; attggtatca gagcctaggt gatccttctc gccgagctct tcatcgtcgt cgccatcgtc 60 ttcgtcgtca tcgcgccatc gcgccatcgc gccatcgtct tcgcctctac acttcgtctt 120 cgccttcatc acttcgtctt cgtcttcgcc ctcatcactt cgccttcgcc ttcgccctga 180 tcacttcgtc atcaccctga tcacttcgtc atcgccctcg tcacttcatc ttcgtcctct 240 ccacctcttc aacaaccatg tctctctcga acgagttccc atttccgcct tcctttcctg 300 ccgccaccga ccccgcgccc gcgcccgcgc ccgcgcccgc gcccgcgccc gcgcccgcgc 360 ccgtggcgcc ccccaccacg tccgaagccg ctcttccctg ggatagaatc tcagaagtag 420 ccgcccatgc cgccatacga gcctcagaga atcgttcatc aaacaaccag cgcggaccag 480 ctccccgctt caaccctacg gccaaggatg ctgacctcgc ttcatgggcc aaccgcctac 540 gtctccactt tacggtatgc ggtttacatg aagacagtgc gcctgctgtc gccatcaccc 600 tttctgccat tgaaggacct accctcgaca ccctcctcct ccgccaccaa cgtaccccct 660 tcacttcctt aactgcggtc cttcaagcgc taacacccct cgcgcccaga cccgatcgcc 720 tcctccaggc acagatcagc atggacacca ttcgtcaagg ctcaggcctg aactcgctgg 780 tgtcgtacat ggccgctttc ggacgcctca tgggcgacct tcctcaccgt cacgaactcg 840 accacgtctt tcacttcgtg aaaggtctca acagggacct ccgtgaggaa gtctacacaa 900 ggcttcctca atacggcact gatgtgaccc tgcaaatcat catcgacttg gcgatgggca 960 tcttttccgg gcgccacaac gcccatctca tcgactagaa caccgcgcca tgcagctccc 1020 gagacgtccg ccgggacgac cctatggacc tcaccgccaa cgtctactcc accacgccgc 1080 accacagcaa ctcacctctt ccgagtggcg tcaaaaccat cggagtcccc tacaacttgc 1140 gcctccagcg catggcccag cacgtctgcc tacagtgtgg tgacgagtcg cacgccaagg 1200 aacactgccc ggaacttcgt cgcctcctgg caacatccac catctcccaa cccaactcct 1260 cccgccagca ctcctttcag ggtgctaaca acagccgcaa gccgccctgc tcgcctgccc 1320 gctcgcctgc ccgctcgcct gcccgctcgc cctcccgctc ctccgcgtcc tccacctccg 1380 aggatcgatg ttcacgcagc caccaccaat acgacaacca cagccatcgc ggtcgttctc 1440 cctcccgcct cagtaacagc tcccacggcc gccgctccca gcacatcagt gacaaatccc 1500 ctacccgctc ccgctcccca ggcccccgtt aaatcggctc ttaggccgtc gtcggcagaa 1560 acggtcagcc acagcctgcc gacgtcgtct gctgtgcact cgtccgaaac cgcgttcaac 1620 gttcaacgtc tagctcaaat cgtccgcaag cctgcccgcc gtgttggtcg caagcgtgct 1680 cgcgcagctg cagcctcgac atcgaaggga gcatgccagg caagcaacga ttggaaaatc 1740 gcgtgatcgc tttttcttga atacgattca cagtacggcc cgtttaccgt cgatgcctac 1800 tgtgatgacc tcggcttaac tgcacagctc tcgccctttt tctcaccgtc ccgacctttc 1860 ctatcgaccg acatcgaagg agagtgcgta tggatggtgc cacctgtcga caacgcctcc 1920 accatcgtcg cccgctacct cgacgccaag accgccaacc ccaaaacctc tgccatcatt 1980 gtcctacccg atcgtccaca agcctcttgg gcccctctca tccgccacat gaccatcgtc 2040 cgccgcttcc ctgccggcgc ccagatcgtc tgccgcccca cctcttctga cccgtccagg 2100 tatggagaac cgggtcccag cccttggcct gtagtagtcc tccacgatcc accatcgtca 2160 gcccccttta ctctcgcgtc tacatccgcc accctgcttc ccgataccac ccttcatccc 2220 gtctccacct cgtcccatcc ctcattcgct tccgccaacc atctgtcaac atcatccacg 2280 tcgtcagtca aaactctcat ccaacatttt tccagctcac atcccccacc gccgccccag 2340 ccatcggacc gtcctccacc accacgctct aatgtcgcta atcttatcgc tcgtttttcg 2400 caaactccaa catccgctgc ctcttcccca cctccgccta caccaaccgt cagccagcca 2460 gcccaaccat ctttccccct cgtacagcgt cctacccccc agccccaccg cgctcttcaa 2520 gcttcgcttc cgcagataga cgaacaaagg tctacggtgg aacgcccctt catcccgcct 2580 atcctaggtc gcattgcgtc cgtcaccgac aatctctcca ccacccttat cgtcttcgat 2640 gccaccatag ctggccaccc cgcccgagtc ctcctggatt ctggtgcttc ccgcaacttc 2700 atcgcccact ccttcctcca acatcaccaa ttacaccccg ccaaccttcc agcttcgcag 2760 tcgtttcgcg tttgtttggc caacggacac ctcgccctct gttcctccgc ccttcccaac 2820 acccccttgg ctatccaatc acaccatgag cgcaccacct tcttcaccct cgaccttgat 2880 ggatacgacg ccatccttgg gaaaccctgg cttactacca acaaccccca aatcgactgg 2940 cgtaccaaca ccgtcaccat cggcgacacc gtcattccac attcctcgta ttgcccatcc 3000 gcttttcaga ttgaattcgt ctccatcgcc cgcatgcaga aatgcatttg ccaagctgcc 3060 gcccgaccgc caccacccaa caccaccaac ccttgcaagc gagctccatt caacccatca 3120 ccacctgttt acatgggtgt cctccgtccc atcgaagatc ccgaagtcga ccctgaagcc 3180 ccccctcaac ccaccgcctc cccgtccgta ccaccagccc ttcagcctgt cctccagcgc 3240 tacgcgacca tcttcgaaga accatcgggt ctaccaccat cacgcccatg cgaccaccac 3300 atcgagttgg tccctgacgc ccagcctcct aagcagcgcg agtatcgcat gtccccagca 3360 gaacttcaag aactggacaa gcagctcaag aactaccttg actgtggctg gattcgcccg 3420 tcaacgtcac cctttggtgc ccctattctg ttcgcccgta aacctggtgg taacggtcta 3480 cgcctctgtg tggactttcg tgcaatcaac cagctaacag tcaagaatgc gtatcccctg 3540 ccgcgcgtgg acgagctcct tgaccagctg cacggtgcag cctatttcac caagctggac 3600 ctctggtcag gctaccatca agtccgtgtg cacgaacccg atgtgcataa aacggctttt 3660 cggtgtaagt atggtctgta cgaatggctt gttcttccct tcggacttac aggagccccc 3720 gccaccttca tgtcctccgc cccttccgca acaagtgtgc ggttgtgtac ctcgacgacg 3780 tcctcatcta ctcccgcacc tttgaagacc attgccgcga catggaagcc gttctacgca 3840 cccttcaaga ccaccacctc catgtccgct tttccaagtg ctctttcgcg caaccctcca 3900 ccaagttctg cggattcatc gtctcccgcg acggcatcat gacagaccct gacaagctca 3960 ccgcccttgc caatttcccc attccttcct ccatcaccaa cgttcgcgcc ttcctaggct 4020 tcactgggtt ctaccgccgc ttcatcaaag actacgcccg catcgccctt cctcttacca 4080 ccctcaccaa aacaacccag ccctttccca aggtcctacc cgccgacgcc gtcgccgcct 4140 tccaggccct ccgcgacgcc ctaatgtcag ccccagctct catcatccca gacaccggca 4200 ccaacgccac cttcaccctt tataccgacg cctccatcct cggcatcggc gctgtgctcc 4260 ttcaagaacg caacagcgcc ctacatcccg tggcattcga gtcccgcaag ctcagccgtc 4320 acgaagccaa ctaccccatt cacgagctgg agttgcttgc tgtcgtacat gcagtgcgta 4380 agttccggtg ctatctcgaa ggctgccact ttacgctctg cacagaccac gacaccttgc 4440 aacgcttttt cacccaaaag gacctgtctc gtcgtcaagc ccgttgggct cagctcctcg 4500 ccccatttca aggctacatc acaatcactt accgccccgg ccctcaaaac atggccgaca 4560 ccctttcccg cttcccggtc agcccagccc ccaatccaga gccctctgac ccaactccct 4620 cacttccccc tacatcagca gaaaacctaa cctccatgac atctccatca ccttccccgc 4680 tttggccctc cacttcacca cccgtcgacg tcgcagccaa ccatgccctt catcatgcct 4740 gtttcaccat cgcagcccat gtcgtgccag accccagcct cgcagatgac atccgtttcg 4800 gatacaccgc cgaccccatg tactccaatt caacatccac caagccttac ctccaacgtt 4860 ccccagacgg tttcttctac ttcgccaacc acatcgccat ccctaatgtc ccatctttac 4920 gccgccgcct acttcacgaa ttccatgatg ctgcttactc tggtcatcct ggtttccgtt 4980 gcaccctcgc cgcgatatca acccgctact ggcttacatg gcccgcaccg tcaaagccta 5040 tgtcaagtcc tgccccatct gtcaacgcac caagccatcc acccagcctc cgcctggcct 5100 cctccacccg ctacccactc ccacgcaacc ctggacacac gtgtctctgg acttcatcac 5160 cgacctgccg ccctctaaag gtttagacgg ccgcacctac accgcaatcc tcaccttcgt 5220 cgatatgttc accaagcaag cccactttgc cctcactaac aagaccacca ccgctcacga 5280 caccgcccta ctcttcctca cccacatcta ccgtctacac ggtcttccaa caaccctcgt 5340 ctcagaccga gattcccgct tcatgtccga cgtctggcgc accttctggg agcaccttgg 5400 cacgtcccta aacatctcct ccgcctatca cccacaaact gacggtcaaa ccgagagaac 5460 acatcgcact attgaacaga tcctccgcgc ttacattcaa cctatgcagg acaactgggc 5520 atcatacctt ccgatcgccg aagcagcata caacaacgcc acccacgcaa gcaccggcat 5580 gacaccattc tacgccaatc acggttacca cccgcgcact cccatctccc tccacggccc 5640 ccaagccgct tcaccttcct ctcacccgca ggctacagaa ctgcagcagc gtatgagcga 5700 catccatgcc accatcaacc gcgaaatcca agccgccaaa acccgctatg ctgccgcagc 5760 taaccagcat cgccgcgcca tcaccttcaa agttggcgat cgcgtccgac tgtctacaga 5820 acacctcacc ctgccgacct acccctcccc aaaactccgc cctcgctacc tcggcccttt 5880 cctcatctcc tccgtcattt ctccagttgc ataccgcctt caccttccag cctccctcgg 5940 ccgcttgcat ccagtattcc acatcagccg cctccttcca tggacggaca acgacccagc 6000 actcttcccc ggccgcccac cacctccccc tgcagcccct actgcactag aatccccata 6060 tgacagtgca gatactgttg ttacagctgt tcgcctaggg tataacaagc gcgcacgccc 6120 gtccgtcatg ttcctcgtgc agtggtccgc tagtagtaaa cgcgacccct catgggaacc 6180 atacgacgac gtgcacaacc tgccagcgct tcgtgccttc ctgaggagcc caagctggac 6240 cgcgtgcagg ctatcagatc gctatgcgtg gttcagagcc aagttcccgg agcatgcccc 6300 aaggatcgta cagtttttgg cagagtagag ctgcggctgg atgtgtgtgt gtgtgtcatc 6360 atgtgtattc ggtatatctg tgcgtcttcg ttctgttcct gtccgtagat tacaccagtc 6420 agttcaacgt agtgtggtat tgcatttcac gtgtgtgttc gcgtctgggt atttgggttc 6480 cgtgtagtca gatttaagtc gttttcgtag cagcttttgc gtatctccgg attcttaagc 6540 cggatatggt aggagtcgtg cgccacattt taggccggta tccagtgcgg ggaaggtttt 6600 gccttgactc cggttccctt ttgccttccc ctcgttagcc tggtaccgat ttcgttcagg 6660 gaatcggaga ggcgcacgac tatggccgct tagtgacgtt ttcgcaccga ggacggtgct 6720 tgtttttaag gaggggagtg 6740 // ID Copia-28_PIT-I repbase; DNA; PLN; 5079 BP. XX AC AATU01002203; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-28_PIT_; KW Copia-28_PIT-LTR; Copia-28_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5079 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002203; Positions 38752 33674. XX CC Positions [1785-2303] - Integrase core CC 'CGGAC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 6..5030 FT /product="Copia-28_PIT-I_1p" FT /translation="MSPSGGSAGMSKPMKYTSEGVPKNWQGKDWQTYKWAM FT MNVFKEDDLKDIADGALTKDMLSTASAEDQEKFNKKQIKIMRMIGTSVPPE FT ILQQIRDKETGSEMWAELCNLFEGKQNEAIKAYTIRRLENDLWDKKLASGG FT DANLHLCKMFSIKSELVGLQHTIEDSTMVDMLLESLPDLTEFECLKSSIRY FT GADPSVYTPVRVRELILAAAARQKEFRGKRQGKQGGHKSGGDKSGDPEKGG FT NSNQQNKSSKQRKARLCFVCGSDSHIKAKCPEREEKNSGAGDRETKRKPQG FT NLTISQENKSGAGSNSEPKRKPQGNLTLSQEGNGLSQILHEPADQGIVTGL FT ITAEAHHEHETLHETLYDAQGTGVDEKLLEVNDQVPVDENFSGWWYFDTAS FT NSHVVGDRSYFVSYTEDASQLRSIRGISPNIAARIAGMGTVALTTEVNGEQ FT TVMCLDDVFYIPGAEFGLFSPGLAHEQGFDFTFNHDTQDFTILWEGKSVAV FT AKPQEATWGFLGLHPGQTSVKEPVNRRPMVNFTIAEGVGTLALWHERMCHT FT CPQYLKTMVDRGLVRGMMLTQRHQQICDACHVGKQKKKAHRKKMDRATKWP FT NQVVYADLLIPSKDNRTRYEAVLVVMDGYSRFVRVFLLTSKESSVVNKHLQ FT QYILWAERQAGRNVNGTVYKVKQVLTDKGGEFINKGMENWYARRGIEHIRV FT GPKSSQLNLCERTHQSLVDMMKTTMVHAGFPRSLWPEALRNAVYVKNRVYN FT RGTQGIPYEMIFGMKPDVHHIRKFGSLAYVHVPVTSGRRKHDNNAKIGFLL FT GYEEDVVGCKVYFPDEHTARFVSDLRVAEDVVYKDRHEGAVDEEDLESLHF FT TRRDDQDVDYDNRLNHEMATSKTMELVSEPNSELSIGLVGGEMDVAANSEH FT EKGVQMADAVSNALNSRPDEIESTRELGRADLHESDGHGGVSLTDAASSAC FT NLTTSIPRSEIKASSSGNLCVGGKQSESSTQNDGADVGSVVGTRGSSLDGN FT EVDDDDEAGLPTDDDITVASVFSFDEKTISMENNNSSSGVGLEEDPESTDE FT HQSAVVDNNNAQKMDASVCLDPVVIRETGKRTHRDETQSEEARVEHEAAKP FT DTKRTRTGLREIQERRQPRRFDDFVMNAATSRVLDEHGRPIRACEVKIPRN FT RREALRSRFANYWMEAEMVEIAALKAKKVIQEIPNEDMPEDAKPVSTMWVY FT ALKSDHQGYVIRFKARIVALGNHQRPGIDFKETFAPVARMASFRLLLGLAA FT LLGLEVYGGDVNTAYLNAWLGIRQYLHSINGYPCRVSGHSYVVLKALYGLR FT QSGREWNSELNDWFIQRGYQRSLTEPCLYYLFDGGTMVYVLVYVDDILVAT FT NSKEYKDQLFMDLDNTYGLKDQGLLTQYLGVEVTHTSEYIMISQGKYAREI FT LGKLGFENAHAVGNPMEVNSRLTPLGEKESADGSFPYREAIGMLMYLATST FT RPDLAYSLGQLSRFVANPSAKHIGTVKRVLRYLAGTLDYGIKYEKKKNNSK FT ELVLQVYCDSDWANDPDQRKSTTGFVFMLAGGAVAWMSRRQSVIALSTAEA FT EYIAACEATMEAVAGKNVLQEMLPLHDVKLRVGIDSQAAHVMATNPTYSRR FT TRHIELRWHYVREQVQKGTVELHKVRGETNPADTFTKPLDKKRLKGLLLIA FT GIGAEK" XX SQ Sequence 5079 BP; 1477 A; 998 C; 1458 G; 1146 T; 0 other; gggttatgag cccaagtggt ggcagcgcag gcatgagtaa gccgatgaag tacaccagcg 60 aaggggtgcc gaagaattgg caaggcaagg attggcagac atacaaatgg gccatgatga 120 acgttttcaa ggaggatgac ttgaaggaca ttgctgatgg agctttaacc aaggacatgc 180 tctccacagc gagtgcagag gaccaggaga agttcaataa gaagcaaatc aagatcatgc 240 ggatgattgg tacgtctgtt ccgccggaaa ttcttcagca gattcgcgac aaggagaccg 300 gatcggaaat gtgggcagag ctctgtaatc tgtttgaagg aaagcagaat gaagctatca 360 aggcctacac gattcgtcgc ttggagaatg atctctggga taagaagctc gcttctggag 420 gagatgcaaa tctccatctt tgcaagatgt tcagcatcaa atcggagttg gtaggcttac 480 agcatactat tgaagacagt acaatggtgg atatgttgtt ggaaagtttg ccagatttga 540 ccgagtttga atgtctgaaa tcttcgatcc gctatggcgc ggacccaagt gtgtatacac 600 cggtacgggt tcgtgaatta attcttgcag ccgctgctcg acagaaggaa ttcagaggca 660 agcgtcaagg aaagcaagga gggcataaaa gcggaggtga taaaagtggt gatccggaaa 720 aaggcggaaa tagtaatcag cagaacaagt caagtaaaca gcgaaaagcc aggctgtgct 780 ttgtctgcgg gagtgatagc catattaagg ccaagtgtcc ggagcgtgaa gagaagaaca 840 gcggtgctgg agacagagag accaagcgaa aaccgcaggg aaacttgacg atcagtcaag 900 aaaacaagag tggtgctggg agtaacagtg aacccaagcg gaaaccacaa ggaaatctga 960 cactcagcca agaaggaaat ggactgtcac agatactgca tgaacctgca gatcagggga 1020 tagtgacggg attgataacg gctgaggctc atcatgagca cgagactctg cacgagactc 1080 tgtacgatgc tcagggaaca ggagtagatg agaagcttct agaagttaat gatcaagtac 1140 ctgtcgatga aaactttagc ggttggtggt attttgacac agcttcgaac tctcacgtgg 1200 tcggagatcg ctcgtatttt gtgagctaca ctgaggacgc gtcacaacta cgcagcattc 1260 gaggtatttc cccaaacatt gcagctcgta tcgctgggat ggggactgtt gccttaacta 1320 ctgaggtgaa tggagagcag acagtaatgt gtctggatga tgttttctac atacccggag 1380 ctgaattcgg gctcttctct cccggacttg ctcatgaaca agggtttgac tttacgttca 1440 atcatgatac tcaggacttt actattcttt gggaagggaa atcagtagca gtagcgaagc 1500 ctcaggaagc aacttggggg tttctgggac tacatccagg tcaaacaagc gtgaaagagc 1560 ctgttaatcg gcgtccaatg gtaaatttta ctatagccga aggggttggc actttggcgt 1620 tgtggcacga gcgtatgtgt catacttgtc cacaatatct gaagacgatg gtagaccggg 1680 gattagtgag aggcatgatg ttgactcagc gtcaccagca gatctgtgac gcatgtcatg 1740 tggggaagca aaagaagaag gctcatcgca agaagatgga cagggcaaca aagtggccga 1800 atcaagttgt gtacgctgac cttctcattc caagtaaaga taatcggact cggtatgaag 1860 ccgtactagt ggttatggat ggatactcca gattcgtgag agtgtttctg ttgactagta 1920 aagagagttc agttgtaaac aagcacttgc aacagtacat actctgggcc gagcgtcaag 1980 caggacgaaa tgtgaacggg actgtctaca aagtgaagca agtactgaca gacaaaggtg 2040 gggagttcat caacaaaggt atggaaaact ggtacgcacg gagaggaatt gagcacatcc 2100 gagtgggtcc aaaaagttct caattgaact tgtgcgaacg aacgcatcag tcattggtgg 2160 acatgatgaa aaccacgatg gtacatgcag gctttcctcg gagtctatgg ccggaagcac 2220 tacgaaatgc tgtatacgtc aagaataggg tatacaaccg tggcactcaa ggaattcctt 2280 atgagatgat atttggaatg aaacctgacg tgcatcacat taggaagttt ggatctctag 2340 catatgttca tgttcctgtg acgtctggaa gacgcaagca tgataacaac gccaagattg 2400 gctttctact cggttacgaa gaggacgtgg taggctgcaa agtttacttt cctgatgagc 2460 acaccgccag gtttgtatct gatctacggg ttgctgaaga tgtagtttac aaagaccgtc 2520 acgaaggtgc tgtagatgag gaggacctcg agtcactgca ctttacccga cgtgatgacc 2580 aggatgtgga ctatgacaac cgtttgaacc acgaaatggc tacatccaag acaatggagc 2640 tggttagcga gccaaattct gagttgtcta ttggactcgt gggaggcgag atggatgtag 2700 cggctaacag tgagcacgag aagggcgttc agatggcaga tgctgtctca aatgctctaa 2760 atagtcgacc agatgagatt gaaagcacga gagagctcgg tagagcggat ctacacgaga 2820 gtgatggcca tggcggagta tcactcactg atgcagcttc gagcgcatgt aatcttacta 2880 ctagcattcc aaggagcgag attaaggcaa gtagctcagg aaatctctgt gttggtggca 2940 agcagtcgga atcatctacg caaaatgatg gtgctgacgt tgggtctgtg gtgggaacac 3000 ggggctcatc gctggatggt aatgaggtgg atgatgacga cgaagcagga ttaccgacag 3060 acgacgacat tactgtagca agtgtgttct catttgatga gaagactatc tcaatggaga 3120 ataacaactc gtcgagtggt gtggggcttg aagaagaccc agagagtact gatgaacatc 3180 aaagtgcggt tgtggacaat aataacgcgc agaagatgga cgctagtgtt tgtcttgatc 3240 cagttgtcat tcgagaaact ggaaagcgta cccaccgcga tgaaactcag tcggaagagg 3300 ctcgtgtgga acacgaggcc gcaaagccag ataccaagag aactcgaaca ggacttcgag 3360 agatacaaga aagacgtcaa cctcgacgct ttgatgactt tgtgatgaat gcagcgactt 3420 cacgggttct ggatgagcat ggccggccta ttcgtgcttg tgaggtgaag attcctcgta 3480 acagacgtga ggcactgcga tccaggtttg ctaactattg gatggaagca gaaatggtag 3540 agatcgctgc actgaaggca aagaaggtca tccaagaaat accgaatgag gacatgcccg 3600 aagatgcgaa gcctgtaagt acaatgtggg tctatgcctt gaagtcggat catcagggtt 3660 acgtgataag attcaaggct cggatagtgg cgttggggaa tcaccagcga ccaggcattg 3720 acttcaagga aacgtttgcc cctgtggcaa gaatggcttc gtttagactg ttgttgggac 3780 tggcggcatt actgggatta gaggtatacg gaggagacgt gaataccgct tacctcaatg 3840 catggctagg catacgacaa tatctacact ccatcaacgg atatccgtgc agagtgagtg 3900 gccattctta cgtggtactc aaggctttgt atggattaag acaatcgggt cgagaatgga 3960 attcagaact aaatgattgg ttcattcagc gtggatacca aagatcgttg acggagccgt 4020 gcctgtacta cctgtttgat ggtggcacga tggtatacgt gctagtatac gtcgatgata 4080 tcttggttgc aacaaacagc aaggagtaca aagatcagtt gttcatggac ttggacaaca 4140 cgtacggtct caaggaccaa gggctgttaa cacagtactt aggtgtggaa gtgactcaca 4200 cgtcagagta cattatgatc agtcaaggca agtacgcaag agagattctt ggcaagctgg 4260 gatttgaaaa tgcacatgca gtaggaaatc caatggaagt gaattcacgg ctcacacctc 4320 ttggagagaa ggagagtgca gacggcagct ttccgtaccg tgaagccatt ggtatgctca 4380 tgtacctggc tacaagtacc agaccggact tggcttattc attaggccaa ctgagtcgct 4440 tcgtagcgaa cccatcggcg aagcatattg gaacggtaaa gagagtgctg cgctacttgg 4500 ccgggacctt ggattatgga attaagtacg agaaaaagaa gaacaactcg aaggagttgg 4560 tgttgcaggt ttactgtgac agtgattggg ctaatgaccc agatcaaagg aagagcacta 4620 ctggtttcgt gtttatgctg gcaggcggag ctgtagcatg gatgtcacga agacaatccg 4680 tcatcgcttt gtcgaccgcg gaggcggagt acattgcagc gtgtgaagcc acaatggagg 4740 cagttgctgg gaaaaatgtt ttgcaagaga tgttaccgct gcacgatgtg aaattgcgtg 4800 taggaattga cagtcaagct gctcacgtga tggcaactaa tcctacctac agcagacgta 4860 cgcgccacat tgaattacgg tggcattacg tacgagagca agtgcaaaaa ggcactgtgg 4920 agttgcataa ggtgaggggg gaaacaaacc ctgccgacac gttcaccaag cctctggaca 4980 agaagcgact gaaaggattg ttgctgattg caggcattgg agcagaaaag tagtcgaaga 5040 ccagtattcg acatcgaaga ccgatcttcg agaagggcg 5079 // ID SCTRANSP repbase; DNA; PLN; 1143 BP. XX AC M11280; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Yeast (S.cerevisiae) mitochondrial 21S rRNA gene, r1 intron DE encoding a putative transposase. XX KW DNA transposon; Transposable Element; SCTRANSP; gene conversion; KW transposase. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-1143 RA Jacquier A. and Dujon B.; RT "An intron-encoded protein is active in a gene conversion process RT that spreads an intron into a mitochondrial gene."; RL Cell 41(2), 383-394 (1985). XX DR GenBank; M11280; Positions 79 1221. XX SQ Sequence 1143 BP; 486 A; 104 C; 130 G; 423 T; 0 other; aatttacccc cttgtcccat tatattgaaa aatataatta ttcaattaat tatttaattg 60 aagtaaattg ggtgaattgc ttagatatcc atatagataa aaataatgga caataagcag 120 cgaagcttat aacaactttc atatatgtat atatacggtt ataagaacgt tcaacgacta 180 gatgatgagt ggagttaaca ataattcatc cacgagcgcc caatgtcgaa taaataaaat 240 attaaataaa tatcaaagga tatataaaga tttttaataa atcaaaaaat aaaataaaat 300 gaaaaatatt aaaaaaaatc aagtaataaa tttaggacct aattctaaat tattaaaaga 360 atataaatca caattaattg aattaaatat tgaacaattt gaagcaggta ttggtttaat 420 tttaggagat gcttatattc gtagtcgtga tgaaggtaaa ctatattgta tgcaatttga 480 gtgaaaaaat aaggcataca tggatcatgt atgtttatta tatgatcaat gagtattatc 540 acctcctcat aaaaaagaaa gagttaatca tttaggtaat ttagtaatta cctgaggagc 600 tcaaactttt aaacatcaag cttttaataa attagctaac ttatttattg taaataataa 660 aaaacttatt cctaataatt tagttgaaaa ttatttaaca cctataagtt tagcatattg 720 atttatagat gatggaggta aatgagatta taataaaaat tctcttaata aaagtattgt 780 attaaataca caaagtttta cttttgaaga agtagaatat ttagttaaag gtttaagaaa 840 taaatttcaa ttaaattgtt atgttaaaat taataaaaat aaaccaatta tttatattga 900 ttctataagt tatttaattt tttataattt aattaaacct tatttaattc ctcaaatgat 960 atataaatta cctaatacta tttcatccga aactttttta aaataatatt cttattttta 1020 ttttatgata tatttcataa atatttattt atattaaatt ttatttgata atgatatagt 1080 ctgaacaata tagtaatata ttgaagtaat tatttaaatg taattacgat aacaaaaaat 1140 ttg 1143 // ID Gypsy-56_PIT-I repbase; DNA; PLN; 4148 BP. XX AC AATU01004918; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-56_PIT_; KW Gypsy-56_PIT-LTR; Gypsy-56_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4148 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004918; Positions 51095 46948. XX CC Positions [3472-3846] - Integrase core CC 'GCTTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 1960..3468 FT /product="Gypsy-56_PIT-I_1p" FT /translation="MIRSVPRPVYVSAFDVPLSYYTRVLAGQNRDATAIVV FT AGIGKFVFNRLPMGVSTAPDEFQASMDALLGDLSYVRVYLDDILVISETFE FT QHMEHLEMVFTRLIDAGLTLHPKNQICADAVDYLGYRLSEAGIEPIPNKVR FT AITAIAPPRHRRDLRRFTDMASYYRDMIPKRAALFSPLTALLSPSKPFRWT FT TELQTAFEAVKEALAGTVKLAFSESGKPFHVYTDASQLQLGAVIMQHDKPL FT VFWSKKCNGAQTLYPANRLELLSIVLLLREFRSLLLGQELHLFTDHLNLTY FT ATFHDVHMMRWRLEVMEFGPAFHYVPGQNNVVADALSRLPMNDDPPTELEE FT RDSDGTMQTCAAMDTDDDNLFSFDMHTVAQEQENDSNLENDCKCELGGVQL FT WVDRHSKKVLVPESLRNKLLTTYHEWLIHPGASTMKATINQVFTWAKLDRD FT VTKFVEACLPCSKAKHPTVRYGKLPVKKAIAWPWYEIAVDFIGPYGKQKFR FT ALTIIDK" XX SQ Sequence 4148 BP; 1137 A; 1016 C; 1099 G; 896 T; 0 other; ttttgctagc aaaaaaccga agcgtggcta catcgaccaa caagaagaac aaatctccgt 60 caccgacaac tcagcatgac ggacgatata acatttacca agaccaaggc aagtggtaca 120 gtggtgaaga aaaaggttcc tggcttccgc gacggagact ggaaagcgtg gctaacctgg 180 gtgctgaact tgcaagagta gcattcatgg tctacacact agatcaaggc gatcaatggg 240 caatggccga agatatccag gttttactgt ttgacgagaa cctgcgattc ttcaacgacg 300 tcttcaggga ggaagcagaa ttccgaccaa acatcaccct catggcactt agacagctaa 360 cggccataca ctgtcctcca ggaacgcgtg gtgtcctcat ggacgaactc atgcaactgc 420 ggaagaaaaa ggggacaaat gtgagagagt acagccgaga atttagaact ctgctgcgaa 480 tgtttccatt tttagagcac ggagaaaacg aagccgtgcc ggaagcagac atcgtcagga 540 tgtacaagtt gggcatgccg gtggactggc aagtcgaact gcaccgtgtg ttccgaggct 600 aggatctacg cagtatggag gcgcaatttg agctgattga gaggaacgaa cgtgacagcg 660 aagtcctgcg agggcaacgt caacgccaga tagatcagca acctcgacag cgtcaaaacg 720 agaggagccg caacaatcag cggcctcgca acaacaacca aggacggaac gacaagtact 780 gtagcttctg caagagaaac aatcataacg gcaacgagtg ctttcgtgac ccggcatctc 840 ctgcatatcg cccacgtaat tccggtggtg cacagtacca gcccaaccgt aatcaccaga 900 ccaaaacctt tggtggtggc aatcgaaatg cgtacaacaa taccaacaac tcatcgatga 960 cagcaatgca aggtcaaatt gcagagatgg ctgcaatgat gaagacgtta aaacaacgac 1020 aggatgacga gtatgcagca gttcagtttt atgacaattc attgcatgat acgatggctt 1080 ccagagttga aatggctaca gctccggtag attgtgaacc gcgtatggag attgaggtac 1140 aaattggttc tgtacgactg acagctcttc tcgacacggg atgtacgaac tcggcgctgg 1200 atcagaagac cctgagtgca ctccaaggag acgttgtctc gaacccgaga cagcgaagta 1260 caggaatgcg gacaactcga tcggccagac aactcaccgt gccacgtcga cgctgaagct 1320 gttggcattt tcaaacacga gaacgtgtac acattcgttt cgggtagcgg agacgctgct 1380 atatcccgtg atgctaggga aggacttcat gtggaagcaa aagatggtga tcgacttcga 1440 agatggcact ttgaagtggg atggaatcga gattaagatg gctacaggtc gtagcgtcca 1500 gaagcgggca gcagcagttc ttgctgcgga tatggagtgc agagcagaaa ttgcagttga 1560 tgaacccgaa gaagggcctc cgagtgatct gatagcaacg tagcgactga cagcagatca 1620 gatgacaacg atcgtgttgt taaccaggaa gttcccatcg ttattctctg ggaaattggg 1680 aacatttcgt aaggagccgt acattattcc tttaaagcct gatgctgagc cgtacgctgg 1740 caaacccttc ccgattcctc tggcgtactt tgaggcgacg agacaagaat cgatcgactc 1800 gttgcttttg gtgttctgac accgaattct tcttctgagt gggcttcgcc ggcgtttgtg 1860 atcccgaaga aggacggatc agtgagattg gtgtgtgatt ttcgccggct aaacaagcgt 1920 ttacgacgaa gtttctatcc ggtgcgttcg gtctctgaga tgattcgctc agtaccaagg 1980 ccagtgtatg tttcggcctt tgacgttcca ctcagctact acacaagggt gctagctggg 2040 caaaatcgtg atgcaactgc cattgtggtg gcgggcatag gaaaatttgt cttcaatcga 2100 ctaccgatgg gtgtttcgac ggcacctgac gaatttcaag cctcgatgga cgcgttgctt 2160 ggagatttaa gctacgtccg cgtttacttg gacgatattc tcgtgatctc ggaaacgttt 2220 gagcagcaca tggaacattt ggagatggtg tttacgcgtc tcattgacgc agggttgact 2280 ttgcacccga agaatcagat ttgtgcggat gcggtggact accttggtta ccgcctaagt 2340 gaggctggca ttgagccgat cccgaacaag gtgcgagcta tcacagcaat tgctccgcct 2400 cgccaccgtc gtgaccttcg acgatttact gacatggcga gctactatcg cgacatgatc 2460 cccaagcgag ccgcattgtt tagcccacta acagcgctac tatcgccatc aaaacctttt 2520 cgatggacga ccgagctaca aacggcattc gaggcagtga aggaggcact cgctggcaca 2580 gtgaagctgg cattttcaga gtctggaaaa ccttttcacg tctacacaga cgcttcacaa 2640 ctacagctcg gagccgtcat tatgcagcac gacaaaccgc tggtattctg gtcgaagaaa 2700 tgcaatggtg ctcagacgct ttacccagca aaccgactgg agttactgag catcgttctc 2760 ctgttgcgcg aatttcggag cctgcttctt ggccaagaac tacatctttt cacggatcac 2820 ttgaacttga cgtacgctac gtttcatgac gtacacatga tgcgttggcg gctagaagtt 2880 atggagttcg gcccggcgtt tcactacgta cctggtcaga ataatgtagt cgccgatgcg 2940 ctctcgcgtc tgccgatgaa tgatgatccc ccgaccgaac tggaggagag agatagtgat 3000 ggtactatgc agacatgcgc ggcaatggat accgacgacg acaacctgtt cagcttcgac 3060 atgcacacag tggcgcaaga gcaagagaat gactccaacc tggaaaacga ctgcaagtgt 3120 gagcttggtg gagtgcagct atgggtcgat cgacactcga agaaggtgct cgtacctgaa 3180 agcctccgca acaagctgct aacaacatat cacgagtggt tgatccatcc cggcgccagc 3240 accatgaagg caaccatcaa tcaagtcttt acttgggcaa agctggacag agacgtcacg 3300 aaatttgtcg aagcttgtct gccctgcagc aaggccaaac accccactgt tcgatacggc 3360 aaattaccgg ttaagaaggc gattgcttgg ccatggtacg aaatcgctgt ggattttatc 3420 gggccctacg gcaagcagaa attcagggca cttacgatta ttgacaaata aacgaggctg 3480 atagaaatcc tacctgcact tgacgggacc agcagcgagg ctgccttcct acttgaccgt 3540 cactggctga atcgttaccc ccgtcctgta aagtgtattt acgatggagg aagtgaattc 3600 aagaaggaat ttctcgagct tctcgatagc tacggcattg aacatgcccc taaaactgtg 3660 cgcaacccgc aggcaaatgc ggtgattgaa cgcgtacatc gcgtcattgg cgacaaaatg 3720 cgaaccaaga cgctgaaaac cgcagatgaa tgggagcaat tcctgaataa cacgaccttt 3780 gcactgcgtg cggcatacca ctccatgaca aatacgtcgc cagctcaaca ggccttcgga 3840 cgcaacatgt tctttgacat gaagcatgag acagactggg tcgaggagca ccgccggaaa 3900 gcagaccaga tcaagagaaa caacgaacgt gaaaatagca agagagtgaa ctggactata 3960 ctccaggaga caaggtttta ctccgtcgcg acgctggtgt ccaagggaag acactgccgc 4020 ttttcgacgg cccctacgag gtcctagccg tgcaagatac gggaacgttg acactcgaca 4080 agggtcgata catcgagaag gtcaacctac gtcgagttcg tccctgcaag aatcaacgtg 4140 gaggagac 4148 // ID Copia-2-LTR_FCy repbase; DNA; PLN; 803 BP. XX AC . XX DT 22-JAN-2010 (Rel. 15.04, Created) DT 22-JAN-2010 (Rel. 15.04, Last updated, Version 1) XX DE Long terminal repeat of a Copia-2_FCy LTR retrotransposon - DE consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_FCy; KW Copia-2-I_FCy; Copia-2-LTR_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-803 RA Kapitonov V.V. and Jurka J.; RT "Copia-2_FCy family of LTR retrotransposons from diatom."; RL Repbase Reports 10(4), 549-549 (2010). XX DR [1] (Consensus) XX CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX SQ Sequence 803 BP; 283 A; 132 C; 175 G; 213 T; 0 other; tgttaaatta tacatagtac tcgatgtagg agtcatatgt cgtacataag ccccgcggag 60 tagaaataca agcgcgatca gattagtgag gagaaatgca cgtgtatgca ttattgagat 120 aaaagagaac cgaaagttag ctaaaagcca acatcgtact gttggagttg aagtgacctt 180 gtcgaagccg ttgtcgaagc aattggaacc gagcgcaaat aagagaagtg cttaggtata 240 tttatacaaa tcggaacacg attaggaaga gtgtccgaat acatagaaca cgattatgaa 300 gagtgttata catatggaag tcgaacagat gtcgatgtcc acctttgaac cgctaatgcg 360 atatatatgc attgaggcga agtgagttag gaacagaaag ttgtatgcag ggttactgga 420 aaccgcaata ctaaaatacg aagaaaagag cagaattacc tcgattacga gaaatgaaca 480 attactgtct tttattgttg agaaattgta ataaccatag actaaataaa caagtgtgtt 540 aataacaact tttgcgtttg aacatcatcg ttagtatcgt acgacgttac tatagatata 600 tctacagaaa gttacgccat tcttctacgg aagtttcgct gacaagaagg ggttagatat 660 cctggtagaa caaccgtgag tagtctttca atataagggt caagagtatc aacccttcca 720 gctttaatag aatcttacaa gaccgaagag taagactatt ataatcctgt ttcaccaatc 780 atcgattgtc tgtgaaacgt aca 803 // ID RTEX-1_VC repbase; DNA; PLN; 5067 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.02, Created) DT 20-JAN-2010 (Rel. 15.02, Last updated, Version 1) XX DE RTEX family of non-LTR retrotransposons - a consensus sequence. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-1_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5067 RA Kapitonov V.V. and Jurka J.; RT "First examples of RTEX non-LTR retrotransposons found outside RT metazoans."; RL Repbase Reports 10(2), 139-139 (2010). XX DR [1] (Consensus) XX CC RTEX-1_VC belongs to the RTEX clade of non-LTR retrotransposons. CC The consensus sequence is less than 1% divergent from several CC copies of RTEX-1_VC. In addition to RTEX-1_VC, the volvox genome CC contains other families of RTEX non-LTR retrotransposons. The 3' CC terminus is made of the (ATCC)n microsatellite. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 24..1025 FT /product="RTEX-1_VC_1p" FT /note="ORF1." FT /translation="MRDASIRDEPKCPTLRMKKKGNKRTNSPRSEDCSIAK FT AQKSEIRTAARQGLGSAATEAMGDSPVTLESLMTFIKSEFERFNQNWQQQL FT PVKVEQLKGELKKELKEEIMGELQVDQTEKLFRPGRLLVRTKPSLVEQLPQ FT KLRQSLRARNQYAEIGVDISPRLDTRAAAPTLKLTEVGRFKGMAMVDVIFH FT ADSRGFVIQALLHLRRQLGANANNFIIQDSLTKRGLELKTQRTATFIWLRD FT TEKRDVRWVHGVDIAVKNNGTWQPYTGPWQPSHAPNGNGSATGANTTSIGG FT GTGASGSGGSGRAWRGSDRGREQGGPPGGAPPSPGGTTMDTA" FT CDS 1320..4823 FT /product="RTEX-1_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MNSVWLRIHGEALNFGGNGLVIGACYAAPLGSRAYTA FT NGRRPQDSVTRRVMDRVRSLVRRYQQPGDEVLLMGDLNSRVAEIRELPDVD FT GDAELADYVQAELGQANLLRSIPPRLSEDKTDNVFGRALATLCQEMEMVVL FT NGRVQGDLQGACTFWSPTGNGSSMIDLFVASPALFFKSNQLRVLDIPVALT FT GERVGSLMSDHCPVSLELGVLREGVNPTRRDKSTTRFEVQHKGRYESMFAA FT DDAPAVRRISDAVSKLGGELDSTAFVEVLTRACSSALERAFCKRCPAPKRV FT REEKDAPWWTQECAAARSDMLLQKAHMRAQGLLADEQARHIFTLLRSRYQR FT IRKEAMAAHRVSHFTSFLEECKGNPRALWRQLNQGATPDCPIRDVNSWRDY FT FDALYNDEINAFNEVRADYMMNLVNGCSLTIPRGWAGESCLARNQRVAAAA FT ALSAPFTLAEVIAALKMLGNNKSPGLERAPAECYKYATRKVGEKEEMVLAP FT YLLRLLEHIRSTGDYPRQFEISALTPIHKKGDVMDPKNYRGLAVGGALSKL FT YALLLDRRLKAWGERCGARSPYQGGFRPRRGTTQNLFLVRHLTDRCRKDFV FT NVPGQALFVCQIDFEKAFDRVNRELLWVRLEERGVTGSALDVIKRCYNRVE FT MRVQVDGAKGEAIPSTQGVKQGCPMSPTLFGFFVEGFADYIDALDVALPDA FT MAAHDTPSVEGRRVPLSLYADDLSLFAMSLRRLMSLLRALREWSEAFGLTV FT NVQKCELLFFHPNGQVRRQVYALSGYNLVTMRALEEGLPIFRPVTWKTRAR FT YLGLHFGPDSGFASCTDELFSAGQRAMFALRNKLRRQGLLLPSVGMKCFNA FT QVRSVLSYGSQVWGADQVLAMLEKGYPANEAPRSCYFDVAIRDRMVKLQIF FT FMKQLVGTSVPPLQLLFMELGQMPLQLHWAESVFRFWNSLVEDTSSVYHSA FT FRQEIRLALVTNLQFDGWGSKVIRILNHLEHDWGEEAVGGGIDMRVRRYSA FT CKLDVEALMDTLRTRVNDDWANDRLAVDPRVFVTDGRKPGVKMGRHKHWMG FT PPKPYAGYIPPAHHRALIRFRLCVSDLAVNSESNRAREHRVCAVCRSNGAI FT EDEKHFLVECPAIMSARQKIWDLGVPVNANIRDIMQVDDQRGLAKAIFEMF FT RSRHEHLTT" XX SQ Sequence 5067 BP; 1145 A; 1240 C; 1511 G; 1171 T; 0 other; ttttggcgtg ttcagctgaa gcgatgcgcg atgcaagtat acgtgacgaa ccgaaatgcc 60 ccacgcttcg tatgaaaaaa aagggcaaca aacgcacaaa tagccctaga agcgaggact 120 gcagtatagc gaaagcacag aagagcgaaa tacggacggc ggcgagacaa gggctcggat 180 cggcggccac ggaagccatg ggtgactcac cggtcaccct cgagtccctt atgactttta 240 taaagtcaga atttgaacgc ttcaaccaga actggcagca gcagctgccg gtgaaggtgg 300 agcagctaaa gggagagctc aagaaggagc tcaaagagga gatcatgggg gagctgcagg 360 tggaccaaac agagaagctt ttccgcccgg gtcggctctt ggtgcggaca aagccttcgc 420 tagttgagca actgccgcag aagttgaggc agtcactccg cgccagaaat cagtacgcgg 480 agataggggt tgacatctca ccgcggctgg acacccgggc ggctgcaccg accctaaagc 540 tgacggaggt gggccgcttc aagggcatgg ccatggtgga cgtcatcttc cacgcagaca 600 gccgggggtt tgtcatccaa gccctcctgc atctacggcg ccagctggga gccaacgcta 660 acaacttcat cattcaggac tcgctgacga agcgaggcct ggagctgaag acacagcgga 720 cagccacatt catttggcta cgcgacactg agaaacgcga cgtccgctgg gtacacggtg 780 ttgacatagc ggtgaagaac aacgggacat ggcagccata cactggaccg tggcagccaa 840 gccacgcacc gaacggcaac ggttcagcaa caggtgcaaa tacaacatcg atcggtggtg 900 ggactggagc gagtggaagt ggaggcagtg ggcgagcgtg gagaggcagc gaccgcgggc 960 gagagcaggg cggtcccccg ggaggggcac ccccctcccc ggggggtacg acaatggaca 1020 ccgcctagga agccaaccgg aggtatgaac cgcttcgtat agtccaatgg aatatacgtg 1080 gtgtgaccga ctggaaactg gaacagcgtg aactacttcg actcgccttg cgttacgaca 1140 ttgttgtact tactgaaacg cacgggtcac ttgtgggtag gctatctcgg ctgataccta 1200 atgggtcttg ctgctatctt gctgggaagt ctagagaacg ggggggtgtt tgcgtttggg 1260 tgcatcagcg gatcgcacgt catgttactc actgcacatc gacagacgcg ccaagaggca 1320 tgaacagtgt ctggctgaga attcacggtg aagccctgaa ttttggaggg aatggtttgg 1380 ttattggcgc ctgctacgct gcaccgctcg gatctcgggc ttacacagct aatggacgaa 1440 gaccacagga tagtgtaaca cgacgtgtca tggacagggt gcggtcgctg gtgagacgat 1500 atcagcaacc tggggacgag gttttgttga tgggggacct taactccagg gtagcggaga 1560 tccgtgaact gccagatgtt gatggggacg ctgagttagc ggattatgtt caggctgagc 1620 tggggcaagc caacctattg cgttctattc cgccacgcct ttcagaagac aaaactgata 1680 atgtgttcgg aagagccctg gctaccttgt gtcaggaaat ggagatggtt gttttgaacg 1740 ggcgggtcca gggagatttg caaggggcgt gtactttttg gagtccgacg gggaacggca 1800 gcagcatgat tgatctcttc gtagcatcac ccgccctttt cttcaagtcg aaccaattgc 1860 gcgtgctaga cattcctgtc gcactaaccg gcgagagagt tggtagcctc atgagtgacc 1920 actgcccagt gtcgctcgag ctgggggtgc tgcgcgaggg cgtcaaccca actagaaggg 1980 acaaatctac gacacgtttt gaggtccaac acaaaggccg gtacgagagc atgtttgctg 2040 ctgatgatgc ccccgctgtg cggcgcattt cagatgctgt tagcaaactt ggaggcgaac 2100 tcgacagcac cgcgtttgtt gaagtactca ctcgagcctg ttcatcagcg ttggagaggg 2160 ctttttgcaa acggtgccca gcacccaagc gtgtgaggga agaaaaggat gcgccctggt 2220 ggacccagga atgcgcagcg gcacgcagcg acatgttgct gcaaaaggca catatgaggg 2280 cgcagggact acttgctgat gagcaggcgc ggcatatctt tacactcctg cgctctcgct 2340 accagaggat taggaaggag gcaatggctg cccatcgtgt atcgcatttt acttcgtttc 2400 ttgaggagtg caaagggaat ccgcgtgcat tgtggcggca acttaaccag ggggcgacac 2460 ctgattgccc aatacgtgac gtcaacagct ggcgcgatta ttttgacgca ctatacaacg 2520 acgagatcaa cgcttttaat gaggttagag cggattacat gatgaacctc gtaaatgggt 2580 gctcacttac aataccgcgc ggctgggctg gtgagagctg cttagcccga aatcagagag 2640 tagctgctgc ggcggccctc agtgccccgt ttaccttggc agaggtcatt gctgcactaa 2700 aaatgctggg caacaataaa tccccaggac ttgaaagggc ccctgctgag tgctataagt 2760 atgccactag aaaggtgggc gaaaaggaag agatggtgct tgcaccgtat ttgctgcgtc 2820 tgttggaaca tatccggtcg actggggatt acccaaggca gttcgagata tccgccctca 2880 cacccatcca caagaagggc gacgtcatgg atccaaaaaa ctaccggggg cttgccgtcg 2940 gtggggcttt gtctaagctt tatgcgttat tgctcgaccg gaggctaaaa gcctgggggg 3000 aacgttgtgg tgcgcggagc ccttatcagg gtggctttcg accacggcgc ggcaccactc 3060 agaatttgtt cttggtgcga cacctcacag accgatgccg taaggatttt gttaacgtcc 3120 ccggacaagc gttgtttgtt tgccagattg attttgagaa agcttttgac cgggttaatc 3180 gagagctgct ctgggttaga cttgaggaac gaggagtcac gggctctgcg ttagatgtca 3240 tcaagcgctg ctacaatcgg gtggaaatgc gagtccaggt tgatggagca aaaggagagg 3300 cgattccctc cacccaaggg gtcaagcagg gttgccctat gagccccacg ctcttcggtt 3360 tttttgtcga aggttttgca gattacatcg atgccctaga cgtcgcactt cctgacgcca 3420 tggcggccca tgacacccct agcgttgaag gacgtcgagt gcccctatct ctctatgctg 3480 atgacttgag cctcttcgcg atgtcattga gacggttgat gagcttatta cgggcactgc 3540 gggagtggtc agaggctttc ggtctcactg tcaacgtgca aaagtgtgag ttattgtttt 3600 ttcaccccaa tggtcaggtt agaaggcagg tctatgctct cagcggatac aacctggtca 3660 ccatgcgcgc acttgaagag gggttaccga tcttccgtcc ggtcacttgg aaaacacgcg 3720 cccgttatct ggggctgcac ttcggaccag actcgggttt tgcgtcttgc acggatgagc 3780 tgttctcggc tggccaacgg gccatgtttg ctctgcgtaa caagctgcgc cggcagggtc 3840 tgctgctacc tagcgtcggc atgaagtgtt tcaatgcgca agttcgttct gtcttatcat 3900 acggctcgca ggtgtggggg gctgaccagg ttctcgcgat gttggaaaag ggctatccgg 3960 ctaacgaggc accgcggtca tgctatttcg atgtggctat acgagaccgc atggtcaagc 4020 tccaaatctt tttcatgaaa caattggtag ggacttctgt accacccctc cagcttctgt 4080 ttatggagct aggtcagatg ccgctacagc tgcactgggc tgaatccgta tttcgcttct 4140 ggaatagttt ggtggaggac actagtagcg tataccacag cgcctttcgt caggaaattc 4200 gtttggcgtt agtaacgaat ttacagtttg atggttgggg atccaaagtc attcgtatcc 4260 ttaaccactt agagcatgac tggggtgagg aggcagtcgg gggaggcatt gatatgaggg 4320 ttagacgtta ctcggcttgc aagcttgatg tcgaagcgct gatggacacc cttaggacac 4380 gtgtcaacga cgactgggcg aatgataggc tagctgtgga ccctagagtt ttcgttacgg 4440 acggtaggaa gcccggcgtg aagatgggcc gccataagca ctggatgggg ccaccgaagc 4500 cgtacgcggg ttatatcccc ccggcgcatc atcgtgccct aatccgcttt cgtttgtgtg 4560 tctctgacct ggcggttaac agtgagagca acagggctag ggagcaccgc gtgtgcgctg 4620 tgtgtcgtag taatggtgct attgaggatg agaaacactt cctggtagaa tgtccggcga 4680 ttatgtctgc gcgtcagaag atctgggacc tcggtgtgcc cgtcaatgcg aacatccgtg 4740 atatcatgca agtggatgat cagcgtggtc ttgcaaaggc tatttttgag atgtttcgct 4800 cccggcatga gcacctaact acctaacttt ctcggcggta ataggcaatt gtgtttcaga 4860 gtcaaattga cgctgttctt tctcataaac acccgttttc ttcttgcgta aaactttcct 4920 tttttgttgt ttgttttgtt tgcttcgttt actttttctc tttttttctt ttccctatcg 4980 acggcgctgt caaagcggtt catgagcctc cgggttcgtt tgggccgtac gagctcgctg 5040 aagcttgtaa catccatcca tccatcc 5067 // ID CRYPT1 repbase; DNA; PLN; 3563 BP. XX AC AF283502; XX DT 30-NOV-2000 (Rel. 5.1, Created) DT 30-NOV-2000 (Rel. 5.1, Last updated, Version 1) XX DE CRYPT1 is a HAT-like DNA transposon. XX KW hAT; DNA transposon; Transposable Element; CRYPT1; KW hAT superfamily; transposase. XX OS Cryphonectria parasitica OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Diaporthales; OC Cryphonectriaceae; Cryphonectria-Endothia complex; Cryphonectria. XX RN [1] RP 1-3563 RA Hillman I.B., Foglia R., Linder-Basso D. and Zhu P.; RT "An Activator-like transposon from the chestnut blight fungus, RT Cryphonectria parasitica."; RL Unpublished. XX RN [2] RP 1-3563 RA Hillman I.B., Foglia R., Linder-Basso D. and Zhu P.; RT "CRYPT1."; RL Direct Submission to Genbank (29-JUN-2000)Plant Pathology, RL Rutgers University, 59 Dudley Road, New Brunswick, NJ 08901, USA. XX DR GenBank; AF283502; Positions 1 3563. XX CC CDS 402..3239 CC /codon_start=1 CC /product="transposase" CC Transposase: CC MANSNAFNQLSHARYTSIQKQIDAHDATAQFSLGTLKDLPRIKVPGRSHAFVPARWMPTSSAKRKRHGSD CC IWHFGEKLFEVIVQADGTCKVAADWWFCRLCDQNNRQTLYTTRNSISTSTSAALKHLEGRDNEGHNLGKL CC KELVAEAEKEEVSPEELGRRKRRRINHRGLFNNSSLYTAPDALKDAANAPTRAVVSLAKKAITELVACCD CC IPLSTLEAPQFRQLLMVWNSTLTEHFFPRSDGTVMRWLFEAFHENLAGLQLQLQREAISKIHLSADLWTS CC PNHKGILAVVAHFVDSDAKLRNRLIAVRMINGQHTGENLQWHLHQVIMAFQLEERLGWLTFDNDSTNDKA CC TRLLFRKMYGFNHREAEKLRIERRCRCWGHIINLIVKGFLSGNAKQILEAEDSDADEVSRAVLYLPGLLL CC IFKQELEQQRNQWDQWQREGPIRRAHLIVVFLKASVQRVQDFEKIVQNSLFSPEDQDLEDTTAFLAEALP CC QPTAQDLTMPPPPLPTDPTDEQTGDISTLRPVVAQETRWNSTEAEISRLLRLKRPIDFWVKEQVRSGAKI CC QPLSEQDWRVLEATRDLLQPFLWHTKHHEGNAVAVHDVLSSLWDLEKHLRSFQERFGGRKTYAEEEILEE CC IIVSPNAEKPALQRPSSRYQAPSRPSSRPSPRPSPRPSSRLYSRPSSQRSSRPSPRPSPRSSPRRRASQS CC SDIFPSTPVREWPDVGSQQEAEIYPEECGLEGAEFLRESVAHALAILKRYKSKLRECPIYFAAAVLHPKY CC RLVGIRTAAPAIADDVEQEFKAFYEKYWAYKDPALSSASTPSLQEDQEHNKPKKQWRTAFRAQPRPKHQR CC PQSELEKYLQLEEDDEDDDGFEPLVWWAARKAEFPALSQMAFDVLSIPAMSSECERVFSQGKLTMSSQRR CC RMKSSTLELLLCLKDWLKNGTLAGPAAEMRRKGIA. XX SQ Sequence 3563 BP; 882 A; 934 C; 894 G; 853 T; 0 other; cagcgttcca cacaagtcaa gcggaatcaa gcggcttgac aagcgaagtt gacggtttgg 60 cgatggtctt caagacaagt aagcggcctt tttgaccaag cggcttgcaa gcgaacaagc 120 gaattgcctc agtcctattg tgggtcctta taggctcagt tgaagctatc gcggcccact 180 ctggatgcaa ccttgctggg gtttttggtg ttttggccta ggcttttgcc ctggcccttg 240 gctattcggc ctatatatcc gtattaagtc ttttcctccg ctggcaggca agctcttctg 300 tacctcttct acccttgtac ttggcatcct cgcgtttact tcctcgcgtc tcgcacctgg 360 gtgtcctcgc gtttatctat catcgctttc ctttcactat catggctaat agcaatgctt 420 tcaaccagct tagccacgcg agatatacct ctatccagaa gcagatcgat gcccacgatg 480 ccacagcaca gttctctctt ggtaccctca aagacctccc acgcattaag gttccaggac 540 gatcccatgc ctttgtccca gctcgctgga tgccaacatc atcggccaag aggaagcgcc 600 acgggtctga tatctggcat ttcggcgaga agctcttcga ggtcatcgta caggctgacg 660 gcacatgcaa agttgcagcg gattggtggt tctgtcgcct ctgcgatcaa aataatcgac 720 agaccttata taccacgcgt aacagtatct cgacaagcac atcagcagct ctaaagcatc 780 tcgaaggtcg cgataacgag ggccataacc ttggcaagct gaaagagctt gttgcagagg 840 cagagaaaga ggaggttagc ccagaggagc ttggccggcg aaagcggcga agaataaacc 900 atcgtggcct tttcaacaac agcagtctat atacagcgcc tgatgccttg aaagacgctg 960 ccaacgctcc aactcgtgca gttgttagtc tcgcgaagaa ggctataaca gagctggttg 1020 cttgttgcga tatacctctt tcaactctcg aggcgcctca gttccgccag ctgttgatgg 1080 tctggaatag caccctgacg gagcactttt tccctcgaag tgatggcaca gtgatgagat 1140 ggctgtttga ggcgtttcac gagaacctag ctggtcttca gctccagctc cagcgcgagg 1200 ctatctcgaa gattcatcta tctgctgatc tctggacctc gcctaaccac aaaggcattc 1260 tagcagtggt tgcgcatttt gttgatagcg atgcaaagct gcgaaatcgc cttatagcag 1320 tgaggatgat caacggccag catactggcg agaacctcca gtggcatctc catcaggtta 1380 ttatggcttt tcagcttgag gagcggctcg gctggcttac ttttgataac gacagcacga 1440 acgacaaggc aacaaggctt ctttttcgca agatgtacgg cttcaatcat cgtgaagctg 1500 agaagctgcg gattgaacgg cgatgccgct gctggggcca tattattaac cttattgtca 1560 aaggcttcct ctctggtaac gctaaacaga tactcgaggc tgaagacagc gatgctgatg 1620 aggtaagtcg agctgttttg tatcttcctg gcttattgct aatatttaag caggaactcg 1680 agcaacagag gaatcagtgg gatcagtggc agcgagaagg acctatacgc cgcgctcatc 1740 ttattgtagt cttcctcaag gcaagtgtac agcgggtcca ggacttcgag aagattgttc 1800 agaactcttt gttttctcca gaggaccaag atctcgagga cactacagcc tttttggcag 1860 aggcccttcc tcagccaaca gcacaagacc tcacgatgcc accaccaccg cttcctacag 1920 accctacaga tgagcaaact ggcgatatat ctaccttgcg gccagtggta gctcaggaga 1980 cgcgatggaa ctcaacagag gctgagatat cgcggctgct gaggctgaaa agacctattg 2040 atttctgggt taaagagcaa gttcgaagcg gtgctaaaat acaacctttg agtgagcagg 2100 actggcgagt gcttgaggca actcgagatc ttttgcagcc attcctatgg catacaaaac 2160 accacgaggg gaacgctgta gctgttcatg atgtcctcag ttctttgtgg gatctcgaga 2220 agcatttgcg gtcctttcag gagagatttg gaggcagaaa aacgtatgct gaagaagaaa 2280 tccttgagga gattattgtc tcgccaaatg cagagaaacc agccctccag cggccctcat 2340 cgcgatatca ggccccttca agaccttcct ctcggccctc gcctcgaccc tcccctcgac 2400 cctcctctcg actttactct cggccctcct ctcagcgttc ctctcggccc tcccctcgac 2460 cctcccctcg atcctcccct cgccgtcgag cttcacagtc ttcagatata tttcccagca 2520 ctccagtacg ggaatggcca gatgttggtt ctcaacaaga ggctgagata taccccgagg 2580 aatgtgggct tgaaggtgct gagtttctga gagaatcagt agcccacgcg ttggcaattc 2640 tcaagcgata taagagcaag cttcgcgaat gccctatata ttttgctgct gctgttttgc 2700 atccgaaata tcgcctggtt ggtattcgta cagcagcgcc agctattgct gacgatgttg 2760 aacaagagtt taaggctttt tacgagaaat attgggcata taaagatcca gccttatcat 2820 cagcatcaac acccagcttg caggaagatc aagaacataa caagccaaag aagcagtgga 2880 ggaccgcctt cagggcacaa ccaaggccaa agcatcaacg gccacagtca gagctggaga 2940 aatatctcca gctagaagag gacgacgagg acgacgatgg ttttgagccc ctcgtctggt 3000 gggcagcgcg taaggccgag tttccagccc tctcacagat ggccttcgac gtcctatcta 3060 tccccgcgat gtcgtccgaa tgcgagagag tcttcagcca agggaagctt acgatgtcct 3120 cgcagaggag gagaatgaag agcagcactc tcgagctcct tttgtgcctc aaggactggc 3180 tgaaaaatgg aacgctggca ggaccagcag cagagatgag gaggaaaggc attgcctagc 3240 agctttttgc caaaaaaagg cattcgaggg ggtcagaaat gtttctttca gcacttgagc 3300 gagggacctc gcgcggatca gagcgtaaca aggaaaacta tcatcatatg cctctgtacc 3360 ggttgaacca cgtgcgtagc tcatttgtta ctctcaccac ctttcgtttc gtatatctat 3420 cgtacattcc taatccggta tagtgaccaa gtcaccaagc gaatcaagcg gccaggtact 3480 agaagacaag caagcggcca aaatagttag caagtcaagt ggagggctac cgcttgcctt 3540 gacttgactt gtgtggaacg ctg 3563 // ID Copia-26_PIT-I repbase; DNA; PLN; 5136 BP. XX AC AATU01002204; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-26_PIT_; KW Copia-26_PIT-LTR; Copia-26_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5136 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002204; Positions 93742 98877. XX CC Positions [1745-2281] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 59..3100 FT /product="Copia-26_PIT-I_1p" FT /translation="MVDKIKFTSEGIPKDWNGKDWQAYKFAMQVVFRAMML FT TDVVEEKITRSMLFTSENEEEFDLKQTKIMRIIGMSVPSEILHQIRDRTTG FT TEMWAALSDLFENKANKTVKAHTIRRLRNELWSIKLAVGGNTTLHLSKMFN FT LKTELETLQYNVDDLDMVEALLVSLPDQPEFERMKSSILYAADASLFTPAK FT VRELIREAASRQNELVGKGGGGQRGGHKDGGNHGGGTAGKADNPRREKNND FT FVKKKPKKCYLCESTEHLKAACPERTDRKSGAGSNEKRKPRGNVTLRQENR FT SRPRPDQEDEDVGVVAGTLDRMMIDASVKTSVRVSEDELTDEVTQDNEGNS FT GRAGVNGDMSSGWRFFDTAANVHVTGNRTYFCAFTEDTSQSQSVHGLNTTL FT ASRIAGVGTVALVTEVDGESTVVYLNDVLYVPGAEFGLLSPGLAAEQGFDF FT DYDQSSSTFNVTYEGRTVIVATPNEATWGFFVRHPSTGGGVSLPNISLCNY FT TALDGVAPLSRWHERLGHICPQYLKTMADKSLVKGMMLTQRQGASTCDACH FT IGKQRKKTYQKKLDRGLKQPNQMIYADLLIPRKGNGTRFEAVLVLLDGYSR FT FVTVHMLTSKSSELVNKLLKDYIFWAERQSGRNSEEKEEGEQVKYRVRQVL FT TDKGGELINEAMQDWYRTQGIEHVLVGPKSSQLNLCERTHQSLIEMTKASM FT HHAGYPRSLWPEALRNAVYIKNRVYNKGTGGIPFEMMFGVKPDIHHIRTFG FT ALAYVHVPIQPGRRKHHDNTKIGFVLGYAEDVVGCKVYFPEDRTAKFVADL FT RLTEDVVYQDRHEASVDDADLESLHFEPSGEDSADMSVARTSCQSTRSLYS FT TDLDESVGLDPLELEEEKNENDGGVVQHELQNAEGDAKDTQMGCTSTHHEV FT GSGTHEVGSEETSQIIVKLNSGAATDVGGVSTAIPTEVGDVVDIEETLSAG FT EMETQRTNGHETSVVHSTIQFGLDTEDVGEDTAFAGDIESGIGNEQQSCLR FT KDNRIGGR" FT CDS 3593..4927 FT /product="Copia-26_PIT-I_2p" FT /translation="MSALRAKGVTMEIPYEDVPENAKPINTRWVRSVKTDR FT QGYVIRFKSRIGAFGNHQRPGIDFSETFAPVARMSSFRMVVALAAALHLVL FT YGGDINIAYLSAMLGIRQYLRSIDGFPCKEEHVYVVVKALYGLRQSGREWN FT TELNRWLMKHGYQRSLTEPCLYYKFRNDVIMLVLVYVDDIMVATNDEESKQ FT KLFEDLDDEHGIKDQDPLKEYLGIEVDQSNRGITVKQSKYANDVLETFGFN FT NAHAVSNPMETNMRLVPLDKDQQTDTSFDYRRAIGMMMYLATGTRPDLAFV FT IGQLSRFVAKPSAKHVGALKRVLRYIAGTVDYGITYGYSTEMPSTVVLNGY FT CDSDWANDPESRKSTTGFVDTLGGGAVSWMSRRQSIVALSTAEAEYVAAWE FT ATMEATAASNVLQELLQHQDVKLRLGIDNQAAHVLATNPTYSRRTRHIELR FT " XX SQ Sequence 5136 BP; 1499 A; 1036 C; 1473 G; 1128 T; 0 other; agagggttct gagcccaaga gaactgcgga ctatctgctg cacaagaagc gatccaagat 60 ggtggacaag ataaagttca cgtccgaagg aatacccaag gactggaacg gaaaggactg 120 gcaggcatac aagttcgcaa tgcaggtggt gttcagggcg atgatgctta ctgacgttgt 180 agaagagaag attacaagat ctatgctttt tacaagtgag aatgaagaag aattcgacct 240 gaaacagacc aagatcatgc gtatcattgg tatgtcagtg ccgtcagaga ttctacatca 300 gattcgtgat aggacgactg gtactgaaat gtgggctgcg ctgagtgacc tgttcgaaaa 360 taaggcgaac aaaacggtga aggcccacac aattcgtcga ctgaggaatg aactctggag 420 catcaaattg gcagttggtg ggaatactac cctgcacttg agcaagatgt tcaacctcaa 480 gactgaattg gagactttgc agtacaatgt ggatgatctc gacatggtag aagcactgct 540 ggtaagttta ccggatcagc cagagttcga gcggatgaag tcatctattc tctacgcagc 600 tgacgcaagc ttgttcactc ctgctaaagt tcgtgagtta attcgagaag cggcttctcg 660 acagaacgaa cttgttggaa agggaggtgg cggacaacga ggagggcata aagacggagg 720 aaatcatggt ggaggaactg caggaaaggc tgataaccca agaagggaga aaaacaacga 780 cttcgtgaag aagaagccga aaaagtgcta tctctgtgag agtacagagc acttgaaggc 840 tgcatgccca gagaggacgg atcgtaaaag cggcgctgga tcaaatgaaa agcggaaacc 900 gcgggggaac gtgactcttc ggcaagagaa ccgctcacga ccaagacctg atcaggaaga 960 tgaggacgtt ggtgtggtgg caggtactct agatcgcatg atgatcgatg cgagcgtgaa 1020 gaccagtgtc agagtgtctg aagacgaact gacggatgag gtcacacagg acaacgaggg 1080 caacagtggt agagctggtg tgaacggtga catgagcagt ggttggcggt tctttgacac 1140 ggctgcaaat gtgcacgtaa ccggcaacag aacgtacttc tgtgcgttta cggaagatac 1200 aagtcagtca caaagtgtac acgggcttaa tacaacgttg gcttctcgta tcgcaggagt 1260 tggaactgtg gcgctagtaa ctgaagtgga cggtgaatca actgtggttt acctgaacga 1320 cgtactatat gtacctggtg ctgagtttgg tctgctttca ccaggactgg ctgctgaaca 1380 agggttcgac ttcgattatg atcaatcttc gtcaacgttc aacgttacct atgaaggaag 1440 aacggtaatt gtagctacgc ccaatgaagc tacgtggggt ttcttcgtga ggcacccgtc 1500 gacaggagga ggagtgagtc taccgaacat atcgctgtgt aactacactg cgttggatgg 1560 ggtggctcca ctttcacgct ggcacgagag gctgggacac atatgtccac aatacttgaa 1620 gacaatggca gataagagcc ttgttaaggg gatgatgttg actcagagac agggagcgtc 1680 gacatgtgat gcttgtcata ttgggaagca aagaaaaaaa acatatcaga agaagctaga 1740 tcgaggtctg aagcagccca atcagatgat ctatgcagac ttgctgatcc cgaggaaggg 1800 gaacggtact cgcttcgaag cggtactggt cctactagat ggttattcac gcttcgtaac 1860 ggtgcacatg ctgacatcta agtcaagtga gctggtgaat aagctcctta aggactatat 1920 cttctgggca gagcgtcaat ctgggagaaa ctcagaagaa aaagaagaag gcgagcaagt 1980 caagtaccga gttcgtcagg tactgacgga caaaggagga gagttaatta acgaagccat 2040 gcaagactgg tatcgaactc aaggaattga gcacgttctt gtaggaccca agagctcaca 2100 actcaaccta tgcgaaagga cgcatcaatc tcttatcgag atgaccaagg cgtcaatgca 2160 tcacgctggg tacccaagaa gcttgtggcc agaagcgcta cgaaacgcgg tctacataaa 2220 gaacagggtg tacaacaaag gcaccggtgg tattccgttc gagatgatgt tcggggtgaa 2280 acccgatata catcacattc gtacgtttgg agcactcgca tatgttcacg ttccgattca 2340 accagggcgt cgtaagcacc atgacaacac caagatcggg ttcgtgcttg gatatgcaga 2400 ggatgtagtc ggctgcaaag tgtactttcc tgaagatcgt acagcaaagt ttgtcgccga 2460 cttacgcctc acagaagacg tagtatacca agatcgacat gaagcatcag tcgatgatgc 2520 agacctggaa tcattgcatt ttgaaccgtc tggagaggac agtgctgaca tgagtgtggc 2580 aagaacaagt tgccagtcca ctcgttcgct ctactctacg gatttggacg agtccgtggg 2640 tttagaccct ttggaactcg aggaggagaa gaatgagaat gatggtgggg ttgtgcaaca 2700 tgagctgcag aatgcagaag gcgatgcgaa agatacacag atggggtgta cgagtacaca 2760 ccacgaggtt ggatctggta cgcacgaggt tggatctgag gaaacatcgc agattatcgt 2820 gaagttaaac tctggagccg caactgatgt tggtggagtg agcacagcga taccaactga 2880 agtaggtgat gtggtggata ttgaggagac tctatccgct ggtgaaatgg agacgcagcg 2940 gaccaatggg cacgaaacat cagtggtgca ttcgactatt cagttcggac tagacactga 3000 agatgtgggc gaagacacag cgtttgctgg ggatatcgag tcgggtatcg gaaatgagca 3060 acaatcgtgt ttgcgaaagg ataataggat tggaggacga tgaccaacat gatgtattgg 3120 tggacggtca cccggtcgat ctgacggaaa gtgatgaatg cttttctgtg atgagtgtct 3180 gtggctcaga gtcgagtcac acacatgagt gcatcgaaga ctatgatctg gacgagaaag 3240 ttaaggaaat acttgaacag gaccagatgg ttgtcgagaa tactgcacta cctattgcta 3300 aggttggcaa gcgaaatcat cgtgatgaaa ccgattcgga gctattgcga gtggagcaaa 3360 gggctgaaaa actaggacct aagaaaacac gaactggact tcgcgaatac agtaagcgac 3420 gacgaccccg ctatctcgac gactatatcg tcaatgttgc ccaacaaacg gagcgcattt 3480 tggacaagaa tggtaaggcc attcatgcga gctctgcttc aattccaagg aacaatcggg 3540 agatgaatcg ataaaagtag cgagaatctg gctgcaggca gacagggaag agatgagtgc 3600 gctgcgtgct aaaggcgtta ccatggagat accgtatgag gacgtgccag agaacgcaaa 3660 gccgataaat acgcgatggg tacgctcagt gaaaacggat cgacagggat atgtgattcg 3720 ctttaaatca cggattgggg cctttggaaa ccaccaacga ccgggaattg acttctcaga 3780 gacgtttgcg ccagttgcgc gaatgtcgtc ctttcgaatg gtagtggcat tggcagcagc 3840 actacatctc gtattgtatg gcggtgatat taacattgcg tacttgagtg caatgcttgg 3900 aattcgtcag tatttgcgtt cgattgatgg cttcccgtgt aaggaagagc atgtgtacgt 3960 agtggtgaag gcactgtatg gcctaaggca atcggggaga gagtggaaca cggagttaaa 4020 ccgttggctg atgaagcatg ggtatcaacg ctcattgact gagccgtgcc tatactacaa 4080 gttcaggaac gatgttatca tgttagtgtt agtctacgtt gacgacatca tggtggccac 4140 taatgatgag gagagcaaac aaaagctgtt tgaagatctc gatgatgagc acgggatcaa 4200 ggaccaagat cccttgaagg aatatctagg aatcgaggtg gatcaaagca acagagggat 4260 aactgtcaag cagagcaagt acgcgaatga tgtgctggag actttcggct tcaacaacgc 4320 gcacgctgtg agtaatccta tggagaccaa tatgcgtttg gtaccattgg ataaagatca 4380 acagacggac accagctttg actacagaag agcgattggc atgatgatgt acttagctac 4440 tggaacacgc ccagatctag cgtttgtgat tggccaatta agtcgattcg tagccaaacc 4500 gtcagcgaag catgttggag cactgaaacg tgtgcttcgt tatattgctg gaactgttga 4560 ctacggtatt acgtatgggt actcaacgga aatgccaagt acggttgtac tgaatggcta 4620 ctgtgacagt gactgggcga atgacccaga atcgaggaaa agtacaacag ggtttgtaga 4680 tacacttggt ggtggtgcag tctcgtggat gtctcgccga caatccattg tagctctctc 4740 tacggctgaa gccgaatacg tggcagcgtg ggaagccacg atggaggcaa ccgcagcaag 4800 caatgtattg caagaactac tgcaacatca agatgtgaaa ctaaggcttg ggattgataa 4860 ccaagcagcc cacgtgttgg caaccaatcc aacatacagc cgtcgaaccc gacacattga 4920 actccgctag cactttgttc gagaacaagt gcagaaggga gttgtggatc tctacaagat 4980 caaaggtgac gagaacccgg ctgatgaggt tattaagccc ctggagaaga acaagctgaa 5040 ggctttgttg gagcttgtgg gcgtgggtgc caaccaatcc tccatcgcgc cgagaactgc 5100 aacgtgaaga tcaaagctta tgctttgaag aaggcg 5136 // ID Copia-8_PSo-I repbase; DNA; PLN; 4457 BP. XX AC AAQY01000292; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PSo_; KW Copia-8_PSo-LTR; Copia-8_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4457 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000292; Positions 68049 63593. XX CC Positions [1884-2384] - Integrase core CC 'AATCA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 735..2417 FT /product="Copia-8_PSo-I_1p" FT /translation="MEGDQTKMVMEVFGNNACPELAPTLLSSVPDDASDYV FT AETDRMKRLLYKLKGDGRRCGAKRDERKNRHADRRNPNSHGHRSGNRHNDD FT QHWRNQRNNNDNSDRLPQQQNNGQAFAAAGHRGEIHCHVCGKPGHKIFTCP FT LVEQAKQLATRGSANVGAAADDDTSRDSDDEGYVWVAADDAERGASATRGN FT VWTVDSGATHHLCIDRDQLFAIEPAFLSVRVANGDVVAATEKGKTVITTMA FT EGVPRTVLLENVYFAKGIDRNLISVAQLTARGYTCTFGEEQCTITNKTGKI FT VAEVGNSASTGLWSVGIEQVAASFAAMTTSTLQQWHERLGHVNYQDLVRMT FT DKNLVEGMVASNRKVDFCTNCAEAKQARRAKNKQDTSTSAPTDEPGATLCV FT DLKTDMTPDRLGHKHILTIVDHATNYNRVYLLRKKSDAEGHLEDFVSEFER FT QYDTKVKMIRSDGGGEFGSTRLGRFLRNRGILHQETEAGMSSSNGKAERFH FT RTVMDSARAMLWASALPQRFWGDAVLYASYIRNYLPTRANAHPQIRLEVYE FT PHRSCNEAISEKAR" XX SQ Sequence 4457 BP; 1162 A; 1197 C; 1222 G; 876 T; 0 other; ggttatgagc ccaactggct cgccttctgc agcgaccagt gaagacttcg aagactcgcg 60 gtgcgaccac gaagaccttg aaaaatgctc agaggcacga ggcgctaacg aggctgacat 120 agaccaccaa gacggaagga atactcgcct aggactgcca gacgacctgc acttcgaccc 180 ttcggaccaa gagacaatgg agcagcacga ccagctccag ctcatccttc gactgcagtc 240 cgagctggca gaactgaaga agcagctcgc ggcgcgagcg ccccgtgccc cctccatgtc 300 ggatactagc atggaaaccg cacctccatc accgaagaag cctaaaatca aggacgtacg 360 ctgctcgaac ttcaagggaa acgaggttta ccctgggtta ggagctggct tcgagaattt 420 catccacgag ttcgagcatg caataaggac ggaggagctc gtgaacggat ccacctggac 480 cgacgacatc aaggcatcgg tgattgtcaa cttcctcgag tggaaagcgt ctaggtacta 540 tcacaagaag aactcagagt ggcagcgccg tcatatggtg acagcatgcc gtactcagat 600 gtgaagcgcg cgatgcgtgc agagtttggc tgttaactaa gccaactcga actcagcacg 660 aagatgcagt ataacaaccg tgaaggcgat acgtggcatg actacctgga atacttgaac 720 ttcatcgaga cctcatggaa ggtgatcaga ccaagatggt catggaggtg ttcggaaaca 780 atgcatgccc cgagttagcg cccacgctgt tgtcttcagt gcccgacgac gcaagcgatt 840 acgttgcgga aactgatcgc atgaagcgac tgctatacaa gctgaaaggt gacgggcgca 900 gatgtggtgc gaagcgagat gaacgcaaaa accgtcatgc tgaccgccgg aacccgaatt 960 cacatggcca ccgcagcgga aatcgccaca atgatgatca gcattggcgt aaccagcgaa 1020 acaacaacga caactcggat cgacttccgc agcagcaaaa taacggccaa gcctttgccg 1080 ccgctggtca tcgtggtgaa atacattgcc atgtgtgcgg gaagcctggt cacaagattt 1140 tcacgtgtcc actcgtggaa caggcaaaac aactagccac cagaggaagt gcgaacgtag 1200 gcgctgctgc tgatgacgac acatccagag attctgatga tgaaggctat gtctgggtcg 1260 ctgccgacga tgccgagcgc ggcgcttctg ccacgagagg aaatgtttgg acagtggatt 1320 cgggagcaac tcaccacctc tgcatcgacc gtgaccaact tttcgcgata gagccagcat 1380 tcctgtcggt gcgagtggcg aatggagatg ttgtcgccgc tactgagaag ggaaagactg 1440 tcatcacgac gatggcagaa ggagtgcctc gtactgtcct gctagaaaac gtgtacttcg 1500 caaaaggtat tgaccgcaac ctgatttcag tggctcaact caccgcccga ggctacacct 1560 gcacctttgg tgaggagcag tgtacaatta cgaacaagac gggcaagatt gttgccgaag 1620 tgggtaattc agcctcgact gggctttggt ctgttggaat cgagcaagtc gcggcctcct 1680 tcgcagcaat gacgacctct acgcttcagc agtggcatga acgcctgggg cacgtgaact 1740 accaggatct ggtacgcatg actgacaaaa acctcgttga aggcatggtt gcctctaatc 1800 ggaaggtgga tttctgcacg aactgcgctg aagcgaaaca agctcgacgc gcgaagaaca 1860 agcaggatac ttctacatct gccccaacgg acgaaccggg cgctaccttg tgcgttgacc 1920 tgaagacgga catgaccccg gatcggctcg gtcacaaaca cattttgacc attgtagacc 1980 acgctacgaa ctacaatcgc gtttacttgc tccgcaaaaa gagcgacgcg gaagggcatt 2040 tggaggactt tgttagcgag tttgagcgac aatacgacac caaggtgaag atgattcgct 2100 cagacggtgg tggtgaattt ggcagcacca gactcggccg cttcctccgc aaccggggta 2160 ttctccacca agaaacggag gcgggcatgt catcatcaaa cggaaaagca gagcgttttc 2220 accggactgt catggattcc gcccgagcga tgctctgggc ctcggcattg ccacagcgat 2280 tttggggcga tgctgttctg tatgcgagct acattcgcaa ctatctgccg actcgagcga 2340 acgcacatcc tcaaattcgg ctcgaagtgt acgagccaca tcgctcatgc aacgaagcga 2400 tcagcgaaaa agcgcgctga aagaggagtt gttattggca tcgacttcaa gaagaaagcg 2460 taccgtgttc tcatcccgcg aaccaaacgt gttatttcta caacacacat ccggaacgtt 2520 gaccgtctgg actcgcgagc cgtgggacga tacatggacg ctgtcgacgc agacaatagc 2580 ggcgaggagg aggatgctgg cgatcaacag tacgaaacca acaccccaca tgacgctaat 2640 ggtgaggaag cacggctggt agccctgcag agcagcatca acttacgtcg cgtgccatcc 2700 agcgcatctt tggcctgaat cgaggtacac gagcactacc acgcgatgac tttcggctgc 2760 cccaatcttt tctcgaagag ttcgccactc cggcatctgt cctgctcact atcgtactca 2820 aggagggtac tgcctttgcg gtactactag agcgtgacgg gatcaaggag ccagtaactg 2880 tggaggaggc aatgaacagc ccgtattggc aggagtggtg gcaggcaatc gaagaagagc 2940 ttcgagcaat atcgaagaac gctacctggg aaattgtgga cattcctact gatggaaatc 3000 tgataagtgc aaaatgggtg ttcaggctca agtttgacaa caaaggcgaa ttggaacggt 3060 tcaaagcacg gctggtagcg cgcggcttca ctcaaaagtt tgacattgac ttcgcagaga 3120 cctttgcgcc cgtgctcaag atcgcgagcc tgcggttcat tgtggccctc gcatctcagt 3180 ggcatgccgt cattcgacaa ggagatgttc ctaacgcata cctgcgagca gacctcgatc 3240 gacccatcta catgcgcggc cctgtcggac tccaattacc caagggcaaa tgcctactgc 3300 tgcgaaagag tctctacggc cttaaacaga gcggcaagtt gtggaacgac actatacacc 3360 gctacttact gggacttggc ttcaggagga gcgtgcttgt attttcgttg gcatgaaggc 3420 aagctaactg tactgggcct ctacgtcgat gatgtggtgg tcgtcagcca gcgtgagggc 3480 gattccgact ggacgatgca gaagctcgcc gaccaatttc agatcaagga catgggtcca 3540 gccaagaagt gcttgggaat taacattgag cagagcgact gcggcatcta cctccaccag 3600 acagccaata ttgacggttt gctggtgaag tgcggcatgg agaatagccg ccccgtgact 3660 acgccgatgg agtcaactcg ggacctgaac ggagaggaca gcgagccctt ctacgacact 3720 agcatcgagg acagcgagcc cttctacgac actagcatca tgagggagac cattgggtca 3780 ctactatgga ttagcaactg cactcgacca gacatcacga tgcctgtgaa cttcctggcg 3840 cgtttcaacg cctacgtcga ctcattcgac tgcagtcaaa cgtatcctgc gctacttgcg 3900 cggctcgcac gagttgaggt tgcactttcc ccggccgcag gcaccccgac acactattga 3960 ggcagccatc ttcagcgatg cagattgggc cgggggcaag gacgcaaagt cgacttcagg 4020 aggactgctc accatcaacg ccatgctcat ttcgtggtac agtaagaaac aatctacggt 4080 cgccctctct acagccgagg ctgagtacat cgctggggcg acggcagtgc aggactgctt 4140 gtgggtcaag cagctcctga atgaacttga gctgcacggc aaagatgata atatcgactt 4200 gtacatcgac aaccagagcg cgatcaagaa catggagaac gacgtgacga ctgcacgcat 4260 gaagcacatc aacataaaat ttcacttcat acgcgacgcc agtcagcgtg acctattgcc 4320 ctacgactga gatgaaggcc gacattttca cgaagcccct cagcgcaact ctacacgggc 4380 gcaacctagc catgatcaag cttatcaacc cgcacaacga gaagctgtag actcggatca 4440 tcttggtcga ggaggac 4457 // ID Gypsy-2_SMo-I repbase; DNA; PLN; 6057 BP. XX AC ADFJ01003279; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SMo_; KW Gypsy-2_SMo-LTR; Gypsy-2_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-6057 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01003279; Positions 125172 119116. XX CC Positions [5085-5585] - Integrase core CC 'AGCAT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 405..5993 FT /product="Gypsy-2_SMo-I_1p" FT /translation="MAQPAAGGGREKYQKFTNLSDPDSHITAFEVVSLANQ FT EQADAARLRWFPTTLSGPAMDWYAQASAVVAGAQPAFATWDALKRAFLGQF FT RPFGFSTRITEELNSIQLLPGETLQDYTRRYRALLQRKNPAPPAEDQVRCY FT LNGLPYELSFHVKIHRPQDLNAAIEHAATWEQARLGSRSSYASGAYPSVMA FT GVQYMPQPQLQLQSTLLPAVPAAPALSIPMTSQHLPNFESQLAKVKEDVVE FT TLTKQMAELQVNLVRGQTEAQPRKVVDRAEIWCVRCKGYGHYPNECQNPQP FT ARPRCGYCRRTNHTTENCFARMREQQVPAVGPMAAQPVYQTLPGQQMGAGF FT YVQPQTTQPQQGAYPVYAVEPVNQGNLQQVPAYQQQSGWSRRPRGVVICYR FT CREEGHIAPNCPNARKPEGYKPICGICQTQGLHTQDQCPHRLQLPQSQAKP FT ESAGDRGKRVVESKAIFVAAEDFEEERNDPPVYVMETRGAYRQRGGELHTA FT NSGFDFGVDPEAIAKENRRKLKELEAVEKLRSWPEPAGDVAVEEQDHAEDR FT VEVIPSLEEKRKFAQVLENAGLSGPSRMKQQLSEFKMGRKPVLKRKQGERR FT RRYKRVLNLETKPYDILQDLENQRPSITFAQLLQLAPGLRKVVNTAVKEHR FT EVVVNAAWPIIDLNTPVIDGEISGVHLRDCVIDGGSAINVLPEEMVAKLGL FT DPPVPVHFRVRMANQTKSKPLGVITGVKTEIAGFTFFVDYVVLRMEGMKQS FT YPAILGRPWLRQACVDQSWPTGFITLGDGNNTRTVQVAMKNSYGATPIALE FT KDDAIDNSSDTTSGTASVKQESSITEVESRETVETVAVAAVAAQGNSGYEN FT LVLDPMLEGTLSDRLAHWLRGGDVSCGMVSVELNQREEGGALSFPMRFTAD FT AQKEDVLPINEVPAIQVDGTGASTYVTKPELEEVNLGEPGEEKPVKLGRAL FT SNRLRKLVIQLCRRYIDVFAWSYKDMRGISPKLACHRITLKSGAMPVRQRP FT YRMNPHYSKQVKEELEKLLQAGFIFEVEWSEWLSPIVVVLKKTGQLRVCVD FT FRKLNEATVKDGFPLPFTDVVLDAVAGHELYSFLDGFSGYNQVVIAEEDQL FT KTAFVTEWGCYAYRVMPFGLCNAPATFQRAVTAAFQPYMRTSMEVFLDDFS FT VFGAEEDHVNSLEKCFVRCREFGMSLNPYKCQLGVTHGILLGRIVSREGMA FT VDPGKVAVIEKLRAPSSVKELQGFLGHVGYHRRFIRGFADKAQALTCLLKK FT GVEFAWSEKCQQAFEELKRALVQAPILRMPDWEVEFHVHVDTSGVAIGAVL FT CQPHENWDHPVCFSSRQLNLAERNYSATEREGLGMIYTIQQYRHYLLGREF FT VFYLDHQALKYLISKPCKTGKIMRWLLLLQEFEFRIVLKPGKSHSMPDHLS FT RLPAVESSAGVEDEFPDATVYKIELLPGWYEEMMEFMSTGVYPPELTKSER FT RRLLLQSRLFTVVAEHLYRVGRDGVLRRCVLPEEVPRLLRECHDSAVGGHF FT HAANTAELIQRAGYWWPTLRKDVLEYVKTCDQCQRAGKPDRRSYLPLQPIV FT PVMAFEKWGIDFCGPFPPARRTGCKYVVVCTDYVTKWVEVKPLREDTGRKV FT AEFLYEQVITRFGCPLELVSDRGTHFLNEVVEALTTVYDVYHSKSTPYYPR FT CNGQVERTNGTLCRVVTKTCSATRGDWDKRIQDAVWAYRVAFKVTTKFSPF FT QLVYGQEAVLPIELELPALRTAVEHDMDWQGSLEKRVKELDVLDEDRLVSY FT QNRRVIQARRKAWHDKNLRKREFTKGDLVLLYDSKFWKHPGKLKMRWLGPY FT RVMEVSAKGVVQLEDLAGNPLPTKVNGFRLRRYYTRQADQQ" XX SQ Sequence 6057 BP; 1522 A; 1351 C; 1918 G; 1266 T; 0 other; aatggtgcgt cagccgggag cctacctcga gtagcacaga ctgggtagcc gtggaccatc 60 cggaacaccc ctgtggaaag aggaggccgc tgagccgaca cccggaatac tatcgctttg 120 atgaagaaac taaacaaaaa caaaaagagt ctcgaagcga gagatacttg agaaggaatt 180 cggtaccagc tgagaccagt acaccgtgga acagcccgga gcagcgtaga gtagagagtg 240 tagaggaggg caacaactgg ggggagtttc agagttcatc acctccagcc cccccgactt 300 caccagaggc ggagtttaca ctgccaactt ctccaaccgg atcggcaagc ctgacagtga 360 ctttgaaccc ggttaatctg gttccacctg cgccaccaaa caatatggct cagccggcag 420 caggaggagg aagagaaaaa tatcaaaagt tcaccaacct gagcgatcca gattctcata 480 tcacggcgtt cgaggtggtg agcttggcaa atcaagagca ggcggatgca gcgaggctga 540 ggtggtttcc cacaacgctc tccggtccgg cgatggattg gtacgctcaa gcttctgctg 600 ttgttgcggg agcacaacca gcatttgcca cctgggatgc gttgaaaaga gcatttctgg 660 ggcagttcag gccattcggg tttagtaccc ggatcaccga ggagttgaat tctattcagc 720 tcctgccagg agagacgttg caggactata ctcggaggta cagagcgcta ctgcagagaa 780 agaatccggc tccacctgca gaagatcaag tccgttgtta tctcaacggg ctgccctacg 840 agctcagttt ccacgtgaaa attcacagac ctcaagattt gaatgcagct atcgagcatg 900 cagcgacgtg ggagcaagcg aggctgggat cgaggtcatc ctacgcgtct ggagcttacc 960 caagtgtgat ggcgggggtt cagtatatgc cccagcccca gttgcagctc cagtcgactc 1020 tgttaccagc agtaccggcg gctccagctc tgtcaattcc aatgacgagt caacacctac 1080 caaacttcga gtcacaactg gcaaaggtga aagaagatgt agtggaaacc ctcaccaagc 1140 agatggcaga gctacaagtg aacttggtga gaggccaaac tgaggcgcaa cctcggaagg 1200 tggtggaccg cgccgagatt tggtgcgtgc gatgcaaggg ctatgggcac taccccaatg 1260 agtgtcagaa tccccagcca gctcgacctc gctgtggtta ctgtcggcga acaaatcaca 1320 ccactgagaa ctgctttgct agaatgaggg agcagcaagt tccagcggta ggaccaatgg 1380 cagctcagcc cgtgtaccag accttgccgg gccagcagat gggtgctgga ttctatgtgc 1440 agccccaaac gactcagcct caacagggag cttacccggt gtatgctgtg gagccagtga 1500 accagggaaa cttgcagcaa gtcccggcat atcagcagca aagcgggtgg agtcgacgac 1560 cccgcggggt cgtcatttgt taccggtgcc gggaggaagg gcatatcgcc ccaaattgcc 1620 ctaacgcgag gaagcccgag ggttacaagc caatctgtgg tatctgtcaa actcaaggct 1680 tgcatactca ggaccagtgc ccacaccgac tgcagctacc tcaatcgcag gcgaaacccg 1740 agtccgctgg ggaccgaggc aagcgggtgg tggagtcaaa agcaattttt gttgcggcag 1800 aggattttga agaggagagg aacgatcccc cagtgtacgt gatggaaacc cgaggagctt 1860 accgacagcg aggaggggaa ttgcacactg caaactctgg tttcgatttc ggagtggacc 1920 cagaggccat tgcaaaggaa aatcgccgta agctcaaaga attggaggca gtggaaaagt 1980 tgaggagctg gcctgaacct gcgggtgatg tggcagtgga ggaacaagat cacgcagagg 2040 atagagttga agtgattccg agcttggagg agaaaagaaa atttgctcaa gttctcgaga 2100 acgcagggct gtctggtccg agccggatga agcagcagct cagtgagttt aaaatgggta 2160 ggaaaccagt cctgaagagg aagcagggtg agcgccggag acgatataaa cgagtactaa 2220 acttggagac aaagccgtat gacattctcc aagacctgga aaatcagagg ccgagcatca 2280 cctttgctca gttgcttcag ctggcgccag gcttgaggaa agttgtgaac actgccgtga 2340 aggagcatcg tgaagtggtg gtgaacgcag catggccgat tatcgacctt aatacgccgg 2400 tgatcgacgg ggagatctct ggggtgcatc tccgagattg cgtgatcgat ggaggttcag 2460 caatcaatgt tttgccagag gagatggttg ccaagctcgg gctagatcca ccagtcccgg 2520 ttcacttcag ggtgaggatg gcgaatcaga ccaagtcgaa gccactcgga gtgatcacgg 2580 gggtcaaaac tgagatcgca ggcttcacct tttttgtgga ttacgtggtg ctgaggatgg 2640 agggcatgaa gcagagctac ccggcaatcc taggaaggcc gtggctgagg caagcttgtg 2700 tggatcagag ttggcctacg ggttttatca cgctcggaga tggcaataat actaggacgg 2760 tacaggttgc catgaagaac tcgtatgggg cgaccccgat tgcgctggag aaggacgatg 2820 ctattgataa cagcagcgac acaacctcgg gaacagcctc ggtgaagcag gaaagttcaa 2880 tcacagaggt ggaaagtcgg gaaacagtcg agacagtggc tgttgcagca gttgcagccc 2940 aggggaattc cggatatgaa aacttggtcc tggacccgat gctggaggga actttgagtg 3000 atcgtctggc gcactggtta cgaggcgggg atgtgagctg tggaatggtg agcgtggagc 3060 tcaatcagcg agaggaggga ggagctttga gctttccgat gcgcttcacc gcagatgccc 3120 agaaagagga cgtattgccc atcaacgagg tgcctgcaat tcaagtggat ggtactggag 3180 ccagcacgta tgtcaccaag ccagagctgg aggaggtgaa cctcggagag ccaggggagg 3240 agaagcctgt gaagctcgga agagcattgt ccaataggct gaggaagttg gtgatacaac 3300 tctgccgcag atacattgat gtatttgcgt ggagttacaa ggatatgcgg ggcatcagtc 3360 caaagctcgc ttgccatcgg atcactctga agtctggtgc aatgccagtg aggcagaggc 3420 cttaccgaat gaatcctcac tactcgaagc aggtgaaaga agagctcgag aagttgctcc 3480 aggctgggtt cattttcgag gtggagtgga gcgaatggct ttccccgatt gtagtagtgc 3540 tcaagaaaac cgggcaactg cgagtgtgcg tggatttccg caagctcaac gaggcgactg 3600 tgaaggatgg atttccgctg ccttttactg atgtggtgtt ggatgctgtg gccgggcacg 3660 agctctactc gtttctcgac gggttcagcg gttacaatca ggtggtgata gcggaggagg 3720 atcagttgaa gacagcgttc gtcacagagt ggggctgcta tgcgtaccgg gtcatgccat 3780 tcggcctatg taacgcccct gccacttttc agcgagcagt gactgcagct ttccagccgt 3840 acatgcgaac aagcatggag gtcttcttgg atgactttag cgtgtttgga gctgaggagg 3900 atcatgtcaa ttcactggag aagtgtttcg tgaggtgcag agaattcggc atgtctttga 3960 acccttacaa gtgtcaactt ggggttacac acggaatact tttgggaagg atagtttcca 4020 gggaaggaat ggcggtggat ccgggaaagg ttgcggtgat tgagaagtta cgagctccga 4080 gttcggtgaa agagctgcaa ggattcctcg ggcatgtggg gtaccatcgc aggttcatcc 4140 gagggtttgc cgataaagct caagctctca catgcctgct caagaaaggt gtggagtttg 4200 cttggagcga gaagtgccag caggcgtttg aggagctaaa aagagcgctg gttcaggccc 4260 cgattctgcg aatgccagat tgggaagtgg agtttcatgt gcatgtggac acctctggag 4320 tggcgatcgg tgcggttctg tgtcaacctc acgagaattg ggatcaccca gtctgcttca 4380 gcagtcgtca gctcaatctg gcggagagaa actactcggc aacagagaga gagggactgg 4440 gaatgattta tacgatccag cagtatcggc actacctgct gggacgtgag tttgtcttct 4500 accttgatca tcaagctctc aagtacctga tcagtaaacc ttgtaagacg ggcaagatca 4560 tgcgctggct actgcttctt caggagtttg agttccgaat tgttttgaag ccgggaaaaa 4620 gccatagcat gccggatcac ttgtcgaggt taccagcagt ggaaagttca gcgggagtgg 4680 aagacgagtt tccggatgcg acagtgtaca agattgagct cttgccgggt tggtatgagg 4740 agatgatgga gttcatgagc actggagttt atccacctga gttgaccaag agcgagagaa 4800 gaagactgct gcttcaaagc cggttgttta cagtggtggc tgagcacctg tacagagtgg 4860 gacgagatgg ggtgctgcga cgatgcgttc taccagaaga agttcccagg ttgctgcggg 4920 agtgccatga ctcggccgtg ggtggccatt ttcatgcagc gaatactgcg gagctgatac 4980 agagagctgg ctactggtgg cctactctcc ggaaggatgt gctggagtac gtgaagactt 5040 gtgaccagtg ccagagagct ggaaagccgg acaggaggag ttatttgccg ctacagccaa 5100 tagtaccggt gatggcattt gagaagtggg gcatagattt ttgtggcccg tttccaccag 5160 ctcggcgaac aggctgtaag tacgtggtgg tctgtacaga ttacgtgacg aagtgggtgg 5220 aggtgaagcc gttgcgggaa gacaccggca ggaaggtggc ggagttcctg tacgagcagg 5280 tgatcacgag attcggttgc cccctggagc tcgtcagtga ccggggaacg cactttctta 5340 acgaagtggt ggaggctttg acgacggtct acgacgtgta tcattccaag tcgacgcctt 5400 actacccgag atgcaacggc caagttgagc gcaccaatgg aaccttgtgc cgagtggtga 5460 ccaaaacatg ctcagcgact agaggggact gggacaagcg gatccaggat gcagtgtggg 5520 cttaccgagt tgcattcaag gtaaccacta agttttcacc attccagcta gtttatggac 5580 aggaggctgt gttgccgatt gagctggagc taccggcgct tcgcacagcg gtggagcatg 5640 atatggattg gcagggaagt ttggagaagc gagtgaagga gctggatgtc ttggatgagg 5700 atcggttagt ttcttaccag aacagaaggg tgattcaagc tcggaggaaa gcctggcatg 5760 ataagaacct gcggaagcga gagtttacga agggggatct ggttcttctc tacgactcca 5820 agttctggaa gcacccaggg aagctgaaga tgaggtggct gggaccatac cgggtgatgg 5880 aggtgagtgc aaaaggtgtc gttcagctgg aagatttggc aggaaacccg ttgccaacga 5940 aggtaaatgg ttttcgattg aggaggtact atactagaca agcggatcag cagtgaagac 6000 gggtggagag tggtgagagc agctccaggg gctggagctg gattcgaggt ggagtgg 6057 // ID Copia-2_PPa-LTR repbase; DNA; PLN; 493 BP. XX AC . XX DT 16-DEC-2009 (Rel. 15.04, Created) DT 16-DEC-2009 (Rel. 15.04, Last updated, Version 1) XX DE Copia-type LTR retrotransposon: long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PPa-I; KW Copia-2_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-493 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(4), 568-568 (2010). XX DR [1] (Consensus) XX SQ Sequence 493 BP; 154 A; 72 C; 123 G; 143 T; 1 other; tgttaaagta aaagtagaaa atattacctt gtataggata ttaccttagg taagttgcta 60 gtggtcaaag gtttgactct tggtatatgg taagggcatc caatggatat aggacgaagt 120 catggaccaa gagtcaaagt caaaaggata aagtattaac aagggaatat ccaaagacta 180 agtatgagtc attagtgtgt gtcataggat accctcgtag ttcgtgagat gccaaaggat 240 cctaagagca tgtgtgtaag acgtaagagt aattagtatt ggacatagga tactcttggg 300 actcgtgaga tgccaaaagg atcctagggc catgtgtgta aaagtcaaag ggtggamgtt 360 gtcttttagg gcagcaacca ccacctataa gtaatgggtg ttggaagtga gagatatctt 420 actccatact ctctttgtgt gcaaccttgc tgatgctaag tgttgtgact tctaagtact 480 tgttttctca ata 493 // ID Gypsy-37_PIT-I repbase; DNA; PLN; 4992 BP. XX AC AATU01000922; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-37_PIT_; KW Gypsy-37_PIT-LTR; Gypsy-37_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4992 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000922; Positions 54547 49556. XX CC 'TAAAT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 37..1227 FT /product="Gypsy-37_PIT-I_1p" FT /translation="MSTTPTVNDASVSNAATTASTTATAASTTTTQRTLRP FT RQASRSVQEEQAARTHEVTQESTATGNRGQARGRGQGRAARGRRAATTGGG FT EGRQANGAPNMSTAMQSGGATSSVLVGNHPTVPQPIFTFVTAPKVANVSHE FT GMTRWLDLRFEYEEAIKARCKTTGEELDAVMTSVRNSFDESLLDTLCEAAW FT EMDKSDLTDDFLWDWIMKTVESFKYRTLPNIEVLFKRELSMDESQGDVEAQ FT VISYFHSCNTLIRTNGLVGLFKTDDGLKSMCKILVNSLPAKLKKRVKNEID FT FRAQGAKSSVPELFKLIMEQASDQEKIDRALRVAGVGGKRKQKYHESDRNS FT KANSFAPRKKQSQGSTPITAKYGSQDAALKSKVPHSKVAAAASSVAVSTVV FT KGI" FT CDS 1666..4920 FT /product="Gypsy-37_PIT-I_2p" FT /translation="MLGIDVDRQLELLVWSDGSDDDDIDDDPAVSRKDDDE FT IKEAVEAMIARASDEGFPSERVDRLRTVIYMYDIWRVNLGDDPPAKVPPLK FT IRLKSGAKPYKTKARKYPPELQRFLEDFNNTLESLGWVYENPDARWACPAL FT PVKKAGGANEFRQTTDYKPTNAQVEPLVGTMPNLDVDLERVAGSLFFGLFD FT FIKGYWQLPLDESSQEILSYMTHRKIYTPRRVPQGCSDAALYFQATMERCF FT TSLLYYHLLVWIDDLLLYAKTLDEYLDKLAELFSLVNELGFKLSATKSSVF FT KKQVKWCGKLIDGSGVRHDPERIGALRALPYPSTAGELQQFICSTNWMRTS FT IIDYGRLVRPLQEKFDSVMAHTSKRTKRVASGIPIMLSAAELEAFDKLKDA FT LAGSAMLASPKMEAETILVTDASDVGWSVIVTQVIDWKAQIPIHEQEHELL FT VCMGGTFTVAQRNWSVIEKEAYPIITACDKLSYLLMRPKGFRMYCDHRNLI FT HVFAPAQEIKKHVRGKLLRCSMKLMEYRFSIEHIEGVKNVWADMISRWAGC FT LHPNDVAMKRIRQKRARPDNKETKDADRGEDRGGECQPKPPPIRPFSDDSF FT EWPDVAAILASQKQHEAARPRGISQRNDGLWAKDECIWIPSEDRSIVQRLL FT VVDHCGSQGHRGRDSLMEIMQRRFSIAKLRERVDNFLRGCLMCHHVKGGRI FT VHRPWAETFRSNERNEALHWDYLHLGKSFGNYAYLLVMKDDATHYCELVPC FT IVPTSVVAAQAIMDWHSRFGAPGLWISDNGSHFKNEVVSEVSKRLNSNQKF FT SLAYSPWINGSVERLNKDIIQVLRAMCLEYQVDIKDWTYFVAALQANLNHT FT PVPSLGNHAPVELFCVLPAVSPLIFYLNEDQKRLVDLGELPDHIETKLEAL FT RESAQLMHKKVIDARSKQTKRNQRKPKHTLKPNFDEGDFVLRSRVDQKHSD FT KLLVTWIGPYQVVKAEENSFRVRHLVTGAEQDVHSSRLEFHADKSFEVTEE FT IREHVASQGIILTVASLLEHRWNTSKHEFEILVSWKGLEPIDDSWESMTSL FT YKDIPVMVKNYSASRGNRAFQDAVAAMT" XX SQ Sequence 4992 BP; 1353 A; 1097 C; 1424 G; 1118 T; 0 other; aagttaactt tagttattca aggttcgacg acgaaaatgt caacaacacc taccgttaac 60 gacgcttcag tgagcaacgc tgcgacgact gcaagtacga ctgcgacggc agcaagtacg 120 actacgacgc agcgaacact tcggcctaga caagcatcac gctcggtaca agaagagcaa 180 gcggctagaa cccatgaagt cacccaagag tcgactgcga cggggaatcg aggccaagcg 240 cggggtaggg gccaaggaag agcagcaaga ggacggcgag cagcaacgac aggtggagga 300 gaaggtcgtc aggccaatgg cgcgcctaac atgtcaactg ccatgcagag tggtggtgct 360 acgagtagtg ttttggtcgg caaccacccg acggtaccgc agccgatatt cacctttgtc 420 actgcgccta aagtggccaa tgtctctcat gagggcatga cgagatggct tgacttgcga 480 tttgagtacg aagaagcgat taaagctcgc tgcaaaacga ctggcgaaga gctggatgct 540 gtcatgacga gcgtccggaa ttcgttcgat gaatcactgc tggacacact ctgtgaagca 600 gcttgggaaa tggacaagag cgacttgact gacgactttc tttgggattg gatcatgaag 660 actgtcgaga gcttcaaata tcgcactctg cctaacattg aggtgttgtt taagcgtgag 720 ttgtcgatgg atgagagtca gggtgatgtg gaggctcagg taatcagcta tttccactca 780 tgcaacacgc tgattcgtac gaatggactt gtaggtcttt tcaagactga tgacggtttg 840 aagtcgatgt gcaagatcct agtgaactct ttgccagcta agttgaagaa gagagtgaaa 900 aatgagatcg actttcgggc acaaggagca aaatcgagtg tacctgaatt gttcaaactc 960 atcatggagc aggcctcgga ccaggagaaa atcgatcggg cgctacgagt tgctggtgtc 1020 ggcggaaagc gcaagcagaa ataccacgag agtgatagaa acagcaaggc caactcgttt 1080 gcccctcgca aaaaacaaag ccaagggagc actccgataa cagccaagta cggcagtcag 1140 gacgccgcgt tgaagagcaa ggtaccacac agcaaagtgg ccgcagcagc aagcagcgtg 1200 gctgtttcaa ctgtggtgaa gggcatttag tgagggattg tccccgcgtg gagagcacga 1260 cgaacacatc tagctccaac aacaaccagc gcagatctca acccaaccag caagggaggc 1320 accgcacgcc tccatcgaat taagcagtgc ttgcctgaag gaaaaccgac tgtacgagtg 1380 aacgattctc ttgagctacc atattgcgca gatagtggag cgttcaagtc gtgcatttct 1440 cgagctgatg tggacaaatt gagtaaagaa gagattgaaa ctgtggaatt gcggcaacca 1500 attttgtgtg aactggttgg tggacgtact ttgaaggtgg aaacggttgt atatttgaag 1560 ttgtcgctga ggacagcggc tggaccagtt aacattcact ctccggtgga gtgtttgatt 1620 gtggatggtc aagatgagtt cctgcttggt cgcgatgtac taagcatgtt aggaattgac 1680 gttgacaggc agctagagtt gctggtctgg tccgatggat cggacgacga tgacattgat 1740 gatgaccctg ccgtgagcag gaaggatgac gacgagatca aggaggcagt tgaagcgatg 1800 atcgcgagag cttcggatga aggattcccg agtgaacgtg ttgacagact tcgaactgtg 1860 atctatatgt acgatatttg gcgcgtcaat ctgggcgatg acccgccagc gaaagttcct 1920 ccactgaaga tacggttgaa gtctggggcc aaaccgtaca aaaccaaggc taggaagtac 1980 ccgccggaac tacaacggtt tctcgaagac tttaacaaca cattggagag tcttgggtgg 2040 gtgtatgaaa atcctgatgc gaggtgggcg tgcccagcgc tgccggtgaa gaaggctgga 2100 ggagctaacg agttccgaca gacgactgat tacaagccga caaatgcgca ggtggagcct 2160 ctcgttggca cgatgccaaa cctggatgtg gatcttgagc gagtggctgg gagtttgttc 2220 tttgggcttt tcgactttat taaggggtat tggcaactgc ctctagatga atcttctcaa 2280 gaaattcttt catatatgac ccaccgcaag atttacacac cgcgtcgagt acctcaaggt 2340 tgttcggatg ctgcacttta ctttcaagcg acgatggagc ggtgcttcac atctctgctc 2400 tactatcact tattagtgtg gattgatgac ctgctattgt acgcaaagac tctggatgag 2460 tacttggaca agcttgcaga gcttttcagc ctagtgaacg agcttggatt caagctcagc 2520 gctaccaagt cgtccgtatt caagaaacaa gtgaagtggt gtggtaaact gatagacggc 2580 agcggggtga ggcatgaccc agaaaggatt ggagctcttc gtgcacttcc ttacccgtca 2640 actgccggtg aattacagca gtttatctgc tcgactaact ggatgaggac gtcgatcatt 2700 gactatggcc gcctagtgcg accgctgcaa gaaaaatttg actctgtcat ggctcatacg 2760 tccaagcgaa caaagcgagt ggcgagtgga attccgatca tgctgagtgc agctgagttg 2820 gaggcttttg acaagttgaa agatgcgtta gccggcagtg cgatgctggc atctccaaag 2880 atggaagctg aaactatcct cgttacagat gcaagtgacg ttggttggtc ggtgatagtg 2940 actcaagtga ttgattggaa ggcacaaatt cctattcacg aacaagaaca tgaactgtta 3000 gtgtgtatgg gaggaacttt cactgtcgcg caacgcaatt ggagcgtcat cgagaaggaa 3060 gcgtacccaa ttatcactgc gtgtgacaaa ctctcgtacc tgttgatgag accgaagggg 3120 ttccgcatgt actgtgatca taggaatctc atccacgtct tcgcgccggc gcaggaaatc 3180 aagaaacatg tgcgaggcaa gctattgcgg tgttcaatga agctcatgga gtatcggttt 3240 tctattgagc atattgaggg agtgaaaaac gtttgggcgg atatgatatc gcgctgggcg 3300 gggtgcctgc acccaaacga tgtagccatg aagcgcatac ggcaaaaacg tgcacgacca 3360 gacaataagg aaacgaagga tgctgatcga ggcgaagaca gaggtgggga gtgtcagcca 3420 aaaccaccac ctattcgccc gttcagcgat gacagctttg agtggccgga cgttgcagct 3480 atactggcaa gtcaaaagca gcatgaggca gcaagaccaa gaggtatatc gcaaagaaat 3540 gatggtctat gggccaagga tgagtgcatc tggataccaa gcgaagatag gagcattgtg 3600 cagcgactgc ttgttgtgga tcactgcgga tcacaagggc atcgtggtcg tgactctctg 3660 atggaaatca tgcagcgacg cttctctatc gctaaactac gtgaacgagt ggacaatttc 3720 cttcgtgggt gcctgatgtg ccaccatgtg aaggggggaa ggatcgtgca tcgaccttgg 3780 gcagaaacct ttcgtagcaa tgagaggaac gaagcgttac attgggacta cttgcatttg 3840 ggcaagtcgt tcggcaacta cgcttatcta ctcgtgatga aagacgacgc tacccattac 3900 tgtgagttgg ttccgtgcat cgtaccgacc agtgtggtgg cggcacaggc cataatggac 3960 tggcatagca gattcggggc tccagggcta tggattagcg ataacgggtc gcacttcaag 4020 aatgaggttg tgagtgaagt tagcaagcgg ctcaactcaa accagaagtt ttcgttggcg 4080 tattcgccat ggattaatgg atctgttgag agactgaaca aggacatcat ccaggtgcta 4140 agggcaatgt gtctggagta tcaggtcgac atcaaggact ggacttactt tgttgcagct 4200 cttcaagcca accttaacca tacacccgtg ccctcgttgg gcaatcacgc tcccgtggag 4260 ctgttctgcg tgcttcctgc ggtgtcgcct ctcattttct atctgaacga agatcaaaag 4320 agactggtgg atctgggtga gctgccagat cacattgaaa ctaagttaga ggctctacga 4380 gagagtgctc agcttatgca taagaaggtg atcgacgctc gctcgaagca gacgaagcga 4440 aaccaacgga agcctaaaca tacattgaag ccaaacttcg atgaaggaga cttcgtgtta 4500 cgatctcgag tggaccagaa gcacagcgac aaattactgg tgacatggat aggtccatac 4560 caagtcgtta aagctgagga gaactctttc agagtacgac acctggttac cggcgcagaa 4620 caagatgtgc acagttccag attggagttc cacgcagaca agagttttga agttacagaa 4680 gaaattcgag agcacgtggc ctcgcaggga attattctta ctgtcgcctc gctcctcgag 4740 cacagatgga acactagcaa gcacgaattc gagatactcg tctcgtggaa gggcttggag 4800 cctattgacg actcgtggga gtctatgacg agcctctaca aggacatacc tgtcatggta 4860 aagaactact cagcttctag agggaaccgt gcatttcagg atgctgtagc tgccatgacg 4920 tgatgaaaga gtacagtgta tacaacaaga cggtgacaag cgatgttcgt gagccaagtc 4980 ttggaagggc gg 4992 // ID DNA-1N_PPa repbase; DNA; PLN; 202 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-1N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-202 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1012-1012 (2010). XX DR [1] (Consensus) XX CC 8bp TSD. The youngest copies are ~90% identical to consensus. XX SQ Sequence 202 BP; 57 A; 25 C; 48 G; 72 T; 0 other; ggggaatgtt aaatagaccc atgcttttac taaatagacc cacccttgat gaagaatatg 60 gtaatcatga tgaatgtggt tggtttttat tggttgcaga tccaatagtg gagaaatgaa 120 tctagaggtc attttttttt ttcatgatgg ttaggatggg tgggtcgatt tagtaaaaac 180 ttgggtctat ttaacattct cc 202 // ID Gypsy-7N_PPa-LTR repbase; DNA; PLN; 1650 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Gypsy-7N_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1650 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1039-1039 (2010). XX DR [1] (Consensus) XX SQ Sequence 1650 BP; 528 A; 147 C; 335 G; 640 T; 0 other; tgtcgtgttg taacacaacc attaggtgaa agaagaaaga aaagattata ttatagaaga 60 gcttaaataa aaatatttta gcaaattatc ttagaaatat agataataga caaggaggta 120 gtaaaaatta ataagtgtta atattgcctt cttataaaag aggcttctac ttactttgta 180 aggccataaa taaggcaaaa aaaatagatt aagaaaataa atcatatagg catctttaag 240 aaggagttaa gaataggttt tagcaaaaat tatcccaaaa taccaagaat tgatacccaa 300 agaggaccgg ttgtgaacca gggtcgaaat cagaccctaa ggcacaaaac cgcgcaccta 360 cggcaattct agggttcttt ggttgatcaa agagcgggat ttgagagcaa actagtgaga 420 ggttttttga gagttggttt catgtgattt ggagacatat tgagtttttg agggcttttc 480 aaagtgagag atgtactcaa tggttttgga ttttgagaaa taaaaagaag tttataattt 540 tgagtattgt gtgagtgtcg tagcacattt ataagtgaaa ttttgtgaat ttttcattgt 600 gcttgtcttc aatgtgtttg aaaaatttga tgtcaatcga atagttagat tgaaggatat 660 gagagtttta ttggattagg atctcggatt tttgaaattt aggatcagtg agggttttta 720 tgatcctaaa aaatctgcta gtttgattga agcaaaaatt agtgaaagca atttggactt 780 agaaatctac acaccagcca atttttgaag caattgaata gttcaacaag gagaaattgc 840 tgctgaaaga tcaacatcta ggttggagaa ggaaggcagc caacatccga gaggtttagg 900 agctttttct tttgattggt gagttcgatt tttttcaaat tttgtatgct tattaattgc 960 ttgtggattg aaatgtggat gaaatttgag ttgagatcaa taatttgatt agtatttatt 1020 gagattttaa aataactata ggaattgatt aggatttact ttgaattttt ttggatttgt 1080 ttaggatttt ttaggatctc tttaggattt aattaggatt tgattaggat tttttaggat 1140 ttaatttagg atttatttag gatttattag gatttggtta ggattgattt aggatttcat 1200 tagaatttgt taggattggt ttaggatttt attaggattt gtttaggatt tattaggatt 1260 tatttaggat tattaggatt tattaggatt tggttaggat tggtttagga tttcattagg 1320 atttgtttag gattacatta agatttgatt aggattcatt taagattttt atttttaata 1380 tttttaaaga tttctttgat atttttttag gattttttta ttatatatat tttttaagat 1440 taatttataa tttctttatg tttcttttgt aatttcttta agacttcttt tggatttgat 1500 taaagattga ttagcattgt taagatttaa ttagaatttg tttaggattc tattagagtt 1560 gttaggactt tcttgttgca aattctattt tatcttccac agccaagtgc ctggtgcatt 1620 ctcaagcaaa cttcacggaa tacgacaaca 1650 // ID Gypsy-63_PIT-LTR repbase; DNA; PLN; 223 BP. XX AC AATU01007040; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-63_PIT_; KW Gypsy-63_PIT-I; Gypsy-63_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-223 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01007040; Positions 20858 20636. XX SQ Sequence 223 BP; 64 A; 55 C; 53 G; 51 T; 0 other; tgaaggagtc gtgcgtgtat ccacttattg tggaagtcca agagacactt ggtggcacaa 60 gtaagaacca cagattgcca gagtaagaac tagatgaagt agactagatc acgaggaagt 120 cttaatctat aaagtcattc tccatcttac ctcaagctcc gcagtccctc tcaagcaagg 180 ccttcggacc cggttcgctc ctctgcaagc caagggagtg tca 223 // ID Gypsy-15_PR-LTR repbase; DNA; PLN; 446 BP. XX AC AAQX01002972; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PR_; KW Gypsy-15_PR-I; Gypsy-15_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-446 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002972; Positions 257 702. XX SQ Sequence 446 BP; 100 A; 129 C; 108 G; 109 T; 0 other; tggatgccag ggatttcacc ttggtgtcac cacgcctgcg gacgagctac gccagtatgt 60 gatcacagac atcacagcta acccagatgt gtctgacggc cgccagcctc agacaatggg 120 tcgccatgtt ttagatattt caaaccggtc tggctttcag tgcctgaccc ggtctacatg 180 aggaacttag tatgtcgaag tgcatgttgc atctaggacc ctgtccacta cattccggct 240 cttacttcgt cagctccatg gggaccccct tggatcaagc tgaccgaagt agaccagagc 300 gaagggctgg ttaccatcag acctggacct cacttctcaa tcttccatct agctactagc 360 tcaatacact cggcttagtt ccgtgcgggg tggctcccgc atcgtcgtgt gttacaagtt 420 ggtactacaa cccgggaaac actaca 446 // ID Gypsy-40_PIT-LTR repbase; DNA; PLN; 837 BP. XX AC AATU01010462; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-40_PIT_; KW Gypsy-40_PIT-I; Gypsy-40_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-837 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01010462; Positions 11923 12759. XX SQ Sequence 837 BP; 200 A; 172 C; 298 G; 167 T; 0 other; tgtaacaagt atgatacgga tgtggacggt aaggcggtta cgtattgtga tacgggcgag 60 ttcggtgacg cgtccgagta tgacgactcg ctcacggcga atgatgatgc cgacgtgaac 120 gatgatgcgg acgtgtacga tggagcggac gtgacgagta cggtgactcg tttgacgagc 180 acgataggat gggtggaaga cgaaacggtg gtcaggcaga gcgcagaagc tgccaggaac 240 ggacggtact gacgaagtgt ggcatctggc tgctgacggt attgaaggac ggtaggtacg 300 tgcctcccgt atccgaattc gaaagatacg gcgagcaccc ggacaagaga aggcggtagt 360 tttagtttag aattagcggt gtaggcatca ctcagagatt agtggtgtcg acatctttga 420 gattggacgg tgtgctgctc gagctcagtg gagcgagtgg tagtgcacaa acggacggac 480 gaacggacga acgggtggcg cctcggtgga cgagaaccaa ggacagtcgg cgaggagtac 540 agacaggggg aacgctccca agtatgctga cggttgcgta gtagggcggc gtctgaagtg 600 cgtgtcgagc ccaagtgact aagtgggcga cgctggaaac ttactgaact gcggcgggtt 660 tgagtacatt tcgtagagga cgctatctgt atttggggta atagagtagg tgtgcgatca 720 gtggatcaca cgccggcgcg gtgaacagag ttgttcatcg tcggccattt ggatcttggg 780 cgccatcagc cctgggcgac caaccccggc gtgcagggga gtcaaagaca cgttaca 837 // ID Copia-5_ES-I repbase; DNA; PLN; 4992 BP. XX AC CABU01009248; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_ES_; KW Copia-5_ES-LTR; Copia-5_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-4992 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01009248; Positions 5957 966. XX CC Positions [2122-2649] - Integrase core CC 'GTGCC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 58..3696 FT /product="Copia-5_ES-I_1p" FT /translation="MATGSSGEIRRGFAKFSGDPGDYVGWRTLQTSLFMED FT KLHKVLLGVEKAPTDPGPSATPNQTLAYQTALEGYQDKNGQIFTRLMLATS FT ETGGYQSAASQTVQAYAPIGSSYNGDGRGAFLALERKYQAAGVYRTQELHE FT KFISLAVTADHDFDPANVIQDMRRICTELAVYNDTVADHRKTFAFLKALPD FT DHYKEFKTGLLCGQAAGSVLSFEEVADRATSFHAMHIRGKVASKNASGSSS FT RALNTVTHGGARSFRKGGGHHGRGRAQRGGRGRGSWNNSSNRNNGSSRGNN FT SNDQNHGGATSGNGAGGASSDNRPSGRPNHSQQRRGYDRDGLCSYCHNSTE FT HTWTNCPLRASNATRFSNREQQQPQQQQQVNTIAEATTQAWLTHAREVDLT FT LESFEIAIGDPEQVPFAPAASTPEEASDVNVGQVLAAPATASLPLLERAVP FT LQVPIAPATAEETEEPAASYEQEMDPPAAIQHEELVAYTNVFRAVDKTAPA FT EHTRVFIDTAASGHMVSGESPVSQHVVDLVDCDVRIKGSCGTSSATKKGTL FT KFKLKNDKGQPVPIELEVLLVRDLGANTFSVGALDEKGVKTDLLSAPPALR FT SRNLSFPISTAEVPRMYVVNLILDDLNLDLPSSPLVFRADTDAGVWHRRMG FT HCNARALKQLSDKEGTGIKFITNIQPGDCEVCDVSKSKKASHPPVGRARSL FT TRMMLMHLDLWGKHGVPSYSGCQHIVMFTDDKSRMRWGIPLKTKDGVTDAL FT ETLIKEVADPEGICIGKIHCDGAADFKGRFLAMCRSFGIAVETSPPYVPQG FT NAVAERGFGTVIGAARSLMLGAPHLPRQLWAEAVKAAIYIKNRTPTDVLDG FT KAPLEVWEDKPLGSLKHMHEWGSVAFKHVEARSRNDKFSARAKKYYMVGYN FT TTSKTWRLWDPAEPLKITNSAEVSFREVDARDVARPMHGSDPFPEQGQIFQ FT PGIITTGAETKDEEPELAETNDGPDEEPPAVRKSGRTTRPRDRLNLFTTEQ FT VFETEYALVIGGEIGNLGQGIPGQLGYMPADPPNYRAAVNGPDAVGWMKSM FT EEENRSLLDHDVYEWVDPPCDAQIIPSKYIYKWKYNEAGIAVRQKSRIVVQ FT GFYEAETGTDNAAPVASLQAVHLIVAHAAKNGLVLRQADIRTAFLHARMEP FT RSKPVYVIPPEGFSCDSGRARQVWKLRAWLYGLRFSPKRLVGHSARLSPED FT RIC" FT CDS 3461..4711 FT /product="Copia-5_ES-I_2p" FT /translation="MQPRMDLFFAKPTSGRRSSTRGWNRDRNQCTSFPRKD FT SRATAGEPGKSGSSEHGFTGCVFPQKGWWGTLHDFLLKIGFVESTAEPCLY FT ILDDGDVLLLVYVDDILLTGEGENKVLSIVDQLNERFETVDLGGARFLLGM FT GINRDRAAGTILLEQEAYTNAVLDKFGMADARPTTSPSEAGPVSVLEDEVL FT SAEDTTYFRSATGSLLYLSRCTRPDITHSVMVLTRSMAKPGPRAMQKLKRV FT LRYLKGTISIGVRYGEDAGDGNVITAFVDSDFAGDLDKGYSTTGVVLYFAG FT GPVEWTSSKQTVVATSSVEAEFVALSKGCNIIKYFRHLLDTINQTQEEATV FT VWEDNSGALKLTRSFRITPRTKHIDVKFHHVRSLVADGVVDVKQISTSLQK FT ADIFTKGLNPSEFLRARGMLLGV" XX SQ Sequence 4992 BP; 1218 A; 1327 C; 1456 G; 991 T; 0 other; ggttttgagc ctcgagttgc tcgagctagt acaccagagt cacaagcgtc ggtaagcatg 60 gctaccggct cgtcaggcga gatccgaaga ggattcgcca agttcagtgg tgacccaggc 120 gactacgtcg gctggcgaac tctgcagacc tccttattta tggaggacaa gctgcacaag 180 gttctgttgg gagtggagaa agcccctacg gatcctggac caagcgctac gccaaaccag 240 actttggcat accaaactgc cctggaagga taccaggaca agaacggaca gatctttacc 300 cggctgatgc tcgctacatc tgaaaccggg ggctaccaga gcgcggcctc acagactgtg 360 caggcatacg cgcctatcgg gtcttcctac aacggagacg gtcgtggagc attcctcgcc 420 ctggaacgaa agtaccaggc cgctggggta taccgtacgc aggagctgca cgagaagttc 480 atatctttgg cagttactgc ggaccacgac tttgatccgg ccaatgttat tcaagacatg 540 cgccggatct gcacggagct agccgtgtat aacgacacgg tggctgacca ccgaaagacg 600 ttcgctttcc tgaaagcact gccggacgac cactacaaag agttcaagac agggctgctg 660 tgcggccagg ctgctgggag cgtcttgtcc ttcgaggagg tcgccgaccg agccacttcg 720 ttccacgcga tgcacattcg tggtaaagtt gcctcgaaga acgcgtccgg aagcagcagc 780 cgtgcgctga ataccgtcac acacggtgga gcgcgttctt tccgtaaggg cggcggtcat 840 catggtcgtg gacgcgcgca gcgcggtgga cgcggacgtg gcagctggaa caactcgtcg 900 aaccgtaaca acgggtcgtc gagggggaac aacagcaacg accagaacca tggcggcgca 960 acttctggca acggagctgg tggtgcgtct tccgacaacc ggccctctgg acggccaaac 1020 cactcacagc aaagacgcgg gtacgacagg gacggcttat gcagttactg tcacaattct 1080 acggaacaca cctggacgaa ctgcccgctt cgcgcctcca atgccacgcg gttttcgaac 1140 cgtgaacaac agcaaccgca gcagcagcag caggtcaaca cgatcgcgga agccacgaca 1200 caggcgtggc tcacgcacgc gcgcgaggtc gacctcacgc tggaatcgtt cgagatcgcc 1260 ataggcgatc ccgagcaggt gccgtttgcg cctgctgcat cgacccctga ggaggcgtcc 1320 gatgtcaatg tagggcaggt gttggctgcg cctgccacag cttcgctacc attgttggaa 1380 cgtgctgtcc cattgcaggt gccgattgcg cctgccacag cagaggaaac cgaggagcct 1440 gctgcctcct acgagcagga aatggacccg cctgccgcga tacagcatga ggagctggtc 1500 gcgtacacca acgtttttcg tgcagtggac aagacagcgc ccgccgagca tacgagggtg 1560 ttcatcgaca ccgccgcttc gggacacatg gtaagcggcg agagcccagt ctcacaacat 1620 gtagtcgact tggttgactg cgacgtccgc atcaagggtt cgtgcggcac atccagcgcc 1680 accaagaaag gtacgctgaa gttcaaactc aagaatgaca aaggtcaacc cgtcccgata 1740 gaattggagg ttctgcttgt gcgggatctt ggagcaaaca cattttctgt cggagcgttg 1800 gatgagaagg gggtgaagac ggatctactt tcggcacctc cggccctgcg aagccggaac 1860 ctgtctttcc ccatatcaac agcagaggtg cctcgaatgt acgtcgtgaa tctcatcctg 1920 gacgacctga atctcgacct gcctagttct ccgctggttt tccgtgccga taccgatgcc 1980 ggtgtctggc accggaggat gggacattgc aatgcgcgcg ccctgaagca gctctcggat 2040 aaggaaggca ccggcatcaa gttcatcacc aacattcaac caggtgactg cgaagtgtgc 2100 gatgtatcca aaagcaagaa ggcgagtcac cccccggttg gccgcgcccg ttcactgacg 2160 cgaatgatgc ttatgcatct cgacctgtgg ggaaaacatg gtgtgccatc gtatagcgga 2220 tgtcagcata tcgtaatgtt caccgacgat aaatctcgca tgcggtgggg cattcccctg 2280 aagacaaagg atggagtgac tgacgcgctc gaaacactga ttaaagaagt cgccgatccc 2340 gagggcatct gcatcgggaa aatccattgc gatggcgcag ccgacttcaa gggtaggttc 2400 ttagcaatgt gtcggtcctt cgggatcgct gtggagacaa gccccccgta cgtccctcaa 2460 gggaatgctg tcgccgaacg cggtttcggg accgtcatcg gtgcagcacg tagtctcatg 2520 cttggagctc cgcacctacc gcgtcaactg tgggcggaag ccgtgaaggc cgccatttac 2580 atcaagaacc gcacacctac tgacgtcctg gacggcaaag caccacttga ggtttgggag 2640 gacaaaccac tcggcagctt gaagcacatg catgagtggg ggtctgtagc gtttaaacac 2700 gtagaagctc gctcgcgaaa cgataagttt tctgccaggg ccaagaagta ttacatggtg 2760 ggatacaata caaccagcaa gacgtggcgg ctatgggacc cggcggaacc actcaaaatt 2820 acaaactctg ctgaagtgtc attccgcgag gtagatgccc gcgacgtcgc ccgccccatg 2880 cacgggtctg acccatttcc cgaacaaggc cagattttcc agcccggcat catcactact 2940 ggggccgaga caaaagacga ggaaccagaa ctagcagaaa cgaacgacgg accggacgaa 3000 gaaccacccg cggtgcgcaa aagcggtcgt acgacaaggc cgcgggaccg tctgaacctg 3060 tttacgacgg agcaggtgtt cgaaacggaa tacgcgctgg tgatcggagg tgagatcggg 3120 aaccttggtc aagggatacc tggccaacta ggatacatgc ccgccgatcc accgaactac 3180 cgcgcagcgg tcaacggacc agatgctgtt ggatggatga aaagcatgga ggaggagaat 3240 cgctccttgc tagaccacga cgtttatgag tgggtcgatc ccccgtgcga tgctcaaatc 3300 atcccgtcaa aatacatcta caaatggaag tacaacgagg ccggcatcgc tgtgcgacag 3360 aaatcgagaa tcgtagtgca aggattttac gaagctgaga ccggaaccga caatgctgca 3420 ccggtagcgt ctctccaagc cgtccatctg atagttgcgc atgcagccaa gaatggactt 3480 gttcttcgcc aagccgacat caggacggcg ttcctccacg cgaggatgga accgagatcg 3540 aaaccagtgt acgtcattcc cccggaagga ttctcgtgcg acagcgggag agccaggcaa 3600 gtctggaagc tcagagcatg gctttacggg ttgcgttttt ccccaaaaag gctggtgggg 3660 cactctgcac gactttctcc tgaagatcgg atttgttgag agcaccgctg aaccgtgctt 3720 gtacatcctg gacgacggag atgtgctcct tctcgtttat gtggatgaca ttctgctgac 3780 cggggagggc gagaacaaag tgctgagcat agtcgatcag ctgaatgagc gtttcgaaac 3840 ggtggacctg ggaggagcca gattcctact cggtatggga atcaaccgag acagagccgc 3900 agggacgatt cttttggaac aggaagcgta taccaacgca gtgttggaca agttcggcat 3960 ggccgacgcg cgtccgacga catctccgtc tgaggctgga ccggtgtccg tcttggagga 4020 cgaggtgctg tcagcggagg ataccacata tttccgctcc gccacaggct cgcttctata 4080 tctcagcagg tgcacaaggc ccgacattac tcactccgta atggttctga cgcggagtat 4140 ggcgaaacca ggtccgaggg cgatgcagaa actcaaacgc gtactcaggt acctgaaagg 4200 tacgatatca atcggtgtac gctacggcga ggacgccgga gatggaaacg tcattacggc 4260 gtttgtcgac tcagattttg caggcgacct agacaagggc tactccacca cgggagtcgt 4320 gttgtacttc gctggtggac cggtggaatg gacatcatcc aagcagacgg tggtggcgac 4380 ctcttccgtt gaagcagagt tcgtggcttt gtcgaagggg tgcaacatca tcaagtactt 4440 ccgccacctg ctggacacca taaatcagac tcaggaagaa gcaaccgtgg tgtgggagga 4500 caactcggga gctctaaaat taactcgtag cttccgtatc accccaagga cgaagcacat 4560 tgacgtaaag tttcaccacg taaggtcgct ggtagctgat ggagtcgtag acgtgaagca 4620 aatatcgacg tcgcttcaga aagcggacat ttttacgaaa gggctaaacc cgtcggagtt 4680 tctccgcgcc cgtggcatgc tgttaggagt ttgatcacct cccctcttct tcgtaatcag 4740 actttatgtc ttgagggttg gatggtgtat gtgtgtgtat atgttagaag aaaattcggg 4800 agatttgtgt cgaaggaaaa taaatcgctg ctgatgcaac gcagctgagg aaggcaaaac 4860 aattgatatt gagacagaag ttcttaagat agcattgttt cgagaggaca tggatattgt 4920 tttcgagagg acattgagag agaattggat ctgatgcata ggtactagaa tgacgtagtt 4980 cttgagagga ca 4992 // ID TSK1_LTR repbase; DNA; PLN; 322 BP. XX AC AF492702; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces kluyveri retrotransposon TSK1_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TSK1_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Lachancea kluyveri OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Lachancea. XX RN [1] RP 1-322 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AF492702; Positions 1 322. XX SQ Sequence 322 BP; 123 A; 53 C; 55 G; 91 T; 0 other; tgttggaacg aaatacaact atcgaccatc gactagtatt cgtgttacta gtatattatc 60 acacacggtg ttataaggtg acataaagaa tgagaaacag tcatctaaat tagtggaagc 120 tgaaacgcaa ggattgataa tgtaatagga taatgaacca gaaacatata aaaggaagaa 180 tatttgtata tagagttatc gactcccttt tctggattcc tagaaagatg aggagaactt 240 ctagtataac catataccaa ttattatagc cttaatcaaa aatggaatca caacaattgt 300 cccagtattc acccatttct ca 322 // ID Gypsy3-LTR_VC repbase; DNA; PLN; 198 BP. XX AC scaffold_128; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-VC; KW Gypsy3-I_VC; Gypsy3-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-198 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 131-131 (2008). XX DR Genome; scaffold_128; Positions 111609 111806. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 198 BP; 45 A; 51 C; 42 G; 60 T; 0 other; tgtaacgtgc aagagcagtt acataactct caatgcttct cttcaacggg gttcactcag 60 ctattctcaa gatcttcctt ttgcgacgtc gtacattagt gcgggtcgta cactggatgg 120 ctacaccttc tctggtgtaa tcgcatccgg tgtctttcga caccaccatg actggttgtg 180 ataagcctta acgtaaca 198 // ID Gypsy-34_PIT-I repbase; DNA; PLN; 7525 BP. XX AC AATU01000764; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_PIT_; KW Gypsy-34_PIT-LTR; Gypsy-34_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7525 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000764; Positions 52177 59701. XX CC Positions [6227-6739] - Integrase core CC 'GACT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 72..1865 FT /product="Gypsy-34_PIT-I_3p" FT /translation="MAVRMAVARAKTKTGTQKVARVKARTSPRTGRSAGKN FT LEETKSDDAPNDGENNENETTDLQPAVSSEATTAKRTAASMVETADESEGA FT TLQRGSNDGGERPPTDRQASAVTTETSVSKVAVAGDAAADAGGVGDGQAVP FT QADVTAMAAAIDELRTMVQNLHAVPADAEDEHEPERGHGRRHYARYRSGDA FT FGRRRSSGRPRPSRRHSSDSDRSSDEDERRRRTTSRRSASPSRPPDGDDSG FT DGSDDDVASEGSSSESSFEEKSSSSGDSSDADNGDSEANSESDRSHRSGRR FT GQRERRERHGRREIQDEQPRRKSVKGLELPTFTPSPKVSVSTWIDRVDLAL FT KGAKESGRGKWTDPALYFIMGNKLMENAARWWVNMDRQLPESKRRWTYLKK FT ALLRRYGERLDMSAAEWRVNSRRMWPGETYADYAAVLREVVGKNRVSERVL FT LAQIYRCLDKTARKLVQQKPKPKTLEKAVAKATKIDDPMENVALGITNIGQ FT AWATAPSPYLIPMAGTMGQSMVIPGVGSAGLSSGMASRAGHTNAADGEAGS FT MALFTNPQGVWSDYSGTWDVPPGHVWNGKCWVETKSSRKQSQGQQQSNRNT FT " FT CDS 5981..7030 FT /product="Gypsy-34_PIT-I_2p" FT /translation="MKTEIRHGRVLVRTAQGLRVLLPLELWSVALKEHHDS FT VWAGHLRAPHTYERIAQRYWWPDLRREVKRWVRGCQECGSRKAKPREVIPP FT LRSIRGGDVGDPWALDVTGPLPVAGGDKRYVIAAVEYVTRYAVAKAVKRHT FT AENVARFLMEEIVLRFGSFRELLTDGAPELTGQVTERLVVLLQAQHRNPVP FT YRPLMIGLVERFHRTWKDCVSTYMQADAQDEGATWVSFAVYAYNAGRHSTL FT ALYPNELMMGRRLRSPNDLLSESGVTEAGGLTGYHRRLFAAMRSSYGVAER FT ARRYEQLRQARYYNHEVRNRREFVVGDSAWMYRPPRGPKATKFVHQWVGPM FT KIIEPVG" FT CDS 2906..4672 FT /product="Gypsy-34_PIT-I_1p" FT /translation="MQALSDRRVSRGDDVRGRADKKTARVSLVQQRRSSDE FT ESKTESEDVEFVGADDGLPTTNMEVDGEQRGVKLDSGARYTVAGTEWMKFG FT DQVQQDAPVDYVEGIGGFLLIVIGVWRFDMRNVFGEVITVDACIISGCTDE FT FLLGVDFMRSHGATMDFCDNEVRYRENGRLVVIPFKTYDKSGGAKVAAVRM FT ARRTPLGGSTVTPVKVAMTAEDGERGIFVPTHHTGSVILAATVTHVQNGKA FT WVPAINSGNDEVKLPSKKQLGTWIPLDESMTVIEVNGGLQRERLRAWLREL FT GDVDVPLANEDEVKIGEDDAENRQLILNLLRAYRKTTESTGDCPPATTLSI FT EHHVDTGDAAPIMLNRRRMAQVDVPIVESNVKKMLSAGVIKEGDGAWGFPV FT VLVRKKDGEVRFCIDYRALNKITKKDGYPLPRIDETLEALGGAVLLTTLDQ FT KAGYWQTRVAEADQAKTAFTTKQGLYQFVRMPFGLTSDPSTIQRMMNMVLR FT GLTWLTCLVYLDDIVSFTRGDIERHVVEVACVLERLEAAGLTLKLKKCVFA FT TRKMEYLGHALSSDGVRPLERLITAVRSQAVRSLGWILLTLH" XX SQ Sequence 7525 BP; 1939 A; 1678 C; 2617 G; 1291 T; 0 other; tggtggtcat acaggggccg tggagaaagc aacaacaatg taagagtgat caacaaggtg 60 ttcgaacgag gatggcggtg aggatggcgg ttgcgcgagc aaagacgaag actgggacgc 120 agaaagttgc tcgtgtcaag gcgagaactt cgccgaggac tggacgatcg gcgggcaaga 180 acctagaaga gacgaagagt gacgacgctc caaatgatgg agaaaacaac gagaacgaga 240 cgacagatct gcaaccagca gtatcgtcgg aggctacgac ggcgaaacgc actgcggcct 300 ctatggtaga gacggcggac gaatcagagg gagctacgct gcagcgcggg agcaacgatg 360 gcggtgaacg accaccaacg gaccggcaag catctgcagt gaccacggag acgagtgtta 420 gcaaggtagc ggtggccgga gacgctgcag cggatgctgg tggcgttggt gacggtcaag 480 cggttcctca agcggacgta acggcgatgg cagcggccat cgacgaactt cgtacgatgg 540 tgcagaacct tcacgctgta ccagctgacg ctgaggacga gcatgaacct gaacgcggac 600 acggaagacg acattatgca cgataccgga gtggcgacgc atttggacgg cgacgtagct 660 ctggacgccc gcgaccatcg cgacggcaca gcagcgacag tgatcgttca agcgatgaag 720 atgaacggcg acggcgtaca acgtcacgga ggtcggcgag cccctcacgg ccacctgacg 780 gagatgacag cggcgatggg agtgatgacg atgtggcttc ggagggttcg tctagtgaga 840 gcagcttcga ggagaagagc agttcaagcg gcgacagcag cgatgctgac aacggagata 900 gcgaggcgaa cagtgagtcc gatcgatcgc accgcagtgg acggcgagga caacgagagc 960 gacgtgagcg gcacggaaga cgagaaatac aagatgagca gccgcgacga aagagcgtga 1020 aggggttgga gcttcccacg ttcacgccgt caccaaaggt gtctgtgtca acttggatcg 1080 accgagttga tctggccctc aaaggagcta aagagtctgg acgaggaaag tggacggacc 1140 ccgcgctcta cttcatcatg gggaacaaac tgatggagaa tgcagcacgt tggtgggtca 1200 atatggatcg acagctacca gaaagcaagc gacggtggac ttacctgaag aaagcgctgc 1260 tgcggcgtta tggtgagcga cttgacatgt cagcagcgga atggcgtgtc aacagcagga 1320 ggatgtggcc gggagagacg tacgccgatt atgcggcggt actccgggaa gtggtcggca 1380 agaaccgagt aagcgagcgc gtcttactag ctcaaattta caggtgcctt gataagactg 1440 caaggaagtt ggtgcagcag aaaccaaaac cgaagacatt ggagaaagct gtagccaagg 1500 ctacgaagat agatgatcct atggagaatg tggcgttagg gataacaaac atcgggcagg 1560 cgtgggcaac tgcacccagt ccatacctga tccccatggc agggacgatg ggtcagtcca 1620 tggtgattcc gggcgtcggc agtgcaggac tgtcgtccgg tatggcgtcg agggcgggac 1680 acaccaacgc ggcagatggc gaggcaggga gcatggcgct ctttacgaat ccgcaggggg 1740 tctggagcga ctactctggg acttgggacg tgcctcctgg ccacgtctgg aatgggaagt 1800 gctgggtcga gacgaagagt agtcggaagc aatcgcaggg acaacagcag tcaaaccgga 1860 acacataacg gaaggagcga cggcagccag attccagcgg tgacgagtcg gatgcgaagc 1920 ctccgcgcaa gaagccaaaa gcggcggtga agcagacgaa gggcctgtcg agtccagaac 1980 cggcggctcg acagcacgag ccaccgacgt gctttagctg tggcgaagtg gggcatatgt 2040 cgtcaaggtg tcctacgggt ccgaagtgct ttgcatgcaa caagtacggc cacattgcgc 2100 gtgactgcgg caatcgaaat gcggatccga aagattccac cgacaaggag gcgaagaagc 2160 ggaacgacga gtacatgagg aaccgcgaag agaagccgaa gccggcggaa aactaggcgc 2220 gggcgcagtg aggggactac agcgtccgcc acccactagg gatccccagc gagaggtgca 2280 gtccaagatg agtgcgacga cagaggtgaa cgggacgcgt acggcggtat tgacgacgtc 2340 ggggacggat gagacgagtg cgatggtaac ggcggcgacg ccgaaagagg aagagacgag 2400 cgtgacgtcg gtggcgacgc tggcaacgga cgagaataat gcaaggaaag gaagagttgc 2460 tactgtgcga acggtagtgg cacacatgaa ggacgacgag gagacgcgag acaccgagcg 2520 tgcccagacg tacctgacca cggtgcgacc tgaaatggcg ttggatcggt ttgtacgtgt 2580 acttgaagtt agtaaagatg agaaaacgca gaaaagcgca agtgaacgac gatggtctgg 2640 agaaggcgag cgacgtcggc ctggggaagg cgtggacgcg agcgagatcg cgtgggtaat 2700 gacggtaccg gtggtgtcgg acgacgaggg agacgacgtc acacgggaac gaagagcaag 2760 acgaaaggcg cgtaaggcgg ctaaacgctt gcaagtcaaa tgagctgccg aacggccacg 2820 cagtcagaaa tgtgacgcca acgagggact gaagtgcgcg tctgacgaac gcagagcggc 2880 acaaattcgg gacgagaagt gcgccatgca ggcactcagt gatagacggg tatctcgtgg 2940 ggatgacgta cgcggtcggg ctgacaagaa aacagcgcgc gtgagcttgg tgcagcaacg 3000 aaggtcgagc gatgaagaga gcaagaccga gtcggaagac gtggagtttg ttggcgcaga 3060 cgatggactg cccacaacga acatggaggt tgacggcgag caaaggggcg tgaagctgga 3120 tagtggagcg aggtatacag tcgccggtac ggaatggatg aagttcggag atcaggtgca 3180 gcaggatgca cccgtcgact atgtggaggg cattggcggc ttcttattaa ttgtgattgg 3240 tgtatggcgc tttgacatgc gcaacgtgtt cggggaagta atcactgtgg acgcgtgcat 3300 catatcgggc tgtacggacg agttcctact gggtgttgac ttcatgcgga gccatggggc 3360 tacgatggac ttttgcgaca atgaagtacg gtatcgcgag aacggcagac tggtggttat 3420 cccattcaaa acttacgaca agagcggtgg ggccaaggtt gcagcggtac ggatggcacg 3480 gcggacgcca ttgggcggaa gtacggtcac tccggtcaaa gtagcgatga cggcggagga 3540 cggtgagcgt ggtatcttcg tgcccacgca tcacactggc tcagtaattc tagcagcaac 3600 ggtaacgcac gtgcagaacg gaaaggcgtg ggttccggct atcaactctg gtaatgatga 3660 agtgaagttg ccttcgaaga agcagttagg aacgtggatt ccgttagacg agagtatgac 3720 ggtgatagaa gttaatggtg gtctgcagcg ggaacgacta cgcgcttggt tgcgagaact 3780 gggcgacgtt gatgtgccat tagctaacga agacgaggtg aaaattggcg aagacgatgc 3840 ggaaaatcgg cagttgatac taaatttact gagggcgtac cggaaaacga ccgagagtac 3900 gggagattgc ccaccggcaa ctacgttgag catcgagcac catgtcgaca ctggagatgc 3960 agctccgatc atgctaaatc gacgacgaat ggcgcaagtg gatgttccaa ttgtggagtc 4020 gaacgtgaag aagatgttga gtgcgggcgt cattaaggag ggtgacggcg cgtggggttt 4080 tcctgttgtt ctggtccgca agaaggacgg agaagtgcgg ttctgcattg attaccgtgc 4140 gctcaacaag atcaccaaga aggacgggta ccctcttcca aggatcgacg agacgttgga 4200 agctcttgga ggtgcggtac tgctcacgac gttagaccag aaggcgggct attggcagac 4260 tcgagttgcg gaggccgacc aagcgaagac ggctttcacg acgaaacagg gcctgtacca 4320 gtttgtcagg atgccgttcg ggctaacgag cgatccttca acgattcaac ggatgatgaa 4380 catggttttg cgaggactta cgtggctgac ttgtttggtt tatctggatg atatcgtgag 4440 ttttacacgc ggcgacatcg aacgacatgt ggttgaagtg gcatgcgtgc tcgagcgact 4500 agaggcggca ggattgacgc tgaagctcaa gaagtgcgta tttgcaacac gtaagatgga 4560 atacttgggg catgcgttga gttccgatgg tgtacggccc ttggagcgac taattacggc 4620 ggtgcgaagt caagcggttc gttcacttgg ctggatatta ttgacgcttc attaaaggat 4680 ttggtgccct tatggcgcct atgacaaagc ttttacgtaa ggaggctgag tgggaatgga 4740 cggagacgca ggaagcggcg tttaagcacg tgaagacggt tctcacgagt aagctgttgc 4800 tcatttacgc gaacttcagg ctaccattcc gcttagtgac tgatgcgagt aaggtgggtc 4860 ttggtgcctg cttgatgcag gaccatgaca agggctggcc gtcggcgtcg atcgagaaga 4920 cgtagggcgg atggaagcgt ggcggaagtg acgagtagta cggtagctga cgaagcaata 4980 attcagacaa cggacggcac gatggcgact acgacagaca ttgaggctgc gacagaaacg 5040 atggtgaccc gcacgccggg tgataaagac gacgacgatt cgggcctggt ggcagcaacc 5100 cgagctgacg cagttttgga cgaacaagtg actcctacgg cggagacgca cgagctagag 5160 acgtggacgg ctagggcaga tgagcatgtg acggcggtag cgaaaaatga ggacgtggtg 5220 gtggcggtaa cggcggtgga ctcggcgaca ggtgcgcgac agcctgtgcg agtaacggga 5280 tccaagctgg ggaaggcgcg tggcacgggc ggcacgtcca ttcactagag cggctaggcg 5340 gcaactggag gcagcgcagc ggttggcgga gactcaacaa tcagaagcac cgggtcggga 5400 cgcagaagac gtaacagcag ctgatgccgg tgccaccagg ccagaacctg tgggtagaca 5460 gcttacaggt ggtggtgtgg cggcaaggtc ggcgacggag ccgacaacgg tgaggacgaa 5520 ggaaggcgag agacaactgg acggacacga agaactgaac gacgcggagg aggctcgact 5580 gcacgagggt gtggtgtcga ggctgccagc aattgcagcg acgcgaggag cgaatggggc 5640 ggcacgacga gccggtgaag cagatagtgg tggcggtcta gcagtgcgac caaagcgaca 5700 ccacgtacgg ctccagctga cggcggatca ggaacgagcg gcagcggcaa agagtagcag 5760 tgatacggag gagcctgtgt tccccatacg tggacctgac ggagtgcaga gtgcacaata 5820 gtggctgaac gctgcgtcag cggcgttgaa gacacggaaa cggggtcaag cgggcgagca 5880 agaaccacag atgctacaga tgacggatgg ggtgatcatc aaggcacagc aacggagccg 5940 gctagtgcaa cgagcggtgg aggtgggtga ctactgaggc atgaagacgg agattcgaca 6000 cgggcgagta ttggtgcgga cggcgcaagg actacgggta ttgctgcctc tggagttgtg 6060 gtccgtagcg ctcaaagagc atcacgattc agtgtgggct ggccacttac gggcgccgca 6120 cacttacgag agaatcgcac aacggtattg gtggccggac ttacgacgcg aggtgaaacg 6180 ctgggtgcgc ggatgccaag aatgtggcag tcgcaaggcc aagccccgag aagttattcc 6240 accactacgc agtattcggg gcggtgacgt tggagatccc tgggcgcttg atgtgacagg 6300 gccgctacct gtcgctggag gcgacaaacg atacgtgatc gcggccgtcg agtatgtgac 6360 tcgatacgca gtagctaagg cggtcaaacg gcatacggcg gagaatgtgg cacggtttct 6420 tatggaagaa attgtgctga gatttggtag ctttcgcgag ctattgacgg atggagctcc 6480 cgagctcacg gggcaagtga ctgagcggct tgtagtgctg ctgcaagcac aacataggaa 6540 tcctgtgccc tacagacctt taatgatcgg tttagtggag aggtttcatc gtacgtggaa 6600 agattgcgtc tctacgtaca tgcaggcaga cgcgcaggac gaaggggcga cttgggtgtc 6660 cttcgcagtg tacgcataca acgcagggcg gcactcgacg ttggcgttat atccaaatga 6720 gctgatgatg ggaagacgat tacgaagtcc gaacgacttg ctaagtgaga gcggcgtgac 6780 ggaagccggc gggttgacgg gctaccatcg ccgattgttt gcagccatgc gaagtagtta 6840 cggggtggca gagcgtgcac gacggtatga acagctacgt caggcccggt attataacca 6900 cgaagtaagg aatcggcggg agtttgtggt aggcgatagc gcgtggatgt acaggccacc 6960 aagaggacct aaagcaacca agttcgtgca tcaatgggta gggccgatga agattatcga 7020 gccagtgggg taggataatt tcttaatgga gcgcgaggat cagaacggat tgcctgagcg 7080 gtttattgcg cacgtgtcgt ttctgatcac gtacaattac ccagcggact tgttaaagcg 7140 agcggcggca gacatcgcag agcaactcga gtatgaagac cagaacacgg aagaaggtga 7200 tgtcgaggca acaggaacgg cttctcgagc aacgacggca tctgtacatg ccgcaacggg 7260 tgggaacagt aagaagcgta aggcgagaac gacagatgga gagcctgtgt ggagaagcac 7320 gagtggcctc ctggtggaag tacgacgacg aagacgaagg aacaaggcag gacactacgt 7380 acttgagtac gcactgtagc cggaagaacg gggacagcga gtattggcag acgatgaact 7440 gtactgggtc tcaagtgtgg agtacgacga gttattcact gccggcagag tcgtggaaga 7500 ctctggggtg gaggaaggcg tgtac 7525 // ID Copia-13_PSo-I repbase; DNA; PLN; 5718 BP. XX AC AAQY01000898; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-13_PSo_; KW Copia-13_PSo-LTR; Copia-13_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5718 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000898; Positions 46908 41191. XX CC Positions [3015-3524] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2799..3719 FT /product="Copia-13_PSo-I_2p" FT /translation="MSAVMSPAVEDDVERGSLMYFHERFGHLALDTVERIA FT RDPHSGIYLTDHTRKRCVVCAEGKQSKRRQSKADSGENAPTERVGGVICSD FT LKGPLTPRDRHGNHYLVNFIDHRSNYCRVFAAKTKDEAARKFRDFLTFFEK FT RFSCKIHVLRTDGGGEYRTVDLFCKDEGVSRQVSEASNQASNGKAERMHRT FT IFNMVRCMIFDSALPTSFWSDAAEYATYILNRSSSRSNEDRKSPLEVITGK FT SPGLRDVVAFGASCTVRRDPKKKPLQKRAVVGRVIGKDSETKGYRVYLPTE FT HVVVVSRSTKTAQFT" FT CDS 3902..5608 FT /product="Copia-13_PSo-I_1p" FT /translation="MSAQSASGGGSNCSSSPDAPVNTAFAASESLPDPKNC FT QEAHRSADAAQWTAAELEELAALIANATWTLIKCEPNTPKLHAKWVYKKKR FT DSSGAVERYKARLVACGNEQVLGVNYTLTFAAVLEMTSGKVIFALARIWGV FT RACHGDVPNAYVKAMTEDGIEIVLVIPKGMDISKETLAELGANDVKELGLR FT LDRSLYGLKQAGRQWHQLLHRTLLQNGFTQCVTDSCLYFKADRSGTTLVGT FT YVDDLLVTGTSTERVDAFFADIQVLSLKDLGPATMFLGVNIEYDDKSGYPF FT GQKHAIEELLQKHGLAQAHPARCPIGEDQNVPITTDELLPESPTRSDPSVP FT TIKMFQSLVGALLWIARCTRPDIGFAVHRATRRTHAPTLQDWKLDKRIARY FT LAGTLDLRFHMVKDHPTTSAIELVCYTDADFGGDRVDRKSVSGAVLCMNGM FT VVGLMCKKQSSVALSTAEAEFVAASAGGQELLGLKELLGELGAEVQLPTKL FT LMDNQAAILQVKNEASSGRVKHIDIRIKFLRDYAAKGLVEPQYIGTHDMIA FT DILTKALPAPRILALRAACGLW" XX SQ Sequence 5718 BP; 1278 A; 1618 C; 1688 G; 1134 T; 0 other; ggttatgatc ccaagtgacc gcaacgacca gcccgtggct gcgcaagagc cccatgctgg 60 acctcctgct cgcgaaagga gcggagacgt tcaaggagaa tctgcaagtc aaatcgacgc 120 cacggctgct cttctcgacg cgatcaagtt gctcacgaat cgcatcgatg tgatcgagcg 180 cgccgtgacg cctagtgcgt tgcgccaagg tgcagtctcg ccagagcaac cccagcggtg 240 tggaagcatt ttccctcagg ctatcgagca tggcagcatg ggcatgcagc gcatgcaact 300 ggacgagctc gcggatggcc agagaggtgt gcagactcct ggtgcatttg tacgcggcag 360 cttctacgga ggggtaccgc aaccccagta ccaagtgcac cgcccccctc cagagcagcc 420 tcaataccaa gaacaccgac cacctccagt gcagactggt gagcaagaag gaggtggcag 480 gttgctgtgg tgtaacggga tcggccaaaa tctggttaag gcctgatcaa gcttcccacc 540 aaccagcacc cagacaccga ctaacggagg gggcccccca acgatccgtg atcggctaaa 600 cttgttctca ccttgtgtac ccgtcggcag actggatcgg ctctctcggg gctccgaaga 660 tgcagcgctt ggtgaagatc gagtgtcttg gcgtgacgcg gggatagttt gtagagcagc 720 gcggtagtct tcgctctgcg tccgagtata cgctccgatc gagggttgtt cgctgcgatc 780 ggtcggcctg gagttgatcc aaggcctgtg gttgactttc cgggtgtgtt ccttcctttc 840 ctgagttgct tgtcgcttcc tatagcgaga tcgaggttga tcgagaggag aaacgatcgt 900 cggccaagca ccaatacccg gtcgatcgag gacttgcaca caagagatag atcactagag 960 taggtcaagc tggccaatgt attaatccag tcttaaccgt accgctagtt cactacccaa 1020 agtgtcgacg ctgccgaggc caatgtagtt cctgggactt ggtgacttga tgggacttgt 1080 ggtcttcggt gcaaattctc ttctgattta tgtttagctg gtctctccct aatgctacca 1140 tcttgcttac cctcctacaa ccacacgatt actggattct tgccccgact tcgtcctcca 1200 tgtgcgtccc atcctgctcg atccacgatc ggccccgatc ggcgatcgac tccgatcggc 1260 cccaatcggc gatccgcggt cgatctcgat cggcgatcca ctcccgatcg atgacttatg 1320 ccagttgcca tgcgccgccg atctatcacc ttctgtcctc ggtcatttca gatccgcggg 1380 ttctgtcgtc gatctggact tgggtcggcc acgaatcacg ccgcggttcg ggcacgatca 1440 cccacaatcc ggcttgccac atgtcctgcc ttacgcgccg gcgtcatcgg accacctaag 1500 atctcccgaa gaactccttc tgatccgtag atccttgctg cctgtctctc gatcgccgat 1560 ctcccacgcc tccagtcgat cggccctgcc gcctttctcg gagaacaatt cttattcagc 1620 acttctccac aatgccgccc acccaagcac cgcagtgcgc aggaggtgag caacctcgcg 1680 ctggtggtga taatccgaca tatggttatc ctagttatgg ccagtcgaag ctcagcatcc 1740 gagacttcga cgggaaggaa acgtacatgg ggctcggcgc aggattcgag caatagggac 1800 ttatgtttat tggccaagtc gacatggctg agagggcctg cggctttcgc tggccagagg 1860 aggtgaagct gaacaagcta gggcagcacc ttgtcgggaa gcctggaagg ttcttccgtg 1920 agcaggcgaa cacgtggtgg acgatctgcc cgttcctgtt ctacgcattg gagcagatga 1980 acgcgaagtt catggtacgc ttgtccatgc aaaacgcggc cgtaatgttc acggcgccca 2040 aggactcggg ccggtcgtgg aacgaccact ttctctatct gactgctctg atgcgagcaa 2100 cggacgcttc gccggcgatg gtcctgcaga acatcattcg ccacgcgtcg ccgagattca 2160 gcccgaccct gcttggaagg tacgatgaga ctcggccgga cctgatgctg catgctcaag 2220 agttagtgca gtttgcgcaa cgttttgata cggacgccat gaaccagaag gaagccggga 2280 aggtgctaca actgcgggaa gactgggcac attgcccgca tgtgcccaca cccaaagcgt 2340 caaaagaaga ctgaaggggg gaagccgaag ggctgggcgc tcgcagccac tggaggccca 2400 agcaaggacg agggctggat cgtggacagc ggagcgatgt gaatgatgcg agcgtgctgc 2460 gcgacgcgaa ggactgcgcc gggaccgagc cgctcacgca gccagacgga aatgggctgc 2520 aggttacgaa agtcgggaca gtcatatttc gtggaggaga cagcgatgct gccgctctca 2580 ttaccgtcag caatgtctac cacgcgccaa cgctcactcg caatttactg tctttgggac 2640 aactggccaa gcgtggatgt gctctggcag agaaggacgg gagcctcgtg atcgccaccg 2700 gtggcgaaac ggtcttccga gtacggttta agcacgacgt cctgatcgct gacttggccg 2760 cagttcggcc aacgccgcac gcaggcatcg ccttggcgat gagcgcagtg atgtcgccgg 2820 cggtagagga cgacgtggag cgtggatcgc tcatgtattt ccacgagcgt ttcggccatt 2880 tggcgctgga cacggtggag aggatcgccc gtgacccaca ctccggaata tatctcactg 2940 accacacgag gaagaggtgt gtggtctgtg cggaggggaa gcaatcgaag cggcgccagt 3000 cgaaggcgga cagcggggag aacgcgccaa ccgagcgcgt cggaggcgtc atctgcagcg 3060 acttgaaggg cccgctgaca ccgagggacc gacacggcaa tcactacttg gttaacttta 3120 ttgaccaccg cagcaactac tgccgcgtgt ttgcggccaa gaccaaggat gaggctgcga 3180 ggaagtttcg cgactttcta actttctttg agaagcgatt ctcttgtaag atccatgtcc 3240 tgcggaccga cggaggagga gagtacagaa cggtcgacct gttctgcaag gacgaaggcg 3300 tctcccgaca agtgagcgag gcctccaatc aagcctcgaa cggcaaagca gaacgcatgc 3360 atcgtaccat cttcaatatg gtgcggtgca tgatctttga ttcggccctg ccaacaagtt 3420 tctggagtga cgcggctgaa tacgctacgt atatcctgaa tcgtagctca tcaaggtcaa 3480 acgaagaccg aaagtcgccg ctcgaggtta tcaccggcaa atcacctgga cttcgtgatg 3540 tggtggcgtt tggagcgtcg tgcacggtgc ggcgggatcc aaagaagaag ccactacaga 3600 agcgcgcggt ggttgggcga gtcattggca aagacagtga gacaaaggga taccgcgtgt 3660 atctgccaac tgagcacgtc gtcgtcgtat cgcgcagcac gaagaccgcc caattcacgt 3720 aattgacgcc aaggaggcat ctgccgcgac gagcctaccg ggacctgtga agccagcact 3780 gcctgcaaag aacccaccgc cggtgccgga agcagcgaag cccgcgcaac gacgctcaac 3840 taggaagcgt cgcaagtctc ggaagcagcg cgaagctgac gacgcgaaag gaggaccatg 3900 catgtctgcc cagtcagcgt ctggaggagg ctcgaattgc tcaagcagcc ctgacgcacc 3960 ggtcaatacc gcattcgctg ctagcgagtc cttgccggac cctaagaact gccaggaagc 4020 tcatcggagc gcggatgcag cacaatggac agccgccgaa ctggaggagc tcgcggcgtt 4080 gatcgccaac gcaacgtgga cgctaatcaa gtgcgaacct aacacgccga agcttcacgc 4140 aaaatgggtg tataagaaga aacgggactc gagcggggct gtcgagcgct acaaagctcg 4200 cctcgtggct tgcgggaatg aacaagtact cggcgtcaac tatactctga ccttcgcagc 4260 cgtccttgag atgaccagtg gcaaagtgat tttcgcgctc gccaggatct ggggggtacg 4320 agcgtgccac ggggatgttc ctaacgccta tgtgaaggcg atgacggaag atggcattga 4380 gatcgtgctt gtgatcccga aaggcatgga catcagcaag gaaacgctcg ccgaactcgg 4440 ggctaacgac gtgaaagagc tgggactgcg ccttgaccgc agcctctacg gactaaaaca 4500 agcaggaaga cagtggcatc agttactgca ccggacactg cttcaaaacg ggttcacgca 4560 gtgcgtcacg gacagctgcc tgtacttcaa ggcggaccgc tccggcacaa cactcgtggg 4620 gacgtatgtc gacgatcttc tcgtgacagg gacgtcgacg gagcgtgtgg acgcattctt 4680 cgcggacata caagtgctct ccctaaaaga cttagggccg gcgacgatgt ttctcggtgt 4740 gaacattgag tacgacgaca agtcgggcta tccgtttgga caaaagcacg caatcgaaga 4800 actgctgcag aagcatggac tagctcaagc tcacccagcc cggtgcccga ttggagaaga 4860 ccagaatgta cccatcacta cggacgagct gctccccgag tcgcctacac gctcggaccc 4920 gtcggtgccg acgatcaaga tgttccagtc gttggtcgga gcgctactct ggatcgcgag 4980 atgcacgcgc cccgacatcg gctttgcagt tcaccgtgca acgcggcgca ctcatgcacc 5040 caccttgcag gattggaaat tggacaagcg gatcgcgcga tacctggctg gcaccttgga 5100 tttaagattc cacatggtca aggatcaccc gaccacttcg gcgatcgagc tggtgtgtta 5160 cacggatgct gattttggcg gcgacagggt ggaccgaaag tcggtcagtg gtgcagttct 5220 ctgtatgaat ggcatggtcg tggggttgat gtgcaagaaa caaagctccg tcgctctttc 5280 tacggcagaa gctgaattcg tggctgcatc agcaggtggg caggagctgt tgggcctgaa 5340 ggaacttcta ggtgagcttg gcgctgaggt ccagcttccg accaagcttc tcatggacaa 5400 tcaagccgcg atactacaag tcaagaatga agcaagctct ggccgtgtta agcatatcga 5460 catccggatc aagtttctcc gcgattatgc tgcaaaaggc ctcgtcgaac cccagtacat 5520 cggcactcac gacatgatcg ccgatatcct cactaaagct ctgcctgcgc ctcgtattct 5580 ggcgcttcgc gctgcgtgcg gattgtggta accccaccgg catcggggag gagtgttgga 5640 aggagctgat accgctggct caactgagcg acaacgccgc atcgcgctgt cagcgcctca 5700 caacgctgca tcgtgctt 5718 // ID TY1C repbase; DNA; PLN; 114 BP. XX AC M25056; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE S.cerevisiae Ty1 transposable element D15 DNA, segment 2. XX KW Copia; LTR Retrotransposon; Transposable Element; TY1C; KW Ty1 transposon; mobile element. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-114 RA Eibel H., Gafner J., Stotz A. and Philippsen P.; RT "Characterization of the yeast mobile element Ty1."; RL Cold Spring Harb. Symp. Quant. Biol 45, 609-617 (1981). XX DR GenBank; M25056; Positions 1 114. XX SQ Sequence 114 BP; 39 A; 12 C; 16 G; 47 T; 0 other; attttactgt atacttcatt aatatttggg aaatagacat attttgagat tattttttag 60 atcctgttta cgtaaaagac aataatatag gtgtgtaaat tataccctaa gttc 114 // ID Gypsy-17_PSo-I repbase; DNA; PLN; 4645 BP. XX AC AAQY01000206; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PSo_; KW Gypsy-17_PSo-LTR; Gypsy-17_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4645 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000206; Positions 14320 9676. XX CC Positions [3554-3937] - Integrase core CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 382..3006 FT /product="Gypsy-17_PSo-I_1p" FT /translation="MDKIKERVAEVMNWYIPDIFDFFKTHLRMDLKEQDVE FT ARVAKYFVDFDQFIEEHGFASMLAAGGTDRPDYRDRMKNRCKLIVENLSPA FT MLKTEIKRLVSLQHREAKTDNIALHQLILTRAKMQQRYHLMKREEKADRKQ FT PLKPDGGRATPKPDNRKAEPKLETSRSPSSRPGVNNSAKTHQAPPKDGCLY FT CKGPHLVRFCPTATEEQKQQCYQRLRESKVAKVKAARVRRIPGHHQVVVND FT LVELPYRADTGSEVNVLSASAVRDLAACGSPVVTTAMEMPVFLERVGGDLL FT ACNTCCDVDVVLSTAAGPVHLRRVHCVILDDDEELGNPALVSLGIDVDRQM FT EQLASGGGLDGDDGDDIRGDPEIGRDSDAEMTEFVNGLLNTAGANGFPEEE FT MPALRRIVLDYKDMWRSRLGADEPARVKPYRVTLEEGAQPIRCKPRRYSPF FT ASSYTSNYMRGLVASGYAYPNNGSRWSSAVVPVQKAGGEEFRVTSDYRRLN FT SITVPIAASVPNLSVVLSRVKGAKVIGKLFNMFKGFWQLPLHEDSREYFSI FT QTDEGVFTPTRVPQGGVDSALHFQSTMQEAFADLINDHLLVYVDDVILFAS FT TFEEYLEVLEKFFARLQELNLKLNVTKSCLYQQEVTWCGKIIDGNGVTHDP FT ARVESLVSLPLPLNAAELQRFLCAANWLRDSVVDYGRAVAPLQAKFDAAMQ FT GLSRRKRQAAGVEISWSEDEVEQYKAFLKRLASSAALSFPDDDAVVCLSSD FT ASASGWAVILTQVKDWKDGVPIHEQSHELLVCKGGSFKGSQLHWSVVEKEA FT YPVVYAATELEHLLHRPLGYRIFTDHANLIQIFCPSSDLKKHVRGKLQRWS FT LKRAGTRYEIEHVRGEDNRWAD" FT CDS 3566..4588 FT /product="Gypsy-17_PSo-I_2p" FT /translation="MIACDSPTSDVAVTAILDWHKRYGLPAKWVSDNGSDF FT KSLVMAELATRLRGMQSFVPVYSPWINGTVERINRDLLQVVRALLLELELD FT THTWEFLLPIVQANLNQSAVASLGNKAPMELFTGLPVTTPLDTCLLPDSDS FT QLQHVDLSNVEAFLHQLRAIFHLMHMDAVDRKERRRLYQQTQKKGDICNFS FT AGDFVLWSGVDARLESGKLLVRWVGPFQAEEVKSHSFLIRHLLTRAVHEVH FT GSRLKFYHDPSLELSEELVEHITKQGIVLGVETILQHRFNETSRQHELLIS FT WVELESIEDSWEPLDVMLADIPTKVKEYAASQDDAELRGLCGLQAASQQ" XX SQ Sequence 4645 BP; 1026 A; 1171 C; 1421 G; 1027 T; 0 other; taaagttaac ttgggcgagt gccaagtttc cagctggacc aagagtcgac ccgggaccgc 60 tcttcaagtg ggagaagact caagccacgg atgccgagtt tccgcgtcga cgccgacggg 120 gacgtcgagg tgacgatccc gccgcccgtg tagctgatca gcgcggctga gctcgcgtca 180 tgggaccaag aatcgctcgt caagtggctg cgtgagcgcc gccgctatcg tgaggcgatt 240 gaagagcgct gccgcatcag ccaagagcca gtggcctcgg tgctgcggag tgtgcgcgct 300 tctgtgaagc caaagctgct cgactacctg gcccgctacg tgttccgaca ggaccgcgac 360 acgatcggtg accaagagat catggacaag atcaaggagc gagtcgccga ggtgatgaac 420 tggtacatcc cggacatctt cgacttcttt aagacccacc tgagaatgga cttgaaggag 480 caggatgtgg aggcaagggt cgccaaatac ttcgtcgact ttgaccagtt catcgaggag 540 cacgggtttg cgtccatgct cgcggccggt ggtacggacc gacctgacta ccgcgaccgc 600 atgaagaatc gctgcaagtt gattgtcgaa aacctgtcgc cggccatgct aaaaaccgag 660 atcaagcggt tggtctcgct ccagcatcgt gaggccaaga cggacaacat tgcgttgcat 720 cagctgattc tcacccgtgc caagatgcag cagcggtatc acctgatgaa gcgcgaagag 780 aaagctgacc gcaagcagcc tctgaaaccg gacggaggcc gagcgacacc gaagccggac 840 aacaggaagg cggagccgaa gctggaaacc tcgaggtcgc cgagcagcag gcccggtgtg 900 aacaactcgg ccaagaccca ccaagcgccg ccaaaagacg ggtgcctcta ctgcaagggg 960 ccccaccttg ttcgcttttg tccaactgct acggaggagc agaagcagca gtgctaccag 1020 cgtctgcgtg aatcgaaggt ggccaaggtc aaggctgctc gtgttcggcg tatccctggt 1080 caccaccaag tggtggtcaa cgacttggtg gagttgccgt atcgggcgga cacaggctcc 1140 gaggtcaatg tgctgtcagc cagtgctgtt cgggacctcg cggcatgtgg atcgccggtg 1200 gtcaccactg cgatggagat gccagtgttc ctggagcgag ttggagggga tctccttgcc 1260 tgcaacacgt gctgtgacgt ggacgtcgtg ttgagtacgg cggctggacc tgttcatctt 1320 cgcagggttc actgtgtaat tctcgatgat gatgaagagc tgggaaaccc agcgctggtc 1380 tcgcttggca tcgacgtgga tcgccaaatg gaacagttgg caagtggagg tggtctcgat 1440 ggtgatgacg gagatgatat ccgtggtgat cctgagatcg gccgtgactc cgacgccgag 1500 atgactgagt ttgtcaacgg tctgctcaat acggcgggtg caaacggctt tccggaagaa 1560 gagatgccgg ctctgaggcg catagtgctg gactacaaag atatgtggcg ttcgcgtctg 1620 ggagcagatg aacctgcgag agtgaagcca taccgcgtta cgctggagga aggggcacag 1680 cctatccgct gcaagcctcg gcgttattcg cctttcgcca gttcgtacac cagcaactac 1740 atgagggggt tggttgccag cgggtatgcc tacccaaata atggtagtcg ctggtcaagc 1800 gcagtcgtcc ctgtgcagaa ggctggtggt gaggaattcc gtgtcacttc ggattatcgt 1860 cgcctgaaca gcattacagt gccgattgct gccagcgtgc cgaacctgtc cgtcgtcttg 1920 agtcgtgtca aaggggcgaa ggtcatcggc aagttgttca acatgttcaa ggggttctgg 1980 cagctaccgc tacatgaaga cagtcgtgaa tatttcagca ttcagacgga tgagggcgtg 2040 ttcacgccaa ctcgcgttcc gcagggagga gtggactcgg cgctgcactt ccagtccacc 2100 atgcaagagg cctttgctga tctaatcaat gaccatttgc tcgtgtacgt ggatgatgtt 2160 attctgtttg cgtcgacctt tgaagagtat ctggaggtcc tcgagaagtt tttcgcgcgc 2220 ctgcaagagc tgaatctgaa gctgaacgtg acgaagagct gtctttatca gcaagaggtg 2280 acctggtgcg gcaagattat tgatgggaat ggagtgacgc atgacccggc tcgcgttgag 2340 tcgttggtgt cattgccgct gcctctcaac gctgctgagc ttcagcgttt cctatgtgct 2400 gcaaactggc taagagactc ggtcgttgac tatggacggg ctgtggctcc gttgcaagct 2460 aagttcgatg cagcgatgca gggactgagt cgtcgtaagc gccaagcggc tggcgtggag 2520 atttcgtgga gtgaagatga ggttgagcag tacaaagcgt ttttgaagcg gcttgcgagc 2580 tcagcagcac tttcgtttcc tgatgacgat gccgtggtgt gcctcagctc ggatgcttca 2640 gcgagcggat gggctgttat cctgacccaa gtgaaggact ggaaggatgg cgtcccgata 2700 cacgagcaga gtcacgaact gcttgtttgc aaaggtggtt ctttcaaggg atcacaattg 2760 cattggtctg tagtggagaa agaagcctac ccagttgtct acgcagcaac ggagctcgag 2820 cacttacttc atcggccact cggataccgt atttttacgg accacgccaa tctgatccag 2880 atattttgcc cgagcagcga tctcaagaag cacgttcggg gcaaattgca gcgctggtca 2940 ttgaagcgcg ctgggactcg ctatgagatt gagcacgtgc gtggcgagga taaccgctgg 3000 gctgattagg tgtcgaggtg gccagtgcgc gaggacgtag aggttgtggt gaaggccaag 3060 gctatgagga ctaggagcca agcatcacct agtcagttgc gtcctctgca agacgatgat 3120 tttgagtggc catctccaga agctgtccgt gaagctcaac aacgttacta ccgtgcacta 3180 ccagcttcgt cggaagaacg agaaggtctt cagtatgtcg acggcaaggt gtggattccc 3240 cgccaggcga aggatttgct gactcgtgtg ctggttgtag ctcattgtgg tattcaagct 3300 cacctagggg tccaggtgat gttgaaccag cttcagggct cgtatgccat tgacaacgtc 3360 cgcgaagtcg tgacacgatt tgtcaacgga tgtcttctct gcaagcacat caagggaggg 3420 aagctggtgc agcgtccctg gtcagagaca gcgacggcta ccaagcgaaa tgaggtgcta 3480 cacatggact atatctcaat gggagacagc tatggaagta cgaagtatgt actcgttctc 3540 aaagacgagc taactcactt ctgtgatgat tgcctgtgat tctccaacca gtgatgtcgc 3600 tgtcaccgcc attttggact ggcacaagcg gtatggcctc ccagcgaagt gggtctccga 3660 taatggaagc gatttcaaga gtctagtgat ggctgagctg gccacgcggc ttcgtgggat 3720 gcaaagtttc gtgcctgtgt attcaccctg gatcaacggc accgttgaac ggatcaatcg 3780 agacttgttg caagtcgtcc gtgcgttact gctggaattg gagctggaca cacacacttg 3840 ggagttcctg ttgccaattg tacaggcaaa tctgaaccag agcgctgttg cttcacttgg 3900 caataaggcg ccaatggagc tgttcacggg tcttccggtc acgacaccgc tggacacctg 3960 tttgcttcct gatagcgatt cgcagttgca gcacgtcgac ctgagcaacg tggaggcgtt 4020 cctgcaccaa ctccgtgcaa tttttcactt gatgcacatg gacgcggttg atcgcaagga 4080 gaggcgccga ctgtatcaac aaactcaaaa gaaaggggac atctgcaatt tttctgctgg 4140 cgatttcgtc ctctggtctg gcgtggacgc gcgactggag agcggcaagc tcctagtccg 4200 gtgggtcgga ccttttcaag cggaggaggt caagtcgcac tcgttcctga tacgtcactt 4260 gctgacgcga gcggttcatg aagtccatgg atctcgcttg aaattctacc acgaccccag 4320 cctggagctc tcggaggagc tagtggaaca tattaccaag cagggcattg tgctcggcgt 4380 tgaaaccatc ctccaacacc ggttcaacga gacgtcccgt caacacgagc tgctgatttc 4440 atgggttgag ctcgagtcca ttgaagactc atgggaaccg ctcgacgtta tgttagcaga 4500 catcccgact aaggtgaagg agtatgctgc gagccaagac gacgcggagc tacggggtct 4560 gtgcggtctc caagctgcgt cacagcagta gacgagttcg tctacatgtg tcgacaattg 4620 tgctggactg tgttttggtg ggcgg 4645 // ID Gypsy-3_SMo-LTR repbase; DNA; PLN; 112 BP. XX AC ADFJ01002772; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_SMo_; KW Gypsy-3_SMo-I; Gypsy-3_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-112 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01002772; Positions 119322 119211. XX SQ Sequence 112 BP; 23 A; 23 C; 33 G; 33 T; 0 other; tgacatgaac cacgggaata ttccgagaat attccatggc ctgtgggatt taaggccgta 60 acgccttaag ggttgggagg ttggcctagg gttcgctctc ttgttcgttt ca 112 // ID Gypsy-4_PR-I repbase; DNA; PLN; 5239 BP. XX AC AAQX01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PR_; KW Gypsy-4_PR-LTR; Gypsy-4_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5239 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000384; Positions 32024 26786. XX CC Positions [4008-4493] - Integrase core CC 'CTTGC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 33..5156 FT /product="Gypsy-4_PR-I_1p" FT /translation="MEEADEAMAPHSVSGMPVAMYPPLPPYADRDVQLQET FT TTRTAVIQGSDTRRQVEVLAHQAATVQRRTAEQLGQVQQQQDRLAAQTSEY FT LQAQHDRQSCLLEQQVEMRRQMEEHRQYLEEQYRLLKAAEEAVGLQGQRLE FT NLAEAVKPHLQARWGAFAEGAAPSMDNRPLESPAVTVAAGTNLPVPPIYRG FT SSKKEKREFMDSYAIYTRRIQALNQGTQAKFFVMPLSACIEQGTMVRICGF FT EMFKDEKDVSEAEWRDYFLSARLPDNTAFKTLEIEVKSLCMDTNLQDAESR FT LSRLMADFYEIVDRLNMEDFVQEEPKKVVKYLTEALRPLAFKNAVKDQLER FT QAHKTTKSNIKTYLKWLRDELEGFMRYEVHISAQQQSGHKGKGSYTLTSAS FT QTNPALGGQKHFARTAKESQKPVKAMNNRNGGYASTSKPGKQDKKCFKCGD FT QTHGVFQCPDIASPMEAKELYEKTTGRKVVKPVLVVSTEPTTAAGVSSAIP FT CTVMGVLETSITPDSAAEVSLVTTKLLRMLSGKGAWLTHLDIPGHAAVTGI FT GDTPVTVESKVRLDLRFMTPGGPLVLRNVICWVTEQRLPEGVGDLLLSRWI FT MEKLGYSPEKLLASAQQVSAEWDMGDVEDYPGSTVANVLAYATAREQPELT FT HEERVLEEEEDRACFPEWTSDTSSEREQIKAILLEKVDEAQRFGASAEFVT FT ELKQLLMQRINVFRLVIGRDPPVDMPPMEVTLKPGAVPVKCRARRYSPTHR FT AFLKKHIDALVAAGLCFRNPRSRWCSPPHVVNKPEAGTHRMTVDVRGPNEC FT IESIVWPMPILEVAFEQLRGSSRYFSLDFFKGFWQFAMAALCQEIYSILTE FT EGVITPTRVLMGGTNSVAYVQSTVQQMFAELFNNGLMIWIDDLLGYDATDK FT GLLTLLRKVLTICAEKGLKLNPNKCRFYLREALWCGRVVSGDGVRHDPARI FT TALSNLPEPATGQELQQFVCALNWMRASLPAFNKLVDPLVKVMERVYERAG FT GRKKTQVRVVKLRDVEWGDNESACIEKCKAALQNTLLLAHPDPDKLLSVYC FT DASDEYWGAAITQIPRDQVARPLSEQDHQPLMMLSGSFSGAAKRWAIVEKE FT AYAIVETCRRADYLLHRPGGFALFTDHRNLRYIFDPHSVTKSVPKYTADKL FT HRWSLLLMGYNYEIHDIAGDDNVWADLLSRWGSTIKTICAIRQVALPFSPQ FT LDDTFVWPTRLEIVTAQREATPPSGVTKGNDELWKDAQGRIWIPDEAAELQ FT VRVCVVGHFGIAGHRGTAVTLQQIEKHFVWTGMNEDVEFFVQRCLHCASTL FT GGPPQPRLLGEALHAERPNELLHWDFLFMGNSDTNQEYVLVIKDDASKFVW FT LLPCEAADADTTFAGLVDWFASFGVCRAWVSDQGTHFKNKVIEALQHALGA FT QHHFTTARCPWANGTVEVVMRETLRCCRALLSEWRLQPREWPRVIKIVQLI FT LNHTPSPAIGGVAPVTAMTGLKAMGPSDHIAIPGPVQTTTLDQIQVDQRDH FT VVRLQQALEDMHKRSARVNTATRAAGRKHRAKKKGTSMAQFDIGDFVLYAD FT VWQHVRGKLRVKWCGPAQVVATTSNWIFEIQNLVTGQRKEAHASRLKFYAD FT ASLNVTEDLLLHVAHNGEGHVVHSLLEARYNRQEKRHEIKVHWRGLDAVED FT SWEPADLLLQDVPAVVKAFVRGHGNLTPVKALKKALHIN" XX SQ Sequence 5239 BP; 1381 A; 1203 C; 1487 G; 1168 T; 0 other; aagaattctt tagctgggga gtcgctccca gcatggaaga agccgacgaa gcgatggccc 60 cccactctgt tagcgggatg cccgtagcta tgtacccgcc gctcccgccg tatgcagatc 120 gagatgtaca gctgcaggag acaacgacta gaacggcagt gatacagggc agcgacacca 180 gacgccaagt cgaagtactt gcccaccaag ctgcaacggt gcaacgaagg actgcagagc 240 agctgggaca agtgcagcag cagcaagacc gacttgctgc ccaaacgtcc gagtatctac 300 aggcccaaca cgaccggcaa tcctgtttgc tggagcaaca agtcgagatg aggcgtcaga 360 tggaagaaca tcgccagtat ctcgaggagc agtatcgatt gttgaaggcc gccgaagagg 420 cagtaggttt gcaaggccag cgtctggaga acctggctga agcggtgaag cctcacttgc 480 aagctcgatg gggagcattt gccgaaggtg ccgctccatc aatggacaat cgaccgctgg 540 agtcgcctgc ggtcactgtg gccgcaggaa ccaacctacc tgttcctccg atctacaggg 600 gcagttccaa gaaggaaaag cgcgagttta tggacagcta cgcgatttac accaggcgca 660 ttcaggcgct aaaccaaggg actcaggcga agttctttgt catgccgttg agcgcatgta 720 ttgaacaagg gaccatggtt agaatttgtg gttttgagat gttcaaggat gagaaggacg 780 tgtcggaagc agaatggaga gattattttc tttcggctcg acttccagac aacaccgctt 840 tcaaaacatt agagattgag gtgaagtctc tttgtatgga tacaaacttg caggatgctg 900 agtcccgttt gtctcgacta atggcagact tttatgaaat tgtcgatcgc ctgaatatgg 960 aggactttgt tcaagaggaa cccaagaaag ttgttaagta tttaacggag gcgttacggc 1020 cgttggcttt caagaatgct gtgaaggatc agctcgagcg tcaagcccac aagactacca 1080 agtcaaacat aaagacttac ttgaagtggt tgcgcgatga gttggaaggg ttcatgagat 1140 acgaggttca tatctctgcc cagcagcagt caggccataa gggaaaaggg agttacacgc 1200 tgacatcagc ttctcagaca aatccagctc tcggtgggca gaaacacttt gccagaactg 1260 caaaagagag tcaaaaaccg gttaaggcaa tgaacaatcg taatggtggt tatgcttcga 1320 cttcaaaacc aggcaagcaa gataaaaagt gcttcaagtg tggtgatcaa acacatggag 1380 tattccagtg tccggacatc gcaagtccaa tggaggcaaa ggaactctat gaaaaaacta 1440 ctggtcggaa agtagtgaaa ccagtgttag tagtatctac tgagccaacg acggctgctg 1500 gtgtatcgtc ggccatcccg tgcacggtca tgggagtgct agagacctcg ataacaccag 1560 acagtgctgc tgaagtgtcg ctcgtcacga ctaaactatt aagaatgctg tcgggcaagg 1620 gcgcatggct gacacacctt gacattccag gacacgctgc tgtaactgga attggcgata 1680 caccggtcac cgtggagagc aaagtaagac tggatctgcg atttatgaca cctgggggac 1740 cgctggtact gcgaaatgtg atatgttggg ttactgaaca gagactgccg gagggggttg 1800 gagatttatt gctttcgcgc tggattatgg agaaattagg ctatagtcca gagaagcttt 1860 tggccagtgc acaacaagtt agcgctgaat gggatatggg tgacgtggag gattatcctg 1920 gtagtactgt ggcaaatgtg ctagcatacg ccactgcgag agagcagcca gagctgaccc 1980 acgaagagcg cgttttggaa gaggaagaag atcgagcatg tttcccggaa tggacgagtg 2040 atacttcctc cgagcgtgaa caaatcaagg caatattgct ggaaaaagtg gacgaagccc 2100 aacgcttcgg tgcatcagca gagtttgtga cagaattaaa acaactactg atgcagcgga 2160 ttaatgtctt tcgtctcgtc attggtcgtg atcctccagt agatatgcca cccatggaag 2220 tgacattaaa gccgggggcg gtaccagtga agtgccgagc tcgaagatat tcgcctacgc 2280 accgtgcgtt tctgaaaaag cacattgacg cgctggtcgc agcagggctg tgtttccgga 2340 atccacgaag caggtggtgt tctcctccgc atgtagtaaa taaacccgaa gccggaactc 2400 accgtatgac tgtagacgta cgtggtccaa acgagtgcat tgagtcgatt gtatggccaa 2460 tgccgatttt ggaggtagcc tttgagcagc tacgcggatc ctcacggtac ttctcgctgg 2520 atttcttcaa ggggttttgg caatttgcca tggcggcact ctgtcaggag atatactcaa 2580 ttctgaccga agagggagtt atcacaccga ccagagtcct aatgggaggg acgaacagtg 2640 tggcttacgt ccaatcaaca gtacagcaaa tgtttgctga acttttcaac aacgggctaa 2700 tgatttggat agatgaccta ttgggatatg atgctacgga caaagggctg ctgacacttc 2760 tcaggaaggt gctaactatt tgtgccgaga agggtctcaa actgaacccg aataaatgca 2820 ggttttacct tcgcgaagca ctgtggtgtg gtcgcgtggt ctcgggggat ggtgttcgac 2880 atgatcccgc taggattacg gctctctcga acctaccgga accggcaaca gggcaagagt 2940 tgcaacagtt tgtatgtgca ctaaactgga tgcgggcgtc gttacccgca ttcaacaaac 3000 ttgtggatcc tttagtgaaa gttatggaga gggtgtacga gcgtgcaggt ggccgcaaga 3060 aaacacaagt gcgcgtcgta aagctgcgtg atgttgaatg gggtgataat gaatcggcct 3120 gtatcgaaaa gtgtaaggct gccttacaaa atacactgct gctggcgcat ccagaccccg 3180 acaagcttct gtcagtctat tgtgacgcga gtgatgaata ttggggagca gcaatcacac 3240 agattcctcg agaccaggtc gcacgcccac ttagtgagca ggatcaccag ccgttgatga 3300 tgctgagtgg ttcattttcg ggggccgcca aacgatgggc tatagtggaa aaagaggcgt 3360 acgcgattgt tgaaacgtgt cgtcgggctg attatctgtt gcatcgtcca ggtggattcg 3420 cactattcac cgaccatcgc aatctccgat atatctttga tccacacagc gtcaccaagt 3480 cagtgccaaa gtatacggca gacaagctcc accgttggtc actactgctg atgggctaca 3540 attatgagat ccacgatatc gcgggggatg ataacgtttg ggcagacctt ctgtccagat 3600 ggggctcaac cattaagaca atttgcgcta ttcgacaagt ggcgcttcct ttttcgcccc 3660 aactggatga cacatttgtc tggccaacac ggctagaaat tgtgactgca caacgagaag 3720 caacaccacc ttccggcgtc actaagggca atgatgaact ctggaaagat gcacagggga 3780 ggatttggat tcctgatgag gcagccgaat tgcaggtgcg ggtttgcgtc gttggtcatt 3840 ttggcatcgc tggccaccga ggtacggcgg tgacgctaca gcaaattgag aaacatttcg 3900 tttggactgg gatgaacgag gacgttgaat tttttgtaca gcgctgttta cattgtgcga 3960 gtacccttgg gggacctccc caaccgagac tacttggcga ggccttgcat gcggagcgcc 4020 caaacgagtt gcttcattgg gactttttgt tcatgggcaa tagtgacaca aaccaagaat 4080 atgtactggt aataaaggac gatgcgtcca agtttgtgtg gctactgcca tgtgaagcag 4140 cagatgcaga cactacattt gctgggctag tggattggtt cgcttcattt ggagtatgcc 4200 gtgcctgggt gagtgaccaa ggcacgcact tcaagaacaa ggtcattgag gcacttcagc 4260 atgcgctcgg ggcgcagcac cacttcacta ccgcgcgctg cccgtgggca aacggcacag 4320 tggaagtagt catgcgagaa acgctgcgat gttgccgtgc ccttctttcg gaatggcgat 4380 tgcaacctcg agagtggccg cgtgtgatca aaatcgttca gttgatattg aaccatacac 4440 catcgccagc aattggaggg gtggccccag tcacggcaat gactgggtta aaggcgatgg 4500 gcccaagtga tcatatcgcg ataccaggac ctgtccaaac aactactcta gaccaaatcc 4560 aagtcgatca gcgtgaccat gtagtgcgac tgcagcaggc actggaagac atgcacaaac 4620 gaagtgcacg ggtgaatacg gcgaccagag ctgcaggacg caagcatcga gcgaagaaga 4680 agggaacgtc tatggcgcaa ttcgatatag gtgacttcgt cttgtatgct gatgtttggc 4740 aacacgtacg gggtaaacta cgggtgaagt ggtgcggtcc ggcacaggtc gtggcgacca 4800 catccaactg gatctttgag attcagaact tggtgacagg ccagcgtaaa gaggctcatg 4860 caagtcgact gaaattttat gcagatgcgt ccctcaacgt caccgaggat ttactgttac 4920 acgtagccca caatggcgaa ggacacgttg ttcactcgtt gctggaggcg cgatacaatc 4980 gccaggagaa gcgacacgag attaaagtac attggcgcgg actggatgct gttgaggact 5040 cctgggaacc cgcagacttg ttactgcaag atgttccagc ggtggttaag gcatttgttc 5100 ggggtcatgg aaacctgaca cccgtgaagg cacttaaaaa ggcactccac atcaactagg 5160 gacgcctggg agttcctgac agcgactcaa tggaaggccg cacttaactt tctagggaca 5220 actgttctag agggggaag 5239 // ID Kolobok-1_MicRcc299 repbase; DNA; PLN; 3961 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Kolobok; DNA transposon; Transposable Element; KW Kolobok-1_MicRcc299. XX OS Micromonas sp. RCC299 OC Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; OC Mamiellales; Micromonas. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3961 BP; 1125 A; 968 C; 1061 G; 807 T; 0 other; ggtcatccct accctaatcg atttttttgg gcccaaaaac cgcgttttcg cgggaaataa 60 agacggcggt tcgacggcgg tgcgcttccc aacccgtcga cgccgctagg ataaagattt 120 ttgtacagga tttatagagc ctcaggtaca ctccccgata cacctttcca tcgccccaga 180 tgcgaaagat ccttttggcg cacgtccgcg acgcgcgcgc gtcgccactg aaaaagtaac 240 gatcgcacgc aggcgttaac gcgaagcaac gacaaggccg aaggaacgcc atcgcggtga 300 cgtatctcac atctttccac cttcgcagca tgcagaactt cgcccccgag gagttcaagg 360 agcaaggcaa ggtcctcgat gactatgcca tggaatacga tgttccagac gtccagttgt 420 cgaggctgct cgacgccgat tatttggtat cgctcgaggt tgcataccca caagatcgcg 480 acgtgtcgga ccctccgacc aacgcggaga tgcgcttcaa ggcgcgccgc tggatcaagc 540 ggactgtcga agatggctcg attggtcgca gccgactgcc ggaggatgtc gaagctgcca 600 tcaaatcccg ttaccccgac gaagatggag cttacaaggg cttcaagtct aagaagtagc 660 gagcgtttct atcaagacaa gattttcacg tacgagtaga tctcattgcg cgtcgcgccg 720 agccgtagac gatgttgcct gcatccggac acggccatgg cgatcattcc gcacatcccg 780 aacagagtat cgcgcaagcg ctcaacttcg aagcgctcga tcttaccggt accaacccct 840 gggtcgatga tgtcgatatg gaaacatctc agggagacga agggccgttt acacttcagg 900 aagccgtcag caagaggcgg cgcggccgtc caaagggctc gtcgactaaa aagaggagaa 960 gatcacaatc tgagccccgt atggttggcg tccgggaacg cacacaaacg caattattta 1020 gcccgtcaaa gaacatgaag gtttcggacg agccacacgg caagatggtg gaaaagagtc 1080 caacagagct gctccccctt gacgcaccgt gggtagatat tagaggtgaa agagtaataa 1140 tagagttgca tcagctggat cagtctttac agcaagtgcc ctgcgggtcg tgtccacttg 1200 atggacatct acgattggct cgggacatca caactgggaa gctgacggac acccagactg 1260 gactcgcaca tgagttcttt atggaatgcg acaaatgcat gcttggtcac cctctcgcca 1320 cttcctccaa gattgagaca tccgaaggtg tcgctggcag aaagccattc gtcgtcaatc 1380 gagccgccgt aacggctggt gaattgtgtg gagttaggcg tgaacggcag acaaagatgc 1440 ttatgatgat gggcatcaaa ggtattatga aagacaaaac ctggatggta cacgccgatg 1500 aggtttacct cgaggtcgag tatgtccatt acaatcagat caaagaaaac aggagaaaag 1560 tacgggccta catggaaaaa aagggcttca cgcccgacga acacggccga attgcaatcg 1620 ttgtttctgc ggatgggtcg tgggcaatca aaggatacac atcgaattgt ggccaagcat 1680 ctctgatatt ttcttgtgaa gatttcgaca gactggtggt ggcccaagat ttcaggcaaa 1740 agacttgcag cacgtgcgat tggtatggca agaacaaacc atcgtgggtc gtccctcctc 1800 acgtttgccg taaaaattac accgacacct cgaagtccat ggaacaggat attctcatca 1860 gcctggttga cgacgtcgcc atctacgagc acaagacagt agacggtacg atggaagaga 1920 aaccgatgga agaaaggttg gtcatcgaag cagtatgcgc agacgaggat tcttcgtttt 1980 ggaatagaat cacacaggac ggagcattga aaaaccagtt cgccccacgc aaactcagtg 2040 atgtcaacca cttgagtaat tgtctcatgc gacgccttgc tgggcagaag gcaaagaaga 2100 tgaaaaacac gagcctgctg tcgaatgccg tctgccaaaa gttctgcact tcattcaggt 2160 ggatcgttaa gcaaaacact ggcgatcatc aacgcgctaa ggcgcaatta gagaacatga 2220 tatgtcacta ctttgacgac cacacaaact gcggtgactt tccaaagctt aacgaagatg 2280 ggacccctaa ggagcagtgg tgccgcgcac aagtagcagc agaaaacgaa gcggaagagg 2340 gcgacgacca cgccggaccg accaactttc cgcggaacaa atatttggac aaaatagtta 2400 cagtgaagcg cggaaagtat gaggaaacca tcgtcgatgg cgcgactaaa aaaactttag 2460 ttggagctga agattatgaa atcaactatt tcgacgacgt caaggaagtg ttcaaagtat 2520 tcctaacaga tcaggtaatc aaggcggcta cgtcgggcta cagcagcaat gtgaatgaga 2580 gtcttcactc ggtacaggtc agcatgatga atggcaagca tacattcaag ggccagcgcg 2640 gtaactacgt gatgtgcatg caggctgcga cgttgaagca ttcgttgggg atggactatg 2700 tgctgaacct tcttcccaga tgtggcgttc ccgtgactct tgagatgacg cggcatttca 2760 atagggcaac aaagaaggcg gaggccaaaa agctgtatta caagaagatt gaaacaaaac 2820 tcatccgaaa gaagaggaga atgctgaaaa ggaagcagag ttttgaagac cgtcgtaata 2880 aacctgaaga ttaccgcaaa gggatggcac tcgacgcctt gcaagagaaa gatgatgact 2940 cggcagatga cgaagccgat tcagaaaccg aagaacccga tggcacaggc gaccttgtgc 3000 agtgtcttcg ctgccataag agggaggcga cggaagagaa ccccatgctc ttctgctgca 3060 accagatgac atgtggccaa gcgattcacg aggaatgcgc gggtggttgg agctatgtcg 3120 tgccgccccc caaaggcgat ccgaaccgcg aagaatcgct caaatcgtgg ccctgtcctg 3180 aatgccaata taaatcgcaa atgtcggagg atcctgaatc tgaactcatc gctgagcccg 3240 aagagttgca cgcaccacct gagagacatt tgtagatagt tgagatgttg tgtttgagaa 3300 aatagagttt ccagtgtgtg gccaaagtag aaagcaaaca ctttgtaaaa ataaagataa 3360 actcgcgcga atcgtgtgga tcgacgtgga tacatcacac gatcacgacg cgcttttgtc 3420 cgcataaaaa aagctaacga gccaaaggcg cgcgccgcgt ccagcctctc cggaattaga 3480 ctgaaaaaag ttgacgaaaa aaactccatg gtcgccgtgt tcaggagcat ggcgaggggg 3540 ctcaccattt cggtatccca ggacaaaata ggtaaaccta cgtctccacc cgaggacatc 3600 acgtccacgt gctcaaataa ttttcgtttg aaggtctcgg ggtccatggc gcgcgaatgt 3660 ccggatcttg ctgatccgga caaatgcgct catgagcgcc cgagaccttg aaacgaaaat 3720 tatttcagga cgtggacgtg ttgtccacgg gtggagacgt aggtttaccg ggtcatttca 3780 cttctcagca tttcgaaggt gccgcgacct tgtgtgcgga accgcgaccc atggctaaaa 3840 ctttttcgca agaggagcat aacgtcacct ttttccccat taaattacat acgaggcacc 3900 gcgacgggct gaaaaatcgt cgaaaagtga cgaaaaaaaa tcaattaggg tagggatgac 3960 c 3961 // ID Copia-1_PIT-I repbase; DNA; PLN; 4975 BP. XX AC AATU01000092; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PIT_; KW Copia-1_PIT-LTR; Copia-1_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4975 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000092; Positions 177131 172157. XX CC Positions [2328-2840] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 51..4481 FT /product="Copia-1_PIT-I_1p" FT /translation="MSVTGRLDFTDLDSPQAMPPIARAERAHRRNLGFVHT FT ELHKAVRERVREQEAFPTPPRRPRRNNTTGSIADATSPGIAAKSSPSTHST FT QLSDAEMIVVLTARLEESRARMDDAMEVIRMQQGMLDKKNRAEQRLAALQA FT AVRKQHYESHELEEEVGEPKQSERDDESSSGWGQQASAMSQMTSLDDLHRP FT TIAQQSTITKSSNTGITRPDDTPKSKTTGSAPGRTKEECETQAQEVEAINP FT PVEQKPTHSPKTAEKSPKLKDIHCRRFNGKEEYPGLGAGLEDFLNEFEGAI FT RMEKLLNKSTWSSQLKAPVLGTFLEGQASRSYHDFVADREVSYEDLTVHLK FT KEFGCHLSQYELARRMDAPKRQNDTWKQYITYLKFIERLMVGDRSQLLLET FT VCNNACPEEKSTLLSKIDETNTNYMDELDKVVDLLIRLKGDGRRVGNARPG FT GQGSVPRQPQQQGQHHSNGNPIKKRVGQGNSPKQQRQSQTTGQQRQGLKQN FT HNAQANASEKTITCWNCGEPGHKSLQCKKPKKQQQASVHQAQRLERDADES FT DDESAELWMANEHGETTSTNWLVDSGASHHMCSTSTPLFGTSPSDLTIRVA FT NGGLLHANVKGSCIIRASNGYATRSVLLHEVHQVPGLNRNLISVTDLGEHG FT ITTSFGASACTLTNQRGDIVAIAKRQGKMWILNGETARTDDNAAVMFAQMT FT KATLQHWHERLGHVNFQDLLRMYNHGLTEDMDVVSKKLKFCLSCAQAKQTK FT SKQPTVDTSTSAPTDQLGAVIGVDLKTDIQPDRNGNKHMLTIVDYASSYNR FT VFLLQTKNEAAKHLMNFIPEFERQFGVTVKTIRSDGGGEFRSHEVTKYCSR FT HGIVHQETLPNKSASNGKVERMHRTLMNSGRAMVWASGLPERYWGDAVKYA FT SYIRNRLPTRANADYKAPLDVLTGKPPKVGHILKFGSTCTTHVSHKKAASV FT KRRAEKAVVIGISENQKGYRLLLPRTRKIIASSDVQNIEKLDIREKETQEA FT LSQLGGKEEQTPPEEEPAEESVTEQTSSATGLVEISTPNSTSKWKRKKRTI FT NLSETSDSGEDEYHGHPISAGAIRRVFGSRKKTKRQSDFSLPQLLIEEFAG FT SATLLLTTATPPMVTPRNLDEAMQTPEWPQWKEAIEKELKELQSNGTWEVI FT KCPAGANVVSSKWVFRIKFNSRGELERFKARLVARGFTQRFGIDFEETYSP FT VLKITSLRFLAALAAQWKRRLRQGDVPNAYVKAKLDRPILMRPPKGTPCTR FT DTAWLLLKGLYGLKQSGLLWNKEINAFLLSLQFRRSKLDPCLYSRRRNGKL FT TVLGLYVDDVIIVSEDDADSDEVMLLLGQKFDIKDMGDAEKCLGICIKRND FT EGIFLHQSDTIEELLANMEMASCRPVHTPMDTTRSFDDNEMMTNTGLMRKA FT IGSLLWISNCTRPDITAAVNYLARFVSRPRQSHWTGVKRILRYLRGTSSFG FT LFFKSGQGAGCQ" XX SQ Sequence 4975 BP; 1481 A; 1252 C; 1295 G; 947 T; 0 other; aaaggttctg agcccaagta ccgcactcta ccgattagaa gacgtcgacg atgtcggtca 60 cgggacggct cgacttcacg gacctcgata gtcctcaagc gatgccgccg atcgcacgag 120 cagagcgagc acaccgtcga aacctgggat tcgtccacac tgagctacac aaagcagtac 180 gcgaacgagt gcgcgaacaa gaagcattcc ccacgccacc gcgacgacca cggcgcaaca 240 acacgacagg aagcatcgca gatgcgacct caccgggcat agcggcaaaa tcaagcccat 300 ctacccacag cacacagctt tcggacgcag agatgatcgt ggtgctaacg gcgcgcctgg 360 aagagtccag ggcccgtatg gacgacgcta tggaagtcat ccggatgcag caaggtatgc 420 tggacaagaa aaaccgggcg gagcagagac tcgctgcact ccaagcagca gttcgcaagc 480 agcactatga gagtcacgag ttagaagaag aagtcggaga gcccaagcag tcggagcgtg 540 acgatgaaag ctcctcgggc tggggacagc aagcatctgc gatgtcccaa atgactagtc 600 tggacgatct ccatcgacca acaatcgcac aacagtcaac tatcactaag tcctcaaata 660 ccggaattac cagaccagac gatacgccaa agagcaaaac gactggctct gcaccaggtc 720 gcacgaagga agagtgcgag acgcaagcac aagaggtgga agcgatcaac ccacctgtcg 780 agcagaagcc gactcattca ccaaagaccg ctgagaagtc tccgaagctt aaggatattc 840 actgccgacg gttcaatggc aaggaagagt accctggcct aggagctgga ctcgaagatt 900 ttctgaacga attcgaaggt gcaatcagaa tggaaaaact cctaaataag tccacgtggt 960 caagccagct taaggcgcca gtcctgggca cattcttgga gggccaagca agccggtctt 1020 accatgactt cgtggccgac cgcgaggtga gctacgagga cctaacggtg cacctgaaga 1080 aagagttcgg ctgccactta agccagtatg agctggctag acgcatggac gcacctaagc 1140 gacaaaacga tacgtggaag cagtacatca cttacctcaa gtttatcgag cgcttaatgg 1200 tgggagatcg atcgcaacta ctgcttgaaa cggtctgcaa taatgcatgc ccggaggaga 1260 agtcaacact cctcagcaag atcgacgaaa ccaacacaaa ttacatggac gagctagaca 1320 aggtcgtcga tttactgatc cgtctcaaag gtgacggacg gcgcgtaggt aatgcgcgac 1380 ccggaggcca agggagcgta cctcgccaac ctcagcaaca aggacagcac cacagtaacg 1440 gcaaccccat taagaaacgt gttggtcaag gtaacagccc taaacagcag aggcaatctc 1500 aaaccactgg tcagcaacgt caaggtttga agcaaaatca caacgctcaa gctaacgcaa 1560 gcgagaagac aatcacctgc tggaactgcg gagaaccagg ccacaagagt ttgcagtgta 1620 agaagccaaa gaaacagcag caggcctcgg ttcaccaagc ccagcgccta gaacgcgatg 1680 ccgacgaaag tgacgatgag agcgcggagc tatggatggc aaatgagcat ggagaaacga 1740 catcaacaaa ctggctggtg gactcaggag cgtcacacca catgtgctcc acgagcactc 1800 cactgttcgg cacttcacca tctgacttga ccatcagagt ggcaaatggt ggcctgctcc 1860 acgctaacgt taaaggaagc tgtattatcc gcgcaagcaa tggttatgct acgcgatccg 1920 ttcttttaca cgaagtacac caagttccag gtcttaaccg caacttgatc tcagtcactg 1980 acctcgggga acacgggatc actacttcgt ttggagcatc agcgtgtacg ctgacgaatc 2040 aacgtggtga catagtcgca attgctaaac gccaaggtaa aatgtggatc ctgaacggcg 2100 agacagcacg cacggatgat aacgcagcag tgatgtttgc gcagatgacg aaggcaacct 2160 tacagcactg gcatgaacgt ctagggcacg tcaatttcca ggacctccta aggatgtaca 2220 accacggttt gacggaggac atggatgtcg tctcaaagaa gcttaagttc tgcctgtcct 2280 gtgcacaagc aaagcaaacc aagtcgaagc aacctacagt agatacatct acatccgcac 2340 ccaccgacca acttggagca gttatcggcg tagacctaaa gacagatatt caaccggaca 2400 ggaacgggaa caagcacatg cttacaattg tggactacgc atcgagctac aacagagtct 2460 tcttgctgca gacaaagaat gaagcggcaa aacacctcat gaacttcata cccgaatttg 2520 agcgccagtt tggagtcaca gtaaagacga tcaggtcgga cggtggtgga gagtttcgaa 2580 gtcacgaggt cactaaatac tgcagtcgac acggaatcgt tcatcaagaa actcttccga 2640 ataaatctgc gtcaaatgga aaggtcgagc gcatgcacag gacattgatg aactcaggcc 2700 gtgccatggt ctgggcatcc ggtcttccag aacgatactg gggagatgcc gtcaagtatg 2760 cctcatacat acgcaaccga cttccaacaa gagcaaacgc agattacaaa gcacctttgg 2820 acgtactcac tggtaagccg ccaaaagtag gccacatatt gaagtttggt tctacatgca 2880 caacgcacgt ctcgcacaag aaggccgcct cagtcaagcg ccgagcggag aaagcagtag 2940 tcatcgggat ctcagagaac cagaagggtt atcgtcttct tctgcctcgt actcggaaga 3000 ttatcgctag ctccgacgtc cagaacatcg agaagctgga catccgcgaa aaagagaccc 3060 aagaagcact gagccaactc ggcggtaaag aagaacaaac accgcctgaa gaagagcctg 3120 cagaagaatc cgtaacagaa caaacaagca gtgccacagg gttggttgag atctccactc 3180 caaatagtac gtcaaagtgg aagcgtaaga aacgcactat caacctcagt gaaacctcag 3240 acagcggcga agacgagtac cacgggcacc ctattagtgc cggtgcaatt cgccgtgttt 3300 tcggctcacg taaaaagacg aaacgccaaa gcgacttctc gctacctcaa ttactcatcg 3360 aagaattcgc aggatcagca acacttttgt tgacaacagc tacgccacct atggtaaccc 3420 cacgtaatct cgacgaagca atgcagactc cagaatggcc tcagtggaaa gaggctatcg 3480 agaaggagct aaaggaactt caatcaaatg gtacatggga agtcatcaag tgtcctgccg 3540 gagcaaacgt cgtgtcgtca aaatgggtgt ttcgtatcaa gtttaactca cgtggagagc 3600 tggaacggtt caaggcacga ttggtagcta gaggatttac ccagcgtttt ggtatcgatt 3660 tcgaagagac ttattcaccg gtgctgaaaa tcacaagctt gcgatttctc gcggcacttg 3720 cagcccagtg gaaacgaaga cttcgtcaag gagacgttcc aaatgcttac gtcaaggcta 3780 agttggatcg gccaatcctc atgagacccc cgaaaggtac gccgtgcaca agagacacag 3840 cgtggctgct actgaaaggc ctgtacggcc tcaagcaaag cggattattg tggaacaagg 3900 agataaatgc atttcttcta tcgctgcaat tccgcagaag taagctggat ccatgcttat 3960 actctcgtcg ccgaaatggg aagctcactg ttctcggact ttacgttgac gacgtgatta 4020 tcgttagtga agacgatgct gacagcgatg aagtcatgct attactgggc cagaaattcg 4080 acatcaagga catgggagat gcagaaaaat gcctcgggat ttgtatcaag cgcaatgatg 4140 aaggcatttt cctacaccaa agcgacacca ttgaggaatt gctggcaaat atggaaatgg 4200 catcatgcag accggtacac acacccatgg atacgacgag atcatttgac gacaatgaga 4260 tgatgacgaa tacggggttg atgaggaagg caattggatc actgttgtgg atctcgaact 4320 gtacacgacc ggatataacc gctgcagtca attacttggc aagatttgta tctcggcctc 4380 gacaaagtca ctggacggga gtcaagagaa ttttgcgcta ccttcgtggc acttcatcat 4440 ttggactatt ctttaagagt gggcaaggcg caggctgcca atgacgcgcg acagtttaca 4500 cggacgccga ctgggcagga gactcatcgg atgcgaagtc agtatcagga gcagttctta 4560 tgcttaatgg tgccgttatc gcatgggctt ctaagaagca gacgtctgta gctctctcca 4620 cgatggaggc cgagtacgtc gcagcagcag tagccatgaa ggaggctata tgggtgaaac 4680 aacttctcgt cgaaattgga ttatggacca aggacaagac aatcgtgcta caggtggata 4740 accagtcagc gattaaatcg atgaagaatg agataaccag cgctcggagc aagcacataa 4800 atatccggta tcactttatt cgggatgtga ttcagcgagg ggatgtaatg gtgcagtatt 4860 gcccaactca gaagcaactt gctgatattt tgacgaagcc actacagcgc gtggcatttc 4920 agcgacttcg ggagcaacta cgggtgggtc aactgggcaa gacttcgagg gaggc 4975 // ID HOLN2_EA repbase; DNA; PLN; 404 BP. XX AC AB016149; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Equisetum arvense LINE retrotransposon HOLN2_EA, endonuclease DE region. XX KW L1; Non-LTR Retrotransposon; Transposable Element; HOLN2_EA; LINE; KW endonuclease; long interspersed nuclear element. XX OS Equisetum arvense OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Equisetopsida; Equisetales; Equisetaceae; OC Equisetum. XX RN [1] RP 1-404 RA Noma K., Ohtsubo E. and Ohtsubo H.; RT "Non-LTR retrotransposons (LINEs) as ubiquitous components of RT plant genomes."; RL Mol. Gen. Genet 261(1), 71-79 (1999). XX DR Genbank; AB016149; Positions 1 404. XX SQ Sequence 404 BP; 115 A; 58 C; 125 G; 106 T; 0 other; ttggaatgcc gaggtctaaa tgacccagag aaagtggata gggttaggag tagaatcagg 60 gagttgaagc ctgatgtggt gcttatccaa gagactaaga taggccaggc cattgagttt 120 gtcttatggc atgcctactg gaaggacttt tgtgtgtgtt agagtagagc tgaagagagt 180 agaggagggg tggtcactct agtgaggaag aattttatcc ttgaagagga ggaggaggtt 240 gtcaaagggc acctgattag agttggaatt aaaggggaca tgggaagaat taacattttc 300 aatgtctatg ctaatgccta ctctagctcc ataagagcta agatgtgggc tactcttagg 360 gacagggaca tgactggtaa ttggcttttc cccggagact ttaa 404 // ID Copia-48_PIT-I repbase; DNA; PLN; 4783 BP. XX AC AATU01006156; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-48_PIT_; KW Copia-48_PIT-LTR; Copia-48_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4783 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006156; Positions 89962 85180. XX CC Positions [1723-2226] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 40..4773 FT /product="Copia-48_PIT-I_1p" FT /translation="MSTTNNNKKGGSDDKKKAHPPFDGQDFEVWLERMTLK FT LQRKGLWSYCEKEPTEPSFTDDEAKGEETDDHAKYMKESRRAKEILYDGMT FT DKIMKTVKYEATPYKVMEHLKKRYIGKTYFKYAAEMTKLRKLQLDAKGNMS FT DHLGEIRRLMDRIGLLGKPLDDYEKPALLIGSLPSDYDNVVETFLASHVPT FT DPNEPPNYEQLEHALEAAYDRRQDRKVAADNIDEENALFADGGRGRGRGAG FT RGRGAERGRGRGRGRFSGRGRGRGEGCGRGRGEGYGRGRGAGGRGSYGQGG FT GPECFHCKEKGHRVYGCPHLGKRPPNETKSNAPSSKRSNTSRKGTYNESDD FT EAYVILHVMNLKRPIADLAHDRWYLDSGATSHMTNQLTDFVDFTPFSARVR FT VGGNHSLSVEGIGTVVKLLSTSSGKQRLTLRGVRYVPELQCSLYSVRRQVN FT KDVPITERVKVHFDEPEGADVMLQDGNTVAHVDETNLYRLDLESPSNVAMV FT ALPKKTDEVRLWHTRLGHPGRSVFNALFRHDAWPLSNVDLRTPEHFECETC FT VKGKITRKSFKSIAVQHREWLVGEMTHLDVWGPYAEPSYGGKKYFAVIVDD FT ASRFATVVLLERRSDIYDEFDAYYERVKTQLHVRMKSLRSDNAKEFDKLQQ FT NCARYGLECTTSIKHTPEQNGVAERMIRTLTERMRCLLSHFNLPQPMWAEA FT VMTAAYCLNIMPNSVRGMEIPYTVWYRETPSYSKLRPFGCAALTYIDKVER FT RKLDAKAREAIFVGYSREKRGYRFLDSKTRKAFYSHTAVFYEEKPGRVIAG FT TADSVTHAASTGEYFGLNDSTVRDLEPILDEMHEEDEAKKRCENKRRDGEA FT TDEKTEKSQTGGAELCDENKSDVALSSRKRGRIHEMMTDKPQKRVRFHRSK FT RCPAPAAALVERGPEGQEEDATAKVPKSHVDDDVERIAAHTQQSSLEQEPL FT EDGESKSYPVTRSGRVSKPPRWLSDSVHLAYKESTNADDTRGLTVATGIEW FT KKARAQMQLEIAKERAMDVWQDFVCLTASAMFEPTSYKEAMQSDEAKQWKD FT AMDAEYEALLKNGTWKLVRRTKDMKVLNNRWVFRVKYHANGDIDRFKARLV FT IKGFMQIYGIDFFEVYSPVVRLETLRILLTLASIWDYEVDQMDVTTAFLNG FT GIDVTVYMEQPEGYEVKGKEDFVCVLLKSLYGLKQAPRVWFRLLKDFLESE FT GYTLMQCEACVAVKAVDGWLVFISIYVDDLILFAPTKAMMNVMKQMLFRRF FT VMKDLGPIHYILGWEITRNRQERTMFINQKKYAEKVLQRFDMAKCNGCRVP FT SDVSLKLSKSMCPTTNDERELMKTKPYRAVIGSLMYLMLGTRPDFAFMVRE FT CSQFLENPGILHWRAAKRGLRYLKETAEWGLCLGGVQERQKLTHHLQAFAD FT ADFANRVDDRKSVAGYLTQFCGSTISWCSQTERTVALHTTEAEYMALSLLV FT QEVVHLRQMLRELKVKQVKPSDVFVDNESAKKLAKNPEFHSRTKHIDVRHH FT FVRERIELKQIDVKRVPGVENVADAFTKPLPRANLEQHRSAMGLISKETFE FT STGGRHSDDNQ" XX SQ Sequence 4783 BP; 1314 A; 974 C; 1432 G; 1063 T; 0 other; agtggttatg agcccaacaa gtcacctgta acaagaacga tgagcaccac aaacaacaac 60 aagaagggcg gatcggatga caagaagaag gcacacccac cttttgatgg ccaggacttc 120 gaagtgtggc tggagcgaat gactttgaag cttcagcgca aaggactgtg gagctactgc 180 gaaaaagagc ccacggaacc gagtttcact gatgacgagg cgaaaggaga ggagacggat 240 gatcatgcta agtacatgaa ggagagtagg agagcaaagg agatcctgta cgatggtatg 300 actgacaaga taatgaagac ggtcaagtac gaggcaaccc cgtacaaagt gatggaacat 360 ttgaaaaaac ggtacatcgg aaagacttac tttaagtatg ctgcggaaat gacaaagttg 420 aggaagctgc agttggacgc caagggcaat atgtcggacc atctcggcga gatccgacgc 480 ctgatggaca ggatcgggct gcttgggaag ccactagacg actacgagaa gccggctctg 540 ctcattggct cgcttcccag tgactacgac aatgtggtgg agacgttctt ggcttctcac 600 gtgccgactg acccaaacga acccccgaac tatgagcagt tggagcatgc ccttgaggct 660 gcgtacgacc gccgccaaga ccgcaaggtg gcagccgaca acattgatga agagaatgcg 720 ctgtttgctg atggtggccg aggtcgcggt cgtggggctg gacgcggtcg tggggctgag 780 cgcggtcgtg gtcgaggtcg cggacgcttt agtggacgcg gacgaggccg tggagaaggt 840 tgtggtcgag gccgcggaga aggttacggc agaggccgag gtgctggcgg acgagggtcg 900 tacgggcaag gtggtggtcc agagtgtttt cactgcaagg agaagggaca tcgagtgtac 960 ggatgccctc atcttggtaa acgaccgcca aatgaaacga agagcaatgc cccgtcgtca 1020 aagcgcagca atacatcaag aaaagggacc tataatgaat cggatgatga ggcctacgta 1080 attcttcatg tgatgaactt gaaaaggccg attgcagacc tcgctcacga tcgatggtat 1140 ttggactctg gtgctacaag tcacatgacc aatcagttga cagactttgt ggatttcacg 1200 ccgttcagtg cacgggtgcg tgttggaggt aatcactcct taagtgttga gggaattggt 1260 acagttgtga aactgctgag cacaagcagt ggaaagcaaa gattgacgtt gcgtggagta 1320 agatatgtgc ccgagttgca gtgcagtcta tactcggtgc gacggcaagt aaataaagat 1380 gtaccaatta cggaacgtgt gaaagtgcat tttgacgaac cagaaggagc tgatgtgatg 1440 ctgcaagatg gaaatacagt ggcgcatgta gacgaaacaa acttgtatcg gctggatctg 1500 gaaagtccca gtaacgtggc catggtggct ctgccaaaga agactgatga ggtgagattg 1560 tggcacacta gactaggcca tccagggcgt agtgtgttca acgcattgtt tcgacatgat 1620 gcatggccac tgagcaatgt ggatcttcgt acccctgagc attttgagtg tgaaacttgt 1680 gtaaaaggga aaattactcg aaaatccttc aagtcaatag cggtccagca tcgagaatgg 1740 ttagtgggcg agatgactca ccttgatgtg tggggtcctt atgcagagcc gtcttacggt 1800 ggtaagaagt actttgcagt cattgtcgat gatgcaagtc ggtttgctac tgtagtctta 1860 ctcgaacgtc gctcggatat ttatgatgag tttgatgcat attacgaacg cgttaagacc 1920 cagctgcatg ttcggatgaa aagcttgaga agtgacaatg cgaaagaatt tgacaagctg 1980 cagcaaaatt gcgctcggta cggactggag tgcacgacta gtattaagca cacgccggaa 2040 caaaatggag ttgctgagag gatgattcgg actctaaccg agcggatgag atgcttgctg 2100 tctcatttca acctaccgca gccgatgtgg gcggaagctg ttatgacagc agcatactgt 2160 ctgaatataa tgccaaattc cgtgcgaggc atggagatcc cgtacactgt ctggtatcgt 2220 gagacacctt cctattcgaa gttgaggccg tttggatgtg cagctctcac atacattgac 2280 aaagtggagc gacgaaagtt ggatgccaaa gcacgagagg caatctttgt gggttattcc 2340 agagagaaac gtggataccg tttcctggat agtaaaactc gcaaggcgtt ttacagtcac 2400 accgcggtct tctatgaaga gaagccaggc agggtgatag caggcacagc agattccgtc 2460 acacatgctg cgtccacggg ggaatatttt ggtctgaacg acagcactgt gcgggatctg 2520 gagcccattc tagatgaaat gcatgaagag gatgaagcca aaaagcgttg tgagaacaaa 2580 cgtcgagatg gcgaggccac cgacgaaaag acagaaaagt ctcagactgg tggggctgag 2640 ttgtgtgatg aaaataagag tgatgttgct ttgagcagca gaaagcgtgg tcgcatccat 2700 gagatgatga cagataaacc gcaaaagcgt gtaaggtttc atcgcagtaa gcggtgcccg 2760 gcaccggctg cagctctagt ggagcgtggt cctgagggac aagaggagga tgccacggcc 2820 aaagtgccaa agtctcacgt ggatgatgat gtggagcgca tagcagcgca tacacagcaa 2880 agttcactgg agcaagagcc actggaagat ggagaaagca agtcctatcc agtaacacgg 2940 agtggacgag tatccaaacc tccgcgatgg cttagtgaca gtgtgcatct ggcctataaa 3000 gagtcaacca atgctgatga cactcgtgga ctgacagtgg ccacaggaat agagtggaag 3060 aaggctcggg cccaaatgca gttagagatt gcgaaagaga gggcaatgga tgtgtggcaa 3120 gactttgttt gtcttactgc tagtgctatg tttgagccga ctagctataa ggaagccatg 3180 caaagtgatg aagccaagca gtggaaagat gcaatggatg ccgagtacga ggccttgctg 3240 aagaacggca cctggaagct ggtgcgaaga accaaggaca tgaaggtcct gaacaaccgt 3300 tgggtgtttc gagtgaagta tcatgcaaac ggagacattg acaggttcaa ggcaaggctc 3360 gtcatcaagg gcttcatgca gatttatggt attgatttct ttgaagttta ctcgcctgtg 3420 gtgcgattgg aaactttgcg catcttgctc acgctagcat ccatttggga ctacgaggta 3480 gaccagatgg acgtcaccac tgccttcctc aacggaggca tcgacgtgac ggtttacatg 3540 gagcagcccg aaggctatga agtgaaagga aaagaggatt ttgtgtgtgt tctgttgaaa 3600 agcctctacg gcttgaagca ggctcctcgc gtatggttca gattgctgaa ggatttccta 3660 gagagcgagg gctacacact aatgcagtgt gaggcatgcg tggcagtgaa ggctgtcgac 3720 gggtggctgg tgttcatctc tatctacgtt gacgacctga tactgtttgc gccgacaaag 3780 gccatgatga acgtcatgaa gcagatgctt ttcagacgct tcgtgatgaa agacttgggg 3840 ccgattcatt acattcttgg ctgggagatt acacgcaaca ggcaagaaag aacgatgttc 3900 atcaatcaaa agaagtatgc cgagaaagta ttgcagcgtt ttgacatggc caagtgtaat 3960 ggatgcagag ttcccagtga tgtgagttta aagttgtcaa agtcaatgtg tcctacaact 4020 aatgacgaac gagagctgat gaagactaag ccatatcgag cggtcattgg aagtttgatg 4080 tatctaatgc tgggcacccg gccagatttt gcatttatgg ttcgtgagtg cagtcagttc 4140 ttggagaacc caggtatttt acactggcgt gcagcgaaac gtggactgcg gtacctgaaa 4200 gagacagctg agtggggatt gtgtcttggt ggcgtgcagg aaaggcaaaa gttgacgcac 4260 caccttcagg cctttgccga tgctgacttt gcgaatcgtg ttgatgatcg caagtcagtt 4320 gcaggatatt tgacgcagtt ttgtggtagt acgatttcgt ggtgtagtca gacggagagg 4380 actgtggcat tgcacacgac ggaggctgaa tatatggcac taagtctgct agtgcaggaa 4440 gttgtgcatc tgcgccagat gttgagagag ttgaaagtga agcaagtgaa accctctgat 4500 gtgttcgtgg acaatgaaag cgcgaagaag ctcgcaaaaa accctgagtt tcacagtcga 4560 acgaagcaca ttgatgttcg tcatcacttt gtgcgtgagc gtatagagtt gaagcaaatc 4620 gatgtgaagc gagtacccgg cgttgaaaat gtggctgatg cttttacaaa gccactacca 4680 agggcgaacc ttgaacagca ccgcagcgct atgggtttga tttcgaagga gaccttcgag 4740 tccacgggtg gtcggcacag cgatgacaac cagtaggtgg ggc 4783 // ID Gypsy-4_PR-LTR repbase; DNA; PLN; 211 BP. XX AC AAQX01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PR_; KW Gypsy-4_PR-I; Gypsy-4_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-211 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000384; Positions 26785 26575. XX SQ Sequence 211 BP; 66 A; 49 C; 52 G; 44 T; 0 other; tgttgtagct gaagctacag cgtgtagcca ttgcaggggt tttgcccagc aacagctgca 60 ctgatcagga gttttgcaac cgatgcgaac acgagcccaa gcggttgggc aacggacgac 120 tttaaagaga gagctctagt agaactacaa cgagtagtga aaccagatga tcaatacatt 180 cacttctaca tttaccgagc gacaaacaac a 211 // ID Gypsy-8_PIT-I repbase; DNA; PLN; 5487 BP. XX AC AATU01003045; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PIT_; KW Gypsy-8_PIT-LTR; Gypsy-8_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5487 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003045; Positions 84959 79473. XX CC Positions [4351-4842] - Integrase core CC 'ACCTT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1968..3047 FT /product="Gypsy-8_PIT-I_2p" FT /translation="MKLELDVTEGDMMQVDLGYDQIVHRPRRPVEMSLQLP FT GFPLTTGTFQVMPVPEGKDIVLGMMWLREQNPVIDWSTGQIAPRINVENTQ FT TVKLRMPKTRPARWVAGQRRARIAQSREIYNYYRQHGHNGRFRRTKVISSN FT QFQQMLRRDKDIEAVFVINPHDSEKAERFKSQGWDALKDNPAYDTLRKYAD FT TVFRTELPNETPPVREGIEHEILLKPDTPPISVKQWRQSPDQKKTIQEWTK FT EMVQAGIIRPSTSAFCAPTFCVKKPVGWRIVHDYRQLNLATVLPPIPMPRK FT ENTFDAMAGSYWYSCMDLLWGYYQVKLRESDIHFTAFSTPDGLFEYLVTPM FT GLSGSPGTFNRLLQKVF" FT CDS 3067..5457 FT /product="Gypsy-8_PIT-I_1p" FT /translation="MRIYFDDIYVYTKSEDVDEHIAALDRVLRRCEEQKLY FT IKLSKCQFCVDEIPCLGDFVGRKGVRMDSDKVKIITDWPVPKTKKQMESFL FT GTTVYVSQFCKDFAQFAGPLHECIKGKRSRDAIELNEDQLRCFDELKKRLS FT SPPVLRLPDVIKPFGIRMDASNFAIGGVLFQKKGELEHPIAFTGRKMKPAE FT LNYPVREQELLAIMHALKAWRVYLLDKPFLVETDHKSIEMILTQKTANRRI FT ARGFNELAEFWPMFKWIPGETNVVADALSRNPEFEHKAAQVSLQELLDTAQ FT NREIVATMIANNVTVAQSAKKMYSWNKDLQGIVKKLKLGDNVPHYSLSDGV FT LYYQTGEDESPRLYIPDDEDLRNRVICENHNAVAAGHPGSYNTYVAVREKY FT YWPKMMKYIQRYCNTCEMCQRNKARQVKPPGLLQPLEVPRGRWIDILMDFI FT VSLPPSKDGCNAIMVIVDRLTKRAKFIATQTTDSAEDTAHVFMKNYVKDHG FT LPKTIVSDRDSKFTSKFWQAVISAMGTQHNLSSAFRPQTDGQTERTNRFIG FT DYLRGVVNPAQSDWDEFLHMAEFAYNRRVHSTIGMAPFEADLGYIPYMPDE FT VSLDPEFNKLEKAAKEFLLRQEVFLKVAQDRMSEAQERMKHYYDRNRLVQD FT FETGDMVLLDGKNMDIRHKGYAQSKKLAPRFIGPFPILKKVSRDSYELGLS FT QGLKLHPVFHTSLLKLYRKDQKRRQKVNKVVLADGTEGQLVEAVIGHRKYK FT GNPQYKIWWLGETKKEATWEPVENLAQIPGLIDLYWKSKKKENPFL" XX SQ Sequence 5487 BP; 1535 A; 1229 C; 1434 G; 1289 T; 0 other; tagtagcact tgtcgtgtca tgcttcgatt caagtagggc actcgtggtg gcatagccag 60 aagcgagttg tcctgaggtt attggtgcca gccacatagt ttgggaagca ctagatcaca 120 aagggtattg cctcagcacg aactgttacg ttcagtggct agttggtgtg gttgcgcact 180 agtgtggtac acacaatcgg aaactctttc tggtggtctt gggtctaacg ctttcacgtt 240 aagtggatcc ttatcccgca tcagagctta aaggagcgaa cgtccgatta gatactcact 300 ggttgtgctt gatctacatc cgttgctact gcatctgttt cagtgtgctt gtttatgggt 360 aagcgaaaga ctcgtcaacc cgaagatccg tttgtaaaca gcacaaagtc cttgactgat 420 cgacacaagc agctcgatca gcttcgtctg gacttgtggc taacaacggt caagcaactt 480 aagctcgtcc gcctgatccg aaacgaaatt ccggaatcta aggacgcagc cgcccggaac 540 gtcattcacg acttcagtga attgctcaag aaacgtatta agcaaacccc agaaattctt 600 gaaggatctt ttgatcactc catccacgta gacaagaaac gtagattgta gggaggaact 660 ttatatatcg gaaccttttt tcgcttcgtt taacttcggt atagggttct ggtatcttaa 720 aagacttgcg ctgagaagtc cagcttgaaa tggctcaaag aaggagtcgt gcagctgagc 780 gcccgtcacc gaaccctcgt cctcgtcaac agagccgtgt tagtgctccg agcgacgctg 840 aagctaccca acccacgatg cgaacaaatt caagatcgca agcgtcaaga gaaggggcca 900 gtgccaacgc acaggctgag tcagcctccc ctgctactgc tgctgctcag gatgcggctg 960 gacctgagac catgtccatg cagcagctgc tcgtatacat tacgcagcag caacagcagt 1020 atcaagctca gatgcaagcg caaatgcaag cccaaatgca acaagctaat gcgagattcg 1080 aatatctcgt tgccgctagg ggtgagcaga agaagaagga ccctccgatg tatgaaggaa 1140 agtatggtga agacattgaa ttgtggatct ttgccaccga gcagtactac gcaagcagac 1200 gtgagttaat ggaggcagac tcgtcaggtt tcgtgacgat aatctccagc agcttaggca 1260 agtcagtgtt gaactggtat cgcgctttta tagccgaatg tgagagagcg agtgtgaacc 1320 ccacgtggtc gttgtttaag caacagctgc gcacgcgctt tcgaccaaag gacttcgagt 1380 atgatcttcg cgagagaatg tttcgtctca aacagaccga gactattcac gagtatgtct 1440 ccaagtttca agacctgctg tcgcagacag aattgacgat cagtgagttg gagaaacgat 1500 tcttctttta aaacgggtta cgtgaagaaa cagcaaagaa gatcaaagaa gagagtccat 1560 caacgctaca agaagccatt gaaattgctt cgagcttcga gtttgcgcac tactccggga 1620 aacctcctcg agcaccttcg aagccttcaa aagagtcgtc ggactcgggg catcatccgc 1680 ctaaatcgaa acagcagaac aacaagcgtt acgaaaagaa aaaagggcaa agaccggtgg 1740 attggaagaa gacaagctac gtgcagaaat tggtgccagg gttggtcaca tttctccaga 1800 ttgtactcag ccaaaacgta cggaagcaaa ccggtacatg caggggcgca gtgtatgcga 1860 tcctagaggc tgaagctcga gcattcaaga cggaagacca agagaggccc gtcacgatat 1920 tcattgacaa cggcagtagc ctgaacggcg taactgagga gttagtgatg aagcttgagt 1980 tggatgtcac tgaaggtgac atgatgcaag ttgatctcgg ttatgatcag attgtgcatc 2040 gtccacgtcg gcctgtagag atgtctctac agttaccagg atttcccttg acaacgggaa 2100 cattccaagt catgcctgtt cctgagggaa aggacatagt tttaggcatg atgtggctgc 2160 gggagcagaa ccctgtcatc gactggagta ctggacagat tgcacctcgc ataaacgtgg 2220 agaacacgca gactgtgaag ttgagaatgc cgaagacacg tccagcccgt tgggtggcag 2280 gacaacgccg cgccagaatt gcgcagagcc gtgagatcta caactactat cggcagcatg 2340 gccacaacgg ccggtttaga cgaacgaagg ttatttcgtc caaccagttc cagcaaatgt 2400 tgcgtaggga caaggacatc gaagcggtgt ttgttatcaa tccgcatgac tcggagaagg 2460 cggaacgctt caagagtcaa ggatgggatg ctctcaagga caatccggcg tacgatacgc 2520 tacgtaagta tgcggatacg gtttttcgca cggaacttcc gaatgagaca cccccagtac 2580 gtgaagggat tgagcatgag attctgctca agcctgatac tccgcctatt tcggtaaaac 2640 aatggcgcca aagtcctgat cagaagaaaa cgatacagga atggaccaaa gagatggttc 2700 aagctggtat cattcgaccg agtacgtcag cgttttgtgc accgactttc tgtgtgaaga 2760 aaccagtcgg atggcgaatt gtgcacgact atcgtcagtt gaatttagct acggttctac 2820 cgcctattcc gatgcctcgc aaagaaaaca cctttgatgc gatggccggc agctattggt 2880 actcgtgcat ggacttactc tggggttact accaagttaa gctacgtgaa tcagatatac 2940 attttactgc tttttcgact ccagacggtc tttttgaata tttagtcacg cccatgggac 3000 tcagcggtag cccgggaacc tttaacaggt tgttacagaa ggttttttag ggatttacgt 3060 gacgtgatgc ggatctactt cgacgacatt tacgtgtaca ccaagagtga agatgtcgac 3120 gagcatattg ccgcgttgga cagggttttg aggagatgtg aagagcagaa gctatacatc 3180 aagctgtcca agtgccaatt ttgtgtcgac gaaatcccat gtttaggtga ctttgtcgga 3240 cgcaagggcg ttcgaatgga ctccgataag gtgaagatta tcacagattg gcctgttccc 3300 aagacaaaga agcaaatgga aagctttctg gggacaaccg tctacgtttc tcaattttgc 3360 aaggatttcg ctcagtttgc aggtcctttg cacgaatgta tcaagggaaa acgctctaga 3420 gatgcgatcg aactcaatga ggaccagctg cggtgttttg atgagctaaa gaaacgcttg 3480 tcatcaccac cggttctccg tcttcctgat gtcattaagc ctttcggtat tcgaatggac 3540 gcctcaaatt tcgcaattgg gggagtctta tttcaaaaga agggagagtt ggaacatcca 3600 attgccttta ctggccggaa gatgaaacct gcagagctga actacccagt acgcgaacaa 3660 gagcttctcg caatcatgca tgctctgaag gcatggcgtg tatatctgct agacaagcct 3720 tttcttgtcg aaaccgatca taagagcatc gagatgattc ttacgcagaa gacagcgaat 3780 agacgcattg cgcgtgggtt caatgagctc gcggagtttt ggcccatgtt caagtggatc 3840 ccaggagaaa caaatgtagt cgcagacgca ttatcaagaa accctgagtt cgagcataag 3900 gctgcgcaag taagccttca ggaacttctt gatacggctc aaaaccgtga gattgtggca 3960 accatgatag cgaacaacgt gactgtggca cagtccgcaa agaagatgta ttcgtggaac 4020 aaggacttgc agggaattgt caagaagctt aagcttggag acaacgttcc gcattactcg 4080 ctcagtgatg gtgttttata ctaccagacc ggtgaagatg aaagtccgcg actgtatatt 4140 ccggatgacg aagatctgag aaaccgtgtc atttgcgaga accacaatgc cgtagcggca 4200 ggccatcctg gatcgtacaa tacttacgtc gcagtacgag agaagtatta ttggccgaag 4260 atgatgaagt atatccagcg ttattgcaac acttgtgaaa tgtgtcagcg caacaaggcg 4320 agacaagtga aaccgccggg attacttcaa ccgctggaag taccaagagg tagatggatc 4380 gacattttga tggatttcat tgtgtcctta cctcccagca aggatggttg taatgccatc 4440 atggtcatcg tagatcgatt gaccaagcgt gcaaagttca ttgcaacgca gacgacagat 4500 agcgcagaag ataccgcgca tgtcttcatg aagaactatg taaaagatca tggccttccg 4560 aagacgattg tgtctgatcg tgactccaaa tttacgtcca agttttggca ggctgttata 4620 tctgctatgg gaacgcagca taacctgtca tcggcattta gaccacagac agatggacaa 4680 acggaacgta cgaaccgttt tatcggggat tatcttcgtg gagtcgtgaa cccagcccag 4740 agcgattggg atgagtttct tcatatggca gagtttgcct acaatcgacg tgtgcattcg 4800 acgatcggaa tggcaccgtt tgaagcggat cttgggtata ttccgtacat gcccgacgag 4860 gtttcgttag atccggaatt caacaagttg gaaaaagcag caaaagagtt cttactccgg 4920 caagaggtct tcctcaaggt agcacaagac cgtatgagtg aagcccaaga acgcatgaaa 4980 cactattacg acaggaacag acttgtccaa gacttcgaga ctggtgatat ggtgttactt 5040 gacggaaaga acatggacat ccgccacaag gggtatgcac agtcgaagaa gttagctccg 5100 agatttattg gacctttccc gatactaaag aaggtgtctc gagactcgta tgagctagga 5160 ctttcgcaag gattgaagct gcatccggtg ttccatacgt cactattgaa gttgtaccgc 5220 aaagatcaga agcggaggca aaaggtgaat aaggttgtgt tagccgatgg taccgagggg 5280 caactcgttg aagccgtcat tggacatcgc aagtacaagg gaaatccgca gtacaagatc 5340 tggtggcttg gtgaaaccaa gaaggaagcc acttgggagc ccgtagagaa tctagcgcaa 5400 attcccggac tcatcgacct ctactggaag tcaaagaaga aagagaaccc ttttctctag 5460 gagaggctct tcttcgaagg gaggtca 5487 // ID Copia-10_PSo-LTR repbase; DNA; PLN; 289 BP. XX AC AAQY01000137; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PSo_; KW Copia-10_PSo-I; Copia-10_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-289 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000137; Positions 20099 19811. XX SQ Sequence 289 BP; 81 A; 64 C; 76 G; 68 T; 0 other; tgttagaatg aggttcccga gagaccgtaa aggctctgta aaggcctgag ggtaacgtgt 60 acccgctggc attaaggcgc tctcccattg gttaagggag agccaatcat aggactacaa 120 aactagccaa tctgggggcg ccctgttggc gaccgctcgt gcgatgatgt ttgacggcat 180 tcggagagag ctcacttctc cttttgccaa cgactgagca ctagtctaat agagggcatt 240 aagagataaa taaagcttaa gtttgaccaa ccaaaactga gttttaaca 289 // ID Gypsy-5_PR-I repbase; DNA; PLN; 5737 BP. XX AC AAQX01000569; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PR_; KW Gypsy-5_PR-LTR; Gypsy-5_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5737 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000569; Positions 105112 110848. XX CC Positions [2729-3184] - Reverse transcriptase CC Positions [4463-4957] - Integrase core CC LTRs are 92% similar to each other. XX FH Key Location/Qualifiers FT CDS 1181..3235 FT /product="Gypsy-5_PR-I_1p" FT /translation="MSDIDKVMHFQKGLLTDIKQEVKLRQFSTTTEAISFA FT LMYDHTHFVSSRHQSSQRRSSPQLRQRIEEQPTSMEIGNARIISREECMRR FT NLCLYCKEPGHRLADCRKRQARNSSRDPSRPPHGRSSFRANQNSFRHVVEA FT EDGPDGEEDFVDDNDNLVEVTDSLQLNMVSVDSGAPSKRELRRFEGMVNDQ FT VVRVLIDSGAERNIVRPGLAQHFVDAAKVTAEHFDGTTTPARTAHRCCETL FT SFDGRDFADVSLFEWEVSSNQDVILGHPWLVQFNPIISWQTGVMRIPRPRL FT VLDARSINDSLDVAPPALAAVEVTSKFLQHPLPSNLRQQLDDHVKAGYFIC FT HWVQAPLRHLVVGRRLTARARTENEAATSLCVISAAQFATKVKAETYVELY FT HVTVKEPPNVKTVPPQLQAVVEEFADVFPAELPPGLPPQRSIEHEVIVKPG FT AKPSNRAPFRLSKAEQEALDIFVAELLKKNWIEVSDSPWMSNIFGVPKKDP FT TIGKFPSRLEWLHSNNPHMAIRWVIDYRLVNAASEVAKIPLPHIEQLFDRM FT VGAVAFTILDLASGYHQMRMAPTSKQYTAFRTNQEIYHWNVAPMGLAGMPA FT TWTRLMHNVLSHLAFVVVYLDDICIFSRSMADHVEHLQRVCEVLRQHQLYA FT CPDKCDFGQCSVDFLGHTISVDGLHVDPCDRRVDGA" FT CDS 3776..5737 FT /product="Gypsy-5_PR-I_2p" FT /translation="MNVIADALSRPPGPSSSLGEGQDDNESKPVTVSLCAA FT CRSSPTCTDIRQAASRRTKTTEKIRSIPTRDQDVILAVKKPVAELHDVGTA FT QLRMRVHAFSTAGSTVISSLQLDTQTKKAFQKAYDRDPEFKHLWKYGRTSE FT EYEVVHGLVYLKSNDNLRRLCVPNNRKLRVDVIHNAHDAAIMAHPGIRRTQ FT LAAAQWYFWPSMDLDIKSDVQSCESCMRYKSSMGRKTGKLQPIPLPAACWE FT VVSTDFITHLPVSDGFDAIMVVVDKLSKRPVYIPTHTTATAEDTAKLFFNN FT VIRYYGIPSTIISDRDPKFTSRFWTALVNLMMIKAAMTSAHRAQADGQTER FT QNRTLEDSLRCSISYHGNDWNEHLPMIEYAHATLVSSSSKLSPFFVDTGRK FT PTYLLDTGADAASVPHSRVEHASRFVQHRQEVIERARKNLLDAHATQKKFY FT DKRRAENPFKVGDLALLSTQDLKISHATAETTLRSRKFIPRFIGPYAILEI FT RGNVALLDLPANLKSLSPRFNIDKLKVYTSNPDRFDGRMISKSTPVIFDDD FT GEPLHVVEALIKRRTFNRQPEYLVKWYGLPHHENTWERERDIKHVSRWQAL FT LKDLCRRSQARACGILFMRGFPVMFLTTRDYGTTNFNFDDFILKVLGLDQL FT GGGGE" XX SQ Sequence 5737 BP; 1264 A; 1692 C; 1558 G; 1223 T; 0 other; cttggtagca cttacggccc agcgcacgct tcttcccgtc cggttccagt cgctccgtcc 60 gtccgatctt cagctcgcgt cgcctaggca cgcctccgtt cctgccaggc cgtacaccac 120 gcttgtacgc cctcgccttc ctcgtccgtt cagccgcgcg tgtgcccgct catccgaccg 180 ctccgctctc tgtcggcttc cgccacgccg ccgttttctt ttctggggga gagaatccat 240 ctgcggagac ccgccttgtc acacgcattt ttcgtgtcga ccgctaattg gcccgtagcg 300 accaatcgcc atcagcatcg ccggtgctcc gcttctccga ggttcttcgt cgacctcact 360 cagtcggcgt ttcctctcac cagaagtacc aggtacctcg cacccggcct tcctagttgg 420 cgtcgccagg ggcgtttaag agaggactgg ggtttcgggg ggtgtaccag aaaaagggta 480 aagcgtcggc attgggttcc tcatgctttg ccggaagcag cgctccaggg agtgtctgtg 540 acttcgctcc aactttgatt gatttggctg aggagcttac gcgccccatt catctaaggg 600 acgacgtgct agcgtaggcg cagtcatgga cgaacaaccc atgcagcacg gtgacagcat 660 gcagcaatga tgcacgagcg gcagcaacag tttataacgc agaccgccga gctccagcgt 720 cagatggcag caaccttgga gcagcaatag gcgccacctt agcagcaaca acagcagcag 780 agtgagtctc ctgccgtcaa cacgcgataa taccgagctg agggcatcac catgcccaag 840 tttttgggaa ccaaagaaga cgacgtcggt gactacatgt tcagcgccaa gctctacttc 900 gagtcgaaga acatcaagta tgggtcagag gcgcctcaac agcgaccgct gtctcttttg 960 gtagcaaacc tgaaagggcc tgctgcggcg tgatatcgtg agtacgtctc ccacgatgaa 1020 cacttcttgc actctgttac gcagtttgaa gaacttctga cgagcgagtt cacagcgccg 1080 gatcgccaag aacacttgcg cgaccagctg ctttgcctgt gccagaggaa cttctcgtgt 1140 ctcgaagact acgtcgccgc tttccgaggc atcatctgca atgtctgaca tcgacaaggt 1200 gatgcacttc cagaagggtc tgttgactga catcaaacaa gaggtgaagt tgaggcagtt 1260 cagtaccacc acagaagcaa tctcgttcgc gctgatgtac gaccacaccc acttcgtctc 1320 ttcacgacac cagtcgtcgc aacgtcgctc gtctccgcaa ctcagacagc gcatagagga 1380 gcaaccaact tcaatggaga tcggcaacgc tcgcatcatc tcccgtgaag agtgtatgcg 1440 gcgaaacctg tgtctctact gcaaggagcc tggtcaccgt ctagctgact gccgcaagcg 1500 tcaggctcgc aacagctctc gtgatccttc ccggccacca cacggacgca gctcgttcag 1560 agcgaaccag aactcgttcc gccacgtggt cgaggccgaa gacggccccg acggcgaaga 1620 ggactttgtt gacgacaacg acaaccttgt tgaagtcact gacagcttac aactcaacat 1680 ggtgtccgtt gacagcggag ctccgtccaa acgcgagcta cggcgctttg aagggatggt 1740 gaacgaccaa gtggtgcgtg tcttgatcga cagtggagca gaacgcaaca tcgtgcgccc 1800 tggcctcgct caacacttcg tggatgcggc caaagtgact gcggagcact tcgacggtac 1860 tacgactcct gcccgcacgg cacaccgctg ctgcgagaca ctgagctttg atggcagaga 1920 cttcgctgat gtttcgctct tcgagtggga ggtatcgtcg aatcaagacg tgattctcgg 1980 ccatccgtgg ctagtgcagt tcaacccgat catcagctgg caaaccggtg tgatgcgaat 2040 cccacgaccg cgtctcgtgc tggatgcccg ctcgataaac gacagcctcg acgtagcccc 2100 tccagcattg gctgcggtgg aggtgacgtc aaagtttctt cagcatccac tgccctcgaa 2160 cttgcgccag cagctcgatg accacgtcaa ggcaggatat ttcatatgtc attgggtcca 2220 agctccattg cgtcacttgg ttgtcggccg tcgcctcacg gctcgggcaa ggacggagaa 2280 tgaagcagcc acctctctgt gtgtcatttc agccgctcaa ttcgcgacga aggtcaaggc 2340 tgagacatac gtcgagctgt atcatgtcac ggtcaaggaa ccgcccaacg tgaaaaccgt 2400 tccgccgcag cttcaagcag tggtagagga attcgcggat gtttttccag cagagcttcc 2460 accaggttta ccaccacagc gatcgatcga gcacgaagtc atcgtgaagc caggcgcgaa 2520 gcctagtaac cgagcgccat ttcgtctgtc gaaggccgag caggaagcgc tggacatctt 2580 tgtggcagag ctcctgaaga agaactggat cgaggtgtca gattctccat ggatgtccaa 2640 catcttcggg gtgcccaaga aggatccgac tatcggcaag ttcccatcgc gactggagtg 2700 gctgcattca aacaacccgc acatggcgat tcgatgggtc attgactatc gactggtgaa 2760 cgctgcctcg gaagttgcca aaataccgct gccccacatc gaacagctct tcgatcgcat 2820 ggtaggagcg gtggcgttta cgattctcga cctcgccagc ggctaccatc agatgcgcat 2880 ggcccctacg tcgaagcagt acacggcgtt caggacgaac caagaaatct atcactggaa 2940 cgtcgctccc atgggtctgg ccgggatgcc ggccacgtgg acgcgtctga tgcacaatgt 3000 gttaagtcac ttagcgttcg ttgtcgttta cctcgatgac atctgcatct tctcgcgctc 3060 gatggcggat catgttgagc atctccagcg ggtgtgtgaa gtgcttcgtc agcaccagct 3120 gtacgcatgt cccgacaagt gtgatttcgg ccagtgctct gttgattttc ttggccacac 3180 gatctcggtc gacggtttac acgtggaccc gtgcgatcgc cgagtggatg gagcctagca 3240 atatcaagga tctccagcgg ttcttagggc ttgttggcta ctaccatcgg ttcattcacc 3300 gctttgcgac gctcgtacta ccgctgagcg cactggtcaa gatggacgtg ccgtgggcat 3360 gggatgacac gctgcgcctg tccttcaatg ccatcaagct aacgctccag caccccccgg 3420 tacttcgcct ccctgacttt gacaggccgt ttatcgtgac aacggacgca ggccatgctt 3480 gcactggtgg agtactgtcc cagctgcacg atggcagtga tattccggtg gcgttcttca 3540 gcaagaagct cggccctcat gagctgaact ggccggtcca cgagaaggaa ctgtttgcca 3600 ttaagcaagc cctcacccgt tggcgtcact acctccatgg gtttcgtttg aagtgtacac 3660 cgataactcg gcgtgcaagt ggtttctgca acatccgcgc ctgtccggtc gactcgcacg 3720 ttggctcgac ttctttgcgt ccttccagtt cacgctgcac catcgcccag gcgctatgaa 3780 cgtcatcgct gatgccttgt cgcgcccacc tgggccttca tcaagtctgg gggagggcca 3840 agatgataac gagtctaaac cagtgacggt ttcgctctgt gcagcgtgtc gttcgtctcc 3900 gacgtgtacg gacattcggc aagcggcctc gcgccgaacg aagacgacgg agaaaatccg 3960 aagcatacct acgcgtgatc aagacgtgat ccttgccgtc aagaagccgg tagcggaatt 4020 gcacgatgtt ggcacggctc agctgcgtat gagagtgcac gcattctcga cggcgggtag 4080 cacggtgata agctcactgc aactggatac ccagacgaag aaggcgttcc agaaggcgta 4140 cgaccgggac ccagagttca aacacctgtg gaagtatggc agaacgtcgg aagagtacga 4200 agtcgtccac gggttggtct acttgaagag taacgacaac ttacgtcggc tttgtgtccc 4260 caacaaccgg aagctacgcg tcgatgttat tcacaacgcg catgacgctg ctatcatggc 4320 gcatccaggc atccgtcgca cgcaacttgc tgccgctcag tggtacttct ggccgagcat 4380 ggacctagac atcaaatccg acgtgcagag ttgcgagtcg tgcatgaggt acaagtcgag 4440 tatggggcgc aaaaccggaa agctccagcc gatcccattg ccagcggctt gctgggaggt 4500 cgtctcgacc gacttcatca cccatttgcc cgtgtctgac ggtttcgacg cgatcatggt 4560 tgtggtcgac aagttgtcga aacgaccagt ctacatcccg acgcacacta cggcaaccgc 4620 agaggatacc gccaagctgt tcttcaacaa cgttattcgg tactacggca tcccatcgac 4680 catcatctcg gaccgagacc caaagttcac gtcgagattc tggacagcac tggtgaacct 4740 gatgatgatc aaagcggcga tgacaagtgc ccaccgagct caagccgacg gtcaaaccga 4800 acgtcagaac cggaccctcg aagactcgct gcggtgctct atctcgtacc atggaaacga 4860 ctggaacgag cacttgccga tgattgagta cgcgcatgca accttggtgt cgagttcctc 4920 aaaactgtcg ccattcttcg tcgacacggg taggaagccc acgtatctgc tggacactgg 4980 tgcggacgcg gcgtcggtgc ctcactcccg tgtggagcat gcgtcgcgtt ttgtgcagca 5040 tcgccaagaa gtgattgagc gtgcgcggaa gaatcttttg gacgctcatg caacacagaa 5100 gaaattctac gacaagcgcc gcgcggagaa tccgttcaag gtaggagacc tcgcgttact 5160 ctccacccag gacctgaaaa tctcccatgc gactgcagag acgacgctac gctctcgcaa 5220 gttcataccg cgcttcatcg gaccgtacgc catcctggaa attcgaggca acgtcgcgct 5280 gctggatctg cctgccaatc tcaaaagctt gagtccacgc ttcaatattg acaagctcaa 5340 ggtgtacacc agcaacccgg accgcttcga cggtcgtatg atctccaagt cgactccggt 5400 gatcttcgac gacgacggtg agccgctaca tgttgtcgaa gcattgataa aacggcgtac 5460 attcaaccgt caacccgagt acctggtcaa gtggtacggt cttcctcacc acgagaacac 5520 gtgggaacgc gagcgtgaca tcaagcatgt cagtcgctgg caagcactgc tcaaagatct 5580 atgccgccgc tctcaagcac gggcctgtgg aattctcttc atgcgaggtt tcccggtaat 5640 gttccttaca acgagggact acggtaccac caacttcaac ttcgacgact tcatcctcaa 5700 ggtgctagga cttgatcaac tcgggggggg gggggag 5737 // ID DNA-4N_PPa repbase; DNA; PLN; 266 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-4N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-266 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1015-1015 (2010). XX DR [1] (Consensus) XX CC Elements are ~80% identical to the consensus. TIR is ~27-bp long. XX SQ Sequence 266 BP; 80 A; 23 C; 95 G; 68 T; 0 other; ttaaaatgac ccacccattt actaaattga tccacctatt gtggagaaca agggggaatg 60 aggggggttg ggatgagagt tggaaacaag ggaaggaata gagaggttgg gatgaagaag 120 gctggaaatg gagggagcag gggttgggaa caaggggggt ggagatgagg gccatgattg 180 taatgatggt ttttggagat gatccatttt tctaatgatg gttacaatag ggtgggttga 240 tttagtaaat aggtgggtca ttttaa 266 // ID Gypsy-26_PIT-I repbase; DNA; PLN; 5149 BP. XX AC AATU01001484; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-26_PIT_; KW Gypsy-26_PIT-LTR; Gypsy-26_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5149 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001484; Positions 59603 54455. XX CC Positions [3587-4102] - Integrase core CC 'ATGCA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 147..3275 FT /product="Gypsy-26_PIT-I_2p" FT /translation="MSKRRVVSADLNDDEESYQHSSVVPVPIFAPILPPKL FT SSISHEALVKWKKRRVEYEAKMRARCRSSGEDYNLVTQGVKESFDLNLLST FT FCSLRLRKDVADVTEDQLIAEVTALLGKVKNDDLPDIKALFARELQMDLKE FT TDVDARVLSYFQRFAEIVLEHGLEEVFSGIDGETEKCKRLMSSLAPPVLKE FT DVKNAVRWTHKEAGRSMQELYTLVYEKAVQHERHFQQNKRMRLMVRDKSTQ FT SKSAKDTGKAAVQSKKAANTEPEKKKFKQTNAERKVEKKTDKKKEKQPASR FT KEPPSPCPKCQEMHWLSDCTKATEAEKVVLRGKLREASKARKSRTKRLKRL FT MPSTSRTVTINGVLDLPCCPDTGSDHTVISRSQWKSLLEVDPTAPEIPLDT FT PVRSLAYGSHPVAATKKALLHVLIHTAAGPVQLAETVPCLIMDVDDDEFII FT GRDLLTSLGIDVDRQLEQLASHVDDETSGDPFKLEADELPANPIHVASDEE FT VRAAVEVLIERALKNGFPPDKVDKLRVIVHMYDVWRLELRDDPPARVPPLE FT VRLKEGAKPCKCKPRKYPPHVRQFLREFNTMLVELGWIYENPTSRWASPVL FT PVKKSQELMDMRQTTDYREFNSRTDIMAAVMPILSLVMENPRGNKHFGLFK FT FIKGFWQLPLAEFCQEWLSYMTDEKIYTPRRVPQGCGDAAIYFQKTMEKCF FT ATLLYKHLLVWIDDLLLYAEDIDTYLEKLKELFSLLDEFGLKLSVKKSSLY FT QQDVKWCGKFIDANGVRHDPARIETLCAMPYPSTAGELQQFLCATNWMRES FT LIDYARQVSPLQHKLDEALAKTRRTKRAAAGILIELSANEKATFDRVKAML FT ASSATLAFPDDSATTCLLTDASDIGWALIVTQIKGYNPNVPVQDQQHQLVE FT CLSGTFTGSQLNWTVIEKEAFPIAFACDKLDYLLLRPQGFRLFCDHRNLIH FT VFAPDEHVKKHVKGKLLRWALKLMNYNYVIEHIAGPQNVWADMISRWAGNH FT ATGTATIMRIRSPSTAPQQESTTEATELSIFGVSPSG" FT CDS 3662..5026 FT /product="Gypsy-26_PIT-I_1p" FT /translation="MGDGFGDSKYILVLKDHASHFCELVTADTADSAVTVE FT AFLDWHSRFGLPPNWISDQGSHFKNEVVSELSRRLRTQQEFTPAYCPWING FT SVERVNRDILQVIRTMILEYKIAHRDWVYLIPMVQSSLNHTAVPSLGNRAP FT VELFTGLPCPTPLREFYLPSTGEFKEVPTSDKINGFLDDLRNSIQAMHKVV FT EDQRMKQRMLNKKRERGENIVNFTEGDYVLRSRVDEKRSNKLLVTWVGPYR FT VERADAHSFPIKHLITGAVLDVHASRLKFYADSSLDVTEELLEHISSQGIV FT LAIEKFKSHRWNTAISDFEILVQWKGLEAIEDSYEPLASLARDVPILVNQY FT VAAADQELKAHWQRATTAGETAQQGRTVATETVRPTDKSRRRSRRRRPLRL FT TTNVQIPDRSLPAAVVPQMTGVELGSDNNQPTTNTGESVSRRTRSRTAGVN FT RQVTLTSTGE" XX SQ Sequence 5149 BP; 1344 A; 1234 C; 1365 G; 1206 T; 0 other; aagaattctt tagtgggtcg tactactcca acaacgtagt actcgacttg ctagccaaat 60 tgcaatcttc actacggtta tcggtcgtct tctctgatca agtgtcgacg cctactgtga 120 aagaccaagc gtaccactcg ctcgtcatgt cgaagaggcg tgtggttagt gctgatttga 180 atgatgatga ggagtcctac caacactctt cagtggtacc agtacccatt tttgcaccca 240 ttctaccacc aaaactgagc tctatttccc acgaggcatt ggtcaagtgg aagaagcggc 300 gcgtcgagta cgaagccaag atgagagccc gctgtcggag ctctggggaa gattataacc 360 tggtgacgca gggagtaaag gagtcgtttg atttaaacct cctgtcgacg ttctgttcgc 420 tgcgcctccg caaagacgtc gcagacgtta ctgaagacca actcatcgct gaggttacgg 480 cgctgttagg caaggtcaaa aatgatgatc tacctgacat taaggcgctg tttgcgaggg 540 aactacagat ggatctcaaa gagactgatg tagacgcccg cgtgttatcc tacttccagc 600 gttttgctga aatcgtcctc gaacatgggc ttgaagaggt tttttctggc attgatggtg 660 agactgaaaa gtgcaaacgc ctcatgtcaa gccttgcccc tcccgttctg aaggaggacg 720 ttaagaatgc cgttcggtgg actcataaag aggctggtag gagcatgcag gagctataca 780 cgctggttta cgagaaggct gttcaacatg aacgccattt ccagcaaaat aagcgaatgc 840 ggctgatggt gagggacaaa tccactcaat ccaaatctgc gaaggacact gggaaggctg 900 ccgtccagtc gaagaaggct gctaatactg agcctgagaa gaagaagttc aagcagacga 960 atgctgaaag gaaggtcgaa aagaagactg acaagaagaa agagaaacaa cctgcttcgc 1020 gtaaagagcc accttctcca tgcccaaaat gccaagaaat gcactggctc agcgattgta 1080 cgaaagcgac tgaagcagag aaggtcgtac tacgtgggaa gcttcgtgag gcgtccaaag 1140 caagaaaatc tcgcacgaag agattaaaaa ggctgatgcc gtccacttcc cgtactgtga 1200 cgattaatgg cgttttggat ttgccctgtt gcccagatac tggctcagat cataccgtga 1260 ttagccgttc gcagtggaaa tcattgcttg aagttgaccc aacggcgccg gaaattcctt 1320 tggacacacc ggtacgcagc ctagcgtatg gttctcaccc ggtcgcggct acgaaaaagg 1380 cactgctaca tgttttgatt cacacggctg ctggaccggt acaactagcg gaaactgtgc 1440 cgtgcctcat catggatgtg gatgatgatg aatttatcat tggacgagat ctgttaacgt 1500 ctttaggtat tgatgtggat cgtcaattgg aacaacttgc ctctcacgtg gatgatgaaa 1560 ctagtggaga ccctttcaag ttggaagctg acgaactccc tgcaaatccg attcatgtgg 1620 ccagtgacga agaagttcgt gctgcagttg aggttctaat agaaagggcc ttgaagaatg 1680 gatttccacc ggacaaagtg gataagttgc gagtgattgt acacatgtac gatgtgtggc 1740 gtttggaact ccgtgacgat ccacctgcgc gtgtcccgcc gctcgaagtg cgtttgaagg 1800 agggggctaa gccatgcaaa tgtaagcccc gcaaatatcc tccgcatgtt cgccaatttt 1860 tacgggagtt taacactatg cttgttgaac taggatggat ctacgagaac cctacaagcc 1920 ggtgggcaag ccccgtacta cccgtcaaaa agtctcaaga gctaatggac atgcgtcaga 1980 ctacggatta ccgcgaattt aattcaagaa cggacattat ggctgccgtg atgccgatac 2040 tttctttggt aatggaaaat ccacgtggaa acaaacactt tggacttttc aaattcatta 2100 agggtttctg gcagctacct cttgctgagt tctgccagga atggctttcg tatatgactg 2160 atgagaagat ctacactcct cgacgtgtcc cccaaggctg cggtgatgct gcgatctact 2220 tccagaagac aatggagaag tgctttgcta cactgctcta caaacatctt cttgtatgga 2280 ttgacgatct gttactttat gcagaagaca tcgacacgta cttggagaaa ctgaaggagt 2340 tgttttcact attggatgag tttggcctga agctcagcgt gaagaagtcc agtctatacc 2400 aacaggacgt gaagtggtgc ggcaagttta ttgatgccaa cggtgtacgt cacgaccctg 2460 cccggattga aacactctgt gcaatgccat atccaagtac ggctggggag ctgcagcaat 2520 ttctttgcgc cacaaactgg atgcgcgaga gtctcattga ctatgcccgt caagtttctc 2580 ctcttcaaca caaactggac gaagctttgg cgaaaacccg ccgtacgaag cgagcggcag 2640 ctggaatttt gatcgagtta agcgctaatg agaaggctac atttgacaga gtgaaggcaa 2700 tgctggcttc atctgctacg ctcgctttcc ctgatgattc agcaactacg tgcctgctaa 2760 cagacgcatc ggatattggc tgggcgctaa tcgtgactca aattaagggc tacaacccta 2820 acgtccctgt ccaggaccag cagcaccagc ttgttgaatg tttgagcggg acgttcactg 2880 ggagccaact caattggaca gtgatcgaga aagaagcgtt tccaatcgct ttcgcctgtg 2940 acaaactaga ttacttgctg ctgagacccc agggctttcg attgttttgt gaccatcgta 3000 atttgatcca tgtcttcgcg ccggacgaac atgtcaagaa gcatgtgaaa ggaaaactgt 3060 tacggtgggc tctaaaactg atgaactaca actacgtgat tgaacatatc gctggacccc 3120 agaacgtttg ggccgacatg atcagcaggt gggccggaaa tcacgctact ggcaccgcca 3180 cgatcatgag gattcgatcg ccttcaactg cacctcaaca agagtcaact acggaggcga 3240 cggagctgag cattttcggc gtttcgccct ctggatgatg ccaattttgt gtggcctacg 3300 ttttcagaga tttcgctggt tcagtcccga tacgaacccc cacaaggcgt cgagcgtact 3360 gaggctggtg ttcttgcgct caataatcgg gtctggattc ctgtagaggc gaaggacctc 3420 atcacgcggt tgttcatcat tgcacattgt ggcgcacaag gccaccgcgg aattgccgcc 3480 atggtggaac atattcgacg tttgtttgcg ctggagaacc tgcgccccct agcgtccact 3540 ttcgtccgcc agtgtcgtct gtgcctgcat tcaaaagggg gggaatatca tccccagacc 3600 ttggggtgaa acgtttgaat gcagtgaacg caatggtttg ctacattttg atttcctttc 3660 gatgggtgat ggctttggag actccaagta catcttggtg cttaaagatc atgcctccca 3720 tttctgtgag ctggtcacgg cagacacagc cgacagtgca gtgacagtcg aagcgttcct 3780 tgattggcat tctcggtttg gactgccacc gaactggatt tcagatcaag gctcccactt 3840 caaaaacgaa gtggtgagtg agctttcacg ccgcctgcga acgcagcagg agttcacgcc 3900 tgcctattgc ccgtggatca acgggtcggt agagcgcgta aacagagaca tcctccaagt 3960 gatccgaaca atgatcctgg agtacaagat tgctcaccgc gactgggtct acttgatacc 4020 aatggtacaa tcgagcctca accacacagc agtgccatcg ctgggtaata gagcccccgt 4080 tgagttattt actggattac cgtgtccgac acctctccga gaattttacc tgcctagtac 4140 tggggagttc aaggaggtgc ccacaagtga caagatcaat ggttttctcg atgacctgcg 4200 caacagcata caagccatgc ataaggtggt tgaggatcaa cgcatgaagc aaaggatgct 4260 gaacaagaaa cgagaacgtg gtgagaatat tgtgaatttt acggaaggcg actatgttct 4320 acgctcgagg gtggacgaga agaggagtaa taagttgctt gtgacgtggg tgggaccata 4380 tcgcgttgaa cgtgctgacg cacattcatt cccaatcaaa cacctcatca ccggggctgt 4440 gttggatgtc catgcctcaa gactgaagtt ctatgcagac tccagtctgg acgtcaccga 4500 ggagctcctg gaacacatct cgtcgcaggg aatcgtcttg gcgatcgaga agttcaagag 4560 ccacaggtgg aacactgcaa ttagtgattt tgaaatcttg gttcaatgga aaggactcga 4620 ggccattgag gactcctatg aaccactggc cagtttggct agggacgttc ccatcctagt 4680 gaaccagtac gtggctgctg ctgatcaaga gctcaaggca cactggcagc gcgcgaccac 4740 ggctggagaa acagctcaac aaggacggac agtagcgaca gagacggtaa ggccgacgga 4800 caagagtcgc cggaggtcca ggcgtcgacg accgctgcgt ttaacaacaa atgttcagat 4860 acccgataga agtctccccg ctgcagttgt gccacagatg acaggggttg aacttggatc 4920 tgacaacaac caaccgacta caaacactgg tgaaagtgtg agtagacgta ctcgctcacg 4980 aactgctgga gtcaacagac aggtgaccct caccagcacg ggagagtaaa catccaaggc 5040 tgaagcgaag agctgctcta tgatcgacca gggccagaca tagatctgac tgccaaggct 5100 ataatagggg tagtcgaagt tcggccgcgg aatcaagctt tgggggctg 5149 // ID Gypsy-31_PIT-LTR repbase; DNA; PLN; 532 BP. XX AC AATU01001395; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-31_PIT_; KW Gypsy-31_PIT-I; Gypsy-31_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-532 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001395; Positions 29241 29772. XX SQ Sequence 532 BP; 109 A; 129 C; 175 G; 119 T; 0 other; tggttctggc ggccaccgtc ttgggcacgg tgagttccgt taccctcctc cgctcttttc 60 gacggccgac cagattcgtg tgggccacgc tttcgatgaa gccatgcagg gccacgacgg 120 agtcgctgag aagttgtggg ccggcctcgg tctccgtggg acaagcgcgg ctagagcgta 180 cggtccccgt ggatgacgag gacggaagtc atgggggacc ggagctactg aaggacagtg 240 tatcttcgcg gtgaggcggt ggggtgagcg gtaccgcctc gctgtcgtgg tgtacaaaat 300 cgtgggcgat gattgcgaaa cggtgcctga cagcgggaac gaggaccatg gaggacgaag 360 tgcgggtcgc aaggaagaag gtaagaggtc agtcgtgaat tttccttgaa gacaacaagc 420 agaaaagaat ttgtgttgac atttgtcttt agcatgttgc ttctgtttat atcttcgtac 480 tgctctactt ctatacagcg tcgaccgtcc catccaagga cggctcgcga ca 532 // ID Gypsy-19_PIT-I repbase; DNA; PLN; 7158 BP. XX AC AATU01001819; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PIT_; KW Gypsy-19_PIT-LTR; Gypsy-19_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7158 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001819; Positions 92273 85116. XX CC Positions [6021-6356] - Integrase core CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 922..1950 FT /product="Gypsy-19_PIT-I_1p" FT /translation="MVGNKLQDNAASWWVQMNQELRDEDKTWTHLKAALMR FT RYGERPDQAMAEWRVYQRMMWPGETFADFAAGLRAVTGQNHVSEHTLLAQF FT YRNLDRTTRMLVKQEPAPTTLEQAVDKATAIDDPIENVARGMVNIGRPCAM FT ATNAFAVPMDGTTGRVAIIPGVGTGAVSMADMLAAQTGTEGAEIAYFTNPQ FT GVYNKFTGTWDVPEGRFWNGRYWQPSTRNQTRTRSDNRSSGKRHGGYSSKK FT AKVGLLQVATEASKESEPEEAAPSPKQKKRKASVRQATGRDRPTTVNSDER FT RSWEPIRCFACGGEGHMARECTNAEAKARNDAYLAARAEAEAKKAENEKRA FT " FT CDS 6039..7157 FT /product="Gypsy-19_PIT-I_4p" FT /translation="MEEVVLRFGPFRELLTDGAPELAGKVIESLVMMLQAR FT QTNRVPYRPQMIGLVERFHRSWKDCVATYMSGEQQNDWDLWVKFAEYAYNL FT APHTTVRLTPNKLMMGRRLRAPNELLSENEVTEAGDLTAYHVRLVGAMRRS FT HVYAEEARQKEQERQARYYNRKVRQRRTFAVGDRVWVYNPPRGAKATKFVH FT QWMGPMRIVEPAGYENFVLRREDKTGTPETMIAHSSFLVSYYYPTAGLEKA FT AQDIDDEVLYEEQVYDEVEDGGAVDYDEETGAPVFAATAGRHTGATGGDTK FT KRSRAVGTERKTFGASGQLVELRRRRRRNRAGQYVLEYELRGSNGERGAKR FT NVERRWVSAEEYDKLLDADRVVEDPDDEEV" FT CDS join(2154..4445,4449..5480) FT /product="Gypsy-19_PIT-I_2p" FT /translation="MVTAALYYVRPVAEEGGEATMVDDGVETEEGGERQMP FT TDDAVTEEGGERRMSTDDAVTEEGGERRMLTDDAVTEEGGKQGENGGTSDG FT DTNNAEDQEPAETVQEVDAATTEVSVAQVRAVRRNAKKEMKRRRVLNAQRR FT ARTANSAGDEVDAAIATLDAAQLDRRRRQSEVARASLAQRRQRYRGMQVYS FT MDERARARLVQRTQEPAAGATLDPDVEADVLAEDGLPTATMMVEGERLPVK FT LDSGARYSVAGVDWMLRSEKLREPAPVDLVEGIGGFALDVLGLWAFEMRNV FT FGQTITVKACIIDGCTDEFLVGVDSLKQNKATMDLTRNEVRYYTRNEQVVI FT PFRTDDDESGAKVAAVRLMRQTRLRRSAVTPVEVSVAASDGTEGLFIPTQS FT CGAVMMATTLTRVKNGKALVPVVNTHGGRVRLPDKRELGTWIPLEKSIQVL FT EMGGAVDRDKLDEWLATLGDSETPLNNEDVVVIKTEDDGARALILQLLRAY FT RKVSEDTGDCPPMTTRNVQHHIDTGKESPLMLKRRRQAQSEDLIIEENVTK FT MLRAGVIEAGDGAWGFPVVLVRKKDGEVRFCVDYRALNKITKRDVYPLPQI FT DETLEALGGAKLFTTLDLKAGYWQIGVAPEDRDKTAFTTKQGLYRFVRMPF FT GLMNAPSTFQRMMNGVLRGLTRLICLVYLDDIVVFTRGGMERHIVELATVL FT ERLSSAGLTLKLKKCVFAAKSMEYLGHELSDEGVRPVQRLVTAVTEFPRPR FT DPVEVKRFVHLAGYRKFIEALGSIMAPMTRLLKKDVDWEWTEAQEFAFERV FT KAAMTTAPLLIYPDFTLPFRVVTDASAVGLGACLIQDQGRGWQPIAYASKV FT NSNAEANYSITELGCLAVVWAVKLFRPYVYGRAFTIVTDHSALKWLMTRPN FT LAGRLHRWSLTLQEYEFEIKYRPGSTNVVADALSRAPAAVKTVTGRGQPIR FT RTLVATPQTTTTNEGAKTEDDEPPMAETATRATRIDNGGDQAVATTVEWPE FT DRPLTRTARRLLEAEAATASTAGVNKQLDGSVTANMNDSDDKLQPVVSSTQ FT RQQRTTNAVESRRRAETTETARPERRALVHATARHCTTLRAIREMGAALTR FT " XX SQ Sequence 7158 BP; 1809 A; 1658 C; 2498 G; 1193 T; 0 other; tggtggtcat acaggggcgt taagcaaaag agaacgactt acacgacgct tgacacttac 60 gagatcgacc agccttacga gatcgacgac tcggataagt tacgaacgga ttacggatcg 120 ttgtactacg attcactata gtgaccaatg aggggaaaac aacgaacggc agtggccagc 180 agcatgacca cgcggtctag acgcggtacg ggccacgcag cgacgacgca ggaggcgacg 240 aggagagctc cggaggctca aacgacggac gcggcggcgg atgcagggac agtagggagt 300 gctcgacaag cacccgcagc tgagacaacg acgagaggca gcggtgacgc agcactctta 360 gccactttga acagaatgat cacgacggta gctaggttgg agttacgggt agcagggatg 420 gagaccgctc gggcagcgtc acgcccagta tccatgccat cgaccggacc caccaatacg 480 ctgcgatcaa ttgatgcggg gatcgtaccg ccgcatacag gttcctcggc gtcctcgaga 540 ccatcgtcgg gtagagcgac gaggaacagg gcgaactcga caccagcacg cacgagccgg 600 agggcaccag gacccgatgg aagtggaggt ggcgatagca gtgacgacag cgacgacagc 660 agtagcagtg acgatagcta cgatagtagc aacgaggacg ccgaagctgg caacgacgga 720 cgacggcggc gacggaaccg acgcaggaat caaccacgac gcaggcgcca gcaccggaag 780 aatgtgaaag acttggagtt gacggcgtaa aagccatcgc cgacgatctc cgtctcgaca 840 tggatcgcca gggtggactt agcggtagaa ggagcgaaga tctctggacg aggcgactgg 900 acggacaagg agctctactt catggttggc aacaagttgc aggacaacgc ggcaagttgg 960 tgggttcaaa tgaaccagga gctccgagac gaagacaaga cctggaccca cttgaaagcg 1020 gcgctgatgc ggaggtacgg tgagcggccg gaccaggcaa tggctgaatg gcgtgtgtac 1080 cagaggatga tgtggccagg agagacgttt gcggattttg ctgccggatt gcgggcagtc 1140 acgggccaga accacgtcag tgaacatacc ctactggcac agttctatcg caatctggac 1200 aggacgacga ggatgttggt gaagcaggaa ccggcgccta caacgctgga gcaggcagtg 1260 gacaaggcga cggctatcga cgacccgatc gagaacgtag cgcgcgggat ggtgaacatt 1320 ggccggccct gtgcgatggc aacgaacgcg tttgcggtgc ctatggacgg tacgacgggg 1380 agagttgcga ttattccagg cgttggcacg ggagcggtat cgatggcgga catgttagca 1440 gcacagacgg gtacggaagg tgcggagata gcatacttca ccaaccccca gggcgtttat 1500 aacaagttca caggcacatg ggacgtccct gagggcaggt tctggaacgg caggtattgg 1560 cagccgtcaa cgcgcaatca gacgaggacc cgaagtgata atcgctcaag tgggaagcgg 1620 cacggcggat acagcagtaa gaaggcgaag gtcggactgt tgcaggtggc gaccgaggcg 1680 agtaaagagt cagaacccga ggaagcagca ccgtccccga agcagaagaa acggaaagcc 1740 tcagtgcggc aagcgaccgg cagagatcgg ccgacgacag taaacagtga cgagcgacga 1800 agttgggaac ccatcaggtg ctttgcctgt ggtggcgagg gccacatggc acgggaatgt 1860 acgaacgcag aagcaaaggc tcgtaacgac gcgtatctag cggcccgcgc tgaagcggaa 1920 gccaagaagg cggaaaacga gaaacgggcg tagtcggggg acgactgcgt ccggtagaga 1980 actcggttcc ccggacgacg gcgccaagag aggtagaggg tgacgagcag acggtaacag 2040 tgaacagcaa caagaccgac gggagcaaca aggctgcggt ggaggcggct cgggctcatt 2100 tggagacaga acggacggag aggaacgccg accaggcgcg caggaacgtt gtgatggtga 2160 cggcggcgtt gtattacgtg cggccggtgg ctgaggaagg cggcgaagcg acgatggtcg 2220 acgacggagt tgagactgag gaaggcggcg agcgacagat gcccacggac gacgcagtga 2280 ccgaggaagg cggcgagcga cggatgtcca cggacgacgc agtgactgag gaaggcggtg 2340 agcgacggat gctcacggac gacgcagtga ctgaggaagg cggcaaacag ggcgaaaacg 2400 gcggcacgag tgatggcgac actaataacg cagaagacca ggaacccgcc gaaaccgtgc 2460 aggaagtgga cgcagcgact acagaggtca gcgtggctca agtgcgcgct gttcgacgaa 2520 acgcgaagaa ggagatgaag cggcgacggg tactaaacgc gcagaggaga gcaaggacgg 2580 cgaatagtgc tggcgatgag gtggacgcag ctattgcgac actggacgct gcacaactgg 2640 ataggcgacg acgacagtct gaggtggcga gagcctcact ggctcagcga cggcaacggt 2700 atcgtgggat gcaggtgtat tcgatggacg aacgtgctag ggcgcgacta gtgcagcgca 2760 cacaggaacc agcagcgggt gcaacgctgg atcccgacgt ggaggcggac gtcctggccg 2820 aggatggtct gccgacggcg acgatgatgg ttgaaggcga gcggttgccc gtgaagcttg 2880 acagcggtgc gcgttactcg gtggcgggtg tagactggat gctgcggagc gagaagcttc 2940 gtgaaccagc accggtggac ctcgtggaag gtattggtgg gtttgctctt gatgtactcg 3000 gactatgggc gttcgagatg cgtaacgtat ttgggcagac gatcacggtg aaagcatgca 3060 tcattgacgg atgtacggac gagtttctgg tgggagtgga ctccctaaag cagaacaagg 3120 cgacgatgga cctcacgcgc aacgaagtgc gttactacac gagaaacgag caggtagtga 3180 tcccctttag gaccgacgat gacgagagcg gtgccaaagt agcagcggtg cggctgatgc 3240 gccagacccg actacgacgg agcgcggtga cgccggtgga ggtgtcagtt gcagcctcgg 3300 atggtacaga aggactgttc ataccaacgc agagttgtgg ggctgtaatg atggccacaa 3360 cgctgacgcg ggtgaagaac gggaaggcgt tggtgccggt ggtcaacaca cacggaggtc 3420 gagtgagact gcctgacaag cgcgagttag gcacgtggat tccgctggaa aagagtatac 3480 aagtactgga aatgggcggc gcagtagatc gcgacaagct ggatgagtgg ctagctactc 3540 ttggtgacag cgaaacaccg ttgaacaacg aagatgtagt tgtaatcaag acggaagacg 3600 atggtgctcg ggcgctgata ctgcaactgc tgagggcgta ccggaaggtg tcagaggata 3660 ctggtgattg tccgcctatg acaacacgga atgtccagca ccatatcgac acgggaaagg 3720 agtctccgct gatgctgaag cgacgacgac aagctcagtc agaagatctc attattgagg 3780 agaatgttac gaagatgctg cgtgctgggg tgattgaagc tggtgacggt gcctggggat 3840 tcccagtcgt tctggtacgc aagaaggacg gagaagtacg tttctgtgtg gactaccgag 3900 cattgaacaa gattacgaag cgagacgtct atccgctgcc acagattgac gagacactgg 3960 aggcgttagg aggcgccaag ttgtttacga cgctggatct gaaagctgga tactggcaaa 4020 tcggagtagc gcctgaagac cgtgacaaga cggcgtttac tacaaagcaa gggctttatc 4080 ggttcgtgag aatgcctttt ggactgatga atgcaccgtc cacctttcaa cggatgatga 4140 acggtgtgct acgcgggctg acgaggttaa tctgcttggt atatctggat gacatcgtgg 4200 tgtttacgcg tggcggtatg gagcggcaca ttgtggagtt ggcgacggtc ttggagcggt 4260 tgtcgtccgc aggcctgacc ctgaagctga agaagtgcgt ttttgcagcg aagtccatgg 4320 agtacttagg acatgagtta agtgacgaag gcgtgcgacc ggtgcagcga ctagtaactg 4380 cggtgacgga gtttccgcga cctcgtgacc cagtggaagt gaagaggttc gtgcatttgg 4440 cgggctaata ccggaagttt atcgaggcgc tcgggtcgat tatggctccg atgacgagac 4500 tactcaagaa ggacgttgac tgggagtgga ctgaagcgca ggagtttgca tttgagaggg 4560 taaaagcggc gatgactaca gctccgctgc taatctatcc ggactttact ctcccatttc 4620 gagtggtgac agacgccagt gcggtcggtc tgggcgcgtg tcttattcag gaccagggcc 4680 gtgggtggca gccaatcgcg tacgcaagta aggtgaacag taatgctgag gctaactact 4740 ccatcacaga gctcgggtgt ttggcggtgg tatgggctgt caagttgttc cgaccgtacg 4800 tgtacggccg ggcattcacg attgtgacag accactcggc actgaaatgg ttgatgacgc 4860 gacccaacct cgcgggcagg ttgcacaggt ggtcgttaac gctacaggag tatgagtttg 4920 aaattaagta tcgccccggg tccacaaacg tggtggcgga cgctctctct cgtgcaccag 4980 cagcagtgaa gacggtgact ggacgggggc agccgatcag acgcacgctg gttgcgaccc 5040 cacagacgac aacgacgaat gagggggcga agacggagga cgacgaaccg ccaatggctg 5100 agacggcgac gagagcgacg cgtatcgaca acggtggcga ccaggcagta gcgacgacgg 5160 tggagtggcc cgaggaccgg ccattgacac gaacagcacg gcgactactg gaggcagaag 5220 cagcgacagc gagcacggcg ggagtgaaca agcagctgga cggcagcgtg acggcgaaca 5280 tgaacgacag cgacgacaag ctgcagccgg tggtaagtag cacacaacgg cagcagagga 5340 cgacgaatgc agtggaatcg cggcggcgag cggagacgac tgagacagct cgaccggaac 5400 ggcgcgcact ggttcatgcc actgcacgac actgcacgac actgagagca atacgagaaa 5460 tgggagcggc gctgacgagg tagacgagca gccaccgacg gaaatgacgt tgcaggttac 5520 gagtgaagag gtgacgacgg cacagaagcg cagcaagttc gtgaagaagt tgttgcagga 5580 gagcacctac aagaagatac gagttgatca gacgcacgga ctggtggtta tcgagacgcc 5640 acgtgggaaa cgtatagtgc tgccgccggc gatgtggcca gtagtgttta aagtgaacca 5700 cgggtcagtc tgggcagggc atctgcgtgg gccccacacc tatggccgcg tggcgcagag 5760 gtactggtgg cctgggcttc aacgagaagt taacaagttt gtgagggggt gtcccgagtg 5820 tgggagcagg aaagcgcgac cgcgcgaggt cattcctccc ttgcagagtt tacgaggagg 5880 tgaagttggt gatcgatggg ccttggatgt ggcggggcca tttccggtgg ctggaggcgg 5940 aagtcggtat gtgattgccg cacttgagta cgttacccga tacgcagtgg cgaagtgtgt 6000 ggcagagcat aaggcggtga acattgcggg ggtttctgat ggaagaggtg gtccttagat 6060 ttggcccatt tcgtgaatta ctgacggatg gagcgcctga gttggcgggc aaagtgatcg 6120 agtcgttagt gatgatgttg caggccaggc agacaaaccg tgtgccttac cgcccacaga 6180 tgatagggct tgttgaacga tttcacaggt catggaagga ctgtgtagct acctacatgt 6240 ctggcgagca gcagaacgat tgggacctct gggtcaagtt tgcagagtat gcgtacaact 6300 tggcaccaca cacgacggtg cggctgacgc cgaacaagct gatgatgggt aggcgcctac 6360 gggcacctaa tgagctgcta agtgagaatg aggttacgga ggccggagac cttacggcat 6420 atcatgtgag actggtggga gcgatgagaa gaagtcatgt gtacgctgag gaagcacgac 6480 agaaggaaca agaacgacag gcacgctact acaaccgaaa agtacggcaa cgacggacat 6540 tcgcggtggg cgatcgcgtc tgggtgtaca acccgccacg aggagcgaaa gccacgaagt 6600 ttgttcacca gtggatgggc cccatgcgga tagtggagcc cgctggctac gagaactttg 6660 tcttacgacg cgaagataag acgggaacgc ctgagacgat gatagcgcac tcttcgttcc 6720 tggtgagtta ttattatccg acggcagggc tggagaaagc ggcgcaggac attgacgacg 6780 aagtgctgta tgaagaacaa gtctacgatg aagttgaaga cggaggtgca gtcgactatg 6840 atgaggagac aggagcgcct gtatttgcag cgacggcagg ccggcataca ggtgcgactg 6900 gaggagatac gaagaagaga agccgagcag tgggcacaga aaggaaaacc ttcggtgcga 6960 gtggccagtt ggtggagtta cgacgacggc gaagacggaa tcgagctggg caatacgtcc 7020 tggagtacga gctccgcggt agcaacggcg agcgaggggc gaagcggaat gttgagcgac 7080 gttgggtgtc ggccgaggag tacgataagc tgctcgacgc cgacagggtc gtggaagacc 7140 ctgatgatga ggaagtcg 7158 // ID Sola1-1_FraCyl repbase; DNA; PLN; 2489 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Sola1-1_FraCyl. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-2489 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2489 BP; 819 A; 419 C; 525 G; 726 T; 0 other; aagacaggct atgtgataat tgtagaacaa ggtatttcaa aaaaaaaacc tcttttttct 60 gtaggcataa ttgtatgaat atttgaaaga aatgacaact ttgggtgtat gtgttgtgtt 120 caacggaccg atacttgctg aatagtcatg attataattt ttgtacgaac ccccagaacc 180 acttttaatc acgtgtagag tcatgcaggt gagttttgtt ggctatttac tatggccttt 240 ttgttgacgc aacggtccaa attttggcgt gcgcaaaaaa aaataacaat gaatgcgttg 300 aacggcaaaa tgaaatgtga gcgagtcaca aaaaacaggc taaaaactaa agcttcgcca 360 ctttttcttc acaggcagtt cactgtcact tgtcactgtc gttatcattg ttatcatcca 420 tcattgtcaa tccatttggt tctgcaccac ttcctcacct actactaaca tctgcccctg 480 tattactatt gttactgttg ctggctgccc ttacacacca agatgagtat ccaaagatgg 540 gaaaccagtt tagaactaaa gaaaaagaag tcaaacctaa gtgatgctga tcgagtagtt 600 ttgatcacag attggattga agagttgtct ggcaaacaat gtttctacac accaaacagg 660 gtaaaaaaat gttcgtgttt atcttctcta cagggagatg gtgatgcaat ggatgccgtt 720 gcatcatata tattattctg gtccaagatg gatcctctcc aacaaaaaat attgttgata 780 gaaaagatta aagctattca tttagcggag cgactaatag ggagacaaat tctacgttcc 840 actacagaag gaacaaagcc atttcagctt ccattcttag caacagagaa tgtagaaaca 900 aattcgaagt tgagttccat tcttatatgc aagcattcct tggctgcttt gcattcgtat 960 ggtgtatatg cacttgcttc tcttgaaaaa aatgcaaagg aaaacacgct acctattcat 1020 ggcaatacag ggaaactaag caagcaatca cttgatcaca gagacaatgt tgtgccatta 1080 ctgaaagatt ttttccttaa tgatattctt cctcttgcag gcccacgtcc aacacgatgg 1140 acaagagatg cggtaacaaa gaccaccgaa gtacgagata gtgatggaat tgaggagctt 1200 gatcctggtt ggtccaagcg tcgattgtat ggtaattttg catggaagca ggggtggaag 1260 atacgtgcaa cttcaaaagg aagtactgta aaagaaagaa gaactgatgc aaattggtct 1320 gcaactgaag aaccaaaaaa ggtatgttgc cgacaatctt tcaacaatta ctggagttat 1380 aaccacccaa aattaattgt taggaagcca tctaaagata tatgcagtgt atgttacaag 1440 ttcagccttt tgtatagaag gaaaattgat agaagacgcc gtcaagctgc tgataatgat 1500 gacaatattg atagtgatga tgaagatgat gaggacaata gtgatgacga tcttgatgat 1560 gatgaacttg aagaagcaat ggttaaggta ggaaggcata tagaagaagc aaggtcgatg 1620 agagaacttc ttggtgattt acatgccgaa gctcagaagt gtacagaaga tggtgttgac 1680 gatgaagaaa tgtgcattgt attgattata gatttctgtc aaaatatgga gatgccttcg 1740 tttaacggaa ctcaaccagg tgaaacatac tactattcac ctatgactgt accgacactt 1800 ggaattgttg atggtaacac caaagataac atactttatg cctacatata cagtgaagca 1860 gaaggtaata aaggaggaaa tgttgttgca tcattaatta tgaagtatct ttctgatcgt 1920 ggtttattag acggaaagaa aagatgtaag ttgacaattg tcatggataa ttgtccagga 1980 cagaacaaga acaaccatgt tgtacgatta gctccttatc ttgttactaa agggtatttt 2040 aagaaagcgg gattcttatt tctccttgct ggtcatacca aaaattgggc tgataaacgg 2100 ttcaacaatt tgaaagaaga ttaccgtgta actgatcttt tttgtatgga cgacttagtt 2160 gctgcctgta atagaagtga ctatgtcatt gctgaacagg tgtattggaa agatctccgt 2220 aactacaatc attatctgga ttcatttttc aaaaagatgg aagctgtaaa gatttatcaa 2280 atgtttaatt cttccgttga ttatgctgct acagcatcag taaatattgg tctcgggaat 2340 aagaaatatc gtacctgtaa tcttcctgat gctgatatct aaaatataca tcgtcaagat 2400 ttgaagaaac aaattagagg aggtgcagct gcaaggacag cccgaatgaa taatgaggct 2460 agttatttgt atccgtttca tcctggatt 2489 // ID Gypsy-13_PIT-I repbase; DNA; PLN; 7851 BP. XX AC AATU01000362; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PIT_; KW Gypsy-13_PIT-LTR; Gypsy-13_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7851 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000362; Positions 38989 46839. XX CC Positions [6510-6851] - Integrase core CC 'GTAC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 2354..4441 FT /product="Gypsy-13_PIT-I_1p" FT /translation="MQSARPSGRMKRGTVTVRESGTNGSTSKTETDVSGAK FT HDKETTPDADRERREKLGDENETRNDDVLDEEALLRSRLREEAREQDEWRA FT RCYVDTVRPAMAALRYACARTAVRDGAAQTGRRLSTGEGDEAKNDDIVASE FT DGVAAMRTDDGEDVPEERVAAETTNAESMTTVQLGLELTDELLTDLGSVAK FT VRTVVKRARRDAKRRRAQRALQRKLASGGDEVSVLVAALDEEQQVRRRQQA FT DEAQRGLVKRQDRRRCEDQTHAQRRERCAQVRLVQRAQDDKVTSIEVEDAV FT VAADDGLPTALMDVSGARYEVKLDSGARYSVAGTACMARGDRVRGARTCRL FT RGRNRWILLDVIGVWRVEMRNAFGQLVQVKAYIIEGCTDEFLIGVDFMKKH FT KVNMDFEQHEIRYYEREQLVVIPFRTNGVDGTPTVATVRLVRRARLVRNAV FT TPVEISVAATDGEEGIFVPNDACGAVLLAATVTTVRNGKALVPAINMRGDK FT TKLPSEKELGKWVPLDADLNVLKLNGELGHERLGEWLETLGDAATPLDNEN FT EADIRTDENHERALVLKLLRAYRNVATSAGDCPPVTKLDVHHHIDTGSSAP FT IMLKRRRQAQAEDAIVEDNVAKMLGAGVIEEGNGAWGSPVVLVRKKDGEVR FT FCIDYRALNKVTKRDVYPQPRIDETLEALGGSLLFTTLDLRSGYRQK" FT CDS 5091..6851 FT /product="Gypsy-13_PIT-I_3p" FT /translation="MQDQGKGWQPIAFASKVNNTAESNYSITELECLAVVW FT SIKLFRPYLYGRVFEIVTDHSALKWLMTRPNLAGRLHRWSPTLQEYEFTIA FT YRPGATNVVADALSRAPAAVLAAVGRRPLPAMTRTAETNDTDDDKEVETAP FT VTEHHDDKHGDSDEELAIPVPRTTGSGNLAPSSTVHATESDTTQAVPDDTN FT WMAPVTTTATVATNEMAVTTYRTGASDGVPMTTKKRRRTATVVTPVPPRRS FT ERLAARTASTLPRSDTDTYATKPREVTTTAVPAGDPATRRVTWAEQLCEYQ FT DARDATESVQSIRKTSLPNEDDSTERMCSENTETETTATKTAMRKPTMRER FT TTATSARTRDAGEDDEELVPREPTLQVTDDEIGHAQKRSQFVRKLVTDGVY FT KGMKVETTYDLVTINTKHGRRVVLPPALWAVVFKELHGSVWAGHLRGPHTY FT GRVAQLYWWPRLQAEVKHWVRGCPECGSRKARPREVIPPMRSIRGGDVGDR FT WALDIAGPFPVAGGGERLVIAALEYVTRYAVARSVTQHTAENVAMFIMNDI FT VLRFGAFRELLTDGAPELTGKVIEQLVELLQAKQVNPVPY" XX SQ Sequence 7851 BP; 2110 A; 1931 C; 2539 G; 1271 T; 0 other; tggtggtcat acaggggcgt taattcgaca aagattgacg attgatacga gaaacaagta 60 gattacgcaa aagttgcgaa gttacgaagt tacgtagggt tacagcagag ctctacataa 120 tggcgagaac caagacggtg cagatatcgg cgacccctgg cggaatggtg acgcggtcgc 180 agtctccagg agtgacaaga tcggcgccga cgaagacagc acccacgaca acgaacccaa 240 cgacacagcc gacgatggtt atggtgtcct cggactcggc agcgggtaca ggagcgccag 300 cacgacgaca ggcggcctcg gagagtcagc gaccagcaac gccaatggaa caggcggcag 360 tggactctgc ggacggtgtc cggcggcaag caagaaacaa cgagcctgac gaagcgcatg 420 acaacgaaga cgacgtgcca cgggaaccgg aagcagtaca tggtacagca acgcgcaacc 480 ggcgtgcgac gaacacggac ggagacgatg gtgatgctgc agtgccagtg tcggacgcag 540 cggcactggt aacagcgatg caacaactag ttacgacgat ggcacggctc gaatcacgag 600 tcggggccat ggagacgacg cacgtggcgc cggtggcacc agtacaacga tcagcagctc 660 ccgcgcagga gtcagcgacg acgatagtac agcagttggc gccgggcacg gcgatcaccc 720 tcaccgccag aagcacgagt agtacaaggc ggccggggac gatggacgag ttcgggttgt 780 aagtggaaca aggatgccac gcaggcttcc atcacccagc gatagcagcg aacgaatgtg 840 attgacaagt atcggttgag ggccgccagc caaaaccccg ggggaacgaa aaagaatccg 900 gccaccgaat accgacgacc gatcgccaac ttctaaaagt agcagccaaa accgaccaaa 960 gtgtcgatgg acgtcaacga cgtggacgac aacgcggagt ccggcgagtg gcggcacacg 1020 caagcccacc acgacaccga cgacgcaaga agagtatcaa ggacttagag ctggcgccgt 1080 tcaagccttc tccgacggtg tcagactcca cttggattac gaaggtcgac ttggctctgg 1140 aaggtgcacg ggtttccggt cgaggcgatt ggacggacgc cgagttgtac tacatccttg 1200 gcaacaagct tcaggacaac gccgcaaggt ggtgggtcca gatggataag gagttgccgg 1260 tgacggaacg cacatggacg aagttgaaga cgtcgttgca gcgtcggtac ggcgagcgac 1320 ccgacaagtc tgcagcagaa tggcgagtga gtcgacgaag aatgatgccg gaagagacct 1380 acgccgactt cgcggctggc ctacgggatc tcactggaca aaacaggatt agtgaacggg 1440 tcttgttggc acagttttac cgcagcctag ataagactac gaggcagcta gtaaagcagc 1500 gaccgaagcc gagaacactt gaagaagccg tggataaggc gacggagatc gatgacccaa 1560 tcgacaacgt ggcgcagggt atgcatagca tcgggcagcc gtgggcgact gctccgaacc 1620 cctatctggt ccccatggac ggcacaaccg gacaagtatt ggtgattccg ggtgttggtg 1680 gtggagccag cgccggggac gatggcacct tgatgatgaa gcaggacggc gaagacttag 1740 cctacttcac aaatccacag ggcgtctgga acaagtacac gggcacgtgg cagggtccag 1800 atggtcgcac ggtggaaatg ggccgttact tggaacgttc cacaacggaa aagaaacgac 1860 tgacagcagg cgatgactaa agcgcaaact accggccaac gaccagctgg cagaggagat 1920 cggaaagcta agacgatgat ggtacgacca ccacccgagt ccagcgacga atcggaagca 1980 ggtgctgaac ctctcccgcc accgaaacgc agacggaagg aggcgcccat ccggcaagtg 2040 aaaccagtag aagctcagaa cggagaatac ggacggaaga gtagacaggc gaccgagcga 2100 ggtgaacagg tgctatgcgt gcggccaggc tggccacttc gccaaggagt gcaccgattc 2160 ggctgccaag gctcggaacg acgcgtatct cacgggacgt gaatcgaagg cgaagacggc 2220 ggaaaacgga gagcggacgc agtaggggaa ctactgtgtc cgagatggaa gacaaattcc 2280 caatgcacga gcgatagtaa cgacaaaact ggaggtcgag tgcagtgtcg agtgccacga 2340 atgatggcgg gagatgcagt cagcacgacc ttcgggacgg atgaaacgag ggacagtaac 2400 ggtgcgcgag tcgggtacga acgggtcaac ttcgaagaca gagacagacg tctccggcgc 2460 gaaacacgac aaagagacga caccggacgc tgatcgagaa cggcgagaaa aactcggcga 2520 cgagaacgaa acacggaacg acgatgttct ggacgaggaa gcactgttgc gctcacgact 2580 acgtgaagaa gctagagagc aagacgagtg gcgtgcacgg tgctacgtag acacggtacg 2640 gcccgccatg gccgcacttc gatacgcatg cgctagaaca gcagtgagag atggagctgc 2700 gcagactggg cggcgacttt caactgggga aggcgacgag gcgaagaacg acgatatagt 2760 cgcgtctgag gatggcgtgg cggcgatgag aacagacgac ggcgaggacg tgcctgaaga 2820 gcgcgtggcg gcagagacga caaatgctga atcgatgacg accgtgcagc tcgggctgga 2880 gctgacggac gagttattaa cggatctggg cagtgttgcg aaggtccgga cggtggtaaa 2940 gcgcgctcga cgtgacgcga agcgtcgacg tgcgcagcga gcacttcaac gcaaacttgc 3000 gtccgggggc gacgaagtca gtgtgctggt agccgcactc gacgaagagc agcaggtacg 3060 acgacgacag caagcagatg aggcgcagcg cgggttggtg aaacgccaag accgacgacg 3120 gtgtgaagac cagacccatg ctcaacgacg agagcggtgc gcgcaggtac ggcttgtgca 3180 acgggcgcag gacgataaag tgacgagcat tgaggttgaa gacgcagtag tggcggccga 3240 cgatggtctg cctacagcac tgatggacgt gagcggggcc cgttacgaag tcaagctgga 3300 tagcggtgcc agatactctg tggctggtac ggcatgtatg gcgcgtggag atcgagttcg 3360 tggcgcccgc acctgtcgac tacgtggaag gaatcggtgg attctcctag atgtcatcgg 3420 tgtatggagg gtcgagatgc gcaatgcatt tggtcagcta gtacaagtga aggcgtacat 3480 tatcgagggc tgcactgacg aattcctcat cggtgtagac ttcatgaaga aacataaagt 3540 taacatggat ttcgaacagc acgagatcag atactacgag cgtgagcaac tggtggtgat 3600 tccgtttaga acgaatggtg ttgatgggac gcccacggta gcgacggtga gactagttcg 3660 acgcgcacga ttagtaagga acgcagttac accggtggaa atctcggttg ctgcaacgga 3720 cggtgaagaa ggcatcttcg tgccaaatga tgcgtgcggt gcagtgctgt tggctgcgac 3780 cgtgacgact gtgaggaacg gcaaggcgtt ggtccctgcg atcaacatgc gtggtgacaa 3840 gacgaagctg ccgagtgaga aagaattagg caagtgggta ccgcttgatg cggacctgaa 3900 cgttctaaag ctgaacggcg aactggggca tgaacggctg ggcgaatggt tggagacgct 3960 tggtgacgcg gcgactccac tggataacga gaatgaagcc gatatacgaa cggacgagaa 4020 tcatgaacgt gcattagtgc taaaacttct acgagcatat cgaaatgtag cgacgagcgc 4080 gggcgattgc ccaccggtga cgaagctgga cgtgcatcat catattgaca ccggaagcag 4140 tgcgccaatc atgctcaaaa gacgacggca agctcaggcc gaagacgcca ttgtagaaga 4200 caacgtggct aagatgttgg gagcaggagt gattgaagaa ggtaacggag cctggggctc 4260 ccccgttgtc cttgttcgca aaaaggacgg agaagtcaga ttttgcattg actaccgcgc 4320 tctgaataag gtgactaaac gtgacgtcta ccctcaaccc cgaatcgatg aaacgctaga 4380 agcgctcggt ggttcgttgc tgtttacgac actggatctt cgctccggct acagacaaaa 4440 ataggagtgg cgccggaaga tcgagataag acggcattta cgactaaaca agggctttac 4500 aggtttaaac gcatgccctt tggtcttatg aatgcgccgt cgacttttca acggatgatg 4560 aacggagtgc tacgtggcct gacgtggact tcatgtctag tgtacctgga tgatattatg 4620 gtatacactc gaggtggaat cgagagacat ctagtgcaat tggctactgt actagaacta 4680 ctatcgacag ccgggctcac gcttaaactc aagaagtgcg tgtttgcggc gcgttcgatg 4740 gagtaccttg gacacgagct cagcaacgac ggtgttcggc cagtagagcc gctcgatcac 4800 ggcggtctcg gagttcccga cgcccaagga cccagtagag gtcaagaggt ttgtacacct 4860 cgctggctac tacaggagat ttatcgaagc gcttccgaat ctataatggc ccccaatgac 4920 tcgactactc aagaaatata ccgaaatggc agtggacaga ggagcaacag ttcgcgttcg 4980 aacgagtgaa ggcggcactg accacgaaac cgctgcttat ctaccctaac ttcgcacttc 5040 cttttcgact tgcgacagat gctagtaaag ttggcttggg cgcctgccta atgcaagatc 5100 agggcaaagg ctggcaaccc attgcattcg ctagtaaggt gaacaacaca gcggagtcga 5160 actactctat caccgagctc gagtgcttgg cggtggtctg gtcgattaag ctatttcgac 5220 cttatttgta tgggcgtgtg ttcgagatcg ttacggacca ttccgcacta aaatggttga 5280 tgacgcgccc gaatttagca ggaaggttgc acagatggtc accaacccta caagaatacg 5340 agtttactat cgcgtaccga ccgggtgcca cgaacgttgt ggccgacgct ctctcgcggg 5400 cgccagcggc agtgttagca gcagtaggga gacgaccatt accggcgatg actaggacgg 5460 cagagacaaa cgatacggac gacgacaagg aggtagagac ggctccagtg acagagcatc 5520 acgacgacaa gcacggagac agcgacgagg agctggcgat tccagtgccg aggacgactg 5580 ggagtggcaa tctggccccg agtagtacag tgcacgcgac ggagagtgac acgacgcagg 5640 cggtaccgga cgacacgaac tggatggccc ctgtgacgac tacggcgact gtagctacga 5700 acgaaatggc ggtaacgacg tacaggacgg gtgcgagtga cggagtgccc atgacgacga 5760 agaaacgacg cagaacggcg acggtggtga caccagtacc accgcgacgc agtgaaagac 5820 tagcagcgcg cacggcaagt acgttgccac gcagtgacac ggatacgtac gcgacgaagc 5880 cgcgagaagt gacaacgacg gcagtaccgg caggagaccc agccacgcga cgtgttacgt 5940 gggcggaaca actgtgcgag taccaggacg cgcgagacgc gacggagagt gtgcagagca 6000 tacgcaagac gagtttaccg aacgaggacg acagtacgga gaggatgtgc agtgagaata 6060 cggagacgga gacgaccgca acgaagacgg ctatgcggaa accgacaatg cgggagcgaa 6120 cgacggcaac gagtgcgaga acacgagacg cgggggaaga cgacgaagag ctggttccga 6180 gggaaccgac acttcaagtg acggacgacg agatcggaca tgcacagaag cgcagccagt 6240 ttgtacggaa gctggtgacg gacggtgtct acaaaggcat gaaggtcgag acgacatatg 6300 acctcgtgac tatcaacacg aaacacggac ggcgagtagt attaccaccc gcgctgtggg 6360 cggtagtatt taaggaatta cacggctcgg tatgggctgg acatctacgc ggaccgcaca 6420 cctacggacg agtagcgcaa ttgtattggt ggccacgact gcaagctgag gtgaaacact 6480 gggtacgagg ttgcccagag tgtggcagtc gcaaagcgag accgagagaa gtcattccac 6540 ccatgaggag cattcgagga ggagacgtag gcgatcgctg ggcgctggac atcgctggac 6600 cattcccggt agcaggtggc ggcgaacggc tcgtaatagc ggcgttagaa tacgtgacac 6660 ggtacgcagt ggcgcgaagt gtaacgcaac acacggcaga gaacgtcgca atgtttatta 6720 tgaacgacat cgtactacga tttggcgcct ttagagagtt gctgactgac ggagcacccg 6780 agctgactgg caaggttatt gagcagctcg tggaactgct gcaagcgaaa caagtgaatc 6840 cggtacctta ttgaccgcga ctgataggac ttgtcgagcg atttcatcga gcgtggaagg 6900 actgtgtgtc cacgttcatg acggacgaga aacaggatga ctggagtcag tgggtgcagt 6960 ttgcggtgta cgcgtacaac tccgcaagac acacgactgt ggcgttgacg ccgagcgagt 7020 tgatgatggg gcgacggcta cggccaccca acgaattgat gcgacggatg gagcgcacga 7080 ggcaggtgat ctgatggagc accaccaacg attgatacga tcattggcac ggagccacga 7140 cagtgcagaa caagcccgac gcaatgagca ggagcgccaa gctcgttact acagccgacg 7200 gacacgacag cgacggacgt ttagcgttgg cgaccgagtg tgggtgttca acccgcctcg 7260 aggacagaag gcgacgaaat ttgtccacca gtggatgggc cccatgcgca ttgtagagcc 7320 agcaggatat gaaaattggc tgctggagca cgaagacaag gttggaccgc cggagacgat 7380 aatagcccac acgtcgtttc tagtgagcta tcattatccg acggcccttc ttccgcagca 7440 ggcggcagac ttggtggagc agttggacga tgaagatcag agggcgacga ggaacgatgt 7500 tgaggcgaaa cgagcggctg tacgagcagc ggcagcacct cgcgagcgaa cagcgacaac 7560 aggagcgaag cgaagacgag ctgaagcaac agcgagaacg aacgcagccg gaacctcgaa 7620 cgatgggact ggtggagctg cagcgacgaa gacgacgcaa ccgagttggg cagtacccac 7680 tcgagtacga actacggccg actggcgagc ggtcatggtg gagaaatgat gacgaacgac 7740 tttggacgac caaggacgga cgaccaaaaa cccggtgggt ctcagtcaat gagtacgacg 7800 cactgcagcg cgccggacag gtcgtggaag acccgtggaa tgaggaagtc g 7851 // ID Copia-7_PR-LTR repbase; DNA; PLN; 232 BP. XX AC AAQX01001268; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PR_; KW Copia-7_PR-I; Copia-7_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-232 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001268; Positions 21491 21260. XX SQ Sequence 232 BP; 66 A; 45 C; 69 G; 52 T; 0 other; tgttggaatg cacatctggg acctggaaag ttgaagagaa aaagaaagct gagaagctag 60 gaaggcttag gagctgagat atcaggtcac tgtacgacaa tgggcttgaa cccgttgccc 120 agtaaatgtt ggtaggagcc gatgaggcag ggctctaacg ttcaatgcat tgagtattca 180 ttttgaatcg ccacgcgtac gagtgcgcct ggaaccggta ctggttccaa ca 232 // ID Copia-15_PIT-LTR repbase; DNA; PLN; 255 BP. XX AC AATU01000194; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-15_PIT_; KW Copia-15_PIT-I; Copia-15_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000194; Positions 59016 58762. XX SQ Sequence 255 BP; 63 A; 55 C; 85 G; 52 T; 0 other; tgttggaaga tgatgcacat gcgcgggatc actctggacg tgggaacgac gagcagctgc 60 tactgccgga ggtttgtgtc tggagcgtgg tacgtatgga gcggggaacg tgaggctgtg 120 agacctccac gtggaagaca gtaaggatag gaagaatagg aagagtaaga ccgaatctca 180 ctctcccttt tgcgttggaa tccacgactg cgttgcacac gaaggtgctg acccgagggt 240 ccagcacttt gaaca 255 // ID Copia-7_PIT-LTR repbase; DNA; PLN; 212 BP. XX AC AATU01002570; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PIT_; KW Copia-7_PIT-I; Copia-7_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-212 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002570; Positions 6980 6769. XX SQ Sequence 212 BP; 60 A; 42 C; 48 G; 62 T; 0 other; tgttgaagtc tgcaccacgt cacaggattg tgtggtgcac aaaaaaggca acttgctgtg 60 tcatcgaaca ttcggagtca ttccaatctt ctagaattcg agtgttgcag taggcagtgc 120 aggaaggatg tagagagcta gtttagtttg attctcactt ttcattttac gctgcatcag 180 accaagaaac tcaagtcgtt tttacaacaa ca 212 // ID Copia-3_PR-LTR repbase; DNA; PLN; 288 BP. XX AC AAQX01000448; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PR_; KW Copia-3_PR-I; Copia-3_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-288 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000448; Positions 4084 3797. XX SQ Sequence 288 BP; 68 A; 79 C; 52 G; 89 T; 0 other; tgtcacggtg tgcatcttcc aatagaggta cactgtacca tccccaatat cgaatgttca 60 agagaccctc tctaactaga taggagagcg tacactatga tgtttactat ggtatagtgg 120 atctaagagt ggacccatgg cagttggagt gactggcgga caacagtcct tcctccaact 180 gctccagtag ctctcagatg tcttctgtca aatattaatc tcactttcgt tttttttacc 240 tcttctacca acttgccttt cttcccccgt tcaacctgct cccactca 288 // ID Gypsy-24_PIT-I repbase; DNA; PLN; 4867 BP. XX AC AATU01001488; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-24_PIT_; KW Gypsy-24_PIT-LTR; Gypsy-24_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4867 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001488; Positions 26915 31781. XX CC Positions [3569-4087] - Integrase core CC 'AAGTT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 69..1043 FT /product="Gypsy-24_PIT-I_2p" FT /translation="MPGPKITESDDEEDFREVASSDGREQQTEVTTGPDET FT SMPQQVRVPQPIFSVVNPPKVTSIAREALVEWMKLRKEYEGHVKERCKGSK FT EDVAAVMSSVKSSFDDYLLETLCEVRWGVEKKDVSDDFLLEKIREITDSFQ FT NQVLPPVKELFRDELNMDMKNMDIDSRVTDYFHQCNMLIKKYGFICFFESE FT KGPKEKCKLLINSLPKGLKDKVQNELDYRLPEAKADIKKLYILVSDKAREQ FT AIEERALKSVGNPRRSRDSGQKKRHAEQKDRRLVKKMKQSNKTNQSQAGKS FT AQVATKGVQTRLFSLWRSPLLVQMSNRYARRAR" FT CDS 1490..3562 FT /product="Gypsy-24_PIT-I_1p" FT /translation="MLAVPFAADMDGDEFDDANEPTIGIDELKDDVRAGVR FT GLVEKAIENGFPREHKKELFHIASKFDIWRLQLGADPPAKVPPMRVRLKTG FT ARPYRCKARRYPPEIRRFLDDFNSKLVELDWVYENPESSWACPELPVRKGA FT GEFRQTADYKPVNALVEAIVGMMSDLNTDLGDVEGAIFFGLFDFIKGYWQL FT ALADECQEMLSYMTHNKVYTPRRVPQGCTDAALFFQATIQKCLEELLHRHL FT LIWIDDLLLFAKDVHTYLEKMERMLELLDFFGFKLSVKKSCVYKSEVRWCG FT RIITGSGVRHDPERLRTLQELPYPATAEELQQFLCSANWMRDSLLDYASRT FT RPLQDALDNALSNATRRTKFVASGIAISLTDEERLAFDGLKRLLMNSVKLA FT FPVEHATMCVLTGASDLGWSLVVTQVIEWKANEPVHQQQHQLLICLSGTFT FT GSQCHWSIIEKEAYPIVCACDKLSYLLLRPNGFQLYCDHRNLIYVFVKKHI FT RGKLLRWATKLMEYKYVIEHIEGTSNVWSDMVSRWVGNHAKDAHLRQMTLR FT PRHSEAPTDSGTARRRRKRRKSKRTVPGDHSAATTPSQLPIRPLNDPEFEQ FT PTLKAILESQDRHKQSRPQEAIGDDEQGWRVNGKLWIPETDANLIMRILVV FT AHCGPQGHRGREATIEAIRRFVYLVHLRAQVENFLSRSPCQR" XX SQ Sequence 4867 BP; 1360 A; 1054 C; 1338 G; 1115 T; 0 other; aagctatctt tagttgcggg ttcagcaact aaccgactga ttggagaaaa ccaaccaact 60 gaaagaagat gccgggtcct aagattactg aaagtgacga cgaagaggac tttcgcgagg 120 tagcaagctc cgatggacgt gagcagcaga ctgaagtgac gacaggaccg gatgagacat 180 cgatgccaca gcaagtgcgt gttccgcagc cgatcttttc ggtggttaac cctcctaagg 240 tgacttctat cgcccgtgag gcgctggtag agtggatgaa actacgaaag gagtatgaag 300 gccacgtgaa ggagcgttgc aagggcagca aggaagacgt cgccgctgtg atgagtagtg 360 tgaagagttc ttttgatgac tacttgctcg aaacactgtg cgaggttcgt tggggagtgg 420 agaagaagga tgtgtcggac gatttcctgc tggagaagat ccgtgagatc accgacagtt 480 tccagaacca ggtacttcct ccggtgaagg aactttttcg tgacgaactc aatatggaca 540 tgaaaaacat ggacatcgat tcgagagtga ctgattactt tcatcaatgc aacatgttga 600 tcaagaagta cggcttcatt tgtttttttg agtctgagaa ggggccaaaa gaaaaatgca 660 agttgctcat caactctctt ccaaagggat tgaaggacaa ggtgcaaaat gaactcgact 720 atcgtctccc cgaggcaaag gctgacatca agaagttata catcttggtg agcgacaaag 780 ccagggaaca agcaattgaa gaacgtgctt tgaagagtgt tggcaacccg aggcgcagcc 840 gtgattcagg ccagaagaaa cgtcatgccg agcagaagga tcgccggtta gtgaagaaaa 900 tgaagcagtc caacaaaaca aatcaatccc aggctgggaa atccgctcag gtagctacga 960 agggggtgca aacaaggttg ttttcattgt ggaggagccc actacttgtc caaatgtcca 1020 accgctacgc ccgtagagcg cgataaacta ctcgcagaca aaaaagtacc aacaaccaag 1080 aacacagctt ccaaaaaagg aagccgctag attaaaccga gtccaagcgt gttttcataa 1140 gcgcggaaag tttgttgtgc tggagaatga ggtggagatt ccgctctgta tcgacagtgg 1200 ggcagaccgc tgctctttag atgaacatgc ttttgatcgg gtgaaaaagg caaggcctga 1260 agttgtgcgc cataagttag tgaaaccagt gaagtgcact ttggctgatg ggagtgtgat 1320 ttgtgtgaat tggactgtga aattgaactt aaagctgcga acaattgccg gtgtggttaa 1380 tgttgccgag ccagtcgagt gtttaatcat tcctggcgac tcgggtgagt tcctactggg 1440 aaatgacctg ttgctctccc tagtaattga cgttggtcgg caaattgaca tgctggcagt 1500 gcctttcgcg gctgatatgg acggagatga atttgacgat gccaatgagc caacgattgg 1560 tatcgatgag ttaaaagatg atgtacgagc gggggtccgt ggcttggtgg agaaagcgat 1620 agaaaatggt ttcccacgcg agcataagaa ggaattgttt cacattgcga gcaagtttga 1680 tatatggagg ctgcaattgg gagctgatcc acctgctaag gtaccgccaa tgcgtgtacg 1740 actcaagact ggcgctcgac cctaccggtg taaggctcgg aggtatccgc cagaaatacg 1800 acgtttcttg gatgatttta actccaagtt ggtcgaatta gattgggtat acgagaatcc 1860 ggaaagtagt tgggcgtgcc cagaactacc ggtgagaaaa ggagcgggag aatttcggca 1920 gacagccgat tataaaccgg tgaacgcttt ggttgaggcg attgtgggga tgatgtccga 1980 tttgaacacc gaccttggcg atgttgaagg agcaattttt ttcggtttgt ttgacttcat 2040 caagggctac tggcaattgg cactagcaga cgagtgccag gagatgcttt cgtacatgac 2100 gcacaacaag gtgtacactc caagaagggt gccacaaggt tgtacagatg ctgcgttgtt 2160 ttttcaagcc acgatccaga agtgcttgga agagctgcta caccggcact tactcatttg 2220 gatagatgat ttgttgttat ttgcgaagga cgtgcacact tacttggaga aaatggagag 2280 gatgctcgaa ctgcttgact tcttcggatt taagctgagc gttaagaaat cttgtgtgta 2340 taaaagtgaa gtacgttggt gtgggaggat tattactggt tctggtgttc gacacgaccc 2400 agagcgcctc cgcacgctcc aggagcttcc gtatccagcc actgcggaag aattacagca 2460 gttcttgtgc tcggcaaatt ggatgagaga tagtttattg gactacgcta gcaggacccg 2520 accgctgcaa gacgcgttgg ataacgctct gtcgaatgca accaggcgga caaaattcgt 2580 tgcctcaggg atagccatca gtctgaccga tgaggaacga ctagcgtttg atggcttgaa 2640 gcgattactg atgaacagtg tcaagttggc attcccggtg gaacatgcta cgatgtgtgt 2700 tttaacaggc gctagcgacc ttggctggag tttggtggtg acacaagtga tcgagtggaa 2760 ggctaacgag ccggtgcatc agcaacaaca ccaattgttg atctgcttga gcggaacgtt 2820 tactggatcg cagtgtcatt ggagtatcat agaaaaagag gcatacccaa ttgtatgcgc 2880 ctgcgataaa ctaagctact tgttgttgag acccaatggt ttccagctat attgtgacca 2940 tcgaaacctg atatacgttt ttgtaaagaa acatatccga ggcaaactgc tcaggtgggc 3000 cacaaagctg atggagtaca agtacgtgat cgagcacatc gaaggcacat cgaatgtttg 3060 gagcgacatg gtgtctcgat gggtcggaaa ccacgcaaag gacgctcacc tacgacagat 3120 gacgctccga ccaagacact cagaagctcc tacggactca ggaactgcaa gacgtagacg 3180 gaaacgccga aaaagcaagc ggaccgtacc aggtgaccac agcgccgcta ctacaccctc 3240 gcagctacct atacgccccc tgaacgaccc agaatttgaa caacctaccc taaaagcgat 3300 cctcgagtct caggatcgac ataaacaaag tcgtccacag gaagcaatag gagatgacga 3360 gcaaggatgg cgtgtaaacg ggaagctgtg gatacctgag acggacgcta acctgataat 3420 gcgtatactg gtggtggcgc attgcggtcc acaaggacac cggggcagag aggctactat 3480 tgaagcgata cgaagattcg tctacttggt ccacctgaga gcgcaggtgg agaatttttt 3540 atcaaggtca ccatgtcaaa ggtagtaaaa taatccagcg tccatggggg gggagaagta 3600 ccgtacgaat gaacgaaatg gagctctcca ctgggatttc ttatctctgg gcgatagctt 3660 cgcgggtgat cgctacttat tagtacttaa ggacgaagcg actcatttct gcgagctgac 3720 cccatgtgct gtaccgacca gcgaggtagc agtcgacgct atcctcacgt ggcacagcag 3780 atacggcatt ccaccactct ggattagtga ccaaggatcg cattttaaga acactgtggt 3840 agcagaagta tgccgtcgac ttaagtcaaa gcaagaattt actgctgcct actgtccgtg 3900 gataaatggc agcgtcgagc gagcaaaccg cgacgtcata caagtgctac gagtactgtg 3960 tttggaatat gaagtggata cacatgactg gacctttttc gtacccatct tgcaaggaaa 4020 tttaaaccat acgccggtcc catcgcttgg taacaaggca cctgtagagc tgttttgcgg 4080 actgcctatt gcatcgccgc tgactttctg cgtagaccca aaacaacgga agatactgga 4140 gctaccagga cagccggcca aaattgaacg ctggttagag gtgatgaaag agagtgtacg 4200 tgctatgcat aaaccgatga tcacggcgcg tgatcaacag acggagcgta acaaaaagcg 4260 tcatcagcat gcacaacgac cgaactttga tgttggagat tacgttctca gatcacgagt 4320 ggatagtaag catcaagaca agcttttggt gacatggatc ggacctacca agtcatacgg 4380 ccgacacgca ctcgttccgg gtccgccacc tcgtgacagg agcggaaacc gacgtccatt 4440 cgtcgaggtt gaagttctac gctgacagct ccttgcagat cacggaggaa atccgtgagc 4500 atgttgcagc ccaggggcag atcctggcag taagagagct actggaccat gcatggaaca 4560 aagaaaaaaa ggactacgac atcctggtgg cctggaaggg cttggagtca attgaggact 4620 cgtgggaacc tgcgagatca ctaatgaaag acattcctgt gctactcaag caatttgcag 4680 cagccagaga tgattcacga tccgagagac acattcatac gctggcccga caatgaacag 4740 cgggttggat ttttcgatat ttttcgtaaa ttacaaatat tttcggactt ctgacacgat 4800 actttcgaca acctctcgaa agttatattg ctgtatttga tttgatttat taagcttggg 4860 agggcgg 4867 // ID U35230 repbase; DNA; PLN; 692 BP. XX AC U35230; XX DT 24-FEB-1998 (Rel. 3.01, Created) DT 24-FEB-1998 (Rel. 3.01, Last updated, Version 1) XX DE Magnaporthe grisea short interspersed nuclear element (Mg-SINE). XX KW SINE; Non-LTR Retrotransposon; Transposable Element; U35230. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-692 RA Kachroo P., Leong A.S. and Chattoo B.B.; RT "Mg-SINE: a short interspersed nuclear element from the rice RT blast fungus, Magnaporthe grisea."; RL Proc. Natl. Acad. Sci. U.S.A 92(24), 11125-11129 (1995). XX RN [2] RP 1-692 RA Kachroo P.; RT "U35230."; RL Direct Submission to Genbank (01-SEP-1995)Pradeep Kachroo, RL Department of Microbiology and Biotechnology Centre, Faculty of RL Science, M. S. University, Baroda, 390 002, India. XX DR GenBank; U35230; Positions 1 692. XX SQ Sequence 692 BP; 158 A; 236 C; 177 G; 121 T; 0 other; cgaggaactg cgtttgccaa gacccctact gggccattat ttggccatga ggaccggcca 60 cggcgatttc aaggcctacc atgaccgttt caaccaccag gatgcaaaca cctcgtgtgc 120 ctggtgctgg aagcggacct cccctgagca cccggtgcac tgccgctatt cgcgggcggt 180 gtggagaaac tggccgtggc ctaataacga ccggccggcc gggccgccaa atcgcgccca 240 acgctggaaa ttcttccaga caagcttcgg gcaaccgaaa agctttgagg cgttttcgat 300 agccaccaac tacttcagcg cccgccccag agcggcccgc cagcgccccg cgcgcacgaa 360 cgcactttac gcctagggac accgatcgta aacgactcga actctgacga ggaatagact 420 tactgccttt tcacccacac ttcacggcac aagccgtcag acgaaccctc cgtgcacctt 480 aggcacgggg tcgcgtcagt gaactaaccc cctaagcagg accgggcccg aacccggtca 540 ggcacgatcc gcctctgccc tccttgtttt ccccctgtgt aaataaagaa gatagaacgc 600 gcgccgagat acccctcggg aggttgctaa cggccggcta acaagccggc cgagccgccg 660 gttaactaat actactacta ctactactac ta 692 // ID LTR_PP repbase; DNA; PLN; 274 BP. XX AC X53558; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE P. polycephalum LTR. XX KW LTR Retrotransposon; Transposable Element; LTR_PP; KW Long terminal repeat; PPLTR. XX OS Physarum polycephalum OC Eukaryota; Amoebozoa; Mycetozoa; Myxogastria; Myxogastromycetidae; OC Physariida; Physarum. XX RN [1] RP 1-274 RA Rothnie M.H.; RT "LTR_PP."; RL Direct Submission to Genbank (19-JUN-1990)Rothnie H.M., FMI, RL P.O.Box 2543, CH 4002 Basel, Switzerland.. XX RN [2] RP 1-274 RA Rothnie M.H., McCurrach J.K., Glover A.L. and Hardman N.; RT "Retrotransposon-like nature of Tp1 elements: implications for RT the organization of highly repetitive, hypermethylated DNA in the RT genome of Physarum polycephalum."; RL Nucleic Acids Res 19(2), 279-286 (1991). XX DR GenBank; X53558; Positions 1 274. XX SQ Sequence 274 BP; 78 A; 54 C; 51 G; 91 T; 0 other; tgttggaatc tgtagcttgg ttattgtaat attagtgtaa tgacaagatt cagcatcaga 60 aataatgtga caagctgtca aagtatgtga caagctgtca aagtgtaaaa ctaacagttt 120 tatgtaatta tttccttatt cgggcgtttt gctgtgcaca ggcttgtgtg cacggcccat 180 gcaatgcaag gctcaatttt tgtactgtta tcaataaacc tttgtaacac aactcaccag 240 tgtctccccc attcccctgt aactatttct aaca 274 // ID L1-3_VC repbase; DNA; PLN; 8387 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-3_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-8387 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 482-482 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 5% divergent from copies of CC L1-3_VC. L1-3_VC is usually inserted into long tracts of (CAA)n. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 113..1837 FT /product="L1-3_VC_1p" FT /note="ORF1." FT /translation="MAENGQARTSAPNERSNGRATAPAARQQPSRAQAERK FT FVNIDIIMETVPEGTPFHAEQDQVTMEIHWPAGSDPADIQAQLHGPVGKAI FT LNRLRAIIPPVEAEGLLGPRISKCPQRALPSGVKVQEISILIRKGGLAMLT FT TSPAVQRGRLHLGPVHLLPSSPPVEVELPITNLYKAERPYWEIKGIPTYLD FT PRVIPGFLAVCYSTQWFRWDESDIHELNPTMMADTWRVKVAQDTPGLPGEK FT HFELGRAGEATRSGILRASRLKRTDQEGPFTMPCKAPPRKELARQTQQLQQ FT MRRQGRTAQPVAAPGQPGPSNGGGPSYAAAVMRSRWGMETAMGAGPQLAPM FT GRGLNPELQPYVTPPPVPPASAITTTNVATTITTAANTPAAIAATNHAASN FT PAVPAQPGQAAPATAAMVGPQQAPPQLQAPPQLQAPPQLQAPPQLQAPPQL FT QAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAP FT PQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPQLQAPPPP FT PGPCRCSPPPVRPRNSQAPRRRQQLYKG" FT CDS 2464..7203 FT /product="L1-3_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MPSRGTRRSQQQNAVQGHPLRIATHNMHGLLATHGNR FT LQAAVRQWAEMRLDVVCLQETHHTNIQHQCLFERDLRQAAMRVHSQGWRVA FT AHSWSSSTHTAGVLILVRQGLAAALEPPPNTTRQACMQGRFTECVLRWGGH FT RLHICNVYLPTGSSTVAADARRLLFSKVLAATSTKAAAPDSDTTLIWAGDF FT NFVENPELDSSAGPEGRRGDGPIADMRRQAGPTMVDTHRHFHPTRRDFTHL FT YRAPTPGGSRIDRIYINQPKLTYVCHTSVTFHTPSDHRIATLHLLPCRSEE FT RGPGVRRVRLAFTAHEDLSSSMDTWIRSQCMEAPSAEDNPAGLIAWWPGFK FT RRLATLAHRLNKAAQQRRRRPGTRAREAIAAVQRAQQAVDAAPTAPQPLQQ FT LADAQAALARAHQEDGSMAAKEARAHWLRAGERTGPALTAFLKAQAAEQQP FT APVALQAHSGRLVTNPAQLPQVVADYWAEISRAPDFISPSARQEVLAQLSA FT ANISLPANADEQLGSKTITAAELRVALVKSQPGKAPGWDGIPADLYRKFWS FT TIGNTMAGLFTAIGATGQVPTGFLEGIITVLYKKGDPKQPGNYRPITLLCA FT DYRLLAKVLANRLGPALGRIITPEQSAFLPKRLIGASVMFLRHLSHLLRKQ FT NRRGLLAFLDFAKAYDTVDRDFLLAAMEAMGAGPQLCSWVRLLLSNTQARA FT MVNGFKSRLVGMEAGVRQGCPLAPLLYLFIAQALLCWLRSRDVGVKLRPND FT QDRVTACQFADDTEVALEGEESVPSFLEAMETFARASGQRLNVEKVELLRV FT GAENQQQQQQPQPAGRQQLQQPLHQQPQQETIGGLKVVTTATALNLPVDNR FT PTPPQPEWPKMLAGAYKRMQRLARFPLSAFGRATATSAYGLQTVTWHMEHG FT GPPPDSTLDHIERLTARLVDRQQGPEDPGQRLTGVPSSLLVGHPSTGGFGL FT LPLRQHIHARHAVWAVRFIAQALPAAGCEGRGAGGEVTGGAGGDEEVAAAT FT NSEARGLHPWVRTLSAYLELTHPALQPWALTTARATGPWLGSSDLPADISR FT IVGALGHLPPLEDIGRTPLEPGDWCWAAALWGNPLLPNATNAASTEGPSRR FT PGLEAYHAALTPCRKLRTVGDLVRVWEAVNTSQATTLQGAAWHSWAREHLD FT PATDPAQLQDKDAALAALGALHSDISPAWLAAAHAVEIRLRQQQQVEEEGP FT QQQPPAPAATLPDCAQVMAMIIGRLGWRLPGATDAVPLRRLTVSLATQLQN FT GHVDERRIRLMTDFVHEALNTPEAQAQPDNSAEVSRFQATLARLWHGVRWE FT NENKETMWRLAVDGVPLPGNTHLARVPTEPCGCGTYGGAAGRPCPPRLHHF FT WECPVARAVREQIDRHLPHTQTTVGATTTRQQLWLAQAPPGCEQGPWDVIA FT LAALSAMEVGRCCLRAATRRQGRMGATATAGQQQQQQQRQQQRQMMGQPQQ FT QRSRQRAITDFFTPAGGAMQQEGPTLNAPADDGPTQEAGAGGGEAVAAAAT FT AGATGASPLARARARAVADFWARLRSFAMLETPRHGWDRVGPQHPILAVVE FT ERMRCAAPVEITA" XX SQ Sequence 8387 BP; 1761 A; 2771 C; 2646 G; 1209 T; 0 other; gcaaatgtaa tattcgttaa aacgcgacca cgaactgcct atggctgacc tcgccgaccg 60 cggcaaaaac ggagaactct cgaaaattat gcttgagtta atataggcca gaatggcaga 120 aaatgggcag gcgcggacct ccgcgccaaa tgaacgttca aatggacggg cgacagcccc 180 agctgctcgc caacaaccaa gccgcgccca agcggaacga aagtttgtga acatcgacat 240 aataatggaa acggttccag aaggaacacc atttcatgcg gaacaggacc aggttaccat 300 ggaaatccat tggccggccg gttccgaccc cgcggacata caagcccagc tacatggacc 360 agtgggcaag gccattttaa acagattacg ggcgataata ccgcccgttg aggcagaggg 420 gctactcggg ccgcgaatca gcaaatgccc gcaacgggca ctccccagcg gcgtgaaggt 480 gcaagaaatc agcatcttga tccggaaagg tggtctcgca atgcttacca cctcgccagc 540 agtccagaga ggacggcttc acctggggcc agtccatctc ctacccagca gccccccggt 600 ggaagtggag ctgcccatca cgaacctgta caaggcggaa cggccctact gggagatcaa 660 ggggatcccc acctacctgg atcccagagt catccctggt ttccttgccg tctgctactc 720 cactcagtgg ttccggtggg atgaatcaga catccatgag ctgaatccca ctatgatggc 780 agacacctgg cgagtcaagg tggcgcagga cacccccggt ctaccgggtg aaaaacactt 840 cgaactcggc agggcggggg aggcaaccag gtccggcata ctgagggctt ccagactgaa 900 acggaccgat caggagggac ccttcactat gccgtgcaaa gcaccaccaa ggaaggagct 960 ggcgcgccag acacagcagt tacagcaaat gcgacggcag ggccgtactg cacagcctgt 1020 tgctgccccg ggccaaccag gcccctcaaa cgggggaggg ccctcgtatg cagcggccgt 1080 gatgcggtca aggtggggca tggagacggc catgggagca ggaccccagc ttgcacccat 1140 ggggaggggt ctcaacccgg agctgcagcc gtatgtcaca cccccacccg tgccgcctgc 1200 atcagccatc accaccacca atgtggccac caccattacc acggccgcaa acaccccagc 1260 cgccatagca gctaccaatc atgcagccag caaccccgcc gtccctgcgc agccaggaca 1320 ggcggcccct gcaactgctg caatggtggg accccagcag gccccgcccc agctgcaggc 1380 cccgccccag ctgcaggccc cgccccagct gcaggccccg ccccagctgc aggccccgcc 1440 ccagctgcag gccccgcccc agctgcaggc cccgccccag ctgcaggccc cgccccagct 1500 gcaggccccg ccccagctgc aggccccgcc ccagctgcag gccccgcccc agctgcaggc 1560 cccgccccag ctgcaggccc cgccccagct gcaagccccg ccccagctgc aagccccgcc 1620 ccagctgcag gccccgcccc agctgcaggc cccgccccag ctgcaggccc cgccccagct 1680 gcaggccccg ccccagctgc aggccccgcc ccagctgcag gccccgcccc agctgcaggc 1740 cccgccccca ccaccaggcc cttgccgctg cagcccgcca ccagtcaggc cccgcaacag 1800 ccaggcccca cggcggcggc agcagctcta caagggctag gggcacaggc cggccccacg 1860 gtggtggaag aggaaaccac aacccacagg gagcgcgaca ccacactggc ggcaccacgg 1920 gagcaagagc caccagcagc catagccaat acagtcccca ccttccagtt cacagcaggt 1980 aggaaggagc caggtggcag gcaacgggca accgggggca aagctaggca gcagatgtgc 2040 cctgagacga accaggcccc tacaccctct gaggccccaa agaggaagcg gcagcggctg 2100 gagcacctta ctgcggaaga acgggcagag cgaaacaaag cccagacccg caaggccttg 2160 gaggcccgaa agaaaaatgt ggagatacgg agggcacaga gggcagcaga ggaagccgga 2220 gagaagttaa ctgcgcagct gcaaacgggc agccaggccc agccctccga cggcacacag 2280 gtcccaagcc tgcaactgca actgacagct ggagacccgt cccccagcga accccgcgcc 2340 cagcgagcag ccgccgtgca atgccagcaa cacctgagca cccacagccc agcatcaaca 2400 cagggggatg atgaggagga ggaatacacc cctaccgcca tggaggcgga acactccgac 2460 taaatgccaa gcagggggac caggagaagt cagcagcaaa atgctgtgca aggccatcca 2520 ctccggatcg ccacacacaa catgcacgga ctgctggcga cacatggaaa ccgcctgcag 2580 gcagcagttc ggcagtgggc agaaatgcgc ctggacgtgg tatgcttgca ggagacacat 2640 cacaccaaca tccagcacca gtgccttttt gagcgggact tgcgccaagc cgcaatgcgg 2700 gtacatagcc aaggctggcg ggtggcggca cactcgtggt ctagctcgac acacacagcg 2760 ggggtactca tcctcgtccg gcagggcctt gcagcagccc tggagccgcc accgaacaca 2820 acccgtcaag catgcatgca gggccggttc acagagtgtg tgctccgctg gggaggccac 2880 cgcctgcaca tctgcaatgt ctacctcccc acgggctcct caacagtggc agcagacgca 2940 cgacgccttt tgttcagcaa agtcctggct gccacttcaa cgaaagctgc cgctccagac 3000 agcgatacaa ctctcatctg ggcgggcgac ttcaactttg tagagaaccc ggaactggat 3060 tcctcagcgg gcccagaggg ccgacgggga gacggaccga tagccgacat gaggagacag 3120 gcgggcccca ccatggtcga cacccaccgc cacttccacc ccacgcgccg agacttcacc 3180 cacctatacc gcgcgcccac cccggggggt tcccgtatcg accgcatata catcaaccag 3240 cccaagctga cctatgtctg ccacacgtcc gtcaccttcc acacaccgtc ggaccacagg 3300 attgcgacac tgcacctact gccgtgccgg agtgaggagc ggggcccagg ggtccgccga 3360 gtccgccttg ccttcacggc acacgaggac ctttcgtcca gcatggacac gtggatccgc 3420 agccaatgca tggaggcacc atctgccgaa gacaacccag ctggcctgat cgcctggtgg 3480 ccaggcttca agcgccgcct tgccaccctg gcccatcgac tcaacaaggc agcacaacaa 3540 cgccgacgac ggcctggcac ccgtgcccgg gaagcaattg ctgcggtcca gcgggctcag 3600 caagcagtcg atgcggcgcc cacagcaccc cagccactgc agcagctagc ggacgcacaa 3660 gcagcactgg ctagggcgca ccaggaggat ggcagcatgg cagccaagga agcacgggcc 3720 cactggctcc gggcaggtga acggaccggc cctgccctga cagccttcct taaagcccag 3780 gcggccgaac agcagcctgc cccagtcgca ctccaggcgc acagcggccg cctagtgacc 3840 aacccagcac aactgccgca ggtcgtggca gactactggg ctgagatcag ccgagctcct 3900 gacttcatca gccccagtgc ccgacaggag gtacttgccc agctgtctgc ggccaacatc 3960 agcctccctg caaacgcaga tgaacagctt ggctccaaaa ccatcacagc agcggagcta 4020 cgggtcgcac tggtcaagag ccagcccggc aaggcaccag gatgggacgg catcccagcc 4080 gacctatacc gcaaattctg gtccaccatt ggcaacacca tggcgggcct cttcaccgcc 4140 ataggcgcaa cggggcaggt gccgaccggg ttccttgagg gcattatcac ggtgctctac 4200 aagaagggcg accccaagca acccggcaac taccgcccta tcacgctact atgcgccgac 4260 taccgcctgc tcgccaaggt actggccaac cgcctggggc cggccctggg gcgcatcatc 4320 acccccgagc agtcggcctt cctccccaaa cggctcatcg gggccagtgt gatgttcctg 4380 cgccacctat cccacctcct ccgcaagcag aaccgccggg gcctcctggc gttcctggac 4440 ttcgcgaagg catatgacac ggtggaccga gacttcttgc tagctgcaat ggaggcgatg 4500 ggggcgggcc cgcagctatg cagctgggtt cggctgctgc tcagcaacac gcaggcacga 4560 gccatggtca atggctttaa atcaaggctg gttgggatgg aggcaggcgt gcgacagggg 4620 tgccccctcg cgcctctgct gtacctcttc atcgcccagg ccctgctctg ctggctccgg 4680 agccgagatg tgggggtcaa actacggccg aacgaccagg accgcgtcac agcctgccag 4740 ttcgcggacg acactgaagt ggcgctggag ggcgaggagt cagtaccgtc gttcctagaa 4800 gccatggaga ccttcgcaag ggcatcaggc cagcgcctca atgtggaaaa ggtggagctg 4860 ttgagggtgg gtgctgagaa ccagcaacaa cagcagcagc cacaaccggc gggtaggcag 4920 cagctgcagc agccactaca ccaacagccg cagcaggaga caattggtgg actcaaagtg 4980 gtcaccaccg ccacagccct gaacttgccg gtagacaacc ggcccacacc cccgcaaccc 5040 gaatggccca agatgctggc aggcgcctac aagcggatgc agcggctcgc ccgcttccca 5100 ctgtcagcct tcggcagggc caccgccacg tccgcctacg gcctgcagac ggtcacctgg 5160 cacatggaac atggcggacc ccctccagac agcactctgg accacatcga gcggctgacg 5220 gcccgcctgg tcgaccgaca acagggccca gaagacccag gccagcgtct cacaggtgta 5280 cccagcagcc ttttagtagg ccatccgtca accgggggtt tcggcctgct gccgctccga 5340 cagcacatcc acgctcgcca cgcagtctgg gccgtgcgat tcattgcaca ggcactaccg 5400 gcggcaggtt gtgaaggtag gggtgcggga ggggaagtaa ctgggggagc aggcggggac 5460 gaggaggtgg cagcggcaac caacagtgag gcccggggcc tacacccctg ggtacgcacg 5520 ctgtccgcct acctggagct cacccaccct gcactccagc cttgggctct gacaaccgcc 5580 cgggccacgg gaccgtggct cggcagcagc gaccttcccg cagacatcag ccggatcgtg 5640 ggggcactgg gtcacttgcc gcctttggag gacattggca gaaccccact ggaacccggt 5700 gattggtgct gggcggcggc gctgtggggc aacccactgc tgcccaatgc gaccaatgct 5760 gcaagcaccg agggccccag ccgtcgacca ggcctggaag cataccacgc agcactgaca 5820 ccatgcagga aactacgcac ggtgggggac ctggtacggg tgtgggaagc ggtaaacact 5880 agccaagcca ccaccctcca gggagcagcc tggcattcgt gggcccgtga gcacctcgac 5940 ccagccacag accccgccca gctgcaggac aaggatgccg cccttgcagc tcttggagcc 6000 ctgcacagcg acatcagccc ggcctggctg gcggcagcac acgcggtgga gatcaggctg 6060 cgacagcaac aacaagtgga ggaggagggg ccccagcagc agccaccagc accagcagcg 6120 acactgccag actgcgcaca agtgatggct atgatcatcg ggcgcctggg gtggcgcctc 6180 cctggggcga cggacgctgt gccgctccgc cgcctaacgg tcagtctagc gacacagcta 6240 cagaacgggc atgtggacga gcggcgaata cgcctgatga ccgacttcgt gcatgaggcc 6300 ctgaacacgc ccgaggccca ggcccagcct gacaattctg ccgaggttag ccgctttcag 6360 gcaaccctgg cacgtttgtg gcatggggtg cgctgggaga atgagaacaa ggagaccatg 6420 tggcgtctcg ccgtggatgg cgtgccccta cctggcaaca cgcacctagc ccgggtgccc 6480 actgagccat gcgggtgtgg gacctatggg ggcgccgccg gccgaccctg cccaccgcgt 6540 ctgcaccatt tctgggaatg tccagtcgca cgtgccgtac gggagcagat cgacaggcac 6600 ctgccacaca ctcagacaac agtaggggcc accaccaccc ggcagcagct ctggcttgcc 6660 caagcgccac ccgggtgtga gcagggccct tgggatgtga tcgccctagc ggcgctatcc 6720 gccatggaag tcggcaggtg ctgcctccga gcagcaaccc ggcgacaggg acggatgggg 6780 gcgacagcaa cggcgggaca gcagcagcag cagcagcagc gacagcaaca gcgacagatg 6840 atggggcagc cccagcagca gagatcccgc cagcgggcca tcacagattt cttcaccccg 6900 gcgggaggtg caatgcagca agaaggaccc accctaaacg ccccagcgga tgatgggcca 6960 acgcaggaag caggggcggg agggggcgag gcggtggcag cagcagcaac agcgggcgca 7020 acaggagcct cgccactggc ccgcgcacgc gcccgggcgg tggcagactt ctgggcgcgt 7080 ttgcgctcgt tcgcaatgct ggagaccccc agacacggct gggacagagt cgggccgcag 7140 caccccatcc tggcggtcgt ggaggaacgg atgcggtgcg cagcaccggt ggaaatcacg 7200 gcctaaatag ccgagataga gtcgggtcga ggtcttaccg gaaagggagc agggagagtg 7260 agggaggggg tgagagagcc aggagtaggg ataggtgagg gagcgaggag agcagggagg 7320 ccctgggcag ttggagggct gggcgagagg gcagtgccct gagcgtggtc tagcaggggg 7380 agttgaggat ccgggctgtg tgtgttttgt gtactcgtgt ggttgccctc tccccgggaa 7440 ttggggcccg tcggagtgag gggaatgggt tctgtgctgt ctggcatcag agtagagaag 7500 acgtaggtgg cttgtgggag tggagaggag gtgggaaagc ggtggaggag agtggtttgg 7560 aggtggagaa caggtgttgc tggttccggc cggtcagggt caggagggga gggatttcgg 7620 tgtggtaagc gggagcaggc ggcgtctgtg agccgtgcct tttccgggct ttataggggg 7680 gcgccgtgct ggcttgtcat cccccccgcg gctataggtg tttttgctgt gtctcgcgct 7740 gggctgcatc cgagagcccg caacccccag gaggagactg acgtgcggac cagtttcgcc 7800 tcgtttgtga gtggaccggc gaggtagtgg tggccaccct cgggaagtgt tcgttgttcg 7860 ttgctcgtgg tagttgaaca gctggccttc gaggaccagt gtgcgagtac tcgctttgtg 7920 ttggtcttct ctgtgcaacc gtatctcggc ttttgtggtg tgtcgtctca ggcccgtggt 7980 cctccgtgta tctcttgcct tgctggctgc gtggggccct ggttcttttg agtgtgtaga 8040 ggaggccccc gagtagagcc cctgcccccg gtggtgtttt ctttttgttc ttgttttggc 8100 ggtcaagagg gacgagagcg cgtgaatagg caggccaggc gaagtggcgc ctttcgtgcg 8160 gctctcgcat agatcggttc gcagtcttct gcgccgctgt gttgcctagc caggggctgg 8220 gagagtgtcc cggttggcgt gagtgaggga atgaggcgcg cgcggaggaa cagacggacg 8280 tagagccgcg cgcccatccc tgcgctgtgt ttcggcccgg tcagggcccc cggtgctcgt 8340 cctttatcgg gcgagccgcc cacagtgtaa caccccatca acaacaa 8387 // ID Gypsy-5_ES-LTR repbase; DNA; PLN; 280 BP. XX AC CABU01005014; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_ES_; KW Gypsy-5_ES-I; Gypsy-5_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-280 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005014; Positions 53865 54144. XX SQ Sequence 280 BP; 73 A; 61 C; 82 G; 64 T; 0 other; tggtatttgg acccttggac taggatacca tctgggcggg tatatctttc aggaatatcc 60 cgaccacctg cccagattcc tactattccg actttaggga ggtagcagta caatggttac 120 tagcagtagc aagcgagtgc aagcgttcca ccttgctcag tgtcttgcct ggtgttccct 180 ggtgttgctt gggagtgagc gatagcgagc gactgagaga gaaaggaagg ataaggaagg 240 aaacagactg aagaagcgaa gcggctccaa cctggtaaca 280 // ID Copia-43_PIT-I repbase; DNA; PLN; 5454 BP. XX AC AATU01002519; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-43_PIT_; KW Copia-43_PIT-LTR; Copia-43_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5454 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002519; Positions 41999 47452. XX CC Positions [1880-2389] - Integrase core CC 'TAGA' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 41..4483 FT /product="Copia-43_PIT-I_1p" FT /translation="MVKGHNRSAQVLGLEKFHGEDYTMWRDKVLTHIETLD FT EKYQRGLLEKDQPEATVVMMDFLEGTPEKPIISVEGNISQEEAKAKRWRHQ FT HWTRARSELLNLFNQALPNVFLSGLPDQVFRMNPCDIWKELEQKYGLGDAG FT GVIELRRQWERLLAANWTNLGALFAQLKKLRNDINRKMRGLVGKDMVTETW FT LCMEVLALLPSEFWGGTIIMTEEWFSIENVETSLRRVFGDRSRKEATMLTD FT KRRPVTVNAARKFTGKKRNQGQSSEVAVSECFYCFEDGHWKKACPVLAADR FT NPKRAGGKLLRSNIRAAPVTETKRAMTVKKGGKSTTKRMKVNQDEERTPAQ FT AAKFDLNLNEAIEDADELEYKGSVPASEGSEDEAPMHSMEIDDEVRRRYPE FT YLSKLRELNLTDDLWVVDTGAGHAISSDRRWFSQLGKGRTHIFEYGNGGTS FT STKLQGTVRFSILKPRGYYSDFSIQNVAFDKECGSNLLSAYYLATQGYHHI FT QSKGGQYLYFLDSKNRFIFAAVAIDEVYNLPSRKLDNNSRVLSVDSTSQSK FT IQKTLKEWHLRLGHVGKGRLMNILAGRVIRDAPQLSRKKMELVSFFCRTCV FT LAKSRRMSYRNKVTDKVSEPLHTLHMDSLGKIRPQGLYNTTGHKYALAIVD FT DATAYKWYFVLKSLKEVGVIVKTLIKQLEKQFPYKVKRIRTDGGTEFVNEF FT LKGYCDRSGIVFQKSNVESQEENGSAERAHQTIMGKVRCALIGSGMAAKWW FT PEALKYMTAITNRIPTARLKGKSPYEALFGTKPTGIELHIWGSTCYAHVPK FT SKRPNPKLSERALECKLLGLSEDYKGYRLLDIKGNRYINARDVKFGPTFTE FT GLILRSFPSGKIEENEEIILEVGEKGKRKRETGLDVSNKRPKSNSELEECA FT PDTETVGVKKQRVSVPPIPRSRRKRTPNSRLKDYLVSINAVTISTKVIPIP FT RSIKEARRGPHAQQWETALQAEFQALVANSTWEIVPLPKGRKILGCHWVFD FT VKYNPDGTVDRFKARLVVRGNTQTHGVDYNEIFSPVARYESLRLLLAIATI FT KDLHVHQMDVSTAFLNGSLLEDIYMQQPHGFRHGDASSVCKLKKSLYGLKQ FT APRIWYALLNKFLVSLGFCRCKKEYCLYRQKWEVKGVTHIVLVCVYVDDIT FT IASSSMTLMQKVKSQLASRFTMKDLGDIHYLLKMEIKRDRANMILSMSQHK FT YIMDLLQKFDMTDCNSEPTPQAKSIVLEKEEKLSPDEISAQPFDYRGSVGS FT LMYLVRGTRPDIANAIRELSKFLSCYNKSHYRAAQRVLKYLKGTSTYGLVF FT DGKSKEVIYELYTDASFANANENRKSVTGYVSIMADACITWKSSRQSTVSL FT HTAQAELIAASEGIKESEWLWVLLEELGFKQTQPIMCWCDNKGAISIIKDP FT ANHTSTKHIDIKGLYAREIHDKGRIVVSYCNTNDMIADALTKALPQTQFEK FT LRSLMGVKNLCLPLPQ" XX SQ Sequence 5454 BP; 1742 A; 1021 C; 1444 G; 1247 T; 0 other; tagagcttaa tatttcagat acgtacggag actaaggccc atggttaaag gacacaatag 60 gagtgcccag gtcctgggac tggaaaagtt ccatggggag gactacacca tgtggcgaga 120 caaggtgcta acgcacatag agacgctgga tgagaaatac cagcgagggt tgttggaaaa 180 ggaccaacct gaggctacgg ttgtcatgat ggacttcctt gagggtacgc ctgagaaacc 240 catcatttcg gtggagggga atatttctca agaggaggcg aaggccaagc gttggcgcca 300 ccaacactgg actagggctc ggtccgagct gttgaactta ttcaaccaag cgttgcctaa 360 cgttttcttg agtgggctgc cggatcaagt gttcagaatg aatccctgtg acatatggaa 420 ggagctcgag caaaagtacg ggctcgggga tgcaggaggc gtaatcgagc tgcgccgcca 480 gtgggagcgt cttctcgcag cgaactggac caatctgggg gccctattcg cccagttaaa 540 gaagctgcgt aacgacataa acaggaagat gaggggtctg gttggcaagg acatggtgac 600 cgagacctgg ttgtgcatgg aagtgttggc gttactacca agcgagtttt ggggaggcac 660 aatcattatg actgaagagt ggttttctat tgaaaacgtg gagacgagtc ttcgccgcgt 720 tttcggtgat cgatcgagga aggaagccac gatgctgact gataagagac gcccagtgac 780 tgtcaatgcg gcaagaaaat ttacggggaa gaaaaggaac caaggacaat cctctgaagt 840 ggcagtaagc gagtgttttt actgctttga agatggccac tggaagaagg cctgcccagt 900 gttggcggct gaccgcaacc cgaaaagggc tggaggcaag ctgcttcgct caaacatacg 960 ggcggctcct gtcaccgaaa caaagcgagc gatgacggtc aagaaggggg gcaagtcgac 1020 taccaagagg atgaaggtga accaagacga agaaaggacc ccagctcaag ctgccaagtt 1080 cgacctcaat ttgaacgagg caattgagga tgccgacgaa cttgagtaca aggggagtgt 1140 tccagcgagt gaaggaagcg aagatgaggc accgatgcac tcaatggaga ttgatgatga 1200 ggtacggaga agataccctg agtatctttc taaattgagg gagttgaacc tgactgatga 1260 tctatgggtg gttgatacag gagctggaca cgctataagc tcggatagaa ggtggttcag 1320 ccagcttggc aaaggacgga ctcatatctt tgaatatgga aacggaggca cctcgtcaac 1380 caagctccaa gggacagtga gatttagtat tctcaaaccc agagggtact atagtgattt 1440 ctcaatacaa aatgttgcct ttgataaaga gtgcggtagt aacttgctta gtgcatatta 1500 tcttgccaca caagggtatc accacattca gtcaaaaggt gggcagtatt tgtacttcct 1560 tgatagtaaa aaccgattca tatttgctgc agttgcaata gatgaggtat acaatttacc 1620 gagtaggaaa ctggataata attcaagagt actatccgtc gatagtactt ctcaatcgaa 1680 gatacaaaag acgttgaagg agtggcacct gaggctaggt catgtcggta aaggcagact 1740 gatgaacatt ctggctggca gagtaatcag agatgcaccc cagttatcta gaaagaaaat 1800 ggaactggta tcatttttct gtcgtacatg tgtgctggca aaatcacggc gaatgtctta 1860 taggaataag gtgacagata aggtatctga gcctttgcac acactgcata tggactcatt 1920 gggaaaaata agaccacagg gcctctataa tactaccggg cacaagtatg ctctagcaat 1980 agtagatgat gccactgctt ataaatggta tttcgttctg aagtctctga aagaggttgg 2040 ggttattgtt aaaaccctta ttaagcagct ggagaaacaa ttcccataca aggtaaaacg 2100 gataaggacc gacgggggta cagaatttgt caacgaattc ttaaaagggt actgcgatag 2160 aagtgggatc gtgttccaaa agtcaaatgt agagtctcaa gaggaaaatg ggtctgctga 2220 gcgagctcac cagacaataa tgggtaaagt tagatgcgcg ttaataggat cgggtatggc 2280 tgctaaatgg tggccagagg cattaaaata tatgacagca ataactaata ggataccaac 2340 agcccggctt aagggtaaga gtccatacga agcactgttt ggcaccaaac caacaggaat 2400 tgagcttcac atatggggca gtacgtgcta cgcccatgta ccaaaatcta aacgacccaa 2460 tccgaagctt agtgagcggg cgctagagtg caaacttctc gggctttctg aagattacaa 2520 agggtatcgt ctactcgata ttaaaggaaa taggtacatt aacgctcgag atgtaaaatt 2580 tgggccaaca tttactgagg gactgatttt acgatcgttc ccgtccggga aaattgagga 2640 gaatgaggaa ataatcctag aagttgggga aaaggggaaa agaaaacgag aaacggggct 2700 ggatgtgtct aacaagcgac caaaatcaaa ttctgagctg gaagagtgtg caccggatac 2760 tgaaacagtg ggagtaaaga aacagcgagt ttctgtgcca cctatacctc gcagtcgtag 2820 gaaaaggaca ccaaattctc gtttaaagga ctatttagta tcaatcaatg ctgtcacaat 2880 tagcacaaag gtgataccga ttccacgatc aataaaagaa gcgagacggg gaccacacgc 2940 tcagcagtgg gagactgcgc tgcaagctga atttcaggca ctggttgcaa atagtacttg 3000 ggaaatagta ccattgccaa aaggaaggaa aatactaggt tgtcactggg tatttgacgt 3060 gaagtataac ccagatggaa cagttgatag atttaaggca agattggttg ttaggggaaa 3120 cacacaaacc cacggtgttg attataatga gatattctca ccggtggcgc ggtatgagtc 3180 gttgagatta ctactggcaa tagcaacgat aaaggacctt catgtccatc aaatggatgt 3240 gtcaacggcc ttcctaaacg gatcgctgct tgaggatatt tacatgcaac aacctcatgg 3300 gtttaggcat ggggatgcgt ccagtgtgtg caaactgaag aaaagcctat atggactcaa 3360 acaagcacct cgcatctggt atgcactcct caataagttc ctggtaagcc tagggttttg 3420 tcggtgcaaa aaggagtact gtttgtaccg tcaaaagtgg gaggtaaaag gagtaacgca 3480 tatagtactg gtctgcgtct acgtggatga tattactata gcatctagta gtatgacatt 3540 gatgcaaaag gtgaagagcc aactggcttc tagatttact atgaaggacc taggtgatat 3600 ccattatcta ctgaagatgg agattaaaag ggatagggca aatatgattt tgagtatgtc 3660 ccaacacaag tatataatgg acttactaca aaagttcgat atgactgact gtaactcaga 3720 accaacacca caggcaaaga gtatagtact tgagaaagag gaaaaattaa gtccagatga 3780 aatctcagca caaccattcg attacagagg ttcagtgggt tcactgatgt accttgtacg 3840 tggtacacgc ccagatatag caaatgctat cagagaatta agtaaattcc tgtcatgcta 3900 taataagagc cattacaggg cagcccagag agtactaaag tatctgaaag ggacgtcgac 3960 gtacggactc gtatttgacg ggaaaagtaa ggaagtgata tatgagctgt acacagacgc 4020 gagcttcgcg aatgctaatg agaaccgaaa gtcagtaact gggtatgtga gtattatggc 4080 agacgcgtgt attacttgga aaagttcaag acaaagtact gtgagcctcc atacagcgca 4140 ggctgaatta atagccgcga gtgaaggtat taaagaaagc gaatggttat gggtactatt 4200 agaggaattg ggatttaagc aaacacagcc gatcatgtgt tggtgtgata ataagggggc 4260 aattagtatt ataaaagacc cagcaaatca tacatcgaca aaacacattg atatcaaagg 4320 actgtatgct cgagagattc atgataaggg aagaatagta gtttcatact gcaacacaaa 4380 tgatatgatt gcagatgccc tcacaaaggc actgcctcaa actcaatttg agaaactcag 4440 aagtctcatg ggggtaaaga acctatgcct ccccttacca caataggtgt ggggtatttg 4500 gactttctga caccgtgtat cacaagatac agtgaagttg aagagccacc atgtggcata 4560 tccaagcgcc cggcgcaagt tgaagttcaa agatacttct caagttgaag ggcgaaagat 4620 actcttaagt tgaagtgcac caaggaaaag acttatgcgg ttaaagcaaa aaaaaaaaaa 4680 caataagacg taacgttatg atattggtta actctcagac gttcacatgt caatggttat 4740 ggactagact acgacagaac acgataacgt gctgaaatca agtaagagcc accgttgacc 4800 gcatctagga agggaggggc aagccccagc cgtgcttaat tggaactaat gccgaagcgc 4860 tccccagtct ctggaagtgg tggtatcaca gaccgaagcc tggacgtttt gcttgactgt 4920 catagccccc ccggagggtt taatagcggc cataggcgct aagtcgaacc gtgaatgctg 4980 aacgcaaatt tgagagtgaa tggattgaag gaaattggtt ccagcaaaga caaaaaaggt 5040 agaggtgcaa tttagaggca gaaaccatcg ggaaatcgga aaaggaaaat tggttgggtc 5100 acaaattctg gattaaggga ataggtatgt gtaatggaac gtcacaaatt tcaggtgtcg 5160 caacatttag gagccaccta ttttggatca ccggatgtgt gaaaagtcgc cacaacgaaa 5220 ggtcacatga tatctccaaa aggtcgcaac ttgatttaga ataaagtaga tcatatgtga 5280 tcaaaacagg ataggaaaga gtgtgttcac tattaggaaa accagaagta gcccaaaagt 5340 acgaaaggtc gtatggtatt tctgctggac aagtcgcaat tggattaagg ataaggcgag 5400 tcatatgaga ccacagaagt gaaaaggagg atgtgcttga acttttagtg ggag 5454 // ID Gypsy-50_PIT-I repbase; DNA; PLN; 8111 BP. XX AC AATU01003154; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-50_PIT_; KW Gypsy-50_PIT-LTR; Gypsy-50_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8111 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003154; Positions 33117 25007. XX CC Positions [5898-6422] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 258..2099 FT /product="Gypsy-50_PIT-I_3p" FT /translation="MAKRAARAARRSSTPTSSTTTTSATTRRSSTTPVAPR FT KTRQPRTRIRLNTGDGNGGNDEVAVSSSVTIAPAGDDGSGDSSDDDAEDDA FT SRAGGQRSDGNGGADNGNNSNRGGGGRDGRSPNDHTARGTGASPANPTQTA FT DDELESMAWWDALTPGQQRAMMKRFVVQPPAPAPAPSTQQPIVIQAPPSSD FT QPRRHKMKRLHIEDFSGKSSESVEAWLATIPQEVERQAGLGGDSWTAEELY FT YEATAHLKDAASKWLITLTEHMQPEDRNLSYLVRKMRKKYGSRDNMFRIQQ FT RLAARVQQPGERLSDYAASLTNIGFGKRIPAESYVEAFINGISNETTATQV FT RAYEPQTLDEAVQFAEDKCGEYGEGFKVTDWRVAKRRYRENREYGEEGDAS FT PPKKKSTNEAAEQLDWRQLGLGFGGEEPPSVDTNGEAVSGLAKTAKKDPLS FT LAALQALMLVSAGLGKDSAKATSGNLKAAQARKIIEAENNSATGNQQPGND FT AAAGTRWQGQNRNGNTGGGSSFNGGGRGGGGRGFGGGRGRGGRTGLENYGP FT QDTRFILQRKAESACNYCGEVGHWWRECHKRLADEETAKRHQTVPAVTSDP FT GANGAAVAATTTAPGN" FT CDS 5262..7934 FT /product="Gypsy-50_PIT-I_4p" FT /translation="MTAKEPAGRLHRWALTLQEYDFDILYRPGRENHVADA FT LSRGPAGDAAVTDKDGESKEDPDIGGVQEVRSRDEVEAEVAAEIGRLAAEA FT SGVATVNRVDSAELGIVQLTDQDIKREQGRSNMVQKLKEQGQYRGRRVFED FT EDGMVKVGITPGEERILLPTAYWALAFKEAHDSIWTGHLRGPQTNERLRRL FT YWWPGMSRTVSSWVSACQDCGSRKARPKAVVPPLRSVRTGDVCDRWAIDVA FT GPLPVTPNGKRYVIAAVEYTTRYAVAEAVAGHTAKEIARFLMEKVVLVFGP FT MREIMMDGAMEFSSQATAELLQLLQAKQSTPVPYRPNLLGLVERSHRTWKD FT IVSLYVGEGQDDWDDFLPSALYAYNSAKHATHGYQPNELMMGRKLRTPAEL FT LRKSRLVYPHSTLQEYHRVLLEDLETARELAALALAKEQARQAMYYNQRKV FT CTGRDFRPIQLVWVYRPARGPGITKFGHRWRGPAQIIEAAGYDNFRVKMLE FT SGKELVTHCSFLISYYYPTNLLEEMARDIAADLQEEAVAAADADSEDDDGD FT EPEIAATEAAEDRAAAAAGASGGASTTDGDGRSGAIATSDTSQVAADSAGQ FT QVTSTTDVPTRKTAPSKRRATPTAQQDQDDEDDDGHGEQSRGRAPPRKRVR FT FTARAAVDPNADTIASRTRARQRRAPYTDAVPSVGDETNAAAASRTTHTPE FT DASGVSAEQPATSGRVRGQADAPAHGGLRPAPDTTTSGDDGGARYTATAAA FT DAPARGRAVGPPDEEDEEPTIYVFAGRGRRGVDSLVSSRPRLSRWRPDDVV FT VERRRRRCRTRTGRYILEFEAERLGDRLDPDGPQKLWINQADYEELWRQGR FT VHTGADEDSDDSDQDQEGDDSEDDSDGAGNAIPREPAH" FT CDS 2860..4980 FT /product="Gypsy-50_PIT-I_1p" FT /translation="MVGVRPAVHGEMPCGLKEEGSLADMRAARKQAVKEAK FT AYRRAKRVRRLQRYRQQEKQRRIEATKLMKLMDEKCKPKKKYVYEKSGNYG FT DVEIAAGEDGRELRVAQLRAAGAGSTSCLPTALLAFTRAHTQEVRLDSCAQ FT FSVAGVDLRRYGRCITRDAPVDVVEGFGGGRTRVLGVWRFLGTTQYQQRVT FT IDALVVDGQGDEFLVGEDWMVERQVKMDFSTRELKYREADGTKVILPFTCH FT GVSSLQLEGAGRSAMVRLAKTVKLTTNTQSVVRVTVDAEDGTTGVFVPKPS FT SKRHLLMAPTLDTVRNGTVRIAVMNLEGRREKMPAREALGTWVPTEEVMKI FT LSLNGDLEQTRVAEWVKTLSTEEALPLTDEDKLDIGDMEPSDRELVVALLR FT RYRGIGEKKKGCPPLAKTNVQHHINTGDTAPIMLGRRRHAVSEYELIDNEV FT DTMMEQDVIDKGEGAWGFPVVIVKKKDGSVRFCIDYRALNAVTTKDVYPLP FT RVDETLEALHGSRRFTSLDLHAGYWQLAVAPEDRQKTAFTTRRGLFQFKCM FT PFGLCNAPSTFQRLMDCVLRGLTWVCCLVYLDDVIIFTKRTVAQHVVELAV FT VLERLAEAGLSLKASKCSFAATRMEYLGHDLTTEGIQPTNRLIKAIVEFPR FT PQDEAQVRRFVALTGYYRRFVPEFGTQMAPLTSLLRKTTEWTWGDAQEEAF FT TWAKSMA" XX SQ Sequence 8111 BP; 2136 A; 1924 C; 2800 G; 1251 T; 0 other; tatttcgaga agcttacttg gtggtcatac aggggccttc tattgaagct tggccctgtg 60 gcacgaaccc cgccacgagg aagaagagag agagagacga gtgagtgagg aagaggaagg 120 ggaagaggaa gagggagaag aaggggaaga gaggagaaga gagagagaga gagacgagtg 180 agagagcagg aagaggaaga gagaggagaa gagaagcaga cgctgaatgg acgaggaaga 240 caacgcagca gacgacaatg gctaagcgag cagcccgtgc agctaggaga tcgagcacgc 300 cgacgtcgag cacgacgacc accagtgcaa cgactcgacg atcatctact acgccagtag 360 caccgaggaa gacgcgccag cctagaactc gcatccgctt gaatacgggt gacgggaacg 420 gcggcaacga tgaagtggcg gtgagcagca gtgttaccat cgcgccggct ggtgatgacg 480 gaagtggaga cagcagcgac gacgatgcag aggacgatgc cagccgagca ggtggacaac 540 gaagcgatgg aaacggtggc gccgacaatg gcaacaacag caatagaggt ggcggcggac 600 gtgacggtag gtccccgaat gaccacaccg cccgaggaac aggagcatca ccggcgaacc 660 cgacgcagac agcagacgac gaactggaat cgatggcctg gtgggatgcg ttgacaccgg 720 ggcagcagcg tgcaatgatg aaacgattcg tggtgcagcc accagcccca gcaccagcac 780 catcgacgca gcaaccaatt gtgattcagg ccccaccatc ctccgaccag ccacgcagac 840 acaagatgaa aaggctgcac attgaagact tcagcggcaa gtcgagcgag tccgtggaag 900 cgtggctagc gacgatacct caggaggtag aacggcaagc aggccttggc ggtgactcgt 960 ggacggccga ggagctgtat tacgaagcca ctgctcatct gaaggatgca gccagtaaat 1020 ggttaatcac gctgaccgaa cacatgcagc cggaagatag aaacctcagt tacctggtga 1080 ggaagatgcg gaagaagtat ggaagccggg acaatatgtt ccgcatccag cagcggctcg 1140 cagcgagagt gcagcagccc ggcgagcgcc tgagcgacta cgcggccagc ctgactaaca 1200 ttgggttcgg caagcgcatt ccagcagagt cctacgtgga ggcgttcatc aacggcatta 1260 gtaatgagac gacagcaaca caagtacggg cctacgaacc tcaaacgctg gatgaagccg 1320 tacagttcgc ggaggacaag tgcggagagt atggcgaggg gttcaaggtc accgactggc 1380 gcgtagcgaa gcgcaggtat cgagagaacc gagagtacgg cgaggaggga gacgcttctc 1440 ctccaaagaa gaaatcgacg aatgaggcgg cagagcaact cgactggaga cagctgggtt 1500 tgggattcgg tggcgaagag cccccgagtg ttgacacgaa tggggaggca gtgagtggat 1560 tggctaaaac ggctaagaag gacccactct cattggccgc cctccaagca ctgatgcttg 1620 tctccgccgg gctagggaaa gacagtgcca aggcgacgtc cggcaactta aaggcggcac 1680 aagcgcggaa gatcatcgag gccgagaata actccgcaac gggcaatcag cagccgggga 1740 acgacgcagc ggcaggcacg cgctggcaag gccagaaccg caacggtaac accggcggcg 1800 gcagcagttt caacggcgga ggaagaggcg gaggcggtcg aggcttcgga ggcggaagag 1860 gtcgtggcgg tcgcacaggc ctggagaact acgggcccca agatacccgc ttcattttgc 1920 agaggaaggc agagtctgcg tgtaactact gcggagaggt aggccattgg tggcgcgagt 1980 gtcataagcg gttggccgat gaagagactg cgaagcggca ccagaccgtg ccagcagtga 2040 ccagtgatcc gggagccaac ggcgcagcag tggcagcgac gacaacggcg ccgggaaact 2100 aggaacggca gtgaaggcgg gggcttcact gtcgcaagac gacgctatcc ccgagataag 2160 agaaggcggc gacgtaaggc tggaggatca cgtaagggtc ttacgagcag cggccgggag 2220 gagaagtgct ctgacccagg ggaagcgtac cgacgtgaga agcggtggta ctgcaaccca 2280 ggggaagagt ggaggaacgg atggccagcg cggcgcagca ggtgtggcga ctggtggcga 2340 gcagaaggag gcgttggacg cagtgaagac ggagacgaag tctcggaagc gagcgaacga 2400 ggtgtgcatg ccggtgatga tgagcccggt ggacgatgac gagttcatgc cggccaagaa 2460 ggtgcgtacg aagaagcaga agctccgggc gaagttgtca cttagcggtg gccgaactgt 2520 atccgaacga aggcgacagc gacgcgcgag cgtgaactta gcggcagtgc acggcattct 2580 ggtgagcaaa ctacgggaac ggcgcgaaga gcgagccaag gtgctgcggg tgattgtgag 2640 gaaagcgttg cgtgtattgg cagaagcaga tgggagcgta cggcgcggtg accacgtacg 2700 gcgcggtgat cacgtacggg cacttcaagt agcggtggcc gctggaagag cagtcgacgc 2760 gccaacgcca aggaagaaga ggagccgcac caagaggtca ggaccggtaa tcgaatcgcc 2820 cggaagtgac gaaacggcag cagaactgga agacgacgaa tggttggcgt gcgtccagcg 2880 gtacatggag aaatgccctg tggactaaaa gaggagggct cacttgcgga tatgcgggcc 2940 gccaggaagc aagcagtcaa agaggcgaag gcgtatcgaa gagcaaagcg ggtgcgacga 3000 ctccagcgtt accgacaaca ggagaagcaa cgccggatcg aggcgaccaa gttgatgaag 3060 ctgatggatg agaagtgcaa gccgaagaag aagtacgtat acgaaaagag cggcaactac 3120 ggcgatgtgg agatcgcggc gggcgaggat gggcgagagc tacgagtggc tcagttaaga 3180 gctgcaggag caggaagtac aagttgtctg ccgacggcat tgctagcgtt tacgcgagca 3240 cacacacagg aagtgcgact agacagctgc gcacagttca gcgttgcagg cgtcgattta 3300 cggcgctacg gtcggtgcat tacgcgcgac gctccagtgg atgtggttga agggtttggc 3360 ggaggtcgaa cacgtgtact gggagtatgg aggtttctgg gcacgacgca gtaccagcag 3420 agagttacga tcgatgcgct ggtcgtggac ggacagggcg acgagttcct ggtaggagaa 3480 gactggatgg ttgagcggca ggtgaaaatg gacttctcga cgcgagagtt gaagtaccga 3540 gaggcggacg gcacgaaggt catattaccc ttcacgtgtc acggagtgag ctcattgcaa 3600 ttggaaggag ccgggcgcag cgcgatggta cggctggcca agacggtaaa gctcacgacg 3660 aatacgcaga gtgtagtgcg cgtcactgtg gacgccgagg atgggacgac gggcgtgttt 3720 gttcccaagc caagcagtaa gcggcacttg ctgatggcgc cgacactgga cacagtgcgc 3780 aacgggacag tacgcatagc agtgatgaat ctggaaggca gacgcgagaa gatgccggcc 3840 cgtgaagcct taggcacctg ggttccgacg gaagaagtga tgaagatcct gtcgctgaat 3900 ggcgatctag agcaaacacg agtggcagag tgggtgaaga cactgagcac ggaagaagca 3960 ctgccattga cggacgaaga taagttggac atcggagaca tggagccgtc ggatcgtgag 4020 cttgtggtgg cgttgttacg acgttatcga gggataggcg agaagaagaa gggatgcccg 4080 ccacttgcaa agacaaatgt gcagcatcac ataaacactg gagacacggc gccgatcatg 4140 ctaggacgaa gaaggcatgc agtgtcggag tacgagctga tagacaatga ggttgacacg 4200 atgatggagc aagacgtcat cgataaggga gaaggcgcgt ggggtttccc cgtggtgatt 4260 gtaaagaaaa aggacggcag cgtgcgcttc tgtattgact acagagctct gaatgcagtg 4320 acaacgaagg atgtctaccc actgccgaga gtggatgaga cgttagaagc gctgcacggg 4380 tcaaggcgat tcacgagtct tgatttgcac gccggctact ggcaactggc ggtggcaccg 4440 gaagacaggc agaagacagc gttcacaacg aggcgtggac tcttccaatt caagtgcatg 4500 ccttttggac tctgcaacgc accgagtaca ttccaacgac tgatggactg tgtgctacga 4560 ggtcttacat gggtctgttg cctggtctac ttggacgacg tgatcatttt tacgaaaagg 4620 actgtggctc aacatgtggt cgaattggca gttgtattgg agcgattggc agaagctggc 4680 ctgagtttga aagcgtccaa gtgttccttt gcggcgacgc ggatggagta tttagggcat 4740 gacctaacga cagaagggat ccagccgacg aaccggctga ttaaagcgat tgtagagttc 4800 ccccgaccac aagacgaagc gcaggtgagg agattcgtgg cattgactgg ctactatcga 4860 cgatttgtgc cggagtttgg gacacagatg gcgccgctga ctagtttgct gcggaagacg 4920 actgagtgga cttggggaga tgcacaagag gaggcgttca cgtgggcaaa aagcatggct 4980 tagtacaaga cctgtcctta tctaccctga ctacaaattg cccgttcaag ttaacgacgg 5040 acgcctcgaa gaccggacta ggagaagtgc tatcgcagga ccaaggacgt ggcgaccaac 5100 cggtggcgta cgcctccaag gtcaatagtc cgacggtcgc caactacagc atttcagaat 5160 tggagtgcct ggcagtagtg tgggcagtga ggctgttcag acctcatctt tacggaagga 5220 agttcacgat tgtgacggac cacattgcgt tgaagtggct catgacggcg aaggaaccgg 5280 cgggtagact gcatcgttgg gcgctcactc tgcaagagta cgacttcgac attctatacc 5340 gtccgggtag agaaaaccac gtggcagacg ctttatcccg aggaccagca ggtgacgcag 5400 cagtgactga taaggacggt gagagcaagg aggaccccga catcggagga gtgcaagagg 5460 tgcgctcccg tgacgaagtg gaggccgagg tagcggctga aattgggcga ctagcagcag 5520 aagcgagtgg agtagcgacg gtgaatcggg tcgacagcgc agagttaggc atcgtgcagc 5580 tcactgatca ggacatcaag agagagcaag gacgatcaaa tatggtgcag aagttgaagg 5640 agcaaggaca gtatcgagga cggcgcgtat tcgaggacga ggacggcatg gtgaaggtgg 5700 ggataacgcc tggggaagag cgcatcctat tgcctacggc gtactgggca ttggcgttca 5760 aggaggcgca cgacagcatc tggacgggtc acctacgggg accacagacg aacgagagac 5820 tacgccggtt gtattggtgg cctgggatga gcaggacggt gagcagctgg gtatcagcgt 5880 gtcaagattg cggctcgcgc aaagcacgac cgaaagcagt ggttccgcca ttacggagtg 5940 tgcgcactgg agatgtttgc gacagatggg cgatcgacgt tgccggccca ctaccggtga 6000 cgcccaacgg caagagatac gtgattgctg ctgtggagta cacgacgcga tacgcggtcg 6060 cggaggctgt cgcggggcat acggcgaaag agattgcgcg gtttttgatg gagaaagtgg 6120 tgttggtctt cggccccatg agagagatca tgatggacgg cgcgatggag ttcagcagtc 6180 aagcgacggc ggagctgctg cagctattgc aggcgaagca gtcgacaccg gtgccgtacc 6240 gaccgaacct gcttggactt gttgaacgtt ctcacagaac ctggaaggac atcgtgagtc 6300 tgtatgtggg cgaagggcag gatgattggg acgattttct gcctagtgca ctatacgcgt 6360 ataactcggc gaagcacgcg acgcatggct accagcctaa cgaactaatg atgggccgga 6420 aattacggac gcctgcagag ttgctgagga agagtcggtt ggtgtacccg catagcacat 6480 tgcaggagta ccatcgagtg ctgctcgaag atttggagac ggcgcgtgag ttggcggcat 6540 tggcgctagc gaaggagcaa gcaaggcagg cgatgtatta caaccagagg aaggtatgta 6600 caggacgaga ctttagacca attcaattgg tatgggtgta caggcccgcg cgaggaccag 6660 gcatcaccaa gttcgggcat cgctggcgtg gacctgcgca gatcatagag gcggccgggt 6720 atgacaattt ccgagtgaag atgctggaat cgggaaagga gctagtgacg cattgctcgt 6780 tcctgatctc ctattattat ccgacgaatc tgctggaaga gatggcgcgc gacatcgcag 6840 ctgacttgca ggaggaggca gtcgcggcgg ctgacgctga ttctgaggac gacgacggag 6900 acgaaccgga aatagcagcg acggaggctg ctgaagatag agcggcggca gcggcaggag 6960 cgagtggtgg agcgagcacg acggatggag acggacgcag cggggcgata gcgaccagcg 7020 acacaagtca ggttgctgcc gacagcgcag ggcagcaagt caccagcacc acagacgtgc 7080 cgacgcggaa gacggcccca agcaagcgac gtgccacccc gacagcacag caggatcagg 7140 atgacgaaga cgacgacgga cacggggagc agtcgagagg ccgtgcgcca ccacgcaagc 7200 gcgtgcgctt cacggcccga gcagcagtcg accctaacgc agacaccatt gctagccgaa 7260 cgcgagcacg acagcgaaga gctccgtaca cagacgcagt gccaagtgtt ggtgacgaga 7320 ctaacgcagc agcagccagt agaacgacgc acacaccaga agatgcgagt ggtgtcagtg 7380 ccgaacaacc agcgacaagc ggaagagtac gaggacaagc cgatgcacct gcccatggag 7440 gcttacgacc agcaccagac acgacgacca gcggagatga tggaggagcc agatacacag 7500 caacagcagc agcagacgca ccagcacgag gacgagcagt cggaccacct gacgaagaag 7560 atgaagagcc gaccatttac gtgtttgctg gacgagggcg acgcggtgtc gacagcttgg 7620 tgtcttcacg tcctcgcctc agcagatggc ggccggacga cgttgtggtt gaacgccgcc 7680 gccgacgatg tcggacccgc accggccgat acatactgga gttcgaagct gagcggctgg 7740 gtgatcgact tgacccagac ggcccccaga agctctggat caaccaagca gattacgagg 7800 agctgtggcg acaaggacgc gtgcacactg gtgcagacga agattcggac gacagcgacc 7860 aagatcaaga aggtgacgac agcgaggatg acagcgatgg tgcagggaat gcaatcccac 7920 gtgagcccgc gcactaactg catggcgaag aaggcctagc agcacaagaa gatggcggcg 7980 atggacgagc ggattagcgg attaagagac agcggatacg gtggcaagga cagcggcgat 8040 ggacgagcgg gttagcagtg acgatggacg aatcgcggac gattcgtagg caggggaaga 8100 gagtaagcgg a 8111 // ID DNA-2N_PPa repbase; DNA; PLN; 426 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-2N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-426 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1013-1013 (2010). XX DR [1] (Consensus) XX CC TIR is 56-bp long, TSD is unclear. XX SQ Sequence 426 BP; 156 A; 72 C; 60 G; 138 T; 0 other; agagaattgt taatgctaca tctccaattg atattgctac accccacgtg acctccacac 60 aacttaaatt gactaaaaag cgcgcttcta tgcttagggc gtatttggca gcccaatatt 120 taatcccaat attgatccaa aaatagaata aattaaaaaa ataatttata ttttgtagcc 180 atttttttta aataaaaata attttaaatt aaaatttttg aggcaaatat tttatttttt 240 aaaaaacagc ttgcaaccta ttttttataa aatattcatt gtctccctct caaccaccac 300 cctttcttaa agcaaagaaa ggaaaaaatg tgcaaaagaa agaggcatat tattagctag 360 ttgtctacaa ggaggtcacg tggggtgtag caatatcaat tggggatgta gcattaacaa 420 ttctct 426 // ID Gypsy-8_PR-LTR repbase; DNA; PLN; 341 BP. XX AC AAQX01000136; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PR_; KW Gypsy-8_PR-I; Gypsy-8_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-341 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000136; Positions 6786 6446. XX SQ Sequence 341 BP; 94 A; 101 C; 65 G; 81 T; 0 other; tgtaaggatc gagacgtgac gagcacgtca aggcccgcat atccaaacta caacatccac 60 tattacgcaa agacaagtgg gtaagtaaag accatgcact gtggtgcatg atctctgtcg 120 tgcacattta cttttgtata gcgcacgtca acccacttca acttgaagtg gattgaccaa 180 tcaaattcat tcattttagc accgccttgg gcactgccca gacggccggc cacagggcct 240 taaccaacta atatcacttt gcaatttgcg tctaaccacc tacacgcttc cacatcgcgg 300 actaccttca ctcgcggcct tcaactagct caagccttac a 341 // ID ROMANIAV1 repbase; DNA; PLN; 623 BP. XX AC AJ002621; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE Abies veitchii gypsy-like retrotransposon, Romani-Av1, a portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW gypsy-like LTR retrotransposon; ROMANIAV1. XX OS Abies veitchii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Abies. XX RN [1] RP 1-623 RA Schulman H.A.; RT "ROMANIAV1."; RL Direct Submission to Genbank (03-NOV-1997)Schulman A.H., RL Institute of Biotechnology, University of Helsinki, P.O.Box 56 RL (Biocentre 1A, Viikinkaari 9), University of Helsinki FIN-00014, RL FINLAND. XX RN [2] RP 1-623 RA Suoniemi A., Tanskanen J. and Schulman H.A.; RT "Gypsy-like retrotransposons are widespread in the plant RT kingdom."; RL Plant J 13(5), 699-705 (1998). XX DR GenBank; AJ002621; Positions 1 623. XX SQ Sequence 623 BP; 160 A; 115 C; 177 G; 170 T; 1 other; tcggccagtg tatgtggatg acgtgttggt ttacagccgc acctgggagg aacacctcca 60 gcatctagac gaggtgatgg gcatattgga caagcaggag ttgtatgcaa aattgtccaa 120 atgtgagttt gggttgacag aratgctcta tttagggcat gtgatatgag atcagggagt 180 tcaggtgcac tgggataaga tccaagcgat tcgtgattgg cctccaccga ggaacactac 240 agaggttaag agcttcatgg ggttatgcac ttactaccgg aggtatgtga agggtttttc 300 tcagttgata gccccactga cagatttgac caagaaggga gcctttgaat ggacggatga 360 ggcacatgaa gtttttgaca gaatgaagga catcatgagt tcgtgcttgt tcttagcttt 420 tccggacttt gcccaaccct tcgtgttgga gtgtgatgca tcaggagtag gtattggagc 480 tgtacttatg cagggggaat catcccatag cttttgagag ttggaagctt agagattacg 540 aaaagcttta ctctatctac gataaggaga tgttggccat catgcatgca ttgtccaaat 600 tcaggcacta tctcgtgggc aca 623 // ID Copia-11_PIT-LTR repbase; DNA; PLN; 188 BP. XX AC AATU01000106; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PIT_; KW Copia-11_PIT-I; Copia-11_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-188 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000106; Positions 17117 16930. XX SQ Sequence 188 BP; 50 A; 44 C; 52 G; 42 T; 0 other; tgttagaatt gtgcatgagg ttacaccggt gtaaccgcgg tcccgtaacc gggttcggcc 60 gccactcctg cggatggtga agaacactgt tggaagcgcg agagcgcagg taagaaggtt 120 agataaagag cctcacttct caatatacgg tgtccttcca cagatcaaac taataggtta 180 tgagccca 188 // ID Copia-22_PIT-LTR repbase; DNA; PLN; 446 BP. XX AC AATU01003127; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-22_PIT_; KW Copia-22_PIT-I; Copia-22_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-446 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003127; Positions 55119 55564. XX SQ Sequence 446 BP; 96 A; 141 C; 112 G; 97 T; 0 other; tgtgacgtac cagcgtgtac cagtgccaga ctgccaagcg agcagtgctg gcaccgacgt 60 gtagcagcgg ccacacggtc gcgtacgcga ttgtactcca tattcctcct gcgatggtga 120 gaggcgcagc ctctcatggc ggttgcaacc gccctagtcc tcagcaccag cacctgcagc 180 tatataagac aacaagagtg gttagcaact gctcactaaa taaagcatgg gtcccaaggt 240 tgaggagcgg gctgcggcgc agctatgctt tcacttccaa tcgtaccagc gagtactcaa 300 gctcctcacc ttggttgttc ccgccgcggc attctgccag gcaactcccg ccttccacct 360 cgtctatctt gctcttcctt taagtatacg tgctgctgga gcctacgtca cgctgacggt 420 aactacaagg cacacagcac gtctca 446 // ID Copia-15_PSo-I repbase; DNA; PLN; 3973 BP. XX AC AAQY01000592; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-15_PSo_; KW Copia-15_PSo-LTR; Copia-15_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3973 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000592; Positions 93307 97279. XX CC Positions [1310-1786] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1220..3301 FT /product="Copia-15_PSo-I_2p" FT /translation="MADGVPRIVGDVSTDNVCAGCCMGKVRADDFPRHPDN FT LGKSTGVLDLVHTDVMGPMQTKTPGGCTYAVTFIDDYSRHVTVYFMKVKSE FT VLSKFKIFKAAMENATGKLFKAYLDRSAIKHEKTVPYTPQQNGLAERMNRS FT LVEMARCMLYHEGIDKKWWAESVNTAAWIMNRIPNSVTVKTPHEIVHRAKP FT QLKNMKVFGAIGYAHIADEKRRKLDAKAFKCRFLGYEDGVKGYRVLNAATG FT KVQIVRTVKFMEEPDHLMTRLEIDDDEDSTPAAPSSGGVPALVPVRDVSTE FT VEVGVPTMSPNDVTTAGAIVPYTTHPMITRSRARHIEETNDPEEPGARKKQ FT IVAPSEIRTKRQKVDQGRAKSDDTQLAIHGGMLMAATEEVPRSYQEAITSE FT DRAQWKVAIASELKSLMTNKTWKLVSKPKHQRAIGCRWVFALKRDETGRVV FT WYKARLVAKGYSQRHGIDYDETYSPVVYLNSIRAKLAKCCADGMEIDQCDI FT DTAFLYGKLEEEIFMVLPEGLRELLDLAEAQGEDDVVCLLLQSLYGLKQAS FT RVWNGTIDAHLKSIGFRDADADPCVYTRGAGDDECIVCLYVDDMLIASRQR FT TIIDSVKAGIADKFRIKDLGRARFILGIEIDYDMEAKTLGICQRAYTASII FT KKFGQKNAKPCLTPLDPSVQLTKADEHQTEEDKAKMKSNPYRSLV" XX SQ Sequence 3973 BP; 961 A; 990 C; 1241 G; 781 T; 0 other; taatctcaag tggttatgag cccaagctac gcagacaccg tgaagctcgt ggaagacgac 60 tacttccact ggaagtttaa catgcggatg aagctgtcgc gcaagggact gctggcccac 120 atcgtcaagc cagagttcga ccagctgagt gaccgctcca cggtacaaag gaagactgac 180 gatctgaagg cccttggtgt gatcgctggg gacgtgagtc tcacatacca agtctacatc 240 cgtggagcga caaccgctgc tgaatcgtgg cgcctgcttg aggagcagtt caaccgaaac 300 actctcaaga atcggctcgt cgtgaccaag aagttgcaca acttcaagat ggagcccggg 360 acgcggttcg cggcacatgt ggaccggttc aaggagctgg tgctgtagat ggagacgatt 420 ggtgaagcta tggacgagac tcgccaactc gtgctgctgc tgggcagttt gacggacgag 480 taccggatga tcagcaccgt actcgagaac acgccgaaca tgacgttggc gtacgcgatc 540 caagctctgt ctggtgttga agtctcggag gattcgacat cggctcggga gaaggcattc 600 gcaacgaaga aggagttccg caagcgcggg ttctccggga agtgcttcta ctgcaagaag 660 ctcgggcaca aggagcaaga gtgccgcaag aagaaggctg atgagggacg tggacaagtc 720 gcgctggagg cgtcggactt cgcgttcacg gctacgggtg caatggcgaa gtcggagtgg 780 cttgtggact ccggtgccag ttcgcacatg accagcgtcc gggacaagtt cgtgtccatg 840 aaggagctga agacgctagt ccgcatcacg atcgcggatg gcacgaagat cgacgcagtt 900 gcaaagggca ccgtcagatt ggagctgatg gacgggacgc ccgtcacatt gtcggatgtt 960 ctgtacatcc cggaagttga tgggagcctc atttcggtgt cgaagctggc cgagaaggac 1020 gtcgacgcgc aattcagcaa ggacaagtgt gtcttttgct ttggtggtgt gacggtgatg 1080 gaggccaagc gctatggaaa tgtttacaag ctgaagacag tgggggacga gatgtgtcgt 1140 gcggcgacga tatctcgtaa ggagccatgg gccgtcgtgc acgcccgtct cgtacaagcg 1200 ctacgaacag ctgttgagca tggccgatgg ggtaccgcgc atcgtaggcg acgtgtcgac 1260 ggataacgtg tgcgctggat gttgcatggg gaaggtgcgc gctgacgact tcccacgtca 1320 ccctgacaac ttgggtaaga gtacaggtgt actcgacttg gtgcacacgg acgtcatggg 1380 tccaatgcag accaagacac ctggaggctg cacatacgca gtgaccttca tcgacgacta 1440 ctcgagacac gtgacggtgt acttcatgaa ggtgaaatcg gaggtgctgt cgaagttcaa 1500 gatcttcaag gcagcaatgg agaacgcaac gggcaagcta tttaaggcct acctcgaccg 1560 aagcgccatc aaacatgaga agacggttcc gtacacgcct cagcagaatg gactggctga 1620 gcgcatgaac cgaagcttgg tggagatggc gcgctgcatg ctctaccatg aaggaatcga 1680 caagaagtgg tgggcagaat ctgtcaacac ggcggcctgg atcatgaacc ggatcccgaa 1740 ttcggtgacc gtcaagacac cccacgagat tgtgcatcgt gccaagcctc aactcaagaa 1800 catgaaggtg tttggtgcaa tcggctacgc ccacatcgcc gatgaaaagc gtcggaagct 1860 ggatgcaaag gcgttcaagt gtcgattcct gggctacgag gatggtgtga agggataccg 1920 cgttctcaac gcggcgacgg gaaaggtgca aatcgtgcgc actgtgaagt tcatggagga 1980 acccgatcac ctgatgacgc gcctggagat tgacgacgat gaagattcga ctccagcggc 2040 accaagctcg ggcggcgtac ctgcactggt gcctgttcgc gacgtttcga ctgaagttga 2100 agttggcgtc ccgactatgt cgccgaatga cgtgacgaca gctggagcaa tcgttccgta 2160 cactacccat ccgatgatta ctcggtcgcg tgctcgtcac attgaagaga ccaacgatcc 2220 tgaggagccc ggagctcgca agaaacaaat cgttgcgcca tccgagatca ggacgaagcg 2280 tcagaaggtg gaccaaggtc gtgccaagtc ggacgacacc cagctagcca tccacggcgg 2340 aatgctgatg gctgcaacgg aagaggtgcc aaggtcgtac caagaggcga ttacgagtga 2400 ggatcgtgcc caatggaagg tagcgatcgc tagtgaactc aagtcgctga tgacgaacaa 2460 gacatggaag ttggtgtcca agcccaaaca ccagcgcgcg attggctgcc gctgggtgtt 2520 cgcgttgaag cgcgatgaga cagggagagt cgtttggtac aaggctcgtc tcgttgccaa 2580 ggggtactca cagcgacatg gaatcgacta cgacgagacc tactcgccgg tggtgtacct 2640 gaactccatc cgtgcgaaac tcgcgaagtg ctgcgccgac ggaatggaga ttgatcaatg 2700 tgacatcgac accgcgtttt tgtatggaaa gctcgaagag gagatcttca tggtgttgcc 2760 tgaaggactt cgagaactac tagatttggc agaagctcaa ggtgaagatg acgtcgtctg 2820 cctgctactg cagagtttgt atggactcaa gcaagcgtct cgcgtatgga acgggacgat 2880 cgacgcgcat ctcaagagca taggatttcg agatgccgat gccgatccgt gtgtctacac 2940 gagaggagct ggtgacgacg agtgcattgt gtgtctctac gtcgacgaca tgctgattgc 3000 atcccgccag cggactatca ttgactcggt gaaggcaggc atcgcggaca agtttcgcat 3060 caaggacctc ggacgcgctc gattcatcct tggcatcgag atcgactacg acatggaggc 3120 caagacgctg ggcatctgcc agcgggcgta caccgcgtcg atcatcaaga agttcggcca 3180 gaagaatgcg aagccgtgtc tgactccact cgacccaagc gtgcagttga ccaaggcgga 3240 cgaacaccaa accgaggagg acaaggccaa gatgaagtcg aacccgtatc gctctctcgt 3300 gtgaagtctg atgtacctgg cgtgtggaac ccgaccggac acttcagctg cagtggccaa 3360 gctgagccgt tttctggaga acccggtgag aagcactggg atgctggtat ccgtgtggta 3420 cggtacctgt tgaagaccaa gaatctcggg atcgtttacg atggattgct tggcacggag 3480 ctcgtcgcgt attcggacgc cgactgggct ggcaaccgcg acgacagacg ctctgtaagc 3540 ggaatcatgc tgatgatgtg tggtgctccc gtggtttggc gatcgacttt tcagaagacg 3600 gtcgcgctga gctcgacgga ggcggagtac atggcactca gcgaatgtat gaaggaggtg 3660 gtgtggatgc gacagctgct caaggatttg ggtgcggagc aagatggacc tacggtgatc 3720 tacgaggaca accaaggtgc catggcgttg gctaagaatg tcggctacca ggctcgcacc 3780 aagcacatcg acatccgcta tcacttcatc cgcgagaaga tcacgagtgg tgttgtggag 3840 ctcgactacg ttgagtccaa gaaccaactc gctgatttcc tgaccaaggg actctcaacg 3900 aagactcttc gctatctgct cgagcgcagt aacatcactg agatgctcgg gtagactgcg 3960 aattgagtgg gag 3973 // ID Sola3-1_EmiHux repbase; DNA; PLN; 6226 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Sola3-1_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 6226 BP; 1126 A; 2053 C; 2105 G; 941 T; 1 other; gggcgacttc acaccagcct ggcgcggtct acgtaacaac tgattgaacc ctcccgcacc 60 cactccccat accgacacca tgtctgggga tggggaaccg acgcgcggga gggatcattt 120 tcctttttgg ggttcttttt tctctttctt ggcggctctt ccgcgccagg ctgaagcgct 180 ccatagcctc tcctcgcaac gaccacacag ctcgccatgc cgacccgcag cgccgctcgt 240 gcgacggaca cgtgagcagc acccaccgcg cccgtccctg cgacgcgcgg ccgcacagca 300 gcctttcgca gccgcccgtc tctctacgct cgccgaacgg ctggccctgc ctttgctact 360 ctcaggatca ctcctctcga gatggtgagc gtcctcgctg atcccacggc gtttggctac 420 gtggaatgtg tctggtatgc gctcgagccg ctgccgagca acccacagca ctcgttctgc 480 gaccgctttg ggctgagcat gaccgagctc gacaccttgc ttactcatac cgatccgccc 540 ttcttctctg gcgcattgaa ggagctcaag tcgctgcgcg aaagctcctt caatgcgagc 600 atcgtagcgg tgtgcggacc aacggcacct ccagtcttca agcagacggc tcgcagcact 660 gcggcgctcg agcgcgctgc cggcgctgtc ggcggcgtct cgtgcgcaaa ccgctagatg 720 cgaccacaca ccacgctcac gacatgtcat tcgcacctcc cgcgttgcta tacctcagaa 780 caccgctctg gcccgcggtt gtcacagtct gcacccacac agcgacgtgc ggctctgcac 840 gcgccgcagg tgggtggcct ttgggcggca gccggacgtc accccgcagc agcaggtcga 900 cggccacgcg gactctgttc aacccggcgc agagtcctcg ctcgactcgt cgaggcccgg 960 cccgcccacg aggcgacacg cgggcctctc gcagtcgacg atgcagcagc agcagcgaca 1020 cctgggaccg aaggagacga tgaggacgag tcagcgctct gctcgctcct agacatagcc 1080 gccgctctcg agaaagctgg cgtcgccgtc gacttcaagg gcatgaccaa caagcgactt 1140 ggctccgtca ttcgcctacc gctaggcggc gcctcgggct cgacgcagcg ggcaactctg 1200 agggagggag gagcggccat agtgcgaggc attgcttcga gcctcaaccc ggatggctcg 1260 ggaacggcgt ccctgatcgc cgccgcgctg gtcccgccgc cacctctcga gacgaggcaa 1320 cgtgtggctg ccgaccgcgc cgttaccgag agcctggtga ggtcgtacct cgacgccgtg 1380 aagaggaaac tgccaaagcg cgagcagcgc cagcgcctgt cggctctcgt gcccactatc 1440 ggtcagcatg gctacacgct gcccatgctc aagcgcgagc taaacatcaa catctcaagg 1500 tgcgccgccc gtgcgcgcct atgctagctc tcggtgccct ggggagacaa aaagaacccc 1560 ctgtcggtgg agagagcgcg gtgacggcgc ccatgcttcg caccccgcgc cctccgcagg 1620 ttcgagtacc gcgcgacccg cctgcacgcg ctgacctttg gccccgcggc gtcggcagaa 1680 gacgatcggc cgaagcctca gggcctgaag agcgcaccgc ttaaggatgc catcgccttt 1740 ctctactcgc ctgataatat gcagcaggtc gcgtttggga cgatgccgat ccggctcagc 1800 aacggagatg caatggaagt gcctgcaacc atgcggacga aagcacgtga gcagatctac 1860 atggactacg ccgaagccag gcgcaatccg cgtggaaaga cgtggttcgg accaaagcat 1920 aagcaaggat ccttccggta cgatgggctc ggtcggacta agtttctaga ggcggccgtg 1980 ctagcagcca agggcgacct gaaacagctc ggagcgctcg acgccgtctc ggagttttgc 2040 ggccgtatgc agttcgaagt cctccgtaaa atcgtccgtg agctagctgc gctctgcccc 2100 agcgattgca gctcgttcga gaagcctatc ttggatcgca tcgacgcggt ggaggtgcac 2160 gtaaagcgcc agctgaaagc gcacctcggt catgcagatg cggccaagtg cgcgtggcac 2220 tgtgcaaacc acgcgcacgc tgacgcctct ggggcggata aatcgcgccc ggcgccctgc 2280 acgcacgtgc acgcacaggg ctgcatggag tgtgctcagc tcgcggcgct gcaagccgat 2340 ctcgacgtcc tcctgactgc cgccgagcgc tgcctgcagc gaaacctccc tagcccggcg 2400 gcggctgctt ccctagccgt cggctcgtac gtcgcctaca cggacgaagc cggcctcacg 2460 cactcaacgg tggtccggga ggtgcacccg cccgagggcg gcgcctttcc ccctcctcct 2520 gctgccccgg ccgtcacccc tgcggctgga cgcacgcggg cctgcgcggc tgcagcgcct 2580 gccacacccg ccgccgctgc tccagcggcc gcaaaccagc ccgtggcggc cacgaccgcc 2640 gttgatccga actactacac ggtcgacagc ggcttcgagg gcgggaggcg gcgagtcccc 2700 gcctcggctc tctccccccg agtctccgag ccacgtctag aatcgctgac ccaactgcga 2760 gagctcgtgc gccgcgctag cgaaaagctc gacagctact accatcacat ggtccgagca 2820 gcgcacgagg ctgctactac ctcgcgtctg ctcgaagagc tcgagcagga tcaggcgcgg 2880 gcagcccacc tgcgagacac acggagaaag ggaggtgagg agagtcgccc acgcgaaccc 2940 gagagaagag tgcgtccgac ctctacaggt cctcgtcatc gccgactgga aaatgaagtt 3000 cttgatgagc gtcttccgcg aggccatgtc cgagttcttc ggcaagcgcg gcatgccttg 3060 gcacggctgc atgcttgtcc ggcgcccgct gcgcttcgag gccgatcggt acggcgaggg 3120 agagttcgtc tgcgagtaca aacatgcaat gatgctcgcg tcgaaagagg acggctttgc 3180 taccctatcc gcagtgcaca tcgcgctctc cgagtacaaa tctgagaacc cgcacgtctc 3240 gagcgccttg gtcaagactg acggagccgc cgcatacgcg ggcgcgacct tcaccctcgg 3300 cctctccttc ctgggtgaga cgaccggcat cgtcgtccgc ggacacttca tcggcgaagc 3360 tgggcagaat aagtctactc tcgacggcga gtttgcggtc agcgggagcc aggtccgccg 3420 gctcatctgc agcggcctcc acgacgtccg cacgccgtca gacctattcc acgggttaga 3480 gaaggtgctc tccaagcagg gcggccgcac agtcgcgctc ttccggcccg ccggcagcga 3540 ggagttcgcc gtggagacga tcgctcgcct caccctgatg tcggcccgcg agtacgtcta 3600 cgacgggtcg gggtcgttcg aggcgctgct gctccgccgc cagtcctttc tggggcaggg 3660 ggagcggctg acctcggccg acctcttccc ggacggaagg gtcgcgccca ccgcgcctca 3720 ggtcgtcgcc tcgacgagcc gcggggcggc gggcagctcg gggcagcacg agctcgtcgc 3780 acgaagcgac gacaggggcc gcgagggcaa agcggaccgg aagctcgtcg cacgaagcga 3840 caggggccgc gaggcgcggg cgaaggccaa ggcggagcgg aaggaggcgg cacaggcgaa 3900 ggtggcggcg gagcgccgcc gtctcgcttc ggaggcctcg gtggcgcgat cgacagcgcg 3960 gtcctaccga tgctgcgaca tgcctggcgg catgcccggc tgcgatcgag tctttgtgcg 4020 cctagaggcg ttaaagaggc acctggagca gggtcgcacc gacccggatg tgcaccagtg 4080 cggttatgtc cgatgctacc ccgccggcgc gcctgtcggc agggcgagcg ccggcgacgt 4140 gcttgcgcga gcggttgccg cacaggcagg gcgtgtcacc atccacggcg gcgagggcgg 4200 cctcgcctcg cccaccctct gcccggtggc cgagctgcag ctgacgctgt gcgatgggac 4260 cgtgtgcaag ccgacccctc cggaggctgg ctatgccagt aaccagcagg ggcggtcgaa 4320 gccgcgccgc aagtccgcca tgcagctgac ctacgtccta ctcgtcggcc acgacgtgaa 4380 ggacgagaag gggtacgaga acctgcacgg gcacgaggcg agccagctca tgctggagtg 4440 gggcacggcc ggctttgcca gccgttttgc gggggttggc aatgcgccgg ccacgcaaga 4500 cgggcagccg cacctgccgc ggacggcgca actctcggcg agcgagctca cgccgctgct 4560 tatgctgccc cgggcgaagc tcgaggctcg catcctcaag ctgaaggcaa aggagcggcg 4620 cccctgggtc gccgcaaaga cgaggaagcg gaagcgcagc gccgtccctg ccggccgcaa 4680 gcagaagccc gacagcgcgg ccatcctgcg ctcggcgcgc gtcaagcttc ggcgcgcggg 4740 ctgggacatc gccgccgcag tcgggcagag gggcgggcgg cgggcggacc gcctcaccgt 4800 cccggagctg aaggctctcg tggcaggccg cggctggaag ctggggaagg gtgagaaggc 4860 caaccaaggc cccctgcttg cgctcgccga gcggaaacgc aaagaggcgc gcgacgcgca 4920 cgctggccgc cacggcggcg tcgcccggcc tgaggacggc ctggacgagt gctgggcgcc 4980 tcagcccgag gatgaggtgt cagacgacgg cgcgggcggc tcggaggcga gcggctcggg 5040 cgccgccggc gctgcaggcg gtgcgggcgg tgcgggcggt gcgggcgcgg ggggcgtagc 5100 aggcgcgagg gcggaggccg gcacggctgg ggagccggcg ggcgacggct cggcgtcgga 5160 gggagaggct acaggtgatg tcgaaatggg tgaggcatgc ggggacgccg agatggcaga 5220 ggcagggtcg gggagcggcg gcggcggcgg tggcgacggc agcgacggca gcagcagcag 5280 tagcagcagc agcagcgacg atgacagcga cgacgccgac ggacctgaca gcaactgtga 5340 gggagaggga gaggatgtag cgtcgtccga gtctgagagt gagtctgggg atgagggtga 5400 ggagtagccg cgcggtggag tgtacgctcg ctgtttactc gatccgcgcg tgtgtcgaca 5460 agggagaaaa cggccacgag aagaggaggg cacgcgtgac acctgagcga gcccgccaca 5520 gctggctctt tcacctgcaa gtacgaagta gcagacgctg aggcgcgcag gaagtggccg 5580 acacggcaag gtcagcgcgc atttgcgcca cgcatcgcga gatggaggga gtactgcaac 5640 ctacagagag aggacctgca gcagctgcca gacgcgacga ttcgcacgaa ggagtgactc 5700 gcccgcggct tgccgcactg cactcgcagg tatgccctcc gggcggaggt tgagcactag 5760 ccgcaaggca cacgacctga ccgcggccag tgctcaacct gcagcaccgg gcctacagcg 5820 aggagtgata cggtgattga cgaggcagtg gttcatgcgg tggtggaatc ggtgtcaaaa 5880 ccgagccaac aggctgaaac ggcacgggag ctcacagtgt gcctcactga gagtctcgcg 5940 ggtgctccga ggcgagcaga gcgcgagggc cgatggcatg tgagtctacg tagacgcctc 6000 atacttggcg gggctagtgc cggacgcaga tggacgacga ccgagtcgac ggccctgcca 6060 agcgttcgga atacccccaa aaatcaagaa aaaattctgc ggccgaaatc tcgattttta 6120 agctctctgg gggtgtttct gggaccatat gcgaccactt cacccgcccc gggaggactg 6180 gatcagttgc gacctatctt gcaccatcct ggtgtgaagt cgcccx 6226 // ID Gypsy6-I_VC repbase; DNA; PLN; 4930 BP. XX AC scaffold_80; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6-VC; KW Gypsy6-LTR_VC; Gypsy6-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4930 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 115-115 (2008). XX DR Genome; scaffold_80; Positions 249030 253959. XX CC Positions [3723-4205] - Integrase core CC 'TGGTG' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 843..4853 FT /product="Gypsy6-I_VC_1p" FT /translation="MRASRALLPSVLAQVERAIGRKLTFDARSAKSDGDAL FT CNPLVPRSQSLSANDLRGHTVLFLPSSISELQAQLTAYHICKRQHLETAAC FT IITPTHTTHCASALLAGMQRVLQFSPRTPLFNGLDLEGRPVPFPGSMSAFD FT VWYDPPRPAVALRDTSPRLSTFLLSPQSAALPGAKVPLIQVRVVSDTLLAL FT ADSGASDDFISLSEVKRLGLTPSACSWSHVTLANGDKQAILGRVTLRLSVG FT PLRLSVQPYVLPELPAPATYILGSSTFSRYGGVLSFESCTLRLRKGTLVYK FT APFIAVERDPSEQGTSQSEPQVHYAVAALCQHTTPQPIGRKAAVRLIRKGA FT HGLLVRPKLQLNAAVTATDPSDPELQSLLNEFSDVFQEIPGIPPVRPVDHT FT IPLTPGATPVTRPMYRLSPLELDEVKRQVTDLLKKGMIRPSTSPYSAPILF FT VGKKDGSLRMCIDYRGLNATTVKNRYPLPRIDDLLDKLRGSAFYSSIDLQQ FT GYNQIRISESDIPKTAFRTPFGHFEYTVISFGLTNAPATFQAVMDRIFRPY FT LDKFLIVYLDDILVFSKTREEHLQHLRSVLQVLRQEKFYAKLSKCHWAQPQ FT VEYLGHIVSADGVRMDPRKTATVRDWPAPTSLQELRKFLGLTNYFRKFIAR FT YSVIAAPLTNLTRKGAFSSPAAWTADCQQAFDALKRAVADDLILRFPDYSL FT PFRVEVVTDASLYGSGAVLLQQGRPVAFTSRKFSGAETRYTTGEQELLAVL FT HALKEWRCYLEGRPFTLKTDHKPLTFLQGVPSLNRRQARWMEYFARFNFDW FT EYLSGSLNVADALSRHPSLHSAILSVTTRRTASLERSVSASDLSARIKTAI FT TTDPWFTDTNNTGHLLFQDGLWLRREGSYRQIVVPNDDSLRRELLSRFHDG FT PLAGHPGCTRMVEILRRSFWWPRMAKDAENYVLSCDSCQRNKSISGKPHGL FT LQPLPVPAAPWESVSMDFVVALPKTEGGYDAVLVLVDRLTKMVHLAPTTSA FT CTAEHTARLFFDNVVRLHGVPKSVVSDRGSQFTSKFWDALGKLVGMRINLS FT TAYHPQSDGQTERTNRTLGDMLRNFAGRTPSVWDTCLTAAEFAINNAVNRS FT TGQSPFFLNYGYNPVLPVLRELDVNVPAAKTFAKSFVSRLTEAKACLDSAQ FT QRAADYYNKSKRDVTFTKGQLVMLSTKNLRSLAEGSRKLLPRWVGPYPVVR FT MVGSVAVQLELPPEMRVHPTFHVSLVRPYRGSVPIPEAPAPPAAIEAAPTT FT WLSGRQTMYAVERILDYRTRRVGKARRKRTVHEYLVKWAGYSSEHNSWEPA FT RNFTPDLKPLLDAARLRAQSQVVSR" XX SQ Sequence 4930 BP; 915 A; 1414 C; 1342 G; 1259 T; 0 other; aatctggtat cgagacgggg tccttacgga ccagtctcat ctccgcttcc gcactctttc 60 tttcatttgg cactagtatg aactacccta gtgaagaggc tacatcggct gattcggaag 120 atttcggccc cttggcgact tttgctgctg acctcggcaa tgcggtgatg gctgccgccg 180 catccgcggg ccctcttgtt gtagcgggtt ctgctattcc tacctctgct acgatccctc 240 gcttgcgcga gcttgtgcac ctctcccgtg gtgcattgca agcaatcgag gcggtccatc 300 gctgtgctga ggaagtctta cttttcgcct cctccgcgca cggtgctggc ggcgcagaaa 360 gggctcctac ggctgctgct ttcttaccag agcaggacgt cgaggccccg gagctggacc 420 cggttggcgc ccctgctgag gcgccggcac ccgatcctcg cgctgctgtc gctgtcgggg 480 gtcctgagcg cagagagggt ggcacagttg ccgccccggg tgccggtaag ccgagggggg 540 gtccccggga acagcgccgg tggcagcaaa agggtcctag aagtaatcag ggtccttccg 600 aggccgggcc tagtcagccg atgggacaga aacgcaaacg tgacgacgat cagtggctag 660 agaagtattg ctgcactaag gcagagctgg aggagcgcag gaagaggaat aagtgcatga 720 gttgtgggga tggccattcg acgggggttt gcccgttgtg gcccaagaag aagtaggggg 780 ttgcccaggc cgctgaggag gggactcctc ctgggttaga agtagagacc gagctgcctg 840 ccatgcgggc ttccagggca ctgctgccct ctgtgttagc gcaggttgag cgagctattg 900 gacggaagct gacgtttgat gctcgttctg cgaagagtga cggggatgct ttgtgtaacc 960 cgcttgtgcc gcgttcccag tctctctctg ctaacgacct gcgtgggcat acggttctct 1020 tcctcccctc ttctatttca gagttgcagg cgcagctgac tgcgtaccac atctgcaaac 1080 gtcagcacct ggaaactgca gcgtgcatca ttacacctac tcacaccaca cactgtgctt 1140 cggctctgct ggccgggatg cagcgcgttc tgcagtttag tccaaggaca ccgctgttta 1200 acggactcga tctggagggt cggcctgtgc cgtttcccgg gtcaatgtct gccttcgacg 1260 tttggtatga tcccccgcga cccgctgttg ctttgcgtga cacttcacct cgtctttcga 1320 ccttcctgct ctctcctcag tctgctgctc tgccaggtgc aaaggtgcct cttatccaag 1380 tccgcgtcgt cagcgatact ctactcgcgc ttgctgattc tggcgccagc gacgacttta 1440 tctctctctc tgaggtgaag cggcttgggt tgacgcctag tgcctgttcc tggtcgcatg 1500 tcacgctcgc gaatggggat aagcaggcta tcttaggtcg ggttacattg cgtctttcgg 1560 taggaccttt gcgtttgtcg gtgcagccgt acgtgttgcc tgagttgcct gcaccggcca 1620 cgtacatctt agggtcctct acgttctcgc ggtacggggg cgtccttagt ttcgagtcgt 1680 gcaccctgcg gttgcgaaaa gggactctcg tttataaggc gcctttcatt gccgtggagc 1740 gcgatccttc cgaacagggt acctcgcagt cggaaccgca agttcattac gccgtagccg 1800 cgctctgcca gcacaccact cctcaaccca taggtcgaaa agctgcagtt cgacttattc 1860 gcaaaggcgc gcatggtctg ttagttcggc ctaaactgca actgaacgct gccgttaccg 1920 ctactgaccc gtcggaccct gagctgcaat ccctgttgaa cgagttttcc gacgtttttc 1980 aggaaattcc agggattcct cctgttcggc cagtcgacca cacgattcct ctgactcctg 2040 gcgcgactcc ggtgactcgt ccgatgtacc gcctgagccc tctggaactc gacgaagtca 2100 agcgccaggt taccgacttg ctgaaaaagg gtatgatccg ccctagcact tctccctatt 2160 ctgcgccgat cctgtttgtc ggtaagaaag acggtagtct acgcatgtgc attgattacc 2220 gggggttgaa cgctacgacg gttaagaatc gttaccctct cccgcgtatt gacgacctgc 2280 ttgacaagct gcgcggttca gccttctata gctcgattga cctccagcag gggtacaacc 2340 agattcgcat ttccgagtcc gatattccta aaaccgcgtt tcgcaccccg ttcggccact 2400 ttgagtacac ggtcattagt ttcggcttga ccaatgctcc tgctaccttc caagccgtta 2460 tggatcgtat ctttcggccg tatcttgaca aattcctaat cgtctacctg gatgacattc 2520 tggtattttc caaaacgcgc gaggagcacc tgcagcactt gcgctctgtc ctccaggtac 2580 tacggcaaga aaagttttac gccaagctct ctaagtgcca ttgggcgcaa ccccaggtgg 2640 agtacctcgg ccacatcgtc tctgccgacg gtgttcggat ggatccccgt aaaactgcca 2700 ctgtacggga ttggccagcg cccacctctc tgcaggagct tcgtaagttc ctggggttga 2760 cgaactactt tcgtaagttt attgcgcgtt attccgtgat agctgcaccg ctaaccaacc 2820 tgactcgtaa gggtgcgttt tcgtcgccag ccgcgtggac agctgattgc cagcaggcct 2880 tcgatgcgtt aaaacgtgcg gtcgccgacg accttatcct ccgttttccc gattactcgt 2940 tgccgttccg tgtcgaggta gtgactgacg cttctcttta cggatccggt gctgttctgt 3000 tgcagcaagg ccgccccgtg gcttttacga gtaggaagtt ttcgggcgct gaaacccgtt 3060 acaccaccgg ggaacaggaa ttacttgccg ttttacacgc tttaaaagaa tggcgctgct 3120 acctggaagg ccggcccttt acgctgaaaa ctgaccataa gccccttacg tttctccaag 3180 gtgtgccttc gttaaaccgt cggcaggcta gatggatgga atacttcgcg cggtttaatt 3240 tcgactggga gtatctgtct ggttccttga atgtggctga cgctcttagt cgacatcctt 3300 cgctgcattc cgcaatcttg tccgtcacaa ctcgtcgcac tgcctccttg gaacggtcgg 3360 tttcggcctc cgacctgtct gcgcgtatta agactgctat taccacggac ccttggttta 3420 ctgacactaa taatacgggt cacctccttt ttcaagatgg tctttggctc cgcagggaag 3480 gctcttatcg tcaaattgtc gtccctaatg acgactccct gcgtcgtgag ttgctttccc 3540 gtttccacga cggtccgtta gcggggcacc ctggctgcac acggatggtc gaaattcttc 3600 ggcgttcctt ttggtggcca cggatggcta aggatgccga gaattacgtc ctctcctgtg 3660 attcttgcca gcgtaacaag tctatctctg gtaagcccca cggactgtta cagcctttgc 3720 ctgtccctgc ggccccttgg gagagtgttt ccatggactt cgtcgttgcg ttgcctaaaa 3780 ctgagggggg ttatgacgcg gtgttggttc tggtcgaccg tctgacgaaa atggttcacc 3840 ttgcacccac cacgtcggcc tgcaccgcag agcacactgc ccgtttattt tttgataacg 3900 ttgtgcgttt gcatggtgtt cccaagtccg tcgtttcgga ccgtggtagt caattcacta 3960 gcaaattttg ggacgcactg gggaagttgg taggtatgcg cataaacctt tccactgcct 4020 accaccccca gtccgatggc caaactgagc gaactaaccg gacgttaggt gatatgttac 4080 gtaacttcgc gggtcgaact ccctctgtct gggatacctg cttgacggct gccgagttcg 4140 caatcaataa tgccgttaac cgttcgactg gtcaaagtcc ttttttcctt aattacggtt 4200 acaatcctgt tctgcctgtt ttgcgcgaac ttgacgtaaa cgtgcccgcg gctaagactt 4260 ttgctaagtc gtttgtgtcc cgactaacag aggctaaggc ctgccttgac tcagcccaac 4320 agcgcgcagc ggactactac aataagtcca aacgggacgt caccttcacc aagggccaac 4380 tggtcatgct aagcaccaag aacctgcgtt ctctggccga aggttcccgt aagctgttgc 4440 ctcgctgggt tgggccttac cctgttgtgc gcatggtggg ttcggttgct gtacaacttg 4500 aactccctcc tgaaatgcgc gtccacccta cttttcacgt gtccttagta cgtccatatc 4560 gtgggtctgt acccatccct gaagcgcctg cgcctcctgc tgctatagag gccgcgccta 4620 ctacttggtt gtccggtagg caaaccatgt atgcagtgga acgaattttg gactatcgaa 4680 ctcgacgcgt gggtaaggct aggcgcaagc gcactgtgca cgagtactta gtcaaatggg 4740 ctgggtactc gtccgagcac aacagctggg aaccggcgcg taacttcact cctgacctca 4800 aaccattgct cgatgcggct cgtcttaggg cgcagtccca ggtggtatcg cgttagctag 4860 ttttactaat cttgctttgc atagcgattc gtgtgcgacg gggacgccgc acttaggggg 4920 ggggaatagt 4930 // ID Copia-1_ES-LTR repbase; DNA; PLN; 341 BP. XX AC CABU01000050; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_ES_; KW Copia-1_ES-I; Copia-1_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-341 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000050; Positions 4932 5272. XX SQ Sequence 341 BP; 92 A; 80 C; 86 G; 83 T; 0 other; tgggagtact cgtagcatag tatgacggtt gagatgtccg gtacgtacgt acgaaagtaa 60 cagtgatgag atgcggaggg ataggaactt tctacatata ttccttggtt gcgagaggta 120 tttggtggag attcagagag attcgttgag tgacaaagag tgaaggcgtg cccagatacc 180 gtgaaggttt gacgagcact ggcacgcccc cgatgaacgc aatactttcc aatacttttg 240 ctttacgttt tcaacacgtt tcctacccat acacgctccg ccatgagcca cccgctttga 300 gctccaacca caaagaaccg agccacccga attatcgatc a 341 // ID Gypsy-2_PIT-LTR repbase; DNA; PLN; 485 BP. XX AC AATU01002362; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PIT_; KW Gypsy-2_PIT-I; Gypsy-2_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-485 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002362; Positions 67188 66704. XX SQ Sequence 485 BP; 102 A; 125 C; 124 G; 134 T; 0 other; tgtaatggat tccgggtttt ccagcttgga ttcaccgcag tggaacttcg agctggttga 60 cagacatcca gatctggtgc tgagcggcgg gctcagtaac cgagagatgt cgaccgtgaa 120 gatcacagaa gtacccgcat gtgtccgacg gcattcctct gtggacaatg ggtacagctc 180 tgtgatcttg gtgagcaagt tgccttacca agatgtatta ggatttagta agcccaactg 240 catgtttcct ttggtgcgtt gcatgtacat tctcagcagt ctgtctacga cagtctgcct 300 ctctcttttt gggtttacct tggcgagcac gggctggtta gcaccagact cacggtctcc 360 caaggcactc actttccaat cttccaagtc accaacacat caatacattc ggctactatt 420 tcgtgcgggt tggcccccgc atcgctgtgt tggagttttg gtattcggac ccgggaaaca 480 ctaca 485 // ID Copia-34_PIT-LTR repbase; DNA; PLN; 248 BP. XX AC AATU01001040; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-34_PIT_; KW Copia-34_PIT-I; Copia-34_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-248 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001040; Positions 33550 33303. XX SQ Sequence 248 BP; 75 A; 55 C; 61 G; 57 T; 0 other; tgttgtgccg caatatcatt cagtttgtat gcagagaaat gaagtaaaat gataggtcaa 60 taatggtgta gctctctgct attggttgcg atggcagcaa ctcgtcctag ccattcaaga 120 agaaagaggc cgcgtgcccc atcactaaga taggtgaagc cgagggatgt aatggagaga 180 tggccgatgc catctcactt ccaaaactga cggcctagat caacaactac ctacagctgt 240 acgcaaca 248 // ID POT2 repbase; DNA; PLN; 1861 BP. XX AC Z33638; XX DT 23-APR-1999 (Rel. 4.03, Created) DT 23-APR-1999 (Rel. 4.03, Last updated, Version 1) XX DE Pot2 DNA transposon. XX KW Mariner/Tc1; DNA transposon; Transposable Element; POT2; KW Autonomous DNA transposon; pogo superfamily; transposase. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-1861 RA Kachroo P., Leong A.S. and Chattoo B.B.; RT "Pot2, an inverted repeat transposon from the rice blast fungus RT Magnaporthe grisea."; RL Mol. Gen. Genet 245(3), 339-348 (1994). XX RN [2] RP 1-1861 RA Kachroo P.; RT "POT2."; RL Direct Submission to Genbank (18-MAY-1994)Pradeep Kachroo, of RL Plant Pathology, University of Wisconsin, 1630 Linden Drive, RL Russels Laboratories, Madison, Wisconsin, 53706, USA. XX DR GenBank; Z33638; Positions 1 1861. XX CC POT2 is a pogo-like DNA transposon. It has 43 bp-long TIRs and CC is flanked by TA target-site duplicates. POT2's ORF of 535 CC amino acids encode transposase. Pot2 is present at a copy number CC of approximately 100 per haploid genome and represents one of the CC major repetitive DNAs shared by both rice and non-rice pathogens CC of M. grisea [1]. XX SQ Sequence 1861 BP; 590 A; 401 C; 367 G; 503 T; 0 other; taacgttgcg taccccctgt tcggcacccc ccctgttcgg cacccaaaaa taacaacact 60 tttattttta tcctccaact tctattataa atatctcgat gaatctgtca cttttggatt 120 tacttttttc tgattttaat tctccatttt ccaatgaagc aatatactga aaaacagctt 180 atatctgcaa ttaacgacgt caataatggc aatccaattg caaaaacctc ccgaaaatgg 240 ggaataccta ggtctacact tcaaagtcga cttaaaggtt ctcaacctta taaaaaagca 300 caaagccctt ttcaaaggct ttccacggaa caggaaaagc atttggctga ttgggtactt 360 acccaaacag ctttagggct tccgccaacg catcaagaat tacgcttttt tgccgaacga 420 attcttcaag ccgccggaga gacaaaaggc cttggaaaac gttggataac tcgttttttg 480 gctcgttatc caatccttaa aacccaaagg ccccgtcgaa tagataacgc ccgggttaat 540 ggcgctacta cggaggtaat taaatcttgg tggctttata ttacgaaccc ggttattaac 600 gctattaaac cggaaaaccg ttggaatatg gacgaaaccg gtataatgga aggcaaagga 660 tctaatggcc tagtattagg gcttaacggg atccggccgt tgcaacgaaa agagcccgga 720 acgcgtggtt ggacgactat aatcgaatgt atatcggcta cgggcgttgc cctccctccc 780 ctcgttatat ttaagggaaa aaacgtacaa caacaatggt ttcccacgga tttaagccct 840 ttcgataatt ggcaatttca tgcaaccgaa aacgggtgga caaataacca aacggctatc 900 gaatggttaa aaaaggtgtt tattccgtat acccaacctt taacccctga aaagcggtta 960 ttagttttgg atggccatgg atcacatata acggacgaat ttatgcttct ttgcttgcaa 1020 aataatattc aactcctata tttaccccct cattcgtcac acgttcttca accattggat 1080 ctatcggttt ttgggccgtt aaaagaagct tatcgacgtc aacttggatt tgttagccaa 1140 ttttgctgtt caacagttat tggaaaacga aatttcctac tttgttatcg aaaagccaga 1200 ttaaaagcat ttatagcaaa aaccattcaa tctggttggc gtacaacggg gttatggccg 1260 gtaaacttgg ttaaaccact tttaagccct tttttgttag aaaatagcaa cgccaacgtt 1320 ataaaagata aaaacaacgg tttgcaaagg gataaaacac cggaaagccc agcccaaaaa 1380 attaacgacc cgtctttact tatttggaaa acccctaaaa cgacccgaga tatccgactt 1440 caactgcaaa aactttccca atccaacaaa accaacgcta cttcacgtct tttatttgca 1500 aaagtccaaa aaagcttcga agccaaagat acccttttgg ctagcgccca gcaaaaaatc 1560 agcttattgg aagcacaact ggaggcaata cggccggtta aaaggaggag ggtggttccg 1620 gatccaaacg agcttttggt taacaaacag aacattattg gattgcagga aaatgatata 1680 gaaaatttgg aacctttagc tgatgaagaa gaggttaatg aaccggagaa gcgtgaaaac 1740 gattgtattt ttgtccgttg ataattttat atctaaatca gtttataaaa gtaggcattt 1800 cgttgttaga ttttcagggt gccgaacagg gggggtgccg aacagggggt acgcaacgtt 1860 a 1861 // ID Copia-2_PR-I repbase; DNA; PLN; 4159 BP. XX AC AAQX01003180; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PR_; KW Copia-2_PR-LTR; Copia-2_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4159 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003180; Positions 6237 2079. XX CC Positions [1603-1890] - Integrase core CC 'AACGA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 59..1630 FT /product="Copia-2_PR-I_2p" FT /translation="MTTKRAEVLLGSGNYFHWEYNMRMTLARKGLLAHVQK FT VKAESEITEAWLVNDAKALGIIAQGVELQHQTKIRSATRAIQAWGTLREFY FT NRTTLHNRVTMTRRLHDFKMDDGTSMAKHLDDFDELVVGLQTMGEPVDEAR FT QLVVLLSSLPAEYEMITSIIENAKDITLIEVKEKLLKEHERLEKKDLATER FT AFKVNAGRFKGGKGDGRKWNVSKRNTGEFRGKCFKCNQPGHMKRDCPVRNT FT GGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIAD FT GKKLAVAGRGTVRLLGLDQKTIKMVDVLHIPGLDRRLLSVGKLAERGLNVE FT FQRSSCVIWGNTSAIALGKKVGKTYVLDCNQEEARFVQYAGADSQWELWHA FT RLGHPNKDAMVKTQRATNGIPAVEQAFKTLCGGCMKGKQTVASFPKCSGTK FT TSRVLELVHTDVMGPMKTPSKGSAKYILTFVDDYSRYVVAYFLKKKSEVAA FT KIKEFTRFYEKQWGNASCAFDQTMERSS" FT CDS 1582..3066 FT /product="Copia-2_PR-I_1p" FT /translation="MGERLMCLRSDNGTEFVNKDVTKFCTLNGIMHQRTVP FT YSPQQNGVAERMNRTIMEKARSMLHYKNVPTEWWAEAVSTAVYLINRSTNT FT HHITVTPHELGFKAKPMLEHLRVFGSHGYAHIDKAKRTKLEPKSFRCMFLG FT YAENVKGYRVFDLDASKVKMVRSVQLDEREVDGIYDTQPAQNGTVVHINEA FT THDVVVPTSLERQTVVEEPMEGVENDAPDEPMESTELEQDQAPPLLLAEER FT FAPTGLELAPYRSPSTTFGEDRVVFHQPTSRSRRARDRVFLLEDGADAEEE FT RKSEGSDGPSSPKRARIDEDGLIAEAVLAYAASLGDAMDIPTTYAQAMASQ FT DAAQWREAVNVELLSHKRNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVV FT RYKTRLVAKGFKQKFGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDA FT DTAFLNSDLTDRVYMDAPFGITNATDYECKLNKAIYGLKQAANAWNKTIH" XX SQ Sequence 4159 BP; 1036 A; 1042 C; 1274 G; 807 T; 0 other; ggttaacagc cgcagctcgg tacgctgccc aagaccaaga acgcctcgcc ggaacgccat 60 gacgaccaag cgcgccgaag tcctccttgg gagtgggaac tacttccact gggagtacaa 120 catgcgcatg acactggccc gcaagggttt gcttgcgcat gtgcaaaagg tcaaggcgga 180 gagtgagatc acggaggcat ggctggtgaa cgacgccaag gcgctgggca tcatcgcaca 240 gggcgtagaa ctccaacacc agaccaagat ccgttccgcc acgcgtgcca tccaggcatg 300 gggaacgctc cgagagttct acaaccgtac cacgctccac aaccgtgtca caatgacacg 360 ccgtctccat gacttcaaga tggacgacgg gacgagcatg gctaagcacc tggatgattt 420 cgacgagctc gtagtgggcc tccagacgat gggcgagccg gtggacgagg cgcggcagct 480 cgtggtgcta ttgagcagcc tcccggcaga gtacgagatg atcacgtcaa tcatcgaaaa 540 cgccaaggat atcacgctca tcgaggtcaa ggagaagctc ttgaaggaac acgagcgctt 600 ggagaagaaa gacctggcca cagaacgcgc attcaaggtg aacgctggac ggttcaaggg 660 cggaaaaggg gacggtcgca agtggaacgt ttcaaaaagg aacactggtg agttccgagg 720 caagtgtttc aagtgcaacc aacctgggca catgaagcga gactgtccgg tacggaacac 780 tggcggtgac gacgacgcag tcttcgcagt gggtacggaa cgcttcaacg gatggctgat 840 cgatagtggt gcaactgctc acatgacccc gcaccgttcc gacctggttg agtacgaggc 900 tctggacgca ggcatggagg tcacgatcgc ggacggcaag aagctggccg tagcaggtcg 960 aggaacagtg cgcttgctcg gtctggacca gaagacgatt aaaatggtgg acgttctcca 1020 catcccgggt cttgacagaa ggttgctgtc ggtggggaag cttgcggaac gagggctgaa 1080 cgttgagttc cagcgttcgt cgtgtgtcat ttgggggaac actagcgcta tcgcactggg 1140 caagaaggtt ggcaagacgt atgtgctgga ttgcaatcaa gaagaggcac ggtttgtcca 1200 atacgctggg gctgacagcc agtgggagct ttggcacgct cgcttgggac accccaacaa 1260 ggacgctatg gtcaagactc agcgtgccac gaacggtatt cctgctgtgg aacaagcgtt 1320 caagacgctg tgcggcgggt gcatgaaggg gaagcagaca gtagcatcgt tcccaaagtg 1380 ttccggaacg aagacatccc gcgttctaga gctggttcac acggatgtga tggggccgat 1440 gaagacgcca tcaaagggca gtgcgaagta tatcctgaca tttgtggacg actactcgcg 1500 gtatgtagta gcatacttcc tgaagaagaa gagcgaggtg gctgccaaga tcaaggagtt 1560 cacgcggttc tacgagaagc aatgggggaa cgcctcatgt gccttcgatc agacaatgga 1620 acggagttcg tgaacaagga tgtgacgaag ttctgtacgc tgaacggtat tatgcaccag 1680 cgtactgttc cgtatagccc tcagcagaac ggagtggcag aacgaatgaa ccgtaccatc 1740 atggaaaagg ctcggagtat gctgcactac aagaacgttc caacggagtg gtgggctgaa 1800 gcggtgagta cagcggtgta cctcatcaac cggtccacga acacacatca cataactgtg 1860 acaccgcacg agctaggttt taaggcgaag cctatgcttg aacacttgcg agtgttcggt 1920 tcgcatgggt acgctcacat tgacaaggca aagaggacga agctggaacc caagagcttc 1980 aggtgcatgt tcctcgggta cgcggagaac gtcaaggggt accgagtgtt tgacttggat 2040 gcttccaagg tcaagatggt acgctccgtg caattggacg agcgtgaggt ggacggcatt 2100 tacgacaccc agccagccca gaacggaacg gtcgttcata tcaacgaggc cactcatgat 2160 gtagtcgtcc caacatcatt ggaacgccag acggtagtgg aggaacctat ggaaggtgtc 2220 gaaaacgatg caccggatga gccgatggag agtaccgaac tggagcagga ccaagctcca 2280 cctttgttat tggcagaaga acgtttcgct cctactggat tggaactggc accctaccgt 2340 tccccgtcga ccacgtttgg ggaagatcga gtagtgttcc accagccgac gagccgttcc 2400 agacgtgctc gtgaccgggt tttccttctt gaggatggag cggacgctga ggaggaacgg 2460 aagtcggaag gaagtgacgg accatcttct ccaaagcgtg ccaggatcga tgaggacggt 2520 cttatcgctg aagccgttct cgcgtacgct gcaagcctcg gtgatgcaat ggacatcccg 2580 acgacttacg ctcaagcaat ggctagtcaa gatgccgctc aatggcgcga agccgtgaat 2640 gtggagctgc tctcgcacaa gcggaacgga acatggactc tggtcccacg tggaacggcc 2700 aaccgtacaa tcggatgtag gtgggtcttt gccaagaagc gtgaccaata cggtcgggtg 2760 gtacgctata agacacggct agtagccaag ggtttcaagc agaagttcgg cattgacttc 2820 tttgagacgt actctccggt ggcgaacatg aactcaattc gagtcgtgct ctcggtctgc 2880 gccgcctatg agtaccggat ggaacagttg gacgcagaca cagcgttcct caacagtgat 2940 ttgacggatc gcgtctacat ggatgcgccc ttcggcatca cgaacgcaac ggactacgag 3000 tgcaagctta acaaggctat ctatgggctg aagcaagctg cgaatgcctg gaacaagacc 3060 attcattgag tgttcctcaa gaacggcttc aagagctgcg gtgcagacca gtgcgtctac 3120 gtcaagtgtt ccaagaacgg tttcacatat gtctgtctct acgtcgacga catgatcatc 3180 gcggcgaaga ctagtgagga aatccgcgag gtgaaggacg cgctgaggaa tgccttcaag 3240 atgaaggagc ttggaccagc aaagttcatt ctgggaatgg agatcgacca tgacacgacg 3300 gctggaacgc tcatgatcaa gcagacgcgg tacattgacg atgtggtgga acgctttggg 3360 cagaagcacg ctaagcctgt cgacaaccca tgcgcagctg gtctcaagtt gtcgaagtca 3420 cagtcgccag gaacggagtc ggaacggaac gcaatgcggt cgaagccgta ccgttccctg 3480 atcgggtgtc tgctatacat cgcgacatgt acgcgcccgg acattgcatt tgtggtcact 3540 cagctttcac gcttcctaga gaatccgggt cagcagcact ggaacgctgc agtgcgtgtg 3600 cttcgctatc tcaagtcgac tcgtcagcat ggaattatct acgaaggtgg aacgggcagt 3660 gttaggctta cagcgttctc ggacgcggac tggggttcga acctcgacga cagacgctcc 3720 gtctcggggg tcattgtggt gatcgggaac gctccggtgg tgttcaagtc caagttccag 3780 aggacggttg cactcagctc tgcggaggcc gaatagatgg ctttgagcct gtgtgttcaa 3840 gaagtgctgt ggacgcgtgc aatgcttaag gacatgggag catttcagcg gaacgctacg 3900 acgatctggg aagacaacca gggtgctatc gctctggccc agaatgctgg gtatcatgct 3960 cggacgaagc acgtggacat tcgccaccac ttcatcaggg agaacgtgga acgtggaacg 4020 gtcacggtcg agtacgtcga caccaagaat caattggcgg acatccttac caaggcgctt 4080 ggaaccaaga cgctcaagta cctgcgcgat ggcaatggca tcaaggacaa gatcaccgtg 4140 ccgtaacggt gagtgggag 4159 // ID Gypsy-47_PIT-LTR repbase; DNA; PLN; 305 BP. XX AC AATU01003736; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_PIT_; KW Gypsy-47_PIT-I; Gypsy-47_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-305 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003736; Positions 36298 36602. XX SQ Sequence 305 BP; 88 A; 62 C; 79 G; 76 T; 0 other; tgtagtagga gatggctaat gcagagccaa atctcgctca caggaatgta caggagatcg 60 aacaccaagt acactagctg gcggttagga attcaataag atagttcagg gttgaactag 120 gaacgggctc tggttgaatg caaccaggac atgtgttagt ctagcagaaa ggaagtgcaa 180 caaccatggt gctgttcact tttccatttg ctcaacggag ctcattggga atacaatcgg 240 cgaactagtc tttggaagtg ccagcttccc catttggagt gtgtttgtta tcgaaaccca 300 ctaca 305 // ID L1-6_VC repbase; DNA; PLN; 2741 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version -1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-6_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-2741 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 485-485 (2010). XX DR [1] (Consensus) XX CC L1-6_VC is a relatively old family characterized by severe 5' CC truncations. CC Coding region is incomplete at its 5' part and is corrupted by CC mutations. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user CC community. XX SQ Sequence 2741 BP; 479 A; 870 C; 951 G; 439 T; 2 other; tcagcaactc accggccctg ctctagccaa gccactggca gcaggcggcc ctctaggccg 60 catagcagcg gaagcaccgc gtgacagtca ctcctctctc tgccttcagc cggtgggcga 120 ctgtatcagc atacgcgctg cagctaaaca cgtaccactg gcccccaacg gtgtcgtggc 180 aaagctggaa acgtgggcgg cagcgccggt caggtcccac ggtcccacgg tcactgctgt 240 atggccgacc aagcaccgcc ggtggatttg gcctactccc gctcaccctg cagatccgcg 300 gcccgcctgg ccctggctgc cggccggacg gcaggaacca acggggacca cgacccgtgg 360 gctcacatta cggaactttt cctgcgctag caccccyccc tgctcagcct cagctccgtg 420 ctgatggcgg aggcaacctg cgacagcgga ccccaccggg gcgctggaca cctgccggac 480 aacatccaca aaacactgca cgccctcagc tacctcccgc cagcacaagt cgtggaaacg 540 gctgcattac cggcggctgg tgactggtgc ttcaacatcc ccctctgggg caacccgacc 600 ctgcccagca gtgaagcaag ggctgtgtgg gggaaagcgc atccggagca ggggcagcag 660 caaacatgct tgaccccggc ttcgtgcctg acgaggaggg tgagaaacca gcagggccat 720 ccgctttacc cggcaagggc tcgaaagccg tcacacacgg cttgcggcct gcacggcatt 780 gcggacggtg ggtgatgcgg tgcagttcag ccgagcagca gtgaatgccc cccatggggc 840 cgcgtgggaa cagtgggtac aaacccatct ggcgccccgc ggcgcgacca gcttccggtc 900 gatcaagcgc ctgcttggga catcagccca gaatggcgag cagcggcagc aaggtcctgg 960 accacccaga gcgtacagca ggactggact ccgaggacac ggtacgtgcg cgactggtgg 1020 gccgtgtcgg ctggcggctg ggggcctcgc tgcacgtgaa actgcgcggc ctcatggtca 1080 aggtccccat acacctacag ctacagctac aggcggtcac ggagcgccgg ccctgcctgc 1140 atgcatgcag cgtacgaaca tgaagcgagg cagcaacagc cgcagcagcc agctacagca 1200 gccatagccg cagccgcagc ggcagcagca gcccccatgc agcaggattg ctgcatgccg 1260 gaaacactgc gacggctgtg ggcggtcaag tgggagcggg agcacaagag gaaactctct 1320 ggcgcctccc ggctgtcgac gccgttcccc tgcccccccg gcaacacgcg gggcatctac 1380 gcggcaccat ctacgtggag ccgtgtggct gtggcgggat tcggaggagc ggcagggcaa 1440 cagcaagcgt gctgcagtgc cctccgcgtg cacacaccac ttctgggagt gcccagtggc 1500 gcaggcggtg atacagcaga tcgcggccta cgtgcccgga cccatatccc cccgggcgaa 1560 cgtgtggctc gcagaagcac cggcaggggt gcagcagtgc gtgtgggacg tggtcagcct 1620 cgcggcgctg tccgccakaa ggaacgtgca cgggcgggac tgcgggtcgc gcaacccccg 1680 caatccaccc cccccccgcg cccgaggccc cagcagcccc cccggggggc tggaggtcgc 1740 gagagccgtc gtgcggtgcc gtcgacttct ggcagcgggt tcagggcttt gcagagctcg 1800 gcgtgccccg gcgcggctgg gacagcgtgg gccccgacca tcccattcta tcggtggtgg 1860 acgggcgcct gtgttgcgta cagccagttg ggctgggaga ggaaggggag ggggaataga 1920 aggggtgctg ggaggacccc ggtagatggg ctatcccgct gggcggggag gggataggcc 1980 tcggagggtt tttctttgtt gggtctgggt agagggcttt tcgaggggga gggcgctcgc 2040 ctcgccacag gttgcgccaa ggcaggggca gtgggagggt ttttgagagg tcgctgctgt 2100 agggcttggg aggagtcgca ggcgaagggg gtggctgtag agcagactgg gtgacgctgt 2160 gtgtgagttg tgccggtgtg gtgctgttgc ctcgaggcat ccctagcccc gtcggtgaac 2220 tgatagctgc tagcctagtc cgtgcccggc ccccgtcgcg tgcgctcgag aggtggttag 2280 cgcgagtttc ttgaaccctg cccgctcccc cgcaacggag aatcgggtga gagaccgggt 2340 gagctttcta atagggcctc gtgccttagt agggaggggt agggtctgta cagggtttcc 2400 gggtttcctc tgtcttagtg aaccctcacc ccaagagccg gatcaggccg gggatggaga 2460 ggagtcttgt ttcgtgtttc aggctcagtg cgcgaaactc gcgtgacgga gccttgactc 2520 gtgagagcgt gcgcgcgtgc gacgcctccc cccacccccg ggggagggag agcggagcta 2580 gcggacctgc ggctctcggc tgcttaggag gggacagagg cccctcgcgc ccctctcccg 2640 tccgcgggag agagcttagg cggtctttcc gttggggctg ggcagcagcc cctggccagt 2700 gtcaggcccg gtcagatact tgtaaccttc acacacacac a 2741 // ID DNA-6N_PPa repbase; DNA; PLN; 343 BP. XX AC . XX DT 31-DEC-2009 (Rel. 15.07, Created) DT 31-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-6N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-343 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1017-1017 (2010). XX DR [1] (Consensus) XX CC containing 16-bp subterminal TIR 16-bp (14-29: 318-329). TSD is CC unclear. XX SQ Sequence 343 BP; 98 A; 87 C; 69 G; 89 T; 0 other; gccgtagcgg aataggtacc cagctggtac ctggtactgg atgaacagaa aatccaaatg 60 gctcctcgca ccagaacatt ttaataaacc ctaaaccctt aaccctgtct aattgctcat 120 aaatgatttt gtgtgtttat ttttttttta aaaccccaaa cccttaaccc tgcacccctc 180 ctaccaatat tttagggact cccaacaatt ggttgcccgt cagtgagctg ctcacaaaat 240 ctgaggcagc tacccaacat ctatgtctgt agacacgcat ggatgacgga cggatgaagt 300 aaaaaggtca gagtgcgagc tgggtacctg ttctgcgaaa tcg 343 // ID Gypsy-25_PSo-LTR repbase; DNA; PLN; 220 BP. XX AC AAQY01000814; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_PSo_; KW Gypsy-25_PSo-I; Gypsy-25_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-220 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000814; Positions 84928 85147. XX SQ Sequence 220 BP; 57 A; 61 C; 51 G; 51 T; 0 other; tgacaacctc ctcccgcacc cagtcaccac agacgcctgt tagcagtggc gcatgggtga 60 acttctatat cgtttcactt caaggatcaa agctctggat gaggtcgtct tcgtgggtac 120 agacgccaga gtatgcacaa gtaggctagt actcgcgaat gccgcgctaa caatcaatct 180 cagttctcaa tttgcagcac agaactcaag tagcttggca 220 // ID RT_GB repbase; DNA; PLN; 243 BP. XX AC D12850; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Ginkgo biloba Ty1/copia-type retrotransposon RT_GB, pol gene for DE reverse transcriptase, partial sequence. XX KW Copia; LTR Retrotransposon; Transposable Element; RT_GB; KW retrotransposon; Ty1/COPIA superfamily; partial sequence; pol; KW reverse transcriptase. XX OS Ginkgo biloba OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Ginkgophyta; Ginkgoales; Ginkgoaceae; Ginkgo. XX RN [1] RP 1-243 RA Hirochika H. and Hirochika R.; RT "Ty1-copia group retrotransposons as ubiquitous components of RT plant genomes."; RL Jpn. J. Genet 68(1), 35-46 (1993). XX DR Genbank; D12850; Positions 1 243. XX SQ Sequence 243 BP; 69 A; 37 C; 68 G; 69 T; 0 other; gcatttctga atggcattat agaggaggac gtgtacctag agaaatcaga gggatttgag 60 gtacatgaga gagattctca tgtatccaga ttgagaaagg ccttgtatgg actgaagcaa 120 gctccaagag cttggtattc gaggatagat gcctacttgc agcagatggg ttttgagaag 180 agtgaggcag atcccaacct ttactatatt gttattggga gggatccact tatacttgtt 240 ttg 243 // ID Copia-38_PIT-LTR repbase; DNA; PLN; 358 BP. XX AC AATU01000943; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-38_PIT_; KW Copia-38_PIT-I; Copia-38_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-358 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000943; Positions 59389 59032. XX SQ Sequence 358 BP; 115 A; 74 C; 96 G; 73 T; 0 other; tggccagcat ggcgatcaga cgccgagtcg ccgaaggcgg cgaagagtcg gtagaggcca 60 gacagatgct ggacagaatt aagtgtgtca acacaataaa agacttactt tcattaaagc 120 aatagtaagt actagagtaa aacagatcct acgagcactt ggatagagtg caccagcagg 180 cagaggctgt ctgccaacca gtgcgatgag gacttgaagg cagaagggag agatgccgtc 240 cgaggacgag ctcacttctt cttctgcctc agactgagca caagtctaga gaataggtag 300 ttaagagtaa aagtaaataa actgttttga gagctactct acagcgttca ttctaaca 358 // ID Gypsy-43_PIT-I repbase; DNA; PLN; 4944 BP. XX AC AATU01004061; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-43_PIT_; KW Gypsy-43_PIT-LTR; Gypsy-43_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4944 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004061; Positions 7959 3016. XX CC Positions [3889-4170] - Integrase core CC 'ATCTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 2088..3926 FT /product="Gypsy-43_PIT-I_2p" FT /translation="MPGLHVDLEKVRGSRHFGLFDFIKGYWQLPLAKECQD FT LLSYMTHRKIYTPTRVPQGSADAALYFQSTIERCFAALLYKHLLVWIDDLL FT LYAVDIDTYLDKLQELLQLTAKFGFKLSVAKSCVYKREVKWCGKLIDGEGV FT KHDPERIEALRSMPKPSNAGELQQFLCSTNWMRDSIVDYARLARPLQDTLD FT EAMTQASRRTKRVAAGILITLTEQECEAYDAVKQALADTATLAFPNPDSEM FT VLLTDASDIGWSVIVSQVPSWKSDADIQDQQHELLIRLGGTFTGAQKNWSV FT IEKEAYPIIMACDKLSYLLLPRGFRMYCDHRNLIHVFAPGREVKKHVRGKL FT LRWSMKLMEYRYTIEHIEGTHNTWADMVSRWAETRPSPSVTVKHITLRCQR FT DENHSDEPVGRTYAIPVPIRPFSDGNFAWPTVEELRVAQQRHIVDRPKGLT FT CRSEDLLYSSDRIWVPASETELVQRLLVIAHCEAQGHRGREALLNVVNRRF FT FIRNLSATVKTFLTGCPSCQHVKGGKVVMRPWADTFRCNERNGALHWDYVT FT LGYSYDDYKYLLVLKDDATHFCELVPCAVPTAAVTTDAILDWHSRYGASRV FT WISDTRRSLQEPSCG" XX SQ Sequence 4944 BP; 1360 A; 1124 C; 1385 G; 1075 T; 0 other; aagttaactt aagtttccaa aggaaacgac atgaacaacg aagcaactac gacgagtgca 60 accgctgacg ctgctgcagc agcgacgcag cagattgtgg gtgctgccgg accgaccctg 120 cagaccacta gcacgagtcg agcactacgg ccaaggacaa cggtcggttc ctcaacggaa 180 caagcgggtc aagccaagcc agcgcagagc aagggcaaga aacccgcaat gtagacgaaa 240 gcatgacacg acgatctgga gctccaccag ctcctaacag gtcaagcact ggatcaatgt 300 cgaggactgc gaacctaagg ccggactacc ccacggtggc ccatccgatc tttgcggtca 360 ctgtggcgcc gaaggtggaa gatatctcgc atgaagcgct tgcccaatgg gtagatctac 420 gtctggagta cgaagagatc atgagggcgc gctgtgattc gtcaggagaa gacctgaagt 480 ccgtcatgcg ttctgtgaag aactcgttcg acgacagctt cctcgagacg ttgtgtgaga 540 caaaatggga gaagacaaaa gatgaactta ccgatgagtt tatctggaac tgggtcatgg 600 atacagtacg aaacttcaaa aacaaagctc taccaaaagt tgacgagttg ttccaagacc 660 agttagtaat gtcaacaacc aagtcggata tcgatgcacg agttatggac tacttccacc 720 tgtgcaacac gattgtgaaa atcaatggat tagctacttt gttctcggat gaggaaggta 780 ctaagaagaa gtgcaaggtg ctattgaata gcctgcctgg agaattaaag aatcgagtga 840 aaaacgagat tgacttcaga tttccgggtg ctaagtccaa cgtgtcggta ctgttcaaga 900 ttgtgagtga gaaggccttg gagatagacc gtgaggtcaa agctttgtca agaaataaaa 960 agcgttctca ggcggtggaa ttgaagcaat cagcaaccac acgaccatcg aaaatagcta 1020 gactcggtaa gcgagtcgtt cgcgaacctg gaactcaggc tgcaccgcgg atattttgga 1080 ccaaatcgga gaagaaccat cccgggccaa aagaaagttg ttagacttgt ggtggccagc 1140 accggcaagt tgaatgccca gaaaaggccg aggacgacgc tgccgctacc aggaagccga 1200 aaaaagggag gcaacgtaaa cctaagaagg attagcgagt gttcacctgg tcgagcggga 1260 caaacccgat ttctacgtgt cggtggcgtt gtcgatgtgg aatattgtgc agactctgga 1320 gcagtgacat cgtgtatcag ctccacgact ttaaagaaaa tttaaagaac aaggtgtgaa 1380 gtgtgaggtt gagcggttag gaaacccgat cgagtgcaga ctgcctggcg ataagaagac 1440 gtgggctcat gagacgacaa agttgaagct gtcgctcatg acagcagcgg gacctgttaa 1500 tatccataaa cctgtgccgt tgtctgatac tgaaaaataa ggatgatgaa tttctacttg 1560 gagatgatat gctaaagttt ttgggcattg acgtcgagag acagttggag ctattggcaa 1620 caccaaactg caatgatgga gatgatgacg aagaaacgcc tgatgtgatg gtaggaggca 1680 acgacgctga ggacatccga gtcgctgttg aggcaatgct ccagcgggct ttggaggaag 1740 gttttcccgc tgataaactc gagcggctgc gcacaatggt gcatgcgtac gatgtctgga 1800 gactcgtact cggcaatgac ccccctgcaa aggtcgagcc gatgaaaatt aagatgaaga 1860 cgggctgtcg accatacaag gcgaaggctc gcaagtatgc gccggaatac caggcgttcc 1920 tcgagtcgtt caacgacatg ctcgtcaaac tggggtgggt gtacgagaac cccaccagtc 1980 ggtgaacatg tgctgcttta ccactgcgca agcgtggtga tggtggtttt cgccagactg 2040 tcgaccacaa accttttaac gctcagacag aggttatagc aggtctgatg ccaggccttc 2100 acgtggattt ggagaaagtt agaggtagca gacactttgg actgttcgac ttcattaaag 2160 gttactggca gctacccctc gccaaagagt gccaggacct gctgtcctat atgacccaca 2220 ggaagatcta caccccaact agagttccgc aaggaagtgc ggacgcagcc ttgtattttc 2280 agtcaacgat cgagagatgc tttgcggcgc tgttatacaa gcacctgcta gtctggatag 2340 atgacttact gctgtatgct gtggatatcg acacgtacct cgacaaattg caggaactgc 2400 tacagctcac ggcgaaattc ggcttcaagc taagtgtagc caagtcctgc gtgtacaagc 2460 gtgaagtaaa atggtgtgga aagttgatag atggtgaagg tgtgaaacat gaccctgagc 2520 gaatagaagc tctacgtagc atgcccaaac cgtcgaacgc tggtgaactt cagcagtttc 2580 tctgttctac gaactggatg agagacagca ttgtggacta cgcccgattg gcacgtccac 2640 tgcaggacac actggatgag gcaatgactc aggcttcccg gcggaccaag cgagtggcag 2700 cgggtatact gatcacactt accgagcagg aatgcgaggc gtatgatgcg gtgaagcagg 2760 ctctggctga cacggccacc ctggcgttcc caaatccaga cagcgagatg gtcctgctga 2820 cggatgcctc agacattgga tggtcagtga ttgtatcgca agtgcccagt tggaaaagtg 2880 atgcagacat ccaggaccag cagcacgagc tgcttatccg tcttggtggt actttcactg 2940 gtgcacaaaa gaactggagt gtcatagaga aagaagccta cccaattatc atggcttgtg 3000 acaagctcag ctatctgttg ctaccgcgtg gatttcgcat gtattgcgac caccgcaacc 3060 tgatacatgt cttcgcccca ggtcgtgaag tgaaaaaaca tgttcgtgga aaactgctga 3120 gatggtcaat gaagttgatg gagtatcgct acactatcga acatattgaa gggacacaca 3180 acacttgggc tgatatggta tctcgatggg cagaaacacg cccttcaccc agtgttactg 3240 taaagcatat taccttgcgg tgccaacgtg acgaaaacca cagtgacgaa cctgtcggta 3300 ggacatacgc catcccggtg ccgattcggc catttagtga tggaaatttt gcgtggccaa 3360 cagtcgaaga actgcgtgta gctcaacaac ggcacattgt ggatcgcccg aaggggctga 3420 catgtagaag tgaagactta ctgtacagta gcgaccgaat atgggtcccg gctagcgaaa 3480 ccgagcttgt gcaacggctc ctagtgatcg ctcactgtga agcacagggc catcgaggtc 3540 gtgaagcgtt actgaacgtg gtgaatcgga ggtttttcat acggaatctt tcagctacgg 3600 taaagacttt cctgactggc tgcccttcat gccagcatgt caaagggggg aaggtagtga 3660 tgcgaccgtg ggctgataca ttccggtgca atgaacgaaa cggggcttta cattgggact 3720 acgtgacgct aggttattcc tacgatgact acaagtactt gttggtgctt aaggacgatg 3780 cgactcattt ttgtgagctg gtgccgtgcg cagtgccaac agcagctgta actacagatg 3840 cgatactaga ctggcacagt cgctatgggg catctcgtgt gtggataagt gacacaaggc 3900 ggtcacttca agaaccaagt tgtggctgaa gtggcaagac gtctcactag tggacagaga 3960 tttacggtgg cgtatagccc atggacaaat ggatcaattg agaggctcaa tagggactta 4020 gtgcaagtct ttagagcaat gtgtcttgaa gccaaggcgg acattcgtga ttggccacat 4080 ttcattccgg tggtccaatc aaatctgaac cataccccgg ttccatctct tgggaacacg 4140 gcgccagtgg agcttttctg tgtcctacct gctgcttctc cgcttgactt tgggtttaac 4200 acccaagaca acgcttttct tgagctcggt accacttcca gccagatcat gaagaagttg 4260 gcatcgctgc aagctagggt gcaagagatg cacaaggttg tgcaggaagc aagggcgaat 4320 caaacgagac ggaatcagaa ggcacagaaa acagccagaa aggcgaactt cgatgttggt 4380 gactacgttt tgaggtcaag ggtggaccaa aaacacaacg acaagctact ggtcacatgg 4440 ataggtccgt accaggtaat tggtacagac gatcactcct ttcgtgtaca gcacttagtg 4500 actggagcgg aagcagacgt gcacgcctca cgcctcaagt tctacgcaga tgcgtctttc 4560 gaagtatcgg aggagatccg agagcacgtg gctgctcaag gaatcgtcct tacggttgcg 4620 gagctcaaag agcaccggtg gaactcggcg aagaagtgtc acgagatact ggtagggtgg 4680 aaaggtctag agccaattga ggactcgtgg aagtcgctga atacattgta tagggatacc 4740 cagtgatggt gaaacagtac atagctgcgg caagtgatgc cgagctaact gtaacattgg 4800 agcaacttta ggacttcaac ttgaagaggt tatgtcgttg gatcaaggta ccctataatt 4860 ggtacatcgg tacctccgag caacatcgac accaatccaa tgcttggcgg catcaaagtg 4920 cgcggtcaag tcttggtgag gcgg 4944 // ID Ambal-3_FCy repbase; DNA; PLN; 13046 BP. XX AC . XX DT 26-JAN-2010 (Rel. 15.01, Created) DT 26-JAN-2010 (Rel. 15.01, Last updated, Version 1) XX DE Ambal-3_FCy is a family of Ambal non-LTR retrotransposon - DE consensus. XX KW Ambal; Non-LTR Retrotransposon; Transposable Element; KW Ambal-3_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-13046 RA Kapitonov V.V. and Jurka J.; RT "Ambal, a novel clade of non-LTR retrotransposons from diatoms."; RL Repbase Reports 10(1), 108-108 (2010). XX DR [1] (Consensus) XX CC The Ambal-3_FCy consensus sequence was derived from 4 copies >99% CC identical to each other. Ambal-3_FCy is characterized by long CC 20-bp TSDs (also confirmed by one Ambal-3_FCy element inserted CC into a Copia-2-LTR_FCy sequence). We expect that this family is CC currently transposable. CC The consensus sequence was derived from sequence data produced by CC the US Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 1231..4593 FT /product="Ambal-3_FCy_1p" FT /note="unknown." FT /translation="MPRFNNNFKNKGSRSAAKHHSKTLPGKNPTRTKTATA FT KPSRKKPPASPASVESHFARTTPSSLPVKATNMVISGDNGKNPRSPSSTED FT KIAPKKTDSRNTPPRDLLQGTTITPDKPDESISPPPKITNKSDGLNTPWEA FT VTKVVTSRKYKRGTTSTDLTHLQSTDDESDSSSTPSALIHLKNDKKLSTSI FT LKPKHVSRGKTKEDALSFTDSSKSTDESSESGSASLSAASEKSEDTATLLK FT GLTVTKTVHHQDDSTVKSISEATSDTIMQDIYEKTPTSPPGSVNTKTTAAS FT TIASSKSALSSSLKVPANWKNSTTIDIPKTATTTTAAARQTTIAEANIALE FT KTRSYDYLKEGKFATTKAYEDLATRSIASNKGFTHYEGLKDGTVLTENVQP FT DLDSIQDGITVNFNQAALQLLPNGWDDPEVTPAKLTEAVREIAVPRKPWKD FT DTIRQDARAMLIKLARTSPEIFDESWSYTTGFITNCKEGALWKAANKIYGS FT QWPWKYSNSLPKLPPKHQQKQKNRVVIPKSSIKTITAARGRFMTRPGGQQT FT PTTEQAIKDTSEKNPRNYQTFITLQLPAISVAGQGPGEVQALENFNLAFEI FT ILASDRTCVIYVWPLKFHNNRTVLPYSKKHLDDSYPKARKIESKNELQRYV FT SSAYFSEGKKSWLKMYCGHNEPIQDLLSDTANQTLQDHQMNVYKETLQSPT FT PMICGWLLGAEPRTFNCKQFTDLLNSLPKFEKLPVACKKQALKKSKTEKLE FT YGEGTMAIVILCSSSYRDPTNVAMKATFNRKTAKAISERPDGANFKYIEYY FT ADTKSKAATRKQLDSAGVAMIKQKKWSQNISQIRIEGIDNLDHPILLTNPL FT STPSNPLPDIPTTCKQSILSIKCQTNYKFFLFSQIHEQADKSIIGICHKDQ FT RAEAEMILGHLQVYQKEEYGNKIEAWYTQQAIDSAVGYSICKDTGQVNHAD FT DDNDADTFDGFCTSNSPARTANAIANGTPLEDEYDGNLDDVDSDDDNEPEL FT KIDMKIMFNTSNLGDGGGFDDGHSVSTQLTSVSQATALIGQIGGPQTNIDD FT VSTVTTEASPGSQAINTIPNQIMQQDSFPMNDATNSLDRTPAPFTNIASNI FT ASLRQTGVQNDNQ" FT CDS 4583..10780 FT /product="Ambal-3_FCy_2p" FT /note="Contains the APE (pos. 159-396), RT (pos. FT 830-1100) and RNase H (pos. 1575-1742) domains." FT /translation="MTISSQQRQRQSDQPTSAGRQEITPRRRRKRRQDLNE FT NQNAFFQSNNSRANPYTEEQAAKDSEAFGDDYPPSPGKNCTLITFQNIGPQ FT KDTFFDHKSDKTSKAFKESQAGIALYAEISLVESKLEAADRFSTRMKRDSP FT HSFSNVTSNIHEKEATIWNQAGGAAFTLQNNIKAHQTTYGEDSTGLGRWTW FT TRLRGKATTFTTIISAYRPCKNGTGLSTVWSQHCRYFRESDSIKLPNPIDE FT FDRDLIHEVEKLKLRGDNIIIGIDMNADVRKNNLTTQLQKLHLRDAILTAH FT PTKSPPATFNRNRSRIPIDSMWVSPNLEITRAGYMPFDGGLPAAPSDGHRM FT LWLEVDNFSFLGKHIPTSTPPLAVSRVKSHDPRSRRRYQRLVRKEYKKHRV FT FKITENLAKAQAFFLTNDPTAYDKGVPFVAADGVSVEWSSVHPDFVIPRTT FT LFTIPEEEIAEGATYQQKRKLHHAILDKAENSIHNISRNIRKGVDKKMRQI FT YAGATAYSPDNQGLRDTVTFWSRMVKLKKKVNTSRTTLKRLAKKLKLPWLA FT NSNTSLQTAKEKLTEAYTEMKKGKPLAEKKRLKFLREQIKNLKDQKTTRKT FT LIPSQIKSLLKQHRAPKEYRKTLIDALAKEQEILRKTPDKAKIRKQIEARI FT KREQKSRNIGKAARHIRRKGLKDPVLRAVANDQQGNPYDCNSQETMVRAMA FT KSNSERQQQCVQTPFQMAPLLAVFGYLMDNDEAGQQVMDGTFIPPAGTDSV FT AVELLETLKMEDSIRALGPLDMTITPEDNRAGWKKQTERTSSEPMGLGFNH FT YKAACLTDDLNKVDTFFRNFPLQMGTSPKLWKLITDFQIFKRSNVFHVDSM FT RLIQLMDAEYNMNNKTLGKRVLAHAEKAKAVSPDQYGCRKNHTAINACLNK FT VLLMDGMRQKKQAGAIAMNDAKGCFDRINHTFAILVLMSFGVSSLLARSVF FT ETLQTADHHIKTGYGRSGKAYGNNDEEEPHQGIGQGNGLGPTLWALLSSIL FT IKNMKRHGHGVNLRSALSLSLVSIVCFAFVDDTDLAITGKDRLTTGEEVIE FT EFQPALDRWARSLIVSGGALCSEKSFCYLIDFQWTGTDWEYRSKDDMPGSF FT TLIDKHGTRRELKRMNAEEAEKTLGVYLAMDGNDGRQFRHLHEEAVKFGDQ FT IRSSKCDNNTAFYTYTNCFLKSMEYCMPTTDFTETQWNDILRPALRKALQR FT SGIAANFPREVLYSPDLYQGLNIYNPRFCEGIKKISTLIQESVNQSSTGDL FT IRLTAEGLRLELGIPLIAGRIDWNIVQAYTTKVWYRGVLNFASEHNIEFIE FT DYPQIPLLRQNDQYIMQGFIKAGYRNKELQILNYMRMSLRAISVADITSVS FT GLTINHLAWELREGNLLREHYDWPRDPPSFTKKQKDFWKKALGNTFIRPQS FT ILEHRILAQPVSTWQSLSALDDWPYFYNPGEDRLFKKHGNSWKIYSHHSGR FT VRNRKYRFNNQTCESLPTSTNLLASVSLRHTPANNPNPVVLAKECTSEWHY FT EEPDTDLASYDPTEGPFACIQDAFDSSRASEKILLDKVELPADDCQAIATG FT ISQGTARAISDGSYDPNTLKGTSALIIVADKDDKQPLEAANWVPGLASDQS FT AYRSELAGVAGILAAVAIIVQHYELTTGSITIALDGESALDVSAAATIMNI FT GQADFDLVQEIRTRISILPITVNWKWVEGHQDRKGKSMDWWARKNTIVDGK FT AKSYLKQCKREKRVHRPVRLLYEKWAVYVNGIKISKIDTEPLYATLFAPRS FT LEYWKKHHDIKVDPQHDTDWEASQQAIKKLPQGQKRWLSKQASGCIGVGHV FT LKIRKWQNHSRCPLCNKDEEKTSHVLTCQDKDSKANFKKNLDTILKPTLDS FT TNTAPSLSKAILEILQIWRQDKKVNPSDFTLNFGIRAAIKDQNNGLGWTNF FT ALGRWSRKWQVSQQQFYDRIRSKKKSKRWAAAIIHKLLLTAWDQWDFRNKI FT AHSDEGPGAIALRQRLDAEMLEETRSDNRQILRQDTFLFTKWTYTELQALP FT SQQKQQWLRSVFQARKAINYNAPTVPYISAMSVAMQNYLD" FT CDS 11164..12522 FT /product="Ambal-3_FCy_3p" FT /note="unknown." FT /translation="MAKITKPNALWNTIKPTTAELLKNDEAIKQLTAELAT FT LKRTDVALDEEMRDICQKFWDKTNEVKNLHTNATSHFNSLQGQITESTSTI FT MTIYEAITDTPSTLKALQDQQKAANTAHKTAEGATISRHEHLKRVREAIDS FT YRQGVDAAEGLHADAKIKINELQETLQASQSATEEISKSIEGHLPSLKNLD FT TKYTKVKNAQEAATLETSNKDNELTDATETALDVLADEILISDGRRVIKRV FT LLNSLGKKFGFKKWTCSDQKYNRQLWPQVEGILCILVDLPLFFSLAELQTL FT LGYSPHNNNVKLALKKMTEEEMLIVEEDKSQTKNYYLGETARAILDRKIIP FT DINVARPADLAATIQEHFDAGHLQANKYKKRKAKTATPEHTTDTPFATPSP FT KKKRKFTLEEEATTDSEKKGSTSDNALEISSEEDTSEEETSDSDNDKSANE FT VPQDHAEV" XX SQ Sequence 13046 BP; 4719 A; 3562 C; 2371 G; 2394 T; 0 other; acttccctcg tttttcgtgg acgtcaatcc aattaaattt tcagtactta aaacacgtag 60 aatcctacga cgaattcagc caaaaatcgc ttacttcaca tcaaagacta tccgaccacc 120 gcacatatca ccaaccatca ctactgctgt aacctaatac gaccaagcct gttacaacca 180 atacccccga tttcactcaa acctatcata cactgaccac cgaccaaggc caaaacacca 240 cgttaaccgc cattttcacg taaattcgaa gcgtcgtgta agagacatct cgactttcaa 300 taaaaagaag aacaataccg ggacttgaca gccaaaaatt cactgctacg accagcccta 360 agtaaaaaaa gcgcgcccac taccagacgg ccccatcgtt aagcagccac acttagcacc 420 ctcaccttac ttactagaca cagaacaccc acacgctcac cgcctaagta aaagaagtga 480 cacacaccag acgccactct gtgatatata tccacactta tcaccaccaa ctcagttacg 540 taaccaggaa gcgacaccct tccccacaac cgatcagcgc ctaagtaaaa gcagcaccag 600 cgtaacaaga ctacacttcc tcacccagtc acaattatca gcgacctaag ccccaacttt 660 acacaaggac tacgaactgc taaaaaccaa tcccggcctc ggcagccagg ttctaacacg 720 ttctctcccc taagtaacct accaccaaca gaaaagaact cccgcagaac cgatcctgac 780 cactcacact tagttcacaa acactcactt cagattcacc aggcagccaa aaatcacaac 840 gaccaaaaaa gccacacagc aacctcagca cgcttccgat ccctacaaga acaacagtcc 900 aatacagagc caaaccgacc cccgaagcgg cctgcaaacc cagttgaagc tagatccatt 960 ttccactgac ctccaaagat ctcggcaatc ccggttgaag ctagatccac tgtccattcc 1020 catatccaaa gccatatcca agatatcaaa aatatccaaa caatctaccg atgcaacgct 1080 ttccgaccat cgatacgaaa atacaaccaa attccgaaca taccgatcat caaatcaccc 1140 tcaccctttt catccacaaa tacctccctt gtaaaacaac ctattcacct acctctttca 1200 acaattaacc tacctctcca ctaccaaatc atgcctcgtt tcaacaacaa cttcaaaaac 1260 aaaggttccc gctcggctgc caaacaccac agcaaaacct tacctggaaa aaaccccact 1320 cgtactaaga ctgccactgc caaacccagc cgcaagaaac caccggcatc accagcctcc 1380 gtggaaagcc attttgctag aacaaccccc tcgtcattac ctgtcaaggc caccaacatg 1440 gtaatttcag gagacaacgg gaaaaatccc agatccccaa gttctaccga ggacaagatt 1500 gcccccaaaa aaactgacag ccgcaacact ccacctcgcg acctcctcca aggtactacc 1560 atcactccag ataagccgga tgaatcgatc agccctccac ccaagatcac caacaaatct 1620 gacggtctca acactccttg ggaagcggta acaaaagtgg ttacttccag gaagtataaa 1680 aggggaacaa ccagtaccga tcttactcac cttcagagca ccgatgatga atcggactca 1740 tcgagcaccc catctgcact catccacctc aaaaacgata agaagctaag caccagcatc 1800 ctcaagccga aacacgtctc ccgtggaaag actaaagaag acgccttaag tttcacagac 1860 tcgagcaaga gcaccgacga atcatcggag tcaggatcag cctccctaag tgcagcaagt 1920 gaaaaatcgg aagacacggc cacattgctg aaaggtctaa cagtaaccaa gacagttcac 1980 caccaagacg actccactgt aaaaagcatt agcgaagcta caagcgacac tattatgcag 2040 gacatttacg aaaagacacc aacatcacca cctggtagcg tcaatacaaa aaccacagcg 2100 gcatctacaa tcgcttcatc caagtcggcc ctctcgagct ccctcaaggt tccagccaat 2160 tggaaaaact cgaccaccat tgacataccc aagaccgcca caacaacaac agcagcagca 2220 agacagacaa caatagctga ggccaacatc gcacttgaaa agactaggtc atacgactac 2280 ctcaaagagg gcaaattcgc cacaacaaaa gcgtatgaag acctcgccac acgcagtata 2340 gccagcaaca agggcttcac tcactatgaa ggactaaaag atggcactgt actaacggaa 2400 aatgtacaac cagacctgga ctccatacaa gacggtataa cagtaaactt caaccaagca 2460 gcactacaac tcctgcctaa cggatgggac gacccagagg ttaccccggc aaagctgaca 2520 gaggcagtca gggaaatagc agtcccaaga aaaccttgga aagacgacac catcagacaa 2580 gacgcccgag ccatgctgat caaattagcc agaacgtccc ctgaaatctt tgacgaatca 2640 tggagctaca ccaccggctt cattacgaac tgcaaagaag gggcactatg gaaggcagcc 2700 aataaaatat acgggtcaca atggccttgg aaatactcta actctcttcc caagctccct 2760 ccgaaacatc aacagaaaca aaagaataga gtagtaattc caaagtcttc aatcaaaacg 2820 atcacagctg ccagaggtcg gtttatgact cgaccaggag gacaacaaac gccaactaca 2880 gaacaagcca tcaaagacac atccgagaag aatccacgca actaccaaac cttcatcacc 2940 ttacaacttc cagcaatatc ggtagcagga caaggcccag gggaagtcca agcactagag 3000 aacttcaacc tggcattcga aataattctg gcatcagaca gaacctgcgt catttacgtc 3060 tggcctctta agttccacaa caacagaacg gtactaccat acagcaagaa acatctggat 3120 gattcctacc ccaaagcaag gaaaatagag tcaaaaaacg aactccagcg ctacgtcagc 3180 agtgcttact tctctgaagg aaaaaagagc tggctcaaaa tgtactgcgg ccacaatgaa 3240 ccaatccagg acctcctctc agacacagcc aatcaaacct tgcaagacca ccaaatgaac 3300 gtatacaaag aaactctcca atcaccgacc cccatgatct gcggctggtt acttggagca 3360 gaaccgagaa catttaactg caagcagttc acagaccttc tcaactctct tccaaaattc 3420 gaaaaactac cagtggcatg caaaaaacaa gcactaaaaa agtcaaaaac cgagaaacta 3480 gaatacggcg aaggaaccat ggctatcgta atcctatgca gctcaagcta ccgcgatcca 3540 acaaacgtag caatgaaagc aaccttcaac cgaaaaacag ccaaggccat ctctgaacga 3600 ccggacggag ccaacttcaa gtacatagaa tactatgcag acaccaagtc caaagccgcc 3660 actcgcaaac aactcgactc agcaggagta gcaatgatca aacaaaaaaa atggtcccaa 3720 aatatcagcc aaatacgcat cgaaggcatc gacaacctag accaccccat tctgctcacc 3780 aacccactct ccactccaag taatcctctc ccagatatac ctaccacctg caaacaaagc 3840 atcttgtcaa taaaatgcca aacaaactac aaattcttcc tattcagcca aatccacgaa 3900 caagccgata aatcaatcat tggcatctgt cacaaggacc aacgcgctga agcggaaatg 3960 attctgggac accttcaagt ctatcagaag gaggaatacg gtaataaaat agaggcatgg 4020 tatacccaac aggccatcga cagtgcagtg ggctactcta tttgcaaaga cacaggccaa 4080 gtcaaccatg ccgacgacga caacgatgca gatactttcg atgggttctg cacctccaat 4140 tccccagcaa gaacagcaaa cgcaatagcc aacgggaccc cacttgaaga cgagtacgat 4200 ggaaacctgg acgatgtcga ctccgatgac gacaacgaac cagaactcaa gatagacatg 4260 aaaattatgt tcaatacctc caatctaggg gacggtggtg gatttgacga cggccactca 4320 gtatcaacac aactgacatc agtatctcaa gctaccgccc ttattggaca aataggtgga 4380 ccccaaacaa acatagacga cgttagcaca gtaacaacag aagcaagccc tggcagccaa 4440 gctatcaaca caatacccaa ccaaataatg caacaagatt cgttcccaat gaacgacgca 4500 accaattcct tagataggac accagcccca tttacaaaca ttgcaagcaa cattgcctcc 4560 ttacgacaga ctggagtaca gaatgacaat cagtagtcag cagcgacaac ggcaatccga 4620 ccaaccgacc agtgcaggac gccaggaaat aacacctaga agacgaagaa aacgcagaca 4680 ggatctcaat gaaaaccaaa acgccttctt tcaatccaac aactcccgag cgaatcccta 4740 caccgaagag caggcagcca aggacagtga agccttcggc gacgactatc caccatcacc 4800 cggaaaaaat tgcaccctca tcactttcca aaacatcggc ccacaaaaag atactttttt 4860 cgaccacaaa tcagataaaa cgtcaaaagc cttcaaggaa agccaggcag gtatagcgtt 4920 atatgcagaa atcagcctag tagaatcgaa actagaagca gcagaccgct tcagcaccag 4980 aatgaaaagg gattcaccac actccttttc aaatgtaaca agcaacatcc acgaaaaaga 5040 agccacgata tggaaccagg caggaggagc ggcattcact ctccagaaca acatcaaagc 5100 ccaccaaaca acctacggag aagactcaac aggactagga agatggacgt ggactagact 5160 cagaggaaaa gccacgacct tcactacaat aatttcagcg taccgtccat gcaaaaacgg 5220 cacgggactc agtacagttt ggtcacagca ttgcagatac ttccgagaaa gtgatagcat 5280 caaactacca aacccgatcg acgaattcga cagggacctc atccacgaag tggaaaagct 5340 gaaactgcga ggcgacaaca ttatcatagg aattgacatg aatgctgatg taaggaaaaa 5400 caatttgacg acacaacttc aaaagctcca cctacgagat gcaatcttaa cagcacaccc 5460 aacaaagtcc cctccagcaa cattcaaccg caaccgatcc cgtatcccca tcgacagtat 5520 gtgggtctcc cccaacttag agataacaag agcagggtac atgccattcg acggcggctt 5580 accagcagca ccatcagacg gacatagaat gctgtggtta gaagtggaca acttctcctt 5640 tttaggcaaa cacattccta cttccactcc cccactggca gtcagtaggg tcaaatcaca 5700 tgacccaaga agcaggcgaa ggtatcagcg actggtacgg aaagaataca aaaagcatcg 5760 cgtcttcaaa ataacagaga acctggccaa ggcacaagca tttttcctaa ccaacgaccc 5820 aaccgcctat gacaaaggcg tgccctttgt agctgcggat ggtgtatcgg tagagtggtc 5880 aagtgtgcat cctgacttcg taataccaag aacaactcta ttcacaattc cagaagaaga 5940 aatagcagaa ggtgcaacat accaacaaaa aagaaagctt catcatgcaa tcctcgacaa 6000 agcagaaaac tccattcata atatatctag aaacatccgc aaaggagtag acaaaaaaat 6060 gagacagatt tacgcaggag ctaccgcata ctcaccagac aaccagggtc tacgagatac 6120 agtcacattt tggtctcgca tggtcaaatt gaaaaagaaa gtcaacacaa gtcgcacaac 6180 cttgaaacga ttggcaaaga aactgaaact accttggctc gccaattcaa acacttcact 6240 ccaaacagca aaagagaagc tcacagaagc gtacacagaa atgaaaaagg gaaaaccact 6300 ggcagaaaaa aaacggttga aatttctgcg agaacagatc aaaaacttga aagaccaaaa 6360 aacaacacga aaaaccctaa tcccatcaca gatcaaatcc ctacttaaac aacatagagc 6420 accgaaagaa tacaggaaaa cactgatcga cgcactcgca aaggaacaag aaatactaag 6480 aaaaaccccc gacaaggcaa aaataaggaa gcaaatagaa gcaaggatta aaagagagca 6540 gaaatcgaga aacataggaa aagcagcaag acacatccgt cgaaaaggtc tgaaagatcc 6600 agtactacga gctgtcgcca atgaccaaca agggaaccca tacgattgca acagccaaga 6660 gacaatggtt cgagccatgg ccaaatcaaa cagtgagcgc caacaacaat gcgtacaaac 6720 tccatttcaa atggcaccac tactagccgt cttcggatac ctaatggaca atgacgaagc 6780 gggacagcaa gtaatggacg gtaccttcat accaccggcg ggaacagact cagtggcagt 6840 cgaacttctg gagactctaa aaatggaaga ttcaattcga gccctaggac ctctagacat 6900 gacaataaca ccggaagaca atcgagcagg gtggaaaaag caaacagaac gcacatcctc 6960 tgaacccatg ggactaggtt tcaaccacta caaggcagcc tgtctaactg acgacctcaa 7020 taaggtcgac acattcttca gaaactttcc cctgcaaatg ggaacttccc caaaactctg 7080 gaaactaatc acagacttcc aaatttttaa gcgtagcaat gtcttccatg tcgactccat 7140 gcgtctcatc caactaatgg acgccgaata taacatgaac aacaaaaccc taggaaaacg 7200 agttctggcc catgcagaaa aagccaaagc agtatcacca gatcaatatg gctgccggaa 7260 aaaccataca gcaataaatg catgcctcaa caaagtcctc ctcatggacg gaatgcgaca 7320 gaaaaaacaa gctggagcaa tagcaatgaa cgacgcaaaa ggatgctttg acagaatcaa 7380 tcacaccttc gcaattttgg ttttaatgag cttcggagtt tcatcgctac tagcacgatc 7440 cgtcttcgaa acacttcaaa cagcagatca tcacattaaa acaggatacg gtcgatcagg 7500 taaagcctac ggtaacaatg atgaagagga gcctcatcaa ggaataggac aaggcaatgg 7560 cctcggacca acactttggg ccctactctc ttcaatcctc ataaaaaaca tgaagcgcca 7620 cggtcacgga gtcaacctaa ggagtgctct ctctctatcg ctggtcagta tagtttgctt 7680 cgcatttgtg gacgacaccg acctagcaat aacgggaaaa gaccggctga caacaggaga 7740 agaagtaata gaagagttcc aaccagcttt agaccgatgg gcccgcagcc ttatcgtctc 7800 aggaggcgca ctttgctccg aaaaatcatt ttgctacctt attgacttcc aatggacggg 7860 tacagactgg gagtaccgat caaaggacga catgccaggt tctttcactc tgatagacaa 7920 acacggtaca agaagagagt taaaacgaat gaacgcggaa gaagccgaaa aaaccctcgg 7980 agtatacctt gcgatggatg gcaacgacgg acgacaattt cgccatttac atgaagaggc 8040 agtcaaattt ggagaccaaa tacgatcaag caagtgcgat aataacacag ccttctacac 8100 ctatacaaac tgtttcttga aaagtatgga atattgcatg ccaaccacgg acttcacaga 8160 gacacaatgg aacgacattc taagaccagc cctacgaaaa gctttgcaaa gatcaggcat 8220 cgcagcaaat ttccctcgcg aagttctata cagccctgat ctataccaag gcctaaacat 8280 ctacaacccg agattctgtg aaggcattaa aaaaatatcc accctcattc aagaatcagt 8340 taaccaatca tcaacgggag acctcatcag gttaacagca gaaggactcc gtctagaact 8400 aggaatccct ttaatagccg gaagaatcga ctggaacata gttcaagcat acacaacaaa 8460 agtctggtac cggggagtac tcaactttgc ctcagaacac aacatagaat tcatagaaga 8520 ttatccacaa atcccacttc taagacaaaa tgaccaatat atcatgcaag gattcataaa 8580 agctggctac agaaacaaag aactccaaat actaaactac atgagaatgt ccctaagagc 8640 catatcagtg gcagacataa catcggtgtc aggtcttaca atcaaccacc ttgcatggga 8700 actccgcgaa ggcaacctac tacgagagca ttacgactgg ccacgcgacc caccatcatt 8760 cacaaaaaag cagaaagact tctggaaaaa agcgttagga aataccttca ttcgacctca 8820 atctatcctc gaacatagga tattggccca acctgtctcg acctggcagt cactatcagc 8880 attggatgat tggccctact tctacaaccc aggtgaagat cgcctgttca aaaaacacgg 8940 caactcatgg aaaatctaca gtcatcacag cggaagagta agaaatagaa aatacaggtt 9000 caacaaccaa acctgcgaat cattacccac atcgaccaac ctacttgcat cagtcagcct 9060 acgccatacc ccagccaaca atccaaatcc agtcgtacta gcgaaggaat gcacctccga 9120 atggcattac gaagaaccag ataccgacct cgcctcttac gatccgacag aaggtccatt 9180 cgcctgcata caagacgcat ttgactcttc cagggcctcc gaaaaaatac ttctcgacaa 9240 agtcgaactg cctgcagacg actgccaagc aatcgcgaca ggaatctcac aaggcacagc 9300 tagagccatc agcgacggat cttacgaccc aaacactctc aaaggcactt cagctcttat 9360 aattgtggca gacaaggacg acaaacaacc actcgaggct gccaactggg tccccggcct 9420 agcatccgac caatcagcgt accgaagcga actcgcagga gttgcaggaa ttcttgcagc 9480 agttgcaatc atagtccaac attatgagct aactaccgga tcaataacaa tcgccctaga 9540 tggcgaatca gcattagatg tttcagcggc agccacaatc atgaatatag gccaagcaga 9600 cttcgacctc gtccaagaaa tcagaacgcg aatctccatc cttccaataa cagtaaactg 9660 gaaatgggtt gaaggccacc aagacagaaa aggaaaatca atggactggt gggcaagaaa 9720 gaatactata gtggacggca aggcaaaaag ctatctaaaa caatgcaaaa gggagaaacg 9780 agtacatcgt ccagtgcgcc tgctctacga aaaatgggcg gtatacgtaa acggtatcaa 9840 gatatcaaaa atagacacag aacctctcta cgccaccctg tttgcccctc gatccttgga 9900 atactggaaa aaacaccacg acatcaaagt agatccacaa cacgacaccg attgggaagc 9960 aagccaacaa gcaataaaga aacttcctca agggcaaaaa cgatggttat ccaaacaagc 10020 ttcaggttgc ataggagtag gccacgtgtt aaaaataaga aaatggcaaa accactcccg 10080 ctgccctctc tgcaacaaag acgaggaaaa aacgtcacac gttcttacat gccaagataa 10140 agattcgaaa gccaacttca agaaaaacct cgataccatt ctgaaaccaa ccctagattc 10200 caccaataca gcaccgtcac tgtcaaaagc aatcttagaa atcctacaga tatggagaca 10260 agataagaaa gtcaaccctt ccgattttac actaaatttt ggcatacgag cagccatcaa 10320 agaccagaac aacggattgg gatggaccaa ctttgcacta ggcagatgga gtcgtaaatg 10380 gcaagtttcc cagcaacaat tctacgacag aataagatcc aagaaaaaat caaagcgatg 10440 ggccgcagct atcattcaca aattactctt aacagcatgg gaccaatggg atttcagaaa 10500 caaaatagca catagcgacg agggaccagg agcaattgcc cttcggcaaa gactagatgc 10560 agaaatgcta gaagaaacgc gcagcgataa tcgacaaatt ctacgccaag atacattcct 10620 ctttacaaaa tggacgtaca ccgaacttca agcccttcca agccagcaaa aacaacaatg 10680 gctaagatca gtcttccaag caagaaaagc aattaactat aacgcaccta ccgtcccata 10740 tatatcagcg atgagcgtgg caatgcaaaa ctatttagac tagcatgacg gcctcgacct 10800 gctcgttacc tgccggctgc caacagacac ccaataagca acacaggaag agcgcgcgcc 10860 aacgttcacc gcaccaaaaa ctaagttact gcattaaaaa aaaagaggag aaacgtcttt 10920 cgaaactatt tcgaaactat cacacattcc gtttcgaaac catggagttt acatcaaaac 10980 caacacaggc aaaccagtac acaggtctcc aaacaacctc cccagcaaaa tacacagtca 11040 tggcaacgtc aactatccct agggatctct cacaatcctc agttcagcaa ttacaaaagc 11100 aactttcaca ttcgccttac cgatcctatt ttcgataaca tcatcaatcc cgacatacca 11160 acaatggcga aaataacgaa accaaatgca ttatggaaca ccattaaacc caccactgca 11220 gagcttctca agaacgacga agcaatcaag caactaacag ccgagttagc cacactgaaa 11280 agaaccgatg tcgccctaga cgaagaaatg agagatatct gtcaaaaatt ttgggacaaa 11340 accaatgaag taaagaacct acacacaaac gccacctccc acttcaactc cttgcaggga 11400 caaatcactg aatcaacatc taccatcatg accatttacg aggccatcac cgacactccc 11460 tcaactctga aggcactcca agaccaacaa aaggcagcca atacagcgca caagacagcc 11520 gaaggagcaa ctatcagtag acacgagcat ctcaaaagag taagagaagc aatagactca 11580 tacagacaag gagtcgatgc agcagaagga ttacatgcag atgcaaaaat caaaattaac 11640 gaacttcagg aaacacttca ggcgtcacag tctgccaccg aggaaattag caagtctatc 11700 gaaggccatt tgccatcatt gaagaattta gataccaaat acacaaaagt aaaaaatgcg 11760 caagaggcag ccaccttaga aacttccaac aaggataacg agctcacaga tgcaacggag 11820 acagcgctag atgtgttagc ggatgagata cttatcagcg atggacgcag agttatcaaa 11880 agagtcctgc tcaactcatt aggtaaaaaa tttggattca agaagtggac atgcagcgac 11940 caaaagtata acagacaact gtggcctcaa gtagaaggca tcctatgcat cctcgtcgac 12000 ctcccacttt tcttctcact agccgaactc caaacactct taggatacag cccacacaac 12060 aacaacgtca agttggcttt gaagaaaatg actgaagaag aaatgctcat cgtcgaagaa 12120 gacaaatcgc agacaaaaaa ttactacctt ggagaaacgg cacgggccat tctggatcgc 12180 aaaatcatcc cagacattaa tgtagctcga ccagcagacc tcgcagcgac catccaagaa 12240 catttcgacg ccggtcatct acaagccaac aaatataaaa aaagaaaggc aaagacagcc 12300 acaccagaac atactaccga tacaccattc gcaacgccct ccccaaagaa gaaacgcaag 12360 tttactctcg aagaagaagc aacaaccgac tcggaaaaga aaggcagtac ctcagataac 12420 gccttggaaa tttcatcgga agaagacacg tcggaagaag aaacgtcgga ttcagacaac 12480 gataagtcag caaacgaagt accacaagac cacgctgaag tataagttgc ttaattccaa 12540 aatcaccttc agttgaccac ccctactacc cgatcaggca gccacaccta atctaccaaa 12600 catcaacata accatacaat tctacaaaca tacaattcta taaacacaag acatcaccga 12660 acaggtgcca taccctgctc tattacaacc atatcaccac caacgagttc tattttcaaa 12720 tcaagtacaa gaggaaccgg cctactacta caattgaaga ggtgttgata ctattacata 12780 tcatttacaa tcaccaccat cgaatcacca tacatataca catacataca tatacacacc 12840 atcactgtcg ttctaccgaa gttgtattat tcttcactta tcggaggcga gtttaaagac 12900 gttatagtct gctatacata tctacaaaaa ggcaattagc tagattaata aaatatactt 12960 atatgcctta tatatattta tgagtatctc atcatatata tatacatata tttatactac 13020 atagtaaatc aatgagttaa attaaa 13046 // ID Gypsy13-LTR_VC repbase; DNA; PLN; 395 BP. XX AC scaffold_52; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy13-VC; KW Gypsy13-I_VC; Gypsy13-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-395 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 141-141 (2008). XX DR Genome; scaffold_52; Positions 581139 581533. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 395 BP; 91 A; 97 C; 96 G; 111 T; 0 other; tgtggcctat ggttggtcaa tctaaccagt atggttatgt aattaacgaa tcccagcata 60 tcccagttgg atatcgaacg gacgttccaa cgttcgaggc tgagatcaac tgacaggttg 120 tcggttgtgt aaagtgtgac agtcgtcagt catacagtcg cgtcgatcga cctatcctat 180 caaggaaggt taagagaagt cccgcagggc tacggtcacc agttaccgat cgtatataat 240 ccggtgcgga tgcctggtag gcatgagtag tctagcgctg ctattactac tggtgtcgtg 300 gtcacaccca cctcgcacct ttaccaccta ttgtggtctg ttttccgctg ctacatttcg 360 ttgtattctg gtacgtctca accagactca ctaca 395 // ID HORE1_EA repbase; DNA; PLN; 428 BP. XX AC AB033241; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Equisetum arvense gypsy-type retrotransposon HORE1_EA, partial DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; HORE1_EA; retrotransposon; partial sequence; KW reverse transcriptase. XX OS Equisetum arvense OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Moniliformopses; Equisetopsida; Equisetales; Equisetaceae; OC Equisetum. XX RN [1] RP 1-428 RA Kumekawa N., Ohtsubo E. and Ohtsubo H.; RT "Identification and phylogenetic analysis of gypsy-type RT retrotransposons in the plant kingdom."; RL Genes Genet. Syst 74(6), 299-307 (1999). XX DR Genbank; AB033241; Positions 1 428. XX SQ Sequence 428 BP; 128 A; 76 C; 91 G; 133 T; 0 other; agcggatgtg cgtggattat cacaaattga atgtagctac aatggctaat ccatttccca 60 ttcacgttat ggatgcaatc ctcgacacag ttacaagtca tgaaatctac taattcctgg 120 atggattcaa tgggtataac caagtcttga taacaacata agacagggac aatacttcgt 180 ttgtcataga atgtggggca tttgctttga ataagatgac ttttggcctt aaaaattccc 240 ctaccacatt ccggaggatg gtgtaggaga tcttctatga ctatcttaca atgtttatgc 300 gtgtcttttt agaggacttc aacgtatttt ggcacaaaaa taagcatgtg gagaaattac 360 aactatgtct gcaatgatgt catgaaacac gacttagttt gaatcctgct aaatgtgtgt 420 tcggggtg 428 // ID Gypsy-3_PR-LTR repbase; DNA; PLN; 404 BP. XX AC AAQX01000350; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PR_; KW Gypsy-3_PR-I; Gypsy-3_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-404 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000350; Positions 13287 13690. XX SQ Sequence 404 BP; 123 A; 95 C; 74 G; 112 T; 0 other; tgtagcgggg ctacacattc ggttcacctc ctaccttagt gcaacatgca ctaaggaata 60 cattcaggtg accaccacag ggtggtccac attcatagca aaaggcatat gactggtaga 120 aagtaacacc tttctaccaa tgagagtcat tcaatagata ggggttctgc catccatcca 180 atggcagaac ctctcattag aaatatcagt tttaggagga aaccccattt tacaatcaat 240 acagttctca tttaccacca aagctttcgt tcggttcatt tatctaggtt taagtatact 300 tgtggataca agtatactga acttaagtaa attactccta cgcttcctcc tacacgtgcg 360 cacacgtgta agcttaagta gtgagtctaa gcagacccat taca 404 // ID Gypsy-27_PSo-I repbase; DNA; PLN; 13186 BP. XX AC AAQY01000828; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 04-APR-2011 (Rel. 16.02, Last updated, Version 2) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-27_PSo_; KW Gypsy-27_PSo-LTR; Gypsy-27_PSo-I. XX NM Gypsy-27_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-13186 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000828; Positions 13740 555. XX CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 137..2563 FT /product="Gypsy-27_PSo-I_1p" FT /translation="MAKRVKSAVPATPAKSSGTRNETSVRSGSSFSTPTTD FT RMESIDERSVSYDTAIDSSDAKEDDEDDDWDVRTAMSETSEAAVGSTGRSG FT GSRSITRDLSDTFKDMPGPEPAYDADDGATEGFKPSVTVGGATPKPVGTRP FT PLNGDTPAANKVLGRCLDLMKTKSEWMQLFSPKQVRQTIWMDLGGALATPI FT NSTSTRQVAQNTVDLLRAMGCEPQILPTEAALASWTPTAAATALTKWRKKL FT RNAFGVADVSSRGPTMLRSTSEAVDPLTVPLPATPRKGATDDGVFATKGEA FT SPYMQDSHMVTPRSTDRCERLARENEASFATPGTRGATGRRSGRRYDLQDD FT SSDSDDDLRSDYYEGDLPSEWTRQVRELSATDNQSSTPKLEIATHLPLANI FT KPFYGTRDKSEHSMQWLRTFIYEMKGTHAPPNEWCMRFELKLRDGALHWCR FT QLPRKTRRTWKLLSEAFIKYYCSKFSQSAKARYYSAKREDKEHVCDYLNRL FT NGYARNAGVQFENGGRDAKDHVDHYLVTCDDRNLEDRLCHVRVKSIHDLED FT MINDILRHRDRKSNRESSFRHSRSQDDGRRRDARSNEDSRGGYRRERRYHD FT EDRRERRRRDNRRRNDRSEDDRRRDRRDGSPYQSRVTLVDALADVMAEWNV FT GGSVGARNEAPYAPRRDAEANEDYFEDERQYSDDQRSDEDSDADYDSDGST FT GHVAAANDAERRAAAEGTFARSDNRRFRNGGGPSNRERDGRRQYGPCAACG FT SPSHSVHFCYRRCKLCKQVHDAGRCEALHELTKLLKSKVDKKDLSLELQSL FT VYGSHLN" FT CDS 3703..8244 FT /product="Gypsy-27_PSo-I_2p" FT /translation="LAEQPPAVERRTYPTPRKILPRPPDAPPWPEGRQQAP FT LDDEYSSPDVHGYDDDPKVSEGSVDVARADKTDVDRAGGLNDGSDDEASAS FT YDSDVPGDSPPSRAGCLPVNPNSGADSTGQGATYASVEASEASDELSDGDS FT VTNDGSEDDRDVVAVAETTTWDVLPTGTAASSLEPEETSAAVCSSEVDWGE FT HDPGPNDVPTEAGTSTADADTEFHDSDLSAIDDPEQLLEATYISVMHAMVA FT EGSVEGDDTVNDVSEHVANEIELTDYAQELAFLPDLTEASETTLDYSGQNV FT QSDELSVKQQTDLVDVLKSHEKILIASGNALPPPAYGVVCDINIQGHAPIK FT QKARRTPLRFLGKLYELVKGLLKAGLISFSDSPWASPIVIVLEKNGVDIRL FT CIDYKLVNAITEIMEYAMPLVDDLLTDMEAYLWFCSLDAASGFWAIMMTER FT ARKISAFVCALGHFEWLRMPFGLKNAPMIYQRMIDNALWGFVQPTGEWFKF FT SERMRLAEEHDKEAHAGVNEASTGTAKPFRTKFEADRDNSLGKGAVAELVN FT SPIANMFANGEPADSSLTPVFSRRSFVDDICFGAETFESCLATLGRLLARF FT EECRISISITKSIFVQSKVDFLSHEVSAEGIRPDDKMLAGVTEFPFPSTRK FT GMQSFLGALNYYSRFIQDFVVYGAVLYQLKDEDFQPGGDLTAAKHSFAMLQ FT QKVSAAPILRHFDREKEVHVMLFANEWALSSTLMQEHEGKLHPVRFCGRVL FT KDAEMNYHPAEKEVLALLLILKVCYTQLVGQRIRVYTRFSTLDWVHKSKTL FT FGRATQFAVLLSPWHLLVERVKETDCSFAQLLQAGLTNFVDLDKSLALVTP FT RTRGSPTTRLDPHLLYARLPRSYRGFVMSFDGSAKTEKNGGYGSCSWILWK FT LPEWTVVLVASAYLENTTVNLAEYTGMNNGVSAALQHGADDLVVVGDSRLA FT IQQALGVIACRKESLLQQLSHHQELTAKLRSVKYLHVVREFNAAADSLASE FT TLECKESTVVSSDDRVLELMKLNRIAEVIYEAADGCVVEDIPSANTVWAVV FT VSAKPRSKNFFDFVRRETDRRRQNETEPGRVAVMTRRQTRAKEKHVRFADE FT VSVTDQGDAFHRVDANGVPNESQNEAEASPLRAETSPAPPNAEDIDPLVVQ FT EERRRRIASAQDEELRWSNLKAVLRGDDAKIGYRAARDAWKMADQFVLSED FT DVLYYTRTSRRSSDGEQAELKMRLVVPTTMIQEVLQSCHDSLEGGHQGITR FT RLHRAARDYYWIGQYADVVKLVKACPDCSTSKSRPQFRGYSPGNILAERSF FT QLVSMDFVIPLPKSRRGNTALLLFQCSFTGFVMGKAMSDTTALFVAQAFEE FT CVYRRFGAPSLIRHDRDPRFMSEVFHAFAEMMQSRSRATLIYRPQANGQQE FT RSVKTIMQSVRVYAEDPLQQDWDEIAERLIFAINNSRDTTRKETPFYLVHG FT WDAQSTLKAMSSSLKRGFGCQTDALAWRREVNRQQETALRMAKEYQAAE" XX SQ Sequence 13186 BP; 3051 A; 3600 C; 4118 G; 2417 T; 0 other; actggtgccg cgacccggga ttggtgtgac cttctgtgtg tcttggttgt tgtaggtctt 60 tacccccaac gagcgaagag gagaagaaga agaagaagag aagcgaagaa gaagaagaag 120 aagaagaaga gagaagatgg cgaagagagt caagtcagcg gtaccagcaa cgccggccaa 180 gtcgagtgga acgcgcaacg agacttcggt gcgctccgga agctcattct cgaccccaac 240 gacggatcgg atggagtcga ttgacgagcg ttcggtgagc tacgacacgg cgattgattc 300 ctcggacgcc aaagaagatg acgaagatga tgactgggat gtccggacag cgatgtccga 360 gacttcggaa gctgcggttg ggtcgacagg tcgcagtgga ggatcaaggt cgattacccg 420 cgacctctcc gacacgttca aggacatgcc gggccccgag cccgcctacg acgcggatga 480 cggcgccacc gagggcttca aaccctcggt gacggtagga ggggcaaccc ccaagccggt 540 tggcactcgt cctcccctca acggggatac cccggcggcc aacaaggtcc taggccggtg 600 cctagacctg atgaagacca agagcgaatg gatgcagttg ttctccccga agcaagtccg 660 ccagaccatc tggatggacc tcggaggggc gttggctacg ccgatcaact caacgagcac 720 tcggcaagtt gcgcagaata ctgtggacct cctgcgagct atggggtgcg aaccccagat 780 cctccccacg gaggctgcgc tcgcgagttg gacgccgacc gccgctgcca cggcgttaac 840 caagtggagg aagaagctgc gtaatgcctt tggagtggcg gacgtcagtt cgcgagggcc 900 aacgatgctt cgttcgacct cggaggcagt agacccgttg acggtcccgc taccagcgac 960 ccctcggaag ggagccactg atgacggtgt ctttgcaact aagggcgaag cctcgccgta 1020 catgcaagac tcgcacatgg taacaccacg atctacggac cgttgtgaac gtctggctag 1080 ggagaacgag gcttcattcg ccacgcctgg cacgcgcgga gcgaccggtc gtcggtccgg 1140 ccgacgttac gacctccaag atgattcgtc ggacagcgac gacgacctca ggtccgacta 1200 ctacgaaggg gacctaccga gcgaatggac acgtcaggtg cgcgagctaa gcgcgaccga 1260 caaccagagc tcaaccccaa agctcgagat cgccacgcat ttgcctctcg ccaacatcaa 1320 gccgttctac ggaacgcgcg acaagagcga gcactccatg cagtggctcc gaacgttcat 1380 ctatgagatg aagggaacgc atgcaccacc caacgagtgg tgtatgcggt tcgaacttaa 1440 gctcagggat ggagccctgc actggtgtcg ccagctccca cgcaagacaa gacgcacgtg 1500 gaagttgctg agcgaggcgt tcatcaagta ctattgctcg aagttttccc agtctgcgaa 1560 ggctcggtac tactcggcca agcgggaaga caaggaacac gtttgtgact acctcaaccg 1620 gctcaacggc tacgctcgca acgccggtgt gcaatttgaa aacggtggtc gtgacgcgaa 1680 ggaccacgtg gaccactact tggtcacgtg tgacgaccga aacttagaag accgtctgtg 1740 ccacgtccgg gtcaagagca tccatgacct cgaagacatg atcaacgaca tcctgcgtca 1800 ccgtgaccgc aaatcgaacc gagaatcgtc gttccgccac tctcggagtc aagatgatgg 1860 acgtcgacgc gatgcgaggt cgaacgagga ttctcgtggt ggctaccgcc gcgaacgacg 1920 ctaccacgac gaagaccgtc gcgaacgacg tcgccgtgac aaccgccgcc gcaacgaccg 1980 cagtgaagac gaccgtcgcc gtgaccgacg cgatggatcg ccgtaccagt cccgagtcac 2040 tttggttgac gcgctggccg atgtgatggc ggaatggaac gtcggaggct cggtcggtgc 2100 acgcaacgag gctccatacg ctccccgacg tgatgctgag gcgaacgagg attacttcga 2160 ggatgagcgc caatactcgg acgaccaacg ctcggacgag gattcagacg ctgattacga 2220 ctcggatggg tctaccggac atgtcgctgc tgctaacgat gctgagcgca gggccgcagc 2280 cgaaggaacg ttcgctcggt ctgataaccg acgcttcagg aacggaggag gcccgtccaa 2340 ccgtgaacga gatggtcgac gccagtatgg gccgtgtgcc gcgtgcggaa gcccgtccca 2400 ctcggtgcac ttctgctacc ggcggtgcaa actgtgcaaa caggtgcacg acgctgggag 2460 gtgtgaagca ctccacgagc tcaccaagct cctgaagtcc aaggtcgaca agaaggatct 2520 gtcattagag ctgcaaagcc tggtgtatgg aagccattta aactaggcag cccgccaact 2580 gaaactgggt tggtcccaat cgggctgcca cagttagctg agcctgctgt tgatgcggac 2640 tatctgttcg cgttcacggg cgaaagcaaa cggcctgacg acctgaagaa caatgaacgt 2700 gtgaaaccga cggaaaatgg agagaaccgg gacgcaagtc tcgttgcgat tggtattgat 2760 gaagatgatg atgatgaacg tgatagacac ccgaccaagg ctttgatcac aagtctagcc 2820 cagataaggg ggccacctcg gaacctcgtt cgggcggtga aattactgcc cggtgagaga 2880 ctggggtggt ggtcgtccca acgatacgac aagaggaagc gaatgagggc tttggtcaat 2940 ggcgcagtgg acgacgcgcg aacgaggata ctccttgaca ctggagcgaa tgttagcgtg 3000 atttctgcca gcttcgccaa gcggctacgt gtgcgagaag tccgggatta cggacgaagt 3060 ctcgaagtcc gcggcatcaa cccaggggtg atggagaccc ggcgacgggc gctcgtcaag 3120 atcaccctcg gatgggagca ggtctacgaa tttgaaatgt ggataatgaa tcacagtgcc 3180 ggggtggatg tggtccttgg gatggacttc atgatcccgg ctggaatccg gctggatcta 3240 tttcatggca ccgcacgcct tccggacgag gtcatggtac cactgctaaa gtcgcagagt 3300 gctgaagatg acgaacctta cggcacgtag ccttcgtgtg agccgatcga ggatttgtac 3360 gtacccggtc gcgagtggcg agagtttcga ctgccgcgcc agcggctacc tcgttcggag 3420 tacgatgtgt gggtacgacg cacaggcaag ctcgtgccga ccgtaacgag gtttcgacgg 3480 gggcagccga cgtggatacg gctcaccaat attacgacca cagcggaaca gtgcgccaag 3540 catgactccg tggtgctgtg ggtaccgcat ggtgaactac cgcgagagac cggctacgcg 3600 aggttgaatt ctaacaagta caaagagtgg caggtgttgg cctattcaac gagtcgtgat 3660 gagactctgc aaggacgaga acgtcgtctc tacgagcaat agttggctga acagccgcct 3720 gcggtcgagc gccgaactta cccgacgccg cgaaagatcc tgccgaggcc accggatgca 3780 ccgccatggc cagaaggccg tcaacaagct ccgttggatg atgagtactc gtcacccgat 3840 gtacatggct acgacgacga ccccaaggtc agtgaaggct cggtcgatgt cgctcgagct 3900 gataaaaccg atgtggatcg tgctggtggg ttgaacgatg gttcggacga cgaggccagc 3960 gcgtcgtatg actcggacgt acccggagac tcgccgccta gccgagcggg ttgcctgccc 4020 gtgaatccga acagtggtgc tgactccacc ggccagggag cgacatacgc ctcggttgag 4080 gcatcggaag ccagtgatga gctgagtgat ggtgacagcg tgacgaacga cggttcggag 4140 gatgaccgcg acgtggtagc agtggccgag acaactacat gggatgtcct gccaacaggg 4200 accgctgcgt ccagcctgga gccagaggaa acgtcggctg cggtgtgtag tagcgaagtc 4260 gactggggtg aacacgaccc agggcctaac gacgttccta ctgaagccgg aacctccacc 4320 gctgacgccg acactgaatt ccatgattcc gatctaagtg cgatcgacga ccccgagcag 4380 ctactggagg cgacctatat ctcggtcatg catgccatgg ttgcagaagg gtctgtcgaa 4440 ggtgatgaca ccgtgaacga cgtttcggag cacgtcgcga acgagattga gcttaccgac 4500 tacgcgcaag agctggcgtt cttgccggac ctaaccgaag cgtcagagac gacactggac 4560 tactcggggc aaaacgtcca gagtgacgaa ctcagcgtga agcagcagac ggacctggtc 4620 gatgtgctta agagccacga gaagatcttg attgcgagcg gcaacgccct gccgcctcca 4680 gcctacggtg tcgtgtgtga catcaatata caggggcacg cgccaatcaa gcagaaggct 4740 cggcggaccc cgcttcgctt cctcggtaag ctgtacgaat tggtgaaggg tctgttgaag 4800 gccgggctta tctccttctc agacagccca tgggcgtcgc caatcgtcat cgtcctggag 4860 aagaatgggg tggatatccg cctgtgtatc gactacaaac tcgttaatgc gatcaccgag 4920 attatggagt acgccatgcc cttggtggat gacttgctga cggacatgga ggcgtacttg 4980 tggttttgct cgcttgacgc cgctagcggc ttctgggcca ttatgatgac cgaacgagct 5040 cggaagatct ctgctttcgt ctgcgcactg gggcacttcg aatggttgcg tatgcctttc 5100 ggcctgaaga acgcaccgat gatctatcaa cgcatgattg acaacgcgct ttggggcttc 5160 gtccaaccga cgggagaatg gtttaaattc tcggagcgca tgcgtctagc tgaagaacat 5220 gacaaggaag ctcatgctgg ggtgaacgag gcttcgactg gtacggcaaa gccattccgg 5280 accaagttcg aggccgaccg agacaactcg cttggtaagg gagctgtagc cgaactggtc 5340 aacagcccta tcgccaacat gttcgccaac ggggagcccg ctgactcctc gttgacacca 5400 gtattcagtc gccggtcatt cgtggatgat atctgtttcg gtgccgagac tttcgagtcg 5460 tgcttggcga cgctaggccg attgctggca cggtttgaag agtgccgtat tagtatcagc 5520 atcacgaaga gcatctttgt gcagtccaag gtagacttcc tgtcccacga agtctcagca 5580 gaaggtatcc gaccggacga taagatgctg gctggggtga ccgagtttcc gttcccgtca 5640 acgaggaaag gaatgcagtc cttccttggg gcactgaact attacagtcg cttcatccaa 5700 gacttcgtgg tctatggagc agtgctgtac cagcttaagg acgaggactt ccagcccggg 5760 ggtgacctca ccgcggccaa gcacagcttc gcgatgctcc aacagaaggt ttcggcagca 5820 ccgatactac gacacttcga ccgggagaag gaggtgcatg tcatgttgtt cgccaacgag 5880 tgggctctaa gttccacgtt gatgcaagag cacgagggca aactacaccc cgttcgcttc 5940 tgcggacgtg ttttgaagga tgctgagatg aattatcacc cggccgagaa agaggtcctc 6000 gcgcttctgc tgatactgaa ggtgtgttat actcaactcg ttggacagcg aatccgggtc 6060 tacactcggt tttcgacact cgactgggtc cacaagtcca agacattgtt cggtcgggct 6120 acccagttcg ccgtcttgct gtcgccgtgg cacctgttgg tcgaacgagt caaagaaacc 6180 gactgttcgt ttgctcagct acttcaagcc ggcttgacga acttcgttga cttggataag 6240 tcactggcgt tggtcacacc ccggacacga gggtcaccaa ctactcgttt ggacccgcat 6300 ctgctctacg cacgcctacc gcggtcctac cgaggcttcg ttatgtcgtt tgacgggtct 6360 gcgaagaccg agaagaacgg tggatacggc agctgctcgt ggatactatg gaagctacca 6420 gagtggacag tagtgcttgt tgcgagcgct tacctcgaga acaccacggt taacctcgct 6480 gagtacaccg ggatgaacaa cggcgtctct gctgcattac agcatggagc cgacgatcta 6540 gttgtcgttg gcgactcgag gctcgcgatc cagcaagccc taggggtgat agcctgtcgg 6600 aaggagtcat tgctgcaaca actcagccac caccaagaac tcacggccaa gcttcggtcg 6660 gtgaagtacc tgcatgtggt gagagagttt aacgctgcgg ccgactctct ggcaagcgag 6720 actctcgagt gcaaggagtc tacggtggta tcgtcggacg accgagtatt agagctgatg 6780 aagctgaacc gtatcgctga agtcatctac gaggctgctg acggctgcgt cgtcgaggac 6840 ataccctcgg ccaacacagt atgggccgtg gtagtttctg ccaaacctcg tagcaagaat 6900 tttttcgatt ttgtgcgaag agaaaccgac cgcagacggc agaacgagac tgaacccgga 6960 cgcgtagctg tgatgaccag acgtcaaacg agagcaaagg agaaacacgt ccggtttgca 7020 gatgaagtct cggtcaccga tcagggagac gcatttcacc gagtagatgc caatggtgtg 7080 ccgaacgagt ctcagaatga agcagaagct tcaccgctgc gtgccgagac gtcaccagcc 7140 ccaccgaacg cagaagacat tgacccgctg gtagtacagg aagaacgccg aaggagaatc 7200 gcctccgctc aagatgaaga gttacggtgg tcgaatctga aggcagtgct ccggggagat 7260 gatgcgaaga ttggatacag agcagcacga gatgcatgga aaatggcgga ccaatttgtg 7320 ttgagcgagg acgatgtgct atattacaca agaacgagcc gtcgttcaag tgacggcgag 7380 caagccgagt tgaagatgag actcgtggtg cccacaacaa tgatccaaga ggtcctgcaa 7440 agctgtcatg actcacttga aggcggtcat caaggtatta cccgtaggct acatcgagcg 7500 gcgagagact attactggat cggccagtat gccgatgtgg tgaaactcgt taaggcgtgc 7560 cctgattgca gtacaagtaa gagccgacct cagttccgcg ggtactcgcc agggaacatt 7620 ctagccgaga ggtccttcca actagtctct atggacttcg tgataccgct accgaagagt 7680 cgccgtggca acacggctct cctgctgttc caatgctcgt tcacgggatt cgtgatgggc 7740 aaagccatgt ctgacactac cgccttattc gttgcgcaag cttttgagga gtgtgtctac 7800 cgacgttttg gagcaccgtc cttgatccgt catgaccgag atcctcgatt tatgagcgag 7860 gtcttccacg ccttcgcgga aatgatgcag tctcggtcga gagcgaccct gatctaccgc 7920 ccgcaggcca acggccagca ggagagatcg gtgaagacga tcatgcagtc agtccgcgta 7980 tacgctgaag acccattgca gcaggattgg gacgagatcg ccgaaagact gatcttcgcc 8040 atcaataact cccgtgatac gacgaggaag gaaactccat tttacctcgt tcatgggtgg 8100 gatgcacagt cgacgctcaa ggcaatgtcc tcgtcactca aacgaggctt cggttgtcaa 8160 actgacgcgc tagcatggcg ccgagaggtc aaccgacagc aggaaacggc cctgaggatg 8220 gccaaggagt accaagccgc ggaataggct cggagagctg aagagcacaa tgcatcactt 8280 ggaaggaagg agaaggagct acggcaggcg tcggcgagaa tagaacctcg gtcgaccgag 8340 catcgagttc ccctgaccat ggtggagcta cagtgacgag aacgaggctt tctttgcagc 8400 ctgggagcag agtgtggctg tacatggaac gggttcgacc aggactgacc aagaaactag 8460 cccatcggtg gcacggaccg ttccgcgaga agaagaaggt cgacgagttt gcgtatgagt 8520 tggaattacc cgaccgaagt ggataccggt tctacctggt ggtgcatgtt tcacgactca 8580 agtcagtgga cgaattcgaa ggccgaccga gggttcgttt ggctcgtggg gtcaccgaag 8640 acactcgtct tgacttcgac gaggaactac tgcctgaaga cagttttgag ccggaccacc 8700 tggacggtga gtatgaagtc gaggctatcc tcgatgaccg gacaccgttg tcaacgagca 8760 ctcaccgggc cgtccgagag ttcaaggtga agtgggtcgg ctatgacgag ccgacatggg 8820 aaccagcgtc caatctctcg tgcggtggcc tcctgtacga ttacctacgc cggaagcgaa 8880 gcgaccgacg tttgcaaatg gtccaggtgg ccgacgagga gtaattctgc gccccaacga 8940 ggattgaact gctcgcgcgg gcaatccagc ccgcgatgtc agacgaacga ggctactgga 9000 gatgatgatt gaactgcctg cgagggctat ccagctcgca gtgacagacg aagaaagtta 9060 ctggaatctg catgttacgt gttaagtgaa cgagtcacga tggaatggag atatcggaat 9120 ggagccagga acaacggaag acgcaagcaa gcctcggtca aaccctcaac agacgaaaca 9180 agtgatgatg aagcaaatgg gagggcgacc gaggcttcgg acgcagtgat tgccatggaa 9240 gtagcacgaa caagtgcgct cgaattcgtg gttgagtatg gagttgatga tgaaatgggt 9300 atgcaagctg tcgacaccgg atatccgcag cagaccgggt gtacagttgt caaaattggg 9360 ctgtcatgcg aaaacatacc cgcaacggag ctagcgtaag tacgcacggt ctcccgcgaa 9420 tcaagtccgg tcttcaacga gcataagccc gatcttcttg cagggagaag agacgaagcc 9480 cggctgccgc agctacgaac caagcctcgt ttgaggcagc cacagcggtc gagggcagag 9540 aagaagctct gggaaccgcg accgagtatt gaatgcgatg tgcgttgacg cgagaaaaga 9600 ttacgaaatg gaacgaacaa catgacgtta ttttggattg ggatagcaca tgcagcgtca 9660 cctaaagcgc cacggacctc ggtcgacatt ggaaaagaac gtgaacgaaa cggtgaagct 9720 ggagcggggc ctaacgaggc taaatctcca tcacagcctg agccaacacg cccagacttg 9780 acccggcggc gctagaagct tcacccgact tctgcgtctc ctcatcgggg cttggagagc 9840 gagaacgacg agcgtttgcg aactcggcca cccatggaac gaccaccatc gaagtctaca 9900 gagaagattc gaccacgacc gacgacgcca cggtttcccg agtcgatccg ttggggacaa 9960 acaacgggac gtcgttgcaa ggggcgaaag ccgtgttgta ggggtggtct gccggccctt 10020 ggaaccgaca gttacgccac ggctcgcggg cattcacgtc cgccacctcg gaggcccagt 10080 cgtcggtagt ggggacccac tccatcacct cgaacgagta ttacaggtac gacggctcca 10140 gcaaaacctc ggtgcggtgc tgtggaggtt gtccgtcgta cgtaatggcc ccattccaca 10200 ccttgtggag catctggtct cgcaagcgat ctgcacgata actgcgctct cggtggtact 10260 tggaccacgc ttgtcgaagc gctaggactt gcacgttgcg ctgaccgagg gtgctggcga 10320 ggttgtcgat atacgccttg accgctttac ccctaatcca gtggcgacgc tcccacaagg 10380 cgaaaccaag gtcgcccctc ttggtggagt ggtaggagta cccctggaac tgccgccata 10440 ggcgaacgag aagagcccga ccagttgcac gacgggatat agccaccgag gatggaaaac 10500 ccgtcgtatc gatcaaacaa ggctcgtctg ggaaacgctg gcgcaacact tggaaggggt 10560 gagcaggatc cgtccacaag ccaaactcca cgattccatc cactgaactg ggggcgacca 10620 agtcgtcctc gaagacgagg gggacactgg cgttttggat gagatgccag cattccgacg 10680 ctccgggtgc cgtgaaacgc ggagggtagc aagaccactg agcttacgcg atccaggagc 10740 tacgtcggaa gcgtcaacca ctgctggggc aatcgacgca ggtccagccc tcggtgaagc 10800 tgtcaccgtt gctgttacca tcgcccgagc gtgaacagag gccgaccgag tgtggagtcg 10860 actcgggagt ggcacggtgg ccgcttgtga agctacagga accccggtcg cggcagccag 10920 aggagaagga gcctccgaag gagcgacagg ttgcgccacc gaggtttcct ctctttcgtc 10980 ggggccgaac atctccagga acaacgctgc gcggtcctcg gaagtctcgg actcatgagg 11040 cgactcaccg ctaggtgaac ggtctggcgg gccgccagag ccctcggtga ccccagcagc 11100 cgattctcga ggggcacggc cgacgccggc tgtaccagac gagactggcg aaggaatggt 11160 agtcgccgcc gaaggcgaaa cctcggatgg aacctcgatg acagtaccgg aaggcttggt 11220 agcagaacct tgaacaccct gagcgctggc cgacaccccc ggaatctcgc cgggctcaag 11280 gtcatcttgt gaagtgtcgc taggactcat accccctcca aactccacgt cagacgattc 11340 ctgctgctgg gctggggctg gcgagggagg cgaggcgcga cgggccagcc gaggatacaa 11400 ggggacgtct gagtgttcgt acgggagagg ctgagactcc aaccagcttg agcgagccgt 11460 cgttggacgc accatcgacc gaggaggcgg ggaaatctct cctgatgccg aacgaggact 11520 agatggcgcg gcggccgctg cagccctggc cctcaggtcg actgacggtc tgccgaagcg 11580 tttgtgagga ggagactggg atgccgtatt cccgacggaa gcagactcgg tttgccgacc 11640 ccgcttgcgc gatgacgacc ggggaaccag cagaagcgcc caccgaagca gcgaaagcgg 11700 acgtagcctc ggtggactca gccatcggca cgtcggtcgt cttggactcc tctccctcct 11760 ctgacgagga ttcgtcatgg cgtcaactct cgacagtgac cgtcggtggg gacagcccga 11820 gaagattcca atcaatctct gcggcggaga tgccggctga ggccagggcc aaggtgtcga 11880 cgtcgagtcc gtgtgcggcc gagtgccgac gaaggataga aatcgctcgc cgcaagctgt 11940 tgttctcgtc cgtcaacgct tgaatgcgtg cggggatgac gtttgctcgg tcgcggtcgg 12000 ccaactgctt ccgaagcctc tccaactgag tgttgtaggt aacgaggctt gcacttatac 12060 gctcgtggag ctgggtgttc cgacgtacag cagcggccga atcggcctca gcaacgagcg 12120 tccgcttctc caacgactga gtgacgtcag cgtggtgagc gatggccgcg ttcgcttgca 12180 tcaactgagc gctggcgttg ctgagctgga cgcgcatgtc ctggacgagg tccagagctt 12240 ggtcgcactc ggagttggcc gagacgagga agtagtccga cttggtccgc aggttcatct 12300 cttcagcgag tttatctttg gcgtcggaga gctctgcctg cagccggtcg ttctcgcggc 12360 ggagggccac cagttcatca gccttcgcaa gagggagacg cggaggagca acggcggcag 12420 ccagcacctc accgacgtta gtagcagctt gcaggctgtg gtcgagagca gcgttgactc 12480 gagctggagg tgaacgggca acatccacga cgagacgagc gagttccagc atctgctgct 12540 cgcccaagac gaccgctgtc ggaggaacct cggccgggcc agcaccagca ccggcgcgac 12600 cccctacagc tgcctcgccc cccaccgacg ccccgcgagt ttccaacgtg accgaaggcg 12660 cgggagttgg cgacggtgga gcgctggcgc ttggcggcgg tgtcggcggc gagtcgggag 12720 cctcttcact gggaactgcc ggcgagggag tctcggtcgc cccagcagca gactcaggat 12780 tacttggagg agccggtgga gggtcaaccg aggtcccgga ggcggcagga atgagcgtag 12840 ggtcacctgc aggcgcggcc ggggctgggg gcacagcacc agcggcgata ggggcggggg 12900 cacgcgccga acgagcctgg cgcgccggac gacgacccga agtgtcggtg gcgacatcaa 12960 cagctccctg agatgatcaa gaaagagatg gagtcaacaa cgagggtccg aattacagtg 13020 aggagcagcg ggagcgatga acgtaccggt ccggagcact ggagagcccg aagagcagcg 13080 gcagccgcgt cggcgaatgc acgcgacgga ggagccatgg agtcgaagaa ctgaacacgc 13140 ctagacgctc accagcgtgg gaggctcgcg tcgaggcggg ggcagt 13186 // ID TPA5_I repbase; DNA; PLN; 4239 BP. XX AC AJ439553; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pichia angusta retrotransposon TPA5_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TPA5_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Pichia angusta OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia. XX RN [1] RP 1-4239 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439553; Positions 323 4561. XX SQ Sequence 4239 BP; 1149 A; 955 C; 758 G; 1377 T; 0 other; ggttatgagc cctgtcagcc acttccaatt agctaatcca ttttcagaaa catggaagct 60 tatgtcatcc aacaactatc tggagtggaa aagaagattt gaaaaatatc tacttttagc 120 aagtgaacat atttaccagt actataagac tggccaattg aatgttcaaa atgacgtcct 180 tattgatgag tccgttattc aagaatgtga tattgccttg aaagtgctcc tattgaaaac 240 tttgtctcaa aatgttattg acgtcctaga tcaaaatgtg atgtccggat ttgatcatat 300 aagagccatt gacaaaactt acgggaatat aagtttgcgt ggtttattac ttaggtacaa 360 gaaaatgaac aaagattccc cttctccttt agaacatatt agaaacttta ggatgctcgc 420 agaagatctg aaatttattg caccagattt agagactgtt gaagttctat tgtgcctctc 480 aacactgaac gatgattctc ttgaagataa gttgtttgtc aacaaactag aaagactatc 540 gttcatggat ttacaaaatg catatgctga aaatgagtta agaccttcat ttgcgtatac 600 aatcaatcaa tctaagcaaa tgcaagattc aaaatcttct aagaagaaaa agatcatatg 660 tactagatgt caaaaggaag gacacaagtc ttttgaatgt cgtgctcctg ctccagtctc 720 taagaagtca cttctaagtg atgaaactgg aaaagatgat gatacttatg gcgaaatctt 780 tgttgctgaa gcatttagaa ccatgggtga ggtatacaca gcgagaaact taccccttcc 840 tcatattgat gatgcttatt ggtttgactc gggagctact tgtcatattt ccaacaacag 900 aaaccatttc agcagttttg aaaaatatca tggttatctg caaggtttat cttcaggatg 960 tcaaattgaa ggaaaaggaa ctgtcctact atatcacaat ggtaaggata ttactttaac 1020 agatgtctat tatgttcctg aggccggaaa gaacttaatt gctttctgta aagtctttaa 1080 agcaggagga attcgcgttg atgaatcagg actatttgtc aacaataaac tgtttgctac 1140 ttatcaacca aatagactat tcaaatgcat attctctccc cagtactgtg cacaggctaa 1200 tctagttatg gactctcatt ctcatcaacg gtttggacat ccatctgaaa agacttctcg 1260 caaattgggt ttacctatct tgaaagaact ctgtgcaagc tgtcagtttg gacgaaacac 1320 tgcaacattt cccaaggttt cacgaacagt cgtcaaagct cctctagaac tactacatgt 1380 tgatgtgtgt ggcccattta acacaaaagg tacacaaaat gaacgatttt tcttaaccat 1440 tgtcgatcgt ttcactcata tggtggccgt ttacccatta caacataaat ctcaggtttc 1500 tcagctattg aaagagtata ttacttatgc tgaaaatcac tttcatcgtt tcccttataa 1560 ggtcatgcga gttcgaagtg ataatggcac tgaattctgc aataatcagt tactgacttt 1620 cttcaaacaa aaagggattc aacatgaact tactaatact tactccagct atcaaaatgg 1680 cgttgctgag cgtatgcatc ggactctcat tagtcgggtt cgaattctct tggctagctc 1740 tggttgtcct gacatgtttt ggcctcaggc actgaaattc gttgctctca ttatcaacca 1800 ggaaccttca tcctctattc atggggacat tcctcatatg cgctggtttg attctcaacc 1860 agattataca atgtatcatc cttttggatg tcaggcttat cctttaactc ccagtgttca 1920 tcggtcttcc aaactttctc cggtgtccac ttctagcatc tttatgggag tgagcgcccg 1980 ccgcaaagct tatatctttt atgatcctat tgctgacagt tttactgaat ctcaacatgc 2040 aacattttcc gactctcact ttccgttttt acaccaaact cgaaaatctg tgggtgttcc 2100 catttttgac ctatccgagt cctataggca gcaatcctct ggaattctgc cgtcattacc 2160 gaacccctct actgtgccaa tattgcctag aggtatatcc gatgtctcgt ctcgtccttt 2220 gtctcattct acttctgatc cggactatac tccctctgac tctatggact ataagtcttc 2280 tgattctatg gagctcgttc cacttgatca tattgaatct aatttggaat ctatttccga 2340 tcctactgtg gatatttctc ctgattattc ccctgcacca tctgtgccta tatcttctaa 2400 gttgattgac tatcccgttg aacgatctct tattccctac tcacaatcag cacatgatca 2460 ttctactgtt gttacttttg ctcctcgtcc tgagtgtcct tctgaaccct cccttcttcc 2520 tccaccaacc tccgcttcta tgaaccccga attgttaact cccgttattc ctgctgtgca 2580 tcctcgggat ccttctgaat ctgatgttgg acctgatcct ccccgctatc ctatgcggcg 2640 acttaatgcg gatgcctctc atgctcttct tgctgacgct gcctcagctg tctcttcttc 2700 caacgttcct acctcggtca ccgaggcctt aaactcatct gtttggtcta aggccatgca 2760 acaagaaatg gaggctcacc atctaaataa aacttggtcc ttggtccctc ttcctaaggg 2820 tcgacgtgct ttaggttgtc gttgggtttt cactgagaaa ctcccaagtc atcttcctaa 2880 agctcgtctt gtggttcaag gttttcgcca gatagagggt attgattata ctgaaacctt 2940 tagtccggtt gttcgttatg aaagtgtgcg cactcttctt gctcttgctg ctcaaaaaca 3000 tatggttatt catcagatgg atgtcactac ggcctttctt aatggtgatc tagctgagga 3060 gatttatatg actcagccca ttggctttgt tcatccgggt caggattctc ttgtttgtca 3120 tcttcagaag agtctatatg gtctgaagca ggcccccttg tgctggaatc tcaagattga 3180 ttctctacta gcctcttctg gtttccgcaa aattccatgt gagtttggtc tttatatctc 3240 gctcactcat cctttgatct atgttgctct ttatgtggat gatctcctca ttctctctac 3300 gtctcaggca cgtattactc ataccaaatc tcttctttct catcatttta ttatgaaaga 3360 tcttggcact gcaagccact ttcttggact agatatacat cagtctcttc cttctattgc 3420 tctctctgcg tccacttata ttcatcagat gctcgatgat tacaatcttt ctgcttgtaa 3480 tcctgtttcc actccttgtg atactcaatc ttgggtgctt tccgatgatc ctcctttatc 3540 caaccctact gaattccgca gcatggtagg gaagttgcta tttgctgcta acacagtaag 3600 gattgatatt gcatttgttg tctcaaaatt aagtcgtttc ttacaaaatc cacgcaaatc 3660 acatttagct aaagccagac atgtgatgcg atatttaaag ggcactgccg atttgggaat 3720 tgtttactcc aaagactccc atttcaaatt atccggattc tgcgactctg actggggaac 3780 tgatccgaat gatcggatct cagttacagg gtatgtcttt atcttagcag gtgctcccat 3840 tacttggaga tctaagaaac aaacaacagt ggcattatcg tcaacagaag cggaatatat 3900 ggctttaggc gatgctctca gagagctctt atggttaaaa caattacttg atcaacttga 3960 aatcaaatcc tctgaacctc cgacactcta ttgtgacaat accggagcat tatctttgat 4020 gaagcatcca gcatttcatc caagaacaaa acacattgat ataagacatc acttcatcag 4080 acaacatcta acctccaatg attttatctc aaaacatgta tcatcaggca tgaatctagc 4140 tgatccactt actaaagcat tagataagcc aaaatttgaa tctttgagac taaaatggaa 4200 atttgaaaaa ctttgacata gtatacgact atggtaggg 4239 // ID Gypsy3-PP_I repbase; DNA; PLN; 4724 BP. XX AC scaffold_94; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-PP; KW Gypsy3-PP_LTR; internal portion; Gypsy3-PP_I. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-4724 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 427-427 (2008). XX DR Genome; scaffold_94; Positions 1167187 1162464. XX CC Positions [1699-2154] - Reverse transcriptase CC Positions [3096-3569] - Integrase core CC 'GTAAT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS join(1582..3093,3096..3716) FT /product="Gypsy3-PP_I_1p" FT /translation="MAELKTYIDENLAKNFIRHSKSPAGAPILFIKKKDGS FT LRMCVDYRGLNKITIKNRYPLPLISGLLDQLNQAKIYTKIHLRGAYNLVRI FT KEGDEWKTAFRTKYGHFEYNVMPFGLMNALAAFQHLMNDVFREFLDNFVIC FT YLDDILIYSKNVKEHEIPVCQVLQKLRDAGLYAKMEKYVFHTTQVDFLGYI FT ISNDGLMMDSKKVQTIVDWKIPRTIRDVQCFLGFANYYRIFIKDFSRVAAP FT LTCLTSKDKFQWNQEAEAAFEALKTSFVAAPVLYRVDFSKAFFMETNASDF FT ALGALLSQMGTDDKLHPIAFHSKKFSAAEINYEIHDKELLAIVDSFQEWCH FT YLEGASSPVTVYTDHKNLEYFMSPRALNRHQARWSMSLSRFEFIITYRPKK FT QQDLFDALSRRSYFVPKEGDAAFEQQRMVLLKPEQFHLRAMKSTLTIDSTF FT LKQIQSSMSSDPLIYDIENNSSKSHDPSKFEFKNNLLYFEGRLYVPEGEAR FT LRVLQARHLSSWSSVSMDFITDLLSSRSYDSIFVIVDRFTKMAHFVPCTKS FT ITGEETAKLFIDNIYRYHGLPKDIISDRGTQFVSRFWRTLFKILKVDIKLS FT SAFHPQTDGQTECVNQVLEQYLRCTINYHQDDWTTLLPLAEFAYNNTVHST FT TQQTPFFANYGYHPRLDTFDFSKVDNPAAEDMANRLSELHAIMKTQLKEAQ FT EQQKINANLYC" XX SQ Sequence 4724 BP; 1540 A; 934 C; 900 G; 1350 T; 0 other; gattgacaag agtacactta caatatcaga gctttgtttt ctgaaatgaa gagtgcaatg 60 gcacaaatgc aagagcaaat gagggagtta atgcttgcga tgcatcaact caattcacca 120 acacaggaaa gaacaagaat agcagaaagt ggagatatag agatgatcgg agctgcttca 180 acatctacaa caaatcacgt tccttttcca attgtacaac accctataag cactagagaa 240 ccaagaattg ccttacctga gaaatttgat ggtacgagat caaagtttcg agggttcatc 300 aatcaagtac aattggcaat tgaacttcaa ccgcaaagct atccaactcc aggatcacaa 360 gtcaggttta ttggcactct actttctggt tgtgcattat cgtggttttc gtcttttctt 420 gaacaacgaa atccaatatt ggacaatttg gaagcttttt tggcggagtt ttgatctatg 480 tatggtgaac acgatgcaac tcgtgtagca acaaataaga tccgaattct gcgacaaaga 540 aatcgctcag taacagtata tgcttcacaa tttcgacaac ttgcaattga catcaagtgg 600 gatgatgctg cactcatcag tcaatttctt tatggattgc aatacgaagt aaagaaattg 660 atgctcaact tacctgatcc tcaaactttg agccaagcaa tcgattttgc ggtaaaatat 720 gataatcgac tttttcaatt tcgatctgag aatcattcac gggaacctca acgttatttc 780 tcaatggcaa catcaacatc tttgccaaac atacattcgg aagttgaaga catgcaaatt 840 gacggggtac gttttaaacc tctaacttag caagaaaaga ttcgtcgtcg tcaagaagga 900 ttatgtttat attgcggaga acctaagcac actgctcaac attgtccaaa gaaatgacgc 960 aactataaaa tgaggggtac gacggtcaaa gaagacaaca tgtcggaaaa cggatctgtc 1020 cagctacaat agggaccgtg cagctggaac cttgtacaat tcctaatgaa ggtcctatcc 1080 tctcctcaga accctctcct tgttttataa tagacttata tttaggacct aagaattaca 1140 aagcctctgc tttattagat tcgggagcct cagcatgttt tttagatgaa caatttgtta 1200 aaagtcgtaa aataccctat gtacagaaac ctaaactagt acatgtagag gtcatagatg 1260 gtcgtccctt gtcttctgga gatgtcactc atgaaactca tcctataaaa gtaacaatag 1320 atggtcatga tagctacata gcttttaaca taattaaatc cccgtccaat ccagttattt 1380 taggtttatc ctggctagaa aaatataacc ctcgaataga ttggaatttg cgtaaaattg 1440 acttttccaa aagcattatt aatagttcta cgaaccaagt aaaaaattat aagtctagta 1500 cagtaaaacc cgtactaata ggtgctcaag gaaggaactc agccaccatt tggaccaatt 1560 tacagtttat cgcaagatga gatggctgaa ctcaagacat atattgacga gaatttagcg 1620 aagaatttca tacgccattc aaaatctcca gcaggagctc caattctatt cataaagaaa 1680 aaagatggat ctttacgaat gtgtgttgat tatcgaggac tcaacaagat cacaatcaag 1740 aacaggtatc cattaccttt gatatcagga cttctagacc agttgaatca agctaagatc 1800 tatacaaaaa tacatctaag aggagcatat aatctagtac ggatcaaaga aggagatgaa 1860 tggaagactg cgtttcgaac caagtatgga catttcgaat ataatgtcat gccctttgga 1920 ctcatgaatg cactagctgc ttttcaacat ctcatgaatg atgtatttcg tgaattctta 1980 gacaattttg tcatctgcta tctagacgat atcctgatct attccaagaa cgtcaaagaa 2040 catgaaatac ctgtttgtca agtattacaa aaacttagag atgcaggatt gtacgccaag 2100 atggaaaagt atgtatttca cactactcaa gttgactttt taggatacat catttcaaat 2160 gatggtctca tgatggattc taagaaagtc caaacaatcg tggattggaa gattccaagg 2220 acaataagag atgttcaatg tttcttggga tttgccaatt actatcggat cttcatcaaa 2280 gatttctcac gagttgcagc tccacttaca tgcttgacta gtaaagataa attccaatgg 2340 aatcaagaag cggaagcagc atttgaagcc ttgaagacat cgtttgtcgc tgcaccagtc 2400 ttatatcgtg ttgacttttc caaggcattt tttatggaaa caaatgcatc agattttgcc 2460 ttgggtgcac ttttatcaca aatgggaaca gatgacaaac tccatccgat agcttttcat 2520 tcaaaaaaat tctcagcagc cgagatcaat tatgagatcc acgataaaga acttcttgcg 2580 atcgtggatt cctttcaaga atggtgtcat tatctagaag gcgcttctag tccagtcact 2640 gtgtatacag atcacaagaa cctcgagtat ttcatgtcac cacgtgcgtt gaatcgtcat 2700 caagctcgtt ggagtatgtc tttgtcaaga ttcgagttca ttatcactta tcggccaaaa 2760 aaacaacaag atttgtttga tgccctatct agacgttctt attttgtacc aaaagaagga 2820 gatgcagctt ttgagcaaca aagaatggtc ctcttgaaac cggagcaatt tcatctccga 2880 gcaatgaaat caacattgac tattgattca acttttctca agcaaatcca gtccagtatg 2940 tcctcagacc ctcttattta tgatatcgag aataattctt ccaagtctca tgatccttct 3000 aagtttgagt tcaagaataa tctattatat tttgaaggac gcctatatgt tccagaagga 3060 gaagcacgtt tacgtgttct tcaagcacgt catgactttc cagctggtct tctgtttcta 3120 tggatttcat cacagatctt ctaagctcaa gatcttatga ttctatattt gtgatagtag 3180 atcgtttcac caagatggca cattttgtgc catgtacaaa atctatcaca ggtgaagaaa 3240 cagctaagct tttcattgat aatatctatc gctatcatgg attacctaaa gatatcatat 3300 cagatagggg aactcaattt gtgtcaagat tttggaggac ccttttcaag attttaaaag 3360 tggacataaa actatcttcg gcttttcatc ctcaaactga tggacaaaca gagtgcgtaa 3420 accaagtctt ggagcaatat ttaaggtgta ctatcaacta ccatcaagat gattggacaa 3480 cccttctgcc attggcagag tttgcttata ataatacggt acattctacc acgcaacaaa 3540 cacctttttt tgccaattat ggctatcatc cacgacttga tacttttgat ttttcaaaag 3600 ttgataatcc tgcagcagaa gatatggcaa atcggttgtc agagttacat gcaataatga 3660 agacacaatt gaaggaagct caagaacaac aaaagataaa cgcaaatcta tattgttagg 3720 agcaaccaca actcaacgtg ggtgataagg tatggctact tcgtcgcaat atcaagacta 3780 ctcgaccttg tgacaagttg aactatcgta ggcttggccc cttttctgtt tctgaataga 3840 tcaacccagt tgcatatcgg ttgcatctac tagagtcaat gaagatccat cctgtattcc 3900 acgtatctct tcttgaacca tataagacag tggatataca aggaagaaga caaatgccac 3960 cgcctcctat agaagtagat aataatgaag aatttgaggt ggaagagata ttagactcaa 4020 ggcggcgccg aaataagctg gaatatctta ttcattggcg cggatatgat attagtgaac 4080 gcacatgaga gccatccagg aatctagcaa atgcatcagc taaagtcaaa gtttttcatc 4140 aacgacatcc atcaaaacca agatgaaaat ctctcttata aaagagacaa gattgaggca 4200 agataacatt caatttccta tccttgtttg taacttcttt gcatttgtga cgctaattag 4260 atggagagcc aacaaccagc ggattcaact caagaacctt cgtttgctga cctgccggac 4320 gagacattac gatagtcaca accttcaaga cgacgcaatc gagatgaaga tcttcaagaa 4380 cgacatgttc ttcctcgaat agatggtgag atacaacgcc tttgacatca cgatttggga 4440 aggcactccc gatgtttggt gattttgcta gaggtaggaa caactcctga tggtgttccg 4500 aatattctat tcgaaggaag ttatgaaggc ctctataatg atcaaataac aaggtggtct 4560 tcccgccctg gtataggaca ctaccgatgg ttgagaggcc ctatcaatca tcttcgaaga 4620 gaacagagat cagagtatgt ggcgaatata attcgtagca tcatagattt cctcaacata 4680 tgatgaccac tcctcgtgga actcgactct agaagggggg gtaa 4724 // ID Gypsy-59_PIT-LTR repbase; DNA; PLN; 353 BP. XX AC AATU01006438; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-59_PIT_; KW Gypsy-59_PIT-I; Gypsy-59_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-353 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006438; Positions 2843 2491. XX SQ Sequence 353 BP; 101 A; 73 C; 81 G; 98 T; 0 other; tgtaatgggc tctcccaagt tacatatgta ggtagtttta taggttcttt gtagtggttc 60 acaccattac ataagtaggt agatttgcat tacaaaagta ggtgcagcag cacacgagta 120 gcgtgtgctg aactgccgtc accttattgg ttgaaatatg gggagccaga cccataatca 180 accaataagg agttgacgtg tatttaagtg gtcagggcaa gctgccctgg acctaaataa 240 aaaaacagag ttgattttcc ttcagactaa gtacttggtt tcagtatcac tggacttgta 300 cgcttcctca tcactacgtg taagcaagta acggacaccc caggcccgtt aca 353 // ID Sola1-1_PI repbase; DNA; PLN; 2936 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Sola1-type DNA transposon-consensus. XX KW Sola; DNA transposon; Transposable Element; Sola1-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2936 RA Bao W. and Jurka J.; RT "Sola1 DNA transposons in Phytophthora infestans."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [1] (Consensus) XX CC TIRs are imperfect. XX FH Key Location/Qualifiers FT CDS join(179..1390,1381..2550) FT /product="Sola1-1_PI_1p" FT /translation="MQCPETESNTTAPAPAVAVPVPPPAPPVLVNAEEHGP FT HRATKQPADTRAHTNTATADLTSIAQPTAPRVALPSATVPQQEGSPASDEA FT DEGSEDEQESDEEADDSDDEDWSDDNEDEEEDEEASTGESGVSDAAEEEED FT ISINLIEVSLQQTVAGLIQADKCDRRCLQGKAQELEWLVCSISQMTKSEKL FT TSLYTMLGVLMQTDTVERHRGDGKREKFHYYLPLAGRVCRPMFAKCLGVTP FT LTIQRYKKRVREGNIAAKAHGNTLNKHASVIDLVWLVKWFKEFSAEVGEVV FT PVRVRLQKTANGTVKKYYSSEMYTLLPPTFTWDAIYDEMHTYVEEIRIRVR FT EPAKSTMRQLLTLHCPNIRIRSGRSNVCDLCSIYQSRMRGGATAEQTEELG FT KHTLSAREMRGNEVILDLGYEYHFVLLAISKVDTNIILFCWCICRQEYNRD FT KALVKTTEGKDVAVIVMDYSQNLTAPSVTSTPSQWYFCSLVSVSVFGIYYE FT NECKQTNYIYDESVGGKGSEQISSTLQHFIDNVLVPAGKKRLVIYADNCSG FT QNKNNYVIKFLLAQAHMEVFESVDYKFFVKGHTKNSCDRGFGHIRKHLART FT DCWTLGQIVREVKEAASSNETVHISRDDGFFKSYKPLLTELYKKLLGVQQF FT QIFIMDSTKPGVVICKKGPTSIAVEKDLRRKLDGHLTERHKVTRMFSSYLE FT TMPPPPRNAEKIDQMHRTIRPYVPDEYQSDAIYAAPSKQQGDSAKAAKQAR FT REHRAAMAVTAKENQDKRGRQDDKDQTRNTKKRKAAYTGDAVV" XX SQ Sequence 2936 BP; 829 A; 691 C; 771 G; 645 T; 0 other; gagactgcgc gagacataat gatactaatc aaccatttgg agttatcgag atattcgcgt 60 ctaaagatcg cccacgtgtt ttcgcacttt atcgagtagc tgaaaaaaca agcgtcaaag 120 tttttcagaa atttgaagca ggtgtatcat tcccgaacag cgcactccag cctcgagaat 180 gcagtgcccc gagaccgaaa gcaacacgac ggcacccgct cctgccgtcg ctgttccagt 240 gccgccccct gctccccctg tcctggtcaa tgcggaagag cacggccccc accgtgccac 300 gaagcaacca gccgacacca gggcgcacac aaacacggcc accgccgacc taacaagtat 360 cgctcaacct actgctcctc gtgtcgcttt gccctccgct acagtacccc agcaggaagg 420 gtcgcctgcc agcgatgaag cagatgaagg gagtgaagac gaacaggaga gcgatgagga 480 agctgacgac agtgacgacg aagattggag tgacgacaat gaagatgaag aggaagacga 540 ggaggcaagc actggtgaga gtggtgtaag cgacgcagct gaagaggagg aggacataag 600 tatcaatttg attgaggtga gtctgcaaca aacagtggcg ggtctaattc aggccgacaa 660 gtgtgatcgc cgatgtcttc agggaaaagc ccaagaactt gagtggctcg tgtgttcaat 720 ctcacagatg accaaatcag agaagttgac aagcctctac acgatgctgg gcgttctcat 780 gcagacggat actgtggaga ggcaccgagg agacggaaaa cgcgagaaat ttcactacta 840 cctgccactg gctgggagag tttgccggcc catgtttgca aaatgtctcg gggtaactcc 900 tttgactatc cagcgataca agaagcgtgt gcgcgaagga aacattgcag ctaaggcgca 960 cgggaacaca ctgaacaagc acgcttctgt catcgatctc gtgtggctgg tgaagtggtt 1020 taaagagttc tctgcggagg tcggggaagt agtaccagtg cgtgttcggc tgcagaagac 1080 ggcgaatggc acagtgaaaa agtactacag ctctgagatg tacactttgc tgccgccgac 1140 gttcacgtgg gatgcgatct atgatgaaat gcacacatac gtggaggaaa tcaggattcg 1200 agttcgggag ccagccaagt ctactatgag gcaactttta acgctgcact gccccaacat 1260 tcgcatccga tctggccgtt cgaacgtgtg tgacttgtgt tccatttacc agtcgcgaat 1320 gcgtggaggg gctaccgcag agcaaacgga ggagttgggc aagcacacac tgtctgctag 1380 ggaaatgagg taattttgga tctgggatat gagtatcatt ttgttttact agcaatttcc 1440 aaggtggaca ctaatatcat attattttgc tggtgtattt gtagacagga atataacagg 1500 gataaggctc tcgtaaagac aacagagggc aaggacgtcg cagtaatcgt tatggattac 1560 tctcagaatc tgactgctcc gtccgtcaca tctacgccgt cgcaatggta cttctgctcg 1620 ttggtctctg tcagtgtgtt tgggatatac tacgagaatg aatgcaagca aacgaactac 1680 atctacgatg agtctgtcgg tgggaaggga agcgagcaaa tcagctccac gctgcagcac 1740 tttatcgaca atgtgttggt tcctgctggc aaaaaacgat tggtgatata cgctgacaac 1800 tgctctggcc agaataaaaa taactacgtg atcaagtttc tgctagcaca agcccacatg 1860 gaggtttttg agagcgtgga ttataagttc ttcgtgaaag gacacactaa gaattcatgt 1920 gaccgtggct ttggtcatat tcgcaagcac ctcgcccgca cagactgctg gactttgggt 1980 cagattgtcc gagaagtaaa agaagccgct tcatccaatg aaactgtgca catttcacgg 2040 gacgatgggt tcttcaagag ctacaagcca ctactcacag agctctacaa gaaattgctt 2100 ggcgtgcagc agtttcaaat atttataatg gattccacga aaccgggggt tgtgatctgc 2160 aaaaagggcc ccaccagcat tgcagtggag aaggatctgc gtaggaagct agatggccat 2220 ctcaccgagc gccacaaggt gacgcgcatg ttcagcagct acctggagac gatgccgccg 2280 cctccgcgaa atgcagaaaa aatcgaccaa atgcatcgca ctatcaggcc ttacgtccca 2340 gacgagtatc agtcagatgc aatatacgca gctccaagta agcagcaagg ggacagtgct 2400 aaagccgcca aacaagctcg tcgagagcac cgagcggcaa tggcagtgac cgcgaaagag 2460 aaccaagaca aacgcggtag gcaggatgac aaagatcaaa cgagaaacac taagaagcga 2520 aaagctgcgt acactgggga tgctgtagtg taagtttgcc aaaatgtccc gcctaaatca 2580 aaatgatact gatgtccatc actaaattta ggcttttttt cagattatac acatgggttc 2640 actcggattt gatcacacaa atgcggtttt agacactttc ttttgcgttt tagccgaaac 2700 gaatagcacc acgcgattct acgggcgatt ctgcctcaga cactgcaata aaaaaaatga 2760 aaaagttggt catccaccga ggtaagtttt ccagaggctc accacttcgt caatatctcg 2820 tgtccgaagg tgtgcaaggg ctcaaaacga agccaagata cataggtttg tgttggtgcg 2880 cctaaatcgc gattcgtacc taggttgatt agtatactta tgtttcacgc ggtctc 2936 // ID Gypsy-15_PIT-LTR repbase; DNA; PLN; 870 BP. XX AC AATU01000091; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PIT_; KW Gypsy-15_PIT-I; Gypsy-15_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-870 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000091; Positions 12366 13235. XX SQ Sequence 870 BP; 251 A; 173 C; 305 G; 141 T; 0 other; tgtaacaggt tgatgacgtg gtctaccgaa gatcttccgg aagagtgtac gttggcacgt 60 agccagcttc aacgtggaaa gggtgtgacc aaagggtgga aggagcccaa cggattcaac 120 ggacacacgg ttaggacgga gatcgcagac ggcgagccgt cgcgaccggt ggcgttagac 180 ggcaggaaga gcaaggaggt gggtactccg gaatttgcaa aggatgggac aggtagatcg 240 aggagtgtga cgagagacga aagacggtcg agggctggaa gtacagtcag cgacaagaca 300 aagacgaacg aaagggctgt tggggcacag agtgtggctg acagaacgta cggggttgtg 360 gtgaacgcac tgcagtaccg tgaaacgaag gacaagtagg atccaaggag gagaacgtac 420 ggacaagcgg agcgacgtac ggtgagacca gacaggggaa gtagagtacc tgagttcgct 480 gtggtggccg cgcacgagta gggtaggcgc cgtgggcgta cgcccaagtg gcttggagat 540 tgagcgtgat ctggatcgca tcgggacgtc acggtgcttc ggcgaggacg tgggtgatct 600 gactggagac tatctgttca gggacgaaga aggaagaacg aaaacgaaga acgaatctct 660 attagcttac gtaaggttag ctaaggagaa ggaatacaaa aagtaggagc caaaggttcc 720 ggcacagggc tcagtggagc atctgctggc cagtgacgtc ttcgagtact atcaagtaac 780 aactacggac tagagacaga cagcgcagca ggcacataaa ctaagcgatt tgcccagcga 840 gtcgggcagg aggaatagca actcgttaca 870 // ID Gypsy-6_PR-LTR repbase; DNA; PLN; 249 BP. XX AC AAQX01000699; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PR_; KW Gypsy-6_PR-I; Gypsy-6_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-249 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000699; Positions 5922 5674. XX SQ Sequence 249 BP; 78 A; 60 C; 66 G; 45 T; 0 other; tgtagtggcg gcctgggaca ggctgccttc agcagacact tcgcacggtc gttaccaacg 60 acatgaagaa gcatgagaga ggggagaact ctcagagcaa ttgtatattg catagtaagg 120 aggcatatag caaagcgaaa ctaacagaag ccactgcggc tcgtgccgca gcggctgcat 180 tgaataccag aattcatttc acctccaagc aaggattctc aagcaagcca agggtcgaaa 240 gacactaca 249 // ID Gypsy-2_PSo-I repbase; DNA; PLN; 13523 BP. XX AC AAQY01000320; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PSo_; KW Gypsy-2_PSo-LTR; Gypsy-2_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-13523 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000320; Positions 62946 76468. XX CC Positions [8803-9138] - Integrase core CC 'CCTA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2674..4350 FT /product="Gypsy-2_PSo-I_1p" FT /translation="MQQLVQANQVKSEVTGMSRSAGKTQGPAKRAETKSKR FT RASSATSGTKGKARATKPGRPGDSDGDDSGSDDSSSSYSSQDELEGQFGTV FT AQPKGTDTSSGTRVVVQAMIPHDALEKFDEKGPLEDRVNWWERFMYYATMA FT PWDEKTRVVQLRMRLTGSLKDWCTQLRDDVRSDWKKLSHVFKKEWCRTLNS FT KAERYYSMEMKDSDTPRMFFYRLNHTAKKAGIPYLRPTVDREAHIRRFIKA FT LTDSRLRTTLQGQRFDTLDELEKTLKRIEALLQDESYEQKRRPAQGLQFGR FT FKPPQCQAEGRAFKAEGVEVDPSLGRHAHFQDDYDLKYEADSEEDVDRSAE FT RTMSPPVPAPAPAAASSAQAEPSRSTSLTDEEIFRVAERLAWKPNAQRYDR FT GGEQHPEQKCDECGSRNHPTDKCWSRLICGRCHDEGHPTQFCRRQSCSKCG FT EYHRRGLCDMWSALKAVREAIRTGGSVEGLAPEVIQALLDSPELREKSLNH FT LARWLGDQCVTSLDPKRSVPLHMWAQPFHVGAEITPNVQFLIMKLVFTLSI FT LTATRWTRRMKW" FT CDS 4347..6953 FT /product="Gypsy-2_PSo-I_5p" FT /translation="MVNHLEFDMTPGEMYGWWSEHTLTGEKRKMAMVHGAI FT FHHRTQILLDTEATTSILGLGLARRLKRKLRRGFRLRVTGMGDAPTYITAQ FT AKIKLTLVVRVVYVMDVWVGNIGEGVDCLLGMDFLVAAGVRLCAREGVVRL FT PDEESLLLVGGPEIDHVGLEVSVWLNETAYLYPGQSVIVPVKYHQADPEKV FT IPWAGRGDQWVPQFIYGPGRKPKAVKVANISEREVMIRQHTVVACLVEKRY FT LPNGKRFVRPYSWKYRESAQLIYEAEPSPDVLRREEGAARLAELNAPPAVE FT RTVYKRPMKLLLLKQSDDPKEDRANMKQRRAEAYAANTVSPETAQVKMART FT PQGRPASWKPLPRSPHPDDVQSGTNQGNTSEGADTQPAAEPSSSESNSAQT FT SPAGGGVNAQEARNELDHVFKAEPTDFAPDPIARLQETYARCLRVEISEDA FT DEATVYFHEGTELLNDLRDQFAALPELKDLSPNADLSTANVGEPGVTTPEM FT DAQVRTILERHHASFLGDGNAVPATARGVVCDLDVGDAKPIAQRSRQVPTH FT LLDKVFALIKKLLETGLIKYSHSDWASPIVIVMKKNGADIRLCIDYRLVNQ FT LIKLSHYPLSLIDDLLIGFEEAMWFLSLYMTSGFWAVPMTLRAKLISAFIC FT PLGHFQWKRMPFGLKNAPLMYQQMLDNCLWGFVRLPPCEEARVGPDVLEFL FT DIEVDDSAKEEEISPLSEETTVFRRNIPAPPQLSPVLGRSSYIDDIAYGAE FT TWDQMCEVLDRLLYRLRYWGISVSLPKSEFGKKSISYLSHEIGADGIRAKP FT KIAKGVKDLPFPSTLKGVQSFLGSLNYYNKFIEDLPVVASVLYELTDEQIQ FT AGRDLGRAKEAFEILK" FT CDS 7630..8799 FT /product="Gypsy-2_PSo-I_2p" FT /translation="MAKARGISDLVVVGDSRIVIQQAQGLIQCLSPGPQVL FT LAEFETLRPEFQRLRLVHVKREYNAAADYFTSKTLVTEGPVAIEDPVELVL FT LKQLNRIPEKLIKVNETEPAEPETEQPDTQADVEVVAEPTPLEDAAKPLLP FT SAKIFVVTRSQARARDAETTAARDESDQSVDPDQNAEPPADQAPVYSPEAA FT TPAASIAERWRRILVLQEAEPWTKKLKDYLNGDLGNLSATEAEDVAKVVDQ FT FTLDSRGVLYYLSRATPGRPRDAVGNLRLVVTTALRDDLLQLSHEEFQGGH FT QGITRIFERLCKEYYWPRMYADVEHYVKECVDCVTAKGAPPNPGPSPGIIL FT ATKLFEVVSMDFVTHLPKSDRGNVFLLLFQCAFSGFIMCKPMSLTTA" XX SQ Sequence 13523 BP; 2891 A; 3606 C; 4219 G; 2807 T; 0 other; cgtggtgcgc gtgcccggat cagggatacg actttggaca gacaagctac agtcatgtcg 60 actgctgctg attcgaagaa accaagactg gaggtgagaa gagcgagtct tcggttctgc 120 gaagtttgag agtggctgga ttgccagccg aggtggtgcc gacggagtct ggggcgccca 180 gggcgagagg attgactaag ggagcccgga cacccagtgc tgagggagaa gctgcgtcgt 240 caggcgaggc tgcgccaagc gctgagccgg aggtgccacc aacgacggaa actgctgtac 300 cgccaccaag ttcgcccgag aggaagaagt ctgagggtga gcaaggtggc ggagcgggtg 360 ctcagccgag cgctcgtgtt ggtgaaagtc caagcctgag agagcctgct gtgagccgag 420 cgttgacgac gcgcaggact tctgaggcca tgactgcaac ttctcagttg caaggtgcta 480 acccggagcc aactgctgcg gatctccgca gtggacaagc cgagagtggt gccctgagcc 540 tgctgggaag ccgagagatg cagctacaag ctcaaggtgc tgctgggact gggacgggcc 600 cggtccagtt cagctttact tcgggagctg gatactttgg agcgtcaagt ggaggcggag 660 cctggtcaag ttcgctttgg ccggaccaac gcccctacca gaggctgaga ggagtccccg 720 aaggagtcga ggctgacagc cgaaccttgg cccagctgtc tgagctgttg gaagtcgaga 780 tgctcgcgta cggccgaacc cagttcgaga tgtggatgtc tgtgcccgct ggagtcgtgc 840 acccggtgga tgtgacctat tcgccatgcc atggaggcta tgatctctgc ggtttcatcc 900 gagcggctgg agctacggcc agacccttga tgtccgtgac tcggtcgccc gctgcgagat 960 ggctgaacgt gttccatgct gaacgtcgaa ggatccctgt cgtctccgac ctgaaagcag 1020 tgcgcgtggc gctgagactg atgccgcccg ttgcatgcgt cgctctgttg cagacgatgc 1080 tgcatgaagc cggctatgag tttctgaacc aagtcccagt gtggcacacg ctgtctgaag 1140 ttgctgaagt cccagattcg cagatccggt ttgagatcga gcgcatcgcc cgattcctcg 1200 gagctgagct cagtgcttgg aaggctgcgg tcgggtcaat cccatattac gtgaggccga 1260 cctcagaccc tcagctgatg gctgctcaag ctgttgagac tcaagtcgga tttcccttgg 1320 acaaggatgg agacgcgatc atggatgagg acactcagct gtttttgggc ccgaagtcgt 1380 gatgcgcctt cagctcactg gtctcagacc tcggagtccg acctcaagtg tcgaaggcga 1440 gccgtctcga aagcgtgcat tgctgacgag gtcttctgct agtggctcaa tcccgagcta 1500 ctacgagtcg ggcgaagctc ctgctgagac tgcgctcgga ttccgtaatg accgagtgcc 1560 cagcatggtt ggtgcaagct ctggttccga catgtctttg atggtcacgg atgaaggggg 1620 aaacctgtct ggattgagtt cctctggttc ctctctgatg tctatgactg actacatggt 1680 tgggactggg acgcacatgc ccatgtcgac ggcgacgttg atgcgaggct cagttacgac 1740 gatgccccgc agctcattcc cgggaatgac gatctcagtc acgccccagc ttactcaggc 1800 tggttccgca ccggccagag ctgagcagag gccgtatcga cctgagcatc cagcccagat 1860 accgctgccg ggcagtccag agtcgaagcg cctggccccg aagcaagctg agacccgaca 1920 agtgcagtcc acgggattcc ggttcacgca tccatccgtt atcggctcct ttggaacgac 1980 gacttcggat gacttgccct cagtcgagcg agaccaccgg cgagccctcc aacagagtga 2040 agctaccgct tgggcacgtc ttgatgcaga gcagaaccaa cgccgagctc ttgaagcacg 2100 gttgagtacc gctctggccg acaaccagcc ggagcaagcc cgactgcagg aggagtaccg 2160 gaaacttcag gcgaccaacg ttcggatgtc cgacgcccaa cagcaggcca agacggaaca 2220 gcagaagcaa cttgaagcct tggagaagct ggcccagcgc cgcgccgccg aaggagctga 2280 gaagcgcaag gcggacgagg ttcgagctca gcaactgctt caagtccaga aggcgctcca 2340 agaggctgag gttagggata tgcaagctga acagcggaag gcgcagaaag aatgagctgc 2400 cgagatcaag actaagcacg agctggaact gctgaggctg agagagaagc atgcgcaggc 2460 agaagcagag caccagcggg ccatgcagga gcaggaggag aagactcgcc agctccttgc 2520 agcccatgag cagcccagtc tatatcctgg ccccgtcgct tcgactgctg gacgtgtgcc 2580 attgccagcg gaccccccgt ttcagcacct gtcgtgtcgg ctcgattgcc gaccgatccg 2640 gtcctggcgc agttagccca ggtcacgagc gtgatgcagc agctggtcca agccaaccaa 2700 gtcaagtctg aggtgactgg tatgagccgc agtgctggca agacccaagg tccggccaag 2760 cgtgctgaga ccaagtctaa acgtcgcgca tcaagcgcga cgtctggcac gaagggcaag 2820 gctcgggcga ccaagcctgg caggcccgga gactcggacg gggacgactc tggctcggac 2880 gactcaagct caagttattc gtcgcaagat gagctcgaag gacagtttgg tactgtggcg 2940 cagcctaagg ggactgatac cagttctgga acccgcgtgg tcgtccaagc gatgattccc 3000 catgatgctt tggagaagtt cgacgagaag ggaccgctgg aggaccgagt caactggtgg 3060 gagaggttca tgtactacgc tacgatggct ccttgggacg agaagacccg ggtggtccag 3120 ttacgcatga gactcaccgg ttccctcaag gattggtgca ctcagcttcg ggacgacgtt 3180 cgctcagact ggaagaagtt gtctcacgtc ttcaagaagg aatggtgccg tacgctgaac 3240 tccaaggctg agcggtacta ctcgatggag atgaaggact ccgatacacc tcggatgttc 3300 ttctaccgtc tgaaccatac cgccaagaag gctgggatcc cgtacctgag accgaccgtc 3360 gatcgcgagg ctcacatccg acgttttatc aaggctttga ctgactcaag gctgaggact 3420 actcttcagg gacagcgttt cgatactttg gatgaattgg agaaaaccct gaagaggatc 3480 gaggctctcc tccaagacga gagctatgag cagaagcggc gcccagcgca agggcttcag 3540 tttggacgtt tcaaacctcc acagtgtcaa gctgagggac gtgcattcaa ggcggaaggc 3600 gtggaagttg acccaagtct gggacgacat gcacacttcc aggatgacta cgacctgaag 3660 tacgaggctg attctgaaga agatgtggac cgctcagctg agcgaaccat gtctccgcct 3720 gtccccgcgc cagctcctgc tgctgcaagc tcagctcagg ctgagcccag tcgctctacc 3780 tccctgaccg atgaagaaat tttccgagtc gctgagagat tggcctggaa gccgaacgct 3840 cagcgctatg accgtggagg agaacagcac ccagagcaga aatgtgacga atgtggcagt 3900 cgtaaccacc cgacggacaa gtgctggagc cgacttatct gtgggcgatg ccacgatgag 3960 ggtcacccga cccaattctg taggcgtcag tcgtgttcca agtgtggcga ataccatcgc 4020 cggggtttgt gcgatatgtg gtcggcactc aaggcggtac gcgaggcaat ccgcaccgga 4080 ggctcggtcg agggcctcgc tcctgaggta atccaagctc tgttggatag cccagaactc 4140 cgagagaagt cgttaaacca cttggctcgc tggttgggag accagtgtgt gacgagccta 4200 gatcccaagc gctctgtgcc tttgcatatg tgggcccagc cctttcatgt tggcgcagag 4260 ataaccccga atgtacaatt tcttatcatg aagctggtgt ttacactttc gatactgacc 4320 gcaacacgct ggacccggag gatgaaatgg tgaaccatct tgagttcgat atgactccgg 4380 gcgagatgta tggttggtgg agtgaacaca cgctgactgg cgagaaacgg aagatggcga 4440 tggtgcacgg agcaatcttc catcaccgaa cgcagatact actggatact gaagctacga 4500 caagcatttt gggcttaggt cttgcacgca gattgaagcg caagctacgc cgtggtttca 4560 ggctcagagt aactgggatg ggagatgctc cgacctacat taccgcccaa gctaagatca 4620 agctgacgct ggtagtgcgt gtggtgtacg ttatggatgt ctgggtcggc aacatcggcg 4680 aaggagtaga ttgtcttctc ggaatggact ttctggtggc agctggagta cggctctgtg 4740 cccgtgaagg cgttgtgagg ctgccggacg aagaatctct gttgttggtt ggaggacctg 4800 agatcgacca tgtcggactg gaagtcagcg tctggttgaa cgagactgcc tacctctacc 4860 ctggacaatc tgtgatagtc ccggtcaagt atcaccaagc ggacccagag aaggtgattc 4920 cctgggctgg gcggggtgat cagtgggttc cacagttcat ctacggacct gggcggaagc 4980 cgaaggcggt caaggtggcc aacatctcgg aacgagaggt catgatccgc cagcatactg 5040 tggttgcttg ccttgtggag aagcgttacc tgcccaacgg gaagcggttt gtgcgacctt 5100 actcgtggaa gtacagagag tcggcccagc tcatctacga agctgagccc tccccagacg 5160 ttctgagacg agaggaggga gcggctcggc tagctgagct caacgctcca cccgcggtgg 5220 agaggacagt ctacaagcga cctatgaagc tgctgctgtt gaagcagtct gatgacccga 5280 aggaagaccg agccaacatg aagcagcgaa gagctgaggc gtacgccgcc aatactgtgt 5340 cgcctgagac tgctcaagtc aagatggccc ggacacctca gggacgtcct gcctcatgga 5400 agccgctgcc gcgatcgcct cacccggatg acgtgcagtc agggacgaac caaggaaaca 5460 catcggaggg agctgacact cagcctgcgg ctgagccaag ttcctcggag tcaaactcag 5520 cccaaacctc tcctgctgga ggtggtgtga atgcccaaga agctcggaac gagctggatc 5580 atgtgttcaa ggctgagccg accgacttcg cgcctgatcc gattgctcgt cttcaggaaa 5640 cgtatgctcg ttgtctcaga gttgagatca gtgaggacgc tgacgaagct acggtgtact 5700 tccatgaagg cacagaattg ctgaatgacc tccgggacca gtttgctgct cttccggagt 5760 tgaaggatct cagcccaaac gcagacctct caacggctaa cgtgggagaa ccaggcgtta 5820 cgactccaga aatggacgct caagtgcgaa cgattttgga aagacatcat gccagttttc 5880 ttggggacgg gaatgcagta ccggccactg ctcgtggagt tgtctgtgac ctggatgttg 5940 gggacgcgaa gcccatcgct cagaggtctc ggcaggttcc gacgcacttg ctcgacaagg 6000 tgttcgctct gatcaagaag ctgctggaga ctgggctcat caagtattcg cactcagact 6060 gggcttcgcc aattgtgatt gtgatgaaga agaacggtgc ggatatcagg ctgtgcatcg 6120 actatcgact ggtcaaccaa ctgatcaagc tctcacacta ccctctgtcc ttgattgacg 6180 atctgttgat cgggtttgag gaggcgatgt ggttcctgag cttgtacatg accagcgggt 6240 tctgggcagt gccgatgact ctccgggcta agctgatttc agccttcatc tgtcctttgg 6300 gacacttcca gtggaagcgc atgccgtttg gtctcaagaa tgccccgctg atgtaccagc 6360 agatgctcga taactgcctg tggggcttcg tgcgacttcc gccctgcgag gaggcccgag 6420 ttggcccgga cgtgctggaa ttcctagaca tcgaggtgga cgactccgct aaggaggaag 6480 aaatctctcc tctgtctgag gagactaccg tgtttcggcg aaacattccg gccccgcctc 6540 agctgagtcc tgttctggga cgaagctcct acatcgatga catcgcgtat ggagcagaga 6600 cctgggacca gatgtgcgaa gtcttggacc ggttgcttta tcgactgagg tactggggga 6660 tttcggtgag cttgcccaag agcgagtttg gcaagaagtc tatctcctac ctctcgcacg 6720 agattggagc tgatggaatc cgggccaagc cgaagattgc caagggagtc aaggacctgc 6780 catttccgtc gacgctgaaa ggagtgcagt cattcctggg aagtctcaac tactacaaca 6840 agtttattga ggacctcccg gttgtagcgt ctgtgctcta cgagttgacg gatgagcaga 6900 tccaagctgg acgcgatctc ggccgagcta aggaggcgtt tgaaatcctg aagtaaaaaa 6960 ttgtctctac cccgctgctc agacacccga acagggagaa gccgttcgtg attattctgc 7020 acgctaatcc ctgggcagta tgtgcggtgc taggccaaga gtacgatgga gtcatttacc 7080 cggtgcgaaa cactgcatga caggatgctc agataccacc cggctgataa ggaggttgca 7140 gcgttgctcc gagttctcag agtcttctac tcgatgctga gtggttgcaa gctgctgaag 7200 gtctacacgg ttctgaaatg gttgttcaag tatcggtctc tagagggacg ctgtgagcag 7260 tgggctgcac gtctgtcgcc ctggcctttg gaagttcaca aggtcgaacg cgatgaagat 7320 ggtttggccg cgatcatggg agctgggatc accccccgtg accagttgga caagatcgca 7380 gagaacctca tcccagacaa gggacgagtt gtccgagccc caccgatcag cttggagatg 7440 ctggagacgg actactaggg atggctgctc agctttgatg gagctgccaa actctcggat 7500 cgctctggtg cttctggctg cattctgtgg aagctcccat cctgggacgt ggtcgaagct 7560 cgaggattcc acttcgaagg cattacggtg aacgaagccg agtaccatgg actgctcgag 7620 ggagttcgca tggcgaaggc tcgtggcatc tcagaccttg tggtggtcgg tgactctcgg 7680 attgtcattc agcaagctca gggcctgatc cagtgtctga gcccagggcc gcaagtgctg 7740 ctggctgagt ttgaaacgct tcgcccagag ttccaacgat tgcgcttggt acatgtgaag 7800 cgagaatata acgcagctgc ggactacttc acgtcgaaga ctctggtgac tgaaggtcct 7860 gtcgccattg aagatccggt tgaactggtt ctgctcaaac aactgaatcg gatcccggag 7920 aagctgatca aggtgaatga gactgagcct gctgagcctg agacggagca acctgacact 7980 caagctgatg tagaagtggt ggctgagcca actccactgg aagatgctgc caagcctctg 8040 ttgcccagcg ctaagatctt cgtggtgact aggagccaag ctcgggccag ggacgctgaa 8100 accacagcag ccagggacga gtccgaccaa agtgtcgatc ctgaccagaa tgctgagccc 8160 cccgctgacc aggctccagt gtactcacct gaagcagcaa ctcctgctgc gtcaatcgct 8220 gaacgatgga gacgcatcct agttctgcaa gaggctgagc cttggacgaa gaagctcaag 8280 gattatctga atggagactt ggggaacctc tccgctactg aagcggaaga tgtggccaag 8340 gtggtggacc agttcaccct tgattcgaga ggagtcctgt actatctgag tcgagctact 8400 ccgggaaggc ccagggacgc agttgggaat ctgagattgg ttgtgacaac ggcgctgagg 8460 gatgacttgc ttcagctcag tcatgaggag ttccaaggtg gccatcaagg gatcactagg 8520 atcttcgagc gactgtgcaa ggagtactac tggccgagga tgtacgccga cgtggaacac 8580 tatgtgaagg aatgtgtgga ttgtgtcact gccaagggag ctccgcccaa ccctgggcca 8640 tcgccgggaa tcattttggc gactaagctc tttgaggtgg tctctatgga cttcgttacg 8700 catctaccca agtctgaccg tggaaatgtg ttcctgctcc tgttccagtg tgcattctca 8760 ggcttcatca tgtgcaagcc gatgagtctg accacagctt aagatgtcgc cgaggcctac 8820 atggagtgtg tgttccagag gtttggtgcg agctctctac tccgccatga ccgtgatcca 8880 cgtttcatga gcgaggtgtt cgccaggttc cgcgagatgc tgggaagtcg gcagcgcgcg 8940 actctggcgt acagacctca ggcaaatggc cagcaagagc gctcagtgca aacagtggtc 9000 cgagctatcc gagcgtacgt cgctgagcca gatcagagcg actgggacga ccaggtagag 9060 aagttgatgt gggctctgaa cacgtccttt gacgccaccc gtctcgacac gccgttctac 9120 ctggtccacg gctgggaccc tcatagcact gtttcggcca tgctgggacc atctccgacg 9180 ggcttggatc agaggactgc ctatgagtgg cgtcgcaaga ctcagcgcga gtacgagtac 9240 gctcaggcct gggctaagga cttacaagct gaggccaagg tcaaacgctc agctgctcag 9300 acaaaaatct gggctgagct gtccgagaga ctcaagaagg atttcgacgt tggtgatgct 9360 gtgtggctat acctagctcg agtacaacct gggctcacga agaagttcgc tcacctctgg 9420 cacggtccgt tccggattct ggagacttca gatgacttcc gatgcaaact gaagggttaa 9480 gcggacctgg acttcacgaa gggtctgaga gtacttggtc aagtggaacg ggtaccctga 9540 cactgagtgg cttcccatgt ctcagctaag ttgcggagct ttgctgtacg agttcaacaa 9600 gagcgccaag gcgaaagcac ggttccaagc aatgcaagct ggggatgagc ctcctgagcc 9660 tgatgctcaa tagaggcgcc tccgctgtga acctgtgtat gtcgctgtga tgttctatgt 9720 gtgaacactt tgtattatgt gaatttacga ctacgctaag tgatgtggag aatggcttgg 9780 cgtttctcgt ggagaacagc gggtgagcgc gaagtgcacg cgcgtcaaga agctgagatc 9840 agtgagggtg aaataggcaa gaagcgaagt gaaaaacgag tggtgaatta ggaataatga 9900 tgaacgctcg ttgcctacgc ttcctcagtc tcctcctctg gcgcagcctc cagagcacga 9960 agcacctcag caagcgtgtc gtggttgtac tccggcgctg ggataatggg gttcgccttt 10020 cgttcggctc tgctcttggg cttgagctca ggtgggacga ccgcctcgaa ctgcttgtcc 10080 gagcgacgtg tagcccactg cgtgcgggcg ggctcctggt catccagggt gaagatctca 10140 tccgccagcg aaatcttgag atccgggtct cggagaatcc agtggcacgg gtccttaggc 10200 acagcccaga gtccgggctc gaaccagatc cgatccgagt aacccttgac gcccttgagc 10260 tggtctacca agtccctgcg acgaagctcg aactcttggg cgcggtcctt gcgctctcga 10320 tagacggtgg ccagctcagg caggcccagt tccttggcga gctgaatgta gtcgatcttg 10380 ggcgggaacg ggtaccagtg gagtcgctcc cagtacgctc gacgccaagc gctcataaac 10440 ccagcaatta cgacgaccgc ttcacacatc tcaggagtga gttctgcata cgtgtggtag 10500 acgaggacgt taactcaggg gtctgatctg agcagctcca aataagcgcg tactcgatgc 10560 gcttgtggag ttgctcgatc ccagtcttgg acggcatgta ggccgggaaa ccaatcgtct 10620 ggtggtgcag cttctggact cggatgccgt tgtggaacca gcttcctttc ttgggtgctt 10680 cgatgacgcc gttgtcgaca ccttcttcag gagtcttagc ttcgtctggt tcggggtcac 10740 ctgaagtcac agaggttccg gaagctgagc gctggcgctt ggtccctgag ctacccccag 10800 aagatgtcga actccgctgc cgtttcttgt ctgctggaga actctgagac ctggtgctga 10860 tggagcttag agccttgggc ttcgacccgt gataactctg gtcgttgtcg tcgtcatctg 10920 tgtcctctga ggagagcaca gacatgaacg aggagtccga gtcgtcgtcg tttgcgcccg 10980 gtttaatggg cagagctcgc cagggtactg ggattcttgt caggccggga gtctggttgc 11040 cgccgcgtcg aagtacttgt ctgggacgta ctgcatccac ggagtgccgt ccagagcctc 11100 ctagtacatc actgaagtca acatgtagat caggttcttc ctgccgaact ggtcgtggag 11160 catctggtcc ttctggacct catccactgc atcccagaac gccacgccag ccaacatgag 11220 ctcttggacg tctgggcgag ggccatccca gctgaactgg tttggcacag ccgtcgctgc 11280 gtccagatcc gagcgggcac tgggagactc cttcttggcg ttcttgcgct caggcttgaa 11340 cttggtcggg cggcgtggca gcgcaattcg ctgtgtgaac ggcttgatca ttggtgcctt 11400 cgccttcggt gtgctggagg ctgagcgggt caaatccacg gtttccggcg cagctgctga 11460 gctgggcgca gcgctcgtct ggatcttcag accaccaact ttcttcgaac tgcttgaagc 11520 caaggccttg gccagtggca gcgacttgag cgctttgcgt cggattttgc tggacccagc 11580 ggaagttgat ctgcccaagc tgagcatcgg tggtgtacgc agaggggtag ccgacagaga 11640 cgagctggtc ggagtcatgg ttgcttgagc agaccccgaa ggcgaagaag ctggcactga 11700 agcagggctg ggctgagcag ctagggtcgt gtacgggtcg gagtcctcga agtccagatc 11760 gcgcgcagag acttgaatcg tggtgcgata gccggttggg acgggttgcc ctgtccgata 11820 cagctgcagc aactcgagga accgtcgcca gttgcctttg aaggcactgc tgttgacgaa 11880 gaagtcacaa aaggcgccgg gatcaaacgc tctggagtcc aagacctggg cttcgagctc 11940 agcgatgcgc ttctgagcca cggtgagctc agactcgagc gaagtgatct tcagtgcagc 12000 ctcaccgaca gcatcgtccg cgtcgagctt ctctgtggca aattgcgcgc ccagcttgtt 12060 cgctctctcg aggttttctt tgagcttttg gatctccgca gcagccgtgg tgtgtgtggc 12120 ctgaccgcta gatgctccag cagcagccct ttgaagtgct acggcgtgat tgctttgaag 12180 gtgctggagc tcagcttggt gagcctcgct ctgacttctc agggcctgag cgaagctgcg 12240 gcttctcacg gtaaacccag cagctccgga agctgaagta ttgcccacgc tctgcccaag 12300 gccttgacgg aagcgcaccg tgtgctgaag gcaatgaacc gtctggagcg acctcgcagc 12360 gagttgatcg acgccgaaac actgagcgag aggaatcatc tcacgatcca aggccgcccg 12420 atgcgaggat cagtgatgtc tggcggaggg actgagagag gctgcaacaa acctccagcg 12480 gcatcgtggc ccatgagccg gctcaagcgg gcgagctcag gggctgaaaa tgaagtcacg 12540 ttcaccagac ggctcagacc atccggagcg cataccatga gtgtgccatc gcgaagatct 12600 tcgagcgtgg ctggtacgac gacttgccct ggaggcgtga gctgatacca tggagtaaga 12660 catggctcat atggcagacg ctggcttggc tccgtccggt aacgtgacgc ttcgacagca 12720 tgcagcagtc cagcgatggt gctggtcact ggtgcgctct gtgcggtggc cgaagctgtt 12780 tgcagcgcgc tgatcgcagg caccgagggc gttgggcgta gcatgagcac tgcggcgtcg 12840 cctgagaccg catgggtcgc cgctggagcc gccagacccg tcgtgacggc cgccatagtc 12900 gtcgacgtgc cgctggaggt ctccgagaga gcgcagatgg ccgcaggcgt cgaaacgctg 12960 gccgtcgtac tgctgagagc cgacgtggtg cttggaggcg ccatggatac tcccggcgag 13020 gttgccgttg ctgttcccgc cgagatggaa gtcgtgggca ccgcgggcgc ggtctgcgca 13080 accactagcg gcgccgacga cgtcgagagc ggtgcctgca atggctcgga tgccgcgggc 13140 tcgatggaga cagccaacgg cgcgttggac gaggcctgga gtgttgcggg agccgcggga 13200 gcgccctgcg acgctggatc ttgatttacg ccgcccgcgg gcggcgcgtc ggactgctgc 13260 gagtcggcca tgcgtggcac gaggcagcgg aagtggcgga tgcggacgag aacgcgcggg 13320 ttgccgtgga ggcgcaacac ttgatgacgc tgcagtttcc actgcgaaac cctagactgg 13380 aatttcgcaa atggtttgtg attacactcc acaagttcgg caggatcgga cggttgcggg 13440 acgatgcgct ggtcatctgg gttatgggca ccgggtccaa gtcgaaaatg acctccgtga 13500 acccggcact cataagggac ggt 13523 // ID Gypsy-14N_PPa-LTR repbase; DNA; PLN; 1605 BP. XX AC . XX DT 16-DEC-2009 (Rel. 15.07, Created) DT 16-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a non-autonomous Gypsy-type LTR DE retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Nonautonomous; KW Gypsy-14N_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1605 RA Bao W. and Jurka J.; RT "Non-autonomous LTR retrotransposons from moss."; RL Repbase Reports 10(7), 1041-1041 (2010). XX DR [1] (Consensus) XX SQ Sequence 1605 BP; 509 A; 141 C; 301 G; 654 T; 0 other; tgtcatgtgg taacatgact atatggtgaa aaataaaaat aaaatggatg ttattataga 60 agagcctagt agaaagatgt agtagaaaaa taatgataaa ttatagaaag gtagtaaaaa 120 gtttagtctt aatgctacct tttatagaag gaacttctat ttactttgta gaggcataaa 180 tgagccaaat caaagtaaat gagataagaa attaatatag acatatttaa aagagaatta 240 aaaatagatt aaagcaaaac ttacctcaaa ttatcaaaaa ttgatatcca aagaggatta 300 gttgtcaact tggatcaaaa tcagatcctg aggcacaaaa ctatacacct atggcgactc 360 tagggttctt ttgcaaatca aagagtggaa tttgagagaa gactttatag gattttttaa 420 agcattggtt ttgagtaatt tgagtttgta atgactttgt aagagctttg caaagtcaag 480 gttgttttgg atgactctgg attttgtgaa ataaaatagg atttataatt tggacaattt 540 tgtgagtttt gtagtagatc tataagtgaa attttgtaga attgtgaata tagttgtatt 600 gaatatatgt tgtaaatttg agcttaatca aatagttgga ttggaggtta ttgaagttca 660 agtggattag gatcttaaaa attggatttt taggtctaat aaggttatct aagatttgca 720 acaattttct aattggattg aggtgatttt tattggagct aatagttgac ttgacttcca 780 atacttatgc aaaatttgag agtaagttaa taattcaatt aggagttatt gctactggaa 840 gatcaacatt aagatcaaag atggaggctg gctaacaccc gagtggatta tgacattttt 900 ctctcatttc gtaagttcaa ttctcttcaa atttattgtg cttgttttta actaagagat 960 tgagaggtat gtaaaatttt aagcaagatc aataatttaa tcaatagata ttgaggttct 1020 aaaattgccc taggattggt ttgaattggt taggttttga ttaggatttg tttaggaatt 1080 gattaggatt tgatttagga tttagaattt gattaggatt tggtttagga tttaggatct 1140 gattaggatt gatttaggat ttaagatttc tttaggattt tttttggatt tctttagatt 1200 tctttaggat ttctttaagg tttctttagg atttttttag gtttctttag gatttcttta 1260 ggatttcttt aggattttta agatttcttt aagatttttt tggatttttt tgatttcttt 1320 aggatttctt ttggatttct ttaggatttc tttaagattt tttttatttc ttttatattt 1380 ctttagattt ctttagaagt tctttaggat ttctttgtgt ttcttttata atttatttaa 1440 aaatttaatt gagcttgatc aatatttgat tatgtttatt aagctttaat tataatttat 1500 atatgattct attagagttg ttaggacttg ttgttgcaaa tttcttttac cttctacagc 1560 caagtgcccg gtgcattttc aagcaagact tcatgtaata tgaca 1605 // ID Copia-1_PR-LTR repbase; DNA; PLN; 170 BP. XX AC AAQX01000058; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PR_; KW Copia-1_PR-I; Copia-1_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-170 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000058; Positions 3421 3590. XX SQ Sequence 170 BP; 46 A; 45 C; 30 G; 49 T; 0 other; tgttgaagta gccagcctga acttatcgta ttctcgatat atgtcaccag atgtacggta 60 ccacgttttc catactgaag cctcataatg aatcacttca gaatttgctt cctcaaaaaa 120 catctccgtg caggtatact tagccgcctt cacacaggag cgttccgtca 170 // ID Sm2 repbase; DNA; PLN; 4290 BP. XX AC . XX DT 29-APR-2007 (Rel. 12.04, Created) DT 29-APR-2007 (Rel. 12.04, Last updated, Version 1) XX DE Sm2 is a Penelope-like retroelement. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-like elements; reverse transcriptase; Sm2. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4290 RA Arkhipova I.R.; RT "Distribution and phylogeny of Penelope-like elements in RT eukaryotes."; RL Syst. Biol 55(6), 875-885 (2006). XX RN [2] RP 1-4290 RA Gladyshev E.G. and Arkhipova I.R.; RT "Telomere-associated endonuclease-deficient Penelope-like RT retroelements in diverse eukaryotes."; RL Proc Natl Acad Sci U S A 104(22), 9352-9357 (2007)in press. XX DR [2] (Consensus) XX CC Sm2 is a Penelope-like retroelement from the spike moss, CC Selaginella moellendorffii. Its ORF2 contains homology to reverse CC transcriptases. No associated endonuclease has been found. ORF1 CC contains a coiled-coil motif. Most copies are associated with CC telomeres and are 5' truncated by addition of reverse-complement CC S.moellendorffii telomeric repeats, (TAAACCC)n. XX FH Key Location/Qualifiers FT CDS 329..2107 FT /product="Sm2_1p" FT /note="ORF1." FT /translation="MQPTLSPATAPVATMPPRRSVVPPVTTSTSPMAVPTT FT NSLSPHAPAYTPMSTLACTSVLTTTTIHTPTPSTTSPPLFATTPHTPPTFS FT ISPPVPLTFSTTPPFSMASTLPTLFSSTTSIPPPFSSPAVPSSTPFSGLVD FT LFTVLQNSAGISATGNTLPQQLPPFLAPGNALTSSSTEGLGRLDEALSAIL FT ECSIKEFMNELKSLNQAHKAVKRLTQLRDKKQFPQDLRIRVPKLEVTSHGQ FT ELLDTSIKAIHEQYLKDLLDSLLKAREAEAATLADLINHGLSQRFNDRMDD FT FVHCALQACGNAQREAVTHTLNARKHQLIAEYQRATAIGAVAYGVEESKKE FT NARKQREAAEDAARAKAETLPKEDTVKMLVQSCFDKMWKERERGIPRQHHE FT DAGRGTRSQGKRQQRTDTSLHIREAGSSKTRKVSLPSGERDVTHGRQGNEQ FT GRNVVTGTPPTHSDAPGFSSRGPLHRQSPTVLGSQPAMTGRGGQRQSRGNG FT RPPRSQPNWPSGRGRQTTPRPPPAAQQRQPTQNQKPPSPPRGQEMQPSQHH FT NNTPLHERTQRYGLGRNSPPQQRPHSPVTAVPVDRKGKAKVSGYL*" FT CDS 1633..3951 FT /product="Sm2_2p" FT /note="ORF2; reverse transcriptase." FT /translation="RYPWTAGKRAGAECGYWDSSHPFRCPGFFFKGSLAPA FT ISNRAWFPASHDWQRWPTPVSRKRSTPTVPTELAKRPRAPDYTTTSSSSPT FT TPANSEPETTFTSQRTRDAALTAPQQHPTPRTNPTLWLGKKLASTATPALS FT SYGSACGQKRQGKSFWLPLIAPHEALLHFAGNQKVSQLENRVEIGAVHNLS FT SRMLSAAEKRLLALGLSFIPNPVPLTAKKIMECLDDFQRSVRLRHSFKDSN FT SLIPEFRVPNPNFDPPPASWHMESRVARIREHLLQRLSCCKRPRSFLRGWR FT RDAVLALRHDHSIVIKPADKNLGVVVLDRTWYIQEAMRQLNDPLVYKRVES FT IPHQPMHERLLELLLKYKSCSWLDKNTAKYLITLPSPPRKACLLYFLPKIH FT KQPIRGRPIASYVGYIWEPLAKWLHRQLFGILLQQETFLMDSHTLLHDLHK FT QQLPKDCLLFTFDVESLYPSIPTREGLYRLHKFVYRNFGDSMQARFIMAAA FT GLILEHNYVEFDGSYFLQIRGTAMGSNFAVVYACLFLCSLEDEFKATSSKW FT PIYLKRYIDDGVGIWDGSKESLECWLASYGSLCNSIKITSVISFESMDILD FT IHFFKGPRFEKCRCLDSTTFQKPLNAYQYLPWNSTHPRHQKIAFIRAELRR FT YLLRESNPESFCAIRKLFYTRLRARGYPRAFLIEAFRTIHYTDRDNVLYSP FT SRKSSSNSLQAPLIFKLPYTLHSAALDVGNTLNPKQVISEVPSDSLPRVIT FT CWTRSPNLASHLVSARLPPYG*" XX SQ Sequence 4290 BP; 1123 A; 1239 C; 859 G; 1069 T; 0 other; tccaacacca ctaccacgca ctctaccagt tcaaacgtca gttccaacac cactaccacg 60 cactctacca cctcaaacgt cagttccaac accactacca cgcactctac cacctcaaac 120 gtcagttcca acaccactac cacgcactct accacctcaa acgtcagtat atgcactcac 180 gaccgagtct cctccagctt ctcctgaatt cttgagggaa ctggcactta cagaggaacg 240 acacttggct gaacgacact tggcttcacg acctgtctca gcaccactgt caacggctac 300 atggtccact gtagcatcag tgacagatat gcagcccact ctgtctccag caactgcccc 360 agtagcaact atgccgccta ggagatccgt tgtgccacct gtgaccacct ctacatcccc 420 tatggctgtg cctacaacaa actcactctc accacatgca ccagcatata cacccatgtc 480 tacgcttgca tgtacctctg tgctcacaac tacaaccatc catacaccta ctccatcgac 540 aactagccct cctctctttg ctacaacacc tcatactcca ccaactttct ccatctcgcc 600 tcctgttcca ttaaccttct ccaccacacc acctttctcc atggcctcaa ctttaccaac 660 actcttttca tcaacaactt caatcccacc acctttttca tccccagctg tgccatcatc 720 tactccattc tctggattgg tagacctctt cacagtgttg cagaatagtg ctggcatttc 780 tgctactgga aacactcttc cacagcagtt gccacctttc cttgcccctg gcaatgccct 840 cactagctcc tcgactgagg gacttggtag gcttgatgag gctctttctg ccatccttga 900 atgctcgatc aaggaattca tgaacgagct caagtctcta aatcaagctc acaaggctgt 960 gaagagattg actcagctcc gtgataaaaa gcagttccct caagaccttc gcattcgtgt 1020 gccaaagctt gaggtgacct ctcacggtca ggaacttctt gataccagca tcaaagcaat 1080 ccacgaacaa tacttgaagg accttcttga ttctctgctc aaggcacgag aggctgaggc 1140 tgctaccctt gcggatctca tcaaccatgg actctctcaa cgttttaatg atcgaatgga 1200 tgattttgtt cactgtgctt tgcaggcttg tggcaatgca caacgagagg ctgtcacaca 1260 tactctcaat gcccgcaagc atcagttgat agctgaatac caacgtgcga ctgcaattgg 1320 agcagtggca tatggagttg aggagagcaa aaaggaaaat gctcgcaagc aaagggaagc 1380 tgcagaggat gctgcacgag ccaaggcgga gacactgccc aaggaagaca ctgttaagat 1440 gcttgtccag agctgctttg acaagatgtg gaaggagagg gagcgtggaa ttccgagaca 1500 acaccacgaa gatgctggca gaggcaccag atcacaaggc aaacgacagc aaaggacgga 1560 tacctcactc cacatacgtg aagcaggctc ttcaaagaca cgcaaggttt ctctccccag 1620 tggtgaacgt gacgttaccc atggacggca gggaaacgag caggggcgga atgtggttac 1680 tgggactcct cccacccatt ccgatgcccc gggtttttct tcaaggggtc ccttgcaccg 1740 gcaatctcca accgtgcttg gttcccagcc agccatgact ggcagaggtg gccaacgcca 1800 gtctcgagga aacggtcgac ccccacggtc ccaaccgaac tggccaagcg gccgagggcg 1860 ccagactaca ccacgacctc ctccagcagc ccaacaacgc cagccaactc agaaccagaa 1920 accaccttca cctcccagag gacaagagat gcagccctca cagcaccaca acaacacccc 1980 actccacgaa cgaacccaac gctatggctt gggaagaaac tcgcctccac agcaacgccc 2040 gcactctcca gttacggcag tgcctgtgga cagaaaaggc aaggcaaaag tttctggcta 2100 cctttgattg ccccgcatga agctttactt cattttgccg gcaatcaaaa agtttcccag 2160 ctagaaaata gagtggagat tggtgctgtt cacaatttgt cttctcgcat gttgagtgcc 2220 gctgaaaagc gcctccttgc tcttgggctc tcattcattc ctaatccagt gcctctcacg 2280 gccaaaaaga ttatggaatg cttagatgac tttcaacgct cagtccgtct tcgtcattcg 2340 tttaaggaca gcaacagtct tataccagag tttcgggttc ccaacccaaa ctttgatcct 2400 ccccctgctt cctggcacat ggagtcacga gttgcccgca ttcgagagca ccttctccaa 2460 cgtctttcct gttgtaaaag acctcgatct tttctaagag gatggagacg tgatgcagtc 2520 cttgcgctgc gacacgatca tagtattgtg attaagccag ccgacaaaaa cctcggcgta 2580 gttgttctgg accgcacgtg gtacattcaa gaggctatgc gccaactcaa tgatcctctt 2640 gtctacaaga gagttgagtc gattccacat caacccatgc atgagcgcct cctcgaactt 2700 ctcctgaagt ataaatcttg ctcatggctg gacaagaaca cagccaagta cctcatcact 2760 ttgccctcac ctccacgtaa agcttgtttg ttgtattttc ttccaaaaat acacaagcag 2820 ccaattcgtg ggagaccaat tgctagctat gttggctaca tttgggagcc acttgcaaaa 2880 tggcttcacc gccaactttt tggcattctc ctccaacagg aaacctttct tatggactcc 2940 cacaccctcc ttcatgatct tcataaacaa cagctcccaa aagactgcct cctcttcact 3000 tttgatgtgg agtcgctcta cccgagcatt cccacacgtg aagggctcta tcgcctccat 3060 aaatttgtat atagaaattt tggagattcg atgcaagcac gctttatcat ggctgctgca 3120 ggactcatcc ttgaacacaa ttatgttgag ttcgatggga gttatttcct tcaaatccga 3180 ggcactgcta tggggtcaaa ctttgctgtg gtgtatgctt gcctttttct ttgttccctc 3240 gaggacgaat ttaaggccac ctcttctaaa tggccaatat atcttaagag atatattgac 3300 gatggtgttg gaatttggga tggatcaaaa gagagcttgg aatgctggtt ggctagctat 3360 ggaagcctct gcaattctat aaagatcacc tcagtgatct catttgaatc tatggatatt 3420 ctagacatcc attttttcaa aggcccacgt tttgagaaat gcaggtgcct agactccacc 3480 acctttcaaa agccactaaa tgcataccaa tatcttccat ggaactcaac gcatcctcga 3540 caccaaaaga ttgccttcat tcgtgctgaa cttcggcgtt acctcctacg agagagtaac 3600 cctgagagct tctgtgcaat tcgcaagctt ttctatactc gtctccgtgc acgtggatac 3660 ccaagagcct tccttattga agctttccgg acaatccatt atacggaccg agataatgtg 3720 ctctactctc catcacgcaa atccagtagc aatagtctac aggcccccct cattttcaag 3780 ctgccttata ctctccatag tgcggcactt gatgtgggga acaccctaaa ccctaaacag 3840 gtgatttctg aagttccatc agactcactc cccagagtga tcacatgctg gacacggtcc 3900 ccaaaccttg cttcccactt ggtttcagcg agactcccac catatggata agctaccttg 3960 gacttgccca aagctacctc ttgcaaactc ggagtggaat attcctggaa tattctgatg 4020 ctttgaaata ttttttttga ggttagctat taaacatgat gaggaacaat taggacgtgc 4080 tgcatggctg atatccatca ccatcaccgt tcacaatata ctgctgtgaa taagctacct 4140 cttgcaaagt cggagtggaa tattcctgga atattctgat gctttgaaat aacttttgag 4200 gttggctatt aaacatgata aggaacaatt aggacgtgct gcatggctga tatccatcac 4260 catcaccgtt cacaatatac tgctatgaat 4290 // ID Gypsy-16_PSo-LTR repbase; DNA; PLN; 663 BP. XX AC AAQY01000218; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PSo_; KW Gypsy-16_PSo-I; Gypsy-16_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-663 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000218; Positions 48112 47450. XX SQ Sequence 663 BP; 139 A; 178 C; 234 G; 112 T; 0 other; tgtaaggagg ccgacgacac ggcgaaggac gagacggtgg gcgcgcaacc acgctgtacg 60 acggcgttga agtagacggc agcgtgggac gtgaatccgg ctggcattgt ggtcggcagg 120 atctgctgcg cggtaccgag ggatctactg gatcttcggg cccgctggac tccgcgagtc 180 ccacgacgga gctcactttg ggttttgacg gccagcgagc aggcccgagg aacgcgcgtt 240 tggcagcaag cgcaacaagc ggtgaacgga cgaacgacag gtggacgaac ggcggtggac 300 actaacggcg acctcggggg acggctgcgg cgtgaacgac aacagagtga cgaacaggaa 360 gcacgtggct tccgagttct tcgacggctg cgacgagttg ggcaggcgcg tgtgggcgta 420 cgcccgagtg gctagaggag cgactacgga actgagtcgt gcgcgttcga cgtacacgtg 480 tatttgtagt tagtcggtgg ttgacaccgc gctagttcat ctaaataaag taggtgttgc 540 tgccagtcgg gcacgcaccg gcgcagtgtc ttacgcttcg acactgtcgg ccatccggac 600 tttcgaccgc atcagcacgg tcgcgaccaa accccaagcg tgtggggcac caaacacgtt 660 gca 663 // ID Gypsy-21_PSo-I repbase; DNA; PLN; 6325 BP. XX AC AAQY01000781; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PSo_; KW Gypsy-21_PSo-LTR; Gypsy-21_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6325 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000781; Positions 37506 43830. XX CC Positions [4315-4650] - Integrase core CC 'ACTGG' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 43..1086 FT /product="Gypsy-21_PSo-I_1p" FT /translation="MNMHDTSMPDASRTTATSLEHASFHHLSAIEWEALHR FT LAAVSGDAVIKTLLTAGTEEQQRLAAQEFMARELADLRQRVSTPTQTKNKS FT DIVKLDVSTYSGEGEGRLHLNRWFCEVDIAIEARQLSTELARTRSLLSKLT FT GRAKEWALGKLVADASCFPTMASMKADLRLAFEPPQDESVQRSAFLALKQG FT RTSMLDYIHRARHLVSCITTHPVDMATQVHVFISGMSAGYQRFYLTRKTPP FT TLDEAFAVALREDYSVTASQAFDVSRAPVPEPEPMEVDAIQQFGGRRVPTS FT SARPPTASSTRNPRPMRCYRCGKPGHRAAICRAPAPMQANVTVANDVAAPK FT NGDNQ" FT CDS 2298..3929 FT /product="Gypsy-21_PSo-I_4p" FT /translation="MIVAEDAESIAAVATSASDPASDTRTRPKGAEPKNAR FT QARYAAQSLPALEAAGNPVAPLVREFMEIFPDKVPAVLPPDRGVRHEIDLV FT PGAKYCVTRQWPLPRDQVEAIDAFFESSRQAGHVRESLSPHSSPTFCVKKA FT TGGRRIVHAFNKLNEVTIPAQTPIPRKDMVLDTMSGSTKYSAIDLMDGFYQ FT ILMREDDVPLTAVSTPSGMLWEWLVMPQGLKNAPATFNRMVSNLLRPYRDF FT APSYFDDIFIHSRTEDGMTDVEVHLQHLRKVFEVMKENKLYANLKKCIFCA FT PEIPVLGSYVSKDGVRADPEKIEAICAWPTQQDQKQLRQWLGLATYLHHYS FT KNFASTIRPLSQLLKADATWSWRPEHQAAFDAVKLSLSTAPVLLLPDHAKP FT FHVECDASDFAIGCVLVQFDDEGRERVISYQSRQLKPAERNYPVHDKELLA FT MRYALIKFRVYLLGEQTFAIYTDHASLRTVTKSPHLSQRMARWLSLFSEYN FT FVVHYKPGKTTCSQVATQLATRTTTNAPYALPKTSLLLRLQRPVRSVA" XX SQ Sequence 6325 BP; 1186 A; 2047 C; 1901 G; 1191 T; 0 other; cttggtagca cttcgctaat ccgtccaacg cccaagatcg tgatgaacat gcacgacacg 60 tcgatgcctg acgcgtcccg gacgactgcc acttcactgg agcacgccag ctttcatcac 120 ctgtcggcga tcgagtggga ggcgctacac cgcctcgcag cggtgtctgg tgacgctgtg 180 atcaagacac tactgacggc gggaaccgag gaacaacaac gcctggccgc ccaggagttc 240 atggcgcgtg aactcgctga cctccgtcag cgagtgtcga ctcccacgca gaccaagaac 300 aagtccgaca tcgtgaagct cgatgtctcc acgtacagcg gtgaaggcga gggccgcctt 360 cacctgaacc gctggttctg cgaggtggac atcgcgatcg aagctcggca gctgtctacc 420 gagctcgcgc gcacgcgctc tctcctgtcc aagctgacgg ggagggcgaa ggagtgggcg 480 ctcggcaagc tcgtggccga cgcttcctgc ttcccgacca tggcatcgat gaaggcagac 540 ttgcggctcg cgttcgagcc gccccaagat gaaagcgttc agcgctccgc cttcctggcg 600 ttgaagcaag gacgcacgtc catgctcgac tacatccatc gagcacgaca ccttgtgtcg 660 tgcatcacga cgcatcccgt agacatggcg acccaagtcc acgtcttcat ctccggcatg 720 agcgctggct accagcgctt ctacctgacc cggaagaccc caccaacact cgacgaggcc 780 ttcgctgttg cgctccgtga agactacagt gtgacggcgt cgcaggcttt cgatgtctct 840 cgggctccgg tgcccgagcc ggagccgatg gaggtggatg cgattcaaca gttcggtgga 900 cgtcgggtgc cgacgtcatc agcaaggccg ccaacggcct cgtcaacgcg caatccccgc 960 ccgatgcgct gctaccgctg tgggaaacct ggacatcgcg cggctatttg ccgcgctccg 1020 gcgccgatgc aggcgaacgt cacggtcgcg aacgacgtcg ccgctccaaa aaacggcgac 1080 aaccagtagg tgcggggcgc cctactggtc gtggaaggat cgatggttct ctggtggcag 1140 atcctcctcc tagccctccc gtgcttcatg cacaactctt tgccaccacc tccggcagtg 1200 acacgaggct gattgtgctt agcctccacg ttgacggcgc gacgcgccct cttcgcgcgc 1260 tgctggactc gggcgcaacg aacaacttcg ttcgcgccga gagcttgtcg gtgttaccgg 1320 tggacttgaa cattcgcgac gggcctggcg acatgatcgt gaagtacgct gatgggaagc 1380 cgcgaaggtc gccgcggcgc tcggcgacct tcgcgtacgg gttcgacggg ttccccagtt 1440 ccgaggagtt cttggtgatc gagctgagcg gctcgttcga ctgtgtcttc ggcatcccgt 1500 ggctcgctcg ccaccagcct gagatcaact ggctgactgg cacagtccgc ccccgggaca 1560 ttgatgtgaa tgcagtattg gcgttcctgt gcggaacgcc taaccagtgg ccgcatgttg 1620 ccgtcttgga cctcgactcc atgacccatg ctgcgcacga agcgagcgat ggcccttcgt 1680 gcgcggtggg gcgaactcgc aacctgcggc ggtcctgagc aggagcctca ggacgtgtct 1740 gacgtggccg agcatgggtt cccacgtccc gacgagcagc ggttctcgga agcagacaat 1800 gacgtggtcg agccacgtca ggacgagcag cggttctcca acgttgaaga gcgagaagac 1860 gtggttgagc gtggcctccc acacgcggtc gagcatgggt tcccgcgtgt ggtcgagcgg 1920 gagctccctg atgaagtcga cgcggtcgtg tccaatgacc cgcgtccagg cgccgacgtt 1980 gtgtcccggc gccccagttc agcgaccgtg atcgagcatg ggctctcatg ggcagcttcg 2040 gacaacactc caggtccggt tcgacgtcgc ggacgtcgca acccgcgccg tcctcgtacg 2100 gcttcggcgg actcagttga ggctgagact gaagtgatct cagtcctggt gggggacgac 2160 gcggaggcgc ctccgcgtgt acgcaacatc gaagtcgcac gtcaccgtgc gacgccgccg 2220 agatcactcg gctgcctggg ctctcgtgga aacacttcct ccgtgacctg aagaagggcg 2280 agatcgagca ggtgtgcatg atcgtcgccg aagacgccga gtcaattgcg gccgtcgcaa 2340 ccagtgcgtc ggacccagct tccgacacca ggacgcgccc aaaaggagcc gagccgaaga 2400 acgcccgtca agcccgctac gcagctcagt cgttgccggc gctcgaagcg gccggcaacc 2460 cagtcgctcc gctcgtgcgc gagttcatgg agattttccc ggacaaggtt ccagccgttc 2520 ttccacccga ccgcggtgtt cgacacgaga ttgaccttgt gcccggtgcg aagtactgcg 2580 tgacgcggca gtggccgctt cctcgcgacc aagtcgaagc cattgacgcc ttcttcgaga 2640 gtagccggca agccggccac gttcgcgaga gtctctcgcc gcactccagt ccgacgttct 2700 gcgtgaagaa agcaacgggc ggcaggagaa tcgtccacgc cttcaacaag ctcaacgagg 2760 tcaccatacc tgcgcaaacg ccgatcccga ggaaggacat ggtgctggac accatgtccg 2820 gcagcacgaa gtacagtgcc attgatctga tggatggctt ctatcagatc ttgatgcgcg 2880 aagacgatgt gccgctgaca gcggtcagca cgcccagcgg gatgttgtgg gaatggctcg 2940 tgatgccgca ggggctcaag aacgcccccg ccaccttcaa ccggatggtg tccaacttgc 3000 ttcggccgta ccgagacttc gcgcccagct acttcgacga catcttcatt cacagtcgaa 3060 ccgaggacgg catgacggac gttgaggtcc acctacaaca cctgcgcaag gtgttcgagg 3120 tgatgaagga gaacaagctg tacgccaact tgaagaagtg catcttctgc gctcccgaga 3180 tccctgtgct cgggagctac gtcagcaagg acggtgtccg cgccgacccc gagaagatcg 3240 aggcaatctg cgcgtggccg acgcagcagg accagaagca gctccggcag tggctggggc 3300 tcgccacgta tcttcaccat tactcgaaga acttcgcttc gacgatccgc ccgctatctc 3360 aactcctcaa ggcagacgcc acgtggtcgt ggcgtcccga gcaccaagcc gccttcgacg 3420 cggtgaagtt gagcttgtcc accgcgcctg tgctcttgct tccagaccac gcgaagccct 3480 tccatgtcga gtgcgacgcg agcgacttcg cgatcggatg cgtgttggtg cagttcgatg 3540 acgaaggacg cgagcgggtc atcagctacc agtcgcgtca gctgaagccg gcggaacgga 3600 attatccggt ccatgataag gagctgctgg ccatgcgcta cgccctcatc aagttccgcg 3660 tgtatctcct cggcgaacag accttcgcga tctacaccga tcacgcatcg ttgaggacag 3720 tgacgaagag cccccacttg tcccagcgca tggcgcgctg gttgtccctg ttctccgagt 3780 acaacttcgt cgtgcactac aagccgggga agactacgtg cagtcaggtc gccacgcagt 3840 tggcgacgag gacgacgacg aatgcgccgt atgcactgcc gaagacgtcg ctgctgttga 3900 ggttgcagcg accagtccgc tccgtggctt gatcgtagac gcgtacaagg aggacgcgtc 3960 ctgcttggag ctgatccagt tcctgcgaga ccctggtgcc gtggcgaagc gcaagctgtc 4020 tcaacgcagc cgctcccgtg tcgaccgcta ctcgctggac ggcgagttgc tcatgtaccg 4080 cgtcgaccgt gaagatcccc gcgcatcgtc gttcctctgg acgacgatct ccgagctcgg 4140 cagatccacg agttccatga cacgccgagc ggtggccacc tcggacgcga gaagacgttc 4200 gcgtcgctgt ccagagactt ctactggccg catatgtaca agtgggtccg gaaatgggta 4260 cgctcctgcg aagcgtgtca acgcgtgacg ccgaatccgt ccaagcaggc tccgcttcga 4320 tctctcccag tcgccacaga cgcatgggcg tctgtcagca tggacttcgt cttcgggctg 4380 tcccgagaca ctcaagggcg cactgacgtg cttgtcttcg ttgatcggtt cagcaagatg 4440 ctccatcttg ctcctgttgc tgccagcatc acggcgaagc aaaccgccgc gatcttcgtg 4500 gacgtggtgt accgtcacca cgggcttccg tcctccatcg tatcggatcg cgaccctcgc 4560 tttacgtctg ctttctggcg agagcttttt cagttgctgg ggacgcggtt gtgcatgtcc 4620 accgtgtcgc acccggagac agacggccac tgagcgcgcc aaccgtattg ttgaagacat 4680 actacgcagc ttcgctacgt cgttcaagtc gtggagcacc ttcctgcccc tggtcgaatt 4740 cgctctcaac aacgctgtcc acgcatcgac cgggctgtcc ccgttcttcg tcaacttcgg 4800 tcgccatcct ctcgttccag cgctccttgg tgtggagcgc tctgagactc cggctggtcg 4860 cgctgctgaa gacgcgggcg atctcgcgtc actcgttccg gatgaagaca ttgctgtaga 4920 ccccgaccca ggccaggctg agcgtcgtgg ccccgtaccc gatgctgtct ccgcgttgtt 4980 acatggcgtc accactcgtc gaggctctaa cgctccagca gtcgaagtac gcacacttgc 5040 cgccacgcgg gcggcacacg agagaccacg cgccaacccc gaacgagctt cgcgcacacg 5100 tgccgctagg agggcggcac cttcggacat cgcagcttgg acttcgcgca cgctgattga 5160 cccgatatca cgtcgggtcg tcgattatca agacgcgcaa gaggcggcga cacctgccgc 5220 gccggttcct gccaacttcg atccgctccc agcgacgcag ccccaagaca ctgcggctgt 5280 ccgcgacttc ctgcagaaac gtgagtcggt tgtgcgttat gtacgcgaca ccatcgcggc 5340 ggcggtggac cggcaaaagg aatatgccga tcgacgaggg cgacgacatc tggagacgtt 5400 cgccgtgggc gatcaggtac tgctctctac gacgggcatg tcgccaagtt tggtgacgga 5460 cttgggcgcg aacgagattt attggaccta ttaaagtgac gaaggtactc ggcgacgcct 5520 acacgctgca gctccctacg gcactccggc tgcaccctac gttctaagtt ggccgactgc 5580 gacgatacca tcccgccgcc attcccggtg gcgccgatga acatgcccaa gtcgatcaag 5640 acgctgcgcc atcgcagcgt cagcccgagg ttcgcgcatc tgcattccag cgcgaccgtc 5700 ctgctcccct agtggacgct gctgggaacc agcgtcacat tgtcgaagcc attctcaacc 5760 acgacgacca ccgagatgca ccgcagcgcg cacgcatgga tcgcggcact cgtcgccgcg 5820 agggagagat accttcgcac cgccggtatc tggttcgatg gcttggcccg atggacgaca 5880 gctgggagcc acgcgaggtc gtactcgcag atgtccccga ctgcgtggcg gcgagccgtg 5940 cctaactcaa cgagagtctc gcaagaacgg actgcccagc ggcgatgctc gacttcagac 6000 gacggacgac cttcggtgtt ccaggatccg cggcgacctg acccacggtg gagtcacggt 6060 gcgtaccacc gcgacggact cgcttcatgc cacgccagcg ccagacccgc tgcaccaaga 6120 tcgctccgtt gaagcccacg ctgctgctgc ggtcgcgctg cagccggccc ttgatgacgt 6180 ccgagacact gctgcgctgc tttactcact tcgcgcgcgc tgtcggcacg cgcttgccaa 6240 gtagcatcac gtccgcctcg cgaagccctg cagttccttt ctggagttta gatatgtgta 6300 tgttccaatc ttgagtaggg ggtgg 6325 // ID Gypsy-46_PIT-LTR repbase; DNA; PLN; 638 BP. XX AC AATU01003494; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-46_PIT_; KW Gypsy-46_PIT-I; Gypsy-46_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-638 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003494; Positions 2 639. XX SQ Sequence 638 BP; 122 A; 153 C; 172 G; 191 T; 0 other; tgggttgtat tgctgcattt tacatatgag aacgagatga gcatggatac tttgggttcc 60 aatttggaag agttgttacg agacgagatt gtctggaacg agacaaggtt ggaacgaata 120 atttggaacg gcgcgtctaa cattgatgga acgatggtga tttgtgaaag attgtggaac 180 tataagaagt ttagggacgc aaaattattc tgaggcaatg aactgatagt cggacgacta 240 ctactcgcgt tagatggaag actacttttt ggtggctttc tctttggcgg ctggagcttt 300 ctcgggaaca gctttctcgt tgtctccttc gtcgtcagcc tccgccttgt tgtcttcgtc 360 ctcttcgtcc tcggcctcct cggcctcttc gtcgtcctca accgcttcgt ctccatcttc 420 tccgtcgtca gcgtcggctt tgacttcctt agagtcggta acagtggagg tctcgacagc 480 agcggcagga tcggcggctt tagtctcgtc ttcgtcctcc tcttcgagat cggaccattc 540 ggcacgcttg acctccgtct tggtcggacc acggacttcg ggaagttggt acgtgccatt 600 cttcaactct gtcgcgacgg taagctgggt ctgcttca 638 // ID Copia-21_PIT-I repbase; DNA; PLN; 4813 BP. XX AC AATU01000203; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-21_PIT_; KW Copia-21_PIT-LTR; Copia-21_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4813 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000203; Positions 2733 7545. XX CC Positions [1829-2347] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 8..2731 FT /product="Copia-21_PIT-I_2p" FT /translation="MSPRPPTLNYATMKWNSDMNFNGKNYAPWKARIKTLL FT QAKRLWGIVTRTELPPRRDARPDVVDSFWSREHEATAFLMTTLSDEMVIAV FT SNKTCAYEIFELLEKTYEPRNWGSLCALREQFVTLKYKDGKDMLPHINELK FT TLAGRLANQGKPVDDTEKVCQLLSSLPSSWDAFKSMYHIQESPISWSSMET FT NVMAEAARRVATGSQMIETSAMAANAILQQESQKPNTSRRLKGFGRSGRKS FT EGPGGQDGDKKHGRHSKGGECHYCHQEGHYKRDCPMRKRHRSEQDGGVSAD FT AAVRVVDKTEHDDHHAPAAAAAEVWGLAVLVTSPRDLSEASANSSDSDTVS FT ELLDSAASSADTMSTTSSDEEVGDWLRLCAWDVSGAYFHGQLETTETNVSG FT SASVQLVAEPERAEAATALSQTPSHDDTWIIDSGCSQHICFTRSMFDNLRL FT CGGTVTVANNATAPIQGVGTVTIHVKDSENKLQELELTNVLFLPGLRKNLI FT SVTQLALKGVAFDFHTTPGKVILQLGSKTLTSESENGVCVLKSMNKEQVAL FT YVFPRLTIDLAHRRFGHASKSVLAKMLAKKMIMGMKVVPSTSEDAGLCDAC FT QLGSKKRRSFPSAPRLGVLECNDVVHSDICGPIEVSSLTRKRYVLLFVDVF FT TRYCHVYLLEHRSECFDCLVRHKAAVETHHNRSVRKIVSDNGGEYLSDQLK FT NFCELNGISQHTTSSYTPEQNGMAEVRFRILFNKVRTMLIDSNAPKQLWAE FT ALLSVVYLQNRTMNASTQRTPFEAWYGFPPDVSHLRVFGSLAYVYLPTKTV FT TTSTKASGRSNKRQKLDYRSVRGIFVGYAPQQKAWKMLDCSSGKILVSCHV FT SFDETFSPAAEELRRQEFRLLSAHCAVDIPDRRSAKQISYSTVRNRRKTSL FT RHVI" FT CDS 3070..4554 FT /product="Copia-21_PIT-I_1p" FT /translation="MASLKSNKTWTLMPLPPRKRALSCRWLFKVKYNSDGS FT IERHKARLVVIGCQQVKYIDFDEIFAPVVRLESLRVLLAIACIENLECHQM FT DIETAFLNGNLDEEVYMKQPQGMEVDGKEDWVCKLHKSLYGLKQAPRAWHK FT ALTSFLVRSGFEKLTCESCIYIRRSRCELEIVAIYVDDLLLLCKTTNTMAK FT MKETIKEEFKAKDLGEVSFILGLKVTRDREARKLWINQQNNVDAILKKFNM FT EHGAGVATPTAAGKKLTKLQAPTTEEATAKMLKKPFRQAVGSLMYQMIGSR FT PDMAFALQDVSRFLANYGESHWEAVKRCIRYLKATREHGLEFSGDSVVLRA FT FTDSDYAACEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALA FT HCTREVLFLRQLLKELGYEQTAIVIHEDNQACIAIAENPSHHSRVKHIDVR FT YHFIREHVQLEEVTLQYVVSKENVADTLTKGLPKEQFDYLREVMNVKSMR" XX SQ Sequence 4813 BP; 1287 A; 1112 C; 1334 G; 1080 T; 0 other; ataggttatg agcccaagac ccccgacgct gaactacgca acaatgaagt ggaactcgga 60 tatgaacttc aatgggaaga actatgcccc ctggaaggct cgcatcaaga cactgctcca 120 agccaagcgt ctctggggca tagtgactcg cacggagctc cctccgcgtc gggatgcccg 180 tcctgacgtc gtcgactcgt tttggagccg ggagcatgaa gcgaccgcgt ttctcatgac 240 aacgctgtcg gatgaaatgg tgattgcggt gagcaacaag acctgcgcgt acgagatatt 300 tgagctgctg gagaaaacgt acgagccgag aaactgggga agtttgtgtg ctcttcgtga 360 gcaatttgtg accttgaagt acaaggatgg caaagacatg ctgccacaca tcaacgagct 420 gaagacacta gccggacggc tggccaacca aggcaaaccc gttgatgaca cggagaaagt 480 ttgtcagcta ctcagcagtc tgccaagttc atgggacgca tttaagagca tgtaccacat 540 ccaagagtca ccgatatctt ggagctcgat ggaaaccaat gtgatggcag aagctgctcg 600 gcgggttgcg actgggagtc aaatgattga gacctcagcc atggcagcca atgcgatact 660 gcaacaggag tcccagaaac cgaacactag tcgtcgtctt aaaggatttg gacggtctgg 720 acgtaaaagc gaaggtccag gcggccaaga cggagacaag aaacacgggc gtcattccaa 780 agggggagaa tgtcactact gtcaccaaga agggcattac aagcgagact gcccaatgcg 840 gaaacgccat cggagtgaac aagacggtgg cgtgagtgct gatgccgctg tacgcgtggt 900 tgataagacg gagcacgacg atcaccatgc ccctgctgct gcggctgcgg aagtatgggg 960 gctcgcggta ctggttacca gtccaagaga cctgtccgaa gcctcggcta acagctcgga 1020 ctccgatacc gtctcggagc tgctggactc agcggcgtcc tctgcagata cgatgtctac 1080 aacgtctagt gacgaagaag ttggtgactg gcttcgtctg tgtgcatggg atgtatcggg 1140 cgcttacttc catggacagc ttgagacgac cgagacaaat gtgtcggggt cagcatcggt 1200 gcagttggtg gcagagcccg aacgtgcaga agctgcaact gcgctgagcc aaacccccag 1260 tcatgatgac acgtggataa ttgacagtgg atgctcacag catatttgct tcactcgcag 1320 catgttcgac aacctaagac tgtgtggagg gacagtgaca gtggcgaaca atgcgactgc 1380 cccaatacaa ggcgttggaa cggtaacaat ccacgtgaag gactcggaga ataagctcca 1440 ggagctggag ctgaccaatg ttctcttcct ccctggactg cggaagaact tgatctcggt 1500 gactcagctg gcgctgaaag gggttgcttt tgacttccac actactccag gaaaggtgat 1560 cctacagtta ggcagcaaga cgttgaccag tgagagcgaa aatggcgtgt gcgtccttaa 1620 gtcgatgaac aaggaacagg ttgcactcta tgtttttcct agactcacga tcgatttagc 1680 tcaccgacgc tttggccatg cttccaagtc cgttcttgcc aaaatgctgg ccaagaaaat 1740 gatcatgggc atgaaagttg ttccatcaac atcggaagac gctggtctct gtgacgcgtg 1800 ccagctagga agcaagaagc gacgctcgtt tccttcggcg ccgcgacttg gtgttctgga 1860 atgcaacgac gtcgttcaca gcgatatttg tggtccgatc gaggtctcgt cgttgactag 1920 gaagcgttac gttcttcttt tcgttgatgt atttacgcga tattgccatg tttacctgct 1980 ggagcaccgt agtgaatgct ttgactgctt ggtacggcac aaagctgctg tggagaccca 2040 ccacaatcgg tccgttcgga agatcgtcag tgacaatggt ggtgaatact tgtcggacca 2100 gctgaagaat ttttgcgagt taaatggaat ctcgcagcac acaacatcgt cttacacgcc 2160 ggagcaaaac ggaatggcag aggttcgttt tcgtattctc ttcaacaagg tgcgcacaat 2220 gctcatagac agcaatgcgc caaaacagtt gtgggcggag gctttgttgt cagtcgtcta 2280 cctccagaat cgtaccatga atgcaagcac acagcgaaca ccctttgagg cctggtatgg 2340 ctttccacct gatgtctcgc atctacgggt atttggatcg ctggcgtatg tgtacttgcc 2400 aactaagaca gtgacgacat cgaccaaagc gagtggacgt tccaacaagc gtcaaaaact 2460 cgactatcgc tcggtacgag ggatatttgt tggttatgcc cctcaacaaa aggcttggaa 2520 aatgttggat tgctcaagcg gcaaaatact ggtatcgtgc cacgtttcgt tcgatgaaac 2580 tttctctcct gcagcagagg aattgcgtcg ccaagaattt cgtttgttaa gtgcccactg 2640 tgcagttgat ataccagatc ggcgatcagc gaagcagatc tcctattcta cagtcagaaa 2700 ccgacggaag acaagccttc gtcacgtgat atagctttgt tggaagactt cgtcagctcg 2760 ttcgacatat ccgaggtgaa tctagctcaa gtgggtccgg ttcttcggga ctacgaccgc 2820 gaggcgtgta ctatagtgtc tggaatctca ccacaagtgc ttaccaagag acctgccgcc 2880 aaaaatccat tgctacatgc tgttcggaag cagcaagaag ctgctgcttt ggttgctcta 2940 gagaatgttg cagcaaaaac gacagtcgga gattttgtgg cttgtggtat tgcatcggaa 3000 ccgaagacgt acagtgacgc tgtagcaagg ccggatgcac gtgagtggaa agaggcgatc 3060 cacaaagaaa tggcttcgct gaaatcgaat aagacttgga cattgatgcc tcttcctcca 3120 agaaaacgag ctctctcctg cagatggctg ttcaaggtca agtacaacag tgatggcagt 3180 atcgagagac acaaagctcg tttggttgta atcgggtgtc aacaggtcaa gtacattgac 3240 ttcgatgaga tttttgctcc cgtagttcgt ctcgagtcac tccgagtact gcttgcaatt 3300 gcatgcattg agaatctcga atgtcaccag atggacatcg agactgcgtt cctaaacgga 3360 aacctggatg aagaagtata tatgaagcag ccacaaggaa tggaggtcga tggaaaagaa 3420 gattgggtgt gcaagcttca caagagccta tacgggttga aacaggctcc tcgtgcctgg 3480 cataaggcac tcacatcgtt tcttgtgaga tctggctttg aaaagttgac gtgtgagtca 3540 tgcatctaca ttcgaagaag cagatgcgag ttagagattg ttgcaattta tgttgacgac 3600 ttattgctgc tgtgcaagac caccaacacg atggcaaaga tgaaagagac aatcaaagaa 3660 gagttcaaag ccaaggacct cggtgaagtg agcttcatcc tcggccttaa agtgacacgt 3720 gaccgtgaag cgcgaaagct ctggataaac cagcaaaaca atgtggacgc catcctcaag 3780 aagtttaata tggagcacgg agctggtgtt gccacaccaa cagcagcagg caagaagctg 3840 acaaagctcc aagctccaac aactgaggag gcgacagcga aaatgttgaa aaagccattt 3900 cgacaagcgg tagggagctt gatgtaccag atgatcggca gtcggccgga tatggcgttc 3960 gcactccaag atgtgagtcg attcttggca aactacggag aatctcattg ggaagcagta 4020 aaacgatgta ttcggtacct gaaagccaca agggaacatg gcctcgagtt cagtggcgac 4080 tccgtagtct tgagagcatt tactgactcg gactatgctg cttgtgagga tgatcgccga 4140 tctgtctcgg gatatgtgac catgattggt aattgcacag ttacctggag ctctcgtaag 4200 cagcgcattg tggcacaatc aacagcagag gcagagtatg tggccttggc tcattgcact 4260 cgagaagtat tgttcctacg gcagctactt aaggagttgg ggtatgagca gactgcgata 4320 gtgatacatg aagacaacca agcctgtatt gccattgcag agaacccgtc tcatcactcc 4380 agagtgaagc acatcgatgt gcggtatcac ttcatccgag aacatgtgca gctcgaagaa 4440 gtaactctgc agtatgtggt gtcaaaagaa aacgtcgcag acacactgac aaagggactg 4500 ccaaaagaac agtttgacta tctccgggaa gtgatgaacg tgaagtcgat gagataatgc 4560 ctagtgccag tgtgtatcat acagtcgaag cggatatgct acatgaacaa ctgggctgga 4620 aggtgctcat gcgatttgaa gaagtctgta caaggtgcag ccgtcaagaa cctaggaagt 4680 cgtgcttgga acagctccga cagacttgga ggtggtttga cgagatccaa ggatcggggg 4740 agcttggcga tgggtggtga tgtatcgcag caaggcagta caatgtagca ttgcgattcg 4800 cactgcgggg gag 4813 // ID Gypsy-19_PR-I repbase; DNA; PLN; 11546 BP. XX AC AAQX01002269; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PR_; KW Gypsy-19_PR-LTR; Gypsy-19_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11546 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002269; Positions 2078 13623. XX CC Positions [7129-7608] - Integrase core CC 'ACAA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 10564..11544 FT /product="Gypsy-19_PR-I_3p" FT /translation="MSTEGVLMAAVDTVLRYKKELLWLCIGAVLWTITEPI FT RSVVVRLFEVVGFAVYKWTGLATACLRRYRSYVRGRMIQEQPWNSRWWKTY FT EALWATPMVVLQARCEHEMGLGRLLFKWCDAFHAYWSVFLPESIQSGCSGT FT VKYWQGTLVGVRRSVDRAWMLLQVLGGVTVLVFYSMFYAVLFVYELMEWAC FT QGPPGVLAVVVVVDYLVVNSDEVGVRFRTVAAWDVVVLAVVVTSHLWRWYE FT ASADGRSPMKMAKDGYADWQRRCEELNQAQRLSEAFWEMDGGSGSASRRPV FT RTRSGLVAEQRALHELMQADRDAASRRGRRVFVRE" FT CDS join(301..2220,2224..8391) FT /product="Gypsy-19_PR-I_1p" FT /translation="MVEQGDSREEGDAEYEERPVNEGYEGDTSSDEEVGEQ FT DDEEEEKRPTLAGRRTEQSSVMRELMEEEKEDPDRQVKIEPGVKEEGELRA FT GAEQGGGRPSERRRSDRDRSQDPDQAYDSEEYGSYGEEEYVGEFYSDDEVP FT EIEDVPLARSPSGFIPRYSGPEARQPNRPVFGWSYWSSQPTVARTGGRRSS FT GEELGTRKSLARSKGPVNRAYAGATGTPNKNSGTHGTRGQQVKSTASKNRP FT RQVSQNRPTKQGPVPTARTRQRTVASRSSLATSAYGLSTLVSNAVKVLPMF FT YSDTATVEKARDFWDMFAVHTDGLPDSSRLLVFRQKLKGREAERWWGNSRI FT KTFDTLKLRFHNQFLSRTADELWERLETTKRERGESVEEWGDRVSDLCESL FT NYPNPQMRYQLFRRGLRNKRMLATLDSGPASDIPEACEWLMFKDMYRPVEE FT DEEFSDEGPSKKKEKETPVLASVDALAQRLQSFMDQQQLWQQQLQADRYHP FT SRSPRNRSPVAAVTTGPPPMPTVQQGSGRRLRGISMADDNRTQDGIPVCGR FT CNYQGHGRALCKRQSMTCNICGAYGHIRTECESAPSGGSRTSFGNTGRPSS FT KCFFCEEIGHGVAACPTLRSMKEMMPRNGGSVSVPGHAGNSQRWREGGEER FT VNPSSCLVSGSKDKRERNDEVNAVVEVKEEDENGTVKAGTVEITRSVEREE FT RIAKSILEDDEGGTPAIVPAEGKIATASKGTGMNVLPATAVKETKRVNVAI FT ETTTEREVTPVAGKKKFEKMAVDEKKEVDPVLARTVTISEKKPVVRPTVQP FT RSILRVGGRFYVPRDEDVWSSEEEDWDDGFDDFGETLFSKWTLESEREEEP FT CASVTEKSKDEGLSEKTIDAEEDEPRYARLFTDCELDALEECKPGSEATVL FT AGTETLPEAEEYEKELEDRLYPLDEVEIKRRMKQNADSAKEPSLGDMARYL FT DIPLDVLERTRTASLDGTTSPEYWQDWFRDTLESSEEAKRANRDFRKAETV FT PSAVAASADNVEVREGKVSIADEGVSSKSSGRDGNEGTVGTYVEELNEKLT FT DERTVLENVLLVTDAEASSADEFMTGLLNRKVVNPAAVRKIARVAVYRLLK FT EELERARVEMRGSILPPVDVPPLRDKMPCLDFVRLHWYADRVYEELGLDGD FT FWIPVISYAKTYFADNGSSIWKALVNRPGRLNSNSFRRRQRRRRSRKPLCF FT DCSTLYGKSAEELGSVLLRPEREEDVSHYVQMISPCRPFTSRAKRTGLAET FT VTVNLPRGFGIQGGEEEVEPLRVEKSGRRVVCSVGSYEALSGGFIDCLPSH FT MLADTGATLSLVDKLVMRRLGRSTERLEPYDGRVNSSSGHPVRIRGWTSLP FT VRLGSMEISLRVLVAHNLHVDAILGVDALGAFGAVIDVAERTMTLKLTGEV FT LSLGAAVVHDSFMATMATSVRLPPHGQALVTTEVVGEVDDQSTVLIEGSLG FT LPPTLCVARSLCTIEKGKVIVEICNATTDEIWIRKGTVVASTSVIPESAFS FT FEKLRADDEPVLEIVPAEDRPPDTVKSVAEEPTERVAQKERASKPEVPPDK FT GGNMKADFSQSKLSAEQKALFQTELNRFDSLFVESSKAPGRTDLLNFRIDT FT GPNAPIKQQPYRVSVAEGEVMEAEIQQYLELGIIRPSISPWASPVLMIRKP FT DGGIRFCIDYRRLNSVTVKDCYPMPLIDDILDVLGDAQLFSTMDIASGYWN FT VPMDEDSIAKTAFTCKYGLYEWMVMPFGLCNAVPAFERLMETVLVDLKWRI FT CLVYLDDCVIFSKDFPSHLVRVRQVLTRFQQAGFKLKMKKCHWGRNQVAFL FT GHIVTPTGILPNPEKVKAVMNVARPQDVHGIRSFLGLTSYFRRYIPGYASI FT SAPLERLKVKDAPFDWNADCEAAFRQLKRALVKPPILIYPNSKRRFKLFVD FT SSRYAVGACLMQEANGRDRVVAYASKLLTGSQKNWINKTDGISEIECWGVV FT WATRKFRCYLDKREFDLYTDHQALTWVFNPGNRTTNAKLARWAMELSNLQF FT KVQHKPGTMMGHVDGLSRLPTNSVNALTLADLLNPVEIADNETLNLVGEPH FT EPEGLSGGPYEGDIDTEEKREESDEEQADVNHGPGEDGPGLDASCPSVDMF FT GLDSEQFWMEQQSVSWIKALVAFLINHALPLDPFLRARVVKLAPKFDASGG FT LLMRRVNLPARVGPARSLTVPVIPLPYVQTVLHFCHSDLLSSHLGLTKTLE FT KVRRHAYWPGWRKDVAEYIRECNKCGSGKGHRPWNAGLMQRMPVVDLTGPF FT SLLVVDAIGPLPETDRGNKYILVFVDYFTRWVEAFAVNRLDSVTFVEVMVN FT GVVSRHGVPARLLSDNGSNFTSEVAKSFYQTLGIKKLYGAAYHPQTQGLVE FT RFNGTLIGMLKMHVSEAQTDWDVYLPRVLFAYRTAYHEALGDSPFFSLYGR FT DPVLPLDVAFLNLGKKWRSNEVARYRRELNRSLKDSRHLVERQLVKAQDRH FT ERRLRGQVEVKYAEGDQVWVYQPFRAKRGEVRTKKLAFSWHGPYRVIAKVG FT ENAYRIDVPTHPAKVVPINANRLKKYRGRWTRPYADDVPEGIEENEEAEDG FT PLEGSDLPPSSFTERLTVGRGDTVIVGVDSPLLEVVAKRTVDRTVEYLALT FT ANYETFWLSRVALMPEYADLVTAFEKAERAKGRLPALRRSARLADANAEVD FT DADLLMM" XX SQ Sequence 11546 BP; 2640 A; 2645 C; 3671 G; 2590 T; 0 other; cgtggtggag aagcagggta cggtttacct gccgtgaagt gagtagagct ggggagtatt 60 ggtcgagcgt ccggacgtgg ataggaggga ctcatccttc gccttgaatt gggtgcgtgc 120 aaagtcaagc agcacagttt cgtcggccgc gctagaagta agcgttggag gccgcacgac 180 aaggcgtgaa aggggtgatc ttccgtgcca gtggacggcg tgaagagtac ggtctcggag 240 accaaggcgc agagcccgcg cgcagtgtga aattggaatt gaaattggag aaaggtcgaa 300 atggttgagc aaggtgatag tcgagaagaa ggggacgctg agtatgaaga gcgtccggtc 360 aatgaaggat acgaaggaga tacctcgagc gatgaagagg ttggagagca agatgatgaa 420 gaggaagaga agcggccgac gttggccggc cgacggacgg agcagtcgtc cgtgatgcgc 480 gagttgatgg aagaagaaaa ggaagacccc gataggcaag tcaagataga acctggggtg 540 aaggaagaag gtgagctccg cgcgggtgcg gagcagggcg gtggtagacc gtccgagagg 600 cgaaggtcgg atcgagaccg gtctcaggac cccgatcaag cgtacgactc cgaggaatat 660 ggcagttatg gggaagagga atacgtggga gaattctact cggatgacga ggtgccggag 720 attgaggacg ttccgctggc ccgcagcccg agcggtttca tcccgcgata ctcaggaccc 780 gaggcgcgtc aacccaaccg tcctgttttt ggttggagct actggagctc gcagccgacc 840 gtggctagaa ctggaggccg tcgctcctct ggcgaggaac ttggaacaag aaagtctctg 900 gcgagatcga aaggaccggt taaccgtgcc tatgcgggtg cgaccggtac gcctaacaag 960 aatagtggaa ctcacggtac tcgtggtcag caagtgaagt ctactgcgag caagaatcgc 1020 cctcgtcaag tgagtcaaaa ccgtcctact aaacagggac cggtcccgac tgcacgaacc 1080 aggcagcgca cggttgctag ccgatcgtct ctggcgacta gtgcctacgg cttgtcgacg 1140 ttggtgtcca atgcggtgaa ggtgttgccg atgttctatt cggacacggc tacggtggaa 1200 aaagcgcgtg acttctggga tatgtttgcc gttcacacgg acggtttgcc tgacagttca 1260 cggttgttgg tcttccgcca gaagctgaaa ggacgtgaag cggaacggtg gtggggtaac 1320 tcccgcatta agacgtttga tacgctgaag ctgcggtttc ataaccaatt tctcagccgg 1380 acggctgatg agttgtggga acggttggag actactaagc gtgagcgtgg tgagtcggtg 1440 gaagaatggg gagaccgtgt ctcggacctc tgtgagtctt tgaactatcc gaaccctcag 1500 atgaggtacc aactattccg tcgagggctt cgaaacaagc gaatgctcgc tactttggac 1560 tcgggcccgg catcggacat cccggaagcc tgtgaatggc tgatgttcaa ggatatgtat 1620 cgtcctgtag aggaagatga agaattttcg gatgagggac cgtccaagaa gaaggagaag 1680 gagacgccgg tgttggcttc cgttgacgct cttgcccaga ggcttcagtc cttcatggac 1740 cagcaacaac tgtggcagca gcaattgcag gcggaccgat accatccgtc ccggtctcct 1800 cgaaaccgtt ctcctgtagc ggctgttact accggtccgc ctcctatgcc tacagtacaa 1860 caaggaagtg gtcgccgact tcgtgggatt tcgatggctg acgataaccg tactcaagat 1920 gggattccag tatgtggacg atgtaactat caaggtcacg gtcgcgccct gtgtaaacgc 1980 cagtcgatga catgtaacat ctgtggtgcg tacggtcata tccgtactga gtgtgagtcg 2040 gcgccgagtg gtggaagcag gacgagtttc gggaatacgg ggcgtccgtc ttccaagtgc 2100 ttcttctgcg aagaaatcgg tcacggtgta gctgcatgtc ctacgctacg ttctatgaaa 2160 gagatgatgc cgcggaatgg tggttccgtt tcggtccctg ggcacgcggg caatagccaa 2220 tgaaggtggc gtgagggagg ggaggaaaga gtcaaccctt cctcttgcct ggtgagtggc 2280 tcgaaggaca aacgtgaaag aaacgacgaa gtaaatgcgg ttgtcgaagt aaaggaggag 2340 gacgagaacg gaacggtcaa ggcgggtacg gttgaaataa cccggtctgt tgaaagagaa 2400 gagagaattg cgaagtcaat actagaggac gacgagggag gtactccggc tatagtgcct 2460 gcggaaggaa agattgccac agctagtaag gggacgggga tgaacgtctt accggctact 2520 gctgtgaagg aaacgaaaag agtgaatgtc gcgattgaga cgactacgga aagagaagtt 2580 actccggttg ctggaaagaa gaaatttgag aagatggcgg ttgacgagaa gaaggaagtc 2640 gatcccgtat tggcccggac cgtgacgatc agtgaaaaga aaccagtagt ccgtcctaca 2700 gtgcagccga ggagcatact ccgagttggg ggtcgttttt acgtgccccg tgatgaagac 2760 gtttggtcaa gcgaggaaga agactgggac gacgggtttg atgactttgg ggagactctt 2820 ttctcgaaat ggacgcttga atcggagcgt gaggaagaac catgtgcctc ggtcacggag 2880 aagtccaagg acgaggggct ctcggagaag acgattgatg ctgaagaaga cgagcccagg 2940 tatgctcgac tcttcactga ctgcgaattg gacgctttag aggaatgtaa acccggttcg 3000 gaagcaaccg tcctggctgg aactgagact ttgccggagg cggaagaata tgaaaaggag 3060 ctggaagacc gattgtaccc tctggacgag gtggagatta aacgtcgaat gaagcagaat 3120 gcagacagtg ctaaagaacc gtccctgggg gacatggccc gatatttgga tattccgttg 3180 gacgtcttag aacggacgcg aactgcttct ctggatggta ctacgtctcc tgagtattgg 3240 caggactggt tccgcgacac gcttgaaagc tctgaggaag ccaaaagagc aaaccgtgac 3300 ttccgaaaag ccgaaactgt tcctagtgcg gtggcggcga gcgctgataa tgtcgaagtg 3360 cgtgaaggca aggtgtccat cgctgatgaa ggtgtaagct cgaagagctc cggaagagac 3420 ggcaacgagg gaaccgtcgg aacctatgtg gaagagctga acgaaaagct gacggacgag 3480 aggacggttc tcgagaacgt attactggtt accgacgctg aggcgtccag tgcagatgaa 3540 tttatgaccg gtctactaaa tcgaaaggtg gtaaacccgg cggcggtaag gaaaattgct 3600 cgagtcgctg tttaccgttt attgaaggaa gaattggagc gtgcgcgcgt tgagatgcga 3660 ggatcaatcc ttccacctgt ggatgtcccc cctctgaggg ataagatgcc ttgtttggat 3720 ttcgtgcggc tacattggta cgctgaccgt gtgtatgaag aacttggtct ggatggggat 3780 ttttggatcc ctgtaatttc ttacgcgaag acctactttg ctgacaacgg ctcgtccatt 3840 tggaaggcgc tggttaaccg acctggacga ctgaattcta atagtttcag gcggaggcaa 3900 cgaaggcgtc ggtcccgaaa accgctgtgc tttgattgtt cgactctata tgggaagtcc 3960 gctgaagaat tggggtccgt gctgctaagg cccgagcgtg aagaggacgt ctcacactat 4020 gtgcagatga tcagcccttg ccgtcctttc actagccgtg ctaagcgaac cggtcttgcg 4080 gagactgtca cggtcaacct gccgagaggt tttggtatcc aaggaggtga ggaggaggtg 4140 gaaccgcttc gagtagagaa gagtggtcgc cgtgtggtgt gctctgtggg cagctatgag 4200 gccttatcag gcggctttat tgattgcttg ccttcgcata tgctggcgga tacgggtgct 4260 acgctgagtc tagtggacaa gttggtaatg aggcgattag ggcggtctac tgagcggctg 4320 gagccctacg acggccgagt aaatagttcg tccggtcatc cggtgcgcat tcgtggctgg 4380 accagtcttc cggtgcggct cggttccatg gagatctcgc tccgagtctt ggtagctcac 4440 aacttgcatg tcgatgcgat tctgggagtc gatgcgcttg gcgcgttcgg cgcggtgatt 4500 gacgttgcgg aaagaaccat gactttaaaa ctcaccgggg aagtattgtc gttgggcgca 4560 gcggtggttc atgattcatt tatggcaact atggctactt cggtccggtt gcccccgcac 4620 ggtcaagcac tggtgacgac ggaggtagtt ggagaggttg acgaccagtc aaccgtactt 4680 attgaaggat cgcttggatt accaccaact ctgtgtgtgg cccgctcact gtgcacaatt 4740 gaaaaaggaa aggtcatcgt agaaatttgc aatgcaacca cggatgagat atggattcga 4800 aagggaacgg tagtcgcctc gacgtcagta attcccgagt cggcctttag ctttgagaag 4860 cttcgcgcgg acgatgaacc ggtattggag atagtgccgg ctgaagatcg tcccccggac 4920 acggtaaagt cagttgctga ggagccgacg gagcgggtgg ctcaaaagga gagagcctcg 4980 aaaccagagg tgcccccaga caaaggaggg aatatgaagg ccgacttttc acagtcaaag 5040 ttgtcagcgg agcaaaaggc cttgttccag acggagttaa accgattcga tagtctgttt 5100 gtcgagtcct caaaggctcc cggacggaca gatctactaa acttccgtat tgacactgga 5160 cctaatgcgc ctatcaagca gcaaccgtac cgagtatcgg tagcggaagg cgaggtaatg 5220 gaagccgaga ttcagcagta tctagaactc gggatcattc gtccgtcgat cagcccctgg 5280 gctagcccgg tgttgatgat ccggaagcct gacggtggaa tacgattctg cattgactac 5340 cgacggttga attccgtgac cgtgaaagac tgctacccta tgcctttgat cgacgacatc 5400 ctggatgttt tgggtgatgc tcagttgttt tcgaccatgg atattgcgtc cggatactgg 5460 aacgtgccta tggacgagga cagcatcgct aagactgcct tcacttgcaa gtacggtctt 5520 tatgagtgga tggtcatgcc cttcggtctt tgcaatgcgg taccggcatt tgaacggttg 5580 atggagactg tgctagtgga tctcaagtgg cgtatttgct tggtgtatct ggacgactgc 5640 gtcatcttta gcaaagattt cccgtcgcat ctggtccgtg ttcgacaagt gctcacgagg 5700 ttccaacaag ctggttttaa gctgaagatg aaaaagtgcc attggggacg aaaccaggta 5760 gcgttcctcg gtcatatagt gaccccgacc ggtattctcc cgaacccgga gaaggtcaag 5820 gcggtgatga acgtggcgag accgcaagat gtgcatggga ttaggtcttt tctcggtcta 5880 accagctact tcagacgata tatccctggg tacgcttcga tttctgcgcc gttggaacga 5940 ttgaaggtga aggacgctcc gtttgattgg aacgctgatt gtgaagccgc tttcagacaa 6000 ctcaaacgtg cattggtgaa gccgcctatc ttgatctatc ccaactcaaa aagacggttc 6060 aaattgtttg tggactcgtc tcggtatgcc gtcggagcgt gcctcatgca agaagcgaac 6120 ggtcgagacc gtgtcgtcgc ctatgctagc aaactcctga ccggttctca gaaaaattgg 6180 atcaacaaaa cggatggaat ttccgagatc gagtgttggg gtgttgtatg ggcaacacga 6240 aagtttcgat gttacttgga taagcgcgag ttcgacctct atacggatca ccaggctttg 6300 acctgggtat tcaaccctgg aaaccgtact acgaacgcta aactggcccg ttgggcgatg 6360 gagttgtcga acctgcagtt caaagtgcag cacaagcctg gaacgatgat ggggcatgtt 6420 gatggtctct cccgactgcc tactaactca gtgaacgctt tgactctagc tgacttgttg 6480 aacccggtgg agatcgccga taacgagact ctcaacttag tcggagagcc tcatgaacct 6540 gagggacttt ccggtggacc gtatgagggt gatattgaca ctgaggagaa acgtgaagag 6600 tctgacgaag aacaggctga tgtcaatcac ggtcctggtg aggacggtcc tgggttggac 6660 gcttcgtgtc catccgtcga tatgttcgga ctggatagcg aacagttctg gatggagcag 6720 cagtctgtgt cgtggatcaa ggctctggta gctttcttga ttaatcatgc gctccccttg 6780 gacccgtttc tgcgtgctcg tgtggtgaag ctagcgccta aatttgacgc gtctggtggt 6840 ctcctgatga gacgtgtgaa cttgccggcc agagtaggcc cggcacgatc gttgaccgtg 6900 cctgtgatac ccttaccgta cgtgcagacg gtcttacact tctgtcattc ggatttactg 6960 tcttcacact tggggctcac gaagactttg gagaaagtac gccgacacgc ctattggcct 7020 ggatggcgga aggacgtcgc cgagtatata agagagtgca acaagtgtgg aagcggtaaa 7080 ggacaccgtc catggaacgc tgggctaatg caacggatgc ctgtcgtcga cttgaccggt 7140 cccttttcgt tattggtagt ggatgcgatt ggtcctctcc cggagacgga ccggggcaat 7200 aagtatatcc tggtgttcgt ggattacttc actagatggg tagaggcgtt cgctgtcaac 7260 cgtctagatt cggtgacatt cgtagaggtg atggtgaacg gagtggtctc gcggcacggt 7320 gtgcctgccc ggttgttaag tgacaatggg tcgaacttca cgtcggaagt ggcgaagtct 7380 ttttatcaga ctcttggaat caagaaattg tacggtgctg cgtaccatcc tcagacacag 7440 ggcctggtgg aacggttcaa tggcacgctt atcgggatgt tgaagatgca tgtgagtgaa 7500 gctcagacgg attgggatgt gtatttgcct agagtgttgt tcgcctatag gacggcttac 7560 catgaagcac tgggtgactc tccctttttc tctctgtacg gtcgagatcc ggtgttgccg 7620 ctggacgttg cgtttttgaa tctcgggaag aaatggagaa gtaatgaggt ggcacggtat 7680 cgaagggaac tgaaccgctc tctgaaggac tctcggcatt tggtagaacg tcaattggtg 7740 aaagcacagg atcgtcacga aagacgactg cgaggacaag tcgaagtgaa atatgctgag 7800 ggtgaccagg tttgggtgta ccaaccgttc cgagccaaac gaggagaagt acgaacgaag 7860 aagctagctt tttcctggca cggcccgtac cgtgtaatag ccaaagtcgg ggagaacgcg 7920 tatcggatcg atgttccgac gcaccctgct aaagtggttc caatcaatgc caaccggttg 7980 aagaaatacc gtggaaggtg gactcgcccc tatgcagatg atgtgcctga gggaatagaa 8040 gaaaacgagg aagccgagga tgggccgctt gaggggtcgg acttgccacc gtccagtttc 8100 acagaaagac tgacggttgg gcgaggggac acggtaattg taggagtgga ttctcctttg 8160 ctagaagttg tggcaaagcg gacggtggat cgtaccgtcg agtatctggc tctgactgcg 8220 aattatgaaa cgttttggtt gtcgcgggtg gcacttatgc ccgaatatgc ggatctggtc 8280 actgcttttg agaaagcaga gagggccaaa ggacggttgc ctgcgttgcg tcgaagtgct 8340 cgcttggcgg atgccaatgc ggaagtcgac gacgcagact tattgatgat gtagccttcg 8400 tggctcttac ttgagaatta tgggacgatt acggaattat ggatatggga ctcaaggaga 8460 gaacggagac gaattgcatg ttatattttt aaattttagc accggactgg ggacgtttcc 8520 tactgaatca aaggcgaacg aaaagaaaat ggaacggaac cctgcagcgt ctcagtcgtg 8580 gtctgcattt gcttggtaag tgcgcgggac gcgcactgtc acttggacga agaggtggtg 8640 gcgccggtct tctggggatt ggaaggcgtc ggcggcgaac tcttcttccc gctgctgccg 8700 gacttggggg tgccggacga atcgtcgtcc tcgtctttcg cttcctcgtc atcagggtca 8760 tcgtcgactt ggtcacctga ctcctctgaa tccgacgact cttcgatgca cttgcttgct 8820 ctcttcgact tgaccgggga cgttggcggt aacaccatga actcttcatc ctcgtcctcg 8880 aaatctgagt catcttcacc tttctcgctg ggcttgtacg gctttgagtc ttcgacccag 8940 atcttgtctc cggcaaggat tgacttggcc acatcgactt gcgtagcgcg aagcgcgcgg 9000 tcggacaaga gcttcttcca ggacccgctg gaccggttgc cgacccaaga agacaccgga 9060 gggtcgccgc ctgcgacgtc caacgcgatg cgagcgaggg ctttgtcgga gagtcgcaag 9120 tgggacctgc gcgtcggatc caaggcctgc gattgctcga gcaactcggg gatggatccg 9180 tacccgtcat catccaccgt aaagggatcc agagccctgg cgatggtacg gtcgtaacta 9240 ggtcggtcgc ggcgaaatag tgtgacgaga tcctcctgtg ggcggtctcc cgagtctttg 9300 gcgtcggccg agtgtttggc agccttgccg ccgagccaca tcaagttgtc gtgagctccg 9360 tgctcgtatc ggtccatgaa gccataatag ccgaacactt cgatgttcgc actcagaaat 9420 tgtaaccggg cctgtatggc gctggccttc gccttgcgac gcgcttccgc tttatcggag 9480 ggcgcataca aagccagaat gaagaaggtg cggcggtgtt tcatccacag gcgccagtgt 9540 ttgagatgaa ggtgcgcgaa gtcgttgggg gcgtaccaag cacgctgccc gcgccaagga 9600 tacgccaagc ggaagggtcc cttcccttca gcggctgcct gcttaatcaa acgcgctagg 9660 tcgcgtcgga taccggccgg tgtgtcgcta gccaagtcga acgagaacgc aacgggcgaa 9720 ggagtcttct gtgcgctggc acgctgcttc ttgttgggcg gtgacgtggt cttggtggaa 9780 ctccgtgtgg cagggcgctt ggaagccttg gtggagacgg ccgaagaaac agtggaggag 9840 gcggccgcgg tcgtatgagt aggagagaag acctcgtgct cgagagaaag accgacctgc 9900 atgactggca ccggcggcag gaggtgcacc gccgtagaaa gagccgtagt ctcgtcgagg 9960 agcaccgaca cggcgaggtc gtcgagcaca cggagccccg tggtcgctcc gttcaccgcc 10020 aacaaagacc gcattcgggc ccagaagtca gcttgagctc ggacggtcga gtctgcattc 10080 gaagtgtcgg ctccctcttc aaggagagcg aggaggcgag ctgctggagg gagaggtgac 10140 tgtgaagaag agtggcgagt cttggtcatc gtgcgggagg agtgcgcgcg gaggagcaaa 10200 ttcgtgaatg aactcgaatg gggtagtggg tccgtgatgg atagaacctg acccggtttg 10260 tcaagtttct gacttcgtca ctttctgtct acctaatgcg gttcttggag aagaagatga 10320 ctaccggtcc gaccgtggtc caaactggct acctgtgcac gacacgagaa cggtcgggac 10380 ttatcctatt tgggttgatg gacgtctact gagacggata ggaccgtgct gggtcttaca 10440 tttaagcgct gaactgatag agacggacat cggcttgcaa gccgtgctcg cttgcactct 10500 aatttccatt ttgctacgag gcggtcaaag gcggcaatcg aagacggtac tgtggtgggc 10560 gaaatgagca ctgagggtgt cctcatggct gccgtcgaca ccgtcctgcg atacaagaag 10620 gagctgttgt ggctgtgcat cggagccgtg ctatggacga tcactgagcc tattagaagc 10680 gtcgtcgtcc ggttgttcga agtcgtgggt tttgcagtgt acaagtggac cggtctagcc 10740 acggcttgcc tccgtcgata cagaagctat gtgagaggaa ggatgattca agaacagccc 10800 tggaattcac gatggtggaa gacttacgag gcgttgtggg ctacaccgat ggtagtgctc 10860 caagcccgct gcgagcacga gatgggcctc ggacgactcc tcttcaaatg gtgcgacgca 10920 tttcatgctt attggagtgt gtttctaccc gaatcgatac agtctggctg ctcggggacg 10980 gtgaagtatt ggcagggaac gttagtgggg gtgcgtcgtt cggtcgaccg agcttggatg 11040 ctcctgcagg tgctaggagg agtaaccgtg ctggtgttct actcgatgtt ctacgcggtc 11100 ctgttcgtct atgaattaat ggaatgggcc tgccagggcc cacctggagt attggcggta 11160 gtggtggtcg tcgactattt ggtggtgaat agtgatgaag tgggggtgcg ctttcggacg 11220 gtcgccgcct gggatgtagt cgtcctggct gtggttgtaa caagtcactt gtggagatgg 11280 tatgaagcgt ccgcggacgg tcggtcaccg atgaagatgg caaaggatgg ttatgcggat 11340 tggcagcgac gctgtgagga gctgaaccaa gctcagcggc tcagcgaggc cttttgggaa 11400 atggacggag gaagcggttc ggcaagtcgt cgaccggtgc gaacgcgcag cggcctggta 11460 gctgaacaac gggcgctcca cgaactgatg caagcggatc gagatgcggc gtctcggcga 11520 ggacgccgag ttttcgtcag ggagga 11546 // ID Copia-24_PIT-I repbase; DNA; PLN; 3781 BP. XX AC AATU01012763; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-24_PIT_; KW Copia-24_PIT-LTR; Copia-24_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3781 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01012763; Positions 4360 580. XX CC Positions [1205-1705] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 110..2746 FT /product="Copia-24_PIT-I_2p" FT /translation="MEMAEGGNILHHCNEVLNISAKLSSIGAKMEDEDVAI FT CLLRSLPKSYENVVLNLEMSNAELRTQDVVKVLTNEHIKRQGEKTAAVKIE FT EAAKAFNAERETRRCDYCGKLGHVIDKCWTKQKDENRGGARRGRGGRGANN FT IDWRNDDDYDYVAFAVSMSTACGVSTGKKFDGTWAIDSGATHHICNDKSKF FT VDINLRDEGVLTVANGQTAKILEIGTVVQQVVLPNGNVRNVRIEDALYVPS FT MNKNLLSVPQINRGGHFKVVFDGSEMHIARKSSKKIVASADLIDGLYWLRV FT PKVSANSTSKVSINGVDLHARMGHAPNDVLRKMVSSGMVTSAKMPTSSKNS FT SGCRGCQQGKMIQKPFPSNPDKPKYKPFEFLHFDLCGAMEKESLGGSKYLL FT LITDEASGCMTGFCLRAKSESKGCLRKFIAKVERQFDARVKLVRHDGAKEF FT ATNSLKAFYDDHGIEVQPTVRYAHQTNATAERASRTIVTIGRSMLHFARLD FT ETFWAEAAMTAIYIKNRLPSPKVPGKTPFEIVYKRKPNVKHMRVFGCKAYV FT LTPKEKRLKWDPKAREGIFMGYGERSKAYRVYDIEAGQVVTSRDVTFDEST FT FDDVNVQDDDEDVNDAADILDDLEISDDHGTREFKQAGKRKARSNPDEREQ FT VRRPRHSAGLEEASAPGHDSDHQESKNEDNDDDDSTQPMYWRASANAVETS FT DSAEPKTFQEAVSGEDQVHWRKAIRAELKSMRLRGVFRGVKLPNNQRAVGA FT KWVFKIKRKADGSIEKYKARLVAKGFVQKYGIDYTETFSPVVKYVTLRTII FT AVAKFFNWPLDQLDVVTAFLYGLIKEKVFCSVPEGVELDDGYDCVELLKAI FT YGLKQASRVWNETFDEYVRSIGFRVS" FT CDS 2695..3768 FT /product="Copia-24_PIT-I_1p" FT /translation="MERDLRRVCALHRISRFISYDPCLYIKVVDGDCILML FT VYVDYVLVTGSSSMMISEVKKQLKARFEMTDSVKCSSILGIEVVDNADGSV FT TLSQARYINDILERFGMQNCKPAASPVDLSMKLVASDALTKLDAPFREAVG FT ALMHLMTSTRPDIAFAVGYVSRFMENPQVEHWIAVKRIFRYLQGTKSHGLH FT FSPGNGIDFRGYSDADWAGDHSDRKSTSGYLFQVLGGPVSWGSKKQSSVSL FT STSEAEYIALSLAIQKGKWVHKLLCEILDAAGKDTPDLKIFEDNQSCIKMT FT KNPVNHGRAKHIDIKYHHIRDEVKRGEVIVEYCETTTMLADILTKGLGGPR FT HKDLTTALGVEACSH" XX SQ Sequence 3781 BP; 927 A; 977 C; 1116 G; 761 T; 0 other; tgttgtcgac gactacgagg aagcctgggt cgcgtgggcg cgcttgcgta ccctttacgg 60 tggatcgcag aaggctggac gcatctacct caagcgccag ctcttcagca tggagatggc 120 agaaggcgga aacatccttc accattgcaa cgaggtcctc aacatcagcg ccaagctcag 180 cagtatcggc gccaagatgg aggacgagga tgtggcgatc tgcttgctgc gcagtctacc 240 caagagctac gagaacgtcg tgctgaactt ggagatgagc aatgcagagc tgcgaacgca 300 agatgtggtg aaggtgctca cgaatgagca tatcaagcga caaggcgaga agactgcggc 360 ggtgaagatc gaggaagcag cgaaggcctt caacgccgag cgtgaaactc gccggtgtga 420 ttactgcgga aaactggggc acgttattga caagtgctgg accaagcaga aggatgaaaa 480 ccgaggaggt gcacgacgcg gtcgaggtgg ccgcggtgcc aacaatatcg actggcgtaa 540 cgacgacgac tacgactacg tcgcgtttgc ggtctccatg tcgacagcgt gtggagtatc 600 gacgggcaag aagttcgacg gcacatgggc gatcgacagt ggtgcaaccc accacatctg 660 caacgacaag tccaagtttg tggacatcaa cttgcgcgac gaaggcgtac tcacggttgc 720 caacggacaa acggccaaga ttttggaaat cggcactgtt gtgcaacaag tggttctgcc 780 taatgggaat gtgcgtaacg tccggatcga agatgctctc tacgtgccga gcatgaacaa 840 gaacctgctg tctgtgcctc agatcaaccg aggcggacac ttcaaggtgg tgtttgacgg 900 ctccgagatg cacattgcgc gcaagtcgtc gaagaagatc gttgcctcag cggacctgat 960 cgacggactc tactggctgc gagtgcccaa ggtgtctgcc aattcgacgt ccaaggtctc 1020 gatcaacggt gtcgatcttc atgcgcggat gggtcacgct ccgaacgacg tattgcggaa 1080 aatggtttcg agcggcatgg tgacgagcgc aaaaatgccg acttcgtcga agaactcgag 1140 cggatgtcgc ggatgccagc aagggaagat gatccaaaaa ccatttccaa gcaacccgga 1200 caagcccaag tacaagccat tcgagttcct gcacttcgac ctttgtggcg ccatggagaa 1260 agagtcgctt ggtggcagca agtatctgct gctgatcacg gacgaagcca gcggctgcat 1320 gacgggattc tgtttgcgcg ccaagtcgga gagtaaaggc tgtctgcgca agttcatcgc 1380 caaggtggag cgccagttcg atgccagggt caagctcgtg cgtcatgacg gtgccaagga 1440 gttcgcgacc aactcgctca aggccttcta cgacgaccat ggcatcgaag tccaaccgac 1500 ggttcgatat gcgcatcaga ccaatgcgac tgcggaacgc gccagccgga ccattgtgac 1560 tatcgggcgc agcatgcttc acttcgcacg tttggacgag acgttctggg cggaagcggc 1620 gatgacggcg atctacatca agaaccggtt gccgtcaccc aaggtcccag ggaagacgcc 1680 tttcgagatt gtgtacaaaa ggaagcccaa cgtgaagcac atgcgcgttt tcgggtgcaa 1740 ggcctacgtc ctgacgccga aggagaagcg actcaagtgg gaccccaagg ctcgtgaagg 1800 cattttcatg ggctatggag agcgttcgaa ggcgtatcgc gtttatgaca tcgaggcggg 1860 gcaggtagtg acctctcgcg atgtcacttt cgacgaatcc acctttgacg acgtcaatgt 1920 tcaagatgac gatgaagatg tcaatgatgc ggcggatatc ctggacgacc tcgagatttc 1980 ggacgaccat ggaactcgtg aattcaagca ggcggggaaa cgcaaagctc gctccaaccc 2040 tgacgaacgg gaacaagttc gtcgaccgcg tcacagtgct ggattggaag aagcaagtgc 2100 tccgggccat gactccgacc atcaagaatc caagaatgaa gacaatgatg atgatgactc 2160 gactcagccc atgtattggc gtgcgagtgc gaatgcagtg gaaacgagtg acagcgccga 2220 gccgaagacg ttccaagagg ctgtgagcgg cgaagaccaa gtccactggc gcaaggcgat 2280 ccgagcagag ctcaagtcga tgcgacttcg tggagtgttt cgtggcgtta agttaccgaa 2340 caaccagcgt gcggtcggag ccaagtgggt gttcaagatc aagcgtaaag ccgacggatc 2400 catcgagaaa tacaaggctc gactcgtcgc gaaaggattt gtgcagaagt acggcatcga 2460 ctacaccgag acgttttcgc cggtggtcaa gtacgtcacg ctgcgaacga tcatcgctgt 2520 ggccaagttc ttcaattggc ccctcgacca acttgatgtc gtcacggcgt tcctgtacgg 2580 cttgataaag gagaaggtgt tctgcagtgt tccagaaggc gtggagcttg atgacggcta 2640 cgactgcgtg gaactgctca aggcgatcta cggtctcaag caagcttctc gagtatggaa 2700 cgagaccttc gacgagtatg tgcgctccat cggatttcgc gtttcataag ctacgatccg 2760 tgcctctaca tcaaggttgt cgacggtgac tgcattctga tgctggtgta cgtcgactat 2820 gtgttggtga ccggaagctc ttcgatgatg atctccgaag tgaagaagca gctcaaggca 2880 cgattcgaga tgactgacag cgtcaagtgc tcctccattc tgggcatcga agtggtcgac 2940 aacgcagacg gcagtgtcac gttgtcccaa gctcgctaca tcaacgacat cctggagcgc 3000 tttggcatgc agaactgcaa acctgctgcc agtccagtcg acctcagcat gaagctcgtt 3060 gccagtgacg ccctgaccaa gttggatgcg ccgttccgtg aagctgtggg tgctctcatg 3120 cacttgatga cgtcgactcg cccggacatt gcttttgctg ttggatatgt ttcacgattc 3180 atggagaacc ctcaagtcga acactggatc gctgtcaaga ggatcttccg ttaccttcaa 3240 ggtaccaagt cgcacggact ccatttttca ccaggcaacg gaatcgactt tcgtggctat 3300 tcggatgcag actgggctgg tgaccacagt gaccgcaagt cgacttcggg ctacctgttt 3360 caagttctcg gtggaccagt atcgtgggga tccaagaagc agtcaagtgt ctctctctcc 3420 acgagtgaag ccgagtacat cgcactgagc ctggcaatcc aaaaaggcaa gtgggtgcac 3480 aagcttctgt gtgagatcct cgacgctgca ggcaaagaca ccccggatct caagattttc 3540 gaagataacc agtcgtgcat caagatgacg aagaaccccg tgaaccatgg ccgcgccaag 3600 cacatcgaca tcaagtacca ccacatccgt gatgaagtca agcgcggtga agtgatcgtc 3660 gagtactgcg agactacgac catgctggct gacatcttga ccaagggact cggcggacct 3720 cgtcacaagg acttaacgac ggctcttggc gttgaagcgt gttcgcattg agaggggctg 3780 g 3781 // ID Copia6-I_VC repbase; DNA; PLN; 4209 BP. XX AC scaffold_13; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia6-VC; KW Copia6-LTR_VC; Copia6-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4209 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 110-110 (2008). XX DR Genome; scaffold_13; Positions 520255 524463. XX CC Positions [1511-2041] - Integrase core CC 'CGAAC' target site duplication CC LTRs are 100% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 1451..4195 FT /product="Copia6-I_VC_1p" FT /translation="MPRGKPSSGEQGLRAVRYGKNDPQPPSFIDAQGRTRA FT RSRPYDLCGPMPVTSLGGANYFATFYDDFSKYSEVRCVRAKSEVPAAVREV FT LTKWERQTGLEVRCVRTDCGTEYVNDRLASFFSERGIVHEKSAPYTPEQNG FT AAERLNRTLLERVRAMQYDSGVPPELWGEAIMTANTLRNVCPTKGTVQTPW FT ELFTGKPPDVSKLRVFGCVAYVQVPKALRNKLDPVCVKGILVGYEPKFSAW FT RVWIPAEGRIRVSVDVVFDEGIMYSVAYLLDSIEESLSSGTDDEGPRRAPL FT VEIEMNPVGGPAGDEGSDDEPGPLIDDDEASDWSESDSDDDGEVDEEASDG FT LVNAGPSDAGPSNLGPSNTNNNLPLALGREKRFNAGVPPKRFAFRVEMEEE FT SDDDVDIPESYEEAMASPYAEFWRAAMLEELESLRAKGTWSLVPKPKDNRS FT LDVKWVFSLKRDKHGAIERFKARLVVKGFMQREGVDFQEVFAPVSRHTTLR FT TFLSMVAGADMELHQLDVKTAFLNGDLEEEIYVKQPPGFEEGGPGIVCLLH FT KALYGLRQASRAWYDTLCEELVSMGFVASSADPSLFVRRKQGEVVYLLVYV FT DDVLIASWSERAVSEVKAAIMRRFECRDLGEVSLFLGLTLKRDRANRVITV FT SQGRMVKDIVGLYGMANARPKSVPMSPGTVLPNAAVEDRLDRERFPYSQLI FT GSLLYVSGCTRPDIAQAVGVLARHMSNPSRSDWKAAKEVVRYLAGTSDYGL FT VLGGERADERLVGYSDADYAGCADSRRSTSGYVFTLHGGTVSWASKLQRSV FT AASTMEAEYMAVSEAAKEALWLRQLLGDLGYDLKPTQINCDSQSAIRLASN FT PVVSKQSKHISVRYHFVREQVALGTLVMVDCRSEDMVADCLTKPLPTEKFE FT KHCIAMNVCKS" XX SQ Sequence 4209 BP; 929 A; 963 C; 1301 G; 1016 T; 0 other; ggttatgagc cccgcgcttt agcgtgcggt catccgtttg cccggtggtg cctttttctg 60 ctgtgtgcgg acttagctgt aggcaaggat gaaaatagat aaggaggatt tttatttctc 120 cattagcacc tttcacctct tgaaggagca cgtcatcggc gtccttcaac gtaaaggact 180 agcgaacgcg atcagccccg tgcaggctac gcgggatgta gtgacagacg agcaagacca 240 gcgagctttg ggcgttatca aggaattcat ccgcgtcctg gagaagcccc tgtacgcgcg 300 tcacgcgaag gcgtacgacc tgtggcttgc tttggcggct aagtatgggc agcagactcg 360 agctgcgaag agcttattgg ttcaacggtt gacccaattc aagatggaat cgagcgagac 420 gatcagcgat tacatcgcga ggttccaagc gcttcgacta gagttcgcag ccatcgatat 480 tagtttggcg gatgacgagg cggtggacca cgtcttgagg ggcctacctg atacgtatgc 540 catgatccgc acagttatag aaaatactac cgacgttgga cgagtccaag aagttgagat 600 gcggataatc tcgaagagca gaagattgat tcggagacca agaagtcgcc cgtgaaggga 660 gcctacaacg tcgcgcgggc aggcgcccca cagaaggaag gacaacagga agtgcttcta 720 ctgcaaggag cagggccatt tagttgccaa gtgtccgaag cttagacagc catatccgcc 780 accaccaccg ccgccgccgc cgcctccccc ctccaccacc tccccagcct ttcatgcgcc 840 aacgacaaca acaaccgcaa gtgcagccgc aggcccaggg cgtgcggcgg cgactagttg 900 gcgtcataaa cacgcttggg ggaatgagac tggcacccgg tgaatggctt ctcgacattg 960 gagccgagga tcacctgacc ttcacgcctg aggacgtgga gggtctgaag ccggtgcgcg 1020 agggcgaggg tgtcgttttt gaggtggcgg atgggcggac ggttagctcg attggtgagg 1080 gcagggcggt tttcgcctct tttcgagggc agacggaatt gtcggtacct gtacacgtag 1140 ttccggacct gcaacaccgc ctgttctcag tcaaggccct gaagagatcc ttcccggatc 1200 aggtggtaga ggttgtcctg tccgccgatt gctcgtatat agcaatagac ggaattcccg 1260 ctgtcgatgt gttcgaggag aacgggatgt acatcgtgct tgcgcagcca gatgccgagt 1320 ggaatagggc attatcactg catcgctttc ccaaggaaaa gttagacacc ttgcatcgtc 1380 gcatggggca tgctagcctc acccgttttg ataggccgtt ttttgacgac ctggtccatt 1440 cggagcccat atgccgcgag gaaagccttc gtccggagag caaggtctgc gagccgtgcg 1500 ttatgggaaa aatgacccgc agcccccatc attcatcgac gcacaagggc gaacgcgtgc 1560 tcgatctcgt ccatatgatc tttgcggccc gatgccggtc acgtcgctgg gtggagccaa 1620 ctacttcgct accttctacg acgattttag caaatactcc gaggttcgtt gcgttcgcgc 1680 aaagagcgaa gtccccgctg ctgttcgtga ggttttgact aagtgggaac ggcagactgg 1740 tctagaagtt cgttgcgtcc gaactgattg cggcacggag tacgtcaacg atcgccttgc 1800 ctccttcttt tctgagaggg gtattgtgca tgagaagtcg gccccgtata caccagagca 1860 aaacggagca gcggagcgcc tgaacaggac tttgctggag cgtgtgcggg ccatgcaata 1920 tgattcgggc gtacctccgg agctgtgggg agaggcaata atgacggcca acaccttgcg 1980 caacgtgtgt cctacgaagg ggactgtaca gacgccgtgg gagctgttta ctggaaagcc 2040 cccggacgtt tctaagctac gggtattcgg gtgcgtggct tatgtacagg ttccgaaggc 2100 gcttagaaat aaacttgacc cggtctgcgt caagggtatc ctagttgggt atgaacctaa 2160 atttagtgcg tggcgcgtat ggatcccagc agaagggcgg attcgtgtta gtgtagatgt 2220 ggttttcgat gagggaatca tgtatagtgt cgcgtatttg ctcgattcga tagaggagtc 2280 gctctcttcc ggtactgatg atgagggccc caggagggcg cccttggtcg agatcgagat 2340 gaatcctgta ggcgggccgg ctggcgacga ggggtcggat gacgagccgg ggccgttgat 2400 tgatgacgat gaggcgtcgg attggtccga gtctgatagt gatgatgacg gtgaagtgga 2460 tgaggaggcc agtgatggat tggttaacgc agggccgtcc gacgcagggc cgtcaaatct 2520 aggaccgtcc aatacgaata ataatttgcc gttagctctt ggtagggaaa agcgtttcaa 2580 tgccggagtt ccacccaaac gttttgcttt ccgcgtagag atggaggaag agtcggatga 2640 tgatgtcgat attccggaat cttacgagga agcaatggca tctccctatg ctgaattttg 2700 gcgtgctgca atgcttgaag agcttgagtc tttgcgtgcg aagggtactt ggtccttagt 2760 gccgaagccc aaggacaaca ggtctcttga cgttaagtgg gtattctcgc tgaagcgtga 2820 caagcatggt gccatagaac ggttcaaggc acgcctagta gtgaagggtt tcatgcaacg 2880 cgagggtgtg gattttcagg aggtttttgc gccggtgagt cgtcacacta ccttgcgcac 2940 ctttttgtcc atggtagctg gcgcagacat ggaattgcac caattagatg tgaaaactgc 3000 gttcttgaat ggcgatttag aagaagagat ttatgttaaa caaccccccg gttttgaaga 3060 gggaggcccg gggatagttt gtcttcttca taaggccttg tatggccttc gtcaagcgtc 3120 gcgtgcatgg tatgacacgt tatgtgaaga attagtgtcg atgggctttg tcgcgtcgag 3180 tgcggaccct agtttatttg ttcgccgtaa acaaggcgag gttgtatatc ttttggttta 3240 tgtagacgac gttttgattg cgtcttggag cgagagagcc gtttcagaag tgaaggcggc 3300 tatcatgcgg cggtttgagt gccgcgattt aggagaggta agtttatttt tgggtcttac 3360 ccttaagcgc gatcgagcga acagggtaat taccgtttct caggggcgta tggttaagga 3420 cattgtgggt ctttatggca tggctaatgc acggccgaag tctgtaccta tgagtcctgg 3480 aaccgtctta cctaatgctg cagtggaaga tcggctggat cgagagcgtt tcccgtatag 3540 ccagttaatt ggcagtttgt tgtacgtgtc tggatgtact cgtcccgaca ttgcacaagc 3600 cgtgggagtt ttggcgcgtc acatgtcgaa tcctagcagg tcggactgga aagcggcgaa 3660 ggaggtagta cgctatttgg caggaacgtc cgattacgga ttagtcctag gtggtgaacg 3720 agcagatgag aggttggtcg gatatagcga tgctgactat gcgggttgtg ctgactcgcg 3780 gcggtcaacg tctggttacg tctttactct tcatggtggt acagttagtt gggctagcaa 3840 acttcagcgg agcgtggctg cgtccactat ggaggctgag tatatggctg tttcggaagc 3900 tgctaaggag gctttatggt tgcgacaact acttggcgat ctgggctacg acctcaagcc 3960 aacgcagatc aattgcgata gtcagagcgc aattcggttg gcgagcaatc cggttgtttc 4020 gaagcaatcg aagcacatct ctgtgcgtta tcattttgtg cgggagcagg tagcactcgg 4080 tacgcttgtg atggtagatt gcaggtcgga agatatggta gctgattgct taacgaagcc 4140 tttaccaact gagaagtttg agaagcattg tatagcgatg aacgtgtgca agtcctgagc 4200 gcgtgggag 4209 // ID Gypsy-29_PIT-LTR repbase; DNA; PLN; 294 BP. XX AC AATU01001420; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_PIT_; KW Gypsy-29_PIT-I; Gypsy-29_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-294 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001420; Positions 28058 28351. XX SQ Sequence 294 BP; 50 A; 84 C; 87 G; 73 T; 0 other; tgttgccatg attgctgtca cagggtttga gcttggatac gttgcagcgc gagttggggt 60 tgccacccaa tcggatcgcg ggacgcgcgc caagaagcag gctgctgggc tggtacacgc 120 gagtagtgcc gccagagatt gctggcacgc ggcccatgcc gtcaatgggc gctggcgcgc 180 gcccctttca acttcatgta ggagtgcact cgagtgaagg cgctccactt cttttgcttt 240 gcttttgctc attaatattc cttcctactt cggaccaccc cgggtttcac gaca 294 // ID Copia-1_PIT-LTR repbase; DNA; PLN; 490 BP. XX AC AATU01000092; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PIT_; KW Copia-1_PIT-I; Copia-1_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-490 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000092; Positions 172156 171667. XX SQ Sequence 490 BP; 141 A; 100 C; 131 G; 118 T; 0 other; tgttggaatc ttcaaagtca acccagacgt ttcaccagaa cgagacgttg aagttgtcta 60 agccgctgcc agactcaggt cgtaacgctc tcgccatcgg aagcgaggag ttcgacaaaa 120 taaggtggtc attaagatgt cgatcgtgat gactgtggtg atgggattaa gagttctctg 180 gcgttaccag agatcgacag cagtgcgaag tggatgaagc aagcgtgaag aactggagat 240 ttacagaaac gaaggagaac tcaatacatt tgcagattac agaacgatga cgtcagatgg 300 aaaggaagac gcatcgttcc tatatgtacg gtaatgtcgc aatggtgctt gtcaggtaag 360 tacgcatgag tagcgagatg tagtgccggc gacgaagcta acgattcaat tcactttcaa 420 ttttaacatc aactgctcac ttggtcttct atctacggca ggaaattccc cgcgcgtttc 480 tggagctgca 490 // ID Copia-1_HAE-I repbase; DNA; PLN; 4249 BP. XX AC ABWE01000045; XX DT 09-FEB-2011 (Rel. 16.02, Created) DT 09-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Hyaloperonospora arabidopsidis DE genome: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_HAE_; KW Copia-1_HAE-LTR; Copia-1_HAE-I. XX OS Hyaloperonospora arabidopsidis OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Peronosporaceae; Hyaloperonospora. XX RN [1] RP 1-4249 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Hyaloperonospora arabidopsidis RT genome."; RL Direct Submission to RU (08-FEB-2011). XX DR Genome; ABWE01000045; Positions 93915 89667. XX CC Positions [1676-1993] - Integrase core CC 'ACGGC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 3054..4247 FT /product="Copia-1_HAE-I_3p" FT /translation="MRQPVEFVDSNHPNHVCKLKCALYGLKQSPRMWNQTI FT DDFMLKIGLTKCEMDHCVYVNRDGLAMMFVVLYVDDLILACNDINFLSATK FT QALSERFKMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLQSVLTKFGMED FT CKPVKTPQDPGLKLTKNVCGGGCIHDETMKGVPYRNAVGAVMYLMVGTRPD FT LAAAVGMQSQFAADPCPTHWPVLKRVFRYLQATPIHGIRYLGSDNSELIGY FT SDADWAGDIETRYSTSGYVFLLNGGCISWRSKKQRTVALSSTEAEYMALSE FT AIQKAVWLKAFMRELGKEAGNGAIKVFEDNQGAIALAKKPEFHKRTKHIDI FT RYHFVREKVEDGQVELEYCPMQDMLADLMTKPIAAMQFDALRTRLGIQVAA FT ESSG" FT CDS join(5..1672,1676..2629) FT /product="Copia-1_HAE-I_1p" FT /translation="MSPSSADSALDTDFAFNIDASTTTTARINKFDGMSFH FT TWKFKMRMVLEERDLWEVTSGEIKMEQLTSALDQATFKRKSRKALAMISLA FT MEDSQLPMVRSASGALDAWSRLEGHFEKKSLANKLFLRRRFFTTKMEEGDD FT MLAHTNKLRTLAEQLDAVGAPVSENDLVITLLGILSGTYQFLITALESRSD FT TLTWELVTYRLLHEDMKHKEQCSDGVAADQAFMTSDKKRSGRPGKKTGAYN FT YCGKMGHWIAECPSRIHDNADRQRPQRANVVRNQDDDSGDFLFTVGNVSSS FT ESKNTAWLIDSGATQHMSYSKEFMINYKIIDPVNVHLADDGVVEAIGSGDV FT VMTMKTPSGIKKGMLTNVWYIPKLSRNLFSVGRFTKDVAPMTFNTSACFVN FT LNGQKWKVGKRAGKGLFQLSMTPVNPELENIASAAAVNLRAGKSYLWNLRL FT GHIGHDGLDAIVKKKLGVGIDITSVNKWELCNGCTLGKQTRSKFQLNAPER FT AKTMLEVVHSDVCGPMQTATFSNKRYFATFIDDKSRFCVVFLLRSKSEVLE FT KFVQFVKFATQTSKRVKVIRSDKGGEFASGKFAAFCRDRGIVQKFTPPYTP FT QLNGVAERMNRTLVESTRCMLEHADLSKEYWSEAVRTAAFLRNWCPTRATG FT NDKSPYEFWTQKKPLLKNLKVFGCHAYVHVPRERRSKLDARSVVCRFLGYS FT DYEKAYRFEELSSGRIVVSRDVQFMEDTFDSGKRTQVGSNAVGLSYNHEDF FT DDADGYSGGNSSDHDMGGQPSVAVKAPQQPVVPRPLNERPQWKQPNNFRQQ FT PLRSQMQPTVEYQRVLNVTHGHILLKLCRNHLWTSAMDVVVIQVAHIRPQH FT LAHVHRSMTCPRILRQFRTKT" XX SQ Sequence 4249 BP; 1099 A; 1043 C; 1199 G; 908 T; 0 other; ggttatgagc ccaagctctg ctgactctgc cctcgacacc gacttcgcct tcaacattga 60 cgcctccacc accaccactg ctcgtatcaa caagtttgat ggcatgagct tccacacttg 120 gaagtttaaa atgcggatgg tgttggagga gcgggatctt tgggaagtga caagtgggga 180 gatcaagatg gaacaactta cctctgcgct ggaccaggca acgttcaagc gcaagtcacg 240 gaaggcactc gcgatgatca gtctagcgat ggaggactcg cagctgccga tggttcggtc 300 ggcgagtgga gcgctcgatg catggtcgcg gctggaagga cacttcgaga agaagagctt 360 agccaacaag ctctttcttc gtcgtcgttt cttcacgacc aagatggagg aaggtgatga 420 tatgcttgca cacaccaaca agctaaggac actggcggaa cagctcgacg cagtcggagc 480 tccggtcagt gaaaatgact tggtgatcac gcttctggga attctgagcg ggacgtacca 540 gttcctcatc acggcgttgg aatcacgttc cgacacgttg acatgggagc tagtgacata 600 taggcttctg catgaagaca tgaagcacaa ggaacaatgc agcgacgggg tcgctgcaga 660 tcaagcgttc atgacaagcg acaagaagcg cagtgggcgg ccaggcaaga agactggtgc 720 gtacaactac tgcggcaaga tgggtcattg gatcgcggag tgtccatcac ggatccatga 780 caatgcggac cggcagcgtc cgcagcgtgc aaatgtggtg cgcaatcaag atgacgactc 840 gggtgacttc ctgtttacag tcggcaatgt gagcagcagt gaatccaaga acacggcatg 900 gcttatagac tcgggtgcga ctcagcacat gtcatactcg aaggagttca tgatcaacta 960 caaaattatc gatccagtaa acgtgcatct cgcagatgac ggtgtcgtgg aggcgatcgg 1020 aagcggagac gttgtgatga cgatgaagac tccaagcggc atcaagaagg gtatgctcac 1080 gaacgtgtgg tatatcccca agctttcgcg caacctgttt tcagtcggcc gattcacgaa 1140 agatgtcgca ccaatgacat tcaacaccag cgcctgcttt gtgaacctca atggccagaa 1200 gtggaaggtt ggtaagcgcg ctggcaaggg tctatttcaa ctaagcatga caccggtgaa 1260 tccagagttg gagaacatcg caagtgctgc tgcggtaaac ctgcgagctg gtaagtcgta 1320 cttatggaac ctacgactcg gtcatatcgg ccacgatgga ctcgacgcga tcgtcaagaa 1380 gaagcttggc gtcggcattg acatcacgtc ggtgaacaag tgggagctgt gcaacgggtg 1440 cacgctcggc aagcaaacac gttcaaagtt ccagttgaat gcacctgagc gtgccaaaac 1500 aatgctcgaa gtcgttcaca gcgatgtgtg cgggccaatg cagacggcga cattctccaa 1560 caagcgctat tttgcgactt ttatcgatga caaatctcga ttctgcgtgg tgttcttgct 1620 tcgcagtaag tcagaagtgc tggaaaagtt cgtgcagttt gtcaagtttg cctagaccca 1680 gaccagcaaa cgtgtgaagg tgattcgaag tgacaaagga ggcgagttcg catcaggcaa 1740 gtttgctgca ttctgccgtg atcgaggcat cgtgcagaaa tttacgccgc catacacgcc 1800 ccaactcaac ggggtggccg agcgaatgaa tcggacctta gtcgagagta cacgatgcat 1860 gcttgaacac gctgatctgt ccaaagagta ctggagtgaa gcggtcagga cggcagcatt 1920 tcttcgcaat tggtgtccga ctagagctac cggaaacgac aagtcgccat atgagttttg 1980 gacacagaag aagccgttgt tgaagaatct gaaagtcttt gggtgtcatg cgtatgtgca 2040 cgtaccaaga gagaggcgct cgaaactcga cgcgcggtcg gtggtatgcc gattcctcgg 2100 ctactccgac tacgagaaag cgtatcggtt tgaggagcta tcgagtggtc ggattgttgt 2160 gagtcgtgat gtgcaattca tggaagacac gttcgacagt ggcaagcgca ctcaagttgg 2220 aagcaatgca gtggggctct cttacaacca tgaagacttt gatgatgcgg atggctatag 2280 tggaggtaac tccagcgatc atgacatggg cggacagccg tctgtggctg taaaggcgcc 2340 acagcaacca gtcgtgccac gaccactgaa cgagcggccg caatggaagc aaccgaacaa 2400 tttccgtcag cagccgctgc gatcacagat gcaaccaact gtcgagtacc aacgggttct 2460 aaacgtcact cacggacaca ttctcttgaa gctatgtcgg aaccacctgt ggacaagcgc 2520 tatggacgta gtggtcatac aggtggcaca cattcgaccg cagcacctgg cccacgttca 2580 tcgttccatg acatgtccgc gcatcttgcg tcaattcagg acgaagacgt agagaacgaa 2640 tgttctcgcg ttgtgtattc cgtgggagat ttgccgatgt cgtttgaatc agcgatggaa 2700 tccaacaacg cagacaagtg gcaagaagca tgccactccg agttcgagtt gctcaggaag 2760 aatgagacgt gggaacttgt gccattaccg cgcggccgca aagccatcag cagcaagtgg 2820 ggtttcaaag tcaaggaaaa tcaagatggt gagatcgagc gatttaaggc gcgcctagta 2880 tcgaaaggtt tcctacagaa gtacggcgtc gattttgagg agactttcgc tactgttgcc 2940 aagttcgcgt cgatccggat catcctaagt cttgcagcac agtacaactc gtgctgcatc 3000 agatagatgt caagaccgcg ttccttaacg gatttcttga ggaagagatt tacatgagac 3060 aacctgtgga atttgtcgac tcaaaccatc ccaatcatgt ttgcaagctc aagtgcgcac 3120 tatacggtct caagcagtcg cctcgcatgt ggaatcagac catcgacgac ttcatgctca 3180 agattggctt gaccaagtgc gaaatggatc actgcgtgta cgttaatcgt gacggcttag 3240 ctatgatgtt cgtggtgctc tacgtcgacg atctaatcct cgcatgcaac gacattaatt 3300 tcctgtcggc gaccaagcaa gcgctaagtg agcgcttcaa gatgtccgat ctcggcgaac 3360 tgaagtactg cctcggcatg gaagtagagc gtgatgacaa gtcgggcgat gtgtcgatgc 3420 ggcagaccaa gttcctgcag tcggtcctga ccaagttcgg aatggaagac tgcaagcctg 3480 tgaaaacgcc gcaggacccc ggtctcaagc taacaaaaaa cgtgtgtggc ggtggatgca 3540 ttcacgacga aaccatgaag ggtgtgccgt accgaaatgc tgttggagcc gtgatgtacc 3600 tcatggttgg tactcgtcca gaccttgcag cagctgtagg aatgcaaagc caatttgctg 3660 ccgacccgtg tccgacacat tggccagtcc tcaagcgagt cttcaggtac ctgcaagcga 3720 ctccgataca cggcatccgt taccttggct ctgacaacag cgaactgatc ggctactcgg 3780 atgccgattg ggctggcgac atcgagactc gatacagcac aagcggatat gtgttcctgc 3840 ttaacggcgg ttgcattagc tggcgaagca agaagcagcg cactgtggct ctatcatcca 3900 ctgaagcaga gtatatggct ttatcggaag ctattcaaaa agcagtctgg ctcaaggcct 3960 tcatgcgcga gcttggtaaa gaagcaggaa acggcgccat aaaggtattt gaagacaacc 4020 aaggagcgat agcgttggcc aagaaaccgg agttccacaa gcgcaccaag cacatcgaca 4080 tccgctacca ctttgtgcgc gagaaggttg aggacggtca agtggagctg gagtactgcc 4140 ccatgcaaga catgctcgca gatctcatga ccaaaccaat agccgccatg cagttcgacg 4200 ctttgcgcac acggctgggt attcaggtcg ctgccgagtc gagtgggag 4249 // ID PIF_Harbinger-4_PI repbase; DNA; PLN; 2729 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-4_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-2729 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2729 BP; 668 A; 698 C; 625 G; 738 T; 0 other; agaggcattc agaagcaccg ttcaatgaaa tcacgtagct aaaaacccgt agcgtcgata 60 ccgcgttttg ctacgtgttt tgaaaatagt attgctgctt cagaactacc gttcaagtaa 120 aaacacgtaa tagaaacacg tatctagcca gagtgaatgt tcacgtatct agccagagtg 180 aatgttcaac tcacaatagc aacttcaacg ttgatacccg aactaaggca ctcaagctaa 240 tgaagaggcc ccggtctgct gacgacgacg atgaagtttt gctactctgg ttgatgcgac 300 cagcgtccct gccgtaccga gagcgcatcc ttgtccctga gtttcgcctg aacatccttg 360 caatgtctga caaggaagcg aaagaccagt ttcgcttcac tgtgggggaa ctacatctac 420 ttgcgcgcca tctgaagctt ccaaatatca ttcgtacacg ggagggagta cgcactaact 480 ccctcgaggc gctgaccgtt tgcttacgcc gcctggcata cccacagcgc tggctggata 540 tggctggaat gtttggcagg gccccgtcga ccttgtgcca cattttctac tttgttgtcg 600 agttcatcga caagaattta ggagatatga tctactggga cgaagagcga attatcagca 660 acttggatcg atactgtgcg gcgatatctg ccaaggagcc attggggatc gaaggtgttt 720 ggggctttat tgacggcact attcgcccaa tttgtcggcc gagcaaaggt caacaagcta 780 tgtacaatgg tcacaagaga gttcacgcac tcaagttcca gactgttgtc accccggatg 840 gacttatttc gcatcttttt ggtcccgttg atggccgtcg ccatgatttg ttcatgttga 900 acgagagcgg attcaaggat gtactcgaga agaactcgaa tttccacaac aagctgatct 960 atggtgaccc agcgtacgga tgtacaaacg tgttctgctg tccgtttaaa ggctgccgtg 1020 ttgacgtccc ccaacacgaa ctgaataagg cgatgagcgc tattagagtg tcggttgagt 1080 ggtcatatgg agaagtaacc aaatactttt cgttcctcga cttcaagcgc catcagcaaa 1140 ttgcaacaac accaaccgcc accctctaca agctcggagt tctattcaca aactgcatca 1200 caattgctcg aggaggaaac aacaactcaa agtatttttc gtgcaagcca ccaacattcg 1260 acgagtattt ttgctcttat caaaatgcag accagtagtt actccacgcg taaggaaatc 1320 caactagtaa cgaccaggat cacagcaata gatccacgta aaaaagctgc ggccttacac 1380 cagcgtttgc gtaatgatat ccccggaggt cttctgggca tcaagttgaa gtttcagaag 1440 agcaagctct tctttacgta gctccatgtc agctcgccgt agcgcaacct cttcactcca 1500 ttttttatca ctcctatcag cttcagcttt gcggaaatca aactctttct tccatcgctg 1560 ctcttcattc tccgccttta ctcgcttaaa agcgagctct tgttgcagca actcgtgttc 1620 atccttatgg cgcttgcgct gtctctcaat gaacttgact gttgctgcgt tgacttgagc 1680 agttgtgaca ccaccaccag atttagtaga gtctgtcgaa gaccgattaa ctgattcttc 1740 ttcatctaac gatgattcat ccgcactctc ctcacagtca ctgcgttcat cttgcattgt 1800 ctgggctcgc tggcaacggc ggtttatagc ttggtgtcga agcctttcac ctgcggattc 1860 aagccgatcc gacttatctt gaactgcttt cttctttttc gttttttcat cttgaagatc 1920 acgcatagca tcagtgatgt cttgaagtag ttgtttatgc tcggtgtact cctccgccac 1980 ccccgacttc ctccgatatt gattgtctgt cgttttgaaa tccttgagga gaagaaaaaa 2040 acgttctttg atagttctca agctcaactc ctcgcccaaa tgctcgttaa aattgtctgc 2100 cacgtcttgg taacgagccg tgacggatcc gtgctttgcg gcataaggct ggacgctcaa 2160 aatctcccta agcaatgcca agtcatctcc agtcgtaaaa tgaaactttt tcgcctgctt 2220 ggactccttc ttgttgctgt tgggagcgct ggtcttcttt ttacccttgc tactcttccg 2280 tggggtcttt ccatgcgctc tagcgccgcc agtgagttga ttatcactcg tagaagcagc 2340 agaagaagtc cacaaagtgc gcgactgcgt cggcaagcca agggcaatca cgcagttgtg 2400 cgagcacact cgcacggaga gatctccttc gtagatggcg ttagagcata tatgatggac 2460 cttcttagag caggatgaac acttggtgac gtctacgtcg tcctcttccg tgaaagcgca 2520 gtctgagaac gagcatttgc ctcgcattgg caggatctgc agcgcggtcg tctgcgttgc 2580 tttggaatct gaaggacggt aagagagccc tcagctaccg ctcgacggaa gccaaaaaca 2640 cgtacgttgc gctgaaaatt tcagcgtgga ccacactacg tggttttcaa taccgaattt 2700 ttaaaataac ggtgcttctg aatgcctct 2729 // ID Copia-6_PR-LTR repbase; DNA; PLN; 255 BP. XX AC AAQX01001127; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PR_; KW Copia-6_PR-I; Copia-6_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001127; Positions 58876 58622. XX SQ Sequence 255 BP; 68 A; 57 C; 67 G; 63 T; 0 other; tgttgtgaat tactggtcct caccggttgc tactgttgca gtttagcttt tgtcttacag 60 caagttgaag tgtagataca caaaatgctc aggagctggg aaaggagaga gaaaagcaaa 120 gaggggggaa accacacaac agaaaataca acgggagcag cacgtcgctt tactccctcg 180 ccccgtgttc gtcttctctt tctcgttcgt tgtgcggtgt gagttgctga cgcacgcaaa 240 agcagccaag ttaca 255 // ID Gypsy-52_PIT-I repbase; DNA; PLN; 4948 BP. XX AC AATU01004844; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-52_PIT_; KW Gypsy-52_PIT-LTR; Gypsy-52_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4948 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004844; Positions 10691 15638. XX CC 'TTATC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 42..1100 FT /product="Gypsy-52_PIT-I_2p" FT /translation="MVMRNRSPNPRPRQQRRRMRDEDATATASAPIEAAPS FT QDASSTGTQAAPATQQATGSPDGVAMLQQMFQAFLTSTQQQQQFLTQVIAR FT QTQTQQQMLQQQVLMQRSQKKKGTPPSFNGQTTDDLELWIFSTEQYYADCQ FT SDMEGNTSVFVDMIFANLGPTAKTWFRDFKMSLGNQPATWAIFKAKIRERF FT RDSDFEHKVLSKLHQLRRTGSQQEYTTRFLHLLSQLDQDVPEFVKRWYYQQ FT HLPEDVSSSISQHVPKTLQDVIELAHRYADSRPAKTATAGLNNRKNEAKTA FT SATGGQGNSTKPPATASSSRETKQASTNASGRVCEYCAKPGHTRAVCRKLK FT ADERANQQKN" FT CDS 1283..3607 FT /product="Gypsy-52_PIT-I_1p" FT /translation="MFIDNGASFNAIAPQVAHRLGLKVTSHKKPLRIAIGN FT NQRIAIPRKTVNFTLEKDGFAPYTTDAFVMEIPEGKHVLLGMPWLVEVNPD FT IDWKSRAVSCRGTTAALSFTQCVRATPACHIGGRRRGMGHRSVGRSNHEDT FT LRYYVAHAYEAKHGETKVISAKQFRKMKSAKGDFCFMVQLEQPSDKAKRQA FT SSDWDNLKGNVAESVLLKYKDKVFRCQLPSVPPTRSTDIEAEIELVDDNPI FT VRKQFRLSNDMKAAIREWTDEVLKAGIIRPSTSAFSSPTFCVRKAVGWRIV FT HDFRAINARLRIPAISVPRKEDIYDAMAGSHWFSAMDLLWGFFQVRLREKD FT IPYTAFSTPDGLFEYLVTPMGLASSPAAFNRLMQTIFSDQSKFCRAYFDDL FT FVFTKNVDIAEHLDALDRVLERCAEEELYVKLAKCTFCSAEIPCLGDFFGR FT NGVRMDPDKVRIIREWPVPSTKKQVQSFLGTCVYVSKFCKNFAELAAPLTD FT ATRGKSAHEKVTFSPDQLECFHKLKSVLTLPPVLAHPDFSRDFHVRMDASD FT FAVGGYLFQVDSEGNEHIIAFGGRKMTSAELMYPTREKELLAALHAMRTWR FT VYLLDRPFYINTDHKTLQSILEQKTCSQRLARWLNELGMYRPIFRWIPGDT FT NGIADMVSCNPSFHPAESAHFVSLADLLRQLTATQANLDIEEVQLRYMRGR FT PTILQQCVNLYSEYEVFGDLYKCLNCSTNTMESPPVQLNRTLRANTDTFSL FT KTKSCISSPILTPRGEYVYRAILT" XX SQ Sequence 4948 BP; 1230 A; 1337 C; 1239 G; 1142 T; 0 other; gttttaaaac tattgaagcg attctaggcg acttcgaaag catggttatg cgcaatcgga 60 gccccaaccc aagaccccgg caacaacgtc gtcggatgcg agatgaggac gcaacggcca 120 ccgcaagtgc accgatcgaa gcggctccat ctcaagatgc cagctcaact gggacgcaag 180 cggcaccagc tactcaacaa gcaaccggtt cgccggatgg cgttgccatg ctgcagcaaa 240 tgttccaggc cttcttgacg agcacgcagc agcaacagca gtttctaacc caagttatcg 300 cgcggcaaac gcagacgcag cagcaaatgc tacagcagca agtgctaatg cagcgttcgc 360 agaagaagaa gggcactcct ccatcattca acgggcagac aactgatgac ctagaattat 420 ggatcttcag tactgagcag tactatgccg attgccaatc ggacatggag ggcaacacgt 480 ccgtgttcgt ggacatgata tttgccaacc ttggccccac ggctaaaacc tggttccgcg 540 actttaagat gtcactcgga aaccagccag caacatgggc catttttaag gccaaaattc 600 gtgagaggtt tcgcgacagc gacttcgagc acaaggtgct gtcaaagttg caccagcttc 660 gacgcacagg gtcccagcaa gagtacacga cgcgattcct acacttactc tcgcagttag 720 accaagacgt tcctgaattc gtcaaacgtt ggtactacca acagcactta ccagaagacg 780 tcagcagctc catctctcaa catgtgccga agacgctgca ggacgttatc gaactcgctc 840 accgctacgc tgactcccgc ccggccaaaa ccgcaacggc aggcctcaac aaccgaaaga 900 acgaggccaa aacagcaagt gccactggtg gccaaggaaa cagcacgaag ccacctgcta 960 ctgcaagttc ctctagagaa acaaagcagg cgtccacaaa cgcctccggc cgagtgtgtg 1020 agtattgcgc caagcctggt cacacacgcg ccgtctgccg caagctcaag gcggacgagc 1080 gggccaatca acaaaaaaac tagacggctc ggtggggtgg caacccactg agcctacaac 1140 ggtagtcaaa gatggcagta ctttcgctac ggtggccccg tcgaagcgac tttgttatca 1200 ctcagatgat ggcaagtcgc gttcgacaaa tctatactgc tacttgactc aattggggcg 1260 cattctaaac gcttcggttg agatgttcat cgacaacggt gcttctttca atgcgatagc 1320 accgcaagtg gcacatcgct tgggtcttaa ggtgacttca cacaaaaagc ctctccgtat 1380 agctatcggc aacaaccagc ggatcgcgat tcctcggaaa actgtaaatt ttacgttgga 1440 aaaggatgga tttgctccgt acacaacgga cgctttcgtg atggagattc cggaaggtaa 1500 acacgtccta ctaggtatgc catggcttgt agaagttaat cccgacattg attggaagtc 1560 gcgggcggtc agttgtcgtg gaactacagc ggcgctctcg ttcacgcagt gcgtgcgagc 1620 caccccagct tgccatattg gtggcaggcg acgtggaatg ggacatcgat cggttggacg 1680 ttctaatcac gaggacacgc tacgttacta cgtagctcac gcttatgagg caaagcatgg 1740 cgagacaaag gtgatcagtg ctaagcaatt ccggaagatg aagagcgcta agggtgattt 1800 ctgctttatg gttcagctgg agcagccgtc cgataaggct aaacgacagg cttccagcga 1860 ctgggacaat cttaaaggga acgtcgcgga gtctgtacta ctcaagtaca aggataaagt 1920 gtttcgctgt cagctcccaa gtgttccccc cacccgctca acggatatcg aggccgagat 1980 cgaactggtg gacgacaacc ccatcgttcg taaacaattt cgacttagta acgacatgaa 2040 ggcagccata cgtgaatgga ctgatgaagt gctcaaggct ggtatcattc gcccttcaac 2100 gtcggcgttc tcatccccga cgttttgcgt gcgcaaggcc gttggctgga gaattgtgca 2160 tgattttcgt gcgattaatg ctaggctgcg cattccagcg atttctgtgc cacgaaagga 2220 ggatatttac gacgcgatgg cgggctcaca ctggttctcg gcaatggatt tgctatgggg 2280 attttttcaa gtcagacttc gggaaaagga catcccatac acggcatttt caacgcctga 2340 tggactgttt gagtacttag tgacaccgat ggggctggca agcagcccag ctgcgttcaa 2400 ccggcttatg cagactatct tcagcgacca gtccaagttc tgccgtgcct attttgatga 2460 cttgttcgtt tttacgaaga acgtcgacat cgccgagcac ctggatgcac tggatagggt 2520 gctagaacgc tgcgccgagg aggaacttta cgtgaagctg gccaagtgta cgttttgctc 2580 tgcggagatc ccctgcttgg gtgatttttt cgggcgtaac ggtgttcgaa tggaccctga 2640 caaagttcgc atcattcgcg aatggcctgt tcctagtacg aagaagcagg ttcagtcctt 2700 ccttggtaca tgtgtgtacg tctcgaagtt ctgcaagaat ttcgcagaat tggcagctcc 2760 actcactgac gcaacccgag gtaaatctgc ccacgagaag gttacattct ctccagacca 2820 gctcgagtgc ttccacaagc tgaaatccgt tttgacttta ccaccagtac tagcacatcc 2880 cgatttttct cgcgacttcc acgtgcgtat ggacgccagt gactttgcgg taggtggcta 2940 tctgtttcaa gtcgacagtg agggcaacga acacattatc gcatttggcg gacgaaaaat 3000 gacgtcggca gaactgatgt atcccacccg agaaaaggag ctcttggctg cactacatgc 3060 catgaggacc tggcgggttt atctcctgga ccgaccattt tacatcaata cggaccacaa 3120 aacattgcag agtatcttgg agcagaaaac gtgttctcaa aggctcgcac gttggctgaa 3180 cgagctcggg atgtatcggc ctatttttcg ctggatccct ggagatacaa atgggatcgc 3240 tgacatggtt tcttgtaatc catccttcca tcccgcagag tcagctcact tcgtgtccct 3300 agcagattta ctgaggcagc tgacagctac tcaagcaaat ctcgatatcg aggaggtcca 3360 gcttcgatac atgcggggtc ggcctactat tcttcagcaa tgtgtcaatt tgtacagcga 3420 atatgaagta tttggcgacc tgtacaagtg tctcaactgc agtacgaaca caatggagtc 3480 accgccagtc cagctgaatc gaacgcttcg agccaacacc gacacttttt cgttgaagac 3540 aaagtcctgt atttccagcc cgatcttgac tccgcgcggc gagtatgtgt accgagcgat 3600 actgacctga gaaacagtat tctatttgag aagcacagcg cggctactag tggacaccct 3660 ggctgtttga agactttgtt agctgtccaa gagcagttct attgaccaca catggagcgg 3720 agtgtcaaac gctacgttcg ttcttgtgaa atgtgccaac gagtaaaagc ttctcatcgc 3780 aggccagcgg gattgctcca tccgctgcaa attcctcgca atcggtggtc agatatttct 3840 atggattttg ttaccggcct tcctaaagcc cgtcgctcga agtgtgatgc tgtcatggtc 3900 atcgtagacc gactcacgaa gcgagcccac ttcattccta ctactactac ctgtacggcc 3960 cagcaagcag cccaactttt tcgtgacagc taccagaaac accacggatt accggtcagc 4020 attgtctccg accgtgatac aaagctcaca tccaaattct ggtctcaact catggggttt 4080 cagcagaccc agttgcgctt gagctcggcc tttcgccctg agaccgacgg acagactgaa 4140 aaaaccaacc attttgtttc ggactacctg cgcgcatttg tggatcctcg acacgacaac 4200 tgggacgact tactttcgtt ggccgaattt gcgtacaatg cacgtgtcca ttccagcacg 4260 ggcatgtcgc cttttgtggc cgatatcggg tacaaccctc gctccgtcgc cgatttggcc 4320 attccttcat ctgcggggcg ttcacgagca gctctgcaat ttgtacagca ccaacaagtt 4380 gtttagcaac agtgcaagga ctcacttgag caggctcagg cctcaatgaa ttattttcat 4440 gaccgcaatc gtcccgacta caagtttgct cccggtgatc aagttcttct tgatactact 4500 ccccttgact tgcatcatct tggcgtttcc ggcaagcgta aactcgctcc acgatacatc 4560 ggcccatatt ccgtgttgaa gcttaccaca ccggatacct accaggttca gctcccaccc 4620 gggctcaagc tgcacaatga gttccacatt tcttatctcc gaccgtacga gctcgacgcc 4680 aacccacgac ggctgaacga tgttccccga ctacttaccc gtgagggtca cgagggattt 4740 caggtgcagc gtatcctaga tcgtcgcgtg ctcaaaggca ttattcagta caaagtccgt 4800 tggtacggtc gtgacaacaa ggatagctgg gagccggagt ccgagttgac acaagcaagc 4860 gggcttatcg ccaattttct acaagatcaa cagtcaactt cgcgtagatt gcgctctggt 4920 gacccctgac ttgtttcgga ggagagac 4948 // ID Gypsy-21_PSo-LTR repbase; DNA; PLN; 188 BP. XX AC AAQY01000781; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PSo_; KW Gypsy-21_PSo-I; Gypsy-21_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-188 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000781; Positions 37318 37505. XX SQ Sequence 188 BP; 40 A; 56 C; 49 G; 43 T; 0 other; tgtgacaggc cactatcaca caggcgccac cgtgtgcgcg cggtggccaa tcagagccca 60 ccataggttt aatggctggc acggtgtcga gtgccgagac cgtctcggca cttaatacca 120 gagttcaatt tgcctactac ttcctctgct tgtgtaacca cgtaacgggc tgcagttagc 180 ccgttaca 188 // ID Copia-25_PIT-I repbase; DNA; PLN; 6111 BP. XX AC AATU01002213; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-25_PIT_; KW Copia-25_PIT-LTR; Copia-25_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6111 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002213; Positions 91423 97533. XX CC Positions [3020-3520] - Integrase core CC 'GACCG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 344..4930 FT /product="Copia-25_PIT-I_1p" FT /translation="MDNTFPGGRYDDKELAEYAKALRNSPDILLPKLVIKA FT DYKAWRSKVPLHFEPRTLGAITYGGERFDAALGYQRPKYNEWYCARKNKAF FT SALALSLSVDLRSKFKIDEMRDNVEAASILWTYITKHFEAGDGINPDYLMR FT DLMTRMLQTNESVTVYVDDIERKVTMLRQAKGEFEEWQHASLLLSNVVLVF FT RDLAREHANWINSNDRKSLKLTEALQRLRSAEHLRNQLELQSRPATDVARP FT MQVAHVAGGQGASRGNGNNRKRGKLQRKQMKAVVDKKQRTQCASCSGDGHW FT YAECTDQTGKPLKAELARKLAEKKQSRKPPASLVGSVRRVQVVQGESDAQG FT LTTGVSLCAGSDTETVDLTGNASPDAEASPVYSPTSPASPNDDDQAGLNLP FT NSTMATSQQLELEEKPPAVPALADVAVQQAVQTLVTDAVQRQWEGVQSQGS FT VPTWQKILLHISQELKGVSNVEPLPEPKHNKGGSQGGPLVRGDGIQGIHLD FT ILRSQGHDESYGNQMQLSPYQQGRQYGREARGRSPLRDEPMYFNRGRSRSP FT PGMQGWRGRSPPRGRTDALPWGPPRRSSSPPPRWGGRLSSPPREPPSHYGP FT QPRQQWRNDPPSRYGPQLPQQQQWRDGPPRERGPSPPRGGGRSYDEHGYRD FT GNRRRDMSPRRSPRRFAGPPCDGSTRSWQVNAVAHNQGMQCDAVEWILDSG FT SQANVCGDLALFTTIREDSASRLAFANGTTEHASVCGSVLLRVMKQATGMM FT EDRLLDDVVYTPNAKVNIISLGYLQMTGKYKLTCSHDQRTAWMSKPGTILK FT FAMHENIYRLRTERVPGVMVMAALKQNFDSKKSMELLHQRFGHASMDTVRV FT LLNKLDVGVKMNANGLSSYECVACAASKSRRMTHSRILVRKPKPLEKLMMD FT ICTVNEPTIGGAIMFLLIIDESTRYKWAYLLEKKSEATWHIKVLLTQLKTK FT LPKLAVQRLRSDQGGELASTELANYCAENGIEQQFTNAYSPQENGIVERAN FT GIVMPRVRAMLSATSLSNTLWGEALLHIVATLSKLPTKSLGLVTPIHKLFR FT SAPDVDELRIWECIAHVRVPPESRQKKEKLQPRAKLSLLLGYSDTTVGYKF FT LDLETAQVVTARGGNVRFHEEFTANGTYVKQLLENAFHDGDHQLPETVPVT FT RIKTSMVTYLPGKEDVCTAQQLEVLPIADATAENVQSSSGRTSTADSPTTS FT DNAITNSAELQPGVAAPAAVQEPAEETEVATKAKKKRKRRARKKPASTEEE FT VTGFEKQQPPVEPCLKRPRRTQKQSVRLRDYVVGHVLATGMDMKIPTTYKQ FT ARRSKHWLRWKEAMLAELQSLKSHKTWKLVPRAVAKGVKVITCRWVFAVKR FT DERGRIKRFKARLVIHGFKQRLGVDYCETYAPVIRFETIRTAIYYAVQRGW FT EVLQYDVKTAFLYGDLEELIFMEQPPGFQVDGPGFICKLLKSLYGLKQAPN FT IWNKTLHTKLMTMGFERMDSDYGLYALKENGEVKLLLTVYVDDLLLMGPRE FT VCLEVAASLQRDV" XX SQ Sequence 6111 BP; 1609 A; 1465 C; 1736 G; 1301 T; 0 other; ggttatgagc ccaatcaggg cgcagaactc ggctgacgtg tcagctggtt tgaacaacaa 60 cgactcgaga gaccaagcgg aagtttcgtc gaatcgaagc caaggatcgc aaggattggc 120 tggagatgca actgtgggtg gtgacacacc actgtcgcac aacgagattg agcatttcat 180 tcgatcattg gtccaaagta cggatggtca acctttcatc cgaaggttgc ttgaaggtat 240 gcaagatttt cattctgcgg aagtctcaaa ttaacggcag ccctagacag aggaacagcg 300 cgacgtctgt ggagcaagtg agaactggcg tgaggaagcg ggcatggaca acaccttccc 360 cggcgggaga tacgacgaca aggaactggc ggagtacgcc aaggcactgc ggaactcccc 420 ggacatccta ctgcccaagc tcgtgattaa ggccgattac aaggcgtggc gcagcaaagt 480 gccgctacac ttcgagccac gcacactcgg tgccattacg tacggtggtg agcgctttga 540 cgctgcgctc gggtaccaga gacccaagta caacgaatgg tactgcgcac gaaagaacaa 600 ggcattttct gcactcgcac tgtcgctgtc agtggacttg aggtccaaat tcaagatcga 660 tgagatgagg gacaacgtgg aggctgcgtc tatcctatgg acctacatta ccaaacactt 720 cgaggctggc gacggaatca accctgatta cctgatgcga gatctcatga caaggatgtt 780 gcaaacgaac gagtctgtaa cggtgtacgt cgacgacatc gagcgcaagg tgacgatgct 840 gcgtcaggcc aagggcgagt tcgaggaatg gcagcacgcc agcttgctgt tgtcgaatgt 900 cgtgttggtg tttcgtgacc ttgctcgaga acacgcaaac tggattaaca gtaatgatcg 960 caaatcattg aagctgacag aggcgttgca gcgtctccgg tcggctgaac acctgcgcaa 1020 ccagctcgag ctacagtcga ggccggctac tgatgtggca cgccctatgc aggtggccca 1080 tgtcgctggt ggtcaaggtg caagtagggg taacggcaac aatcgcaagc gcggcaagct 1140 gcaacgcaag caaatgaagg ctgtggtcga taagaagcag cgtactcagt gcgccagctg 1200 cagtggtgac ggtcactggt acgctgaatg cacggatcaa acgggcaaac cactcaaggc 1260 agaactagcg agaaagcttg cagagaagaa gcaaagcagg aagccacctg cttcactcgt 1320 tggctctgta cgtcgtgtgc aagtcgttca aggtgagagt gatgctcaag gtctgactac 1380 tggagtgtcg ttgtgtgcgg gaagtgacac ggagactgtg gacctaactg gcaatgcgtc 1440 accagatgcg gaggcgtcac cagtgtactc gcccacatct cctgcaagcc cgaatgacga 1500 tgatcaagca ggactgaacc tccccaatag taccatggct acctcgcaac aattggagtt 1560 ggaagagaag ccgcctgcag tacctgctct agctgatgtt gcagttcaac aagcggtgca 1620 gacacttgtg acggacgctg tgcagcgcca gtgggagggc gtgcagtctc aaggatcagt 1680 acctacgtgg cagaagatac tgctccatat cagtcaagag ctgaagggcg tgtcgaatgt 1740 tgaacctttg cctgagccga agcacaacaa gggtggatca caagggggtc cgctcgtgcg 1800 cggagatggc attcaaggga tccatttgga catactcaga agccaaggac atgacgaaag 1860 ttatgggaat cagatgcaac tgagtccgta tcagcaagga cgtcagtacg gacgtgaagc 1920 acgtggacgc tctccacttc gtgatgagcc tatgtacttc aatcgaggac gcagtcggtc 1980 accacctggt atgcaaggtt ggcgtggcag atcgccacct cgtggacgca ctgatgcttt 2040 gccgtggggg ccaccgagac gcagttcgtc acctccaccg agatggggtg gacgtttgag 2100 ctcgccacct cgtgaaccac ccagtcatta tggacctcag ccacgacagc agtggcgtaa 2160 tgacccacca agccgctatg gaccgcagct gccccagcag cagcagtggc gtgatgggcc 2220 acctcgtgag cgtggtcctt cacctcctcg tggtggtggc agaagttatg atgaacatgg 2280 ttaccgcgat ggtaatcgta gacgtgatat gtcacctcgg cgctctccac gtcgatttgc 2340 tggtccaccc tgcgatggat caaccagatc atggcaagtc aatgcagttg cccacaatca 2400 aggtatgcaa tgcgatgcgg tcgagtggat cctcgattct ggatcccagg ccaatgtatg 2460 tggcgacctt gctctgttca ctaccatacg tgaggacagt gcaagtcgtc tcgcctttgc 2520 taacggcact actgagcatg catctgtctg tggttctgta ctactgcgtg taatgaaaca 2580 ggcaactgga atgatggagg atcggctact ggacgacgtg gtgtacactc ccaacgctaa 2640 agtgaacatt atcagtctag gctatctgca gatgaccggg aagtacaagc tgacgtgctc 2700 gcatgaccag cgtacggcct ggatgtccaa gcctgggact atactgaagt ttgcaatgca 2760 cgaaaacatc tatcgtctac gtactgagcg ggtgcctggt gtaatggtga tggcggcact 2820 gaagcagaac tttgacagca agaaaagcat ggagctgctt caccagcgct ttggccacgc 2880 cagtatggac actgtgcgag tacttttaaa caagctcgat gttggagtaa agatgaatgc 2940 aaatggtctt agctcctacg aatgtgttgc atgtgcggct agcaaatcga gacgcatgac 3000 gcactcacga atattggtga gaaagcccaa gccactagag aaactcatga tggatatctg 3060 tacggtgaac gagcctacga ttggaggtgc catcatgttt cttctcatca ttgacgagtc 3120 aactagatac aagtgggcgt atttacttga aaagaagagt gaagcgacat ggcatatcaa 3180 ggtgctgttg actcaactga agacgaagct acctaaactt gcggttcagc gattgcggtc 3240 ggaccaaggc ggcgaacttg cgagtactga gctggccaat tactgtgcag agaatggtat 3300 cgaacagcaa ttcacgaacg cctattcacc acaagaaaac ggaattgtgg agagagcaaa 3360 tggcatcgtg atgcctcgtg ttcgggctat gctaagtgct acgagtctat caaatacgct 3420 gtggggtgag gcactactgc atatagttgc cacactgagc aaactaccga caaagtcact 3480 ggggctggtc actccgattc acaagctatt tcgaagtgca cctgatgtcg atgagttacg 3540 aatctgggaa tgtattgcac atgtgcgtgt gcctccggaa tcaagacaaa agaaagagaa 3600 gcttcaacca agggcaaagt tgtcattgtt actcggctac agtgatacta ctgttggcta 3660 caagtttctt gatctggaaa cagctcaggt ggtcactgct cgtgggggca acgtgcgctt 3720 ccatgaagaa ttcacggcga acgggacgta cgtgaagcag ctgctggaaa atgcattcca 3780 tgatggagac catcaactac ctgagactgt tccggtgaca cggataaaga cgagcatggt 3840 gacatatctg cctggaaagg aggacgtgtg cactgctcaa caacttgaag tgctaccaat 3900 agcagacgct acagctgaga atgtgcagag ttccagtggg agaacgtcga cggctgactc 3960 acctacgact agtgataatg cgattactaa cagtgctgag ttgcagcctg gtgttgctgc 4020 accggctgcc gtgcaagagc cggctgagga gacagaagtg gctaccaaag cgaaaaagaa 4080 gcgcaagcga agagcgcgaa agaaacctgc ttcaactgag gaagaggtga ccggatttga 4140 gaagcaacag ccaccagtcg agccatgcct aaaacgccca agacgaacgc agaaacagag 4200 cgtacgacta cgagattatg tggtaggcca tgtgctggcc actggcatgg acatgaagat 4260 cccgaccacc tacaagcagg cgcgtcggag caagcattgg ttgcgatgga aagaagccat 4320 gcttgcagag ttgcaatcac taaagagcca taagacatgg aagttggtac cacgagcggt 4380 agccaagggc gtcaaagtta tcacgtgtcg ctgggtgttt gcagtcaaac gagatgagcg 4440 tgggagaatc aagagattca aagctcgtct cgtcatccac ggctttaagc agcgcctggg 4500 ggtggactat tgcgagactt atgcaccagt gatacgattc gaaaccattc ggactgccat 4560 ctactatgca gtgcagcgtg gctgggaggt tctacaatac gatgtgaaga ctgcatttct 4620 ctacggagat ttggaggagc tcatctttat ggaacaaccg cccggcttcc aagtggacgg 4680 accaggcttt atctgcaagc tcctcaagag tttgtacggt ttgaagcagg caccgaatat 4740 ctggaacaag acactacaca caaagttgat gacgatggga ttcgaacgta tggactctga 4800 ctatggtctg tacgcactga aagagaacgg tgaagtgaaa cttttgttga cagtttacgt 4860 ggatgatcta ctgctgatgg gaccacgtga agtatgcctg gaagttgctg cttccttgca 4920 gagagacgtt tgagctgact acgatgggag cagtgaagta tctcctggga gttgagattc 4980 tcattaatcg gccgcgccga cagattatct acagtcagcg gcagtatgta ctggagatcc 5040 tcaaacgttt ccacatgtcg gattgcaatg ggtgtgcgac acctgagtcg gcgacccttc 5100 gacaatggct gtacctacga gcaaggaata cctgccttat cgagaactag taggtgcatt 5160 gcagtaccta gtcagtgcct cgcggcctga cattgcacac gcgacgcgac atcttggcaa 5220 gttcctagcg aactacaatc attcacactt tgcccaagcc aaaagagtac tacgctacct 5280 caaggctacg aataattacg gacttgtgat ggacgtgcaa cttggaacga gtgttcgcat 5340 ttgctgctat tctgatgccg actacgcaaa cgatcctgct gatcgccgca gtatcagcgg 5400 ttacgttagc atgctggatg gcaatgtgat ttcctatgct tcacggaagc aggagatcaa 5460 cgcactaagc acgtgtgaag ctgagtatgt ggcgatgtca gaagctacca aggatctact 5520 atggtaggct ggtctatgca atgagctagc ctggaagcac ccaacacctt tgctgctggg 5580 tgacaacgag ggagcaatct cgttgagcac caagccaggc aagcactcga agtcgaagca 5640 catcgacaat aagtaccaca tggtgcggcg tagcgtggag ctagaaaagc tcactacgca 5700 gcacgttggt actaaggaca tggtggatga cacgatgaca aaagcgcttg ctgtcgtgaa 5760 atttgcgcac tttcgtaagg ccatgaaggt cttaccgatt gtgatgaagg acgctaaaaa 5820 cgatgaggac ggtaaggaca gtgaagatgg caccgcaacg acacgcgagg caagtgcctc 5880 aactacggct gctatgacga ctgttcgcca tcactagatg cttctactca agctgcaaca 5940 tttgatgacc aaggagaagg atacgtactg atgctacact tgcgtggctg gctgtacgcg 6000 tggagctttg acctatcctg ctttcgagct tagtacgggt gacttgtccg cgatcgtagc 6060 tacgagtgtg atcgcgtcga cttgactcac gtcgccgaga tcaagtggga g 6111 // ID Gypsy-23_PSo-LTR repbase; DNA; PLN; 826 BP. XX AC AAQY01000032; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_PSo_; KW Gypsy-23_PSo-I; Gypsy-23_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-826 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000032; Positions 69273 70098. XX SQ Sequence 826 BP; 175 A; 226 C; 251 G; 174 T; 0 other; tgtggtgtag gaaacaccag atttcgcgcg accaactggg ctggagtggt acactgtacc 60 ggtagccgag ctcagccgag ctcagccgag ttcaccagct tatccggaca ccttattcgg 120 ctcagccgag ttcgaagaat tgtccggata gctcatccgg accagcctag ctcaggcgtc 180 gccaagctca gcgaagagtc ggccgagatc caaaaccgcc cactttcatt tggtatttgt 240 attggagctt aggaatagtg gaggtgcccc ttcagggcgc ccgacagaga taacaaacaa 300 cagagcagaa ttttctaggc ctaaagcatg tgtacacgtt ccggtaagtc cctgcacggg 360 gccggattat gtctgctgcc ggtacccgag aggcatagct tgtagggtac tcggctggca 420 gcaccaagag attaaggtcg gcccgggttg ggcgcgagtc ttgccaagcg cgaaggaaag 480 tctcgccacc gctgcgagcc ggtgttcccg tacgtcccgg gcactgattg ctgagtcgag 540 aaacctttgc tctcggcgac ctgtaaaagc gctccgtacg ccgtcgtcca tcctttggtg 600 gagggctcag ggttgagtga acggaggccg tcgaactcgg cggttctccg gaggagtgat 660 cttggttggc agatctcggc gagaggcgag acacccgctg tcccggttgg gccgaaccgc 720 tcgggggcaa cctggcgcag gccaacaaag ccgaccagct cggctattgt tgtgtttgta 780 gtcaagttac cacaactgac gattttgtgt gtactgctat accaca 826 // ID Gypsy-9_PPa-I repbase; DNA; PLN; 6060 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-9_PPa-I; Gypsy-9_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-6060 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 967-967 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 57..2468 FT /product="Gypsy-9_PPa-I_1p" FT /translation="MGDQVPGFGLPSGVGAHDLFRAFAQFMEERQQVHGED FT KNTTKALQVVVDKVGRFDGRNITKFLRVYTCEMEVHQVSEVKMISTFDLAV FT VPEIRERVQELHTETISWKKFEELLKDEFFEEDSERMTKQTFLDWIEQRPG FT NQMAPNELIREFEAKFGQLPRQERQLLETRKTGLFLQAADEHLEDKLLFYL FT ADKTSESGFTNDWKLVKETVGLLARQQKIKTRGLLPRLEPMPASQNLMPPQ FT NGIKTVKDGTLEELIKGIQDLKVEMTELKKSQMASSSKTIEGSKGFIERCM FT WCDNPNHKRGECDSYKAAIKDGIVYFKEGRIRLTGSDEPLKTNFGKGGMKK FT LVEEQTSKNSAIKGEGAESYSITVEQKGVKAVSLPTKGVMMRGAEAIRKKT FT GWNDPVDAISIKAYLCGDKHDDDMHDAMVEEKRGRTIHEEDVIEPENKRRS FT PRNKEASKEQKTEKVSSSTHPGSAPLPKEWWEKGKEKEKEDTSKPKGKTPA FT YKLQSEIESSTDMKSILEEKILDAKIEFTLREALGIAKKDFHELIINVIKR FT KRQMTAEAIMVEALDTRVTVDEEEEIGQVFAQFAMPETRNKVDMENKVSFK FT HVEGKREHQVECTPLGFTGIRKDAQEASVNTCSKCENEGIESSSYSVPYWA FT RATTETYVRLGDFKDPILALVDHGSEINIMSRKIYEKNKWPIDINHGWVIR FT AANNQQGDLHGACPAVKTRIGDVEVEQNFFVQNSATYPVILGQPYITAARM FT ETRVLNDGSHYARIRSWDGRKAVQFITVKPIHERHREQLRGMPLEPGNNFV FT DF" FT CDS 2498..6013 FT /product="Gypsy-9_PPa-I_2p" FT /translation="MGANDSSTNPSVDSMSFGFLNLSSNGFVSVQKVKDLD FT SINKKRVKKQEKNLKRVGLVSSDEAIVGVIEEIGLEDDLVKVLENLAINID FT GDAIVEIYSRRTYEGLERMVANGGLATNYGLKHEARVQTKYKTVARKVKPV FT ATQLPVDNMEHIKQAVMEPSLRERRRIGHQFTQESLAKLKIGGGDFLTSTE FT EDMFQEMLIRHGKAFALTPDEIGCVDPSIIVPMVIFTVPHVPWDLKPIPVP FT RALLPKLIELLKEKVKMGILEPSIAPYSNRWFTVPKKSGALRFIQDMQPAN FT RVTIRNMGSGPIVDEVAEQFAGHAIYSIGDLYSGYDQFQLAKESRDLTTMK FT TPLGLMRMCTLPQGATNSVAHMQNAMNQILKEFVPEKTIPFLDDIPIKGDK FT EEDKDETMEVEGCRKFVKKHIEDVAQILERLESVNLTLSLEKSSFGVDEIL FT VVGHMCGRYGRKPNPDKIDAISRIKACKNVTEARRFLGACVFYHIWVPHFA FT HISEPLYKLLRKGKKFVWEEEQETAMENLKKMLSSPPVLKQVDYQCERPVV FT VTVDTSPIAIGWAIGQNDVEGRRFAIRFGARVLTKRQRAYPQVKRELWGAL FT TALKAERNYLIGASMVLETDCLPLLGMIINCTTPDIAMLRWIAYIRTLNPV FT LVHITGKENLVADMLSRARYTFEEEMMAYERGEDEEEKNYGSSFATGGMDF FT GDKVQNFYEGTYEGKLKDIGIYLSTMKKQEGWMDKTFKDIRHQSYGYILRD FT GFLWKRPKRGDKIPLRVIGDLETKIKVLREYHDTLWAGHRGVWATYTKIKE FT RYWWKGLYKDVEDFVSSCTECQLQSKVRYRDGLHPTYPPSIHFQWVIDLVA FT MPSGLWGMKYLVLAREELSNYVEGRALRTKTTEAICRFILEDIFSRYGYIG FT RMRADRGELDAIEARDFFKRYGVQLKLTTSYNPEANGKSERGHPPIIYALV FT KACKGKSIQWPKLLPFALWADRTTHSTVTGYMPMELMLGQKPIMPAEATYP FT TWMFLSWEDNINRERLLELRIQQLRRLPEDLQIAAERLKEARLKNKERFDK FT THRLRPKPIEIGDWVLVYDSSLEHQHSTVKKFAKKWFGPYVVVIVHDNATY FT TLRELDGAIIRIPIAGKRVKAFKRRDGRFQIEDLEEFLPQYLDQEHEEEDS FT MSDSKKSQEDEEE" XX SQ Sequence 6060 BP; 2111 A; 823 C; 1513 G; 1613 T; 0 other; tatttggtgc ttccactgag agagccttaa ggcactaaaa ttctcaataa gttagaatgg 60 gggatcaagt tccagggttt ggattaccaa gtggagtagg tgctcatgat ttattcaggg 120 catttgctca atttatggaa gaaaggcaac aggtgcatgg ggaggataag aataccacca 180 aagctttaca agtagtggtg gataaggttg ggaggtttga tgggaggaac atcactaagt 240 tcctcagggt ttatacatgt gaaatggaag tgcatcaggt ttcagaagta aagatgattt 300 ctacctttga tttggcagtg gtaccagaaa tcagagagag ggtgcaagag ttgcatactg 360 agactatatc atggaagaaa tttgaagaac tcttgaaaga tgagtttttt gaggaggatt 420 cagaaagaat gacaaaacaa acttttttgg attggattga gcaaaggcca gggaatcaaa 480 tggctcccaa tgaattaatc agggaatttg aggctaagtt tggacagtta ccacgacaag 540 agaggcagct tttggaaaca aggaagactg gattgttttt acaagcagct gatgaacatt 600 tggaggataa gctactcttt tatctagcag acaagacatc tgagagtggt tttactaatg 660 attggaagct agtaaaagag acagtggggc ttttggctag gcaacaaaag attaagactc 720 gtggattatt accaaggttg gagccaatgc ctgcatctca aaatctaatg ccacctcaaa 780 acggaatcaa gactgttaag gatggtactc ttgaagaact aattaagggc atacaggact 840 tgaaggtgga aatgactgaa ttgaagaaat cccagatggc aagctcatca aagacaattg 900 aaggctcaaa gggatttata gaaagatgta tgtggtgtga caatccaaac cataagcgtg 960 gtgagtgtga tagctataag gctgcaatca aggatggtat tgtgtatttc aaagagggca 1020 ggataagact cacagggtca gatgagcctc taaagactaa ttttgggaag ggtggcatga 1080 aaaaattagt agaggagcaa acatcaaaga atagtgccat aaaaggggaa ggagctgagt 1140 cttattctat tacagttgaa caaaagggag ttaaggctgt ttctttgcca actaaaggag 1200 tcatgatgag gggagctgaa gctatcagaa agaaaactgg gtggaatgat ccagttgatg 1260 ctattagcat taaagcatat ttgtgtggag acaagcatga tgatgatatg catgatgcta 1320 tggttgagga aaaaagaggt agaactattc atgaagagga tgttattgag cctgaaaaca 1380 agaggaggtc tccaagaaat aaagaagctt ctaaggagca aaaaactgag aaggtatctt 1440 cttctactca tcctggtagt gcaccattac caaaagagtg gtgggagaag ggcaaagaaa 1500 aggagaaaga agatacaagc aaacctaaag gtaaaactcc tgcttataaa cttcaatctg 1560 agattgaatc atctacagat atgaagagta ttttagagga gaagatcttg gatgcaaaga 1620 ttgaattcac tctaagagag gctctaggca tagccaagaa ggattttcat gaattaatca 1680 tcaatgtgat aaagaggaag aggcaaatga cagcagaagc tattatggta gaggcattgg 1740 atactcgggt aactgtggat gaagaagaag agataggaca ggtatttgca caatttgcaa 1800 tgcctgaaac tagaaataag gttgatatgg aaaacaaggt ttcatttaaa catgttgaag 1860 gtaaaagaga gcatcaagtg gaatgcacac ctttgggatt tacagggata aggaaggatg 1920 cacaagaagc aagtgttaat acttgctcca aatgtgaaaa tgagggaata gagagtagta 1980 gttattcagt tccttattgg gctagagcta ctacagaaac atatgtgaga ttgggggact 2040 ttaaagatcc aattttggcc ctggttgatc atggatctga aatcaacatc atgtcaagga 2100 agatatatga gaagaataag tggccaattg atatcaacca tggttgggta atcagagctg 2160 caaacaatca acaaggtgat ttacatggag cttgtccagc tgtaaagact agaattggag 2220 atgtagaagt ggagcaaaat ttctttgtgc aaaactctgc tacatatccg gtaatacttg 2280 gtcaacctta tattacagct gctagaatgg agactagagt cttgaatgat ggttcacatt 2340 atgccagaat tcggagttgg gatgggagaa aagctgtgca atttattact gtgaaaccta 2400 tccatgagag acacagagaa caattaagag ggatgccctt ggagccagga aataactttg 2460 tggatttcta aaaagcaccc ttgtaagatg ggggcacatg ggtgcaaatg attcatctac 2520 aaaccccagt gtagatagta tgagttttgg atttttgaac ttatctagta atggatttgt 2580 gagtgttcaa aaggttaaag atttagattc tataaataaa aaaagggtaa agaaacaaga 2640 gaagaactta aaaagagtgg gtttagtttc aagtgatgaa gccatagttg gagtaataga 2700 agaaataggt ttggaagatg atttggtaaa ggttttggag aatctggcta taaacataga 2760 tggagatgct atagtagaaa tatattcaag aaggacttat gaaggattag aaaggatggt 2820 agcaaatggt ggacttgcta caaactatgg gttgaagcat gaggctagag tacaaactaa 2880 atataaaact gtggcaagaa aggtaaagcc tgtagctaca caattaccag ttgataatat 2940 ggagcatatt aaacaagcag ttatggagcc aagtctaaga gagaggcgtc gaattggaca 3000 tcaatttaca caagaatcat tagctaagtt gaagattgga gggggtgact tcttaacatc 3060 aacggaggaa gatatgtttc aagaaatgct tattagacat ggtaaggcat ttgccttaac 3120 tcctgatgaa atcggatgtg tggatcctag tattatagta cctatggtaa tctttacagt 3180 gccacatgtt ccatgggatt taaagcctat acctgtgcct agagctttac ttccaaaatt 3240 gatagaatta ttaaaagaga aggtgaagat gggtattttg gaaccttcaa ttgctcccta 3300 ttctaataga tggttcacag tacccaagaa gtcaggggca ttaaggttta ttcaggatat 3360 gcaacctgca aacagggtga ctattcgaaa tatgggatca ggtcccatag tagatgaagt 3420 ggctgaacaa tttgcaggtc atgccattta ttctattgga gacttatatt ctggatatga 3480 ccaatttcaa ttggctaaag agagtagaga tttaactacc atgaagactc ctttgggttt 3540 aatgaggatg tgtacgctac ctcaaggtgc aaccaactca gtggctcata tgcaaaatgc 3600 tatgaaccaa atattaaaag aatttgtacc tgagaaaacc attccatttc tagatgatat 3660 acctataaaa ggagataaag aagaagacaa ggatgagact atggaggttg aaggttgtag 3720 aaagtttgtg aagaaacata ttgaagatgt ggctcagata ttggagagat tggagtcagt 3780 taatctcacg ttatctttgg agaaatcaag ctttggagtt gatgagattc tagtggtggg 3840 gcacatgtgt ggcaggtatg gtaggaaacc aaaccctgat aagattgatg ctatatctag 3900 aattaaggct tgtaaaaatg ttacagaagc cagaaggttt ttaggagcat gtgtattcta 3960 tcacatttgg gtgccacact ttgcccatat ctcagagcca ctatataagt tattaaggaa 4020 gggtaagaaa tttgtatggg aagaagaaca agaaacagct atggaaaatc taaaaaaaat 4080 gttgagttca ccacctgtgc ttaaacaagt ggattatcaa tgtgaaagac cagtagttgt 4140 aacagtggat acaagcccta tagcaattgg atgggctatt ggacaaaatg atgtagaggg 4200 aagaagattt gctataaggt ttggagctag ggttcttaca aagagacaaa gggcttatcc 4260 acaagttaaa agagagcttt ggggagcgct tacagcatta aaggctgaga ggaattattt 4320 gattggagca agtatggttt tggaaacaga ttgtttgcca ttacttggaa tgataattaa 4380 ctgtactact ccagatattg ccatgctaag atggatagcc tatataagga cattaaaccc 4440 tgttttggta catattactg gtaaagagaa cttggtggca gatatgttgt ccagagctag 4500 atatacattt gaagaagaga tgatggcata tgaaagaggt gaagatgaag aagagaagaa 4560 ttatggaagt tcatttgcta ctggtggaat ggattttggt gacaaggttc aaaatttcta 4620 tgaaggtacg tatgaaggca agttgaagga tattggaatt tatttaagca caatgaaaaa 4680 acaagaaggg tggatggaca aaaccttcaa agatattaga caccaatcct atggttatat 4740 actcagggat ggatttctat ggaagaggcc aaaaagaggt gacaaaatcc cattgagagt 4800 tataggagat cttgaaacta aaattaaggt tttaagagaa tatcatgata cactttgggc 4860 aggacataga ggagtttggg ccacatatac taagatcaaa gaaaggtatt ggtggaaggg 4920 tttatacaaa gatgtagaag actttgtgag ttcatgcaca gagtgccaac tacaatctaa 4980 ggttaggtat agagatggat tacatcctac ttatccacct tctatacatt ttcaatgggt 5040 aattgatttg gtagctatgc cttcaggatt atggggtatg aaatatttgg ttttagcaag 5100 agaagagtta tcaaactatg ttgaaggaag ggctttgaga accaagacca cggaagcaat 5160 atgcaggttt atattagaag acatcttcag cagatatggc tatattggga ggatgagagc 5220 tgatagagga gaattggatg ccatagaagc aagagatttt ttcaaaaggt acggagttca 5280 attgaagttg actacttctt ataatcctga agccaatgga aagagtgaaa gaggtcatcc 5340 tccaatcatt tatgcattgg ttaaggcatg taagggtaaa tcaattcaat ggcctaaact 5400 gcttccattt gctttatggg ctgatagaac tactcatagt actgtcactg gttatatgcc 5460 tatggaatta atgctaggac aaaaacctat aatgcctgct gaagcaacct atcctacatg 5520 gatgtttttg tcttgggaag ataacattaa tagagaaagg ttattagagc ttcgaatcca 5580 acagttaaga agattacctg aggacctaca aattgcagct gagaggttaa aggaagcaag 5640 attgaaaaat aaagagaggt ttgataagac tcataggtta aggcctaaac ctatagagat 5700 tggagattgg gttctagttt atgatagcag ccttgagcat caacatagta ctgtaaagaa 5760 atttgcaaaa aaatggtttg gaccatatgt ggtggttata gtccatgata atgccacata 5820 taccttacgt gagttagatg gagctatcat tagaattcca atagcaggga agagggtgaa 5880 ggctttcaaa agaagagatg ggcggtttca aatagaagat cttgaagaat tcttacctca 5940 atatttggac caagaacatg aagaagaaga ctctatgagt gattccaaga agtctcaaga 6000 ggatgaagaa gagtagtatg tggcacatac cggaggatgt gcaggtttgg agggggtgga 6060 // ID Sola1-1_Psojae repbase; DNA; PLN; 3053 BP. XX AC . XX DT 12-MAY-2011 (Rel. 16.05, Created) DT 12-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Sola1-1_Psojae. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Direct Submission to Repbase Update (12-MAY-2011)Proc Natl Acad RL Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3053 BP; 794 A; 812 C; 803 G; 644 T; 0 other; gagacaacgg caacaaaaat gttacttatc caccatttag agttatcgag ataatcgcct 60 taaaagaggc caggttcaaa atcgtaacta aacgaagtcg tgagaaaacg aggagttttg 120 attttcaaaa atttgaaggg ggtgtatcgg cacggatacc atttcgaaaa gccactcgga 180 ccactaccta cagccatgca gacaccaccc acgacgccga cagcaccgac ctcgcgcgct 240 gcagcgccaa ctgcgcagcc tgcgcaacct ccagcgctgc ctctctcagc ctcgccaccg 300 gccacctcgg cgccaagccc gccagccacg gctccgagtc cgccagccgc gacgtcgggt 360 ccgccagcca cgacatcgcc ctcccaggcg ctgactccgc cggccacaac gtccccctcc 420 acggcgctga ctctgtcggc cacggcaccc cttgctgctc ggcgtcgcga agcagacgaa 480 gagcctgatt ctgccgacga ttctgtctgt ggtgtcgatc ccactgctac cagtgagagt 540 gaggtgaacg aggacagcag cgacgacgac tttacgcctg attcggaggc gtcgcccagc 600 gacgacgagg aaccgctcac agcagagagc gcgagcagtg aagccgaaga tgaagaggat 660 attagtatct ttttgaatga cgcgagtcct cgagcccgtg tgactgaggt gattcatgcg 720 gacgcgtgtg agaacgagtg cgtcaagggc aaggctcgtg agttggagtt cttgctgtgc 780 tcgctggacc agatgacgaa gcaagagcgc accacgagct tgtacacgct cctggctgtg 840 ttgatgcaga cccccacggt tgagcgtaag agaggacggg gtgaccgtga gaagtttccg 900 tacatcctcc cctacgtagg tcatgtgtgc cgacccactt tcgcgctctg ctatggagta 960 gtccccatta ccttgcagcg ctacaagatg cgcatccgag acggtaacat gtcgatcaag 1020 gcgcatggta accggctcaa cacgcatgca gctcaagtga acgttgtttg gctggtgaaa 1080 tggttccagt cgtttgccga ggaggtcggc gaggttgtgc cggttcgagt gcggatgcag 1140 aagaagaaag acggaactac gcagaaatac tacagcagcg agatgtacac gttactacca 1200 gcgcacttca cctgggatac catctacgac gaaatgcaca agtttgttga ggcgggcttg 1260 cgcgtccgtg aacccgctcg gtcgacaatg aggaagcttt tgacgcttca ctgtccaacc 1320 atccgaattc ggtcgccacg tagtaacgtg tgcgacgtct gctccattta ccacgctgga 1380 atgcgcggcg gcgtaaccag tgacaagacg gaggcgctgg ggcggcacac agaatctgcg 1440 cgtcgaatgc ggtaagtttt gtatacggac ataagaaaca ttttgattta ctcggcagat 1500 ttacctggat gttagtaaca ttttgtttga tggctgacag gcgggagtac aagacggaca 1560 agacttctac cgatgtcaac cacgctgtca tcgtgatgga tttttcccag aacttgacac 1620 ttccgagcgt gtcaaacacc ccctcgcagt ggtacttttg ctcgctggtc tctgtgagct 1680 gcttcggcat cttttacgag aacgaaggaa tccaaaccaa ctatctgtac gacgagactt 1740 cgagcggtaa agggagcgac cagattaact ccatgctggc tcatttcatc agcaccaaga 1800 tcataccggc ggggaagact cggctgaccg tgtacgccga caactgctca gggcagaaca 1860 aaaacaacta cgtgatcaag tttctattgg cgcaagtaca catgggagct ctacagcacg 1920 tggactacaa gttctttgtc aaagggcaca cgaagaactc ctgtgaccgt ggtttcggcc 1980 acatccgcaa gcacgtggcc aaagtggatt gttggacgat ggaccatctc gtagaggctg 2040 ttagttcggc gtccaagagc tcaatcacgg tgcatctgcc tcgcggaagc tcagcgttca 2100 agtcctacaa acctattctc acctaattgt acaaacgact tgacggcatc cagaagttcc 2160 agattttcac gatggacgca tcgcagccgg gcgtcgttgt ctgcaagaaa ggccccgaga 2220 gcgaacctgt agagattagt ttgagccgtc aaattgacgg gatcttcacc acgaaggaga 2280 aggtgcagcg gatgatgacg gaccatatcg agacgctgtc ccctcctgtc cgcaacaccg 2340 agaaaattgc gcagatgtac cacaacatca ggccctacgt tcctgctgaa tttcagagcg 2400 atcccctcta cgccaagcct agcgagcagg aaggagaaga tgccaagtca cggaaacaag 2460 cacgacgtga gcatcgcgcg gcaatggccg tggcggctaa ggctaaccaa gaccagcgtg 2520 gtatcacgga ggctgttgcg acgaaaaaga acccagcaaa gaagagggct actgcagcaa 2580 agaagacgca aaagaacaag aagcacaaag ctactgcgga tctgcctgct gagcaagaat 2640 aggcagccca aggttgtagt cgatcattat gatacttatg tccacagttc attcaaaatg 2700 ttacttacat ccagatatca aattttctaa aacaattcaa aaatataccc ctggtgattt 2760 gaagtgacgg cacaaaagtg agattctaac actgttaggc ttcgaattag ctaaaacgga 2820 caacattgtc ggattcgctg actaatttta caccagttca tcaaaaaaaa aatttccctt 2880 tcggggttga agtcggacat atattttttg acggtctcgt tctcggtcgt ttcttcatac 2940 cagaagctcg ggaggggctc aaacgaaaga ggagacatcc ctctttccaa ttatgcgcct 3000 aaatcgcgat tcgtacttag gttgataagt aacattttgt ttgccgtcgt ctc 3053 // ID Copia-41_PIT-I repbase; DNA; PLN; 6106 BP. XX AC AATU01009464; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-41_PIT_; KW Copia-41_PIT-LTR; Copia-41_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6106 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009464; Positions 4594 10699. XX CC Positions [2147-2689] - Integrase core CC 'CCTTT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 587..4762 FT /product="Copia-41_PIT-I_1p" FT /translation="MERKTRSFLISTIDDAHVLLVEGCTSAYAIYQKLRDR FT YEGSSAHGDPYYINHYLMTIKYEEGTDLMAFFIELERALKDAAEATGIVMT FT DEQKSLYLYHAMPSSWKPDLAIWKGSKKFIPYTDLKTNIERKVLDDYAKRK FT YIIDKGSPESRATSNETALKAVHNAPDGRDDPAPPASACTYCQRPNHAIRD FT CRVLQKHLRTGTVKEGTVLPANFAIIERKPRDDKTPFPAKHPRYQRSGDRQ FT RPSGRPDQGSQPWKAPEIYDRFGNPVNYQELQRKYHSREREAGLIAYTTIL FT MPDIGLSATSSDPHDPTWTVDSGCTRHAAYQESWFKEIRPYAGTIMVGGKQ FT QLPIRGIGDIILEVVDSEGTTRQLEFCDVLFVPDMKFNLLSIAQVLKMGIR FT LVFSRTRCTFFVGKNYKLHVELAADMDLFQLRAKTPPKTPPTALVSSDSAD FT DNPVKALVAPPGMDPNVLLWHKRLGHPNFRAMQTMSKTQAAPELAFTQASA FT IPKHFCPSCIFAKAHRAPFNSNVDRSKSPLEKVHSDINGPLPYPSLSGAHY FT FITFIDDYSRFMHLYVVAHKSDLYDCYEKFRKAAKNRFNTEVSTLETQFNQ FT YDPEVQRLQSDNGKEYEKLGKIIFDRYGTHAQFTNAYTPQQNGVAERRMRT FT ILERVRALLIDGDLPRQLWGECCQYVTHLINVTTSSVLPKGVTPYELWHGK FT KPSLAHIKVFGCAAFALIPEPHRNKLQARARLCRFVGLPQNKKGYRLLSTT FT ENRIIYSRDVTFKEETFPNLTFLERATPDPLSTSLPVQKELLPSLSALLKR FT NHASLVATDADVCPSSPKKIKHPDADVVYSKALLLNESIDLEEEQTHRHTI FT ITLLAARYDPEPKTYKDAMGSPHASDWHAAALSEYHSLMHNRTWTLVPRPH FT SRKVLQCRWVFVRKRDAAGSIVRFKARLVIKGFQQKYGIDYTEIFSPVVRM FT EVLRLLLTLAAILDYEIEQMDVKTAFLNGSLDVEIFMEQPEGFKSKSHPEL FT VCSLDKSLYGLKQAPRVWYYTFAQYLERLGFRRLIKDRCVFFKVIFNAPCY FT ISVYVDDLLIISPSKQVVARVKSALSSEFHMTDLGGVSYLLGWTIERNRAT FT RSIFIHQKSYATKVLDRFNMLGSYPTSTPIIQKLSASDCPDNEADKANMAA FT MPYREAVGGLMYLMTGTRPDLAYFLREVSQYLGNPGKSHWKAVKHGLRYLK FT GTTDFGITLGGVENLELLQSDEYLMAYTDSDYASCQDTRRCIGGYITMFCN FT SPISWVSRRHHTVVLSTTEAEYIALCYCMQELMYIKLLLRELGYDSSKPTL FT ILEDNQSCIKICNNPELHGRSKHIDIKYFFVQEKVARKEFTINYCNTTKMC FT ADIFTKPLAKPSFEKMRELLRVNRPHPMQ" XX SQ Sequence 6106 BP; 1607 A; 1688 C; 1377 G; 1434 T; 0 other; ggttataagc ccaacgttgg ggaggaccag tgaagacttt ccgcgcctta acggatccaa 60 cttcgcagtc tggaacgctc gtgtccgcgc tgctctcgac ggtcaaggtc tgttaggctt 120 catcgaccaa gaagacttcg acggagactc tgactcggcc agctctgacc tcgacgagat 180 cgaacccctt ccacccaagc ccgatgctcc accgtctccg acgccgtccg aagccctact 240 tgactctgac accgggacgc tgccgccaaa cgacagcccg accgaagatg ctgatggtga 300 caccaccgga cgtaaacccg acccgtcatc ctctgaagat ccatcggatt cgtcttcggg 360 caactcatcc gatccaaagg tggatacacc caaacccgcc cgcccgacta agacggcctc 420 caaggcccag tcgagcctcc cggcgatcaa atcctttgcc gacactaaac gtgagaagga 480 cagacgcaga gcattgctcc gcgcgaaggc caagcaagct tgagcaaagc tccgagccgc 540 caaaaaacgt gccgctcgaa aaccgagctc acgtgaaaga cgccgcatgg agcgcaagac 600 tcgatctttc ttgatctcca cgattgatga tgcgcatgtt ctccttgtgg aaggatgtac 660 gtcagcctac gcgatttacc agaagctgcg tgatcgctat gaaggctcgt cagctcacgg 720 tgacccctat tacatcaatc actacttgat gaccatcaaa tatgaggagg gcaccgattt 780 aatggccttc tttattgagt tggagcgtgc gcttaaggat gctgcggaag ccactggtat 840 agtgatgact gatgagcaaa agtctctgta cttgtaccat gccatgccca gctcgtggaa 900 accagacctt gcgatctgga agggaagcaa gaaattcatt ccctacaccg acctgaagac 960 caacatcgag cgaaaggtgc ttgacgacta tgccaagcgc aagtacatca ttgacaaggg 1020 tagcccggag tctcgtgcga cttccaacga gactgctctc aaagcagtgc acaacgcccc 1080 ggatggtcgt gacgatccag ctcccccagc aagcgcatgc acgtattgcc aaagaccgaa 1140 tcatgcaatt cgtgactgtc gcgtgctgca gaagcacttg cgcactggta ccgtgaagga 1200 aggaaccgtc ctccccgcga acttcgccat cattgagcgg aagccgcgag atgacaaaac 1260 cccgtttcct gctaagcacc ctcgctatca gcgttccggc gaccgccaac ggccctcagg 1320 acgtcctgac caaggctccc aaccctggaa ggcacctgaa atctatgacc gttttggcaa 1380 cccggtgaac taccaagagc tccagcgcaa gtatcactcg cgcgaacgtg aagccggcct 1440 cattgcctat acgaccatct taatgcctga catcggtctc tcggctacgt cctctgatcc 1500 tcatgaccct acatggactg tcgactcggg atgcacccgc catgctgcct accaggaatc 1560 ctggttcaaa gagatccgcc cttatgctgg caccatcatg gttggcggca agcagcaact 1620 ccccattcgc ggcatcggtg atatcatcct tgaggtggtc gactctgagg gtaccactcg 1680 ccagcttgag ttctgcgatg tccttttcgt gccggacatg aagtttaatc ttctgtctat 1740 cgctcaggta ctgaaaatgg gcattcgact cgtattcagt cgcacgagat gcacgttctt 1800 tgtgggcaag aattacaaac ttcatgttga gctcgctgcc gacatggact tgttccaact 1860 cagagccaag actcctccca agacgcctcc aaccgcactc gtgtcttcgg attctgcgga 1920 cgacaacccc gtcaaagcct tagtggctcc accaggtatg gacccaaatg tattattgtg 1980 gcacaaacgt ctcggtcatc ctaactttcg tgcgatgcag accatgtcta agacccaagc 2040 ggctcctgaa ctagcgttca cccaagcatc tgcgatccca aaacacttct gcccttcgtg 2100 catctttgct aaagcccatc gtgctccttt caatagcaat gttgatcgtt caaaatctcc 2160 ccttgaaaaa gttcattctg acattaatgg ccctttgcct taccccagcc taagtggcgc 2220 acattatttc atcacattca ttgacgacta ttcgcgtttt atgcacctat atgttgttgc 2280 gcacaagtct gatttgtacg attgctatga aaagtttcgt aaggcagcca agaaccgttt 2340 caacactgag gttagtacac ttgaaaccca attcaaccag tatgacccag aagttcaacg 2400 gcttcagagt gacaatggaa aggaatacga aaaattaggc aagatcatct ttgatcgcta 2460 cggcacccat gctcagttca caaacgcata cacgcctcaa caaaatgggg ttgcggagcg 2520 ccggatgcgc accattctcg aacgagtgcg agctctactg attgacggtg acttacctcg 2580 ccagctttgg ggagagtgct gtcaatacgt cactcatctt attaatgtga ccacaagtag 2640 tgtactccca aaaggagtga caccgtatga gctctggcac gggaagaagc catccctagc 2700 gcacatcaaa gtttttggtt gtgcagcatt tgctctcata cctgaaccgc atcgcaacaa 2760 attacaggca cgggctcgat tgtgcaggtt cgtcggccta ccgcaaaaca aaaaaggata 2820 ccgccttctc agcacgacag agaacagaat catctatagc cgagatgtta cgttcaaaga 2880 ggagacgttc cccaacttga cgttccttga acgtgccacc ccagacccac tcagtacgtc 2940 tttacctgtt caaaaagaac tcctaccatc actaagtgca ctcctcaaac gaaatcacgc 3000 ctctctggtg gccactgatg ctgacgtttg tccctcttct ccaaagaaaa tcaaacatcc 3060 agacgctgat gtagtatatt ccaaagctct attgctgaac gagtctattg acttagaaga 3120 agaacaaacc catcgtcata ccatcattac tctcttagct gctcgctatg acccggaacc 3180 aaagacctat aaggacgcaa tggggtcacc gcatgcatct gactggcacg ctgccgctct 3240 ctcagaatac cattcgctca tgcacaacag gacatggact ctggtgcctc gcccgcacag 3300 ccgtaaggtt ctgcaatgcc gatgggtttt cgtacgtaag cgcgatgccg ctggtagcat 3360 tgtgcgcttt aaagctcgcc tggtcatcaa gggtttccaa cagaagtatg gcattgacta 3420 tacagagata ttttcacccg ttgtacggat ggaagtcctc cgactgctgc tcacgcttgc 3480 agcaatcctt gactatgaaa ttgaacagat ggacgttaaa acggctttcc tcaatggttc 3540 acttgatgtt gagatcttta tggaacagcc cgaaggtttt aagtcgaaat cgcatcctga 3600 actcgtttgc agccttgaca agagcctcta cggcctcaag caagcacccc gagtctggta 3660 ctacactttc gcacaatacc tcgaacgtct tggtttccgt cgcctaatta aggaccgttg 3720 cgtattcttt aaagttatat tcaatgcacc ctgttacatc tcggtctacg tcgatgatct 3780 actaatcatc tcaccgtcca agcaagtcgt tgcacgagtg aaatcggccc taagctcaga 3840 attccacatg accgatttag ggggagtatc ctacctcctt ggttggacga tagaaaggaa 3900 tcgtgccact cgctctatct tcattcacca aaaaagctat gccaccaaag tgctagatcg 3960 cttcaacatg ctaggaagtt atcctacgag cacaccaatc atacaaaagc ttagtgccag 4020 cgattgccca gacaacgaag cggataaagc taatatggca gcaatgccat acagggaagc 4080 tgtgggtggc ttaatgtatt taatgaccgg cacaagacct gaccttgctt acttccttcg 4140 tgaagtcagc cagtacctgg gcaacccagg gaagtctcat tggaaggccg tcaaacatgg 4200 tctgcgctac ctaaaaggca caacggattt tggcataact cttggaggag ttgaaaacct 4260 agagcttcta cagtcagacg aatacctaat ggcatacacg gactcggact atgcgtcgtg 4320 ccaagacaca cgccgctgca tcggtggata tatcaccatg ttctgcaata gtcctattag 4380 ttgggtctca cgccgccacc acacagtggt gctatctaca acagaagcag agtacatcgc 4440 actctgctat tgcatgcaag agctgatgta cattaaacta ttgctaagag aactaggcta 4500 cgacagctca aaacccacat tgatactgga agacaaccaa agttgcatta agatatgcaa 4560 caaccccgag ctgcatggca ggagcaagca tatcgatatt aagtacttct tcgtacaaga 4620 gaaagtagcg agaaaagagt tcactatcaa ttactgtaac acaactaaaa tgtgtgcaga 4680 catcttcact aaacctttgg ctaagccatc atttgagaaa atgagagagt tactacgtgt 4740 aaaccgacca cacccaatgc aataataaat gagactctat gtggtgaagg cattgtgttt 4800 aatgtccaag attttaaaat tcaccgtaaa atccacctca gacatacttg ggcatttact 4860 tacccgcggc gattgaagac gcgaaatggg cgtacaaacg cgtagaacac aatccaattc 4920 tgctcgtcga tggatttctc cacgatgttg ccgtcggtgt cttcatcgaa tatggagcgc 4980 ttctggccgc cgtctgccac gcaaagaacc acacaatgtc cgtagaagtt tcggttgtac 5040 gcacccacta ggtagcatcc atcttcgaca accaggtctt gataaaagcg ggtccacggt 5100 gaccaccagg cgccaagttt ttctgaaagc agttgatgac taggtcacac cgagcggcac 5160 gtagtcgagg aagcaacttt gcaaactgtt tccaggtgca gccttgcaac aagtcacgac 5220 cttccttgag ctcatcatcg agaaacttgt cgactacgtc ttcagggata agatttggtc 5280 gtccgataac acgagcgccg atcttgaggc cgttgaaaag acagttgtag ttatcgctag 5340 cgtcccaaaa tgcgcttgcc gaactcgtcg gtcttgcaga actgctgaaa gtgcttgacg 5400 ccgctcttct tgaatcgctc cgcgagcttc acttcttcac tgtgagtctc catcaacaac 5460 gcagcaggtt cccagcgtcg atatcgccga ctttgaggtg tggggcgcca gtcccaaagg 5520 acacagacct ccgagatctc tcctttacta ttgtagcgga cgtcgtcgat ctgccatact 5580 tggtacttga catctggatc atgcacccac atattctcct cggctgtagg ctcgtcctcg 5640 tcgctactaa acccatcctg cgaaccgaca ccaacagagc actcactctc gagatcatca 5700 ctgcagaagc tctcttcgac ctctgagtca ctgcacgggg agtcctcgct ttcatcttcc 5760 ccagaagaca gaatagtcgg tggttgtagg cgctgcttct tggcaggagg ctgaaggctc 5820 tgcttcttat cagaaggctg tactcgcttc ttctttccca gtgtttgagc agctggtttg 5880 gggggcattt tcttactatc tacttctcag aaatttgaaa aaaaaaaaaa aaaaaggtca 5940 gtagaatctt ccaaaatgtg tcgtagagcc tttacatatt taactgtaag aagactccag 6000 cagcaaccac actttctaga ttctagttaa atctagaatt aaactggcta catataccca 6060 gcttccgagc cgttcgtaca agtggtaatt ttggcgacag gggaag 6106 // ID Gypsy-11_PIT-I repbase; DNA; PLN; 6990 BP. XX AC AATU01000605; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PIT_; KW Gypsy-11_PIT-LTR; Gypsy-11_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6990 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000605; Positions 11730 4741. XX CC 'CCGTT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 42..1073 FT /product="Gypsy-11_PIT-I_3p" FT /translation="MSQVQISGATLEHAAFPHLTRVEWEALHRLVAVSGDA FT VVASLLSSATPDQQRLAAQEFMERELADANRRVSTPSRPSQNDVVKMETST FT YSGAGENRLPLNRWFREIDIAIASRRIEASSAKMNFLLSRLTGKAKEWALG FT KLVVDPEAFPTLETLQSDLRLAFEPPQDESRVRAEFFALRQGQMSMRDYVQ FT KTRHLASCIVTKPIDMASQVHVFVFGMREGMTRYCLTRAEPSSLEEAFALA FT IREDYMVAASYAAAIPAEARESTPEPMEIDAINASSNRRRGSYRGSAGRSN FT RPLICFRCGKRVIARRSAARQLPSSLTSTRNTPRSLIQKTTRTSRCGAPYW FT L" FT CDS join(1426..2526,2530..5346) FT /product="Gypsy-11_PIT-I_1p" FT /translation="MNYAFDCILGIPWLARYQPEIDWLAQSVKRRRGFDVS FT EVFTHLLVAPRDWPHVTVVDKTATTQAVHRASDGPLCMACATLLNEEPSRF FT REVDDEVVEQRLPQYKTVVEQGIPQHEMMVEQGLPQHETVVEQGLPHNETA FT VEQRFPPNDSAVEHIGLPSNDAAVEQGLPRVPGPVEYGLPRLEEGDASSSS FT SASDSSVSSRKSKKKSKRRRLKPRRDYTTSDSPPMESVSALEYVEGGPNRS FT RSAIASPPREAAAITRLPGLSWKNFLRDLKAGDVEQVCLVTEAVSVDEAAN FT AVATDSVRSRPLGAEPKSAREERFQTQSWEALRESANPVYDTACEYADVFP FT DEIPAELPADRGVQHKIDLAPGTKCVTRQWPLPRDQVKAIDDFFEGRRKAG FT HVRESTSPHSSPTFCVKKATGGWRIIHAFSKLNDATIPAQTSIPRKDMVLD FT SMAGSVIYSAIDLTDGFYQILMRTSDVPLTAVSTPSGMLWEWLVMPQGLKN FT APATFNRMVSHVLRPLRDFAPSYFDDIFVHSRAEGNLSAVDVHLKHLRQVF FT QVMRENKLYANLKKCVFCAPEIPVLGCYVSKNGVRADPEKVSSICAWPTPT FT SPTELRQWLGMANYLHKYTKNYAGLIQPLSSLLKKDVIWEWKSDHQAAFDS FT VKKSLASAPILKLADDSKPFHVVCDASDFAIGCALMQFDDDEHERAISYQS FT RQLKPAEKNYPVHDKELLAMRYALIKFRVYLLGEQSFAVYTDHASLRTAMK FT SPHLSQRMARWLSFFSEYSFVVHYKPGKNNILADALSRRPDYDPREALGHQ FT LADEDNNECAVCVSSGINLTLTTPTLPLGDEIATAYADDPIYGAIMKHLRA FT PSSDTLSALSKTTRNQIDRYRLDGNLLKYTIDRFDGPRVVVPNDADLRARI FT IHEYHDAPTGGHHGREKTYAALSRDFYWPHMYKRVRKWVRTCETCQRVKPS FT STSQAPLRPLPVATEAWRSISMDFIFGLPPDTAGRTGVLVFVDRFSKMVHL FT VPVAASITAEESAPHFVDVIFRHHGLPESIVSDRDPRFTSAFWSRLFELLG FT TKLLMSTAAHPETDGQTERVNRVLEDVLRSYATSYTSWSSFLPLAEFALNN FT AEHSSTGMTPFFVNNARHPRVPALLAVGHPTDAGGFTLGGGEPPSVDMDAE FT AALSSRHNVSVSWSSPVREPVSQHAPVASPVSTSLPAHSTSGLSSGVASAN FT ALTRSPSKQSIEPPRHTASPITRWTSQNLIDPGRKIREQEVTTANYTPKPS FT VLPADRSAVAELSCKGNPSQGSSATHCRTQWTSKRNKLISTVERT" FT CDS 5250..6272 FT /product="Gypsy-11_PIT-I_4p" FT /translation="MQRQSIARFVRDALQNAVDKQKEQADKHGRKNVNVFK FT IGDGVLLSTEGIRASAVTNLGANKLAPRFIGPFRLTKAVGDAYTLDIPSSL FT RLHPTFYVGRLKRYFPATIPNSIQQTEHASGDQPDEPDAPESRQPLAPALA FT DDLPAGQSQAHASPIPVGEITAPDSTDEAPTRSAQPARHDLPPAQPQPERP FT TRGSKLPPPRPERTGRTPYHREGPPPIIDSVGDARWIVERIVDHEDPHSST FT AQRNVRSRAPRAVPTARRYLVRWLGYSPEHDTWKSRANLLRDVPDVVHEYE FT TMLLEKKNSASHPAETVNEIENGHENDPHEEATTTPRSDACNVGVSRRD" XX SQ Sequence 6990 BP; 1458 A; 2166 C; 1969 G; 1397 T; 0 other; cctggtagca cttagtagtc cttccaacga ccaagtctac gatgagccaa gtccagatct 60 ccggggcgac cctggagcat gctgcattcc cccatctcac tcgcgtggag tgggaagcgc 120 ttcaccgcct cgtggcggtg tccggagacg ctgttgtcgc atcgctgctg agctcagcga 180 cgcccgacca gcaacgtctt gcagcacaag agttcatgga acgcgagctc gccgatgcga 240 atcggcgggt gtcaactccc tcgcgtccat cccagaatga cgtcgtcaag atggagacgt 300 ctacgtattc tggcgccggt gaaaaccggc ttccgctaaa tcggtggttc cgcgagatcg 360 acatcgctat cgcctcgcga cgcatcgagg cgtcatcggc caagatgaac ttcctcctct 420 cccggttaac cgggaaggcc aaagaatggg ccctcgggaa actggttgtc gaccccgagg 480 ctttcccgac tctggaaact ctccagagcg acttgcgcct cgcgttcgag cccccgcaag 540 atgagtctcg cgttcgcgca gagttcttcg ctctgcggca agggcagatg tccatgcgtg 600 attacgtcca gaagacgcga catctggcgt catgcatcgt gaccaagcca atcgacatgg 660 cctcgcaagt ccacgtattt gtgttcggca tgcgcgaggg tatgacccgc tactgcctca 720 ccagagctga gccctcctct ctcgaggagg cgtttgcact cgcgattcgc gaggattaca 780 tggtcgctgc atcgtacgcc gcagccatac ctgcggaagc ccgagagtct acccccgagc 840 ccatggagat cgacgccatc aacgcgtcga gcaatcgacg tcgcgggtcc taccgcggca 900 gcgctgggcg aagcaatcgc cccctcattt gcttccgctg tgggaagagg gtcatcgcgc 960 ggcggagtgc cgcgcgccag ctcccgtcgt ctctcacgtc gacgcggaac actcctcggt 1020 cgctcattca gaaaacgacc aggaccagta ggtgcggggc gccttactgg ctttagcgaa 1080 ggaccgggcc ctccggtggc agcccaacct tcgagccctc ccgtgctcca agcacacacc 1140 aatgccacca ctacgccggg cgactcgaga ctgatcattg tcagcctcca cgtcaccggt 1200 gcccggcgac cactgcgcgc gctcctttac tcaggagcga ccaacaactt ctttcgcgca 1260 tcgtgtttgt cggtactacc caagagcgtc cgcgtccgga atggtccggg cgagatccaa 1320 gtcaaactcg cagatggtaa ggctcgccgc gttgcgcggc gtgacgtgtc tttgtcgtac 1380 acgttcgacg gcttccgtag caaggacgac ttcttggtga tcgagatgaa ctacgcgttt 1440 gactgcatcc tgggcatccc ttggcttgcg cgatatcagc cagagattga ctggctggcc 1500 caatcagtca agcgtcgacg tggattcgac gtgagcgagg tcttcacaca cctcttggtg 1560 gcgccaagag actggcccca cgtcacagtc gtagacaaaa cagcaacgac acaagcagtg 1620 cacagagcga gcgatggccc tctctgcatg gcttgtgcta cattgttgaa cgaagagccc 1680 tcgcggtttc gcgaggtaga tgatgaggtg gttgagcagc ggctcccaca gtacaagacg 1740 gtggtcgagc aggggatccc acaacacgag atgatggtcg agcaggggct cccacaacac 1800 gagacagtgg tcgagcaggg gcttccacac aacgagacgg cggtagagca gaggttcccg 1860 ccgaacgatt cggcggtcga gcacattggg ctcccgtcaa acgatgccgc ggtagagcag 1920 gggctcccgc gtgttcccgg cccggtcgag tacggtctcc cgcgcctaga ggagggtgat 1980 gcatcgtcga gtagcagtgc gtcagactcg agcgtaagct cgaggaagtc gaagaagaag 2040 tcgaagcgac gacgccttaa acctcgtcga gactacacga ccagcgatag cccgccgatg 2100 gaatcggtca gcgcgctgga gtacgtggaa ggaggcccga atcggtcgcg cagcgcaatc 2160 gcgagcccgc cgcgcgaagc ggcggcgatc acacgccttc caggcttgtc ctggaagaac 2220 tttcttcggg acctcaaggc tggagacgtc gagcaagtat gcttggtcac cgaggcagtc 2280 tcggtggatg aggcagcaaa tgcggtcgca acggacagtg tacgctcacg tccgctaggt 2340 gctgaaccta agtctgctcg agaggaacga ttccaaacgc agtcttggga ggccttgcgg 2400 gagtcagcga atcccgtata cgacaccgcc tgcgagtacg ccgacgtctt cccggatgag 2460 atccccgccg agctaccggc ggatcgtgga gttcagcata agatcgacct cgcgccaggt 2520 acgaagtagt gcgttaccag acaatggcca cttccgcgtg atcaagtgaa agcgatcgat 2580 gacttcttcg agggccgccg aaaggcgggt cacgtgcgtg agagtacctc tccccattcc 2640 agtccaacgt tctgtgtgaa gaaagccaca gggggatggc gtatcattca cgcattcagc 2700 aagttgaatg atgccaccat ccccgcgcag acttcgatcc ctcggaagga tatggtactg 2760 gactccatgg ctggcagcgt catctacagc gccatcgacc tgaccgatgg attctatcag 2820 atcctgatga gaacatctga tgtacctctc accgccgtaa gtacaccgag cgggatgctc 2880 tgggagtggc tcgtgatgcc acagggcctc aagaacgcgc ctgccacctt caatcgcatg 2940 gtctcccatg tgcttcgccc gcttcgagac ttcgcgccga gttacttcga cgacatcttc 3000 gtgcacagcc gcgctgaggg caacctcagt gccgtggacg tacatctgaa acacctgaga 3060 caagtcttcc aggtgatgcg agagaacaag ctctacgcaa acctgaagaa atgtgtcttc 3120 tgcgcaccgg agattccggt gttgggatgc tacgtgagca agaacggtgt acgcgcggat 3180 cctgagaagg tatcgtctat ctgtgcttgg ccaacgccga caagccccac tgagttgcgt 3240 cagtggcttg gtatggccaa ttacttgcac aagtacacga agaattacgc tgggttgatc 3300 cagccgctgt cctcgctgct gaagaaggac gtgatctggg agtggaaatc ggaccaccaa 3360 gctgcattcg actcggtgaa gaagagcttg gcgtctgcgc cgatactgaa gcttgctgat 3420 gactcaaagc cattccacgt cgtctgcgac gcgagcgatt ttgccatcgg ctgtgcgctg 3480 atgcagttcg acgatgacga acacgaacgc gctatcagct atcagtcgcg ccaactgaag 3540 ccagccgaga agaattaccc agtccacgac aaggagctcc tggcaatgcg gtacgctctg 3600 atcaaattca gagtgtactt gctcggtgaa cagtcatttg cggtttacac tgatcacgca 3660 tcgctgcgga cagcgatgaa gagccctcac ttgtcgcaac ggatggcccg ttggctgtca 3720 ttcttctccg agtacagctt cgttgttcac tacaagccgg gaaagaataa cattctcgcc 3780 gacgcgctgt ctcggcgtcc ggactacgat ccccgtgagg cgctaggaca tcagctcgct 3840 gatgaggaca acaacgaatg tgcggtctgc gtgtcgtcag gcatcaactt gacgttgacc 3900 acgcccacgc tcccgctggg cgacgagatt gctacagcgt acgctgatga ccctatatac 3960 ggcgccatca tgaagcacct gcgtgctcct agtagtgaca cgctaagtgc cctgtccaag 4020 accacgcgga atcagatcga tcgatatcga ctggacggta atctgctcaa gtacaccatc 4080 gacaggttcg atggacctcg agtcgtcgtc ccaaacgacg ctgatctacg tgcgcgcata 4140 atccacgagt atcatgacgc cccgactgga ggacatcacg gtcgcgagaa gacgtacgcg 4200 gctctgtcga gagacttcta ttggccgcac atgtacaaga gggtacgcaa gtgggtccgc 4260 acatgtgaaa cttgccagcg agtcaaaccg tcttcgacgt ctcaggcccc attgcgccct 4320 cttccggtcg ccacggaagc ctggcgctcc atttcgatgg acttcatctt cggtcttccg 4380 cccgatacag ccggacgcac gggtgtactt gtgttcgtcg atcgtttcag caaaatggtc 4440 catctcgttc cggtggcggc ctcaatcacc gcggaagagt ccgcgcccca cttcgtcgac 4500 gtgatttttc gtcaccacgg cctgccggag tctatcgtgt ccgaccgcga cccgcggttt 4560 acatccgcgt tctggtcacg cctcttcgag ctcttgggaa ccaaattgct gatgtcaact 4620 gcggcacatc cggagacgga tggacaaaca gaacgcgtca accgcgtcct tgaagacgtt 4680 ctccgcagct atgcaacttc gtacacgagc tggagctcgt tcctaccgct agccgagttc 4740 gcactcaaca acgccgagca ctcctcgacg ggtatgacgc cgttcttcgt gaacaacgca 4800 cgccacccac gtgttccggc acttctcgcc gtgggtcacc ccacggatgc tggcggcttc 4860 acccttggtg ggggagaacc tccttcggtc gacatggatg ctgaagctgc gctcagctct 4920 aggcacaacg tgtccgtgtc gtggtcatca ccggtacgtg aaccggtgtc tcagcacgca 4980 ccggtagcct caccggtgtc aacaagcctg ccggcgcact cgacttcagg gttatcttcg 5040 ggtgtagcca gtgcgaacgc cctgactcgt tctccgtcca agcagtccat cgagcctcct 5100 cggcatactg catctccgat aacgagatgg acgtcgcaga acttgatcga tccaggccgc 5160 aagattcgtg agcaagaagt taccacggca aactatacac cgaaaccctc ggtgcttcct 5220 gccgatcgct cggcagttgc ggaattgtca tgcaaaggca atccatcgca aggttcgtcc 5280 gcgacgcact gcagaacgca gtggacaagc aaaaggaaca agctgataag cacggtcgaa 5340 agaacgtgaa tgtattcaag ataggagatg gcgttctcct atcgaccgag ggaatccgcg 5400 cttccgccgt gaccaacctc ggcgccaaca aacttgcccc acgcttcatc ggtccttttc 5460 gtttaaccaa ggctgtgggc gacgcctaca ccttggacat cccgtcgtca cttagactcc 5520 acccgacgtt ttacgtcggg cgactcaagc ggtacttccc tgcgacgatt cctaattcga 5580 tccagcagac ggagcatgcg tcgggcgacc agcccgacga gcctgacgcg ccagaaagcc 5640 gtcagcccct ggcgcccgct ctcgcggacg atctccctgc tgggcagagc caagcacatg 5700 cgtctccaat ccccgtaggc gagataacag ctcccgattc gactgacgaa gctccgacgc 5760 gatctgctca gcccgccagg cacgatcttc cgcccgctca gccccaacct gagcgtccaa 5820 cgcgcggttc gaagcttcct ccacctcgcc ctgaacgtac agggcgtacg ccgtatcatc 5880 gtgagggccc accaccgata attgactcgg tgggtgacgc gcgctggatt gtggagcgta 5940 tcgttgacca tgaagatccc cacagctcga ccgctcaacg aaacgtccgt agtcgtgctc 6000 ctcgcgcggt tccgaccgcg cgccgctact tggtacgttg gctcggttat tccccagaac 6060 atgatacgtg gaagtcccgc gccaaccttc tccgcgacgt tccggacgtg gtccacgagt 6120 atgagaccat gctacttgag aagaagaatt ccgcgagtca ccccgcggag accgtgaacg 6180 agatcgagaa cggccacgag aacgacccgc acgaggaggc gacaacgacg ccgcgctccg 6240 acgcgtgcaa cgtcggcgtg agccgccgcg attagccgcc tgatccatac tggacagggt 6300 gtgctcgtac ttcccgatcc atcccgactc ctctccgctg agtggccgct cagcgagata 6360 ttccctccat tcgcgttgag tcggacgggt tgaagtacca caggactcac atccctctct 6420 cacgtgcacg aagcagagtc gatccatatc ccacgcgttg ttgcagacct tcacgcgtag 6480 ctctccaatc gaatattccg cgaggatctc ctcgcgatac gtcaaccagt cgacaaagct 6540 ttcttcagca cgcgacatcc ggttccatcg ccggatgaag gcacaccagg agcgacgaag 6600 tccctcgcga tcagcgcctt caatgtattt cttccgcgtc gcgcggaagc gacgaaagtg 6660 gttcttcata gtgtcgagcg tatccggatt ctccgctcct gacaagtcgt acatgtccca 6720 gggaaccagg gcgtcgtcca tcacgcgcga ccgcgtgctt ccggcgctga tcctcgtgac 6780 tgtcggctcc gccggtgtct cggctgtctg ggttaccgcc gccgttagtg tgtcgatgct 6840 tgctgctgtc accagcgtcg cgctggtgct aacgtccgct gactgcgtcg tgttgtcctc 6900 ggccatcttc gctccgttgg gttttcgagt tttcttcaat tgtgttccgt gcgcttatgt 6960 tgcgtaagcg caacttagag aggagggtga 6990 // ID SAT1_LM repbase; DNA; PLN; 173 BP. XX AC . XX DT 13-MAY-2005 (Rel. 10.05, Created) DT 03-JUN-2005 (Rel. 10.05, Last updated, Version 1) XX DE Larix (larch) satellite repeat unit - a consensus. XX KW SAT; Satellite; Simple Repeat; satellite DNA; tandem repeat; KW SAT1_LM. XX OS Larix OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae. XX RN [1] RA Hizume M., Shibata F., Matsumoto A., Maruyama Y., Hayashi E., RA Kondo T., Kondo K., Zhang S. and Hong D.; RT "Tandem repeat DNA localizing on the proximal DAPI bands of RT chromosomes in Larix, Pinaceae."; RL Genome 45(4), 777-783 (2002). XX RN [2] RP 1-173 RA Gentles A. and Jurka J.; RT "Larix satellite DNA consensus."; RL Direct Submission to Repbase Update (13-MAY-2005). XX DR [2] (Consensus) XX SQ Sequence 173 BP; 57 A; 27 C; 30 G; 59 T; 0 other; agcttttctt atttccggac gcatgcgcaa actatagaaa gtcgttatga cgtagaatgt 60 gcatactttg ttgattccat ttatgaaata aaacacattt tctaaaaact cgtgtttttt 120 acgaaatcat gtaaaccttc tagaagctgt gattttaaaa aacggtggaa gta 173 // ID Copia2-I_VC repbase; DNA; PLN; 5455 BP. XX AC . XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 14-MAR-2010 (Rel. 15.04, Last updated, Version 2) XX DE LTR retrotransposon from volvox: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia2-VC; KW Copia2-LTR_VC; Copia2-I_VC. XX NM Copia2-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5455 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 107-107 (2008). XX RN [2] RP 1-5455 RA Jurka J.; RT "Consensus."; RL Direct Submission to Repbase Update (14-MAR-2010). XX DR [2] (Consensus) XX CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 73..843 FT /product="Copia2-I_VC_1p" FT /translation="MSTINDNAPSTETVATVPGGAGGGLGAIGSSPPAGAA FT KTGAAVLETVVMNALEKVSEKRRRDDRAALEQADELRADXMANEQKVPRDV FT IGHRLQAFAGFHLGLQLIRSYLDAGCYEKAAEWTDRLQLRAEIGMEVTHQL FT ASEPRIGLTAADHCFNNIIGTRIPKGEKAEALVRKQKDWALRTASASTPGS FT HGGSHGGSHSRGAGGSGGGGSGGGSRGSNHRGGGQRGGHEYGGGRDAERFD FT RSDRNGNSRKEGRSGK" FT CDS 4711..5334 FT /product="Copia2-I_VC_3p" FT /translation="MTVTAVVVMFAGFFRFDDAAEISVHEDLLVITATGMD FT VFIPRSKTDQQRQGHWVPIARVGGAACPVGLTERLLTLGGYKRRPDTPDED FT VGPLLRPVQWNRAGGYLSGPLTGTVAQPIHSLSYPAFCHRLNKTLQAAGIT FT RRITAHSMRIGGNSTAADRGVPADLRKAHGRWRSDAMVQHYTRRDGEAKLS FT VSRSLGLASEQMSLRSAV" FT CDS 1829..4231 FT /product="Copia2-I_VC_2p" FT /translation="MDSFSHDDAIAFLSELGVEALSSPGLAENVQLSVSRN FT ASQFKGQRLLGQPRGPPTAAPEDLPAPKRPAPGPVPARRPNLDPAPVPASL FT ATHRKQPARPAVAPEGVKVEAPGEFWEDKGEFSSPTFDNASGSRSSPVAGP FT PPVPPQMRGRLSGKKGAWKAWVVNALVISWITSGFPLRWVSSPPPQHSGRN FT HASATANAAFVDKAVADLVASGTARVWPSQPRVVCPLGVVQQATKLRLIWD FT GRPVNDYLHVPSFRYEDLKAVPGWLLPGDYLFTLDLKSGYHHLDIDPRFWE FT YLGFCWRGVFYVFTQLPFGLASACWAFTKLMREVMRPWRKRGWRCSGYIDD FT QVHADQNADNLVRRRAEVVAQLETLGFLVNKEKSMLGAVQHRIRYLGMLID FT TKDGVFIVPGNKRDRLLSQINSVLTARRSTARLLASIKGQLLAMSWALGPW FT ARLRTRALGQLIETRQTWETHLSLSDDAREELSFWESSFDRFNGRRHLWVP FT SVVHSLIFCDAAGKSSESLGGWGAWTILNGRLAPARGEWTPDVSAMGSTPQ FT ELQAILNAIRSFDSPAGLSGQSVKVITDNLNAANVVNKGSAKADNSHKVAC FT ELHSXCFEQDIRLQAEWRPRGQNQLADALSKLQDPDDWMLKPSIFRRLHDT FT WGPFDIDLFASHATFQLPVYYSRYFTPTTSGVDAFRFSWGRRCWANPPFHL FT LLRVLQHAEACQSRLCLVAPFWPTRDWWPFITADGVWFKPFVSGVRLLGRA FT ADVFLARTSGAPLPKGASRWSTLALLVDFSASNINRIRVPADPIAPLAQT" XX SQ Sequence 5455 BP; 907 A; 1723 C; 1667 G; 1152 T; 6 other; cttgaagcct taccaattca agttccgatc tacatcgctc gagttcctac ggttcctact 60 tagttcattc aaatgtcaac tattaatgac aatgcgccat cgacwgagac cgtagccacc 120 gttccaggtg gggctggtgg tgggttgggc gccatcgggt cctccccgcc ggccggtgct 180 gctaagacgg gcgctgctgt tttagaaaca gtagtgatga atgccctaga gaaggtctct 240 gagaagcgcc gccgggacga ccgggccgct ttggagcagg cagatgagct kcgcgcggat 300 kttatggcta acgagcagaa ggtaccgaga gatgtaatcg gtcaccgcct gcaagccttc 360 gcaggctttc atctcggcct tcagctcatt cgcagctacc ttgatgccgg ctgctacgag 420 aaggccgctg agtggacaga ccggctccag cttcgcgccg agatcggtat ggaggtgacg 480 caccagctag cctcagagcc ccgcataggc ctgacagccg cggatcactg ttttaataac 540 atcatcggca cacggattcc aaaaggcgag aaagcggagg ccctagtgcg taaacagaag 600 gactgggccc tgcggacggc gagcgcctcc acgcctggca gtcatggcgg cagtcatggt 660 ggcagccatt ctcgcggcgc cggaggctcc ggcggcggag gcagcggtgg cggatcgcgc 720 ggcagcaacc acaggggtgg cggccagcgt ggaggtcatg agtacggcgg aggtcgcgat 780 gcagagcgct ttgatcgcag cgatcgcaat ggcaatagcc gcaaggaagg ccgcagcggc 840 aagtagtggt tttcaggctc tggcgcagta gagtggggcc cgtgtgcctg tccttttttc 900 ttggcccgtg tgccgcttct cctcttcaat gaccaccgcc ggtcagtgca gcgtgcgcag 960 gatttttttc ttcggttacg atgaggttgc cagcgagcat cgatttgggc acccgcgcgt 1020 gcgattgagg cgcccgtgtg cgcgatagtc ggcgcccgtg tgcgcagttg ttggcgcccg 1080 tgtgcgcagt ttttggcccg cgagttttgg cgcccgcgtg cgcagttgtt ggcgcccgcg 1140 tgcgcagttg ttggcgcccg tgtgcgcagt tgttggcgcc cgcgtgtgca gttgttggcg 1200 cccgtgtgcg cagttttggg cgcccgcgtg caagttggcc cgcgtgtgca gttgttggcg 1260 cccgtggcag gctgtgtgcg cagttgggcg cagttgttgg cgcccgcgtg cgcagttgtt 1320 ggcgcccgtg tgcgcagttc tggcgttggc gcccgtgtgc gcaggttggg ccccgcggca 1380 ttgttggcgc ccgtgtgcgc agttgttggc gcgggccgtg tgcacagttg ttggcgcccg 1440 cgtgcgcagt tgttggcgcc cgtgtgcgca gttgttggcg cccgcggtgc agttgtaagc 1500 ttcgttgacg acctttttta ctcgcggtgt tttgccttcc cgcttttttc ctttctatcg 1560 ckttcgcatt ttgaggttgt gaacagaccg tcgcacgggt tcactttgtg gcagcgtttg 1620 ccgttttctt cccttttcgg ataattcgcg tcaggccaag tggccactca agtcgccttg 1680 gcagccggcc ggctgggggg acccgttttt tgcctgtctt actctttaag cgttgctcca 1740 cttctcgcct cgcccgtgtc tccaacagtc tgtccggtgc acgcttgcag gccttcatag 1800 ccgccagtaa tttccagcct gaggaaccat ggattcgttc tcgcacgacg atgctattgc 1860 cttcctgtcc gagctagggg tagaggccct ctcgagtccg ggccttgcgg aaaacgtcca 1920 gctgtccgtc agtcgcaacg ccagccaatt caaagggcag cgtcttttag gtcagccgcg 1980 cggcccacct accgcagccc ccgaagactt gccagccccc aaacggcccg caccgggccc 2040 cgtccctgcc cgtcggccaa acctggaccc cgcaccagtt ccggcaagtc tggccacgca 2100 tcggaaacaa ccagcccgcc ccgcggtggc gccagaaggt gtgaaggttg aggccccggg 2160 tgaattctgg gaggataaag gggagttttc tagtcctact ttcgacaacg cctcgggatc 2220 tcggtcgtct ccagtagcgg gtccgcctcc cgtgccgccc cagatgaggg gacgcctctc 2280 gggcaagaaa ggcgcttgga aggcttgggt tgtgaacgcg ctggtcatct cgtggatcac 2340 gtcgggtttc ccactccgtt gggtctccag ccctcccccc cagcactccg gccgcaatca 2400 cgcttcggca accgccaacg ccgcgttcgt ggacaaagcc gtagcagatc tggtggcgtc 2460 gggcacggcc cgtgtwtggc cgtcgcagcc ccgcgtggtt tgcccgttgg gggtcgtgca 2520 gcaggcaact aagctccggc ttatttggga cggcaggccg gtaaacgatt acttgcacgt 2580 cccctccttc cgctacgaag acttgaaggc ggttcctggt tggctactcc caggcgatta 2640 tctttttact ttggacctta aaagcggcta tcatcacctc gatatcgatc ccaggttctg 2700 ggaatatctc ggcttctgct ggagaggggt cttctatgtc ttcacacaac tgcctttcgg 2760 cctcgcttcc gcttgctggg cgttcacgaa gctcatgcga gaggtcatgc gcccctggcg 2820 caaacgcggc tggcgatgct cgggctacat agacgatcag gttcacgcag accagaacgc 2880 cgacaacttg gtccggcgca gggccgaagt ggttgctcag ttggagacgc tcggtttcct 2940 ggtcaataaa gagaaatcta tgctgggggc cgtgcagcat cgcattcgtt acttgggcat 3000 gcttatcgat accaaggacg gcgttttcat cgtgccaggc aacaagcggg accgcctctt 3060 atctcagatc aacagtgtgc tcacggcgcg gcgctcgacc gcccgcctat tggcatccat 3120 taaaggccaa ctcctggcca tgtcttgggc cctcggacct tgggcccggc tgcgcacccg 3180 agctctcggt caacttattg aaactcggca gacctgggaa acccatctct ccctctctga 3240 cgacgcgcgg gaggagctgt ctttctggga gtcgtccttt gatcggttta acggccgacg 3300 gcacctgtgg gttccgtccg tggtgcattc cctcattttt tgcgacgccg caggcaaatc 3360 ctccgagtcc ctcggaggtt ggggggcctg gaccatcctc aatggccggt tagcgccagc 3420 gcgtggcgag tggacgcccg acgtcagtgc tatgggatct accccgcagg aactccaggc 3480 cattctgaac gcgattcgat ctttcgatag cccagccggt ctatctggtc agtcggttaa 3540 ggtcatcacc gacaacctta atgcagcgaa tgtcgtcaac aagggctccg ctaaagcgga 3600 caactcccac aaggtcgcct gcgagctgca cagctwttgt ttcgagcagg atatccgctt 3660 gcaagcggag tggcgacccc gcggccagaa ccagctcgcc gatgcgcttt cgaaactgca 3720 agaccctgac gactggatgc tgaagcccag catattccgc aggcttcacg acacctgggg 3780 ccccttcgac atcgacctat ttgcgtccca cgcgactttc cagctccccg tgtactattc 3840 ccgctatttc accccaacga cgtccggagt cgacgcgttc aggttctcat gggggcgcag 3900 gtgctgggcg aacccgccct ttcacctcct cctcagggta ctgcagcacg ccgaggcctg 3960 ccagtcccgg ctttgccttg tcgcgccttt ctggcctact cgcgactggt ggccttttat 4020 cacagccgac ggggtctggt tcaaaccttt cgtgagtgga gttcgcttgc tcggccgggc 4080 cgcggatgtc ttcctggccc gcacttcggg ggcccccctg cccaaaggcg cttcccgctg 4140 gtccaccttg gcccttctgg tcgacttctc ggcctctaac atcaaccgta tccgtgtccc 4200 cgctgatccg atcgcgcccc tcgcacagac ttagatgccc gggctgaggc tcttttggtc 4260 gctcttggcg cggaggcgga cgcggagctc tccaccttgg cgactcagtt tgcccaagtg 4320 gccggtcaga cactcgcccc gcggacgtcc aatgattacg cgcggtcttg ggaacccttc 4380 cgcgagtggt gggtggccag gcgactgccc ggaagcatct atgacacccc gggtgaggcg 4440 gtggcgctct atctgctctc cctgctgaac tcgtccaagg aagataaggt ggggcctgga 4500 cgggttcgta cagcgagtgc agcaatcagc tcctacttcc gcctagccag cagagcgccc 4560 cctacagagc accctgcctg cagcatcgtc cgcgacctcg ccgaaaagca actccaaggc 4620 cgtaagctgg aacgcgacgc cctggagccg gcggacgtca cggcgctggc ccggctggtc 4680 ggtgggccgg agccgcccct tgaccagctg atgaccgtta cagccgtcgt ggtcatgttc 4740 gcggggttct ttcggttcga cgatgctgcg gagatcagcg ttcacgagga ccttctggtt 4800 atcacggcaa ctgggatgga tgttttcatc cctcgatcca agaccgatca gcagagacag 4860 ggtcactggg ttcccatcgc ccgtgtcggc ggtgccgctt gccccgtggg cctgacggag 4920 cgcctcctca ccctaggagg gtacaaacgc cgcccagaca cgccggacga ggacgtcggg 4980 ccccttttgc gaccggtcca gtggaacagg gccggggggt acttgtcagg ccccctgaca 5040 ggcacggtgg cccagccgat ccactccctg tcgtaccctg ccttctgcca ccggctcaac 5100 aagaccctgc aggcggcggg gatcacccgc cgcatcactg cgcattccat gcgcatagga 5160 ggaaatagca ctgccgccga ccgcggtgtg cctgcggacc tgcgcaaagc gcacggccgg 5220 tggcgcagcg acgccatggt gcagcactac acgcggcgcg acggggaggc gaaactctcc 5280 gtctcccgca gcctgggcct cgccagtgag caaatgtctc ttcggtctgc tgtgtaaggc 5340 ccttggcagc ggtgcaattc tcgccaacaa atcgtccaaa ccgcaccgtt cagcaccatc 5400 gggtcagcca atcctccgcc accagaacca gttaagggag acagtaacac agaat 5455 // ID PiggyBac-2_PI repbase; DNA; PLN; 4381 BP. XX AC . XX DT 18-MAY-2011 (Rel. 16.05, Created) DT 18-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; piggyBac-2_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 4381 BP; 1131 A; 1011 C; 1135 G; 1104 T; 0 other; ccccttcaac ccggtagctg tataagctgc gtttgaaatc agctgttacg ctgtatatac 60 agcgtagtgg ttttatacct aaataaacta tacttgtttc tgacagattc acaaggtata 120 caaaagcgaa gattaaaatt tgagagccgg aaaatgtatc ttcctacaga tgagtctaaa 180 gagagagaga aaggccgctt ctaatttctc gatttttttt agatattata agtgccaggt 240 ttggcacagt ctttcgaagc agtatacttt ttgggaggta aatttcgcgc ccttttcgca 300 agcttgagcg ccagtcaaag attttctgcg gtggacaaca agcggttgag aactcgtgat 360 ggtggggacc cgcgaaacat ctcgagggag ttgttctggc ggagcaactc cggtacctgt 420 gcccgtgcgg gggcctgaca gcttccgcgt actctgggct ggccttaagt cggctgggtg 480 gaccgcgaag ccaccatcaa gccgaagcct aaatcatttc tggaagtaca tcaagccagg 540 cggtgatccc agtggaaaag agggagtgga ctactttctt ggagagcaag ctctattact 600 gtactctcga gaaggtttgc catactttga gttgttttgg ttagtcttta ttgacgttgc 660 tagttgtatt acatttgtgt atagtggtga agagaaatca cgaagctcga ctccagcaag 720 agcgacaaat cgcagaggcg gataaaggtg tttctccttc tgcggcttct tctgcgtcag 780 ccgctgttcc tgttgctaca gctcctgtcg atgctgctgc tgaccagcaa cttggaacgc 840 tacctgaaca cccagcacca ggtgatgtgg tcgctgagag tgcgatatcc gcacctgtgc 900 caactactcc aggtaatgtt gcctcgcgct ttgtacattt gatatgctgt atctaatgat 960 gtataagctc tttttgctgt atcagccgtc atggctgata cagctgtatc agccgtcatg 1020 gcaagtgcag tcagcgactc ccggccggcg caacctcccc caaggcgtgt agctttgtca 1080 actactccag gtgatgttgc atcgcgcttt gtatatttga aatgctgtat ctaatgatgt 1140 ataagctctt tttgctgtat cagccgtcat ggcaagtgca gttagcgact cccggccggc 1200 tcaacctccc ccaaggcgtg aaacttcgtc agcaccttcg acttccgtgt cccgtgcgcc 1260 aggtgaggaa caattcagtc gattctgcgc tacgatgcac tgctaactcg ttattcaatg 1320 ctgactgtgt gctaccgtta gccaatgcta gtagcaaacc aagcggctgt cgcagcaatg 1380 atagcgactt gcagcaaccg agacgacacc atagtcctct tcctgctcgt ggagaagatg 1440 aagaatcgaa agaagagagt cgtactggcg atttgggtag gattactttc ttgagttgga 1500 tatacatcgt acatcataca tcgtatgcct aacacgtaca ttatgctgta ttatttggtg 1560 tattaggtac ccacgacgtc gttgacatgc taggtgacgg tgacgacgac ttgaacgcac 1620 ctgaaggcag tgatgatacc tactgtgtgc tagactcggg gaccgaatca gaggagatag 1680 acctggacga tttggatgtc agtgacgctg actcgtcagg atcagatacg atcgatgaag 1740 aggacgatga catgtatgca aaggaagaac gccattttgc agacagtttt ctcaactcaa 1800 tcggtggcca cgacagcgtt ctggctggtg atatcatcgg acctgcactg aaagatctcg 1860 gtactactgg atggcatgat cccgagacgc ccaatgtcac gcaatatctg caaacaccgt 1920 acactcctgt tccatctagc gacgagtatc cagatctgat gggtgaacgc ggtggaccga 1980 ctgaagaggc tttgaagcgt ggagcgtcgc ctatcgcact attcttcatg ttcatcccag 2040 tggcgctgtg gcagcatata gcagagtgca gcaatcttta catgcatgag cagctagatg 2100 cccgtgtgga tgcctatttt gagagaaagg aacagcaagc acagaaggcg cgacgagctg 2160 gacgcgcagt acaacaagaa aagaacaaga caagacgaga tgtacgccaa gagttccatt 2220 cggtgaagcc gataatgccg cacgagctgt gcgtctacat cggcctgttg atagctcgaa 2280 caatcatgcc aaatcgcgaa aaactagcga accactggag gctgtcagag caaggggcac 2340 ttccaagagg cacatttggg aaatttctct cacgagatcg attcatgcaa ctcactcaaa 2400 atctccactt cacgagcaac caagacccac gtgcaaaaac cgatcgcgta tggaaaattc 2460 gctctgtagt gaacgtgttg cagcagacgt ttgtgcagta cttcaatcct ccagcagagc 2520 tttcgtttga tgaagccatg ctaccgaata gaagctcgtt caatcggaca agagtgtaca 2580 tgaaagataa accccacaaa tggggtacaa agcttttcat gctctgttgt gctgtgtccg 2640 cttattgtat tcggtaagaa tgctgtcttc gttctgctgt atgcgtttac ttatgatctg 2700 tatgctgtgt gacaatgtac agcttcgagg tgtactgcgg caagaagcag cacattgctg 2760 agtcaggtgc tgtggacatg aagtccggcc ctgctgccgt tgttcgtaac ctgaaagctg 2820 tgtttggaga taagcctcca gagaaagcga tgcgacttgt cgttgtcgat cggttctaca 2880 cgtctattgt gctagccgta cagctactgc tcatggggtt ttacacaatt ggtacaatca 2940 tgacaaacag aagaggcttc tgcaaggcgg tggtgtctag caagaagact aggccgaagg 3000 gtatcccgag aggagcgctc acgtttgctc ggtctaagca tgtaaaaaag atgacttcga 3060 tatgctggtg ggacagcaaa cctgtgcatt tcctatcggt tggtggaaac ctggagctag 3120 accgtgtggt tagaagggag aagaccggag aacagaatga agtggcgtgc cccaaggtca 3180 tcaaggacta ccataagttt atgggcggag ttgatgtgca cgatcaactc cgcctgcaac 3240 ggtactccgt tcagcgctcg atcacattcc ggaaatacta taagtcactg ttcctggggc 3300 tggttgatct cgcgattaca aacgggtaca tcgtgcacaa agcatattgc aagcagaggc 3360 agattcgagc gatgacacac gcgcaataca tgtgcaagct gcacaagcaa ctgatcacac 3420 tttccgtgga ggatatgtac gaagagaaca ctttcagcac aggtaagcac tatttggttg 3480 acatgctgta tatactgttt acattaacgt gtatatacag atggctacac ttcagtcgag 3540 gagcgcgagt ccgtcgatgc cagcggacac gtgccgaaac taaatgaaga gtggcgagac 3600 cattccggac agaggaagcg agtgcagaag aactgcaagg tatgcacaat tttgaccgaa 3660 gatggcaaga ggggggccac cacaacgtac tattgcgatg ggtgtgactt tccggggcca 3720 atatacttgt gcacgaagcc gaagtggcca atgaagggta caatcaagag ctgttgggac 3780 gtgtggcaca atgaatacaa gaacggcgct gaaattccag cgcacaagaa gggtaagatc 3840 cgagtgcgcg cggcaaagac tacaggatct cctggcaagt ctcctgccaa gcgccgccgt 3900 gccgctgctg cctccccagg ataaattctg tgtgatcaat gaagtagctt cactatttgc 3960 gtctctcttg atgttgcgac tgccatcccg tctttatcca cgttttggag gtgtgtggat 4020 gcacttgttt gatgacaagg agtatgttag aaagtttgta tgcacggcag tctcgacatc 4080 agttgattgc aggaaaatgg cactgcattt cagtatgcca gtgcagacgc cctgtttgtg 4140 acacgttttt cacattatta gagatttttt ctgctaccca agtggcacac accacactac 4200 aagctgtata tatacagcgc aatcccccca tgatatacag cttaatcagt gctcgagatg 4260 acttgatcat tttttacccg cctatcttct aatcctttcc cgcgtttgta tacaatttcc 4320 tatatgttaa tgcgatgtat atacagcgtt agggtgtgga aaatcagccg ggttgaaggg 4380 g 4381 // ID Gypsy-16_PIT-I repbase; DNA; PLN; 9755 BP. XX AC AATU01002293; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-16_PIT_; KW Gypsy-16_PIT-LTR; Gypsy-16_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-9755 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002293; Positions 37002 27248. XX CC Positions [7574-7954] - Integrase core CC 'GACC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 3474..4832 FT /product="Gypsy-16_PIT-I_3p" FT /translation="MWIPDGDLPRGDGFVRLESKKYQDWQVLAYEGCRDRE FT LFQRECEIYEQWLATQPSAVDRPYYPEPGGVLAQPLEDSLVDSSDRPTCAE FT RWALILEERERVEACLASGVTAGDLADGQPSAEPLDTYTTAHGGGNNANEA FT SVVRTHELLRPVNVVHTPTSVSVQSGVTTEATSHGTGLNGVTRFDEAVPAL FT CVAKSANEPPVVDPEDTGIAQKVLSTAPSIHCKIGANSEMSRQRQNEHRNK FT NQQPNMSTAHAFNIANDDSADGPEMGNQDGKEMDQVPTVEIKADANVESRE FT ESVTALDGTYISVARVLTTEGNEATEDTRNDFYEHPANNIGLDDYAKELAF FT LPDLTEEINTTIDYTAPNVADPELSTERRERLVATLKNHEHILIASGNALP FT PPAYGAVCDIDTQGHAPIKQRARRVPLRFLGKLYELLRALLRAGLIVFSDS FT PWASPIVM" FT CDS 4811..7954 FT /product="Gypsy-16_PIT-I_2p" FT /translation="MGIADRDVMKKNGLDIRLCIDYKMVNAITAIMEYAMP FT LVDDLLTDLERYLWFCSLDAASGFWAVMMTLRARKVSAFVCALGHFEWLRM FT PFGLKNAPMIYQRMIDNALWGFVQPKGGWFEYSERMRLAEEQAKERRGPST FT EGSFQTKFAADREAPVETDPVLQLVNSPVADMFTNGESDESSLVPVFGRRS FT FVDDICFGGEDFDSCLATLDRLLARFAQCRISISFTKSIFCQSKVDFLSHK FT ISPEGIRADPKKLAAITELSFPTIKKGMQSFLGAVNYYSRFIQDFAVYGAA FT LYQLKDEDFVVEGGLSVARRSFKKLKTSVLHSPILRHFDRSKEVHVMLFAN FT EWALSTTLMQEHEGKLHPVRFLGRVLKKAEMNYHPAEKEVLALLLLLKICY FT VQLAGKTLHVYTRFSTLEWVHKSKSLFGRAVQFAVLLSQWHLKVQRVKEKD FT VAFAQLLQSSITSFVDLEDSLAPVAPPNKGSPTIRMDPALLYARLSRNYSG FT FVMSFDGSAKTEKYGGYGSCSWVLWSLPEWKVVIAANAYLSATTVNEAEYK FT GMINGVKAAIAHGAEDLVIVGDSRLAIQQSLGVIACRKETLLALLNTHKEL FT TAKLRSVKYLHVVREYNAAADSLATEALESKVSRVILAETRKSELASLNGI FT QEMIYEPDEDSVDVSSHGAERQVHVLSGSESSKWKTFENFVVDYSLPKCDY FT GNIAVRTRRQTKAKKRVRFADEHSEDVSKAQKQNEERRETSTEDSFGEDLP FT DHPHKTVPAAFPDAEDVDPVAIQRERRRRIQVAQDEEQKWFSIKKVLQGQA FT QELSYKEARNAWKYADRFVLSEDGVLHYLGLNRRYDHGWQEETKLRLVVPT FT TMIQEVLQNCHDSLEGGHQGVVRTFHRVKSDYYWIGLYADVEKHVKSCPDC FT SSSKSRPQLRGYSPGNVLAERPFQIVSMDFVIPLPKSRRGNTALLLFQCSF FT TGFVIAKAMSDTTALSVAQVFEECVYRRFGTPSLIRHDRDPRFMSEVFQAL FT AEMMQSRSRATLSYRPQANGQQERSVKSVMGSVRVYAEDPLQ" XX SQ Sequence 9755 BP; 2537 A; 2403 C; 2836 G; 1979 T; 0 other; actggtgccg cgacccggga acagattgtg accattgtga actgtttgta tgggccttcc 60 agtttacgag ctaccaagag aagaagacaa gaaaaagaca ggaaacatgg cgaaaggaca 120 accgacggta ccagttacgc ctgcaagtct ggcggggctc gcaacgagag ttcaagcccg 180 gctgcgcgct ttgcagccgc caccgagctt tcagtgagct tcgacgacga agcggacatc 240 ggtcctgacg cccacgatta tgaagattac gaagacaaga cgccggctcc agagccaggc 300 gcagcgacgc cggagacggc cacgctatca tcggggctga gcggggcgac caggtccctt 360 tcgaggagcc tcgccgacga gctcgatgat gttgcgggac cagaaccagc ctacgatgat 420 tatgacgatg ggaccgaggg ttctaaacct tcggtggcaa gtgcaaagca ttcagcgctg 480 ctgaaggcac ctcgcccacc tatcaacggt gatacaccag ccgccaagcg cgttttcgac 540 cgcgtacaag agctgatgca gaatgatgag tggatgcagc tgttcaagcc catccccaag 600 aaaaaagccg actggcctgc gcttgcgcag gaacttcaat acccagtcaa ctcggtttcg 660 actagtcaag ttgccgagga ttcagtttcg ctactgttgt cgctggggtt cgagaacgag 720 acgtacccat cgacgatgtc gctccaggat tggagtccac atgaagccgg agctgctctc 780 cagaaatgga aggagaagct tcggaaggcg tttggcaccg ttggcatcaa taccggaaag 840 cagcctgtga gtcgaccgat gattcaagat gaagatccgt ctaagattcc tctgccgccg 900 acgccccaac gactcgttcg tactcctccg accaagcgtg gagctgagcg tggtgccttt 960 ggcactaccg aagcttaacc gtactttcaa gactcgcaca tggttacgcc acgttcgcag 1020 agccgtatgc aacgtattta cgcaagtaac gagggttcgt tcggtcgccg aggcggtgcg 1080 cgagcttcca aaggtggtgc cggacgtcgt caagtcgaca gcgatggttc gtccagtgac 1140 gatgacattt tggtgcgtac attcgacgag gaagatcctc aactcgagtt gatgcgtcag 1200 atgatgagct agcgacgctg aacgacgtgg acccaacacc gaggattgaa atggcttcgc 1260 accgaccgct ggatcgcatc acgccgttct caggctctcg caacaagagc gagaactgta 1320 tgcagtggct ccgtgggttc gtctatgaaa tgactggaac ccacacagat gccgataaat 1380 ggtgcattcc atttgagcta agtctccggg acggagccat tcattggttc cgtcaacttc 1440 cgaagaagac gaagcacaag tggaagctgc tgagcgacgc gttcatccgc tactactgct 1500 cgcagttcac gcagacggca ctgtagtaat actactccgc caagcgggaa cgtaatgaac 1560 atctgtgcga ctacataaac aggctgaacg gctatgctcg gaccgcccgt ctacacttcg 1620 agaagagtgg tcgcgacgcg aaagaacacg tacagcagtt cctggcaaca tgcgatgatg 1680 acaagctggc ggagagtctc taccacgctc gagtcgccga cattcacgag ctcgaagaga 1740 tcatcgaaga tgttctcaag ggcaaggaga ggatggccaa gcgtgacagt gagtaccgat 1800 actccaagag tcgtgatacg cgacgcgacg atggattcgc ccgcaacaac cggcgtgatg 1860 accgccgccg cgatgacaac cgcagcaaac caagagtgac actcatcgaa gccacggtgg 1920 acgacctact agctgaatta gaaggtcgtg aagctgctca gggaggcacc gagtattcaa 1980 acgaagatcc gaacgcttac gacgatgtcc aagatgagta caacgacttt cagcctgata 2040 atacggacgg tgatttctca ttggacgaaa acgaccgata cctcgccgct gctaacgaaa 2100 atgagcgccg tgcagctgct gaaggcacct acgcacgttc agacaaccgt caaccacgtg 2160 gaaacgtgcc tgatcgcgag aatggcttca atcaagatcg ccgaagtagt gaccgtgggt 2220 tcaatcagga ccaacgcggt cgacgtgact tcaaccgcga caaccgacgc ccacagtacg 2280 gaccatgcgc ggtgtgcggt ggcatgagtc actccgccca ctactgtaac aagtgatgca 2340 agttctgcaa gcagctccac gatgctggac aatgcgaact tttccgcaac ttccaagacc 2400 ttgccaaatt cgtgcgcact aaaggcacga aggaggaact cccgccagag ctcaaggccg 2460 tcgttcaaga acgtcattta aactaggcag cccaccaact acaactgggt tggtccctat 2520 cgggctgcca cagctaaccg agccttcaat ggaagcagag tgtatctttg ctttcatggg 2580 gcagggtgaa tggcctgata attacgtaac aagtgtgaac gcgacggaaa atgaaaaagg 2640 agaggagtag aatcctcggt ggaggtgttg gagagagagt ggagtgtgct gatgctgatg 2700 agggcaccag cgagggttcg ctcggcttgg tttcgagtgc agcgcgagac gagcccaagg 2760 gtcactccaa gatgatgaag ttgaaccctg gcgagagaca ggggtggtgg tcggccaaga 2820 aattcgaccg acggatcaga atgagagctc tggtgcaagg cgctgtgaac gaccagcgaa 2880 cgaggatcct cctcgacaca ggagcgaacg ttagtgtgat cactgacgcc tttgccaaga 2940 agttgcgact ccgagatgta cctgatcacg gacgccgcat tgacattcaa ggaatcaacg 3000 aaggcaaggt gtctacgacg cgacgagcgt gcgtcaagat tacactcgga tgggagatgg 3060 tgtacgagtt tgagatgtgg gtaatggcgc atagtgcagg cgtcgacgta gtactcggga 3120 ccgactttat gatcccagct gggatccggt tggacctgtt ccacggcgcg gcgcaattac 3180 cgcacgaagt ccaaatcccg ctgataaaga ccaagaacat aatcgccagc gaagaatacg 3240 gctcccatgt taacgccggg ccacccgagc ggttggacat tcaagcgcac gagtggcgag 3300 aatatcgact agcgaagcgt caagtcgggc tggaagaaca cgtactgtgg cttcgtcgaa 3360 cgaacaagct aatcccgtca gtgacgaggt ttcgacgtgg acggcctcag agcatatgat 3420 tgaccaacgt gtctgatcga actgtgtacc taccagcaca cgactcgatc gcgatgtgga 3480 ttccagatgg ggatttgcca cgaggtgacg gctttgtgcg tctggagtcc aagaagtacc 3540 aagactggca agtgttggcc tacgaaggtt gtagagaccg cgagctcttt cagcgtgaat 3600 gcgaaatcta cgaacaatgg cttgcaactc agccttcagc agttgatcga ccatactacc 3660 cagaacccgg aggggtgcta gcacaacctc tagaagactc gctagtggat tctagtgatc 3720 gtccgacatg tgcagagcgc tgggcactga tcctggaaga acgtgaacga gtggaagcct 3780 gtctggcgtc tggggtgaca gccggggatt tggccgacgg tcagccttcc gcagaacctt 3840 tggacactta cacgacagcc catggcggag gcaataacgc gaacgaagcc tcggtagtgc 3900 gtacacacga actactgagg ccggtaaacg tggtacatac gccaacgagt gttagtgtcc 3960 agtcaggggt aaccacggaa gcgacaagtc acggcactgg attgaatgga gtcacccgtt 4020 ttgacgaagc tgtcccggcc ttgtgtgtcg ccaaatctgc gaacgagcca ccggtggttg 4080 atccagagga tacaggcatc gcgcagaagg tgttgagtac ggcaccgagt attcattgca 4140 agattggtgc gaattccgaa atgtcaagac agcggcagaa cgagcaccgg aacaaaaatc 4200 aacaacccaa tatgtcgacg gcccacgcat tcaatattgc gaacgacgac tcggcagatg 4260 gcccagagat gggaaaccag gatgggaagg agatggacca agtaccgact gttgaaatca 4320 aagcggatgc caatgttgag tcaagggaag aatccgtaac ggcgttggac ggaacataca 4380 tctcggttgc tcgagtgtta acaaccgagg gaaatgaagc aacggaggat acgagaaatg 4440 atttctacga acacccagct aacaacattg gcttggacga ctacgcgaag gagctggcat 4500 tcctgccgga cctgaccgaa gagatcaaca cgacaattga ctacactgcg cctaatgttg 4560 ctgatcctga gctgtcgact gaacgccgag aacgtctagt cgcgacgcta aagaaccacg 4620 agcacatcct gattgctagt ggtaacgcac tgccgccgcc agcctacgga gcggtatgcg 4680 atatcgacac acaggggcac gccccaatta aacagcgtgc ccggcgcgtg ccgctgcgat 4740 ttctcggcaa gctgtacgag ctgctgcgcg ctttattgcg tgcaggactg atcgtctttt 4800 cagacagtcc atgggcatcg ccgatcgtga tgtgatgaaa aagaacgggc tggacatccg 4860 gctctgcatt gattacaaga tggtaaatgc tatcaccgcg atcatggagt atgcaatgcc 4920 gctagtcgac gacctgttaa cagatctcga gcgctaccta tggttctgct cgctggatgc 4980 agcaagcggc ttctgggcgg tcatgatgac cttgcgagcg cgtaaagtgt cagcgttcgt 5040 ctgcgcacta ggacattttg agtggttacg catgcccttt gggttaaaga acgcgccgat 5100 gatctaccag cgtatgattg acaacgcact ctgggggttt gttcaaccta aaggaggttg 5160 gtttgaatac tcggagagga tgcgtttagc tgaagaacag gccaaggaac gtcgtggacc 5220 aagcaccgag ggttcgtttc aaacgaagtt cgcggcagac cgcgaagcac cggtagagac 5280 cgaccctgta ctacaactcg tcaacagccc cgtcgctgac atgtttacga acggggaatc 5340 agacgaatca tcgctggtac ctgtatttgg tcgacggtcg tttgtggatg acatttgctt 5400 cggtggcgag gatttcgaca gctgcctggc gacgctggac cgattgctgg caagatttgc 5460 acagtgtcgg atcagcatta gcttcaccaa gagcatcttc tgccagtcca aggtggactt 5520 tctgtcgcat aaaatttcgc cagaaggtat cagggctgat cctaagaagc ttgctgccat 5580 caccgagctt tcgtttccaa cgatcaagaa gggcatgcag tcgtttcttg gagcggttaa 5640 ttactacagc cgcttcattc aagacttcgc ggtctacggt gcggcgctgt accagctcaa 5700 ggatgaagac tttgtcgttg aaggtggcct ttctgtggca cgtcgttcct tcaaaaaatt 5760 gaagacgagt gttttacatt cacccatcct caggcacttc gatcggtcga aagaagttca 5820 cgtcatgctc tttgcgaatg aatgggcgtt gagcactacg ctaatgcaag aacatgaagg 5880 caagttacac cccgtacggt tcctcggtcg ggtgctcaaa aaggccgaga tgaactatca 5940 tcctgctgag aaggaggttt tggcgttact tctgctgttg aagatctgtt acgtccagct 6000 ggcaggaaag acgctacatg tctatacacg attctcgacg ttagagtggg tgcataagtc 6060 gaagtctctc ttcggacgcg cggtccagtt cgcagtgctg ctatcgcagt ggcaccttaa 6120 ggtgcagcgc gtgaaggaga aggatgtcgc ctttgcgcag ctactgcagt caagcatcac 6180 gagcttcgtt gacctggaag actcgctcgc gccggtggcg cctccaaaca agggttcccc 6240 gactattcga atggaccccg cgttgctgta cgccaggctt tcccgtaatt acagcggatt 6300 cgtcatgtct tttgacggat cagcgaagac agagaagtac ggtggctacg ggagttgttc 6360 atgggtgctg tggagccttc ctgagtggaa ggtagtgatt gctgcaaacg cttacctctc 6420 ggctaccacg gtgaatgagg cagagtataa aggtatgatc aacggtgtca aggctgctat 6480 tgcgcacggt gccgaggatt tagtcatcgt tggtgactca aggctcgcga ttcaacaatc 6540 actaggggtg atagcatgca ggaaggaaac tttgctagcg ctgctgaata ctcacaagga 6600 actcacggcc aagcttcgat cagttaaata tcttcacgtt gtacgagaat acaacgcggc 6660 cgcggattcg ttagccactg aagcgctgga atcgaaggtc agtcgagtaa tcttggctga 6720 aactcgcaag tcggaattgg catcgctgaa cggcatccag gaaatgatct acgagccgga 6780 tgaagactcg gtagatgttt cgtcacacgg agcagagcgt caagtacatg tactgtcagg 6840 cagcgagtct tcaaagtgga aaactttcga aaatttcgtg gttgattaca gcttaccaaa 6900 gtgcgattat ggtaatatag cagtgaggac tcggcgacag acgaaagcca agaaacgagt 6960 caggtttgca gatgaacact cggaggatgt ctcaaaagct caaaaacaga atgaagaacg 7020 acgagagacg tccaccgaag attcattcgg cgaagatttg ccagaccatc ctcacaagac 7080 tgtaccagcg gcatttcccg atgcggaaga tgttgatccg gtagcgatac agcgggaacg 7140 acgcagacgg atacaggtgg cacaagacga ggagcagaag tggtttagta tcaagaaggt 7200 gctccagggc caagcacaag agctgagtta caaagaagct cgaaatgcct ggaaatacgc 7260 tgaccggttc gtgttatcag aagacggcgt gcttcactat cttggattga atcgtcggta 7320 cgaccacggt tggcaagagg agaccaagct gcggcttgtg gtaccgacaa cgatgattca 7380 agaggtcttg cagaactgtc acgactcgct ggaaggagga catcaaggcg tggtgagaac 7440 gttccaccgc gttaagtccg attattattg gatcggcttg tacgccgacg tggagaagca 7500 tgtgaagtca tgtccagatt gcagctcgag taaaagccgt ccacaacttc gtggatactc 7560 acctggtaac gtgctagccg aacgaccttt ccagatcgtc tcgatggatt ttgtgatccc 7620 actaccgaaa tctcgtaggg gcaacacggc gttgctccta tttcagtgct cgttcacggg 7680 attcgttatt gccaaggcta tgtcagatac gactgcactg agtgttgccc aagtgttcga 7740 ggaatgtgtg taccgacggt tcggaacccc atcattaata aggcatgacc gcgacccacg 7800 cttcatgagc gaggtgttcc aagcgctcgc agagatgatg cagtcaagat caagagcgac 7860 tttgagctat cggccacagg ctaatggaca gcaggaacgt tcggtgaagt cagtgatggg 7920 gtccgtacgg gtgtacgcgg aagacccttt acagtaagat tgggacgaaa tcgcggagaa 7980 gctagtattt gctattaata cttctcaaga cactacgagg aaggaaacgc cgttctacct 8040 cgttcatggt tgggatgcgc agtcgacgtt gcgggcaatg tcgtcatcac tcaaacgagg 8100 actcggcaag cagtcagacg cactggcgtg gcggcgtgag atcaatcgac aacatgaggt 8160 cgccctcact atggccaagg attatcaggc tgtagaaaag gagcgaaggg caaaaaagca 8220 taatgatgct ctgagtcgac tggtaaaagc tgctgtacct caaccaagtg gaaacgaaga 8280 ctcggcggac cctccagaag cttcggaaga gatggaagat cctgcaagag ccccaccgag 8340 atctcttttc gagattggga gccgggcgtg gctgtacatg gaacgcgtca aaccgggctt 8400 gactaggaaa ttagctcacc gatggcatgg accttttcgg atcaagcgca aggtggaaga 8460 gtttgcgtac gagctggaac tgcctgatcg aagtgggtat cgcttttacc cagtagtgca 8520 tgtgtcaaga ctcaaagctg tcaacgaatt caacagtcga ccgagcactc ggttggtact 8580 tgacgcgact aatgaagcaa gactcgactt cgatgaggaa ctactgcctg aggacagctg 8640 ggagcagacc aagttgccgg tgaatatgaa gtcgaggcca tcctcgacga cagaacacca 8700 ctaacgacga gcacggagcg tgctgtacgc gagttcaaag tcaagtgggt tggctatgaa 8760 gatacaactt ggggaccatc atcaaacttg tcatgtggag gtctgctgta cgactatttg 8820 cgagccaaga agagcgagaa tcggctgcag atggcgcagg tggcggacga agactagcgt 8880 gactggatca cgtgtgaact gtccacaggg cgatgcagcc tgtggtaaca gacgaaaaac 8940 gttactgcaa caacaaattg tatatgcatt tgaagaacaa catgaacatg attacgctgt 9000 ggaagtggat taagaataag aaaacgtgaa tgccgactgg agagcggcca ctgaaaacga 9060 agtcacgtgg gatacctcaa cagttggctg agatgctgga gaacgtcgtg gaacacgcag 9120 cgaggacatc atcgaaacca acagcagtct cgaggcgacg ctgagtgtgc atatcgccgt 9180 ggagaggagg cgcaacgctg agctgcactt ggtgacgagc cattgcagtc aagtacggga 9240 ttatcgaggt catcatgtga tcgaccgatg cctccgtact ttcagccagc atggcgtgca 9300 gcgaatcttc ggtgagtggt ggtggaccac cagctggggc aggaggagca gcaggagcca 9360 tctccgcgga ttcagcgacg acggggagtg ctgcaggagc taccgcaggg agtgaagagt 9420 ccggggcagg aagcgccgaa ggaccagtcg atgacgccgt tgtcggagga agtgcagcag 9480 actgaagggc gttcgaaccc tcggtcttgc cctcctgaga aacaagtcga gtaatgcgag 9540 gtgatgagca aggtaccgat gattcaaggg aaggatgagc tgacgtacct ccagctgttc 9600 acgttcgcga cgtctacggg gattgagacg ctgaaatgcg tcggacacga ctcgattcag 9660 gcgcttggac atacggtggc gagatggtga attggagaat gaagaaatgt cacaacgggc 9720 accagtaccg tggcttccat tgcgacaggg gcagt 9755 // ID L1-2_VC repbase; DNA; PLN; 8021 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-2_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-8021 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 481-481 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 1% divergent from copies of CC L1-2_VC. L1-2_VC is usually inserted into long tracts of (TACA)n. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 122..2182 FT /product="L1-2_VC_1p" FT /note="ORF1." FT /translation="MSQRRPAVAVSRGNVQNGRQPTSAARPQSIPTKKIKA FT VSGFYGTNEGLAIYRATLELEPIVVTVRWPAGSDTGDIIAQIYGPLGLQIL FT ATIGQIFRSNQEFNRWGGPRIQKRLLYPMGRERHIVMELSILVPKGGLAAL FT TAARRIVNGRLRVPGVQLTPNMEPMEVELLVKNQQQAKPIVWEVRGVPVGL FT SCQGTADFLTRAYRADPSPQDVTEFSLLAPTTMADTWRLELTSNRGLPREL FT PFEYGEPSEACHQKGTLQAIRKTPPEGEPFLMPQPPPRAALAQQQRGDGAA FT TSTRPGHSGQVTGVQGRLTRFLSPMDFDAIQRDRGHCSGAAEGGPAGVNPL FT GPPSGPKPRRAVDDGSGLNGVRGGKGDNSGSGPSIPPQGSSEGDAETSWTV FT MGRKGRKTPATAAKAAPAETNPFLVLAELRGEEDAPTDVPAPMGGNTPMAT FT QQPGDPAAATTSPAANPNGISSTPTAMAVEGAPAAAALPGAPEAAALDPTP FT PPTVNPNGISSAPTATAVEGAPATAALPGAPEAVALDLTPPSAAPDLHKGK FT ACKPRQTQGIKKIRRPDLTGEARRTFFLAQTAAARAARKQSAELAQRTKDQ FT KRLIHKTSAAERRSELIQSARKQKAKDAEATQGTQASGRELGTAAAEGDDT FT IMEAESMGSPSQSLILHLPTASQPGFKDQPTATPTQLC" FT CDS 2185..6111 FT /product="L1-2_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MEATTTIKRQQGAMQGRPLRIATQNMQGLLAKHKDKI FT HAAAKQWIEMGLDVICLQETHHTNAHHQSLFERELSMAAATAHSQGWRVVA FT SSWSNSIHTGGVLTLVRQGLTATVETKPNKPSVQGRLTSCLLRWGGHCIEV FT CNIYVPTGTTHRAAALRQELISNILAATATQADTNNDTTLIWAGDFNFVEN FT PALDSTAGEDGRRGDGPIAEMLRTAGPAMMDSHRQLHPLRHDYTHLYRAPR FT PGGSRLDRIYVNQAVMPYVARTEIIQHTPSDHQPMVLHLLPRRVEQRGPGI FT RRVRMAFTAHEDLATSLEAWITDQCAAAPSVEDNPAGLIEWWPAFKRRLAT FT RAHQLNKTAQHRRLRPGARVQAALPAVQQARQRVDTDPGAQQPLQQLVDAQ FT AALARAHREDCSKEAMEARIHWLRAGERPSPAMTAFIQAQSADQQPAPVAL FT QAQSGRLVTNPSQLPQVVADFWSEVSRAPNYICPQAQQEVLNSLAAANISL FT PAEADEQLGSRTITATELRKALKKSQPGKAPGWDGIPADIYRKFWSAIGTT FT MAGLLTAIGLTGQVPKGFLEGVLTVIYKKGDPKLPGNYRPITLLCSDYRLL FT TKVLANRLGPALGQVITPEQSAFLPRRLIGASVLFLRHLSHLLRKQNRRGL FT LAFLDFAKAYDTVDRGFLLAAMETMGAGPQLCAWVRLLLSETRARAMVNGY FT KSKLVNMEAGVRQGCPLAPLLYLFVAQALQCWLRSQDVGIKLQPADSQPVT FT ACQYADDTEVALQGEDSVPSFLQAMDTFARASGQRLNLDKVELLWIGQLNQ FT QQAQPATQAGPQSAAPQQESIGGLKVVTTATALNLPIDNQPSPPQPDWMKR FT LGEAKRRLQRLSRFPLSAFGRATAASVYGMQTVTWHMEHGGPPPNRTLDEI FT ERLTARLVDRQQGPEDPGRRLTGVPKDLLTGHPSAGGFGLLPLQQHIQARH FT AVWAVRFIIAALGLSNASCGPGTGGAAGTTGGTGGHGRADGGLHPWVRTLS FT AYMLLTHPAFQPWALTTASQAGPRLGGSDLPTDISRIVGALGHLPPLRDIE FT TSPLSPGPWCWATALWGNPLLPNTGEADPDSLNRRPGLETHFVGIATCRKL FT QTVGDLVRVWDLVVHTRVASLPRSTWPEWVRTHLDPSTPAPTRDRSATLAA FT LKTLHGAINPAWLEAARAVETQQQQQPHRRHSCSHSRSQPQPQPQPQPQPQ FT PQPQLQPQPQPQPQPQVQPQQLQTQPQLQTQHQPQPQQPQQQLQTQPHEQQ FT PQQQQPERPTAGDMAAPSTPNSTQAMAMILKRVGWQIRAAQQPSHSHA" XX SQ Sequence 8021 BP; 1798 A; 2545 C; 2475 G; 1203 T; 0 other; tgtatggatg agaccaagct tgactaagct gctactatga ccgtcggcca accgcggccg 60 tggccaccga cagcgacctc aattgtttga gcgtagttat ggttatctaa ttagcctgaa 120 aatgtcgcag aggcgaccag cagtggctgt tagccgcggc aatgttcaaa atggccgcca 180 gccgacctca gccgcgagac cgcaatccat accgaccaaa aagataaagg ccgtcagtgg 240 cttttacgga acaaatgaag gcttggctat ctacagagcc acactagaac tggaaccgat 300 cgtggtgaca gtccggtggc cagcgggctc agatacgggc gacatcatcg cgcaaatata 360 cggtccatta ggacttcaaa ttctggcaac aattggccaa atcttccgca gcaaccagga 420 gttcaaccgt tggggaggcc cgcgcattca aaaacggttg ctttatccga tgggaaggga 480 acggcacatt gtgatggaac tctccatcct tgtgccaaaa ggaggtttag cagcgttgac 540 agcggccagg cgcatcgtta acgggcgatt gcgcgtgcct ggggtgcaat tgaccccgaa 600 catggagccg atggaagtgg agctgctggt gaagaaccag caacaggcta agcccattgt 660 gtgggaggtg agaggcgtcc cggtcggcct cagctgtcag ggcacggccg acttcctcac 720 ccgggcatac cgggcagacc ccagtcccca ggacgtcacg gagttctcgc tcctggcccc 780 cacgacaatg gccgacacgt ggaggctgga gcttaccagc aatcgcggcc ttccgcgaga 840 actccccttt gaatacgggg agccatcgga ggcgtgccac cagaagggca cccttcaagc 900 gatcaggaag acccccccgg aaggggaacc tttcctgatg ccccagccac ccccgcgagc 960 agcactcgcc cagcagcaaa ggggagacgg ggcggcaaca agcacccgcc caggccacag 1020 tgggcaggtg acgggagtac aggggcgact gaccagattc ttgagcccga tggatttcga 1080 tgccatccag agagacaggg gtcactgctc tggcgcagca gagggggggc ctgcaggagt 1140 taaccctctg ggacccccca gcggccccaa gcccagaagg gcggtggatg atggcagcgg 1200 gctgaatgga gtgagggggg gcaaggggga caacagcggc agtggcccct ctatcccacc 1260 ccagggcagt agtgaaggtg atgctgagac gagctggaca gtgatgggca ggaaggggag 1320 gaagaccccg gcgacggctg caaaggctgc accagcagag accaacccct ttttggtgct 1380 ggcggagctg aggggagagg aggacgcccc cacagatgtt cctgctccaa tgggggggaa 1440 tacaccaatg gccacacaac aaccggggga tccagcagca gcaacaacat cccccgcagc 1500 gaaccccaat gggatttcat ccacacccac ggccatggcc gtggaaggag cgccggcggc 1560 agcagcactg ccgggggcac cagaagcagc agcactggac ccaaccccac cccccacagt 1620 gaaccccaat gggatttcat ccgcacccac ggccacggcc gtggaaggag cgccggcgac 1680 agcagcactg ccgggggcac cagaagcagt agcactggac ctaaccccac cctcagcggc 1740 accggacctc cacaagggga aagcatgcaa gccccgccag acccaaggaa taaagaaaat 1800 ccgcaggcca gacctgacgg gggaagccag gcgcacgttc tttctggcgc aaacagctgc 1860 agcccgagca gcccgcaaac aatccgcaga actggcccag cgaactaagg accagaagcg 1920 gctgatccat aaaacgtcgg cagcggagag acgcagcgag cttatccagt ctgcccgtaa 1980 gcagaaggcg aaagatgccg aagccaccca ggggacccag gcctcgggga gggagctggg 2040 gactgctgct gcggaggggg acgacacgat tatggaggcg gaatcgatgg gctccccatc 2100 ccagagccta atattacacc tccccaccgc ctcccaacct ggttttaaag accagcccac 2160 tgccaccccc acccaactct gttgatggaa gcgacgacca caatcaagcg ccaacagggc 2220 gcaatgcagg gacggccact tcgtattgca acacagaaca tgcagggtct gctggccaaa 2280 cacaaggaca agattcatgc agcggccaaa cagtggatag agatggggct ggatgtgatc 2340 tgcctgcagg aaacccacca caccaatgcc caccaccaat ccctgtttga acgcgagcta 2400 agcatggcag ctgcaacagc ccacagccag ggctggcgag tagtggccag ctcgtggtct 2460 aactccatcc acacgggggg cgtccttacc ctcgtccgac aaggcctaac agctaccgtg 2520 gagaccaagc ctaataagcc gagtgtacag ggtcggctga cgagctgcct gcttcgctgg 2580 ggaggacact gcattgaggt ctgcaacatc tatgtcccca ccggcactac tcatagagca 2640 gcagccctca ggcaagaact gatcagcaac atcctggcag caacggccac gcaggcagat 2700 acaaacaatg acaccaccct tatatgggcg ggggacttca actttgtcga aaacccagcg 2760 ctggactcca cagcggggga ggatgggcgg aggggagatg gccccatagc agaaatgctc 2820 cgcacagctg ggccagccat gatggatagt caccgtcagc ttcatcccct gcgccatgac 2880 tacacccacc tctaccgagc gccccgccca ggaggctccc gactggatcg catttatgtg 2940 aatcaagccg tgatgccgta tgttgctcgc acggagatta tccagcacac cccgtcagat 3000 caccagccga tggtcctaca cctgctgcct cgccgggttg aacagagggg cccgggcatt 3060 cgccgggtgc gcatggcctt cacggcgcat gaagacctgg ccacgagcct ggaggcctgg 3120 attaccgacc agtgtgccgc ggccccatct gtggaggaca atcctgctgg cctgatcgag 3180 tggtggcctg ccttcaaacg ccgcctcgct actcgtgcac atcagctcaa caaaacagca 3240 caacatcgca ggctgcgccc aggagcccgt gtacaagcag ccctaccagc agtccagcag 3300 gcccgacaaa gggtcgacac agatcccgga gcacagcagc ccttacagca actggtggac 3360 gcacaggcgg cactagcacg ggcccaccga gaggactgca gcaaggaggc gatggaggcc 3420 cgcatacact ggctacgggc aggggagcgg ccgagcccag ccatgactgc gttcatccag 3480 gcccaaagcg cggaccaaca accagctccc gtcgccctgc aagcccagtc cggccgccta 3540 gtgactaatc ctagccagct tccccaggtg gtcgcagact tctggagtga agtgagccga 3600 gctcccaact acatctgccc ccaagcccag caggaggtgc taaactccct ggcggccgcc 3660 aacatctcgc tacccgcaga ggcagatgaa cagctgggat ccagaaccat cacggccacc 3720 gagttacgaa aggctcttaa gaaaagccag cctggcaagg ccccggggtg ggacggcatc 3780 ccagccgaca tctacaggaa attctggtcg gccattggca ccaccatggc tggcctgctc 3840 accgccatag gcttgacggg gcaggtgccg aagggcttct tggagggggt actgacggtg 3900 atctacaaaa aaggcgaccc caaactccct ggcaactacc gtcctatcac cctgctttgc 3960 tcggactacc gactgctcac caaagtgctg gcaaaccgcc taggccctgc ccttggccaa 4020 gtcataaccc ccgagcaatc agccttccta cctaggcgcc tcattggagc tagtgtgcta 4080 ttcctgcgtc acctgtcaca cctccttcgc aagcagaacc gccgggggct cctggcattc 4140 ctggacttcg ccaaggccta tgacacggtg gatcgtgggt tcctcctggc agcaatggag 4200 accatgggtg cagggccaca gctctgcgcc tgggtacggc tgctgctgag cgaaacgcga 4260 gccagagcga tggtgaatgg ctacaaatcg aagctggtga acatggaagc aggggtacgg 4320 caagggtgcc ccctcgcacc cttgctctac ctcttcgttg ctcaggccct acaatgctgg 4380 ctccggagcc aagacgtggg gatcaaatta cagccggccg actcacaacc agtcaccgcg 4440 tgccaatatg cggatgacac ggaagtggcg ctgcagggtg aagactcagt accatcgttc 4500 ctccaggcca tggacacctt tgcccgggca tctggccaac gcctaaatct cgacaaagtg 4560 gagctgctgt ggattggcca attaaaccaa cagcaggcgc aacctgcaac ccaggccgga 4620 ccccaatcag ctgcccctca gcaggagtca ataggaggtc tcaaggtggt gaccaccgcc 4680 accgccctga acctgccaat tgacaaccag ccatccccgc cacagcccga ctggatgaag 4740 agactcgggg aagccaagcg gcgactgcag cggctctccc gcttcccgct atcagcattc 4800 ggtcgagcca cagcggcatc ggtgtacgga atgcagacag tcacctggca catggagcat 4860 ggtgggccgc cccccaaccg tacgctggac gaaatagaac gcctaacggc ccgcctcgtc 4920 gaccggcagc agggcccaga agaccccggc cgccgtttga caggggtgcc taaggatctc 4980 ttgaccggcc acccgtcggc tggaggcttt ggcctgctgc ccctccagca acacatccag 5040 gctcggcatg cggtatgggc tgtgcgcttc atcatagcgg ccctcgggct atctaacgcg 5100 tcatgtgggc cagggacagg tggagctgca ggaaccacag gtggtaccgg gggacacggg 5160 agggcagatg gtggtctcca tccctgggtc cggacgctct ccgcctatat gctgctcacc 5220 caccccgcct tccaaccgtg ggccctgacg accgccagcc aagccgggcc ccgactcggc 5280 ggaagcgacc tacccacgga tatcagccgg attgtgggcg ccctgggaca cctaccaccg 5340 ctccgggata tcgagaccag ccccctgtcc cccggaccgt ggtgctgggc aaccgcgttg 5400 tggggtaacc cgttgctccc caataccggc gaggcagacc cagacagttt gaaccgccgc 5460 ccgggcctgg agacgcactt cgtggggatc gctacatgca ggaaactgca aacggtgggc 5520 gacctagtgc gggtctggga cctagtggtg catactcgag tggcctccct ccccaggtcg 5580 acctggcccg aatgggtcag gacacacctc gacccatcaa ccccagcacc cacgcgggac 5640 aggtcagcga ccctggcagc ccttaagacg ctacatggcg ctatcaaccc ggcctggctc 5700 gaagctgcaa gagcagtgga aacccaacag caacagcaac cccaccgcag gcacagctgc 5760 agccacagcc gcagccagcc acagccgcag ccacagccgc agccacagcc gcagccacag 5820 ccgcagctac agccgcagcc tcagccgcag ccacagccgc aggtacagcc acaacagctg 5880 caaacacaac cacagctaca gacacagcat cagccgcagc cgcaacagcc gcagcaacag 5940 ctacagacgc agccgcatga gcagcaaccc caacagcagc agccagagag gccaacggcg 6000 ggggatatgg cggctccaag cacccccaac agcactcagg cgatggctat gatcctaaag 6060 cgggtcggat ggcagatccg ggcggcacaa caaccgtccc actcacacgc ctgacggtcc 6120 gcctagcgac acagctgcaa tgcggggcca ccgaggagaa acggggacgc ttgatggcag 6180 catttgtgca agaagcgttg gacccgcagg aaacggcacc ttcctcctca gcggaaacaa 6240 gccgcttcag ggcgacgcaa gcccgcttgt ggtcgggggt gcggtgggag aacgagaaca 6300 aagaaacgct gtggcggctc gccgtggacg gcatccccct gcccggcaac acgcacctgg 6360 cccgcatggt gccgagcgct gtgggtgtgg agggttcggc aacgccagca accagcactg 6420 ctccccacgc atgcaccact tctgggagtg ccccgtcgca caagctgtcc gggagcagat 6480 tgaccgacac atacagccct cccaggaggc agcgacaggc ggcatcaccc ggaagcagct 6540 gtggttggtc caagccccga ccggctgcga gcaggccccc tgggatgtga tcgccctggc 6600 ggccctgtct gctatggagg taggcaggtg ctgcctgcga gcagccggaa ggcgactgga 6660 aagggcggct aaccccgcga cagaacagcc agagcaagcg caacagatcc aggcgcaagg 6720 gccccaacag cggcggataa cggacttctt tcacctggcc aacggagtga gaccgcacga 6780 ggggccgccg ctgaacgcgc cggtactcga ggatcaaacg caggggccca tcgcgggacc 6840 ggggacggca acagcagcag caacagcagc agcaacagca cagcacacag cagcagcaac 6900 ccccctggaa tacgcccgcg ctcgggcagt agtggacttc tgggcgcgct tgcgctcttt 6960 caccgcgctc aatgtcccaa ggcggggctg ggacggagtg ggaccccacc acccgatcct 7020 gtcaatcgtc gggggagcac tgcgctgcgc ggaggcggtg gacatcacga cctaatggtc 7080 aagcgcgcgc gggacatggg ggagggattt attgggggga gccgaccggc ggaggggggg 7140 gagaccgggg aaagggcggg gagagccggg gggggagggg aagaggcaga gagagcacca 7200 agaggatgta gggttgaggg gtggtgagtg gaaacaggtg gccgtagcga gggcgcggat 7260 gagggggagg tgggcaccca gaaggagggg ccgtactcga aggtgcgcgc gtggtgcagg 7320 actaggttct tcagggtacg agaccgggtt tttcgtgttg cggcgtctag gtgagatagg 7380 atcttgggaa ccagccgtct tggtagagcg gtattggggg ggcgccgagc tggctaccct 7440 ccccccctgt ggtttccgga ggcttgatcg ccctgcgttg ccgcagggtc ttcccgtttg 7500 agtacttttc aagttagacc cagtgctgtg gaagggcgcg gacttgtgcg gtgttacccc 7560 ctcgacgggg gctatctccc ctggactagc ccagggaggg agaggcggag gagggtagta 7620 gtctcaggag gctgtttggc gtcttgtggt gtgagctctt tgcgctcttt tttgcgtgag 7680 gatttttgag cttggtgacc tccccagccc gggaagactc gtcgggctcc cggtcgccca 7740 agtcctggta gcgagctctc tgagatgctc ggttcgttcg gtcggcagga agagcccccc 7800 agttgcgact tcgtttatgt taggagacca acgggcatag atcccgtcta gttggagcgc 7860 caaacaagcg ctgttgcgtg ccggccgtcg tttcccgtgc ggcctgaccc gggggcggag 7920 tgcatgagac taaccagccg tatgcacccg ccccccgcgc tgtgcttcgg ccctgggccc 7980 ccggcttttc agcccacagt gtaatcaacg tcatacatac a 8021 // ID Gypsy-3_PR-I repbase; DNA; PLN; 7156 BP. XX AC AAQX01000350; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PR_; KW Gypsy-3_PR-LTR; Gypsy-3_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7156 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000350; Positions 13691 20846. XX CC Positions [4355-4849] - Integrase core CC 'CCACA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 48..1082 FT /product="Gypsy-3_PR-I_2p" FT /translation="MEYERGAENLPSDSNMSVGSPNTSATHVARADCPHLS FT EPEWEALQRLSTVIGEAAVATMLRTLSPTEQHGVALGFIVKEQRETAARTS FT VSPSATPRVESLKLHVSSYVGREGEPLLRWLVEVDTAITARRIVDPLSKVA FT FAMSCLGGRARSWAYGRRLTDPTCFSTYEDFKEELKQAFEPPQNEFRSRAE FT FLDLQQGKHDVHAYAQRARYLVSNIVTNPIDEATKVVTFMKGLRDGPVKTY FT LFREYPNTLEAAIALAMQEEFSLRQAKLHVNAPRLMPRPVARPSGGPEPMD FT LSSATAADSQQRRGSTSVRCFRCGNIGHYARECTAPVHAARSRRGDTGYRH FT GQ" FT CDS 1163..4915 FT /product="Gypsy-3_PR-I_1p" FT /translation="MKIAAPSESQSHCKKQDDKPNLVILKVSSKREKSLRA FT LVDCGASNNFVRLQSLPRLDFEEVKTPRSLLEVRLATGVVVRTEKRIVRVR FT FSYQEKEFVDELIVLELDDKFDMVLGMPWLARHDPVIDWTKRTIVRFGSSS FT SATESDGPVGAAHAPHGACGPPLETARNAAVSGHPKRTPTTARVVGRRCEP FT NQQGLIQSDSRGSRSVRSDAVVSTGNVDTQLVESHSAVRRRGKEDASALRA FT DAASSADSCKRPAPEMLATSRAAGLHDEAMRDQAGLERVRPRVKPAGEYKE FT QLSTAGPGQEETRGAGLRTRSERRKREKLRKSRSGTETLQAVSAGQTQELE FT TTVETLNVLTRTSIGLQYKKMRLNNPPTLASELMSLPVTSWKRFARELHDG FT RIEQICILSDVEMITCEAEELNQLISEGADALSAKSKKERFDEQGWDSLKA FT SPFFKVLREYKDVLPDDIPAELPQDKGVQHEIDLVPGTKYCVTRQWPLPRE FT QVKAIDDFFESRRNAGQVRESKSPHSAPTFCVKKPQGGWRIVHAYNKLNDA FT TVPAQTPIPRKDVIIDSMTSSTVFSTLDLRDGFYQILMRESDISLTAVSTP FT SGMLWEWLVMPQGLKNAPATFNRCVTHLLRSVRDFAPSYFDDVFIHSRAVN FT GKSDVEMHAEHLRKLLELMRKHKLYANLKKCIFGATQIPVLGCLVGKNGVR FT PDPGKVRVINEWPTPSNVKELRQFLGLATYLCKYVSNYAGNIRPLSQLLKK FT EAAWEWTADCQQAFEAVKQGLTEAPILAVAYQDRPFHVVCDASDFAIGCAL FT MQLDHEGRDRVVYYQSRQLKPAERNYPVHDKELLAMKYALAKFRVYLLGSR FT PFVVYTDHASLRTATKSPHISQRMARWLSFFAEYNFQVEYKPGRLNVVADA FT LSRRPDYAAQEADVNAVGVVRTTTPSSSLLDDAKAAYAHDADAKQLLEYFS FT TPSDKSRQKLAKHLRARVHRYRVHNGLLLYSAVDDNADRIVVPDDHELKLK FT ITYEYHDAPTSGHPGREKTYLLLTRDFYWCHQYKWVRKHVRACEVCQRVKP FT APNSQAPLQSLPTPSECWQSISMDFVFGLPQDNKRRTGIVVFVDRFSKMVH FT LAAVPAEVTAKQTACLFVDMVFRHHGMPLDIVSDRDPRFTARFWQEVFTLL FT GTQLSMSTADHPQTDGQTERVNRVLVDTMKSYAHSFHQWSDSLPMAEFAIN FT NLVHVSTRHTPFYVNAMRHPRVPSVLGAVAPSLSGGGGVSG" XX SQ Sequence 7156 BP; 1643 A; 1976 C; 2086 G; 1446 T; 5 other; cctggtagca ctttgtagtc cgtccaacga ccgactaaca cgttcgtatg gaatacgaac 60 gcggggctga gaacctgccc tcggacagta acatgtccgt gggtagccca aacacgtctg 120 caacgcatgt tgcgcgtgca gactgccccc acctgtcgga accagagtgg gaggccctcc 180 aacgactgtc aacagtcatt ggggaagcgg cggtagcaac gatgttgcga acgctatcgc 240 cgacggagca acacggtgtt gctctgggtt tcatcgtgaa ggaacagcgt gaaaccgctg 300 ctcgaacttc ggtgtcgcca tcggccacac cgcgcgtgga gtcattgaaa ctccacgtaa 360 gcagctacgt tggaagagag ggcgagcctc tcctccgttg gcttgtcgag gtcgacactg 420 ccattacggc tcgacgtatc gtcgacccgt tgtcgaaggt tgcgttcgcc atgtcatgtc 480 ttggcggacg agcgaggagt tgggcgtacg gacgccgact cacagatcct acgtgcttta 540 gcacgtacga ggatttcaag gaggagctca aacaagcgtt tgagcccccg cagaacgagt 600 tccgatcgag ggcggagttc ctcgatctgc aacagggcaa gcatgacgtg catgcttacg 660 cccaaagagc acggtacttg gtctcgaaca tcgtgaccaa cccgattgac gaggcgacaa 720 aggtcgtcac gttcatgaag ggccttagag atgggcctgt gaagacctat ctcttccgag 780 agtatccaaa tactctcgag gctgcaattg cgcttgcaat gcaagaagag tttagcctgc 840 ggcaggctaa actgcatgtg aacgccccac ggctaatgcc acgaccggtg gcaaggccgt 900 cgggaggtcc cgaaccaatg gacctctcga gtgcgaccgc tgctgattcc cagcagcgtc 960 gtggatcaac gagtgtgcgt tgtttccgct gcggaaacat cggtcactat gcccgcgagt 1020 gcacagcacc tgtgcacgcg gcgaggagcc gtcgtggcga tactgggtat cgccacgggc 1080 aataaaaaaa ctaaagggac cagcaggcgc ggggcgccct gctggtgatg cgatcgagcg 1140 tgtcgacatc ggacacgctg caatgaagat cgctgccccc agtgagagtc aatctcactg 1200 caagaagcaa gatgacaagc cgaaccttgt catcttgaag gtaagctcga agagagagaa 1260 gtctcttcgt gctctagtgg actgtggtgc gtcgaacaac tttgttcgac tgcagagcct 1320 tccaaggctt gacttcgagg aggtgaaaac acctcgaagt ctattggaag tgaggctagc 1380 aacgggtgtc gttgttagaa ccgagaagcg tatcgtacgc gtacgcttct cgtatcaaga 1440 gaaggagttc gtcgacgagc ttatcgtcct ggaactggac gataagttcg atatggtgtt 1500 gggcatgccg tggcttgcac ggcatgatcc ggtgatcgac tggacgaagc gcacgatcgt 1560 gcgcttcggg agcagcagca gcgcgacaga gagcgatggc cctgtcggcg cagcacatgc 1620 accacatggt gcatgcggcc ctccactaga gacagcgcgg aatgcggctg tctccggtca 1680 ccccaagcga acgccaacga ctgcgagagt cgttgggaga agatgtgaac cgaatcagca 1740 gggcctgatt caatccgatt cgagagggtc tcgaagcgtc cggagcgacg cggtagtgtc 1800 gacaggtaat gtcgacacac aattggtcga aagccactcc gccgttaggc gtagaggtaa 1860 agaagacgcg tcggctctga gagccgacgc tgcaagcagt gcggacagtt gcaaacgtcc 1920 cgcaccggaa atgcttgcga cctcgcgtgc agccgggctg cacgacgaag cgatgcgcga 1980 tcaagccggg cttgaacgcg tgcgcccgcg ggtaaaaccc gccggcgaat acaaggaaca 2040 actgtccacg gccgggcctg gacaagaaga aactcgcgga gccgggctcc gcacgagaag 2100 tgaacggcgc aagcgagaaa agctgcgcaa gtctcggtca gggaccgaga cgctacaagc 2160 agtgtctgcc gggcagacac aggagttgga gacgaccgtc gagacattga atgtcttgac 2220 gcgtacgagt attggtctcc aatacaagaa gatgaggctg aataatcctc cgacgttagc 2280 gtcggagttg atgtcgctcc cagtcacaag ctggaagcgt ttcgctcgcg aactgcacga 2340 tggacgcatc gagcagatct gcatcctctc ggacgtcgag atgatcacgt gtgaagcaga 2400 agagctgaat cagctcatct ctgagggcgc ggacgccctc agcgcgaagt cgaagaagga 2460 acgcttcgac gagcaaggct gggactcgct caaggcgagc ccctttttca aggtcttgcg 2520 tgagtacaag gatgtactcc cggacgacat tcctgcggag ttaccgcagg acaagggtgt 2580 tcagcacgag attgatctcg tgccgggaac gaagtactgc gtcacgcgac agtggccact 2640 gccgcgtgag caagtcaagg caatcgacga cttctttgaa agtcgtcgca atgcaggaca 2700 agtgcgggaa tcgaagtccc cgcacagcgc gcctacgttc tgtgtgaaga aaccacaggg 2760 cgggtggcgc atcgttcatg cgtacaacaa gctgaacgat gcgacggtac cggcacagac 2820 gccgatacct cgaaaagatg tgatcatcga ttcgatgacc tcgagtactg tcttcagtac 2880 tctggatctg agagacgggt tctatcagat cctcatgcgt gagagtgata tctctctcac 2940 agcggtaagc actccgagcg gcatgctctg ggagtggctc gtgatgccgc aggggctgaa 3000 gaacgcccca gcgacgttca acaggtgcgt cacgcacttg ttgcgctcgg tgcgcgactt 3060 cgcaccgagc tatttcgacg acgtgttcat tcacagccgg gctgtgaatg ggaaatcgga 3120 cgtggagatg catgcagagc atctccgcaa gttgcttgag ctcatgcgaa agcacaagct 3180 ctatgcgaac ctgaagaagt gtatcttcgg ggcgacccag atacccgtac ttgggtgtct 3240 cgttgggaag aacggcgtac gccctgaccc aggaaaggtc agagtgatca atgaatggcc 3300 aacgccttca aatgtaaagg aactgcggca gttccttgga ctcgccacgt acttgtgcaa 3360 gtacgtgagc aactacgcgg gcaacattcg cccgctgtcg cagctcttaa agaaagaggc 3420 tgcatgggaa tggactgctg attgtcagca ggcctttgaa gcagtcaagc agggcttgac 3480 tgaagcgccg atcttggcgg tggcctacca agatcgccca ttccacgttg tgtgcgatgc 3540 atccgatttc gcgatcggat gcgcactgat gcaactcgat cacgaaggtc gtgatcgtgt 3600 ggtttactac caatcgcgtc agctgaagcc agctgagcgc aattacccgg tacatgacaa 3660 ggaactcctt gccatgaagt atgcactcgc aaagtttcga gtgtatctac ttgggagtag 3720 accattcgtg gtctacaccg accacgcatc gttgcgtacg gcgactaagt cgccgcacat 3780 atcccaaaga atggcacggt ggctgtcatt ctttgctgaa tacaacttcc aggttgagta 3840 caaacctgga aggttgaatg tcgtggccga cgcgctttcg cgtcgaccag attatgcggc 3900 gcaagaggcc gacgtcaacg cagttggcgt cgtcaggacg actacaccct catcatcctt 3960 attggatgac gcgaaggccg catacgcgca tgatgcggat gcgaagcagt tgttggagta 4020 tttctccaca ccttctgaca agtctcgtca gaagctggcc aaacaccttc gtgcccgtgt 4080 acaccgttat cgtgtacaca atggtctgct gctttacagc gcagtcgacg acaacgcaga 4140 tcgcattgtc gtgccggatg atcatgagct gaagctcaag atcacgtacg agtatcacga 4200 tgccccgaca tcgggacatc ctggccgtga gaagacatac ttgcttctca cgcgtgactt 4260 ctactggtgt caccagtaca aatgggtacg caagcacgtt cgtgcttgcg aggtatgcca 4320 gcgtgtgaaa cctgcgccca actcgcaggc tccgcttcaa tcactaccga ctccgtcgga 4380 gtgctggcag tccatttcaa tggactttgt ttttggtctt ccgcaagaca acaagaggag 4440 gactggtatt gtggtctttg ttgaccgctt cagcaagatg gtgcatcttg ctgcagtacc 4500 agccgaggtg acagccaaac agacggcatg tctgtttgtc gacatggtgt ttagacacca 4560 tggtatgcca ctcgacatcg tgtcggatcg ggatccgcgc tttacagcgc gattctggca 4620 agaagtgttt acacttcttg ggacgcagtt gtccatgtcg actgcggatc acccgcagac 4680 cgacggacaa acagagcgtg tcaaccgcgt gctggttgac accatgaaga gctacgcgca 4740 ttcgttccat caatggagcg acagcttgcc gatggcggag ttcgccatca acaacttggt 4800 gcatgtctcg actagacaca caccgttcta cgtgaatgcc atgaggcacc cacgcgtacc 4860 aagcgtactc ggtgcggtag ctccttcctt aagtgggggg gggggggtat ccggttaatt 4920 caaaacaacc ggataagcac gcagatacga gcaatgtatc agctgtgacg actcgcgcac 4980 gtactgcgcg cagtcatggc gacgacaaca cagtgtctgc gacgggcgta gacacttcaa 5040 acgacaacga acaacacgcg caggccgggt ctgctgcgaa caaggagcac gaactgaacc 5100 aggggttcag ctcggatgca atggactttg tccagcgccg acaagccgta attcggtttg 5160 tccaagatgc aatagcagct tctgtcgatc gacagaagct gaatgccgat aacaccggca 5220 gaggaaacac aaatgaattc aaagttggtt cattagttct gttagctacg cagaacctag 5280 ctaaacatgc agtttccgat ttcggagcaa gcaagcttgc tccgcgcttc attgggccat 5340 tcaccgtgtt ggcgaagcat ggcaacgcgt acacactgga cataccgtcc agcatgcgcc 5400 tgtacccatc gttttacgtt gggcgactga agccgtacgt gcagcacgaa ttacgtacgt 5460 ctggtgaccc gccaaagcgc tctcgagcgc ggcgacgcgc ttcaaggcgc cagagagcct 5520 cgtcccgacc tcgaccttta cgttcgaggt cgtctgcgca acctccgcga gctgagcctt 5580 caacaagctc agctcctgac gcagagcagc gaactgcgac gcttggagac gctcaacagc 5640 ctccaagcga gactcaaggt ttggttgacc aaacccgggg cgtcttcccn nnnnccaccc 5700 cccccccccc ccaccccacc cccgttgcga gacgcacgcg gggcaactcg ctggatcgtc 5760 cagcgaattg ttggtcatcg gaaccagacc cgaggtccgg ttcattttcg tattcgttgg 5820 agaggatttc ctccccaaca cgatacgtgg gaatcacgga atgtcctgat ggaggacatt 5880 ccggaaatgg tgacggcgta cgaaggccgc caccgccacc tccgccgaag ggcgtaaaac 5940 ttgggcgagt gctgtagtcg cctacagcac tcggataagt gctgcgatta tccgcagcac 6000 tagaagacgc ctgcgcctga aaactggcgc gcagggtctt gaggtcgtca ggtacacaca 6060 tggacgtgta cccgttgacg tcccgctcgg tgatgcgtac tgctccaggg tagcagtact 6120 cacaagcagt gtcataaggc actgcgcaag gaagtccaat accgactgca ccatggtgca 6180 gtcgttcaag tttaccacgc ttcgagaact tctcgtagcg ctcccgcgcc tggctaatcc 6240 ggtcgcgata gccagcgggg ttcttgttga agttttcaac aaaggcactc caactttgac 6300 aaagtgcctg ccactcgggc actttgcttc tgcgagaagt cttcttggtc gcaaaccatc 6360 ggagctcatg gaagagcccg atgtagtagt cgcgcctttg attcgttaac ggatcaaagt 6420 gtaatcgatt cgcgacgtca tcgtcaacga tggcgttgca cgaatacagc gcgtatagat 6480 tcggtggcgc ggtcgcaccg aatcggctgc cgatctcaga ctgagacggc atccacggct 6540 cacgcactgg ctcagtgtgc gaggccgcaa caacagcgga tggagtggag tcatctccat 6600 cccgcggagt cgtcaaggct ccagcggcag cgagcggtgt tccactgccg ctgcgcgaac 6660 gcttcgagcc cgaagcgttc gagtcgtcct cgcgtggacg acgcagaccc acattggggt 6720 cagtgtggcc cggagacaag atgtccttgt ctccttcgag ttccccctcc tcgacttcac 6780 ttccgtagtc gaggggaact ccctctccac ctggagagta gatgccaact ccggtttcga 6840 cagcaatgat cttgcctgtc ttgtttcgga tggcatgttt ctcatgccat ctcgagtggt 6900 atccagcaac agagaggcga ctctctgttg ccgcgcttgt cggcatcgcc tcgacggcga 6960 tgccagtagc ggtcgtggct gaggcagcgg ccgtcgtcgc cttggaggcg acgacagcac 7020 ttgctgttgc cgaagcggcc ggcgtcttgg acgaagacgt cgttggcgtg ctcattggga 7080 atgagcacgt gttctcccga agaaaatacg gattgacgtg tcgagaccgg cacgtcaaat 7140 cctaacgggg ggatgg 7156 // ID Gypsy1-PP_LTR repbase; DNA; PLN; 474 BP. XX AC scaffold_127; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1-PP; KW Gypsy1-PP_I; Gypsy1-PP_LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-474 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 424-424 (2008). XX DR Genome; scaffold_127; Positions 1099715 1100188. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX SQ Sequence 474 BP; 124 A; 87 C; 89 G; 174 T; 0 other; tgttagggac atagtcctta gacctttcta gagacaagtt tctagaacct tctagaaaga 60 agtctctaga aacttccaaa agattccttg aatattctct tagaatattc tttaaagatt 120 ctttaaagat tctttgaaga ttccctaaag attcctttag aaggctctag aagattctta 180 gaacattcta gtagattcta ggaagttact tgagaagctt cctagctctt gggtagttgc 240 tcgagaagct tcatagttct tgggaagctt cttgatgcgc ttccttagaa ccataggcca 300 gtagtatata taggagtcga ggctgaagag ttcttcagtc tcgacaacac atctcttgaa 360 gctctagctc aattctcttg gcgttgctct tgtactaatc tgataatcta gttcttgtca 420 tttcttcttg aacttcttgt ttagatttct tgtttgtatt tttggtctgt gaca 474 // ID Copia-4_PIT-LTR repbase; DNA; PLN; 377 BP. XX AC AATU01002813; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PIT_; KW Copia-4_PIT-I; Copia-4_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-377 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002813; Positions 3743 3367. XX SQ Sequence 377 BP; 116 A; 87 C; 87 G; 87 T; 0 other; tggagcacaa agcagtagta acagattagt tagttgatgt cagtctcatt ccagttagat 60 actaatgaat aggaggagcg caagatgtga gtggttgtga ctatgaggga gaaaaataga 120 tccgagaaag actctgagga gcttctcaag aaaggatcgt gaccatcatt ggtcctccct 180 tgcttactgt tgtaagccgg agtagtcact gagaactgaa agggggtttt gcctgcgggc 240 cttccccgat gaaacacaac tagcctcgac tccatcactt ttaaattctc actctgaaca 300 acaagtcctt catcctaact acacgacacg cccgacacca aagacaagac aactcttaag 360 tgcggacgag accatca 377 // ID Gypsy14-I_VC repbase; DNA; PLN; 5548 BP. XX AC scaffold_66; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14-VC; KW Gypsy14-LTR_VC; Gypsy14-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5548 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 123-123 (2008). XX DR Genome; scaffold_66; Positions 18960 13413. XX CC Positions [4431-4913] - Integrase core CC 'GTCCG' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 1689..5549 FT /product="Gypsy14-I_VC_1p" FT /translation="MNSHDFQIIDYELLRQLERRIGRTFSLDAAANDDGSN FT SVCKMFASPTRSFLNSDCSGHTIWMNPPTKLLSDFLRHYHRCKSYDPSISS FT CILIPTEQKRIRPYLKDMTRLMILPSGTQLYRSYRVGCQDPPPETSTYEIW FT WDPPKGKPIEPKCSITETDTQLHLFAGRLGANAVRVLPDTGATHCFVSQLM FT ATKLGLRILPTPLAPVRLADQSTVPILGECRARLRLGSFGTDLRLLVLPAL FT TVSADVILGTNFLTRYDAQLRPARSELSLLRPNGVRCTLRAMHAPSSSVSE FT SPKPEFLLLERAPARTSVVSAERVFRDLFESPGSRGLLVVVKPLTESTAHP FT PTSPIPQVNSLELPPEIETNRTLATILHEYADVFAPISGLPPDRGVHHTIP FT LEPGAQPIYRPQYRLTPLEKEEVEKQVKDLLAKGFIQPSTSPFGAPILFVT FT KKTGELRMCIDYRALNRLTIKNKYPLPRIDDTLDRLAGARIFSALDLASGY FT HQLRIHPDDVPKSAFNTPLGHFEWLVLPFGLSNAPATFQATMNRIFAPYMH FT RFVTVYLDDILIFSKTPEEHAEHLRLVLETLRKHQLHAKLSKCEFWKTEVK FT YLGHIVGSAGIRMDPNKVDTIRNWPQPKDLSELRAFVGLANYFRRFIRNFA FT SLAAPLTDLFGKQRLPDEWPPQALAAFQSIKECLSTDVLLNYPDFSKPFEL FT VSDALLNGTGAVLLQDGRPIAFTSKKFSAAERNYSTGEQELLGVVNALHEW FT RCYLQSNIPFTLVTDHHPLTYLKTQAHLSRRQARWVEFLEQFTFEWVYRPG FT KLNVVADALSRHPNLAMILCAVPPVTPSSDLPISSRIAEATRKDAWFQNPN FT NTRKFYEHPGGFFVLEEEGNHRIVVPNDPILKHEIIARSHSDRLSGHPSSG FT LPAGELHPLPIPDMPWESISMDFIVGLPKTKRQHDAILVFVDRLTKMVHLA FT PCRTTATAEQCADMMFHHVVRLHGMPQKIISDRDPRFKNLFLPALLNRAGA FT KQNTSTAFHPETDGQTERINRILGDMLRQYVSTDTEQWDRYLDAAEFAINN FT LRNRTTGQSPFFLNYGFHPRTPLQLELADTVPAAKVYVDTFHERLKLAKRF FT YQSAQDRAVQQESKKRRTVTLHVGQQVLLSTKNLSIQKGTRKLMPRWIGPF FT PITEMINSVTFRLDLPPEYRFHDVFHVSLLRPYCADVPDGPIQPPKALELD FT PVTSKPVWTIERILKHETRKLRKRTLYRFLVKWKGHTDENNTWLDSADISD FT RNLITEYWNAHPEHSEDAGSWGEEAA" XX SQ Sequence 5548 BP; 1319 A; 1492 C; 1291 G; 1446 T; 0 other; tcttttggtg tctcagtagc gcattgctat taatatatta ttctctaagt agttggctta 60 atttagcgta ccagccgcct ccctcactga agggcggctg accattgact tctgaggcgg 120 atgttctctg gaccaccgcg cactcccaac gaggttctgt tacaagccct acttgctgga 180 cttcgtcttt ctgctcaagg ttggcggctt tgagcgcgac ttcctgtcgt tccgccatgg 240 atccgccaac gaacactgat tcaatgaatg tagatgaagt cgctgtaccg ccaccgaacc 300 catcgaaccc accgaacctt ccgaacccac cgactcaagc gaatccacaa cgaaccaccg 360 aaccgactcg ggatgctggc ggctccaccg gtccatcccg tggcgaacac gaattggtgg 420 agctgaaact ccaattagtc caggctgaaa tcgaactcgc caaaatcaag aactctggag 480 ctggcccgtc aaccgcacca gttctggtgg tgagtcctga cactacgaat cttgcgcgta 540 ccgaaccccg attcacgttc cgaattgaac caccgcagcc gagcaagtcc aatagtcttg 600 aaatgtttgc caacgatttt caagactggg tcgccaagta cacaccgaac aacaccgatg 660 acgccttgtg gcaactgcgt catgcgatgc acgaataccc acctggcgct ctggactggc 720 tttccgaata ccgcaccgaa tcgcataatg ccaacaaacc gattgtttta ccggagctgt 780 taaccgcgtt cctcgactac ttcgaaccga aggccttcgg tacctaggta cgcgacaggg 840 aaactgaatc actcgaatct ttactgaaag gggagataag aatggatgct tcaaaagggg 900 tagctgaata cgctgttcgt tttcgtgaag tcgctcgccg tgctaagttt accgttcaga 960 aaccgcttgc gaaattgttt tatatgggat tgattcctga actccgaccg ctttgccgag 1020 ttgatcttcg tggtgctgaa tttaccgatc ttgatacaat tgtgcaattt gcgcttactg 1080 aagaatgaag attgcgagct cgcgggcagg gtcaatctcg cgcggctctt cactatgctg 1140 ctgccgcttc cacgaaaact aagcaccgtt ttcacggctc ccgacaggac tcttcgaagc 1200 tctccggcaa acgaaacacc gaaccacaac cgtggcgcga tgtcgttgtg aagcgcgtca 1260 gggcggaccg acctccgact accgaaccca ccgtggtggc tggaactgcg accaacgcca 1320 tgaactccgt tcgtccgcca gcgcgttccg ttgcgcctgc tggaccaccg cctccgatcc 1380 ctggaccccc tgtaatggta cctccacgac ctccgtcttc tgatgcgaag gtgtcagtta 1440 tgcaggcggc tctgaacaga cccaacgaac tatcacgaac tccgaatccg ctccgtttag 1500 gtactttcct tacgaattgg gagaagtacc aatggatgca gcaagggaag tgttaccgtt 1560 gcggcgttca gaacaaccac atcagctcgc gctgtccgaa tccgctggta acaccggaga 1620 tgtttcgccg gccagagaat ccataggagt ttgcccagtc gttttcgtgt ggcacgcgta 1680 ctggggacat gaattcgcat gatttccaaa ttattgatta tgagttgttg cgacaactag 1740 agcgtcgaat tggacgaacg ttttctttgg acgctgctgc gaacgatgat ggaagtaact 1800 ctgtctgtaa gatgtttgct tcaccgactc gttcctttct caattccgat tgctctggcc 1860 acactatctg gatgaatcct cccacgaaat tgttatccga tttcctccgt cattaccacc 1920 gttgcaagag ttatgatcct agcatatcct cttgtatttt gattccaacc gaacagaaac 1980 gaatacgacc ctatctgaaa gacatgacac gacttatgat tttaccgtcc ggaactcagt 2040 tgtaccgttc atatcgggtt ggttgccaag atcctccgcc tgaaacgagc acttatgaaa 2100 tttggtggga tccacctaaa ggaaaaccga ttgagccgaa atgttcaata accgaaaccg 2160 atactcagtt gcatctattt gctggacgcc ttggtgctaa tgccgtgcga gttcttccgg 2220 acactggcgc tacgcactgc ttcgtttccc agctcatggc taccaaactt ggcttgcgga 2280 ttttgcctac gccgcttgct ccagtgcgcc tggccgacca gtcgaccgta cctattcttg 2340 gtgagtgtcg agctcgtttg cgccttggta gttttggtac cgatctccgt ttgctcgttt 2400 taccggcttt gactgtatct gcggatgtga tccttggcac gaacttccta acccgttatg 2460 atgcgcaatt aaggcctgcg cgtagcgaac tcagtttatt acggccaaac ggtgtgcgat 2520 gcacgttgcg agcaatgcac gccccgtctt cttctgtttc cgaatcaccg aaacccgaat 2580 ttctgttgtt ggaaagagct ccagctcgca cgtctgtggt atccgcggag cgcgtgttta 2640 gagacctttt cgagtcgccc ggctcgcgtg ggctgctggt tgtcgtgaaa ccgttaaccg 2700 aatctaccgc acatcctccg accagcccca ttcctcaggt caattctctc gaacttccac 2760 ctgaaatcga aacgaaccga accttagcaa caatcttgca tgaatatgcg gatgtgtttg 2820 ctccgatttc cgggctacct cctgatcgtg gggtacatca tacgattccg ttagagcctg 2880 gtgcgcaacc gatttaccgt cctcagtacc gtttgacacc gttggaaaag gaagaagttg 2940 aaaagcaggt caaggacttg ctggctaaag ggtttattca accctcaaca tctccttttg 3000 gtgcgcctat cctctttgtg accaagaaga ccggtgaact ccgtatgtgt atcgactacc 3060 gagccttgaa tcgattaacg attaagaaca aatatccgtt accacgcatt gatgatacgt 3120 tagaccggtt agcgggagca cgcatctttt ccgctctcga cttggcttct ggttatcatc 3180 aactccgaat tcaccccgat gacgtcccga aatctgcttt taatacaccg ttgggacatt 3240 tcgagtggtt ggtgttgcct tttgggcttt ccaatgctcc tgcgacgttt caagcaacca 3300 tgaaccggat tttcgcaccg tatatgcacc gatttgtcac tgtatatctg gatgatattc 3360 tgatcttttc gaaaactccg gaagaacacg ctgagcattt gcggttggtt cttgaaacgc 3420 tccgaaaaca ccaactgcac gcgaaacttt cgaaatgtga attctggaaa accgaagtca 3480 agtaccttgg tcacatcgta ggctctgctg gtatccgaat ggacccgaat aaggtggaca 3540 cgatccgaaa ttggccacaa cctaaggacc taagtgagct gcgcgccttc gttggccttg 3600 cgaactattt ccgacgattt atccgaaatt ttgcgtcttt ggccgcgcca cttacggatc 3660 tctttggcaa acagcgcctc ccggatgaat ggccacctca ggcgctggcc gcttttcaat 3720 ccattaaaga atgcctgtcg accgatgtct tactgaatta tccggatttc tcgaaaccgt 3780 ttgagcttgt ttccgacgca ttgctcaatg gaaccggtgc tgtactgttg caagacggtc 3840 gtccgattgc tttcacgagt aagaaatttt ccgctgccga acgcaactac tctaccggtg 3900 aacaggaact gttgggtgtt gtgaatgctt tacacgagtg gcgatgttac ttgcaaagca 3960 acatcccttt cacccttgtt accgatcatc atccgcttac gtatctgaaa acacaagctc 4020 atctgagtcg acggcaggca cgctgggttg aattcctcga gcaatttacg tttgagtggg 4080 tctaccgacc tgggaaactc aacgttgttg ccgatgctct ttctcgacat ccgaatctgg 4140 ccatgattct ctgtgcggtt cctcctgtta ctccttcttc cgaccttccg atttcgtccc 4200 gaattgcgga agcgacccgc aaggacgctt ggtttcagaa tccgaataat acacgaaaat 4260 tttatgagca cccaggaggg ttctttgtct tggaggagga ggggaatcac cgaatcgtcg 4320 ttccgaatga tccgattctg aaacacgaaa ttatcgcacg aagtcactct gatcgtttat 4380 ctggtcatcc ttcttctggt ttaccggcag gtgaattaca tccactaccg atccctgata 4440 tgccttggga aagtatttcc atggacttta ttgtgggact tccgaaaacc aaacgccagc 4500 acgatgctat tctggtgttt gtcgatcgcc taacgaaaat ggtacatctg gctccttgcc 4560 gtactaccgc taccgccgaa caatgtgctg acatgatgtt tcatcacgtt gtgagacttc 4620 atggaatgcc acaaaagatt atctccgacc gtgacccgag atttaagaat ctgtttctac 4680 cggctttgct caatcgagct ggtgcgaaac aaaacacgag taccgctttt caccctgaaa 4740 ccgatggaca aaccgaacga atcaaccgaa tccttggaga tatgttacga caatacgttt 4800 cgactgacac tgaacagtgg gatcgttatc tcgatgccgc tgaattcgcg attaacaatc 4860 tgcgaaaccg aaccacgggt cagtcacctt tctttctgaa ttacggtttc cacccgcgaa 4920 cgcctctaca gttggaactt gctgataccg ttcccgctgc taaggtgtac gtggatacgt 4980 ttcatgaacg actgaaactt gcgaaacgat tctatcagtc tgcgcaagac cgagctgtac 5040 aacaggagag taagaaacga cgtactgtaa ccctccatgt tggtcaacag gtattactga 5100 gtacgaaaaa tctgtctata cagaaaggca cacgaaaact gatgccccgt tggattggac 5160 cttttccgat tactgaaatg attaattccg ttactttccg tttggatttg cctcctgaat 5220 accgattcca cgatgtgttt catgtgtcct tactccgacc ttactgtgct gacgtccctg 5280 atggacctat tcagcctccg aaagctttgg aacttgaccc cgtcacttcc aagcctgtct 5340 ggacgattga acgaattctg aagcatgaaa cccgtaaact gagaaaacga accttatacc 5400 gatttctggt caaatggaaa ggacatactg atgagaacaa cacgtggctt gattctgccg 5460 atatttctga tcgaaatctg attactgagt actggaatgc tcacccggaa cacagcgagg 5520 acgctggttc ctggggggag gaggcagc 5548 // ID Copia-1-I_FCy repbase; DNA; PLN; 7072 BP. XX AC . XX DT 21-JAN-2010 (Rel. 15.04, Created) DT 21-JAN-2010 (Rel. 15.04, Last updated, Version 1) XX DE Internal portion of a Copia-1_FCy LTR retrotransposon - DE consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_FCy; KW Copia-1-LTR_FCy; Copia-1-I_FCy. XX OS Fragilariopsis cylindrus OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Bacillariales; Bacillariaceae; OC Fragilariopsis. XX RN [1] RP 1-7072 RA Kapitonov V.V. and Jurka J.; RT "Families of self-primed copia LTR retrotransposons from diatom RT and fungus."; RL Repbase Reports 10(4), 551-551 (2010). XX DR [1] (Consensus) XX CC This family is characterized by 5-bp TSDs and a short palindrome CC at the 5' terminus of the internal portion that serves likely as CC the RT primer. This family belongs to an ancient group of CC self-primed copia LTR retrotransposons. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 113..2425 FT /product="Copia-1-I_FCy_1p" FT /note="ORF1." FT /translation="MAVTDKPTDTTSTTGGTGNALSAKEKEAKAAAAAAKN FT TANQKKKNHPSNASSKKNKQQQVAKSKFEGLASGTSPMKGIVVALANGNLL FT GQYRVLQNTMAGTAASEKAYGLDSSILELVAKVESDFVTSKSDPLKHSTVV FT TIYTKDATGADTTTPTGEKRLVCFDPILKASMDSNYFIDVKIQKANWNNYE FT RFSQAYYRTAIGNVEDVIITYCRADKRMALVETNKDLIGFLQILRSVCAQT FT NGIVKVDQEFQNLHTLHAAIAFKQAANVDDSTFSKQVQDRYKSAIFTCGKF FT AFGEVSLEKVLSALPTPTTFTAYLALKPADQVPIDKLVEERTVARLIVKNS FT LNKNLKTHLMTTYSTATGDCYPNTISDALALLSTFAVQPAKNTTTEDAIVS FT YHEASSPDPVSSIKEEAEDDLSDPEPELTIEELPSDTETNQASVMATVIAE FT ATKEDDDDRFFGASFAQLQDVDDIYDDNEPDFVTCAHVVDRPGGRQGDSTD FT FDSNSDIDHAGDRHGNSSDWDTDEWNRELEENRNRPKTGKSPITINKAHCF FT ETVVYLTAQRVKNTGTVRIKSYDTDDDDVPLVSYEYDSPTPEHIIDYSDVV FT REKLKLSGIRNIAALDDLFEGCSVAEAARRLRQQLIDVNQNALHGDTVRYL FT KEETDRHHDHLRFYKARYDRMITEIGPDDERVVFPQAHVLLHHTVVAVSIN FT QRRRKPNRWINKVTRKLVNCGINTVELLESALKGHQLNNILHRHGLPKFHQ FT MTVSGFHLILNTSDFHQGLS" FT CDS 2440..7002 FT /product="Copia-1-I_FCy_2p" FT /note="ORF2 polyprotein composed of the integrase FT and RT domains." FT /translation="MPYHPYDTGWIRTIYSSICLGWFLLSTGLLPRFTCYS FT LYNNVWITYCKIIAFMCEEIGNAVITLGETIMEIDSIVFNKINYINPIYNV FT FQRFEHMLSRLNIFTHPVIGMRPKPISRKHNSKNNKTSSGSHLHVFFARKR FT SRKRHSVISGPIPHSANGNSRTKDRTNTGSSTQSRSEHRTKVPRIPSDTFV FT SASTIYPIDDPSCQDISWYDAISPYWTGGMIWDGAYVLNHQVVSVTTDPIF FT VSDLLPAFELSATIQTPKARSGGKHVGPRTTIAIDSGSSIHIFKDAFLLAD FT IQADENSSISVRTTDSKFQIKDIGRLCDDLDTLPLPSDGYYFYPNGVANLL FT SLAMLTDTKRVVMDSAIDNAIYVFNDDGSYVRFGKTSNGMYCIDITTDDDH FT HIVMAHQTVKGESAHFSAIDCRRAAKVRDLQEALACPSDFDLANAIEHNVI FT GNSPFTRRDVRIAKQIFGPDVPAMKGKTVKNKSIMPREDDVTDIPSFIMKE FT YSNIHLAIDIMHINGIKFLISHSKHIGLIQTYCVRKNNRDAILACILKIIQ FT TYKSRSVFKVVTIEADGAFECIKHELQDKPYNITLSTCDADRHVETVERQI FT RFLKERIRAVRLMMPYKKIPKRFTVEMVLRVTMLINSLPKQNGIHSILSPR FT EIVTGKKFRCPTVKVGQYVQGHTGGTNSTDEERSIDALYIGRADNGSGHVV FT FKLSTKQPVSVNRVTIIPTTEALINTVNEIAEQEKQPEGIEFADINGRVTL FT DDFAANVINDDDSNASDVDFKMDEEYREELKKELKLEAKDKTVDESDPDSK FT GFGGDEPDSQIDFFQNPIQQHNRDTLNENEDAPIILDSRTRSGMNLANSTS FT KQECGKDKKKKKRTIFENDTNLIEDDLEDDDMMEPTITSNDDIITNDTSEE FT EEEDEPSAPRELDSDLGSYWNLAHSKQACVLSTIASYSHVEASKSTPQYGF FT NRGLKEFGAMGYEATMKELDDNLLGMGAVKMLRPSETSSSIRFEALNYLMF FT LKRKRCGKIKARGCADGRPQREYISKDESSSPTVSIYALMTSCLMDAIEGR FT KVATCDIPGAFLQADYPADKDCYLKFEGAMVTMICAIDPKYKQNIVERNGK FT EYLYAKLTKAVYGTLLGAILFYKKLSKQLIEWGYEPNCYDRCTFNKMIEGN FT QCTIQFHVDDLKISHMKQSVIDSVLDDVNKEFGTVKKPLSATTGDIHDYLG FT LTIDYSEKNKVKFTMYDYLEDILAEMPSDMNGTAPTPASNNLFDVDDDSEL FT LNEKEADFFHRSTARLLFAAKRARPDLQVAVAYLCTRVKAPTRSDYRKLTR FT VMKYLRLTISIPLVLGWDGSGKLLWSIDASFAIHKDMRSHTGAVLTMGQGA FT LMSMSLKQKINTKSSTEAELVGVDDAMNFIEWIQLFVGEQLKSINPDSILN FT KIGSDVVIQQDNTSTIQLENNGQASSTKRTRHINIRYFYVTSKIKEGSIRV FT IYHPTKEMVSDYLTKPLQGSLFRTHRNSLMGHDEDSIARYDQEYNDAKAAA FT AKDLS" XX SQ Sequence 7072 BP; 2303 A; 1527 C; 1473 G; 1769 T; 0 other; ttttataata aataatcaca gtcattgatt agatcaatcg aatcgaatca acaacaacaa 60 ccatcctaca agatatacct attagtatcc taaatactat caccttgtaa gaatggctgt 120 caccgacaaa cctactgata ccactagtac aactggtggt accggtaacg ccctctctgc 180 caaagagaag gaagcaaagg ctgccgccgc agccgcaaag aacacagcaa accaaaagaa 240 gaaaaatcat ccatccaatg cctcaagcaa gaagaacaaa caacaacaag ttgcgaaatc 300 caagtttgaa ggtttagcat ctggtaccag tcctatgaaa ggaattgtcg ttgcattagc 360 taatggcaat ctactgggac aatatcgtgt tcttcagaac acgatggcag gaacagcagc 420 tagcgagaaa gcctatggac ttgattcatc tattcttgaa ttggttgcca aagttgaatc 480 tgatttcgtt acatcgaaat cagatccgtt gaaacattca accgtcgtta ccatctacac 540 aaaagatgct acgggtgcag atactactac accaactgga gagaaacgac tagtctgttt 600 cgatcctatc ctaaaagcaa gtatggattc aaactacttc atcgatgtaa agatacaaaa 660 agccaactgg aataactatg aaagattctc tcaagcatac tatcgtacag caattgggaa 720 tgtagaggat gttatcatca cctactgtcg cgccgacaag agaatggctc ttgtcgaaac 780 taacaaagat ttaataggat tcttacaaat cctccgttca gtatgtgcac aaaccaatgg 840 gattgttaaa gtcgatcaag aatttcagaa cctccacacc ttacatgctg caattgcctt 900 caagcaagca gctaatgtag atgactccac attctcaaaa caagtacagg accgatacaa 960 atcagctatt ttcacatgcg gaaagttcgc atttggggaa gtttcacttg aaaaggtact 1020 gtcagctctt cctacaccca ccactttcac tgcatacctt gcattgaaac cggcggatca 1080 agtgcctatt gacaaacttg ttgaagagcg aacggtcgct cgactgattg tgaagaattc 1140 attaaataag aatctcaaaa ctcatttaat gactacttac tctactgcta caggagattg 1200 ttaccccaat acaatcagtg acgcgctagc gttgctatca accttcgctg tgcaaccagc 1260 caagaatact actactgagg atgctatcgt ctcatatcat gaagcatcat caccggatcc 1320 agtgtcatct attaaagagg aggctgaaga tgacttatct gatccagaac cagaactaac 1380 tatcgaagaa ttgccatcgg ataccgaaac caaccaagca tcagtcatgg caacagtcat 1440 cgctgaagct acaaaggaag atgatgatga tcgattcttc ggagctagtt ttgcacaact 1500 acaagatgtt gatgatatct atgacgacaa tgagccagac tttgtaactt gtgctcatgt 1560 cgttgatcgc ccaggtggtc gacaaggtga ttcaactgat ttcgacagta actctgatat 1620 tgaccatgcg ggcgaccgac atggtaattc aagtgactgg gataccgatg aatggaatcg 1680 tgaacttgaa gagaatagaa atcgtcctaa gactggaaaa tctcccataa caatcaacaa 1740 ggcgcattgt tttgaaacag ttgtgtacct cacagcacaa cgtgtcaaaa atacaggcac 1800 cgtccgaatc aaaagctacg atacggatga tgatgacgtc cctctcgtca gttatgaata 1860 cgatagtcct actccggaac acatcattga ctactctgat gttgttcgcg agaaattgaa 1920 actctctgga atccggaata tcgctgcact agatgatctc tttgaaggat gcagtgttgc 1980 agaagctgct aggagactac gtcagcaact tatcgatgtc aatcaaaatg ctctacatgg 2040 tgatacagta cgttacctca aagaggaaac ggaccgacac catgatcatc tgaggttcta 2100 caaagctcgg tatgatcgga tgatcactga aattggtccc gatgatgaac gcgtggtctt 2160 tccacaagcc catgttctat tacaccacac agtggtggct gtgtcaatca atcaacgacg 2220 acgaaagccc aatcgatgga ttaataaagt gacccgtaaa ttggtcaact gtggtatcaa 2280 cacagttgaa ctacttgaat ccgcactaaa agggcatcaa ttgaataata tactccatcg 2340 ccatggacta ccaaaattcc atcaaatgac tgtctccgga ttccatttga ttctgaatac 2400 atcggatttt catcagggcc tttcttaaag gaagatcgaa tgccctatca cccgtacgac 2460 actggatgga tccgaacaat ctattcatcc atctgtctag gatggttttt actctctacc 2520 ggtttactac ccaggtttac atgctactcg ctatacaaca acgtttggat cacatattgc 2580 aaaatcattg catttatgtg tgaagaaatt ggcaatgctg ttataacctt aggtgaaaca 2640 atcatggaga ttgattccat tgtgttcaac aaaatcaact atatcaaccc aatctacaac 2700 gtgtttcaac gatttgagca catgctatct cgacttaata ttttcactca tccagtcatt 2760 ggcatgcgcc caaaaccgat ctccagaaaa cacaactcta agaacaacaa gacctcttca 2820 ggaagccatc tacatgtctt ctttgcacgc aagcgcagtc gtaagaggca ctctgttatc 2880 tcagggccga ttccacattc ggcgaatggt aacagtcgaa ccaaggatcg aaccaatact 2940 gggtccagta cccagtctcg atccgagcac cgaaccaagg ttcctcgtat cccttcggat 3000 acgttcgtgt ccgcgtccac catctatcct atagatgacc catcatgtca agatatctcg 3060 tggtacgatg ccatctctcc ctactggact ggtggtatga tttgggacgg tgcctatgtc 3120 cttaatcacc aagttgtctc tgttacaact gatcctatct ttgtttctga tttacttccg 3180 gcatttgaat tgtctgctac aattcaaaca ccgaaagcaa ggagtggggg taagcatgtc 3240 ggcccacgga ccaccattgc tattgatagc ggatctagta ttcacatctt taaagatgcc 3300 ttccttctgg ctgacatcca agctgatgaa aacagttcta tctctgtacg gactacagat 3360 tcgaagttcc aaatcaagga tattggacgt ctatgcgatg accttgacac cctgcctctc 3420 ccatcggatg gctactattt ctatccgaat ggagtagcca acttgctatc gctagctatg 3480 cttactgata ccaagcgagt ggttatggac agcgccattg acaatgcaat atacgtattc 3540 aatgatgatg gttcatatgt aagatttggt aagacatcca atgggatgta ctgtatcgat 3600 atcacgaccg atgacgacca ccatatcgtc atggcacatc aaactgtaaa aggggagagt 3660 gcacactttt ctgcaatcga ttgtagaaga gctgcaaaag tcagggatct ccaagaagca 3720 ctagcatgcc ctagtgactt tgatctggct aatgcaattg aacataatgt tattggcaac 3780 agccctttca caaggaggga tgtacgtatt gccaaacaga tatttggacc tgacgtccca 3840 gcaatgaaag gaaagactgt caagaacaag agcattatgc caagagagga tgacgtaaca 3900 gacatcccat ctttcatcat gaaagaatac tccaacatcc acttagcaat tgatatcatg 3960 catatcaacg ggatcaagtt tcttatatca cactccaaac acattggatt gatacaaaca 4020 tattgtgtta gaaagaacaa tcgcgatgcc atactggcat gcatcctgaa gataatacaa 4080 acatacaaaa gtaggagtgt gtttaaggtc gtgacaattg aagcggatgg tgcatttgaa 4140 tgcatcaaac atgaactaca agacaagcca tacaacatca cactatcaac atgtgatgct 4200 gacaggcacg tcgagactgt tgaaagacaa atcagattcc taaaagaaag gatcagagca 4260 gtaagactga tgatgccgta caagaagatt ccaaaacgat ttactgtcga gatggtactc 4320 cgagttacaa tgctaatcaa ctcactacct aagcagaatg gcatccattc catattatct 4380 ccaagggaaa tagtaacagg aaagaagttt agatgcccca ctgtcaaggt aggacagtat 4440 gtccaagggc atactggggg aactaatagc actgatgagg aaagatctat cgatgctcta 4500 tacatcggtc gcgctgacaa tggcagtggt catgttgtgt ttaagctaag cactaagcaa 4560 cccgtttccg tcaatagggt tacaatcatt ccaaccaccg aagctctgat caatactgtc 4620 aatgagattg cagaacaaga gaagcaaccg gaaggaattg aatttgctga catcaatgga 4680 agagttacat tagacgactt tgctgctaat gtgatcaatg atgatgacag taatgcctcc 4740 gatgttgatt tcaaaatgga tgaagaatat cgagaggagc ttaaaaaaga actaaagctg 4800 gaagcaaaag acaagacagt tgatgaatcg gatcctgact caaaaggatt cggcggtgat 4860 gaacctgatt cacaaatcga cttctttcag aatccaatac agcaacacaa cagggacact 4920 ctcaatgaaa acgaagatgc acctattatc cttgacagtc gcacccgatc tggcatgaat 4980 ctcgctaact caacatcaaa gcaggagtgt gggaaggata agaagaagaa gaaaagaacc 5040 atctttgaaa atgatactaa tttgattgaa gatgatcttg aagacgatga tatgatggaa 5100 cccaccataa catccaacga tgacattatt actaacgata catctgaaga agaagaagaa 5160 gatgaaccat ctgctccgcg cgagcttgat tcggacctgg gttcatattg gaacctagcg 5220 cactcgaagc aagcgtgcgt ccttagcacg atcgcctcat atagtcatgt agaggcatcg 5280 aaatcaactc cacagtatgg tttcaataga gggttaaagg aatttggcgc aatgggatat 5340 gaagcaacta tgaaggaact tgatgacaac ctcctaggaa tgggagcagt caaaatgttg 5400 cgaccatcgg aaacaagcag ttcaatacgg tttgaggctc taaactatct tatgttcttg 5460 aaaagaaaaa gatgtggaaa gatcaaagca aggggatgtg cggatggtag accccaacgt 5520 gaatacatat cgaaagatga atccagttcg ccaacggtat ctatatacgc cctaatgaca 5580 tcatgtttaa tggatgccat tgaaggcagg aaggtcgcaa cctgtgatat accaggtgct 5640 ttcctgcagg ctgattaccc agctgataag gactgttacc tcaagttcga aggagcaatg 5700 gtgacaatga tatgtgccat tgatcctaaa tacaagcaaa atatagtgga gaggaatgga 5760 aaagaatatt tatatgccaa actgaccaag gctgtgtatg gtacactcct tggagccatc 5820 ctattctaca agaagctcag taaacaattg attgagtggg ggtatgaacc aaactgctat 5880 gatagatgta ccttcaacaa aatgattgaa gggaaccaat gcactatcca atttcatgtg 5940 gacgatttga aaatatctca catgaagcag tctgtaatag actcagtact tgatgacgta 6000 aacaaagaat ttggtaccgt caagaagcca ttatcagcta ccactggtga catacatgat 6060 tatctgggtt taaccatcga ctatagtgaa aagaacaaag tgaagttcac tatgtatgac 6120 tatctagaag acatactggc tgaaatgcca agtgacatga atggaacagc tcccacacca 6180 gcgagtaata atctatttga tgtggacgat gattcggaac tattgaatga aaaagaagca 6240 gatttcttcc accgatctac agctcggttg ttgtttgctg ccaagagggc aagaccagat 6300 ctccaagtgg ctgtcgctta cctctgcacc cgagtcaaag ctcctacacg ctctgactat 6360 cggaaattaa ccagagtgat gaagtatcta aggttaacta tatccatccc tctagtatta 6420 ggttgggatg gaagtgggaa gctgctatgg tcgatagacg catcgtttgc aatacacaag 6480 gatatgagaa gccatactgg tgccgtgttg acaatgggcc agggtgcttt aatgtcaatg 6540 tccctgaaac aaaagatcaa cacaaagagc tccactgaag cagaattggt tggagttgat 6600 gacgctatga attttattga atggattcaa ttattcgttg gggagcaact caagtcaatt 6660 aatcctgatt caatccttaa taagattggt tcagatgttg tcattcaaca ggacaacaca 6720 agcacaatac agctcgaaaa caatggacaa gcatctagta ccaagagaac tagacacatc 6780 aatatccgat acttctatgt gacaagcaag atcaaagaag gaagcattcg tgtgatatat 6840 catcccacaa aggaaatggt atcagattat ttgactaagc cattgcaagg gagcctgttc 6900 agaactcatc gaaactccct tatgggccac gatgaagatt caatagcgcg ttatgatcaa 6960 gagtataacg acgctaaggc agccgctgcc aaggaccttt cataattgaa tggaagggac 7020 atattgatta cattcgtatc gatgctaaca catcaatagg aatgtaggag tg 7072 // ID Gypsy-4_PSo-I repbase; DNA; PLN; 8453 BP. XX AC AAQY01000325; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PSo_; KW Gypsy-4_PSo-LTR; Gypsy-4_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-8453 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000325; Positions 77369 68917. XX CC Positions [5993-6502] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2396..3901 FT /product="Gypsy-4_PSo-I_3p" FT /translation="MAKHASESMVCDGDLEFDAVPTPSGACMGRNAGVAPG FT VAGDDQDRGEIAARVEELLATAMDETKTEALDGEAKATNPGGEPEGAQLDV FT TAEDDGGTPYALQAAIETEMKSGDVTAGKVMRVKAQKSAKEDAMAAELERQ FT RRKRQARLEHARARRERRAEGERLGDGRAVSEATGTVAPEAQGGSVMTAVG FT ETATSKDAEERAAVLASRVNTGDEEAALVVGDTELQRSRTRRRYERRVRKA FT RAKELRALRKELDRLKRPDGGYYVMELYFRRCGKGAPRVLSQEEAGAIGIA FT LPGATKVRRSRGSLPGAKQYEYHSGSVYAHPREERVEGKQRPVRIGRLRAV FT QAPAVDSLPTARVKVRGKDERIKLDTGAQYSVAGEAWCGLGERLDALPPVG FT YLEGFTGAVAKVLGVWRFRMRTQYGQIMEVDALIVEGATTEFLLGEDWMLR FT RGVKIDFVSCEMKWYDSGEKKVVPFTCSQAERYDERPAKVRLVKKARMQAQ FT TCRAVT" FT CDS 3757..5013 FT /product="Gypsy-4_PSo-I_1p" FT /translation="MRNEVVRQRGKEGGAVHVFAGRAVRRATGEGAAGEES FT ANAGTDVPCRNVTVAVAAPEGTVGIFMPKPRSKGNLLMAPTLTSVRGGKVV FT VPMLNLVGATTKLPSREVLGTWAPTSDDMTVMELNGELTNDKVKRWLDEKF FT GNAGPLGNENELKIEHMSAEDKELLLQLLRHYPALLEPRTGCPPATTLPVE FT HEIHTGSEPPIKVRPRRYAQSEHEIIDKEVKGMLRDGVIEEGNGSWGFPVV FT LVKKKDGSVRFCIDYRMLNAVTKRDVYPLPRIDDTLDNLHDARRYTSLDLH FT AGYWQVPVAPKDRDKTAFVTRQGLFRFLRMPFGLANAPGTFQRMMDAVLRG FT LMWQTCLVYLDDVIVFSRGGVGQHVVKLAMVLERLSNAGLSLKAKKCSFAT FT EYLEYLGHELNENGVRPMESLVESV" FT CDS join(5480..6706,6710..7873) FT /product="Gypsy-4_PSo-I_4p" FT /translation="MISKDLTGRVHRWALQLQEYDFEIVYRPGKDNVVADA FT LSRAPVRTVAGRGANERATGGEGQLTDGEIAEEQAKDKTVQNLKNKGKHGD FT RRVGVEGELVYIYERDGSRRVVLPSSLWAKVLRENHDSIFACHLRTSQTYT FT KIAANYWWPDMRAWVRRWVQSCRDCGTRKARANEVIPPLRSQGVGDAGDRW FT ALDVAGPLPVTDKGNRYVVTAVDYATRYAVVAAVPNHRAPDIADFIFEKLV FT LVYGPMRELVMDGAPELSGAVVEALVSALQAKQLTPVPCPPALLGLVERFH FT RTWKDMVAMFVSEAQSDWNRWLPRAAYSYNGARHSGTGYSPNELMMGRRLR FT APNELLRASGATQVGVFAEYHRALVRNMATATEAAKKALVKDQLRRARYYD FT RQVRAHNEFAVGDSVVLRPPRGKGITKQAHKWLGPARIVADAGFDNWEVLR FT EDNDERVITHCSFLVKCSCPSNSLGVVAERMLRELSEEEVTAGGAAEEQER FT TQSSEDATARAEGGTQEIRTDTSGARTTATTPVSADEASRTVTGTLPVAAG FT QEPRPMATARSGPKAAGPRIETTSAMEAAAEAVPRPLPAESKRSRWRQERP FT QAEERNDEVQKKRRRTEADEACGARAARREAARRQQEAAASKAVAADEDRG FT IHGGARADEREASAAAGRARPAQRGGVRREAGASRECGDGPGAEDAGGNGD FT RTSGVADATVGMLRGRGRPRQPAPMPELLQVATAGHIVERARRRVRNRAGR FT YVVEHEVEYTTRPGMPVGRRWLSAAEYEELLDAGKIADDLTSGDGV" XX SQ Sequence 8453 BP; 1876 A; 2103 C; 3195 G; 1279 T; 0 other; tggtggtcat gacaggcgcc ttccgggcag gagtgttcga ggcttcctgc gggcttggtg 60 tcagtggcga tgaggaggcc ctggatgagc gatccgcact ggataaatgg acgatattag 120 aaaggatgag tttggatgag aatggagtgc taactttgat tttattaccg ctattagagt 180 ctgcggaaat gacgacagcg acgagtaaca ccccacggga cgagcgcgcg gagaggcgcg 240 ccgcttctat cgaaagaaca caacaagcag cgaagcagat gacggcaagg acgttggaca 300 cgaacacagg cggctcggtc acgctgagca acgaggagat tcgagagtcg acgggcagca 360 caccacttgg agcgggagta agcgcgagcc tcggaggcat ggacgacgaa cacgtcggag 420 gcgaaatccg cggtggcggc ggcgatggcc gcggcggcaa tggccaagcc gctggcagtg 480 gacacgtggc gactgtggct gggagagtgc ccgctgcagg agaagagcgc gagcagcgta 540 gcggtggcac ccaaggcacc ggtggcgctg gcaacaacac tggtgggctt cgagctggcg 600 tggcccaagc tgtcacggca tctaggaacg acggagatca cggtggttcg gtccggcgcg 660 gatcccacca cctcggcgta cggtgccagc ggcgacgacg gatccagcga tgccggcgag 720 gttaccaagc cagccgatcg tggtgcgcga gaaggccaag tcgcttaagc tgacgaagtt 780 caagggcctt gacgacgcca tgcccgtgac gatgtggctg aagaccgtcc gagcagaagt 840 gcgccgccaa gccgtgacga tgggagtcga gtggcaggag aagcagctct accatgaggt 900 ggctgcacac ttggagggag aggcgcagcg gtggttcgcc accgtgatgg agacagtgcc 960 cgagtcggag gagagcatcg gcacgctggc ggacatgtta cgcgcgaagt acatgacgcg 1020 caggacgggg ccggaggtcg tggacttgct gaactcgcgg cgacagatgc gcggcgagcg 1080 accgctggaa tacgcgcagt cgctgcgcga gatagccgag cagggtgaca tcggtgagga 1140 ctggctcgtc aacgcgttct tgaaggggat gagtagcacg atcggcgcaa caaacgtgcg 1200 cggccatcgc cccagaaact tggacgacgc agtgaacctg gcgatcccgc atgtgggaga 1260 ctacggtgag ggatacggcg tgggcctgga ggaggacatg gccgcgtggg acgagcgcga 1320 aagcgccagt gggcgcgggc ctctggcggc ggcgagagcg gcacgagatc aggaacaaac 1380 cggactgagc ggaaacaagg ggacagtggt gacgggctat ggcccgatgt ggggtaaggt 1440 ccagaagcaa ccctgctatg atactgaggg gagaccggta agtaacggta aagccagttt 1500 ggacgagtgg tggaaggcta tcccacctga ctttcagctg gtgccaacca atcaggggtc 1560 agcggcgaac agttcaaaat tcaaacgggt ggcggcgtcc aacagacgtc cgtacagcaa 1620 caaagtggat ggcgcggcaa gcgtcaaggt ggcggcgacc agttcgtgag acgtccgggt 1680 aaggcgctga aggtcgaggg ccacactggg ggcggccagc taggagcagg aggacggcta 1740 cccgatccct ccttcgctac gcgggaaggg cggcttcagc ggaatgagca gtacgtgcgg 1800 agaacggcga caggtggttt cggggcccgc ccgaacgact actgctactg gtgcggtaag 1860 gcaggccact actcgcggga ctgcgacgta cgaaaggaag atctggcggc gcatgcagcc 1920 gcgtccgccc aggacacgac gacgacaacg gccgacgggt cgggaaatgt gcagcgagca 1980 taagggcccc ggccttatcg ctcgctagtc ctgatccgga ggaagaacga gatgaacgaa 2040 gtgtgcaagt ggccggtgga ctacaacggc ctgcgcaggg aagagaacgg cacggcaaga 2100 gaccgcgagg acggcgtggc aagaacgcga aggcgcgtat tgagcggcgc gggggggtcg 2160 agactgggga tggcgccgtg cgctagcgct tccgcgcagt cgatgcaatg aacggctttg 2220 tagtggaggt gacgcggcgc gacaggcgaa agagggcacg tggccgtccc atggcggcga 2280 ggccaagagg agcgtgaggt tcgtggactc cgaggccaat ggcaacggcc aggaaacacg 2340 cgagggcccc aagccggcag cagcggccgc gctactggcc gacgagaagg agagtatggc 2400 gaagcacgcg tcggagagca tggtgtgcga cggtgacctg gagttcgacg cggtaccaac 2460 gccgagtggc gcctgcatgg ggaggaatgc tggggtggcg ccgggcgtgg caggcgatga 2520 ccaggatcgt ggagaaatcg cggctagggt cgaggaattg ctggcgacgg cgatggacga 2580 gacgaagacg gaagccttgg acggcgaggc caaggccacg aaccccggtg gcgagccgga 2640 aggtgcgcag ctggacgtga ccgcggagga cgacggcggc acgccgtacg ctctgcaggc 2700 ggctattgag acggagatga agtcgggcga cgtgacggcg ggcaaggtga tgcgcgtcaa 2760 ggcccagaag tcggcgaaag aagacgcgat ggccgcagaa ctcgagcggc agcgtcggaa 2820 gcggcaggca cgactggagc acgcgcgcgc gcgtcgtgag cgacgtgcgg agggagagcg 2880 gctcggagat gggcgtgcag tcagtgaggc gacgggcacg gtggcgccgg aggcgcaggg 2940 cggtagcgtc atgacagcag taggcgagac ggccacgagc aaggatgctg aggagcgagc 3000 cgcggtgttg gccagccgcg tgaatactgg tgacgaagaa gccgcgctgg tggtgggcga 3060 cacggagcta cagaggtcac gaacgaggcg acgatacgag cgacgagttc gcaaggcccg 3120 tgccaaggag ttgcgcgctc tacgcaagga gttggaccgc ctgaagaggc ccgatggcgg 3180 ttactacgtg atggagttgt actttcggag gtgcgggaag ggcgcgcccc gggtgctgag 3240 ccaagaagag gcgggggcga ttggaatcgc gctaccaggc gcgacaaagg tgcggcggtc 3300 gaggggaagt ttaccaggag cgaagcagta tgaatatcac agtgggagcg tgtacgcgca 3360 tccgcgcgag gagcgagtcg agggaaaaca gcgacccgtg cgcatcggac gtctgcgagc 3420 agtgcaagcc ccagcggtgg actcactccc taccgcgagg gtcaaagtcc ggggcaagga 3480 cgagaggatc aaactggata ccggtgccca gtatagtgtt gccggcgaag cgtggtgtgg 3540 actcggcgag cggctggacg cgctgccgcc agtcggctac ttagaaggct ttacgggcgc 3600 tgtggccaag gttctgggcg tgtggaggtt ccgtatgcgg acgcagtacg gccagattat 3660 ggaggtggac gcgctcattg tcgagggcgc aaccacggag ttcctcttag gcgaggattg 3720 gatgttaagg cgcggagtca agatcgactt cgtgtcatgc gaaatgaagt ggtacgacag 3780 cggggaaaag aaggtggtgc cgttcacgtg ttcgcaggca gagcggtacg acgagcgacc 3840 ggcgaaggtg cggctggtga agaaagcgcg aatgcaggca cagacgtgcc gtgccgtaac 3900 gtaacggtgg cggtggcggc acccgaaggg acagtgggta tcttcatgcc gaagccaagg 3960 agcaagggca acctgctaat ggcgccgacg ctgacgtcag ttcgcggggg caaggtcgtt 4020 gtgcccatgc tcaacctagt cggggcgacg accaagctcc catcacgcga ggtactagga 4080 acgtgggcgc ctacgagtga tgacatgacg gtgatggagc tcaacggcga gctgacgaac 4140 gacaaggtca agcgatggct ggacgaaaag ttcggcaacg cgggcccgct gggcaacgag 4200 aacgagttga agatcgagca catgagcgct gaggacaagg agctgctgtt gcagctgctg 4260 cggcactacc cagcgctgct agagccaaga acgggatgcc caccggcgac cacgctgccg 4320 gtggagcacg agatacatac gggcagcgag ccgccgatta aagtgaggcc gcggcggtac 4380 gcgcagagtg agcacgagat cattgataag gaggtgaagg gcatgctgcg cgacggggtc 4440 atcgaggagg gcaatggctc atgggggttc ccagtcgtat tagttaagaa gaaggacgga 4500 tcagtgcgct tctgtattga ctacagaatg ctcaacgctg ttacgaagcg tgacgtctac 4560 cccttgccca ggatcgacga caccctggac aatctacatg atgcgaggcg gtacacgagc 4620 ttggacctcc acgccgggta ttggcaggta cccgtggcgc ccaaggaccg tgacaagacc 4680 gcgtttgtga cgaggcaagg actgtttcgg ttcctgcgca tgccatttgg gttggcaaac 4740 gcaccaggga cctttcaaag gatgatggac gcggtgttga gagggctaat gtggcaaaca 4800 tgtttagttt atctagacga tgttatcgtc ttctctagag gaggcgtagg ccagcacgtc 4860 gtcaagctgg cgatggtgtt ggagcgtctg agcaacgcgg ggctgtcgct gaaggccaag 4920 aagtgctcgt tcgcgacgga gtacttggag tatttggggc acgagttgaa cgagaacggg 4980 gtgcgcccca tggagagctt ggtggagagt gtgtgaactt ccccgtgccg aaggacgcgg 5040 ccgcggtgaa gagcttcgtg cacatggcgg ggtactacag acgattcgtg ccgaacttcg 5100 cggcgaaagc accgccgttg acgctgttgt tgcgcaaggg agtggtttgg cgctgggctg 5160 agccccagca agaggcgttt gaatgcttga agcgggcgct gacggagcgg ccgctgctgg 5220 cctatcctga tttctcgcga ccattcacgt tggtgacaga cgcctcgaag gtaggactcg 5280 gagcggcgtt aacccaggac caagggcagg gcgagcaacc cgtagcgtac gcatcgaaga 5340 tcaactcgaa ggacgtagcg cagtatggca ttaccgacct cgagtgtgcg gcagggatct 5400 gggccgtcaa gctgttccgc ccgtacctgt acggacggcg gttccgactg gtgacggacc 5460 acgccgcgct gaagtggcta tgatttcaaa ggacctcacg ggtagagtgc accggtgggc 5520 actacaacta caggaatatg attttgagat tgtctatcgc ccgggcaagg acaacgtggt 5580 cgcagacgct ctctcgaggg caccagtacg aacggtggct ggtagaggtg cgaacgaaag 5640 agcaacagga ggggaagggc agctgactga cggcgagatc gccgaggagc aggcgaagga 5700 caagacggtg cagaacctga agaacaaggg gaaacacggc gatcggcggg taggagtcga 5760 gggcgagctg gtttacatct acgagagaga cggtagcaga cgtgtcgtgc taccgtcctc 5820 gttgtgggca aaggtcctac gcgagaacca cgactcgatc ttcgcatgtc atctgcgaac 5880 atctcaaacc tacactaaga ttgcagccaa ctactggtgg ccggatatgc gggcgtgggt 5940 gagacgatgg gtgcagtctt gccgtgactg cggtacgagg aaggcgaggg cgaacgaagt 6000 gatccctccg ctgcggagtc agggcgtggg agatgctggt gatcgttggg cgctggatgt 6060 agcaggcccg ctgccggtaa cggacaaggg caaccggtat gtggtgacag ccgtggacta 6120 tgccacgagg tatgcggtgg tggccgcggt gccgaaccac agggcgccag acatcgcgga 6180 cttcatcttc gagaagctgg tgttggtgta cgggcccatg agggagctcg tgatggacgg 6240 agcgcccgaa ctgagcgggg cagtggtgga ggcgctggtg agtgctctcc aggcgaagca 6300 gttgacgccg gtgccgtgtc cgccggctct gctcggcttg gtcgagcgtt tccaccggac 6360 gtggaaggat atggtcgcga tgttcgtgtc ggaggcacag agtgattgga atcgatggct 6420 gccgcgcgcg gcctactcct acaatggtgc gaggcattca ggaacggggt acagccccaa 6480 cgaattgatg atgggccgac gtcttcgggc cccgaatgag ctgttgcggg cgagtggcgc 6540 cacgcaggtc ggcgtgttcg ccgagtatca tcgagcgttg gtgaggaaca tggcgacggc 6600 aacggaggcg gccaagaagg cgctggtcaa ggaccagttg aggcgggcta ggtactacga 6660 tcgacaggtg cgggcgcaca acgagttcgc ggttggcgac agcgtgtagg tgctgcgacc 6720 acctcgtggc aaaggaatta cgaaacaggc ccataagtgg ctgggcccag ctcgtattgt 6780 agcagacgcg ggctttgata attgggaagt gctacgcgag gacaatgatg agcgggtgat 6840 cacgcactgc agcttcttgg tgaagtgcag ttgcccgagt aactcactgg gcgtggtggc 6900 ggagcgcatg cttcgagaac tgagcgagga agaggtgaca gctggcggtg ccgccgagga 6960 acaagagcgg actcagagca gtgaggatgc gaccgcccgg gcggaaggtg gcacgcaaga 7020 gatcaggacg gacacgagtg gcgctagaac gaccgctacg acaccagtga gcgctgacga 7080 ggcgtcgagg acggtgacgg gcacgctgcc tgtggccgct ggacaagaac cgaggccgat 7140 ggcaacggcg cggagcgggc cgaaagccgc tgggccaaga atagagacga cgagcgccat 7200 ggaggcggcg gccgaggctg ttccaaggcc tctgccggca gagtcaaagc ggagccgctg 7260 gcggcaagag cggccccaag ccgaagagag gaacgatgaa gtgcaaaaga agcgccggcg 7320 aacagaagct gacgaggctt gtggagcgcg ggcagctcgg cgcgaagctg cacgtcgcca 7380 gcaggaagcc gcagcgtcga aggcggtggc tgcagatgaa gatcgcggga ttcacggcgg 7440 tgcgcgagcc gacgagcgag aagccagtgc agccgctgga cgagcacgac ccgcgcagcg 7500 aggaggtgtt cgccgtgaag caggagccag tcgagagtgt ggagacggcc ccggtgctga 7560 ggacgctgga ggtaacggtg atagaacgag tggtgtcgct gacgccacgg tgggtatgct 7620 tcgtggacgt ggacggccac gacagccagc tccaatgcca gagctcctac aagtcgcgac 7680 ggcagggcat atcgtggagc gggcgcgaag acgggtccgg aatcgcgcgg gccgctacgt 7740 agtcgagcac gaggtggagt acacgacaag accagggatg ccggtaggac ggaggtggct 7800 cagtgctgct gagtacgaag agctgctgga cgccgggaag atcgcggacg atcttacgtc 7860 cggggatggc gtgtagttgg ggcggaccgt cacttgcagc ggcagcgaga agaaactgct 7920 cggcgagcag gtgacgccgg tcgtgctcaa cgtggtgtac gttgcgtaga tcggggcaag 7980 agtgtgcgag ggacgtcgat cggtggcaag gactagccag ctggctgccg tcacgtgcgt 8040 gggatagcta gaagctcgaa ggttgaagat ggaagatcgc gagggagacg acacgtccgg 8100 cagggacagt gagcagtatg aggacaaggc gggtcgacat ggaggcgaag gatgtgaggc 8160 tcggaggcct cgagacgggc gatgcgcccc gaaaggggag aggtccaagc aggtagctta 8220 ggtgaagggc gccgttcccg taggtagatt gtataggggg cttcgtagga gagcggcgag 8280 cagcggcgtg ctgctcgact ctcagtcaag atttagtgca ggacgggcat taagtggaga 8340 ctaatctgag gaacttggcg ctggagcact ggttgtgaac gccggacgag gccagataca 8400 acgtaaaacg aggtacgccg tacgggaacg gcggggacgg ccggacagta gag 8453 // ID Gypsy-13_PR-I repbase; DNA; PLN; 4935 BP. XX AC AAQX01003466; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PR_; KW Gypsy-13_PR-LTR; Gypsy-13_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4935 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003466; Positions 3022 7956. XX CC Positions [2102-2695] - Reverse transcriptase CC Positions [3779-4273] - Integrase core CC 'CGTAA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 27..1088 FT /product="Gypsy-13_PR-I_2p" FT /translation="MPPATDSDARDERPQQRPRVNPQGTRWNVPPEGYTPP FT PPATATGQGENGTSAQDATAQGSTATSSSAQASFTPDMLAQLLQHTLQTTQ FT QQATQMTQLLAQTTQIQQQILQTQTRPRPSRKKSNPPRFDGSDQDDLELWI FT FSTEQYYSEFRTEMHDFSSNFSDMAFANLGTDAQAWYRDVKISLGASPLTW FT SVFKERIRARFRDKDFKFKTLTKMYELKATKSQQEYTSRFLHLLSQVDTEL FT PEVVKRWFFQQNLRADTSAYISRNVPDTLEQALEMAQRFEDAKPASTRPPA FT KELANQNAKPNYKSKNNTSKDNTIKQCNYCKRKNHTEDECRTKARDIAAAA FT ESGSSKNGSAR" FT CDS 1451..4933 FT /product="Gypsy-13_PR-I_1p" FT /translation="MYVMPIPEDKDALLGWPWLEQVNPGIDWRSRTISFRN FT DTQSSTISFRQCLRHAPARKVGRQRLRNGRCTREDDALQYFYMHHDFDSAQ FT GLTRVVAAKDLKKLLQEEDNEFGFVIQHDPDSAKADRQLAQDWDALRGHPA FT ESLLLKYKDVVFRTQLPTVPPTRNEDIKAEIELVDDEPVARKQFRLSEEMK FT TAIREWTTEMLRAGIIRRSKSPYSAPTFCVKKAVGWRVVHDFRGINSKIRL FT PATPVPRKEDIFDSMRKGKIFSAMDLLWGFFQVRLRKQDVPYTVFSTPDGL FT FEYLVTPMGLSCSPAAFNRLTQKVFADQSSCCKAYFDDLLVYTETNDMEDH FT LAALEKVLERCKEEHRYVQLSKCTFCSSEIPCLGDFIGIHGIRMDPDKVRV FT IQNWPKPRTKRELQSFLGTCVYVLKYCPDFAEYSAPLTELTKGKTRNEHLQ FT FNELHHKCFEELKRRLSKPPVLAHPDFDRMFCVKMDASDFAIGGYLYQLDD FT EGDERVIAYGGRKLSEAELKYPTREKELLAALLAMRTWHVYLIDKPFMIST FT DHRTLETILQQKTCSQRLARWLNELGMYQPLFKWIKGDSNVVADFISRNPG FT WKQDTTAISLAALLKHIGADNENNGVSTHLYASQHRGPSRNIQERCSELYQ FT SDGCFGPIVKQLRAKVNSEAAPPDAELTKSANIDHYELQDSLLFFRSHPSQ FT YWRLCVPDNRELRNLILFEEHDSVVRGHPGSLKTLKFMQQKYYWSSMARDI FT RSYCATCEMCMRTKTSRSKAQGLLHPLDVPEGRWKHITMDFVTSLPETKPH FT RHNAVMVIVDRLTKRAHFIATKSTATAQDTAKLFRDNFQRLHGLPVSIVCD FT RDSKFTSKFWTKLLDLQDTKLKPSSAFKPSTDGQTEITNRFLGDFLRAYVN FT PHQTDWNEFLALAEFAYNSRVHASIGMAPFVADLGYLPRSVSDLVVPPRDG FT PRSASRFVDTQQTILTECQDALEQAQQRMKFYYDRNRPTTSFRIGDQVLLD FT TSNLALHHVGNDGKRSLAPKYIGPYHVLKITTPDTYKIGLPPGLKLHDEFH FT LSRLRRYTPDDSATQDNRVPALITHDGSLGLQVKEILKHRVRCGADEYFIR FT WYGSANQDSWEPAESLIQVRGLIDAFHTRAKHHGLGHALKRLKQPLRRFPK FT GG" XX SQ Sequence 4935 BP; 1318 A; 1379 C; 1184 G; 1054 T; 0 other; gttaattaac tattagtaag cgagcgatgc caccagcaac ggattcggac gcacgcgatg 60 agcgccccca gcagcgtcca cgtgtcaatc cgcaagggac gcgatggaat gtgcccccgg 120 aaggctacac ccctccccca ccagctacag caactgggca aggtgaaaat ggcacctcag 180 ctcaagacgc tacggcacaa ggctcaacgg caacgtcatc ttccgcacag gcctctttta 240 cgcctgacat gttggcgcag ttgctgcagc acacgctgca aaccacgcaa caacaagcga 300 cgcagatgac tcaactcctg gcgcaaacga cgcagatcca gcagcagatc ctgcagactc 360 agacacgccc aagaccatct cgaaagaagt ccaatccacc acgctttgat ggcagcgatc 420 aggacgactt ggagctttgg attttctcca cagagcagta ttactccgag ttccgtacgg 480 agatgcacga cttttcgtcg aacttctcgg acatggcctt tgccaacctt ggcacggacg 540 cccaagcatg gtatcgtgat gtgaagatat cgcttggggc cagtccgctt acatggagtg 600 ttttcaagga gcgtatccgg gcgcggttcc gcgataagga ctttaagttc aagactctga 660 ccaaaatgta cgagttgaag gctacaaagt cccagcagga atacacatct cgcttcctgc 720 acttgctctc gcaggtggac actgaactgc ctgaagtcgt caagcgctgg ttttttcagc 780 aaaatctgcg tgcagacacg tcagcgtaca tttcgcgaaa tgtgcctgac actctggagc 840 aagccctcga aatggctcaa cgttttgagg acgcaaagcc cgctagtacg cggcctcctg 900 caaaggagct ggcgaaccag aacgccaaac ccaactacaa gtcaaagaac aacacctcca 960 aggacaacac gatcaagcag tgtaattact gcaaaaggaa aaaccacacg gaggacgagt 1020 gccgtacgaa ggcacgcgac atcgccgctg ccgcagaatc tgggtcgtca aaaaatggct 1080 cagctcggta gggtggcaac ctaccgagcc aacaaggtca gaaagctctg gcagtaagct 1140 ttctgcaccg ccatcgtctg gtgaagccgc tagcagcagc tcaaaccgcc tagcttttta 1200 ttcggacaaa ctctactgct atttgaccca ggacgcacaa attcacaaca acgttgctac 1260 gtgtttcgtg gacagcgggt cgtcattcaa cgccatctcc ccaaagctgg cacaaaagct 1320 ggacgtcgaa gtgaaacaat gccctgaacc gctatcagtg aaaatcggaa acaatcaacg 1380 catcacaatc ccgcgcaagg aagccgttct taccgttaaa atcgaaggct ttcccgagta 1440 caagtcgtcg atgtacgtca tgcccattcc cgaggacaag gatgcgttac tcggatggcc 1500 atggcttgag caagtgaacc cgggaatcga ctggaggagc cgaacaatat cattccgcaa 1560 cgatacccag tcgtccacaa tttcctttcg acaatgctta cgacacgctc cagctcgtaa 1620 ggtcggccgt caacgcctca gaaatggtcg ctgtactcgc gaggacgatg ctctccagta 1680 cttttacatg catcatgatt ttgacagtgc acaaggatta actcgtgttg tagcagcaaa 1740 agacctgaag aagctactgc aagaagaaga caacgaattc ggcttcgtga ttcagcatga 1800 tcctgacagc gctaaagcag accggcaatt agctcaagac tgggatgcac ttcgcggaca 1860 ccctgccgaa tcacttctgc taaaatacaa agacgtcgtc ttccgaacgc agcttcctac 1920 agtaccccca acgcgaaacg aggatatcaa agccgaaatc gaactggtgg acgatgaacc 1980 cgtagcgaga aagcagtttc ggctcagcga ggaaatgaag accgcaattc gtgagtggac 2040 aacagaaatg cttcgagctg gcattattcg gcgttcgaaa tcaccctact cagcaccaac 2100 cttttgcgtt aaaaaggcgg tgggctggcg agtagtgcac gactttagag gaatcaactc 2160 taagattcgg ctacccgcga cgccagttcc acgaaaggag gacattttcg actccatgcg 2220 caaaggcaag attttttcgg ccatggacct tttgtgggga ttctttcagg tgcgcttgag 2280 gaaacaggat gtgccctata ccgtattttc gactcctgac ggactattcg aatatttggt 2340 gactcccatg ggcctctcat gtagcccagc agcgttcaat cgtctgaccc agaaagtctt 2400 tgccgaccag agcagctgct gcaaggccta tttcgacgac ttgcttgtct acaccgagac 2460 aaacgatatg gaggatcacc ttgccgccct cgaaaaggtt ctcgagaggt gcaaggagga 2520 gcatcgctac gttcagctgt cgaagtgtac attctgctcc tcggaaattc cttgtctggg 2580 cgacttcatt ggaatccatg gcattcggat ggaccccgac aaggtgagag tgatccagaa 2640 ctggccaaag cctcgcacaa agcgtgaact acagtcgttc ctcggcacgt gtgtatatgt 2700 gctcaagtac tgcccagatt ttgcagaata ttcggcgccg ctcactgagt tgacaaaggg 2760 gaagactcga aacgaacacc tccagttcaa cgagctgcat cacaagtgct ttgaagagct 2820 caagcgcaga ctctctaagc ctcccgttct agctcacccc gactttgacc gaatgttttg 2880 cgtgaaaatg gatgcatctg actttgctat cggtggctac ctgtaccaac tcgacgacga 2940 aggcgacgag agagtcattg cttatggcgg cagaaaactc agcgaagcag aactgaagta 3000 cccaactcgc gaaaaggaac ttctcgcagc tctgttggcg atgcgcactt ggcatgtgta 3060 tctgattgac aagccgttca tgatcagcac ggaccatcgc acgctcgaaa ccatccttca 3120 gcagaagacg tgctctcaac ggctcgcaag atggctcaac gagcttggaa tgtaccaacc 3180 acttttcaaa tggatcaaag gagactccaa cgtagtggct gacttcatct ctcgaaatcc 3240 cggctggaag caggacacga ccgccatttc tctcgctgca ctgttgaagc acatcggggc 3300 agacaatgaa aacaatggcg tctcaaccca cctgtacgca agccagcatc gcggaccatc 3360 ccgcaatata caagaaagat gctcagaatt ataccaaagt gatggttgtt ttggccccat 3420 cgtgaagcaa ctacgagcca aggtcaacag cgaagcagcc ccacctgatg ctgagctaac 3480 caagagcgcg aacattgacc attacgaact acaagactcg ctgctgttct ttcgttcaca 3540 tccttcgcaa tattggcgac tttgtgttcc cgacaatcgt gaacttcgta acctcattct 3600 ttttgaagag cacgattcgg ttgtccgagg acacccgggt tcgttgaaga ctttgaaatt 3660 catgcagcaa aagtattatt ggtcgtcaat ggctcgtgat attcgatcat actgcgctac 3720 gtgcgaaatg tgcatgcgga cgaagacgtc tcgaagcaaa gctcaaggac tcttgcatcc 3780 tttagacgtt ccggaaggtc gatggaaaca cattaccatg gactttgtga cgtcgctccc 3840 agagacgaag ccgcatcgcc acaatgctgt gatggtgatc gtggatcgcc ttacgaaacg 3900 ggctcacttc atcgcgacta aatcaacagc cacagcgcag gacacagcaa aacttttccg 3960 ggacaacttt caacgccttc atggacttcc agtgtctatt gtgtgtgatc gagactcaaa 4020 gtttacctct aagttctgga caaaattgct ggacctgcaa gacaccaagt taaaaccaag 4080 cagcgccttc aaaccctcaa cggacggcca gacagaaatc acaaaccgtt ttcttggcga 4140 tttcttgcgt gcctacgtga acccacacca gaccgattgg aacgaattcc ttgcgttggc 4200 tgaatttgcg tacaattctc gcgtccacgc cagcatcgga atggctccat tcgtcgccga 4260 tttagggtat ttaccacgtt ccgtgagtga cttagtggtt ccacctcgcg acggccctcg 4320 atccgcctct cgattcgtgg acacgcagca aactatcctg accgaatgcc aagacgcgct 4380 agaacaagct caacagcgga tgaagtttta ctatgatcgc aaccgaccaa ccacttcgtt 4440 tcgcatcggc gatcaggtac tgctcgacac ctcaaacttg gctctccacc acgtcggcaa 4500 tgatggaaag cggtcactgg ccccgaagta tatcggacca taccatgttc tcaagataac 4560 gactcccgat acatacaaga ttggccttcc accaggtctc aaactccacg acgagtttca 4620 tttatctcga ctaagacgct acacgccgga cgactctgct actcaagaca accgcgttcc 4680 agccttgatt acacacgatg gaagcctcgg gttgcaggtc aaggaaattc tcaagcatcg 4740 agttcgttgt ggtgccgacg aatattttat tcgttggtac ggcagtgcaa accaggactc 4800 atgggaacct gccgaatcgc tcatccaagt ccgcgggctt atcgacgcat tccatactcg 4860 cgccaaacat cacggcctcg gacacgctct caagcggctc aagcaaccac tacgccgctt 4920 tcctaaggga gggag 4935 // ID DGI_SP repbase; DNA; PLN; 3948 BP. XX AC X03806; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 01-FEB-2007 (Rel. 2.02, Last updated, Version 3) XX DE Fission yeast (S. pombe) dgI repetitive sequence (centromere DE DNA). XX KW Repetitive sequence; centromere; dgI repetitive sequence; SPDGI; KW DGI_SP. XX NM DGI_SP. XX OS Schizosaccharomyces pombe OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; OC Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-3948 RA Nakaseko Y., Adachi Y., Funahashi S., Niwa O. and Yanagida M.; RT "Chromosome walking shows a highly homologous repetitive sequence RT present in all the centromere regions of fission yeast."; RL EMBO J 5(5), 1011-1021 (1986). XX DR GenBank; X03806; Positions 1 3948. XX SQ Sequence 3948 BP; 1295 A; 667 C; 632 G; 1354 T; 0 other; ggatcctatt ctcatcccga atgcttttct tccacggaaa acaaattacc gaatttgtaa 60 actgtgacga ttttttttta tttattcaaa actttgcaaa ttaaactacc accaagtctc 120 ttaataagta aggaagtcgc tattattgga ttagtagacc acatcaccaa aatttcttgc 180 catgacgaca tcacgtgtac tagagcaatt cgggtcatac ttcgtgttca attctgattt 240 gatttctttt ttttcgagta tgattgtcaa caaaaaacga taaagacttt tacatctcca 300 gtcggctgaa ctccagtaat taaagttcga tattgtttaa aaattaaaaa aacaaacaaa 360 caaacaaaaa gatgaaatga tgaaatgatt gatgacgatt ttaaaaaaga tcaaaacttg 420 aaactcatat cacaagaaat ggagacaaca ttcaactata aagtttttca gcgagacatg 480 taccgattga ttcggtcttt gcaggactct tgatgtttgc ctaatcgggt taaattgtgg 540 tggtgtggta atacgtacta gctctcgttt ctttatatcc aactgacggc atcgcttgta 600 cttttttaat aacttctttt tcctcttcgt atggtgtgta aactgaatgg aaacgatgaa 660 cccatcatga acctcacatc atttggttcc gtctatttag tgctcaccca gtgttgcttt 720 atgaaatgaa acaatggttg atgttttcat caatcaccat gaattagttt ggggtaaata 780 tgattctatt attatctctt tctcaaagtg ctaagcgatg atgtacatgt atctatgttt 840 tccaaaatct ttatctcaat ttttgaaaca ggacttttaa tagtctttca tatcagcaat 900 tgtttcagaa aatgttaaca accatcaata tttacacaaa atgatataaa cactgatttt 960 accaagatta ccagcgataa aatgagtaaa ttaagctctt tagaagtctg atggtaattg 1020 ataaatatcg tgtggaaagt ataccgaagt ttggaagaac aagaactttg aaggatgaat 1080 tttccgaaat gtctttggta tttgtaattt tactacatat attttattaa cacattttga 1140 aatttttcaa aaacttattt ccttgtcctt tgtagctcag tcaccattac ttcactaagc 1200 tatttgagaa ttatatgttt attataaata ctcatgaatc tttcccaagc aaacttacct 1260 tgatctaata attctaacca ttcgcatcca tttttattta tttaactttt catttcatat 1320 ctatcttgtt tggtttgtga taaactcttt tttggaaata cattgggttt aaactctgat 1380 ttgtaaattt atttttattt ttattcttat ttattttgtc acatctttat ttgagtgttc 1440 atacgacatt tggaaaaacg gtgcaattga gcaaggctga attacttatt tttacattta 1500 ttgaccactt tcattgaagc taagctatat aatgaatgca acggttatgt gagattgagt 1560 aagaagtgtt atggaataag caaagttaaa tcagtagctt taattttttg ttgtttttaa 1620 ttttaatttg caaacaaaca aacaaaaacg tattcatatc atacacctaa tattcattct 1680 ttttattaaa aaagaaaaaa ataagcacta gtaaacttga ttggttctat ttatttgaat 1740 gaaagtaaac ttcgttattg aaacacgaat aggaatatca gacaacatat acgagtgtca 1800 agaataaaga agagttttta gatttaaagc agttttaaat gaaaaaactc ccataaaatg 1860 attaaatcac attcattgca ataggaaact gtattcggta tatacaatcg gtattgcatg 1920 ttgtaccaag tataatatag tgatgagatt ttgaagtttg tgttctatta ccacatggaa 1980 ctacgtcagg agtggagacc ataatcgttg taagtatgtt gacaaacttt atccaaaggg 2040 taaaaactca gttcttcgag ttataaatcg gaccagagtt gccgcaattg aaacgaatta 2100 gataagtgaa cagggcatgc ttagcaagta caaaccagta taattagaat tgaattaaca 2160 aaggtaaaac ttgaacgttc atgtttgtat actcaaaaga atcaacggag ttgtgaaatt 2220 ttcttagtgg agtttactca ttgatttttt accacttaca cacataagtc ttatacttgc 2280 caagttgaat ggtaccatta gtaccagtac tagtgtcatc tagtgtcagt actagtgtca 2340 tctagtgtca gtactagtgt cagtataggc atcaacatca tcaccagtat cggcgccaca 2400 tcagcacagc accactacca ctaccacttc cacttaccac ttccacttac cacttccatt 2460 actaccacga ctaccactaa ccatcaccac tttcatctcc attcttgtca ttattggctt 2520 gttgtacgtt gttcaaatgt ttcaacgtat gtacatttgt gactacgatt tcttgttagc 2580 gatataaacg aagaggataa agactttgga gtaaataatt ttggccgtgc actagcataa 2640 tgtatttgtg cgtctaggta tcctgcgtct cggtatcctt agcgttgcaa gtggaaagtg 2700 gcttcacact ataaatggtt gacacagcta atacattaga cataaacttt ctcagcattc 2760 acgaacagta aaaatactat tggtaaatga ttcatggata tatagtatta gtatttggca 2820 ttcgtttcgc ttatgaattg tgattgaacc gatatcgtat catcattaaa agtttcctgt 2880 acatcttcta catcattcaa acatgtggaa gaatcataaa tttcacaaaa ataatgtctc 2940 aatcgcatac gtattgtctg ctctgacttg gcttgtcttc tgtatgtgat ccaaatagac 3000 gagaatgtca atccatcatg tacgaccaat cacacttcct atagctgaac cgagtgcaaa 3060 tgcttttgta gcaatcatga tctgtgcctt tccaagttag gggttccaag actcgtcaaa 3120 gtgaattttt cattcttctt catttaaatc tctcgtgtaa atggttatca agatgtgatg 3180 agagaacaag tcaggtggtc gaaaaggatg cttaattaat gtacggtgaa cgtttcatgt 3240 ttattcattg aatcaccttt ccaaagtcta ttattttgtt tttatcaaca ttcgaaaatt 3300 caagggaaag cttaaatctc ttctaagaat acatgcagaa acaagaaaaa tggtttcccg 3360 cccagtggat gcttctgtga atacacaaaa gttttgtatg aaaggttaaa gcggttgttt 3420 ggcactgaat gtaactacca aggaaaaagt aatgctaagc aaatttaatg atgcatatat 3480 aattgggaca attgcaacat ttgcaatgtt ttgccaaagc gaaattgtat ctttcgtttg 3540 cgtataagga atgtgcctcg tcaaattatc atccatccca gctgaacaaa tactgtcaaa 3600 gatttcaaaa aataccgtga agcatttgct ttattaacga tgttactcaa taaaaagata 3660 ttcatttgtg gcataacaag ttctcaattc gattccaagt acatggagag cgtatgttga 3720 aattaataaa tctaaaatgg tgattaagga aggattactg tgcatctttg aaagtcattc 3780 aattccttaa ttaaaaacga ccaatatgct gcggttcacc cttaacatca tgtttttaac 3840 caacgacatc atgggtagta aaataagtaa aaccatattc atattctttc ttaattttct 3900 caattttgat cgtatttcgt ttttttccac aacaccagat attaaaat 3948 // ID PiggyBac-1_PhaTri repbase; DNA; PLN; 2800 BP. XX AC . XX DT 18-MAY-2011 (Rel. 16.05, Created) DT 18-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; KW PiggyBac-1_PhaTri. XX OS Phaeodactylum tricornutum OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum. XX RN [1] RP 1-2800 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 2800 BP; 806 A; 590 C; 675 G; 729 T; 0 other; ctagtgtcta gtctacttct gtcctatatt gaggacccat cctcaataaa ggacattttc 60 caaacctcta gaactataca ttataatcag atctgtttaa aacaaatgct accatcgtgt 120 tccccatgct ctgaaatgtc ttgggagagc atggcatgct ctatttctta acattttaag 180 agcatttgtc gtcaatgcta gggttactca aaatatattt gctttttttt tcgacccgaa 240 ctgagccatt cccgagtcaa tgtagtgtcc attgcatccc tcatagtcaa ccttttatac 300 acaacttaca ccaagctcat tacaaattat gtcagaaggg gattcccgcc gaaagattgg 360 tgctcaggtg acagcgaagg cctgtcatgt tgtccatttg agtgagtgtg ctcggcgata 420 cggtgctttg aggaccacca aggtcgttgt ggggactgtt gtggaggtca acaataccag 480 aaaggcgcca aacaaccgtg tatcaacctt cattactgct gactttgata ttggtggagg 540 atcagtcaag cggagcactc tgaacatccg tagcgtcaaa ctcttcaaac cggaccagtc 600 gacagtacca tccagtcccg cagcaccaat accggcagta gacaacgcag acacagattt 660 ggccgttcca gagcaagagg aaggagaagc ggtcttgcag gagacttctc ctgatgaaga 720 attggaattt ccagcacaac cgatgatgga aattggaata gctgcggggg aacaggtagc 780 aggacctacc gcacaagtag ccacgcaggt ttggggtgtt gaagacgctt cctttgtaat 840 ggctcatgaa acaaagtggt atgctgacga gcaagctaca ttgattgata taaatggcag 900 tgtccaaagt aagcagtttg gcatcaatac accaattggc gaccttcttg gtccagactc 960 tgacattgat ggaaaatatt cgcggctgca atattttctt ctcatgtttc cacccgacca 1020 actgagcgcc atgtgtcagc taacaaatgt gcagcttgcc caacagaaca agcactgcat 1080 gtcaacagga gagctgcttc gattctttgg cattctaatt cttgcgacaa aatttgaatt 1140 tagcagtcga tcgcaattgt ggtccacaac cgcgccgtca aaatacattc ctgcccctgc 1200 attcggaaaa acaggaatgt cgcggcagcg ctttgatgat ctttggcgaa atatccgatg 1260 gagcaaccag tgtcctgaac ggccggaagg tatgagctcc catacgtttc ggtggcaact 1320 tgtcgatgat tttgttgaaa gatacaacaa tcatcgagcc aatactttca aaccatctca 1380 tcttatttgt gtggatgaat caatgtcgcg atggtatgga caaggggggg aatggataaa 1440 tcatggactc cccaattatg tggctattga ccgaaagccc gaaaacggtt gtgagattca 1500 aaatgccgca tgcggctgtt cgggtatcat gcttcgattg aaggttgtaa agggtaagac 1560 agcaacagaa gatgatgggg actacaatga acagttgctg catggaacaa agatcctcaa 1620 agagcttgtc cttccttggt ggtggacgga tcggattgtt tgcgctgact cgtatttttc 1680 atctgtcggt acagctatgg agttgcagcg acatggtttg agatttattg gagttgtaaa 1740 aacagcaaca aaacaatatc cgatgagata cctttcgact ttagagttga accagagagg 1800 cgaacggaga gggcttgtga tgcgagatgt tgatacaaat tatagcactc tgttggcttt 1860 tgtgtggatg gacagggacc gccgatattt tgtgtcgagt gcttccagtc tggatgcagg 1920 caagccctac gtacgctatc gttggagaca gattgaccaa tctccggatg cagatccaga 1980 gaggctggaa attatcattc cacagcccaa agcagcggaa ttatactatt ctgcatgtgg 2040 gatgattgac aggcacaatc gaagtcgtca ggatacactg atgcttgaac gaaagttggg 2100 tacaacaaat tggtcgacaa gggttaacct ctcaatattt ggaatgattg ttgttgacac 2160 ttggttggcc tacagtctgt gtacaggaat aggaagagct aacgggagag aagaaaagca 2220 gaaagacttc tacactgcct tggctgagga gctagtggat aaccaatacg acaatgttgg 2280 aagtcgcaga gttttcgtgg aggcaaattt ggacaatgac agcccagcac tttcaaggac 2340 tacgggagaa ccaagaagtg gcctgtacgc acatctaaca ccaaccaaaa aaagaagaaa 2400 gaacaaagac ggtagtttta gcagcaatag actacaagga cgatgcttgg tgtgttccaa 2460 gaagacaaca tatgtttgct cagtgtgcaa agatgaagaa acacctcact ccagagaacc 2520 gtgggtttgt tataccacca aggggaagct gtgctatgca aaccacatgg ctacctgtca 2580 cggcgcctaa cgaacaatat ggtacaagtt ttatgtatgc atgtcctatt ttaaatagta 2640 aaagtgtgat tcttgatcac catggtcaaa ttccattttt gtgtagaatt ttgtactacc 2700 gctacaggat tactttatgt ttttgcttct tttcttgtcc tatatatagg acaaaatgat 2760 gtcctatatc taggacaacg gccggtagac tagacactag 2800 // ID DNA-3N_PPa repbase; DNA; PLN; 509 BP. XX AC . XX DT 29-DEC-2009 (Rel. 15.07, Created) DT 29-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; DNA-3N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-509 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1014-1014 (2010). XX DR [1] (Consensus) XX CC Elements of this family are ~80% identical to the consensus CC sequence, harboring impefect 14-bp TIR. TSD is unclear. XX SQ Sequence 509 BP; 164 A; 94 C; 75 G; 175 T; 1 other; gaggcacttt atacctagaa gcccactttg aaaggccatg gttcaaaagc cttactaagg 60 tcccttgctt ggtgaagaaa agccctcctt tagaagcctt ggcctttgga tatagtataa 120 agtgagaaga ggccatgaaa tggaccaaat cattctttta ttacaagtct aaatatgtca 180 gttcatatct tgattcaaaa attataagaa gtataaaata atttatttat ttttattttt 240 ttaatggtta ttttaagcat tttttgacat agcttcttga ttttttctaa aaaccacctc 300 tttgagatgg acccaacaaa aattctaaga gacaacacta ttcatgccat gtagaaaaaa 360 atgcattcca ccttcatttt ttcttcttag ggcctttgga cttatttttc taagtataaa 420 gccaacttaa agaggcttct taatttcaac caatcaaaac atttaaaagt tgwggcctct 480 caccttgtct cctaagtata aagtgtccc 509 // ID Copia-6_PIT-I repbase; DNA; PLN; 5175 BP. XX AC AATU01002515; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-6_PIT_; KW Copia-6_PIT-LTR; Copia-6_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5175 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002515; Positions 149766 154940. XX CC Positions [2151-2657] - Integrase core CC 'CCGAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..1357 FT /product="Copia-6_PIT-I_1p" FT /translation="MSPNPTVTSTNQHQDLGVSTPSVGCDRSLSQSQVGEL FT TPLAIPLAVQRSVSDGASQDFRLPGAQLSSQTSYGDRPRSITQPQSRPLNY FT GQPANIYQAHVPAGDVNPACVQEQEEDMPKIEAITKFDVGKKLSQPSEYPT FT WRMRVMAGLGMSRLEQLVQGNEPLRDNMTPAQKNCWGVRRRKAQGLLVSCI FT SDEVLLRYEDIVFRADPILLWDRIFQDFGRGPGVNTDMVMADLYARKLQSD FT ETVEEYIKDLLRMQRILAENNDPMHDSRVARLMLTNAMNVYPKITDDVTRR FT GIQPNEFTIYASRAELVNAEMTARAREQHGTAASGGASSGGRGLSSGRPQL FT QTNFTQRSGNGKQPRQRGGRYGGNRSRSVSSNSSTGSRTSIMARKKNSTWT FT EGTLEGRQRMQRSEPASCWKPGKKPASTSFLWWCIHEHYGWCCAPTTSIRC FT CWFYVR" FT CDS 966..4994 FT /product="Copia-6_PIT-I_2p" FT /translation="MAQLPAAVLLAVEEGYPADGLNYKPTSLSGVETGNSH FT ASEVADTVVTAVAPSQVTRLQARGLPLWLGRKTRRGQKGHWKGDRECKGAN FT QQAAGNQERNQRVQAFSGGVFTNIMGGAAHQQPQSAAAGFTFDEVRHVLGE FT QAARQLRDELETKPPAPAVDEEQFSPTSTPLQSPAEARGGLVSMVMGSHDD FT NCFLDLAPDEMEWLLDSGSQVNLCGDLSCFSYVERGVSGELKMALGQTEIL FT NASGSVVMRVNNQLSGQWEPRRLDDVHYSPNAHVNLISLGYMQACGFVVNI FT SEDQRTAWLTKNEIKLRFDQHDKLYRLRTKRSHRLVAAVEARTNMMGLLHN FT RLGHVNMKTIRELAASKADFGVKINANSLSAYDCVPCITAKLKRMSYKRNP FT ERRKHPLEKLSVDLCSVGDETITGETMFLLVVDEATRYKWCYLLANKNDAE FT DKIKTLILRLNNKFKRQSRSVVTLHSDQGGEFLSGRLKDFCEELGIQSEST FT NSYSPEENAIVERANGLVLPRLRAVLHAASQTDLLWGEALLHVVDTVNLLP FT TAALDGKSSFEALYDKKPTLRYLRTWGCLVHSHIPKERTSTRDKLDPRAEL FT ALFLGYSTNTKGYKLLNLKTGCVIQKRSGNVLCHERFTAAQAYVKQLLLNT FT YKDGNADLPDEIPVVPIVNSLEDRLFPDAGDPLRSSVLPNAGRLDKQTELV FT ASPEQVGEQDVPAQLSMTPSNASKASCLKRSAAQTKTRTASRLVKRKANDN FT EAYTPSKNLPAVATAEPRANIIRRAKKLPAHLKEYIVGSVINSKQDIPIPT FT TYKQAKKSNFWPEWEVAMNDELTSLRQHGTWKLVSRTKAKSQTVITNKWVY FT TVKRDAQGRIKRFKARLVIHGFKQSFGVNYLETYAPVIRFETIRAAILYAR FT KRGWDVYQYDVKTAFLYGRLEERIFMEIPAGSTEGLTGGEMICQLIKSLYG FT LKQAPAVWNKTLHDFLVDLGFTRLDSDYGLYVKYSNDEVDMLLTVYVDDLL FT LMGPAALFTKVAAQLEAKFTLTSMGEAKYLLGIEITLDAINNKVIYSQRSH FT IDKLLKKFGLASSYGCWTPQATTESRAQAKNQDKPVDMPYRELVGGLQYLV FT SGSRPDIAHAVRHLGKYLSCYTESHFREAQRVLRYLLQTRDYALHMDVVLG FT TDVCITAFTDSDYANDPDDSKSVSGYVTLLDGNVISYASRKQGINAQSSTE FT AEYVAMNEGVKDILWIVDLCEELKWPAATPLLRGDNQAALYLTEKPGKHSN FT TKHIRNKYHLIRHMVEDGKLKTLHVPTNDNTADIMTKPLARAKFSQFRDQL FT KVMPISLPSSAATAYAALATNAEECQDGVDE" XX SQ Sequence 5175 BP; 1383 A; 1297 C; 1353 G; 1142 T; 0 other; ggttatgagc ccaaacccta cggtaacatc gaccaatcag caccaagatt tgggggtaag 60 cacaccatcg gttggctgtg acagaagcct gtcacaatct caagttggag aactgacgcc 120 attagcaatc ccgttggctg tccaacgctc cgtcagcgac ggagcctcac aagactttcg 180 gcttcctgga gcgcagctaa gctcgcagac aagctacgga gatcggccgc gttcgatcac 240 tcagcctcag tcgcgtcctc tgaactacgg acaacctgca aacatctacc aagcacacgt 300 acctgctggt gacgtgaatc ctgcctgcgt gcaagaacaa gaagaagaca tgcctaagat 360 cgaagcaatc actaagttcg acgtagggaa gaagctttcc cagccgtcgg aatatccgac 420 gtggcgcatg cgtgttatgg ccggacttgg tatgtctcgc ttggagcagc tggtgcaggg 480 caatgagccg ctgcgcgaca acatgacacc tgcccagaag aattgttggg gagttcgacg 540 tcgcaaagcc caaggactgc tggtgtcgtg catttccgac gaggttctac tacgctacga 600 ggacatcgtg ttcagggcgg atcctatact gctttgggac cgtatattcc aggatttcgg 660 tcgtggacct ggtgttaaca ctgacatggt gatggcggac ctttacgctc ggaagctcca 720 gtcagatgaa actgtggaag aatacattaa ggacttgctc cggatgcagc gcatccttgc 780 tgaaaacaat gatcctatgc atgacagtcg tgtggcaagg ttgatgctca ccaacgccat 840 gaatgtctac cctaagatca ccgacgacgt aacccgccgt ggtattcaac caaatgaatt 900 cactatctat gcgtcacgtg cagaattggt aaacgccgag atgaccgccc gtgcccgcga 960 gcaacatggc acagctgcca gcggcggtgc ttctagcggt ggaagagggc tatccagcgg 1020 acggcctcaa ctacaaacca acttcactca gcggagtgga aacgggaaac agccacgcca 1080 gcgaggtggc agatacggtg gtaaccgcag tcgctccgtc tcaagtaact cgtctacagg 1140 ctcgaggact tccattatgg ctaggaagaa aaactcgacg tggacagaag ggacattgga 1200 agggcgacag agaatgcaaa ggagcgaacc agcaagctgc tggaaaccag gaaagaaacc 1260 agcgagtaca agctttctct ggtggtgtat tcacgaacat tatgggtggt gctgcgcacc 1320 aacaacctca atccgctgct gctggtttta cgttcgatga agttcgtcat gttcttggtg 1380 aacaagcggc aagacagcta cgtgatgagc tggaaacgaa gcctcctgcg cctgcggtgg 1440 atgaagaaca gttctcgcct acctctacac ctttacaatc tcctgctgaa gctcgagggg 1500 gattggttag catggttatg ggcagtcatg atgacaactg ttttctggat ttggcaccgg 1560 atgaaatgga atggctactt gacagcggat cgcaagtaaa tctttgtgga gatctgtcgt 1620 gcttttccta cgttgaacgt ggagtctctg gagaactaaa gatggccctt ggccaaacag 1680 agattttaaa tgcgagcggg agtgtcgtga tgcgcgtaaa caaccagctc tcaggccagt 1740 gggagcctcg gcgccttgat gacgtgcact actcaccgaa tgctcacgtt aacctcataa 1800 gtcttggtta catgcaagcc tgcggctttg tcgtgaatat cagtgaggat cagcgaactg 1860 catggctaac caagaacgag atcaagctgc gatttgatca acatgataag ctctatcgtc 1920 tacgaacgaa gcgttcacac agacttgttg ctgcggtgga agcccgtacc aacatgatgg 1980 gattattgca caaccgctta ggccatgtga acatgaagac aattcgagag ttggcagcca 2040 gcaaggccga cttcggtgtt aagatcaatg cgaattcgct ttctgcctac gactgtgtac 2100 cctgcattac tgctaagctt aagcgcatgt cctacaaacg taatccagaa cgtcgtaaac 2160 acccgctgga gaagctctct gtggatcttt gttccgtcgg cgacgagacg atcacaggtg 2220 aaacgatgtt cttgttggta gtagacgaag ctacgcggta caagtggtgc tatctacttg 2280 caaacaaaaa cgatgcagag gacaagatca agactttgat tctaagactt aacaataagt 2340 tcaagagaca gtcgcgctcg gtggtcacgc tgcattcaga ccaaggaggc gaattcctga 2400 gcggcagact gaaagacttc tgcgaagagc ttggcatcca gagtgagagc accaactctt 2460 attctcctga ggagaatgct atcgtcgagc gagcgaacgg actcgtacta ccgcgactac 2520 gtgctgtgct acatgctgca agtcagaccg atttgttgtg gggagaagct ctcctccatg 2580 tcgtggacac ggtgaacctg ctacctacag ctgcgctgga tggtaagtca tcttttgaag 2640 ctctatacga caagaaacct acgctccggt acctgcgaac ctggggttgc ttggtgcact 2700 cgcacattcc gaaggaaagg acgtctaccc gagacaaact cgacccgcgt gctgagttgg 2760 ctcttttcct cggctactct acaaacacga aaggctacaa gctgttgaat ttgaagaccg 2820 gctgcgtcat tcaaaagcga agtggaaacg tgttgtgtca tgagagattt actgctgctc 2880 aagcctacgt gaagcagcta ctgttgaaca cctacaagga tggtaacgcc gacttacctg 2940 atgagattcc ggtagtgccg atcgtgaact cgcttgaaga ccgtctcttt cccgatgccg 3000 gagatccgct gcgatcgtcc gtattgccga atgctggaag acttgataaa cagaccgagt 3060 tagtagccag tccagagcaa gtgggagagc aagacgtacc cgctcagctg tcgatgacgc 3120 cgtccaacgc ttctaaagca agctgcttga agagatctgc tgcgcagaca aagactagaa 3180 cggcaagccg attagtgaaa cggaaagcaa atgacaacga agcatacaca ccttcaaaga 3240 atctgcctgc agttgctact gcagagccaa gagcaaatat tattcgccgc gcgaagaagc 3300 tgcctgctca cctgaaggag tacatcgttg ggtcagtcat caactcgaag caagatattc 3360 caatccctac cacttacaaa caagccaaaa agagcaactt ctggccggag tgggaagtag 3420 ccatgaatga cgagctgacg tcgctgcgcc agcatgggac ctggaagctt gtatcgagaa 3480 ccaaagccaa gtcgcaaact gtgatcacaa acaaatgggt gtacacggtt aaacgagatg 3540 cccaaggacg aatcaagaga ttcaaggcgc gtcttgtcat tcacggcttt aaacaaagct 3600 ttggtgttaa ctatctggaa acctatgccc cagtgatccg attcgagacc atcagagctg 3660 ctattctcta cgctaggaaa cgtggctggg atgtctacca atacgacgtg aaaactgctt 3720 ttctttacgg tcgattggag gaacgaatct tcatggagat acctgctgga tctactgaag 3780 gattaactgg aggtgaaatg atttgccaac tgatcaagtc actgtatgga ttaaagcaag 3840 ctcctgcagt atggaacaag acgttgcacg actttctggt ggacctcggg ttcacacgac 3900 ttgacagtga ctacggactc tatgtgaaat acagcaacga tgaggtcgac atgctgttga 3960 ccgtctacgt tgacgaccta ctgctaatgg gaccagcggc gctgtttacc aaggttgctg 4020 cgcaactaga agccaaattc acattgacta gcatgggcga ggcaaaatac ctgcttggga 4080 tcgagattac tttggacgct atcaacaaca aggtaatcta cagtcaacga tctcatattg 4140 acaagctgtt aaagaagttt ggactggcta gctcctacgg ctgctggaca cctcaagcga 4200 cgactgaatc cagagctcaa gccaagaacc aagataagcc tgtcgacatg ccttaccgtg 4260 aattggttgg aggattgcag tatcttgtat ccggatcgcg accggatatt gctcacgcag 4320 tccgtcatct tgggaagtat ctgtcatgct acacagagag ccatttccga gaagcccagc 4380 gggtgctgcg ttacctgctg cagacacgag actacgcatt gcacatggat gtagtgctcg 4440 gcacggacgt ctgtattact gcgtttacgg actccgacta cgcgaatgat cctgatgatt 4500 ccaagtcagt ctctggctac gtgaccctac ttgatggaaa cgtcatttcc tacgcttcaa 4560 gaaaacaggg tatcaacgcc cagtcgagca cggaggcgga atacgttgca atgaacgaag 4620 gagtcaagga cattctgtgg atcgtggatt tgtgtgagga actgaagtgg cctgcggcca 4680 caccactgct gcgcggtgat aaccaggcgg cgctgtacct gaccgagaaa cctggaaaac 4740 attcaaacac aaaacacatt cgcaacaagt accaccttat tcgtcacatg gtcgaagacg 4800 gcaaattgaa gacactgcat gtgcccacca acgataacac ggctgacatc atgaccaagc 4860 cacttgcacg tgccaaattc agccagtttc gcgaccagct gaaagtgatg cctatcagcc 4920 tgccctcatc tgctgctact gcttatgcag cactagctac aaacgctgag gaatgccaag 4980 acggtgtgga cgagtaatgg taaacgttgt attactgaag cctcaagcta tgctacaaat 5040 gctgattgct caagctacgg agacctgctg cgatcaggtg cctccggttc ctgttaagat 5100 cctgcgttga tcttacaagt cctgtccgcc ctcgacactt gcgaagcctc gacgcgcgtc 5160 gagtgcgagt gggag 5175 // ID Copia-46_PIT-LTR repbase; DNA; PLN; 255 BP. XX AC AATU01004713; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-46_PIT_; KW Copia-46_PIT-I; Copia-46_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004713; Positions 18486 18740. XX SQ Sequence 255 BP; 81 A; 45 C; 67 G; 62 T; 0 other; tgttaagata ttgggtgagc tgtacgactt agtaagcaca gcacgtacag tcccagaagg 60 agaaaggtgg tcgaagacta aggacggaaa atttagctgt aaggactcaa gagatctggc 120 cacagtttgc cttttgcttt tgagagagaa gcatactcaa gaagaaaccg tagttgcggt 180 cgaggtagta agggaagtaa caagatttta ttcgctttct gctactgtcc agaataccag 240 cgcaattacg taaca 255 // ID MGRL3_I repbase; DNA; PLN; 5841 BP. XX AC AF314096; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Magnaporthe grisea gypsy-type retrotransposon MGRL3_I, internal DE region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; MGRL3_I; gag; internal region; pol; KW internal portion. XX OS Magnaporthe grisea OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Magnaporthales; OC Magnaporthaceae; Magnaporthe. XX RN [1] RP 1-5841 RA Kang S.; RT "Organization and distribution pattern of MGLR-3, a novel RT retrotransposon in the rice blast fungus Magnaporthe grisea."; RL Fungal Genet. Biol 32(1), 11-19 (2001). XX DR Genbank; AF314096; Positions 1372 7212. XX SQ Sequence 5841 BP; 1606 A; 1556 C; 1558 G; 1121 T; 0 other; ataataatat tcacgatacc gaagaaaaaa cacgaacgcc tataaggcac gataccgaaa 60 aagaaacacg aacgcctata aggcacgata ccgaaatggc caagaacgac gccgaacggc 120 agccgaccgc ccagttggga aggcaagagg tcgaatctga ccacggtcgc cccgagacag 180 gtcccccccg cgcagagcgc cagcgtcagc agcctacggt acgaacacgg gcccagcgtc 240 gcccgtcgac ccgggagcgc gtgggaaata ttgtgacggt taggggggag gacgagacca 300 ccgattcccg agaagacacc gacgaacccg ttcggttaga tgattgggac cagcgagttt 360 taccatcaat agatattgat gggccgacac gcaaaaccaa cgaggctcct ctttccgagg 420 aagaacacca gatgatagta gacgaattgg aagatcgcat tgcccatatg caggaccaaa 480 tcgatttact aaacaacacc aagcaagaaa acgaggccac catttcgcgc ctgctccgcg 540 aagcccgttc ccgacgagaa actaccgcga ttagtattgg taccggttcc ggtggttcgc 600 accacaaatc ccgcgtaaag gatcctccga cattctcaaa taaccccgac aaagacgagg 660 ttactttcga ggtttggcac cgccggattg agaacaagtt gttgctcgac ggagcgcatt 720 atcccaccga tgcagataag cgcgcctacg tcgagtcccg tctcggaggt gacgccgccg 780 acaccttgct cccttacctc aacgataccc atcccgatca gatcaccacg tacgacggta 840 taatgggcca tttgcgcgag gaatacaagg ataccaaact cgaggataca gcgcgggacg 900 aattggacaa gctgattatg tcgacgaagg acaagtttat gattttcaag aacaaattcg 960 tcaaactggc aggtcagagc ggccttccga agcgaagctg gaagcgggaa ttgcaccgcc 1020 gcctgcctac caacttgcga gtcgcaatgg ttatatacca ccaggatacc aacgtctcgt 1080 ttgacgccta cgtccgtacg gccgatggca tctcctatga cctcaccaaa gcctacgcct 1140 cgcggaccga agataagaat aagaccaaga ccacctcgat caagaagacc acaggagggt 1200 ctgttattcc acgtgctgga ggaccagccc ggaccaccgg aggcgctgtt gacgagggac 1260 agaagggcaa actgagtgtg gaggagatgc gtggacttat ccggacaggc aaatgtttcc 1320 aatgccgtga accgggccac attagcagga actgccccaa cggtgacacc ggtcgcccca 1380 ccatttccga ggaccgagtt aaccaaatta ttgcaagcta ccatggaaag ggtaccgata 1440 tgtttggaga agacgtcgtc atgtcggaaa actgattgcc ctggggaaat tggactccct 1500 cccagggaag gtgtggccaa ccaccgagat gtgcgaattg agagaaaaaa tcgctgcaaa 1560 gcaaaggctg ctggaagagc cgatacccta cgatttctta cgtagatatc taggcggcga 1620 ccccatgctt atagcggcca gcatttccct aaatggactc aattataaca ctcgtgcctt 1680 gattgacacc ggagcaaatg ggtacgtttt tatcagcaaa caacttgctc ggcgactgta 1740 cacaacgttg aaagccccta agattgtcgg cttccacccc caaaaggttg gaggctatga 1800 cggaaaagcc tcgcaacaga tcgatactgc tgcattggcc acttttgtga tacagggccg 1860 gaggttccgc gaaacgccga tgctggtatt ggatatgcca caagagatga tcgtgggacg 1920 actcttcctg gcggagcacg gaatacttac tgactgtcgt caccgacggc tccaattccc 1980 ggaaagccta ccctcattgg cggtatgtta tcgagatatc gacatgaccc aatcaccaga 2040 tccgaggtct gtgagcccca tacaccagtc ggacgcggat cgtcgagatg cggccctgga 2100 aaagaaagat caatcggcct cccgacagcg aatgatacaa cgacgaatcc aagccttgga 2160 aaaaatgaca gaacgccctc cgtcgatacc ccggagagca aaactgctgg ccaggtcggg 2220 acagacctgg gagatcccca cggcccggga aacttacgcc gatccgaatt tacaggagat 2280 gcaacgggaa ctttacgacc tgccgaggcc aaaggttgaa gtgacaagcc tgagtcatac 2340 ccaaaggaaa gagaccagag aggccgaagg ttcctctcgc atacaaaagg atgccaaagg 2400 aaaatacata ctgaagagag acgcggtggg ttggtacaaa gaccgacagg caagtgtcgc 2460 catgataggc gctatacaac ttatgcgttt ggtgcaggag gattcagccc tctactgcac 2520 ctcgataaac gaaatcgacg atgtcctgcg gcagaagaat gccgagaggc tgctccctga 2580 tgacgacgga gacctgcggg cgatgttgtt ggaaagagtt ccagaacatt accacgacct 2640 gttagacgtg ttcagcaaag tggaatccga tcaggtcccg ccttttcgac cgggatcaga 2700 ccataatata caactcgagg gtgaccccag aacattggga tatagtccac tttacaagat 2760 gacggaggaa gagttggaag cttgcaggaa atatctccaa gagaacctcc agaaaggttt 2820 tatagagcca ggatcgaccc cgtgggccgc ccccatcctg ttcgcacgaa aaggcgatgg 2880 aggactccgg ttttgcgtcg attatcgaaa actgaacgcc cttaccaaaa aagacgtctg 2940 tcctttaccg ttaatcgagg agacactggc ccggatctcc aaggctcgat tcttcaccaa 3000 gatcgacatt aggcaagctt tccaccggat ccgcatgaac ccggaacatc gagattacac 3060 aacctttagg acccgatacg ggaccttccg gtataatgtg ttaccttttg gtctcactaa 3120 cgggccggcc acgttccaga agtttatcaa cgagatcctg atggagtatt tggacgattt 3180 ctgttccgct tatatggacg acattctgat ttggagcgag actgaggagg aacaccagac 3240 tcacgtccgg caagtcctgg aaaggctcaa aaaggctgga ctccaggctg acataaaaaa 3300 gtgcgagttc cacgtcacag aaacacgatt cctgggcttt attataggca ccaagggcgt 3360 cgctgtcgac ccagataagg tagccgccgt gaagcagtgg gcaccaccca ctaccgtgaa 3420 aggagtgcag tccttcctag ggttttgcaa tttttacaga aagtttgtcc cagaatacag 3480 ccgggtagcc aaaccgctaa cgaatttgac gaaaaaagcg gtgccttttc aatgggacga 3540 acattgccgc gtcgctttcg atacactgaa aaaggcgtta acttccgcac ccgtccttgc 3600 ccattaccaa gcggattacg aaacaagggt agagactgat gcgtccggag gagtggtggc 3660 cggagcgttg ctgcagcaga acccaaacac ccaagaatgg catccgatcg cattcttttc 3720 cgaaactatg cagcaggcgg aactcaacta ccccatccac gacaaggaat tgctagcagt 3780 cgttagggcg ctgaaaacct ggagaccaga gctaatgggc accaaaaaga agtttgtggc 3840 gattactgat cataaggcct tggaatactt ttctacgaaa cggttgctca actctcggca 3900 agcggcctgg gccgacttct tttcccaata taattttgag atcacttacc gccctggcag 3960 cgagaacgtg ctggcagatg ctttgacccg caaggcagag gatgtacaaa atcaaaaaga 4020 acgtcaggaa gcagaacgct acatggctat tttccgtcct gtcgacagtg ctggcgacga 4080 cctttatgtg gtcaacccct tttcatattg gcaaactgtt gccgatggcg gtttcggagt 4140 gctgttggca gcgatcgaac caactggcgc agctggacaa ctgctgttcg ctgaagaggt 4200 gctcagggcc aacgagcatt caccactgct agaacagtac cgaattaagg cccgtaaccc 4260 cgaagagaag cactggacgt tgttgcacga caaacacgta ctgtaccgaa ggagattggt 4320 gatcccaggc gacggggaat ggcccgccaa agtgattcgt gaagttcatg ggactattgc 4380 tacggcccat cctggccgca ataagacccg ccgtttggtg gcacagcagt tttggtggcc 4440 aggcatgagc ggaatggtgg accgctatgt cgccaactgc tcctgtcgat cagccaaagt 4500 tccgagggat aagacccctg ggcttttaca accattaccc gtgccggatc gacaatggag 4560 caccatcgtc gtagatttta aatcaatgcc caagtcgaag tcgggaaacg ataacctgtt 4620 tgtaatgatc gatgcgctga cgaaacggtc gtgggccgtt ccatgcacaa ggacggctac 4680 cgcaaaggat gcagccatga tgtactacga gggtccttac cgcatttatg gtttacccac 4740 gaaagtcgtt tccgacagag gtccgcagtt cgtatcagat ttgatcgacg agatgtccaa 4800 gatcttgcag attaagtgga agctttcgac ggccgggcac tcccaaacag cagggcaagc 4860 agagattatg aacgcctaca tcgaccaaag gttgcgccct catattaacc atttccaaga 4920 cgattgggac aaacgtatgc ccgcaatcga tttggtgcag gcaacgctac cccatgactc 4980 tctcggagga ttttcacctt tcgagattgg aaacggctac ccggcccata tgcatttcga 5040 ttggacgcaa aggaccgaac taaagggact gcctacccgt gagcgactta caagaaccga 5100 agctcaagcg attaccaaaa agctcgaaag ctacgtggag gcggcacgca cccacctcca 5160 aatggcgcaa caacgaatgt gcgaccaagc caacaagcac cgccgggaac ccgatttcgg 5220 agtaggaagc gccgtctata ttattaaaaa gcattgggtg acggaccgtc ctagcgataa 5280 actagattac ccgttgacca gatgtagtta tgtgattaag gagaagcggg ggcattccta 5340 ccgtttggag ttgccagact cttggaaggg aagccgcgta tttcatgccg accgtcttcg 5400 gttagaccca cgtgacccat tggacggaca agccgcagaa aggcccgaag gcgaggtaat 5460 cgacgcgtca gaagatacca acgaagagga gtgggaagtc gaacgggtaa tttcctcgcg 5520 ggtgctacga ggtgtgcttc agtaccaagt ccagtggaga ggctgggacc ccgacccgga 5580 gttctacgac gcggaaggat tcaagaacgc ggctgtgcaa ttgcgacagt accataacgc 5640 ctaccccgac aaggccggcc ctcccatgcg cctagaggcc tgggaaaagg ctgccctcca 5700 gaatcggttc gacccgcccg acgagtacga caacgccccg gctacgggga acagcacagc 5760 cagcagattg cgacgtcgcc ggtgaagaca gaacaggaca cagcaagagt cctaaccgct 5820 cgcggggcgg acggggggta a 5841 // ID Gypsy-14_PSo-I repbase; DNA; PLN; 11573 BP. XX AC AAQY01000218; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-14_PSo_; KW Gypsy-14_PSo-LTR; Gypsy-14_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11573 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000218; Positions 19157 7585. XX CC 'AATG' target site duplication CC LTRs are 95% similar to each other. XX FH Key Location/Qualifiers FT CDS 1048..2004 FT /product="Gypsy-14_PSo-I_1p" FT /translation="MDQFLQERSLTSVPKTDPTTAKRRRQIPAYLRTQDVD FT MESVGSHDHPENWEYDPDDVGAVGTRRLAAASTAASTTPLAGTATIQRVRI FT SAISDLKDFTGKDHDEERARAWINKVKSAFTRDQASDEEKCLTFADLLTGP FT ARNWYRQLSRSTRTKWADLAKEFQSQYCRLGVSVAWQYYHARKRGDEPPLE FT YLHRLNVAGMRARVRINDGDSKARREHVEHFIEILGDSEFADQLTLLRLRD FT AEELEVVLRPRERSKSRHKKPAGGSKFRPKPAAMPQPSAPARAVRTMHLPV FT SDSESDTDESGSEGELHRAYVAATRGS" FT CDS 5891..7945 FT /product="Gypsy-14_PSo-I_2p" FT /translation="MTVNEAEYHGLLLCFKLLQGLELRRLIVCGDSNLVIR FT QMRGEIDCKAPSLMLSRQKALECLRKWPTHDLLHVKRAWNASADSLAGAAL FT QREEGRTVETDAEAEDLITLNRLEEVLMPATAGDVVQVDAMHTRSSAGRNA FT KAKVLEEEVVQQLRVERIRQAQEEEAWIQQLKQYLQGNVQAMSQAEAKACS FT LLAADFETDTQGLLYYCAPSARTEADRDGLLRLVVPESLQPDLLHHYHVSL FT EGEHQGISRTYQRIKPHFFWRGMFRSVQQFVGECVDCETGKGRPTIRGRSP FT GNIRATYPFQVIAMDHTPSLPKSKKGNTELLIWVDLFTGYVVAKASGSRTA FT QTIAESYKECVFRRFGASEVIRHDREPGFMSDFFRAFNRILGQRQRATMAY FT RPQSNGTAERMVQTITRAIKMYVQDEDQRDGDEYAERLMFALNTAHDRIRG FT DTPFYLAHGWDPTTTLEATLPVGSTKRRDSNPRRWRYRIQKFYQLARQEVN FT EKLKKAIAERAEARNEQATPHHIKAGSRVSLYLDGVKEGYAKKLAHMWHGP FT FRVLEMVNEYTVRLETAGTEYHLFPVVHIAKRKLMREFPERPRIQLTVDEA FT DRVDFDEALLPEDSWDRELGEDEFEVEQILDVRTGRKTRYGRTLREFQIRW FT KGYEELSWVDEADLNCGALIHDFLTAHAKRNRFQAM" FT CDS 8651..9559 FT /product="Gypsy-14_PSo-I_3p" FT /translation="MRAAVLAARVKRGKPGIGPLQRLRDGERMGGLPDRLQ FT AVALEVHVTIHDTQQLRRNIQIEGVRGGPGGQCLPRLFGIQAFHIDARDQL FT GCIQRSIQSATPPNALRKHPAHAQHLIVDHHTGRGGVMVNTAIRDGSQGST FT SSVETARCCRRPGTKDPSGPKGISISPTTPACAAPSVVADPTVSWPPVPGP FT SPRSAADKDTPVEESSRSTVLVSSSMPPESSTASAFSTTIGAAAEPSEAEE FT TPDLAKLLESRRRKSERKRAWATRSPSSSDSSESEYWARCPCWSRRNHHPP FT RHQPDPRLKQC" XX SQ Sequence 11573 BP; 2761 A; 3124 C; 3663 G; 2025 T; 0 other; atggtgcgcg tgcccggatc tcttggcgac gcgggatttc accgtgagtc ccaagatgat 60 gcgcatgtga gcaacgaatc aggaaatgaa gcgccgacgg agctaggatc accggcggcg 120 tcgctgaaga atggatcctc gaaccaacaa agtgccagga ggatctctac cggcggatcg 180 gaggcggatc gggatgaccc tgatctcgag gagaagcctc taccccctcc acaggtcctc 240 ccgaggaccc ccgcgggtcg cgctgcgaag cacgacccgc cggacgagca cccagcagcg 300 aaagctgttg gatcctcggc caaaaacccc gcgcagacca agggagccat gtctaagaag 360 aagacacgag cagcgcgaaa gaaactaaga gctccggatg cggagccgga agatcgtagc 420 atgaccaagg cgacatggac gcaatccaag ctggaagtgg cctaccggcg gatcgtgctg 480 caagacttcc tacgcgacca ccccgtgatg cagatcttgc agctacaggt accggaagga 540 ctcactggac cgatacaggc cccgtcccta acgatgaaca agctggaggc tgccacaggc 600 ctgctgcgcc tggcgcagga ggcgggtctc gccgtcggtg tctttgaggc gaaagacctc 660 ttcggtttag agctggatac catccgactc gcggcggccg cgctgttcaa caagctgaaa 720 ccgatcgtag gcgagaagga ggcattagaa ccgatccagc ctaattacgc gaagggggcc 780 aaccaccaac gccagagtac catacgggat cttccaccta cgagtcggcc acgtcggaag 840 taggatcgga cagctcgacc gaaccgaagc gcatgccgct gggcccagca ggcaccgagc 900 tgctacggaa ccggtcagca gctgcagcac cacaggcgaa aactacatgg ccggctcggg 960 ccccgacaag cccgacagct aggtcgcccg aggtagcccc cccccgcgca gtcgtcgagt 1020 gcgttggcaa gattcttcca gtcagcgatg gatcaattcc tacaagaacg gagtctcact 1080 tcagtcccaa aaacggaccc aaccacggcg aagcgaagga ggcagatccc agcttaccta 1140 cgaacacagg acgtggacat ggagtcggta ggatctcacg atcatcccga gaactgggag 1200 tatgacccgg acgacgtggg agcagtgggc acccggaggc tagctgcagc ctctacagct 1260 gcatcaacga caccgctagc cggaacagcc acgatccagc gggttaggat ctcggctatc 1320 tcagacctga aggatttcac tgggaaggac cacgacgaag aacgcgcacg agcctggatc 1380 aacaaagtca agtcagcctt cacgagggac caagcgtcgg atgaggagaa gtgcctcacc 1440 ttcgcggatc tcctcacagg cccggccaga aactggtatc gacaactgag ccggtcgacg 1500 cgaacgaaat gggcagactt ggcgaaggaa tttcagtcac agtattgtcg attgggggtg 1560 tcagtagcgt ggcagtacta ccacgcgcgt aagcgcgggg acgaacctcc gctggagtat 1620 ctacatcggt tgaatgtagc gggcatgcgc gcccgcgtta ggatcaacga cggggattcc 1680 aaggctcgtc gcgagcacgt ggagcacttc atcgaaatct taggagactc tgagtttgca 1740 gaccagctga ccctgttacg gttgagggac gcagaagagc tggaggtagt gctacgaccg 1800 cgagagcgat cgaagtctag acacaagaag ccggcaggag gcagcaagtt ccgaccgaag 1860 ccagcagcga tgccgcagcc gtcggcaccc gcgcgagcgg tacgaacaat gcatctacca 1920 gtgtcggaca gtgagtctga cacagacgag tcaggatcgg agggagagct acaccgagca 1980 tacgtggccg cgacaagagg atcgtaatcg gcggagatca cgactatgac tggcgaaagc 2040 gcgacgtcgc ctgtttccgc ctcaccgccc atagaccccg gcgcacaaga tcgccggcct 2100 cgttttccga atgacgggca acgctgctcg cattgcggat cgagaatgca ttcagacctg 2160 ggctgctgga aacgtctcac atgccagaag tgcggcaaga aggggcatcc gtccgactga 2220 tacttcttcg tgtgtcgcgg gtgcggcgag ctccatgatc acggcaagtg tcagatggaa 2280 gaattctaca acttgatccg gcagtggttc gatcccagca aacacccggg acttctgcct 2340 gaagcggcgg aaaaggtgtt aaactagagc gctcgccggg tttgactccg gtacgagacg 2400 agcgttctac gttctgcatc tatgcatttg tggacaagca accgagacac ccaggaacgg 2460 tcgcaagatc ggggccctct gataatatac gtgatcatga aagaaagcgt gttgcctctg 2520 ttgcgagtct gcgtgcaccc gatgaataaa tgaggtcgga agtgcctatg accctggatc 2580 tgatgcctgg agagtcgaga gggtactgga agtattacgt acccggaaaa cacttcaagc 2640 aagccaaggt cagcagcagg atcaacaata ccaaggccgt agtcatgctt gactctggat 2700 ccgaggtgtc gattatcgac accacctttg ctcgtgaggt aggatgttat gtacatacaa 2760 gtcagcgtca agagtgtctc ggcataggag agaagctgta cgtggcgact gggagaacaa 2820 ggattaagct cacgttagtc ggaaacctgg tgtactatta cgacgtgtgg gtgggcgacg 2880 atctgccacc agactatcaa gcaatccagg gcatggattt catggtacca gccgggatcc 2940 gcctagatct cggagacgga tcgatgtgcc taccggacga gatccggatc cagctacatg 3000 gacggcgaca gatcttcagt gaccgggcgc gggcgatgac gattggtcaa tgggtgtcgt 3060 tagcagcggg cgagacggtc gagctaccgc aacgcataca actcgctgac tccgaacaac 3120 tatggctcac aagaggcaag tagtgggtac gtacgttggc cgctggactg gggaagacgc 3180 gatacttgca gatcaccaac attggagaaa cgccggtctg cctacaacac cacgatcagg 3240 tgggcatgtg gttaactggg gatcacgatc ctcgcaaacc gggtttcgtg tccgtcgggt 3300 cgagaaggta taccgagtgg cagaacctgg cgtatagcgc cacgactgac aggcggcccg 3360 atccagcccc agaatcacca gagacggcgg tccctaagtc tgtgtacctg acgcccaaag 3420 cgataatgag tcggccggaa aagattgctg gtggccgact gatcgccacg cgtgtgtctg 3480 cgccgcagtt ggaacagagc ccagccgact cggatcaggc gctaggggcg gaagcggaga 3540 caaggataac cgaaacggga aacaggtagg aagaaaaggc ccctgaggta gccgggacac 3600 aggatacgct aggcccccaa ggccaggaga tcctaaggtc agctgagcag agacaagagg 3660 cgtcgccgaa gaaatcaggg accgcgcccg cggacgtgga tcgggaggat gggtcgaccg 3720 cgactcacct tgaagatgcg gagctcatcc ccatggccgc gagatgtgca gaagaacaac 3780 cagcctctat ccaagtcggc ggatccctac taccgtcttg ccatcagcca gagccaatag 3840 acaaaaaggc gcaggtacac atggcgacgc ggcggaagac ccggaggctc atgccgaaga 3900 agatgccccc gccgaggcgc cggcggagca gcagggaacg acccaaggat caagcgacaa 3960 ctcgaagacg gagccagcgg atgcggagat tgaaagtcag actccccaga ggagacgtac 4020 gagcgcaggg cgagtgcttt gtacgcagag gactacgagg gaaagctggc ggtgctgccc 4080 gaagtgacgg tcactacggc agaggtcaag gtggaagatc tgcatgtagg cgacgctgaa 4140 gcgaactccc cagaagagat ccaaaacctc atcgatgaga tctgggcgta caagcatctc 4200 ctcatcgaca aagggaacgc tctacctccg gccgccgtcg gcgcagtctg cgatatcgac 4260 gttggagatg cgaagccggt cacacagcgt gtgcgcaagg tcgccccgca atatcgggaa 4320 aagctcgcgg atctgctcaa ggggctgctc tcggccaaga ttctcagccc ctttacgtct 4380 ccatgggcat cccctattgt ggtcatcatc aagaagaacg gagtagatat tcgcctctgc 4440 atcgactatc ggttggtgaa catcctaacg aggttgatga tctaccccat gcctctgatc 4500 gacgacctgt tggaggatct cgacgcgacg ctgtggtact gctcgttaga tatggcgagc 4560 gggttttggg tggtgtcgat gactgagcgt gcgcgggcaa tttcagcctt catcaccccg 4620 tctggccttt acgagtggaa caggatgcca ttcggattga agaacgcgcc ccagatctac 4680 caaagattga tcgacaacgc attgtatggt ttcctccgga tcccgccagc ttcgaaagga 4740 gaagatctcg tcgatctctt cagagagggc gagcctaatg atgggggaga gccgtctgcg 4800 ctggtacatt gatgacatct tggtgacagc tacgtcgtgg gatcacctgt gtgaacgagt 4860 gcggaaacgg ctggaagcgt gcaacgagtg gaacctaccg atcagtgtag ccaagagttt 4920 ttggggcctc aagaaggtgg attacctcgg tcaccgagtg tccgctgggg gcctggaggc 4980 acaaccgaag gatctgcaag ctctaaccga tctgccgttc ccgaagtccc tccgagcaac 5040 gcagtcgttc cttggaagct tgaattacta cggccgcttc atcgagaacc tggctgtata 5100 tgcggcgata ctgtacgagc tacgagaggt cgacttcgca gagctgaggc agcggtcaac 5160 ggaggagcaa cccaacaacg acgatgttaa gaaggaggat cgtagtacga agtgaagcag 5220 agccgagaca gccttcgccg cactgaaggg caagatagcg gccacgtcga tcctgcgcca 5280 tttcgatgcg gaaagggagc cggtagtgat cgtctatgca agcgagtggg cgatcgccgc 5340 gtcacttatg caagaacacg acggcgtata catgccggtg atgttcgtca gccggacatt 5400 gaagcagaac gagctgaagt atggcatcgc ggagaaggaa gtattgacga tcctaaggat 5460 gttggatctc ggctattcga tgctggtggg aagacggatc cgggtgttaa ctcgccactc 5520 cacgctggcc tggttgttca ggtcgacggg gctgcaaggc agcctgagcc aatgggctac 5580 gttgttgtcg acatggatga tcgaaattga gcgatgcgcc aagggcgagg acgagatcct 5640 aggggcgcta gcagcttgca tcacccctag agagaagatg gatgaggcac tagcagcaat 5700 cgcccccagg aaggaaccac ggaaggtgat atccatgcca gtccctacag tggagcttga 5760 ggaagagtta tgggtggcaa gtttcgatgg atccgccaga gtgaaaaggg gtgggggagc 5820 cttcagtgcg atcgtgtgaa agttgcccga gtggacggta gtcgccgcag catcgagata 5880 tgcggccgac atgaccgtga atgaggcgga atatcatgga ctgctactct gcttcaaatt 5940 gctacaaggg ctagagctgc gacgtctgat agtatgcggt gactccaacc tggtgatccg 6000 tcagatgcgt ggggagattg actgcaaagc gccgagtctc atgctttcga ggcagaaggc 6060 actagaatgt ctgcgcaagt ggccgaccca cgacctgtta cacgtgaaga gagcatggaa 6120 cgcgagtgcg gacagtttgg ccggcgccgc tctacaacgg gaagaaggga gaactgtgga 6180 gacagacgcg gaagcggaag acttgatcac gctgaaccga ctggaggaag tgctgatgcc 6240 ggctacagcg ggtgacgtgg tccaagttga tgctatgcac actcgatcca gtgccggaag 6300 gaatgcgaag gcgaaggtgt tggaagagga agtggtgcaa cagttacgtg tagaacggat 6360 ccgccaggcc caggaagaag aggcatggat ccagcagctg aagcaatact tacaagggaa 6420 tgtacaggca atgtcgcagg cggaggcaaa ggcttgcagc ctgttagcgg cagacttcga 6480 aacggatacc caagggctgc tgtactattg cgcgccgtcg gcaagaacag aggcggaccg 6540 ggacggcctg cttcgactag tcgtgccgga atctctacaa cctgacctac tccaccacta 6600 ccatgtgagc ctggaagggg agcaccaagg gatcagtcgg acctatcaac ggatcaaacc 6660 tcacttcttc tggaggggga tgtttaggtc ggtgcagcag tttgtcggtg aatgtgtcga 6720 ctgcgagaca ggcaaggggc gaccgacgat ccgaggaagg tccccaggga acatccgagc 6780 gacgtatccg ttccaggtga tcgcgatgga tcataccccg tcgctcccga agtcaaagaa 6840 gggcaacacc gaactactca tctgggtgga tctgttcaca ggctatgtgg tggcgaaggc 6900 cagtggatcg cgtactgcgc agacgattgc tgagtcttac aaggagtgtg ttttccgccg 6960 cttcggtgcg agcgaggtga tccgtcacga tcgtgagccc gggtttatgt cggatttctt 7020 tcgcgccttc aaccgcatct taggtcagcg ccagcgggcc actatggcct accggccaca 7080 atcaaatgga accgcggagc gaatggtgca gactatcacg agggctatca agatgtatgt 7140 ccaagatgaa gatcagcgcg acggggatga gtacgcggaa cggctaatgt tcgcactgaa 7200 cacggctcat gaccggatca ggggcgatac gcctttttat ctagcgcatg gttgggatcc 7260 tacgactact ttggaagcaa cgttgcccgt aggcagcacc aagagacgag actcgaatcc 7320 ccgccgctgg cggtacagga tccagaagtt ctaccaactt gccaggcaag aggtgaacga 7380 gaagttgaag aaggcaatcg ctgaaagggc ggaagcgcga aacgagcagg ctacacccca 7440 ccatattaaa gctggatcac gcgtatcgct ctatctggat ggagtgaagg agggctatgc 7500 caagaagctc gcgcacatgt ggcacgggcc tttccgagtg ctagagatgg tgaacgagta 7560 tacggtgcgg ttggaaactg cagggactga gtaccacctc tttccggtgg tacatattgc 7620 caaacggaag ctgatgagag agtttcccga acgcccgcgg atccagttaa ctgttgacga 7680 ggccgatcga gtagacttcg atgaagccct gctgccagaa gacagctggg atcgagagct 7740 gggagaagac gagtttgaag tggagcagat cttggacgtg aggactggac gaaagacgcg 7800 ctatggacgt acgttgcgcg aatttcagat caggtggaaa ggatacgaag agctctcgtg 7860 ggtggatgag gcggacttga actgcggcgc gctgatccac gactttctga ccgcccatgc 7920 gaaacggaat cgattccaag ccatgtagtc acacgaggaa gagtgacgga ggcagccacg 7980 caggtgggct gggcaccgac gtgaagatca aagtgaagga tctgcaggac ggctgcagca 8040 tcaaggagga agggcgctct cagacgggca ggccgtcatg agataaaact agcggagaaa 8100 gatgggcagg gaggctgcat ttctgtggaa gacttggggt acatgtatat gtgatgaaca 8160 agtgaacgga atgacgactg atgaaatgga tctggattgt ggacgaaaag atgaggagga 8220 ctgcgagtga tgaaactgaa gttgaattaa gacatgcagt caaaacgact agccacctta 8280 caccgctacc aaacacgctt gaactagacg ccagagggag aagtcccgcg gaatcgctgc 8340 accaccacta ggcacgagag aattttaggc gaaggcggtc aatgcggagt gcagggtgcg 8400 agccggcaga ggtgcggaag tggttacgcc atgggtcagc gcggtcgcag tcggccagag 8460 cgtccaccag atctgcgggt gccgcacgcc ccgctgcaat ggcctctcca ccagtgaacc 8520 acgtggtgtc ctcactctgc tgggggaagc gggcgaacat gggatccagc caaagatcca 8580 gatcgcaaca accggtacgc cgagccttct cgaagccctg ctcctgccga tcccggtact 8640 tctcccggac atgagagctg cggttcttgc ggctcgtgta aaacgaggca aaccagggat 8700 cggacctctt caacgccttc gggatgggga aaggatgggt ggactcccag atcgcctgca 8760 agcagtcgct ctcgaagtcc atgtaaccat ccacgatact cagcagctga ggcgaaacat 8820 ccaaatcgaa ggtgtgaggg gcgggcctgg tggacaatgc ctgccgaggc tcttcggcat 8880 acaagccttc cacattgacg cgcgagatca actcgggtgt atacagcgct cgatccagag 8940 tgccaccccg cccaacgcgc tcaggaaaca tccagcccac gctcagcact tgatagtcga 9000 tcaccacacg gggcgtggcg gtgtcatggt taacacggcg atccgagacg gctcccaagg 9060 gtcgacctcc tctgtagaaa ccgcacgttg ctgccggaga ccaggcacaa aggatccgag 9120 tggcccgaaa ggaataagca tatcaccaac aaccccagcg tgtgcggccc catcagtcgt 9180 agcagatccc accgtgagct ggcccccagt cccaggaccc tcaccgcgca gcgctgcaga 9240 taaggatact cctgtggagg aatcgtcgag atccactgtg ctggtatctt catcaatgcc 9300 gcctgaaagt tccacggcgt ctgcattctc cacgacgatc ggagcggccg cagaaccctc 9360 agaagccgag gaaacaccgg atctggccaa actcttagag tcgcgacggc ggaagtcgga 9420 gcggaaacga gcctgggcta cgcgcagccc gtcgtcgtca gactcgtcgg agtcagagta 9480 ttgggctcgg tgcccgtgtt ggagcaggcg taatcatcat ccacctcgtc accagccgga 9540 tccacggctg aaacaatgtt agacaaggtg gcccccgcag gcgtcacctc gatcacatgg 9600 tagaagcggc ggggagccga cccgccagcg acgacacacg acgaacacgc ttcgcggccg 9660 gagcggccac gagaccaggc tcgatggcgg gcagacgggc tcgcttggag gaagaaggaa 9720 cgcaggcggt tggagacgga acactcggga cttggacccc agcgacgcga ggaggtacca 9780 acacggccaa agccgccacc tgcgcgatac gctccagcgc ggaggtgtga tcctccgaca 9840 aggtatggta gatctccccc aggtcaccat gttcggcttc cagagagccg aagtccacct 9900 ccaggccgtc gaagtcgcgg caaggtggcc gtacgcttgc tggatgtcgg cgatctgcac 9960 aagcagctcc ctgcagccac gcacacagga agcgtgagcg ggatcggccg gatctggggc 10020 ggaagaagta gtggcaggcg gaggagtcga cgcagggggc cgggcagggg taagcgcctc 10080 gcgcgaggcc ctcagctcgc cctggaggac ctgtttctct gcctgcagac tgttcggagc 10140 ggctatgctc acacgcaact cctcacgaag agcgtccctc tcgctgcgga ggtgtgcgaa 10200 ggtgtcgatc cgcgcgttgg cctgtgtgag ccgctcctgg gaccgacgga aattggtggc 10260 gacggtctgg tactcgcgag catgctgatc ccgctcgcgc cgaagctggt ccaactgccc 10320 ctctacgtcg tggacccgct ccagcgtagc cgcattctgg cgatgtgact cctggaccgc 10380 agcttgctgg cggtccgccg cggcattggc ccgttccaca gctccgttcg cacgctcagc 10440 acggcggttg gcgtcgtcga agtcttgctg tagccggtca cgatgggcag agatgcgatc 10500 aagcaaaccc tccagctcgc ggatccgctc gccgcggacg tgaatctcga gatggagtcc 10560 gtggacggcc gaatccccac ccgaaatcgt gcgtaggtcc tcccgaagct gctggttgga 10620 ctcctccact ctctgggcat gcgtcaacag atccccgaga cgagacttga gtgcgtcgca 10680 ctgggaacgg gattcggcga gatcggcgac ggttgaagct tgggcagctt gagcggagcg 10740 aattgggttg tggtgatcag cagcgtggcg cgcaagatcc gcgttctcgc gacgaacttc 10800 actcaggtct cgagcgatct ggaggacgga tcgatccaac tcgccatcca tcaagcggcc 10860 ctcaatccgt cgctctagct gagcagcgta atgttgaagg cggtcgtaag cttcggttga 10920 cgtctctcgg agcagctcat gctcgatccg gagaacctta actggtgcag ctggtccttc 10980 atgcgatcca ccgaagcaat ggcatcggca gcccggaagt tcgcgtcgtc taacttggct 11040 tggctggcgt tgtacttgcg ttggacgaag gtcacgaagc ggtctgcgac ctctcgcatg 11100 gcggtgggtg cggcgtgaag ctgtccgttg tgctggcggg caagggtata cgcgtggcgc 11160 agctcgtcaa aggcctccag caccgtgtaa tagtggttgg atacggctaa taacgcagcc 11220 ggcgtgacct cagtcgggtc gagcgacagc gcgagaggcg tgacggacaa catggggtca 11280 gaaggcgcgg agtcgcagat aacacatggg ggcggggggt ccgaagagcg accgtatccg 11340 acggtgacag ccacacgtgt ccccggtgca ggagggtctg cctcatacgg ggcttcgggc 11400 acgtcaggac atccagtcgc aggacggcag tggcgtgtct gagccatggt gaagaagaat 11460 ggtggcagaa agcggttgtg ccagaactgc gggaaatctt caattaatga tgcggatcaa 11520 aggtggcacg aggtgatgcc gttgtgcagc agcgacctcg tcccaggggc gaa 11573 // ID Ginger-1_Chlorella_NC64A repbase; DNA; PLN; 3754 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Ginger2/TDD; DNA transposon; Transposable Element; KW Ginger-1_Chlorella_NC64A. XX OS Chlorella variabilis OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Chlorellales; Chlorellaceae; Chlorella. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3754 BP; 703 A; 1130 C; 1284 G; 621 T; 16 other; tgttgcccgc tgatgtggca cctcccccga ttcgtctggc tcatcaggca cgctctctcc 60 cgcgatccct ccctttcctt cgcctttcag agtctctaag gcttctattt ctcccctccc 120 gcaccccgca gctgccgcaa atttaaaatt atgaaccaac ctgtcatcct ttatgcctta 180 gaacggcgcc aaaacggcgc caagaatgtg tttctcacta agtcagatgt agagggcatc 240 atccggatca agcagggcga ccagcaggcg ccctcaggcc ggcggcggcg gggtgcggga 300 gggggggcgg cagtgcaggg cggcgccaag aactacagca agaaggtgct gcagttcttc 360 caggtgctga agggcgctgg cggtcaggac atcctgtgcc gctgcgtcaa gcgcagcgga 420 gagtggcggt ggtgccccgt ggtgccgctc gaggagctgc cccgagtgat caaggagcac 480 cacgagcggg cgactggctt cagcggtgtg gagaagctgt acacacatgt gagtgataca 540 aggggtgcaa tgctgccgcc agaccaactg gagagtgctc tgcatcaggc agcaaccgga 600 tgcatcgcag caagcacggg gggtgcggca cggccaaggt ggcgctgccc tcctctccat 660 ctatccctcc ttccctccct cacgccgcgc actcccctgg tcctcctttg ctgctctgct 720 gcctttcctg cagctggcct acaacgcacc caccgagctg gcagctggtg ctgacggcaa 780 ggtgcccttc ctctacggcc tggaggggtt tgaccgtgcc gtgatcagca tcttcatctt 840 gggctgcccc gtgcgtgccg accaagcacc actgaagcct gccgagcagc ctgccccgca 900 ccccatcgtg gtggaccgtg cgttccagca gtgccaggtg cgcatgctgg tgacagcaat 960 tgtgtggctc agctggagca gccattttgc ttttacttag ggctgctgct caccgaccca 1020 cagcaaacct gcccgccatg ctgagttcca tgcgagattc cccccgttac catgccgccc 1080 ctctccccat ccacatccct gtgagaaggt ggacctgatc gacctgggcg agggccgcga 1140 ccccaagtac cgctacatca tgagctatgt ggacctcttc acccgccacg tgtggctccg 1200 tgcgctggcc tccaaaaggc cgcatggggt tgcccgccag gtgagcgcct ggcaatctgc 1260 tgctggattg ttgcagtatc agaaaagcgt gggaggcaag ggcaggaaat gagggtagct 1320 aatcgctgcc ctgcccgtgg tgcattgcag cagtgcccct ttgccttcct tgctgccacg 1380 tgctgccatg ctggctgtga ccatcggaat cctcactgtt tgtcctgtcc attcacctgc 1440 agctctttaa aatctggatg gacacccagg cgccagccag gctgcagtct gacaatggca 1500 aggagtttgt cgccggcatc atcctggagc tgtgccaagc gtttggcgtg accgccatca 1560 atggggccat cggcaagccg caaagccagg gctgcgtgga gcgcagcaac cgcaccgtca 1620 aggacaagat ctctgctcag ctgcagatgg ctcccaccat tgcctggcgc taccaggtac 1680 agcttgcctg catgccaggc ggagccagcc ccagcatact gactgcctgc tgttgctgct 1740 gctgcctgct gctgtttggc ggtgctgtgt tgcataacga ccaccatatc tgctgctctg 1800 ccttctaagg ctgttcattg tcctgttgtt caggtgcggc gcgtgcaagg gatgatcaac 1860 cacgagcccg ctgcagcgct gggccgcaag atgacccgct cgcaagcgcn gnnnggcgag 1920 cccagccagc gcgngcngca agcacccgcc gagnncanng cccggnngcn gggcanngcc 1980 aggtatgcag cagcagcggg aaacagatcc ctggggcagc aggagggcgg ttggggcagg 2040 acgtggcagc agtacagggc gaggctgccg ccgcattgca cacagccttt ggnttgctgc 2100 gcctgtgtcc agccacctgc ctgctcttct gccccatgct gcagcgacga ggagatggac 2160 atggagcagg gcgtggacga cagccccgca gtgccaacca cccgcacagc tgcacgccgc 2220 cccacagcct gggcgcccat caccggccgc aagcgcagcg ctgtggaggc agagctggcc 2280 gatgaagcgg aggtggcagc tgctgcggcg gccatggatg agggggaggc tcctgctcgg 2340 cgcagcagcc agcgggcagc cgctgcgggc ctgatcgccg tactggccat ggagcacgag 2400 ctggaggatg cggaggaggt gctgcccatg cggcagctgc cacagcgcac cgctgccact 2460 agcagccctg ctggccagcg ccgcaaccgc atagcagtgc tggcagcggc ggctgcggca 2520 gcagcttcgg aggcagggga ggagcaggca gcagcagagg cggaggagga ggcagcagca 2580 gaggcggagg aggagcaggc agcaacagag gcggaggagg aggaggcagc aacagaggcg 2640 gaggaggagg aggcagtagc agaggcggag gaggagcagg cagcagcaga ggcggaggag 2700 gagcaggcag caacagaggc ggaggaggag gaggcagcaa cagaggcgga ggaggaggag 2760 gcagcagcag aggcggagga ggagcaggca gcagcagagg cggaggagga gcaggcagca 2820 gcagaggcgg aggaggagca ggcagcagca gaggcggagg agggcggcac gctggcagca 2880 ccacacccgc ccatgccagc acacttgcag gccacccgct ctcgagtggc ggcggctcag 2940 gtgaagaacc gccagcggat cgcagcgcag cgcaggccaa agggcgagcc caaggacttt 3000 gctgtgggcg atgacgtgct gctgctgccg ccgaagcgcg gcaaagtggg caagcagctg 3060 ggccgcaacc gcatcgtgtg ccgcgtggtg gagatcaagc ggccctttgg cgtgaccatg 3120 taccggctgc ggagcggagc tggagtggtg gagggtatgc atcaggccag caggctatct 3180 aaggcgccac ccagcctggc cagcgagctg accttcagcg gcacggcgca gcgaggagtg 3240 cctgtggtgt ctctcaatgt ggcgatggcg gcgcagcccg gcggcggcaa ggcagccgtg 3300 cgctgcggct gccgcggcgc ctgcacccgg aactgcagct gcaagaagaa tggtgcgcgg 3360 tgtgggcggc actgtggctg tataaccggt aagggtggca attgcaagaa ccattgaaga 3420 agtgtgcctt gtacgctttg ccgtctccgc tgaaaggtgc tgccgcctgt ggcggcttca 3480 tatttcctgt tcatttctgt tgttcggtct ctctgttcgt gttggttggc ttgtaagagt 3540 tgtatttctg acgctagaga ggtgagatga cagcgggagc gttgaagcgt gcatgccatc 3600 acgtgtgcaa gcagccccgc tccgccccgc tcaaccctca aacatggctc tatggggtca 3660 gttcacgtat gggaggggag cgccgcgcgg gctgccagga gcgagcgggg gcgggggttg 3720 cccaatcggg agggtgccac atcagggggc aaca 3754 // ID Gypsy-4_SMo-LTR repbase; DNA; PLN; 187 BP. XX AC ADFJ01000686; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_SMo_; KW Gypsy-4_SMo-I; Gypsy-4_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-187 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01000686; Positions 10766 10580. XX SQ Sequence 187 BP; 42 A; 42 C; 58 G; 45 T; 0 other; tgttagggcg tggccaccaa gagagtgaga gagagggagg gaatattctg gtcctcagaa 60 tattccccat cttccttgta taaaaccctt gcctcacaag ggcgaggggg ggcattttgt 120 ggagagcagt gaagcatttt tcgtgtttga gcgagcgttg ggggaagcgc ccctccttcc 180 tccaaca 187 // ID Copia-36_PIT-I repbase; DNA; PLN; 6644 BP. XX AC AATU01000692; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-36_PIT_; KW Copia-36_PIT-LTR; Copia-36_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6644 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000692; Positions 255234 261877. XX CC Positions [3423-3950] - Integrase core CC 'AAACC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1236..4310 FT /product="Copia-36_PIT-I_1p" FT /translation="MELKPELVERLKKKKAKKQAVSLINSVRRVHTMPTTS FT ETRRLFENLALRSPHTSEGATGASREKRSVSPIYSPPSCASDDDKTEERKA FT EPADDVSVPMTPQQLQLQSSQSTQLTQVEQPSQAVQGVQPIQGMQLTQVEQ FT TTQAVQGNQPSQSIQSAQAMQTVQSTQPSLSMQPVQTMQAMQPMQLLQPMA FT STQHEVGSSYGWQIPTIDAAQHQWGGGHFLRPLPTWDALFYSLGQGFSSGL FT QRPTLEPGHRGGPQVISSVPGDNYEGRYAEPQGYQGLEGRLYDGGSYGGLR FT GSHGPSFGGLFEGEWPGLREARTNQPVDYGRGYTSLFGGGDWRLPPRENVG FT PPRSSLPCYSPMRGPPGPRYQGRSPDRGRSPYRGRSPDRRYSPIRGRSPPR FT GNLRPSGSPPRWRSPPRRRAGQRYSLPRGRSPLRGPQSRGMSSPRGQPRRD FT GPVQRRRGERSRSPRRNQMSHYGPQSEEGRQGSNSTQGNETGPRSGPTQGT FT ETSQGQGTASQGQTFSVNAVGRDENMQSVERNFPEWILDSGSQANICGDLS FT LFTTLREDKTSRLDFANGTTEHTTVSGSVLLRVINQATGELEDRLLDDVVY FT TPNAKVNLISMGYLQTTGNYKLMCSMDQKTAWMSKPGTILKFEMRDNLYRL FT RSEKATGVMVMTMAKQAVEDKKTMELLHQRFGHLHMALLQVMADKMDLGVK FT LNTKDLNTYECIACVVSKTKSMSHKRLPARSTKPLETLAMDICTMNVETAS FT KATMFMFIVDVATRYKWAYLLEKKSQATWFILKLLKKLRTHHKDYRVLHLR FT SDQGGEFAGAELHEYCVEHGTVQQFTNAYSHQENGIAERANGIVLPRVRAM FT LTATHLPNMLWGEALLHMVTTLNMLPTKMLGMTSSHEKLYGRKPPLSMLRT FT WGCIAHVRVPPESRQRKEKLEPRAQMCLLLGYSDSTKGYKFLDLLTCQVKT FT AQRENCRFHEEFTVDGAYVKQLLENAYLDTLHVLPEKLPVVRIKTSIETYT FT TESSGTVPMSKAGELLEVE" XX SQ Sequence 6644 BP; 1824 A; 1573 C; 1858 G; 1389 T; 0 other; ggttatgagc ccaattaggg tccatggctc gacaacggac gcacctggtg tggaagatca 60 aaacgctggc ggagttttgg cgaatgggag tcgaggagtg cgccgattgg ctgataatgt 120 ggctgatgta gctactggac gtgacgatga tgttctgtca cacgaagaag ccgaacacct 180 tatccggaat tcaaggtggt cgatcattgg tagaaaatct ccttgaaaga ttgcgaactc 240 gcaactttcc agttagaaat cagccaccac cgccacaaag caatccaagt gacggcagtg 300 accccagcac agggcacagc gaagcccaga gcagcctacc aagcatgctg gacaaccaga 360 accccggcgg gcgctacgac gacgcagagc tcgcagagca cacgaagtcg ctgcgcaaca 420 cggccgattt tcggctgccc ccgttatcaa agaaggaaga atacacggcg tgggttagtg 480 aggtgctgtt gcactttgag agccgcctgc tgggtgagat tacctatggt gcccagagat 540 ttgactccgt ggagggctac aagaggccta agtatgctga gtggtacaag gcaaggaagg 600 tgaaggcttt ctcagcccta gcattgtcac tctcggtgga tctacgaaca gcattcaaga 660 tcaactccat ccgtgatcag atggatgccc cgtcactact ttggcaacga attactgagc 720 attttgaggc gggtgacggc gttaaccctg attacccggc gcgagctgat gaaccgtcag 780 ctgcagccca aggaagctgt gactaagtat gtgcaagaca ttgatgctat ggtacgccga 840 ctacgactag cgaagggcga gtttgaagag tgggaacatg caagtctact tatctcgaac 900 acgctgttga tgtttcctga gctggcacga gagcactcac tctggatgag caagcatgat 960 cgtcggacca tgacacttgc tgaagcgcta cagcgcctgc gcactgcgga acactcaagc 1020 aaccagttgc aacagcagat gtcactagcg gcgccaagga caacgcagtc aaacacgaac 1080 caagtgaata atgtgagcca acatgcaaga caaggacatg caggcaagcg tcagaggcag 1140 cgcaagggca agaatgctga aaagaaacag cgctatacct gtgctaactg tgaccagcat 1200 ggccattggt acgcagatgt actgcaaaca ctggcatgga actgaagcct gagttggtcg 1260 aacgactgaa gaagaagaag gccaagaagc aggcagtctc actgattaac tccgtgcgcc 1320 gcgtgcatac gatgccaacg actagtgaaa cgcgtcgcct gtttgagaac ttggcgctga 1380 gatcgccgca cacaagtgaa ggtgcgactg gtgcaagccg tgagaaacgc tcggtatcac 1440 ctatctattc tccgccatca tgtgcaagcg atgacgataa gacggaggaa cgcaaagccg 1500 aaccggcgga tgatgtgagt gtaccgatga cgccacagca attgcaactt caatccagtc 1560 aaagcacgca acttacccaa gttgagcaac cttctcaggc tgtgcaaggt gttcaaccta 1620 ttcaaggcat gcaacttact caagttgagc aaactactca agctgtgcaa ggcaatcaac 1680 ccagtcagag tatccagtct gctcaagcca tgcaaactgt gcaaagtacc caacctagcc 1740 tgagtatgca acctgttcaa acaatgcaag ccatgcagcc gatgcaacta ttgcaaccta 1800 tggcgagtac tcagcatgag gtcggatcat cgtatggatg gcagataccg actatagatg 1860 ctgcgcagca ccagtggggg ggtggacatt tcctaagacc acttccgacg tgggatgcac 1920 tgttctactc cttaggccag ggattttcga gtggattgca gagacccacg ttagagccag 1980 gccatagagg tggaccacaa gtgatttcat ctgtgccagg ggataactac gaaggtcgtt 2040 atgctgagcc acaaggatat caaggccttg aaggacgcct gtacgatgga ggatcgtatg 2100 gtggactgag aggatcgcat ggaccatctt ttggaggact gtttgaaggt gagtggcctg 2160 gactaagaga agcacgtacc aatcaacccg ttgactatgg gcgaggctac acatctcttt 2220 ttggaggagg agactggaga ctgccacctc gggagaatgt tggacctcca agatcgtcgc 2280 taccgtgcta ctcaccgatg agaggtccac ctgggccgcg ctaccaagga cgttcgccag 2340 atcgtggacg ctcaccatat cgtggacgct cacccgatcg tagatattcg ccaattcgtg 2400 gacgctcgcc acctcgcgga aacttaaggc cttcagggtc accacctcgc tggcgctcgc 2460 cgccgagaag acgtgcagga cagcgttact cgctgccaag aggacgatca ccattgcgtg 2520 gcccccagag tcgaggcatg tcgtctcctc gtggacaacc aagacgcgat ggaccagtgc 2580 aacgcagacg tggagaacgc agtcggtcgc cacgacggaa tcagatgagt cactatggac 2640 ctcaatctga agagggacgc caaggaagta acagtaccca aggcaatgag acaggtccca 2700 gaagtggacc aactcagggt actgagacca gccaaggaca aggcactgcg agccaaggtc 2760 agacgttttc agtgaatgca gttggacgag atgagaacat gcaatctgtt gagagaaact 2820 ttccggagtg gatccttgac tcaggatcac aggccaacat ttgtggtgat ctatctctgt 2880 tcacgacact gcgagaagac aagacgagcc gactcgactt cgctaatggt actacggagc 2940 acacgacggt tagtggctct gtcctactgc gagtaatcaa ccaagcgact ggtgaacttg 3000 aggatcgtct gctggatgat gtagtctaca cgccaaatgc caaggtcaac ctgattagta 3060 tgggatacct acagactaca ggaaactaca agctgatgtg ctcaatggac cagaagacgg 3120 cgtggatgtc gaaaccgggt accatcctaa agtttgagat gcgagacaat ctctaccggc 3180 tgcggagtga aaaggcaacc ggtgtgatgg tcatgaccat ggctaagcag gctgtagagg 3240 acaagaagac gatggaactc ctacatcagc gcttcggcca tctacatatg gctttgcttc 3300 aggtgatggc agataagatg gacttggggg taaaactcaa cacgaaagat ctgaacacct 3360 acgaatgcat tgcctgtgtt gtgagcaaga caaagtccat gagtcacaaa cgtcttccag 3420 ctcgctcgac taaaccactt gaaactctgg ctatggacat atgtacgatg aatgtggaga 3480 cagcaagtaa agctactatg ttcatgttca ttgtggatgt tgctacgaga tacaagtggg 3540 cctatctact tgagaagaag agtcaagcta cctggttcat cttgaagctg ctaaagaagt 3600 tgcggacgca tcacaaagac tacagagtgt tgcatcttcg gtcggaccaa ggtggcgaat 3660 tcgctggagc ggaactgcat gagtactgcg ttgaacacgg caccgtgcag cagttcacga 3720 acgcgtactc tcaccaagag aacgggatcg cagaaagggc gaacggcatt gtactgcctc 3780 gtgtgcgagc gatgctgaca gcaacacatt taccgaatat gttgtgggga gaagctttgc 3840 tgcacatggt gacaacacta aacatgctac ccaccaagat gttgggaatg acttcgtcac 3900 acgagaagct gtacggacgg aagccgccct tgagtatgtt gcgaacctgg ggctgtattg 3960 cacatgtacg agtaccacct gagtcaagac aaagaaagga gaagcttgaa ccacgggcac 4020 aaatgtgtct attgctcggt tacagcgact ctacgaaggg ctacaagttt ctagacctat 4080 tgacctgtca ggtgaagact gcacaaagag agaactgccg tttccacgag gagttcacag 4140 tggatggagc ctacgtgaag caactactgg agaatgcgta cctggacaca ctgcacgtgt 4200 tgccggagaa gctaccagta gtgagaatta agacgagtat cgagacctac actaccgaga 4260 gtagtgggac tgtgccgatg agcaaagcag gtgaactcct agaagttgaa tgagctgtgg 4320 acggagaaca aacgtccagt gggagtgcag agcatgatga ctcgtcgagc gtcgaacagc 4380 aagaagttga gaaatctgct gactctcagg ttgcacctga gaagggacct gaaccagtga 4440 aggtcacaaa gagacgcaag cgcaagacgc gaaagaaacc cgtgaaggat gacactggat 4500 ttgcaatcca gaaacctcca gtcgagccat gtctgaagcg accgagaagg acgcagaagg 4560 caaacgtacg attgagcgac tacgtggtag gccaagtgat agcgcatggc atggacgtgg 4620 acattcctac aacctacaag caggcacgga agagtaagtt ctggacccag tggcgggccg 4680 cgatgctggc agaactggca tcactgaaga agcacaagac ctggcgactt gtagcgaaag 4740 gtgtcaaggt gattacatgc agatgggtct ttgcggtgaa acgagatgag cgtggacgtg 4800 tcaagcggtt caaagctcgt cttgtaatcc acggattcta gcaacagttt ggcatcatct 4860 acagtgaaac atatgcaccg gtgattcgct ttgaaactat tcgtgcggcc atctacttcg 4920 ctgtgcagcg aggatgggag atactccagt acgacgtaaa gacagcgttc ctgtacggag 4980 atctcgacga gatgatatac atggagcagc cgcctggatt ccaaattgat ggaccaagcg 5040 ctgtatgcga gctattgaag agcctctatg gattgaagca ggcgcctaat gtttggaacc 5100 ggactctaca tgcgaagttg gtgacattgg gctttgagcg cacagactca gactaggggt 5160 tatatgcgtt aaaggaagag ggtgaagtta agctgctatt gactgtctac gtggatgacc 5220 tactactaat gggaccccga gacctgtgca tcaagattgc agctgcactg caagaaacct 5280 ttgagctgac tacgttgggt actgtcaagt acttgcttgg tgttgagata ctgcttgaca 5340 gaccaagcag acagattatt tactgtcaga aacaatatgt gctggaggta cttaagcggt 5400 tccacatgtc ggattgcaac ggatgtacta ctcctgaggc tactacactg tctaaggcta 5460 ctgtacctgc aacaacggac tatctaccgt accgtgaact agtgggagca cttcagtacc 5520 tagtgaattc gtcaaggcct gacatcgcac atgcaacgag acatcttggc aagttcctgg 5580 cgtcctacga tcatacacac tacgcgcaag caaagagggt acttaggtat ctaaaagcta 5640 cgtgtgatta tgggttggtg atggacgtac ctgagggaac tactgcaaat gtacgctgct 5700 actcagatgc cgactatgca aatgatcctg tggacagaag aagcatcagt ggctatgtaa 5760 acacacttga cggcaacgtg atatcgtatg caccgagaaa acaggagatt aactccctga 5820 gtacgtgcga agcggaatat gtggcgatgg ctgaagccac caaagacgtg ctgtggcttg 5880 cgggcctgtg tgacgaactg gcctggaaga ctgcccataa ccattgttgt tggggagggt 5940 taaagcgaga ggaaccattt tcgtgtggaa cccccaaaac ctggggaaga cactctcaaa 6000 ttttaaaaac cacataagcc aacaagtatc atatgctgag acgaaacgtg gagctgaaat 6060 tgcttaccac gcagcacatt gggaccgagc agatgatcgc ggacatcatg accaagccac 6120 ttgcggtggt gaagttcagt cgctttcgtc aagcaatgaa ggtgttgcca gtggtttcct 6180 cggatgacac tactacctct acgaagcctg cggcttctac cacggctgct attgctgcgg 6240 ctactgcgga gactgcgtct cctgctccga ctgctattgc tgcaattcga aaggaatagg 6300 acaaacgtgc gaagcgcgag cgattgcgtt ggatgagcgt gataactaca gtgtggtttg 6360 agtgcgatgg tgtgctggga aagccaagca ggttgcacct gacttgcgta gttctactac 6420 gataatacac gtgctacacc tgtgttgaca acggacgcta tgactacgga tgtgaaggct 6480 actactgtgg atgaggacgg tgttgactgt ggcatgctgt ttactgtacg gactactgtg 6540 ctgctggtct acaactttga tctatggggc agcgacttca acctgtgagg tcttgtgtgt 6600 gatcgcgtga atcaaggcgc tgtattgccg agatcaagtg ggag 6644 // ID Gypsy-4_ES-LTR repbase; DNA; PLN; 497 BP. XX AC CABU01005135; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_ES_; KW Gypsy-4_ES-I; Gypsy-4_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-497 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005135; Positions 2873 2377. XX SQ Sequence 497 BP; 104 A; 140 C; 130 G; 123 T; 0 other; tgttccggcc ggacgtccca accggttctt aatacgatga tggatacttt gctatggtcg 60 cgaagtatcc ggagggcgcg ggctgtaatg accggggatt cgaacagacc tattatgttc 120 ccccggtcca gcctgttgag ggggttcagg acatgtcccc tgacccccgg gattgcaccg 180 cctccctcgg cgtgccttcc cgaccaacac ccaggtggtt agttaccacc gccgatcacg 240 cgagagaaac tgagccatac ccttgccttt gtgcctgatc aactgccaac ccttgtgagt 300 gctgaacctg atacgctgat tatcgagctt gtgaggaacc atatgactgc tgttgggcgt 360 ccccgatcac ctgcttgaag tcgtacgacc gcttgattgt cctacatgat cgatctccac 420 agatatagct tattatctgt gcccaggtga gcggtaactt tcccggttga aagagagata 480 taagcttgtc tggaaca 497 // ID Copia-10_PR-LTR repbase; DNA; PLN; 255 BP. XX AC AAQX01001802; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PR_; KW Copia-10_PR-I; Copia-10_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-255 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001802; Positions 11934 11680. XX SQ Sequence 255 BP; 46 A; 68 C; 59 G; 82 T; 0 other; tgtggagatg gcgtgtcgag ctccgccagc tcacagctga ccaccttgag gttgaagttg 60 cttgtgtcca gtctttatag gcggttgact atttgtatgc gacagatagt tctctgcatg 120 tataactatc agaggaggtt gtcacctgcg aggtttcctc ctcaatccca attcttctct 180 gtgggaacca agtgtcttcc ttttcggtct tctccactca aaggtcgctc gctcctatct 240 gcctgcatct tctca 255 // ID Gypsy8-I_VC repbase; DNA; PLN; 5612 BP. XX AC scaffold_27; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy8-VC; KW Gypsy8-LTR_VC; Gypsy8-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5612 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 117-117 (2008). XX DR Genome; scaffold_27; Positions 686413 680802. XX CC Positions [4495-4977] - Integrase core CC 'GTACC' target site duplication CC LTRs are 100% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2998..5613 FT /product="Gypsy8-I_VC_1p" FT /translation="MCIDYRALNRLTIKNKYPLPRIDDTLDRLAGARIFSA FT LDLASGYHQLRIHPDDVPKSAFNTPLGHFEWLVLPFGLSNAPATFQATMNR FT IFAPYMHRFVTVYLDDILIFSKTPEEHAEHLRLVLETLRKHQLHAKLSKCE FT FWKSEVKYLGHIVGSAGIRMDPNKVDTIRNWPQPKDLSELRAFVGLANYFR FT RFIRNFASLAAPLTDLFGKPRLPDEWPPQALAAFQSIKECLSTDVLLNYPD FT FSKPFELVSDASLNGTGAVLLQDGRPIAFTSKKFSAAERNYSTGEQELLGV FT VNALREWRCYLQSNIPFTLVTDHHPLTYLKTQAHLSRRQARWVEFLEQFTF FT EWVYRPGKLNVVADALSRHPNLAMILCAVPSVTPSSDLPISSRIAEATRKD FT AWFQNPNHTRKFYEHPGGFFVLEEEGNHRIVVPNDPILKHEIISRSHSDRL FT SGHPGRDRTIELVQRSFWWPTLRTDVTDFVAKCDVCLRTKPASGLPAGELH FT PLPIPDMPWESISMDFIVGLPKTKRQHDAILVFVDRLTKMVHLAPCRTTAT FT AEQCADMMFHHVVRLHGMPQKIISDRDPRFKNLFLPALLNRAGAKQNTSTA FT FHPETDGQTERINRILGDMLRQYVSTDTEQWDRYLDAAEFAINNLRNRTTG FT QSPFFLNYGFHPRTPLQLELADTVPAAKVYVDTFHERLNLAKRFYQSAQDR FT AVQQESKKRRTVTLHAGQQVLLSTKNLSIQKGTRKLMPRWIGPFPITEMIN FT SVTFRLNLPPEYRFHDVFHVSLLRPYCADVPDGPVQPPKALELDPVTSKPV FT WTIERILKHETRKLRKRTLYRFLVKWKGHTDENNTWLDSTDISDRNLITDY FT WKAHPEHSEDAGSWGEEAA" FT CDS join(237..1598,1602..2648) FT /product="Gypsy8-I_VC_2p" FT /translation="MDPPTVTDSMNVDDVAVPPPNPPNPLNPPNLPNPPTL FT ANPPRTTEPTRDAGGSAGPSRGEHELVELKLQLVQAEIELAKIKNSGAGPS FT TAPVPVVSPDTTNLARTEPRFTFRIEPPQPSKSNSLEMFANDFQDWVAKYT FT PNNTDDALWQLRHAMREYPPGALDWLSEYRTESHNANKPIVLPELLTAFLD FT YFEPKVRDRETESLESLLKGEIRMDASKGIAEYAVRFREVARRAKFTVQKP FT LAKLFYMGLIPELRPLCRADLRGAEFTDLDTIVQFALTEERRLQARGQGQS FT RAALHYAAAASTKTKHRFHGSRQDSSKLSGKRNTEPQPWRDVVAKRARADR FT PPATEPTAVAGTATNVMNSVRPPARSVAPAGPLPPIPGPPVMVPPRPLNRP FT NEPSRTPNPLRLGTFLTNWEKYQWMQQGKCYRCGIQNDHISSRCPNPLVTP FT EMFRRPENREFAQSFSCGTRTGDMNSHDFRIIDYELLRQLERRIGRTFSLD FT AAANDDGSNSICKMFASPTRSFLNSDCSGHTIWMNPPTKLLSDFLRHYHRC FT KSYDPSISSCILIPTEQKRIRPYLKDMTRLMILLSGTQLYRSYRVGCPDPL FT PETSTYEIWWDPPKGKPIEPKCSITEADNQLHLFAGRLGANAVRVLPDTGA FT THCFVSQLMATKLGLRILPTPLAPVRLADQSTVPILGECRARLRLGSFGTD FT IRLLVLPALTVSADVILGTNFLTRYDAQLRPAHSELRLLRPNGARCTLRAM FT HAPSSSVSESPKPEFLLLERAPARTSVVSAERAFRDLFESPGSRGLLVVVN FT R" XX SQ Sequence 5612 BP; 1334 A; 1497 C; 1314 G; 1467 T; 0 other; tcttttggtg tctcaggagc gcattgctat taatatacta ttttctaagt agttggctta 60 atttagcgta tcagccgcct ccctctctga agggcggctg accattgact tctgaggcgg 120 atgttctctg gaccaccgcg cacttccaac gaagttctgt tacaagccct acttgctgga 180 cttcgtcttt ctgtgcaagg tcggcggctt tgaacgcgac ttcctgtcgt tccgccatgg 240 atccgccaac ggttactgac tcaatgaatg tagatgacgt cgctgtaccg ccaccgaacc 300 caccgaaccc gctgaaccca ccgaaccttc cgaatccacc gactctagcg aatccaccac 360 gaaccactga accgactagg gatgctggcg gctccgccgg tccatcccgt ggcgaacacg 420 aattggtgga gctgaaactc caattagtcc aagctgaaat cgaactcgcc aaaatcaaga 480 actctggagc tgggccgtca accgcaccag ttccggtggt gagtcctgat actacgaatc 540 ttgcgcgtac cgaaccccga ttcacgttcc gaattgaacc accgcagccg agcaagtcca 600 atagtcttga aatgttcgcc aacgattttc aagactgggt cgccaagtat acaccgaaca 660 acaccgatga cgccttgtgg caactgcgtc acgcgatgcg cgaataccca cctggcgctc 720 tggactggct ttccgaatac cgaaccgagt cgcataatgc caacaaaccg attgttttac 780 cggagctgtt gaccgcattc ctggattact tcgaaccgaa ggtacgcgac agggaaactg 840 aatcacttga atctttactg aaaggggaga tccgaatgga tgcttcaaaa gggatagctg 900 aatatgctgt tcgttttcgt gaagtcgctc gccgtgctaa gtttaccgtt cagaaaccgc 960 ttgcgaaatt gttttatatg ggattgattc ctgaactccg tccgctttgc cgagctgatc 1020 ttcgtggtgc tgaatttacc gatcttgata caattgtgca atttgcgctt actgaagaac 1080 gaagattgca agctcgcggg cagggccaat ctcgcgcggc tcttcactat gctgctgccg 1140 cttccacgaa aactaagcac cgtttccacg gctcccgaca ggattcttcg aagctctccg 1200 gcaaacgaaa caccgaaccg caaccgtggc gcgatgtcgt tgcgaagcgc gccagggcgg 1260 accgacctcc ggctaccgaa cctaccgcgg tggctggaac tgcgactaac gtcatgaact 1320 ccgttcgtcc gccagcgcgt tccgttgcgc ctgctggacc actgcctccg atccctggac 1380 cccctgtaat ggtacctcca cgacctctga acaggcccaa cgaaccatca cgaactccga 1440 atcctctccg tttaggtact ttccttacga attgggagaa gtaccaatgg atgcagcaag 1500 ggaagtgcta ccgttgcggc attcagaatg accacatcag ctcgcgctgt ccgaatccgc 1560 tggtaacacc ggagatgttt cgccggccag agaaccgata ggagtttgcc cagtcgtttt 1620 cgtgtggcac gcgtactggg gacatgaatt cgcatgattt ccgaattatt gattatgagt 1680 tgttgcgaca actagagcgt cgaattggac gaacgttttc tttggacgct gctgcgaacg 1740 atgatgggag taattccatt tgtaagatgt ttgcttctcc gactcgctcc tttctcaatt 1800 ccgattgctc tggccacact atctggatga atcctcccac gaaattgtta tccgatttcc 1860 tccgtcatta ccaccgttgc aagagttatg atcctagcat atcctcttgt attttgattc 1920 caactgaaca gaagagaata cgtccctatc tgaaagacat gacacgactt atgattttac 1980 tgtccggaac tcagttgtac cgttcatatc gggttggttg tccagatcct ctgcctgaaa 2040 cgagcactta tgaaatttgg tgggatccac ctaaaggaaa accgattgag ccgaaatgtt 2100 ctataaccga agccgataat cagttgcatt tatttgctgg acgccttggt gctaatgccg 2160 tacgagttct tccggacact ggcgctacgc actgcttcgt ttcccagctc atggctacca 2220 aacttggctt gcggattttg cctacaccgc ttgctccagt gcgcctggcc gaccagtcga 2280 ccgtacctat tcttggtgag tgtcgagctc gtttgcgcct tggtagtttt ggtaccgata 2340 tccgtttgct cgttttaccg gctttgactg tatcggcgga tgtgatcctt ggcacgaact 2400 tcttaacccg ttatgatgcg caattaaggc ctgcgcatag cgaactgcgt ttactacggc 2460 caaacggtgc gcgatgtacg ttgcgagcga tgcacgcccc gtcttcttct gtttccgaat 2520 caccgaaacc tgaatttctg ttgttggaaa gagcgccagc tcgcacgtct gtggtatccg 2580 cggagcgcgc gtttagagac cttttcgagt cgcccggctc gcgtgggctg ctggttgtcg 2640 tgaaccgtta accgatctac cgcacatcct ccgaccagcc ccattcctca ggtcaattct 2700 ctcgaacttc cacctgaaat cgaaacgaac cgaactttag caacaatctt gcatgaatat 2760 gcggatgtgt ttgctccgat ttccgggcta cctcctgatc gtggggtaca tcatacaata 2820 ccgttagagc caggtgcaca accgatttac cgtcctcagt accgtttgac accgttggaa 2880 aaggaagaag ttgaaaagca ggtcaaggac ttgctggata aagggtttat tcagccctca 2940 acatctcctt ttggtgcgcc tatcctcttt gtgaccaaga agaccggtgc actccgtatg 3000 tgtatcgact accgagcctt gaatcgatta acgattaaga acaaatatcc gttaccacga 3060 attgacgata cgttagaccg attagcggga gcacgaatct tttccgctct cgacttggct 3120 tctggttatc atcaactccg aattcacccg gatgacgtcc cgaaatctgc ttttaataca 3180 ccgttgggac atttcgagtg gttggtgttg ccttttgggc tttccaatgc tcctgcgacg 3240 tttcaagcaa ccatgaaccg gattttcgca ccgtatatgc accgatttgt aactgtatat 3300 ctggatgata ttctaatctt ttcgaaaact ccggaggaac atgctgagca tttgcgtttg 3360 gttcttgaaa cgctcagaaa acaccaactg cacgcgaaac tttcgaaatg tgaattctgg 3420 aaatccgaag tcaagtacct tggtcacatc gtaggctctg ctggtatccg aatggacccg 3480 aataaggtgg acacgatccg aaattggccg caacctaagg atctaagtga gctgcgcgcc 3540 ttcgttggcc ttgcgaacta tttccgacga tttatccgaa attttgcgtc tttggccgcg 3600 ccacttacgg acctctttgg caaaccgcgc ctcccggatg aatggccacc tcaggcgctg 3660 gccgcgtttc aatccattaa agaatgcctg tcaaccgatg tcttactgaa ttatccggat 3720 ttctcgaaac cgtttgagct tgtttccgac gcatcgctca atggaaccgg tgccgtactg 3780 ttgcaagatg gtcgtccgat tgctttcacg agtaagaaat tttccgctgc cgaacgcaac 3840 tactctaccg gtgaacaaga actgttgggc gttgtgaatg ctttacgcga gtggcgatgt 3900 tacttgcaaa gcaacatccc tttcaccctc gttaccgatc accatccgct tacgtatctg 3960 aaaacacaag ctcatctgag tcgacggcag gcacgctggg ttgaattcct cgagcaattt 4020 acgtttgagt gggtctaccg acctgggaaa ctcaacgttg ttgccgatgc tctttctcga 4080 catccgaatc tggccatgat tctctgtgcg gttccttccg ttactccttc ttccgacctc 4140 ccgatttcgt cccgaattgc ggaagcgacc cgcaaggacg cctggtttca gaatccgaat 4200 catacacgaa aattttatga acacccagga gggttctttg tcttggagga ggaggggaat 4260 caccgaatcg tcgtaccgaa tgatccgatt ctgaaacacg aaattatctc acgaagtcac 4320 tctgatcgtt tgtctggtca tcctggtcgc gatcggacca ttgaattggt tcaacgaagt 4380 ttctggtggc caactcttcg aactgatgtc acggattttg tggcgaagtg tgatgtatgt 4440 ctccgaacca aaccggcttc tggtttaccg gcaggtgaat tacatccact accgatccct 4500 gatatgcctt gggaaagtat ttccatggac tttattgtgg gacttccgaa aaccaaacgc 4560 cagcacgatg ctattctggt gtttgtggat cgcttaacga aaatggtaca tctggctcct 4620 tgccgtacta ccgctaccgc cgaacaatgt gctgacatga tgtttcatca cgtcgtgaga 4680 cttcatggaa tgccacaaaa gattatctcc gaccgtgacc cgagatttaa gaatttgttt 4740 ctaccggctt tgctcaatcg agctggtgca aaacaaaaca cgagtaccgc ttttcaccct 4800 gaaaccgatg gacaaaccga acgaatcaac cgaatccttg gagatatgtt acgacaatac 4860 gtttcgactg acactgaaca atgggatcgt tatctcgatg ccgctgaatt cgcgattaac 4920 aatctgcgaa accgaaccac gggtcagtca cctttctttc tgaattacgg cttccacccg 4980 cgaacgcctt tacagttgga acttgctgat accgttcccg ctgctaaggt gtacgtggat 5040 acgtttcatg aacgactgaa tcttgcgaaa cgattctatc agtctgcgca agaccgagct 5100 gtacaacagg agagtaagaa acgacgtacc gtgaccctac atgctggtca acaggtatta 5160 ctgagtacga aaaatctgtc tatacagaaa ggtacacgaa aactgatgcc tcgttggatt 5220 ggaccttttc cgattactga aatgattaat tccgttactt tccgtttgaa tttgcctcct 5280 gaataccgat tccacgatgt gtttcatgtg tccttactcc gaccttactg tgctgacgtc 5340 cctgatggac ctgttcagcc tccgaaagct ttggaacttg accctgtcac ttccaagcct 5400 gtctggacga ttgaacgaat tctgaagcat gaaacccgta aactgagaaa acgaacctta 5460 taccgatttc tggtcaaatg gaaaggacat actgatgaga acaatacgtg gcttgattct 5520 accgatattt ccgatcgaaa cctgattacc gattactgga aagctcaccc ggaacacagc 5580 gaggacgctg gttcctgggg ggaggaggca gc 5612 // ID AFUT1 repbase; DNA; PLN; 6914 BP. XX AC L76086; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Aspergillus fumigatus retrotransposon-like element (Afut1); DE reverse transcriptase; ribonuclease H and endonuclease DE pseudogenes; LTR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; AFUT1; KW Gypsy group; LTR; Retrotransposon Afut1; endonuclease; KW reverse transcriptase; Ribonuclease H. XX OS Aspergillus fumigatus OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; OC Neosartorya. XX RN [1] RP 1-6914 RA Neuveglise C., Sarfati J., Latge P.J. and Paris S.; RT "Afut1, a retrotransposon-like element from Aspergillus RT fumigatus."; RL Nucleic Acids Res 24(8), 1428-1434 (1996). XX DR GenBank; L76086; Positions 6 6919. XX CC Comparison of the peptidic sequences with other putative CC polypeptides CC of fungal LTR retrotransposons showed that Afut1 is a member of CC the CC Gypsy group. CC Afut1 is a defective element: the putative coding domains contain CC multiple stop codons due exclusively to transitions from C:G to CC T:A. CC 5 bp target duplication. CC 5' LTR 1..282 CC CDS 2228..2777 CC /note="homologue of gene encoding the reverse CC transcriptase in retroviruses and retrotransposons" CC CDS 2778..3489 CC /note="homologue of gene encoding the ribonuclease H of CC retroviruses and retrotransposons" CC CDS 3855..4778 CC /note="homologue of gene encoding the endonuclease of CC retroviruses and retrotransposons" CC 3' LTR 6633..6914. XX SQ Sequence 6914 BP; 2413 A; 1332 C; 1221 G; 1948 T; 0 other; tgtcacatgc tcagaacaac ataagctcag cgagccgcca gcggcaagcc ccctcttact 60 taggtaatta tatacccgat tctaaacaca ctcagtagaa ataggagttc taaatagctt 120 gggggagact aagcagtttg ttctaatcat taacacacat atattttcac taatacatct 180 atacatccct gaaacccagt attcctatcc atagccacag cctagttgcc gtcacatcgc 240 tggctaggac cccctagatt aattacctct aatcacctta tagtttaaac tgcttcccct 300 gcggcctact agatataaat acttaataat atgctaacta gtctaataat agggacttta 360 agggcctact gaaccagcat ctagaatcta gttaagaatt aacctttaag tacagctatg 420 ggtcctctat gagaagcccg cgtagcaatc ccccttctgt ggattgggtg gctagtaagt 480 taaggaccct ggaagtaaat atatcctaac tacttcagac tagcagcata atacctatac 540 ataaccataa tcctagctcc acgctgccag gtattactag taataccgcc ctaataatta 600 tgctagacca ggctagcctt gcttagctta tctaggggtt aagggcagct atagaccagc 660 ataataataa attaaggggc cttaagctag ctgacctagc tatataggat ggccacaggg 720 cctatgctgg cgctaagctg agaatattcc tatataacct ctctaaatac tacctggcta 780 agccctagac atttaataat aacataaata agatcctata cgcgacctcc taacttagca 840 tagatattaa gaatacttag cagaagcagc accctgaggg atataaggct agttataagg 900 aattcctata ggactatatt aaactatagg gggactacca gaacactact gtgtactagc 960 ttctatagct ctagtatagg agatatattt aatctttctt tacagagttg caagagttgc 1020 aaaatataat taagcctagc ctaggcctag agtggttcta gataaggata gctatagaga 1080 aactatatcc taatataaag gcagaagtcc agcacacgcc tagctataat taattatttg 1140 actacctcaa ggcccttgta gcctagcatg ataagatcct gtagtaggaa ggataaccta 1200 ctaccttata gttaactagg acaggcaact ataactacca tctgtagaag gcagatgccc 1260 taagtaggtg gaaacagtaa tatagtagct tactaaagac acccctaaga gctgctagcg 1320 acactaaaag gaaggattcc tcctttaata agcacctgct ggggaaacct aataataggt 1380 agggatcatc tagtaataag gactagcttc agaaggaggg atgctgcttt tattataagg 1440 aaaagaggca cctcctccta acctacctaa agagagccta acagagggga ggcactctac 1500 cctaagggcc tcctacctta caataggaac ccaagcccta ggagcttgat gtcttatact 1560 acactaggga accgctagta cctcctgtcc ttgctaaggt tgaaactata gttaatagga 1620 caggtgtaac aactaaggtg cttcttaact ctagggctag gcctaactat atattatact 1680 aatttataat atagaatggg tactaattta aaaatagtac aatgcttcct cctatagaac 1740 ttactaatag cttaaaagta aaaatctata gggaatagtc actaccagta tcagcaatag 1800 atagggaatt aactaagaag acattctaaa ttcccttctt aattactaat attacaaggt 1860 ataatatagt cttaggacaa aattagctcc agcaagccaa cccagacatt aattagaggg 1920 tgagtagctg gtattattac attaactcac tagggattaa gatcctggag ctaaaggagt 1980 tccttaagaa gtcacagggc aaggaccttt tcctctttat aattaattag gctagatata 2040 aagcccctaa tctaggaata ccactgcagt attaggaata cactagggta tttttagaaa 2100 aggaagctag taccctaccc ttagacagag cagtctataa gatatagcta cttaatagga 2160 agtcactact atatagcccc ctatttacta tattatagct agagctagag gctctgtgca 2220 aatatcttga taaaatactt aagaaaaggt ggattaggga atcatctagc ccagcagcag 2280 cactagtact ctttataaag aagctagata gaggcctgtg tctctgcatt aactactagg 2340 ggctgaatgc tattatagtt aagaattaat accccttacc ctagattaat aaattaatag 2400 atcgcatcta gggagtgaag ttctttacta agctagatct gtgggatgct tactattata 2460 tctatatata gcagggtaat aagtagaaga tagcattccg cacctgctat agctaattta 2520 aatatttagt tatgcctttt aggctaacta acacaccagt caccttctag gcttatatta 2580 ataagataat gcagggaatt cttaataagt tctgtattgt ctacctagat aatattctta 2640 tctactcaca gacagaagag gaatatgagt agtatattaa ggaggttctc tagcatctta 2700 atagtatgaa cctatatact aaactattaa aatataagtt ttataagaca gaagttaagt 2760 ttcttagctt tcttataggc taggaagggg tctgggtaga tcctatataa cttagcactg 2820 ttagtaagtg gctggtgcct tacttattct ataatattta gatttttctg gggtttatag 2880 gattcttcta atactttatt aaggcatact tacagatcac tattccccta acaaacctgc 2940 tgaagggggt aaagaataga tataatccta ggtcttttac ttagacagag gaggcccaga 3000 aggcattcta ggacctaaag gatgcattca ttaaaaccct aatccttgct cattttaacc 3060 ctaagaagct aatccttctt attactaata tattaggttt tataattata ggtattctcc 3120 tatagcctga cagtaactta atagagacat atagcagcca taattagcgc ctaattacat 3180 tctacttaag aaagctttat aatactaaat aatagtatga ggtatataac caggagttac 3240 ttataattat taagtgcttt aagtactaga gacactacct agaaggtagc tgttacctaa 3300 ttagggtcta gacagactat ataaacctaa cttacttttt tactactaag actttaaata 3360 taagacaggc ctagtgggca gagttgctcg cggcctataa ttttataatt aaatataaac 3420 taagacagct caaccccata gacatactat taaggtacta ggattataag ctaactaggg 3480 atgaagaaac tagagctagc ctcttaccta cacttcagag gaagctgaca ccaggcttat 3540 agttaaacta gaccagcata aataacccta gtatttatag tgtgttagtg ggggcaggaa 3600 gtctagaatt cctattccca agactgctag tgatggaggc tactagccct gaggttactt 3660 aggactcatc aatagcttgc ttaaaggaca ttatccagga actatagtat agggatacct 3720 atatataact agtttctaag tggctgcagg gggtccctaa taatacctag gttaggaact 3780 agtaaatcaa cagtaagggt ctcctgtaat ttaaagatgc tatttatata cctactagta 3840 ctacagttag gcaagagctt ttgaaaatac actataataa cccctacaca gggcatctag 3900 gggtagagaa aatagtggcc ttgctctagt ataaattcta ctaggaaggg atgtaacata 3960 atattaaaga atacatctat atatatgcag catattaaaa gactaagact ccccagcatc 4020 ttactacagg gaagcttgct ttactaccta tactaaaaga accctagagt aatttatcta 4080 tagattttat tacctcacta cccccattag catgaggtca agaagtattc aatgcaattc 4140 tagtaattat taattaatat acaaaaatag ctaaatatat ccctattagg aagataatta 4200 ccacagagga acttgctaat gtgttcttag aaaaggttat cctataatat agtatgctaa 4260 gaagcctggt aactaacagg gacacactat ttactagcta ctactagact aatttctata 4320 gatccttaag gattaagaaa tagataagta tagtatttta ttcacaaact aatagccaga 4380 cagaacgcca gaatcagata ctagaggtat acttaaggat ctttattaac tactagtaag 4440 ataactaggt tatatagtta cagatagcag agtttgcata taactacacc ccatatacct 4500 taacaaaaat cacacccttt aaggctgcct atggctacgt cctagtatta ccccagctta 4560 ctaatattac taataattta tcagtagtag tagtagagga atgcctaaaa gtacttcagg 4620 atctgtaaaa ctagctagag agtcacctag tagcagctta ggagacataa gctaggtatt 4680 ataaccagaa gcaccaggac atctcatttt ccattagaga aaaggtgcta ctcttattaa 4740 gaaacttaag aatatggcgt ctacataaga aacttaataa taaatacgac aggctgtttg 4800 aaattattac tattataggg aagtaggcat acaccctgca cttactaaaa ttatatagac 4860 aaatccaccc taccttctat atatccctcc ttaagaagtg gaaccctcag ggcaacagtg 4920 agacaccatc agaatcccag ccccttaata ttaataaaga agaggaatag gaggtagagg 4980 atatactagc agaatagact taacagggag agatataata tctagtcaag tagaaaggat 5040 tccctaacta taagaactca tgggaactag aagacaacct agttaatact atagatatgc 5100 taaatatata taaagagcaa gctagacagg ctgcagagca gccccattaa aggagaggaa 5160 ggagatagcc tttttcctat aaggttttta ctatctacca gctcctacct atcatcataa 5220 cagcataaac cttcctctat tttcctatag agtttagagg tttaatagga ataggtctat 5280 aactatagtc tatataaagc ttgtataaaa tagggacctc actatgctag cagcagtatc 5340 atattataaa aagacagata taggaataat tactactcct tactcttatt actagattta 5400 ctagtaaccc tagcaaagtt ctgaaacacc acagtcttat cctcaggggt gggggtcagg 5460 tgtcctataa tcatatttgc agcaatataa agcttaaata agttataatt aattaattac 5520 agagtataaa tgaccctgcc tatgttatac ttaggcataa agcctattat tacctctatc 5580 tcattgcaca acactataat agccctagta ttatacttag taattagagt ctcctaaaat 5640 atagcaactc agtgaacaag ctataggggg actggcttgc ataacttctt taaacactag 5700 tagtaataat acttataatt aatattcacc caaatatagg gataggccac cccctgctac 5760 cactcctact taatatagtg ctaataatct ataaagggga ggggcatagc gccatcagcc 5820 tacaggatag taggagaggt agatagagag ggtgataggg aggcagaata agagacagac 5880 tcagactagg aataattagc cactatagta gtaggtatag ataaagtaac acaacagcac 5940 tgaacagcag gggaaatagt aattttatta ctagactact tcctcatcag cttagtaggc 6000 ttaacctaag gtaactagac tctgcaaaat aagtacttac actagaacta tctaaacagg 6060 gcaagggaga agcattagcc tactaatact tctccctatg ggagcaagca ggagtttggg 6120 aatacttaat aagtatatta agcagtgtag acacgtcaga ctactagcaa aaaagaaata 6180 gaatattatt aaagggttag aatcaacaag agaaaggggg ggaactacta atatttatac 6240 tactaagaaa gcaatactgc cagaccctta atacctatta atcttaatca cttaacaaga 6300 ccttactact atactcatta attattcgct cctgacttat tgtaaaggct aaatataata 6360 gcatgttaat aagataatac tataacatca taatagctgg gggaatctaa ctaatcacta 6420 gcatcacacc agacaaagcc tattaaggaa gataataatt ctattaagaa ctaacgcagt 6480 gtattccaac acccttctaa caccttttaa acactgatat aaagcccttt gttaaccgtg 6540 attaatagca aagaactact agtattgatc cttaacagct actttaggat tagcatggtt 6600 caggacaaac ctctctgaag gggggggata gttattatat actcagaaca acataagccc 6660 agtaagctgc cagtggcaag ccccctctca ctcaggtaat tatataccca attccaaaca 6720 cactcagtag aaataggagt tctaaatagc ttaggggaga ctaagcagtt cattctgatc 6780 attaacatac atatattttc actaatacat ctatacatcc ctgaaaccca gtattcctat 6840 ccatagccgc agcctagtcg ccgtcgcatc gctggctagg accccctagg tcgattacct 6900 ccgatcgcct taca 6914 // ID Copia-30_PIT-I repbase; DNA; PLN; 4298 BP. XX AC AATU01002123; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-30_PIT_; KW Copia-30_PIT-LTR; Copia-30_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4298 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002123; Positions 335269 330972. XX CC Positions [1523-1984] - Integrase core CC 'TATTA' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 2403..4298 FT /product="Copia-30_PIT-I_1p" FT /translation="MATPGEEDVAMAPTPSAVSSNLETPGQPTSGSSQPVG FT AARRQARLRGDPRLEKAKNPVRKSSRIPRPSQRKLNYDESHLSMEEVCAMV FT EERVFPAAVDGRSVRDGYIYSKLTPSDITNWALGVEPLNIEEVDASDDRSE FT WERAMDDEIQSLLDNGTFEEVPLPPGRTAVKSKWVFKTKTLADGSLDKNKA FT RVVAKGYSQRFGVDYTDTFSPVVRHSTLRLVLVIVVARRMKRMQLDVKAAF FT LNSALDEEIYLEPAEGYKNADEHVWRLRKALYGLKQASRSWYENLRLFLES FT QGFYQGEADYCLFSKGSADDDNLMIILVYVDDMLVFATHDEDLASFKAAME FT TTYDVNDFEDATYFLGLELQWSPSGEEVTIGQQKYAKSILERFNMDKTMPA FT RTPMEERFRDQLVKAQEVINFRPRPAIGALLYLTVNTRPDMATAVRILAQE FT IETPTDCLKHGVEHVFRYLRNTQDFGLVYKSSAVKRLVVYCDAAFAVERNA FT KSATGYAIFYDGCPIEWGSKKQSMVTLSATEAEYIAMGSGVQECIGINLAL FT KDLGLEVDQITVFEDNQGAQHLAESKVVTQRSRHIDTKYHWLREKVKEDHI FT RIEYCPTAETTSPRLWEQPSSSTFVTVSPFVEWE" XX SQ Sequence 4298 BP; 1042 A; 1047 C; 1334 G; 875 T; 0 other; ggttatgacg tccgcaacta cggccacggc gttcgcgacg aagctgaagc agttcaacgg 60 tactgggttc ccagcgtggg gcgcccaggt gaagctggtc ctcgagatca agggactcta 120 agctgacgtc gagaaggatg cgccaccggc tgacgggctt gcagcggagg ctgaagcgct 180 gaaggtgtac gatgcggctg tcgccgctgg aacgtccggg acggtggctc cgagaacacc 240 actacatgaa caagtcatgc ggctgaagat ggcgtcatcg atcatcctgt cggcgctgac 300 ggagaaactg gcagcggagg tgtatctgtt tgatcacccg ctggccatgc tgcgccacct 360 gcggctgacc tacaacgtga agtgtagtgc cagcgtcggt gctgcaaaac gagagtacat 420 gagtctgtac ctcgctgatg gtgactccat gacggagcac atcaagacca ccaagagggg 480 attggggacc tccaagagca gcgtgtgtac ttggcggacg aagagaagcg ccagagcttc 540 atgcagagtc tgggacctgc gtggaacgat tttgtcggcg ttctcgagat gtgcccgaca 600 ttcgaggcga tggtgacgcg gtgccaagct gaggtaattc gtcgagacca gcagaagaat 660 cgtcgctcga cgaatggcag tggtaagtcg aatgcatcga atggagcctt ctctgctgaa 720 caagtggctg gcaagaaggg gaagaataaa cgtgacatga ccaaggtcaa gtgttacagc 780 tgccaagaaa tggggcactt cgcgcgagac tgctcgaagg agcgagtgcc accaaagggc 840 aagggcggcg aggccgctag tgtggcgttt tcggtccacg atgtgaccga cgagtgcaag 900 cgagagtgga tcgtggacag cggggccacg agccacatga caggacatgc tgacaacttg 960 gtgggggcgc gtgagctggc agagcctcgt gtgcccacag ttgcgtccgg tgacagcttg 1020 gtggcaaccg ccatggggca agcaccactg tacaaaaacg ggaaagaggt atgcgtcctc 1080 caagatgtcc tatttgtgaa gggactagcc cgcaacctcg tgtctgttga ggcggcatcg 1140 cgtcgcggga tgacggtgga gtttaaggga gttggttgcg ctattcgcgc gtcgaatgga 1200 gtgaccatac aagcagcgtg agcgcacaac caaatgtacg tgctggatgc tgccagcaag 1260 tcctggcgtc catggctgcg gccacaggca acgcacctag tgttgcatca tcatcatctg 1320 tatcttcagc tttaacgccc aggtgtaaaa agcgcccgtc gaagatgtcg cgatgatgac 1380 gagcgaagcg cctcatgtgg agacgtggca tcgccgcttt ggacacttaa atgtgaaaag 1440 tgttcaacag ctactgggag agctgagggt accatggaaa ggtgctgtga agcaagcgtg 1500 cccaacgtgc gtgagtggca agctgtcaca gaagccattt gccgcaaagg acaagcgcgt 1560 cctcaagaaa aaccagatcc tgctcgcaat cgactacgtg gggccaatgc aggtgacgtc 1620 tcgtgaaggt tttactggta tggcgaacgt tgttgtggag ccatttcatc tagatatggt 1680 gtatccactt cgtgtgaaga gctctcaagc tcaactggat gctatcaagg actgcatcgc 1740 gaagatgaag gcgtatgctc cgacgtatcg tgtggcgttc gtcaagtcag acaacgctgc 1800 agagtacaca ggtggtgtgt ttgctgccta ttgtgagaag aacgacattg tacaggagtt 1860 ctcgactccg tacagtccac agcagaatgg gaaggtcgag cgtggcaatc gcgtaattgt 1920 cgagatggct cggtccatga tgcttggagc caacttgcca gctgtgtact gggctgacgc 1980 agtcgtggac gctgggtaca gtatgtgcgg aatagccgcc caacgaaggt gcttgatggg 2040 aagacgccga tggaggcctt gtttgggaaa gctcctgaca tcagcaactt gagagtcttt 2100 ggatgtaagg cgcaagcact ggttccgaag gagcaccgta agaatctgga ctccaagaca 2160 cgcaacggca tcttcatcgg gtatgctaca ggtggtgcgt acttggtgta cattccgcac 2220 catgggactg gtgaagcaat cacggcgcgc accgttgtat tctacgaata ccagttcctt 2280 cctgccgaag atggagacga gatcacgata agctcgcagc tggatctctt gcagttggat 2340 gcggttacag cacgctttta tcacgtctcg agacagtaga agaagaaaag caagatgtgt 2400 ccatggccac acccggtgag gaggacgtgg caatggcgcc gacaccgagc gcagtaagca 2460 gcaatttgga aacaccgggt caaccaacga gtgggagttc tcaaccagta ggagccgctc 2520 gtaggcaagc ccggcttcga ggtgatccac gtctagagaa ggcaaagaat cctgttcgca 2580 agtccagcag gatcccgagg ccaagtcagc gcaagctgaa ctacgacgag tcgcacttgt 2640 ccatggagga ggtctgcgcg atggttgaag agcgtgtttt tcctgcagca gttgatggta 2700 ggagtgttcg agacggctac atctacagca agctaacacc aagtgacatt acgaattggg 2760 ctctgggtgt tgagccgctc aacattgaag aagtcgacgc gtctgatgat cgaagcgagt 2820 gggagcgtgc aatggacgac gagatccaga gtcttctgga caatgggacg ttcgaagaag 2880 taccattgcc tccaggccgc actgctgtga agtcaaaatg ggtgttcaaa acgaaaactc 2940 ttgcggatgg cagcttggac aagaacaaag cacgtgtcgt cgctaagggg tacagccagc 3000 ggttcggagt ggactacact gacacgttca gcccggtcgt gcgccacagc actcttcgtc 3060 ttgtgctggt cattgtggtg gcgagacgca tgaagcgcat gcagttggat gtgaaggccg 3120 cgtttctcaa ctcagccttg gacgaagaga tctacctgga accagctgaa ggctacaaga 3180 atgctgatga acacgtatgg cgtctgcgca aggcactcta cgggctaaag caagcgtcaa 3240 gatcctggta cgagaacctg cgtctctttc tggagagtca aggcttctat caaggagaag 3300 ccgactactg cctgttctcg aagggcagcg cggatgacga caatctgatg ataatactcg 3360 tttacgttga cgacatgttg gtgttcgcaa cgcacgatga ggacctggcc tcgttcaagg 3420 ctgctatgga aacgacatac gacgtgaacg acttcgagga tgccacctac ttccttggat 3480 tggagctgca gtggtcacca agtggtgaag aagtgactat cgggcagcag aagtatgcga 3540 agtcgatcct cgagcggttc aacatggata aaacgatgcc agcacgcact ccgatggagg 3600 aacgttttcg tgatcaactc gtcaaggcgc aggaggtgat caactttcgt ccccgtcctg 3660 ccatcggagc gctgctatat ctgacggtaa acacgagacc ggatatggct actgcggtgc 3720 ggattcttgc tcaagagatc gagactccga ccgactgcct caagcacggt gtggagcacg 3780 tctttcggta cctgcgcaac actcaagatt ttgggctggt atacaagagc agtgctgtaa 3840 aaagactcgt tgtatactgc gacgctgcat tcgcagtgga gcgcaatgct aagtcggcga 3900 cggggtacgc tatcttctac gacggctgcc cgatcgagtg gggatcgaag aagcagtcga 3960 tggtgacgct gtccgccacc gaggctgagt acattgcgat ggggagcggt gtccaggagt 4020 gtattgggat caacttggcc ttaaaggatt tgggactgga agttgaccag atcactgtgt 4080 tcgaagacaa ccaaggggcc caacacctgg cggagagcaa ggtcgtgacg caacgctcgc 4140 gccacatcga cacgaagtat cactggcttc gtgagaaggt gaaggaggac cacattcgta 4200 tcgagtactg ccccactgcg gagaccactt caccaaggct ctgggagcaa ccaagttcca 4260 gtactttcgt gaccgtctcg ccgttcgtcg agtgggag 4298 // ID Gypsy-3_PIT-LTR repbase; DNA; PLN; 234 BP. XX AC AATU01002995; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PIT_; KW Gypsy-3_PIT-I; Gypsy-3_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-234 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002995; Positions 84138 84371. XX SQ Sequence 234 BP; 66 A; 53 C; 63 G; 52 T; 0 other; tgtagtggtg gatagttcaa tggcaagcct tcacccactc acacagggca aagcacagga 60 aggcgatacc gagctggcta gttaggggtt aggacaacac agccaaggca tagggcgtgc 120 ttggcagtga atggacatta gggattctac tctagaagac tcacaataga tttttgggtt 180 taccaggaag cgccagcttc cctagcagta gtcttatcgc taagacctac taca 234 // ID Copia-5_SMo-LTR repbase; DNA; PLN; 156 BP. XX AC ADFJ01001740; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_SMo_; KW Copia-5_SMo-I; Copia-5_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-156 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01001740; Positions 59388 59543. XX SQ Sequence 156 BP; 55 A; 21 C; 43 G; 37 T; 0 other; tgtagatagc cagcctggag tctaatccaa ggtggcaaga gatttatgtg gacgctgaaa 60 tgagcggaca caagacttgt atatatttac atggagaaaa tgaaaaggca gtaggttagg 120 ggaaacagag tgtgtcgttt aactagaaaa ctatca 156 // ID TSE5_LTR repbase; DNA; PLN; 370 BP. XX AC AJ439554; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE5_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TSE5_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-370 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439554; Positions 1 370. XX SQ Sequence 370 BP; 139 A; 59 C; 47 G; 125 T; 0 other; tgttgtgatt aatgctaagt tgcaatactt acattctaat aacaaagtag ataagttacc 60 aaataacatt taacttgcta cttccacttt aggaatcaac ttcctaaata ggcactattg 120 gccgctgtag gacaaaaagc ggataacaaa ttttctaaga aaaatttgat gtcatcgaga 180 aaaactaatc gttatataaa agaactcaat gacttatgta cactaaatac tagagtttat 240 acttactttg tacattatat agaagaactc taaccgaaat attttatatt aattgatatt 300 tataaaatat gtcctcaagt tccattaacc atatgtttgg aaatttctct ttagttaacc 360 tgcgtcaaca 370 // ID Copia-12_PSo-I repbase; DNA; PLN; 5010 BP. XX AC AAQY01000186; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PSo_; KW Copia-12_PSo-LTR; Copia-12_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5010 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000186; Positions 299517 294508. XX CC Positions [1721-2227] - Integrase core CC 'CTTTG' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 188..4447 FT /product="Copia-12_PSo-I_1p" FT /translation="MEDLVELDESKEAEAHATWTNEMAHAKEIINDAMTNH FT IMKTVKYEPTPFRVMERLKKRFMGKTYLKYAEERAKLSRLRLAPNGNVPDH FT QSEMRRLMETIAGVGRPVDEYVKPALLIGSLPREYDHVVQPFLASHKPPNA FT DDPPNYEQLELALEMAYDNRQGRKAEGAKDNDDEEKAFFAGGGRGGGRGRG FT RGRGGRSGGHGRGSGGGRGSGGRGSQGGGRGTGRGQAGSGQKPGGACYHCH FT EAGHHVFDCPFLGKRPPAEDRSSTQAQKRVKMSGGKSAKAAETSSYANESD FT DSAYVILQVMKMEKPVADKPHDNWYLDSGASSHISNQLTDFMELTPLSARI FT RVGGKNSLGVEGIGTVVKELETTGGRCSLTLRGVRYAPELQCSLYSVRRQL FT NQYLPERDRVKVHFDEADRADVILQAGVTTAQVDYTNLYRLKLERPQEVAM FT VALPARVSSLELWHSRLGHPGKNAFNALFSHDQWPLPHVNLRIPVGFNCET FT CVKGKLTRKSMKKSRTQTREWLVGEKVHVDAWGPYAEHSYGGKRYFAVFVD FT DASRFVTVYLLEHRSEVYQKFEEYYQRVKTQQHVRMKALRSDNAKEFKKLQ FT STCDTKHGMEFDSSIKHTPEQNGVAERMVRTITERMRCMLVHFDLPEAMWG FT EAAMTAAYSVNIMPSSVRGMEVPYAVWHRQTPAYEKLRTFGCAVLSYIDKV FT ERRKMQAKAREAVFVGYSREKRGYRLLDSKTNKAFYSHTVVFYENKADRLL FT MASASTPSGASGKEYLGVDRSVEDDIEPMLDEMHDDSNDGGSYRDDGDCWT FT GGASDSRDGGDYRTGGADDTRCDDRPGGAVEQDVRSDGTCGSKKRGPGGDA FT AAPRPKRVRFAVFESGRSSKVAERDEGRGVSSTASGCDRSSKVAERDEERV FT NGHEADHLRGECVPGRKRKRSSGRHKGPAADETRALPGSQEVEEVDSRSSA FT AERADSDSQVSSDAASVGRLSTPPCTALREYTGPRGTRHKDPPVTRSGRVS FT KPPTWFGDYVYIAYENTNPDDDVNSLPAGWRKARAELQRAMANELILAWWE FT DYCCMSTGEFEEPDTFGDAMESEHSLQWKNAADDEFDSLMKNDTWELVPRE FT KHVKVLQNRWIFRVKYLANGEIERFQARLVIKGFMQIDGIDYLEVYSPVVR FT LETLRVLLTLAAVWDYEVHQMDVTTAFLNGAIDVEVCLEQPEGYKVKGKED FT WVCRLKKSLYGLKQAPRVWFQLLKSFLEEQGFTMLQSEACVAVKVIDGQLV FT FIPLYVDDLILFAPSMELINKMKMFEDRFAMKDLGELHYILDWEITRNRAE FT RTMFIGQQKYAETVLKRFNMQDCNGCKTPSTADLKLSKAMCPTENDERQLM FT RSKPYRAVVGSLMYLMLGTRPDLAYLVRECSQFLENPGLLHWRAAKRGLRY FT LKDTAD" XX SQ Sequence 5010 BP; 1254 A; 1079 C; 1606 G; 1071 T; 0 other; ggttatgagc ccacggctca cgcgtgggga gcacagcaac taggacgtca cggcggatca 60 gaagaagacg cccaaggagt cacacgagga gaagaggacg atcccgccgt ttaacggcaa 120 ggactacgag gtctggcacg agcgagtcaa gctcaagctg gagaggaaga agctgtggaa 180 gtactgcatg gaggacttgg tcgagctgga cgagagcaag gaggcagagg cgcacgcgac 240 gtggacgaac gagatggccc acgccaagga gatcattaac gacgcaatga cgaatcacat 300 aatgaagact gtgaagtatg aacccacccc gtttcgtgtc atggagcgcc tgaaaaagag 360 atttatgggc aagacgtacc tgaagtacgc tgaggagagg gccaagctca gtcggctacg 420 gctcgctccc aacggcaatg tgccagatca ccagagcgag atgcgtcggc tgatggagac 480 cattgctgga gtcgggcgtc ctgtggacga gtatgtaaag ccagcactat tgattggatc 540 tctgccgcgc gaatatgatc atgttgtaca gccgtttctc gccagtcaca agcccccaaa 600 tgctgatgat cctcctaatt atgaacaact tgaactcgca ttggagatgg cttacgacaa 660 tcgccaaggt cggaaagcag agggcgccaa ggacaatgat gatgaagaaa aggcgttctt 720 tgctggtgga ggaagaggtg gaggacgtgg tcgcggccgt ggacgtggtg gtcgatctgg 780 aggacacggg cgcggttccg gtggtggacg tggttctggc ggtcgcggca gccaaggtgg 840 tggacgtgga actggacgtg ggcaagccgg cagtggacaa aagccaggtg gtgcttgtta 900 tcactgccat gaagcagggc accatgtgtt tgattgcccg tttcttggca agcgacctcc 960 agccgaggat cgcagcagca cccaagctca gaagcgcgtg aagatgagtg gaggaaagag 1020 tgctaaggct gctgaaacga gtagctacgc taatgaaagt gatgacagcg cgtatgttat 1080 tcttcaagtg atgaaaatgg aaaagccggt cgcagacaaa ccccatgata actggtatct 1140 ggactctggt gcatcgagtc atatttcgaa ccagctcact gatttcatgg agctcacgcc 1200 tcttagcgcc cggattcgag ttggaggaaa gaactcactg ggtgttgagg gtattggtac 1260 tgtggttaaa gagctggaga ctactggtgg gaggtgctca ctgacgctgc gaggggttcg 1320 ttatgctcca gagctgcagt gcagtctcta ttctgtgcga cggcaactga accaatatct 1380 gcctgaacgt gatcgtgtga aggtgcactt tgatgaggca gatcgcgctg atgttatctt 1440 acaggctggt gtgactaccg ctcaagttga ttataccaat ctctatcgct tgaagttgga 1500 gagaccccaa gaggtagcca tggtggcgct accagctcga gtgagtagtt tggagctgtg 1560 gcattcgaga ttggggcacc ctggcaagaa cgcgtttaat gcgctattca gccatgatca 1620 gtggccgttg ccacatgtga acttgcgtat cccggtgggt ttcaattgcg agacctgtgt 1680 gaaggggaaa cttacgagga agagcatgaa gaagtctcgg acacagaccc gcgagtggtt 1740 agttggcgaa aaggtccatg tggacgcgtg gggtccgtat gcagagcact cctacggtgg 1800 taaacggtac tttgccgtgt tcgttgatga tgcgagtcgg tttgtcaccg tgtatcttct 1860 ggagcatcgt tcggaagtgt accagaagtt tgaggagtac tatcaacgcg tcaagacgca 1920 gcagcatgtc agaatgaaag cgctaaggtc agacaatgca aaggagttca agaagctgca 1980 aagtacgtgt gacacgaagc atggtatgga gtttgacagc agcatcaagc atactccgga 2040 gcaaaatggt gtcgcggaga gaatggtccg caccattacg gagagaatgc gatgcatgct 2100 cgtgcacttc gacctgcctg aagcgatgtg gggtgaggca gcgatgacag ctgcatactc 2160 cgtgaacatt atgccaagct cggttcgagg catggaggta ccgtatgcag tatggcaccg 2220 tcagactcct gcttatgaga agttgcggac gtttggctgc gccgtcctgt cgtacatcga 2280 caaggtggag agacggaaga tgcaggcgaa agcacgggag gcggtcttcg ttggatattc 2340 gcgagagaag cgaggctatc gcttgctcga tagcaagacc aacaaggcct tctacagcca 2400 tactgtcgtg ttctatgaga ataaagctga tcgattgctc atggcctcgg catcaacgcc 2460 aagtggagcc tccggtaagg aatatttagg cgttgataga tcagtagagg atgacattga 2520 gccaatgctg gatgaaatgc atgatgactc aaatgatgga ggtagttatc gtgatgatgg 2580 agattgctgg actggtgggg ccagcgactc cagagacgga ggtgattatc ggactggtgg 2640 ggctgatgac acccgatgtg atgaccgacc aggtggggca gttgagcaag atgtccggtc 2700 agatgggaca tgtgggtcca agaagagagg ccccggtggt gatgccgcag cgcctcgacc 2760 aaagagagtg cggtttgcgg tgtttgaaag tggacgttct agcaaggtgg cagaacgaga 2820 tgaaggacgt ggagtgagct ctacagcatc tggatgtgat cgttctagca aggtggcaga 2880 acgtgatgag gaacgtgtca atggacatga ggcagaccac ctgcgaggtg agtgcgtgcc 2940 agggagaaag aggaaacgca gcagtgggcg gcacaaggga ccggctgctg acgagacgag 3000 ggctctacca gggagtcaag aggtggaaga ggtggacagc aggtcatcgg ctgctgagcg 3060 ggccgactcg gacagccaag tgtcgagtga tgctgcgagt gtggggcgtc tatcaacgcc 3120 tccttgcaca gcacttcgtg agtacacagg cccgagaggc actcgccata aagaccctcc 3180 agtgacacgg agcggtcggg taagtaaacc gcccacgtgg ttcggtgact acgtctacat 3240 tgcctacgaa aatacaaatc cagatgatga tgtgaactcg ttgcctgctg gatggaggaa 3300 agcacgagct gagttgcaac gtgctatggc gaacgagttg atccttgcat ggtgggagga 3360 ctattgctgc atgagtactg gcgagtttga agagccagat actttcggtg acgctatgga 3420 gagtgagcac tcattgcaat ggaaaaatgc agctgatgat gagtttgatt cgttgatgaa 3480 gaacgatacc tgggagttgg tgccgcgtga gaagcacgtg aaagtgctgc agaatcgctg 3540 gatctttcgc gtcaagtatc tagcgaacgg agagatcgaa agattccagg cgaggctcgt 3600 gatcaagggc ttcatgcaga ttgatggtat cgactaccta gaggtgtact cgcctgttgt 3660 gaggctggag acactgcgtg ttctcttgac actggcggct gtctgggatt atgaagtgca 3720 tcagatggat gtcactactg ctttcttgaa tggggcgatt gacgtggagg tctgtctgga 3780 gcagcctgaa ggctacaaag tgaaaggcaa agaggactgg gtgtgcagat tgaagaagag 3840 cctgtacggc ttgaagcagg cgcccagagt gtggtttcag ctgctcaagt cgttcttgga 3900 ggagcagggc ttcacgatgc tgcagtcgga ggcctgcgtg gctgttaaag taattgatgg 3960 gcagttggtc ttcatccctc tctatgttga tgatctgatt ttgtttgctc cgtcgatgga 4020 gctcatcaac aagatgaaga tgttcgagga ccggtttgcg atgaaggatc tcggggagtt 4080 acactacatt ctagactggg agatcacgcg gaaccgggcc gagagaacga tgttcattgg 4140 tcagcagaag tatgccgaga ccgtgctcaa gcggttcaac atgcaggact gcaatggctg 4200 caagacgccg agcacggcgg atctgaagct gagcaaggcc atgtgtccga ccgaaaacga 4260 tgaaaggcaa ctgatgagat cgaagccata tcgtgctgtg gttggcagcc tgatgtacct 4320 gatgctcggt acccggcccg atctggccta cctagttaga gagtgcagtc agttcttgga 4380 aaacccaggt ctgttgcatt ggagagctgc aaaacgtgga ttgcgctacc tgaaagacac 4440 agcggactga ggggtccagc ttggtggcct agcgtggtca gatcaaaagc tggatgatca 4500 tctgagagca tacgcagatg cggattttgc aaatcgagtt gatgatcgaa agtctgttgc 4560 aggctacgtg actcaatttt gtgggagcat catttcgtgg agcagccaga cggagaagac 4620 cgtcccgctg cacacgaccg aggccgaata tatggctctt agtctactgg tgcaggaggt 4680 ggtgcacttg cgccaaatgc tgaaggagct gcaggtgcag caaattcagc catcccaagt 4740 ctttgttgac aacgaaagtg caaagaagct tgccagcaac cctgtgtttc attctcgggc 4800 caagcacatc gatgtgcgcc accacttcgt gcgtgagcgc atcgatatga aggaaattga 4860 cgtgcttcgg gtggcaggag ttgataacgt ggccgatgcg tttacaaagc cattggcacg 4920 tccggcattt gaaaaacaca gagctgcaat gggattatta ccaagggcaa gatttggaga 4980 tgcaagttga tgggaatccg taggtggggc 5010 // ID Gypsy-17_PIT-I repbase; DNA; PLN; 7341 BP. XX AC AATU01002779; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PIT_; KW Gypsy-17_PIT-LTR; Gypsy-17_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7341 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002779; Positions 31850 24510. XX CC 'ATTC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS join(124..2457,2461..7341) FT /product="Gypsy-17_PIT-I_1p" FT /translation="MSFRDLSDALGEEALPFSEVPEEEEAARVEGNAGENA FT QREPPIGEREHVEAERGTRGQDQQAAEGYEAQAAQGDDDNLFDGALASPRT FT RGWITSLLETPRGRAQFQDLLLQLASQPAPSELTGAASHPRAEPTATAPES FT RRGVAFTFDPARPSLGPVEGEGRKVTAAAGPQGPGLGRIEEERFRDARTAA FT PANVSTGGARVGPTPSTVTSTVGSGTRDTDSTFQALLIDSFQQALRGLSLN FT DASGGLRQARAPPSSMEERRSLEAANPRMTPGTVAATPTGMPMAAIPSYGG FT VSIQTPQPGWSSRGAGSPLPGAFYSPFQPPVTPTSGWSAHGTRPAWTSAPV FT ASEAPTSATWEAGGRHATSGGEFRGHAGTRVPSYDDRQSGRHPTSSGLPYE FT PIAYSIGGPDGRYGTATIRDRSYRNAPNIGIPTELRNAVKVIVPFYSDTAT FT SERAAAFWRSFEKCTYGMDDQMRFTAFEQCLKGKVGQEWWYNSRIDSFETL FT RVRFHNRFICQTPTQLWKRLKDAKRNRGESAEEWGDRISTMCEALNYSEPR FT MQFEFFMDGLRNKQMRAVLNGSMVAFIPEACALLLYKNQHLPVEEEDELAG FT EETESTRANAQASTQSQVLQQLQLMNQIMLNNQQGSGTQLGHINVVAPSVP FT QAPQTSSVPASNGNASLGPLNVRQGSDTRTTEGEIVCGRCERKGCSRENCP FT RGRGRCNHCQRDGHYSMECNWPKPASNNRNGGRRGLECFFCMQKGHSVSNC FT PELAQLRSLAGSASSTRAATPTGTSQQRGQEGGEGSVAPSSCLVGDTQRAE FT GSQEVKIAVEPKRALGSKETSERARSVLIASVTVGREQENVGSSRDEKEQG FT SESTDGATERSTVTLIGSVEATERCTLPKGKVDGTTTRSRGTPGVGETKKV FT FFAEAEEDSEDSRTVEGATVPANSSTRYKDAIESNVDEAASLKARQVVAAV FT GTGNDEDKVTEAREEEKEGHNEGMNSASRYDRLFSDKELDMLELGEDSGVK FT SEPEEYAKELEDRLFPLDDERILERAKRNAAGLGKPTLADMSVTPGIPEAV FT LERTRAVSTGDIWTPEYWLDWYADALEKSKVAKRANRYFKEVEARSSQLPT FT VNVVAVSEGECDETAEPDKMVEREFERNVCVRLDEATIPVSRDCEDSGGTL FT LSRWRAEARRLVYELVKQDWVAKRSLPSKTTEPPGERGGEGEDDPRRDAAT FT GNVLDEGALRSHLCEVGGTLSEAFLNCALVWARSYFEAEVGAICDKLRDRA FT PASPKITGPSGATVTETLRMGATPGLPIKTLEVKKLEIAEEEPEIYFVDAK FT RAPRPRRRSGLCERSYEVLDDDDSVVPEGKRIICSIGGIQALSDGYIDCCP FT CEMLADTGAMASLVDKRVLKRLGRASEPLRPYTGSLDGVTGHGVRVSGVID FT LPVTLGTLEKTLPFVVTDRLFVDAILGTDTLRAFRAVIDLEEQNMTLKETG FT DVVPLGETRIEETYAATVSSTVRLKPGSQALVRSSVRGAVKGQSVVLVEGV FT PGSDKSLQVARTLCTVSEGSVLVEVCNASTEEVEIKSGTHVASVTIAPESA FT FVVGVPESDGARESLSDVLSRSTGHATGPAGTIEAEMASAMNDKDEDDFVV FT DFQDSSLGAEQRRLFAEMLKGLRDLFVETSKKPGRTELLQFHIDTGTHTPI FT KQPPYRVSKAEGDVMESEIQEYLDLGLIRPSTSPWASPVLMIRKSDGGIRF FT CIDYRKLNAVTVKDSYPMPLIDDILDVLGNAKLFSTMDIASGYWNVPMEPG FT SVEKTAFTSKYGLYEWLVMPFGLCNAVPAFERLMESVLVDLKWRTCLVYLD FT DCVVFSEDFPTHLIQVRQILERFRAAGFITEDEEVSLGTGPGGVSRPYCDP FT YWDIAQPGKAKAVMNIERPHDLHTVRAFLGLTSYFRRYIPGFAAIAAPLER FT LKQKEVEFRWNDDCEAAFRQLQRALVKPPILVYPDFKKRFKLYVDSSHLAV FT GACLMQEIDRRDRAIAFASKMLVGSQRNWINKTSGTTEIECWGIVWATRKF FT RCYLDHAEFDLYTDHQALTWIFGEETRTSNAKLARWAMELSQLRFKVYHKP FT GTSMGHADGLSRLYHRPDASVVSVIRMTDLLNDGDDAPPAQDGTVTPLGTL FT ETNTGDGLAQVGEQTGTAAPGDDSVTEPAVVTEPLTQVEQEEDLQEGAPLT FT NLSPIDVFGLDYDKFVEEQERVPWMRALRAFLKDGALAIDPQLRVIGSYLL FT VSLLLAAVLYMPRLACEGVEGVLCGWMGVALLVLLMDIYWDFASECVFWNA FT AVVSIGAYSHARRLYSKSRSSEVTSQGVKRDWDGLARRMARREERERASVV FT RLRGVCDSGVNSRDEALEGGVPVGKDFSVPSSSNVAPSGTLTGGVPIRHPA FT GTVQPGSGESARRGHRVEVGEN" XX SQ Sequence 7341 BP; 1769 A; 1788 C; 2330 G; 1454 T; 0 other; atttggtgga gaagcagggt atcttcttac cgaaaaatcg taggaacgta agagcggagg 60 agagcgctac aagacttcag gcaatggagc gcctgaacaa gaaggaggga cagtaggtac 120 gctatgagct ttcgcgacct gtccgacgcg ttgggcgaag aagcgctgcc cttttccgaa 180 gtcccagagg aagaagaagc ggcgcgtgtg gaaggaaatg cgggtgagaa cgcgcaaaga 240 gaacctccta tcggagagag agaacacgtc gaagcggaac gcggaacgcg aggtcaagac 300 caacaagcgg cagaaggcta cgaggcacag gcggctcaag gtgacgatga caatctgttc 360 gacggggctc tcgcgtctcc ccgaacgaga gggtggatta cctctctgct tgagaccccc 420 agaggtcggg ctcagtttca agacctcttg ctgcagctcg ccagccaacc tgctcctagt 480 gaactgaccg gcgcagcatc ccacccgcga gcagaaccta cggctacggc tccagaaagt 540 cgacggggcg tggcgttcac atttgaccca gcccgccctt ccttgggacc tgttgaagga 600 gaagggagga aagtgacggc tgccgctggt ccgcaaggac caggattggg aaggatcgag 660 gaggaacgct tcagggacgc aaggaccgcg gccccagcta acgtctcgac tggaggagcg 720 agggtgggcc ctactccgtc caccgtgaca tcgactgttg gaagtggaac gcgagacaca 780 gactcgacct tccaagcgct cttaatcgac tccttccaac aagcgctccg tggcctctcg 840 ctgaacgatg cgtcgggagg gttgcgccaa gcacgagctc cgccctcgtc aatggaagag 900 cgccggagcc tagaggccgc gaacccaagg atgactccgg gaacggtagc tgcgactccg 960 acagggatgc cgatggcggc gatcccttcg tatggaggcg tttcaatcca aacgcctcag 1020 cctggctgga gcagtcgagg ggcaggatcg cctctgcccg gggcgttcta ctctcctttt 1080 caacctcctg tgacgcctac gtctggatgg agcgcccatg ggacgcgacc cgcctggacc 1140 tcggcaccgg tagcctcgga ggctccaacg tctgctacct gggaggcggg tgggcgacat 1200 gccacctctg gcggggagtt tcgcgggcac gctggtacta gagtaccgag ctacgacgac 1260 agacagagtg ggaggcaccc gacgagctca ggactacctt acgagccgat tgcctactct 1320 atcggtggcc cggatggccg atatggaacg gcaacgatca gagaccgttc gtatcggaac 1380 gcccctaaca ttgggattcc caccgagttg aggaacgccg taaaggtcat cgttcctttt 1440 tactctgaca cggccacgag cgagagagcc gccgcttttt ggcgttcctt cgagaagtgc 1500 acctacggca tggacgacca gatgcgattt acggccttcg agcaatgcct gaaaggcaaa 1560 gtggggcagg aatggtggta caactcgagg atcgatagct ttgagacgtt aagggtgcgt 1620 tttcacaatc gctttatctg tcagacgccg acgcaactct ggaagcgact caaggacgct 1680 aagagaaacc gcggcgagtc ggccgaagaa tggggcgacc gaatttcgac gatgtgcgaa 1740 gctctaaact actccgagcc ccgcatgcaa ttcgagttct tcatggacgg gttgcgcaac 1800 aagcagatga gagcagttct gaatggtagt atggtagcgt tcattccgga agcgtgtgcg 1860 ttactgctgt acaagaatca gcacttgccg gtcgaagaag aggacgagct cgccggagag 1920 gaaacggagt caacgagagc caacgctcag gcgtctactc agtcgcaagt gcttcagcaa 1980 ctgcaattga tgaaccaaat catgttgaac aaccaacagg gctctggaac gcagcttgga 2040 cacattaacg tcgtggctcc gagtgtccct caagcgccac agacttccag cgtcccagct 2100 tcaaacggga acgctagtct tggaccgctg aatgtccgac agggatcgga cacgcgaacg 2160 actgaaggcg agatcgtatg cggtcgttgc gagcgaaagg gttgtagtag ggagaactgt 2220 ccgcgaggca gagggcgctg caatcactgc cagcgagacg gacattattc gatggagtgt 2280 aactggccca agccagctag caataatcgg aatggagggc gtcgtggact agagtgcttc 2340 ttctgcatgc aaaagggaca ctcggtgtcg aattgcccag aactggctca gcttcgtagt 2400 ctggcgggga gcgccagctc gacgagagca gccactccca ccggaacgtc ccagcaatga 2460 agggggcaag agggagggga aggaagtgtc gctccttcct cttgcctagt tggcgacaca 2520 cagagggctg aaggttcaca ggaagtgaag attgcggtgg aacctaagag ggctctcggt 2580 agcaaggaga ctagtgaacg cgctcggagc gttctcattg cgagtgtgac agttggaaga 2640 gaacaggaaa acgtgggtag ctcgagggac gagaaggaac aagggagcga gagcacggat 2700 ggagcaacgg aacgctccac cgtgacgcta atcggcagtg tagaggcaac ggaacgctgt 2760 actttgccga aggggaaagt cgacggaact acgacgcggt ccagagggac tccaggcgtc 2820 ggagagacga aaaaggtatt cttcgctgaa gcagaggaag actcagagga tagcagaaca 2880 gtagagggtg caacggttcc ggctaacagc tctacgaggt acaaggatgc tatcgagtcg 2940 aatgtggatg aggctgctag cctcaaggca cgccaagttg tggctgccgt gggaactggg 3000 aacgatgagg acaaggtgac ggaagcgaga gaagaagaga aagaaggaca taacgaagga 3060 atgaattctg ccagtcgcta tgaccgtttg ttctctgaca aggagctgga tatgctcgaa 3120 ctcggtgaag actcgggcgt gaaaagtgaa cccgaagaat atgcgaaaga actggaagat 3180 cgtttgttcc cgctggacga cgagaggata ctagagcgtg ccaagcggaa cgctgctgga 3240 ctaggaaagc cgactctggc ggatatgagc gtgacacctg gaataccgga agctgtcttg 3300 gaacgcacac gggccgtctc aactggagat atatggacgc cagagtactg gctggattgg 3360 tatgccgacg cgttagagaa gtcgaaggta gcgaagcgtg ccaatcgata cttcaaggag 3420 gtggaagcaa ggagctcgca actgccgacg gtcaacgtgg tcgctgtaag cgagggcgag 3480 tgcgatgaga ctgcagagcc ggacaagatg gtagaacgag agttcgaaag gaacgtgtgc 3540 gtcagactgg acgaagcgac catcccggta tctcgagact gtgaagacag tggcgggacg 3600 ctgctgtctc gatggcgtgc agaggctcga aggctggtgt acgaactcgt gaagcaggat 3660 tgggttgcaa agagaagtct cccttcgaag acaacggagc ctccaggaga gagaggtggc 3720 gagggcgagg atgaccctcg gcgtgacgcc gcgactggga acgtcctgga cgaaggggcg 3780 ctccgaagcc acctttgtga agttggggga acgctaagcg aagcgttcct aaattgcgca 3840 ctagtttggg ctagaagtta ttttgaggcg gaggtcggcg ctatttgcga caagttacgt 3900 gacagggcgc ctgcgtcacc aaaaataact ggacccagtg gggcgaccgt tacagaaact 3960 ctgcgaatgg gcgcgacgcc tggcttgcca atcaaaacgc tggaagttaa aaagctcgaa 4020 atagccgaag aggagccaga gatctatttc gtggacgcga agagagcccc ccgtcctcgg 4080 agacgatctg gcctgtgcga gcggagctac gaagtcttag atgatgatga tagtgtggtg 4140 cccgaaggca aacgaattat atgcagtatt ggagggatac aagctctatc ggacggctac 4200 attgactgtt gcccctgcga gatgttggcc gacaccggcg ctatggctag tttggtcgac 4260 aaacgcgtgt tgaaacgact cggaagggct tccgagccgc ttcgaccata cacaggaagt 4320 ttagatggcg tgacgggcca tggagttcgt gtaagtggcg taatcgacct gcctgtgact 4380 ctgggaacgc tggagaagac gctccctttc gtagtgaccg accgtttatt cgtggacgct 4440 attcttggaa cggatacgct gcgagcgttc cgagcggtga tcgacttgga ggaacaaaat 4500 atgacgctaa aagagaccgg tgatgtggtc ccactgggcg agacaaggat cgaagagacc 4560 tacgcagcca cagtatcgtc gacggtccgt ctgaagcccg ggagccaagc gttagtaagg 4620 tcgagcgtca gaggagcagt gaagggtcag tccgtcgtct tagtggaggg cgttcccgga 4680 tcggataagt ccctacaagt cgccagaacg ctgtgcacgg tgtctgaagg ctctgtacta 4740 gtcgaggtct gtaacgcgtc gacagaggag gtcgagatta agtcgggaac tcacgtcgcc 4800 tccgtgacga tcgctccaga gtctgctttt gtggtaggcg ttcccgaatc tgacggagca 4860 cgggagagcc tcagtgatgt cctaagtcgt tcgactgggc acgctactgg cccggcggga 4920 acgattgagg ccgagatggc ctcagccatg aacgacaagg acgaggacga tttcgtggtg 4980 gactttcagg actcttcact tggggcggaa cagaggcgtc tctttgctga aatgctgaag 5040 ggcctgaggg acctcttcgt cgagacctcc aaaaaacccg gacggacaga gcttttacag 5100 ttccacatcg acacgggaac gcacacacct atcaagcaac ctccttaccg agtgtctaag 5160 gcagagggcg acgtgatgga atccgaaatc caggagtatc tcgacttggg cctaatacgg 5220 ccctcgacta gcccttgggc cagtcctgta ctgatgatac gcaagtctga tggaggaatc 5280 cggttttgca tcgactaccg aaagctgaac gctgtcacgg taaaggacag ctacccgatg 5340 ccgttaatcg acgacatcct agacgtgctt gggaacgcta agcttttctc gactatggat 5400 attgcgtcgg gatactggaa cgttcccatg gagcctggta gtgtggagaa gacagctttc 5460 acgagcaagt atgggctgta cgaatggcta gtcatgcctt tcgggctatg taatgctgtc 5520 cctgcgttcg aacgacttat ggagagcgta ctggttgatt tgaagtggcg aacgtgtctg 5580 gtttacctag atgattgtgt cgtgttcagc gaggactttc caacccatct gattcaagtg 5640 cgtcagattt tggaacgctt tcgagcagct ggcttcataa ctgaagatga agaagtgtca 5700 ttggggacgg gaccaggtgg cgtttctagg ccatattgtg acccctactg ggatattgcc 5760 caacccggga aagcgaaagc agtgatgaac atagagagac cccacgactt gcatacagtg 5820 cgagcgttcc tcggcttgac tagctacttt aggcgttata tacccggctt cgcggcgatc 5880 gctgctccgt tggaacgctt aaagcagaag gaggtggagt tccgatggaa cgacgactgc 5940 gaggccgcgt tccgtcagct gcaacgcgct ctggtgaagc ccccaatcct cgtttatccg 6000 gacttcaaga aaaggttcaa actgtacgtg gactcttctc acttagcggt tggagcgtgc 6060 ctcatgcagg agatcgatag gcgtgacaga gctatcgcct ttgcgagtaa gatgttggtc 6120 ggatctcaga gaaattggat taacaagaca agtggcacaa cggagataga gtgctgggga 6180 atagtgtggg ctacgcgtaa atttcgttgc tacctggatc atgcggaatt tgacttgtac 6240 actgatcatc aagcgctaac gtggatattt ggagaagaaa cccgaacgtc caacgctaag 6300 ttggcacggt gggcgatgga gttatcacag ttaaggttca aggtatatca taaacctggg 6360 acgtctatgg gccatgctga tggtttgtcg aggctgtatc accgacctga tgcctcggtt 6420 gtaagtgtca ttcgaatgac tgatctccta aacgacggag acgacgctcc tcctgctcaa 6480 gacggaacgg taactcctct tggaacgctg gagactaaca cgggcgacgg tctagcccaa 6540 gtcggggagc agactggaac ggctgctccc ggggatgact cggttactga acctgcggtg 6600 gtgacggaac ctctaacgca agtggagcaa gaagaagact tgcaggaggg agccccgctt 6660 acaaacctct cgcccatcga cgtttttggt ttggattacg acaagtttgt ggaagagcag 6720 gagcgcgtgc catggatgcg agcactgaga gcgttcctga aggacggagc gttagctatc 6780 gacccacaac ttcgagtgat tggctcttac ctgttggtgt cgctgctact ggctgcagta 6840 ctttacatgc ctcggctggc gtgtgaaggt gtcgaaggcg tgttgtgtgg atggatgggt 6900 gtcgctttgc tggtgctact aatggatatc tactgggatt ttgcgagtga atgtgtcttt 6960 tggaacgctg ctgttgtctc tatcggcgcc tacagccatg ctcgacgcct gtatagcaag 7020 tctcgatcga gtgaagtaac tagtcaaggt gttaagcgcg attgggatgg tctggcccgg 7080 cggatggcgc gccgagaaga gagagaacgt gccagtgtcg tgcgattacg gggagtgtgt 7140 gacagcggag tgaattcgag ggacgaagcc ctggaaggtg gcgttcccgt tggcaaggat 7200 ttctctgtcc cttcgtcttc gaatgtcgcc cccagtggaa cgcttacggg aggcgttccc 7260 attcgtcatc cggccggtac cgtgcagcct ggctcgggcg aatctgctcg gcgagggcac 7320 cgagtcgaag tcggggagaa t 7341 // ID TSE1_I repbase; DNA; PLN; 4843 BP. XX AC AJ439547; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Saccharomyces exiguus retrotransposon TSE1_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TSE1_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Kazachstania exigua OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kazachstania. XX RN [1] RP 1-4843 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439547; Positions 425 5267. XX SQ Sequence 4843 BP; 1762 A; 877 C; 810 G; 1394 T; 0 other; tggtagcgcc gcgaaaactt cgatggataa caatccattg aaaggttctc caagaacacc 60 gatcccaggt agtcaggaac caattaggaa cccaggtgaa actgttaatc caaaagctac 120 tcctatctat aatgaagatc ctagaatttt ttatcaaaaa tttggttctc caatgtttgt 180 caacccagct atgttcgcta atccatttca acaagcggaa tttatgtatc aacagattcc 240 acattgggct atgccaaaca tgttgggaca ccaacaacta cctcaacact ttacaggtgg 300 gcgtattcct tctgcatcat cagaaacagt aaatgaaagc gtaaataaca atcaatttac 360 tcaacaagaa attgctccaa ctgctactct aaaccgaatc aatgatcaat cagagtttag 420 tacatggatc aagaacttta ttatcttttt aagagaacgt aaacttgaac atgttatccc 480 acctgaaaat ggtcaatcca ccaattctgc tactgacgaa gaaaagaaat tcatcactga 540 tgtctttaaa tactttgtat ctccaaaagc ttatcctgct tggttctcca agcaatcaca 600 agaacgtttc attgaacttt atgatgtgat tgaaaacgca ctatacaagg aaacaggata 660 tgataacgaa agatctattg ctaaggagtt aaactccatt tactatgatg gtaaaactga 720 tcctttcttt tttcagaaaa aattgaataa cttacgtaag aaaggtttag aaatcggggt 780 tacaactact gatacaattc tatgtgaaag aattgtcgat catctttcag gtcctttcaa 840 accaattgct gataattacg atcgtaatta tacaaatatt tcattaactg atttattaga 900 tgaaattcaa agagtgtaca ataggcaaat cagggataaa acgtatacaa ataaaagcaa 960 ttcaaattca actgactata aacctacaac caagtcaact ctagaaaaac aagtaattaa 1020 caaatcaact caaaaagctg cttctaaagg tcgcaacaag aaactgttcc atattcaaga 1080 cgttgactca tctattgaag atcttaggca attcagaaaa taatttagat aatttattga 1140 ttgtagactc aggtgcagag atatccgtta tccgcgatat atcttttcta acaggaatta 1200 accataaccc aacagaccga ctattaggtg ctggggacca agaattgaag gttaatgctg 1260 ctggtactct tcgtttaaac ttcggtaaga cggtaattaa aatcaaagct ttagtatctc 1320 cagattcaac atgtaatcta atttcattac atgatttaga aaaagcaggt ttaattatcg 1380 atctacagaa ccgtattgtt ttaaacaaga atcataaaaa aattggtaac atcattgatt 1440 gtggacgtta catatgtcta ccgttaaaac taattactcc aaacaaaggt attcacaaag 1500 ttaacaatat ttcaaaaaaa ctacaaatgg cttttctaca tcgtctcttt ggccatatca 1560 atattaaaac aattaaagag tcaatatcta acaaactcat caaaaacatc tcgttaaatg 1620 acgtcgactg gtctcacatc gataaatttc aatgtaccga ttgtatgaaa ggtaaggcaa 1680 ccaaacacaa acacatagtt ggttccagat taaaatacca aaacaattac ggtccattcc 1740 aatacattca ttcagatcta ttcggccccg ttactggtgt ttctgctact tctccttctt 1800 attttatttc atttacggat gaatgcacta gattccgttg ggtataccct ttgcgcacca 1860 aatctgctga atcgatttat aacatattcg atcatttggt aagacaaatc gatactcaat 1920 ttaatacaaa gattttatca ttccatatgg accgtggatc ggaatataca aataccgaaa 1980 tgcaaatgtt ttttcaaaaa catggtataa tcccgattta tagttctact acagactcgt 2040 cttcaaatgg tgtggctgaa cgtagcaatc taacatttct aaacgattgc cgtacgttac 2100 tggtatctag tcatcttcca aatagtttat ggtttaatgc cgttgaattt gctactctta 2160 tgagaaacgc ttttatcaac tctacaaata aaatgtctcc tcgcggaaaa gctggtctcg 2220 ccggtttaga tgcaagtaca attttaccat tcggtcaaga ggttgtggta cataatcata 2280 aggtcaagaa caagttacat ccaagaggta ttaccggata tgcactttcc ccatcaaagg 2340 aatcacatgg atacttgatt tacctacctt ccacaaaaca gattattgat acttctaact 2400 atgtgttggt aaaaaacttg gctaacaaca ctactgccga taattcgatc tttgatgacc 2460 taattacaat ctacgaacaa gacatcgata cttccatctt agatggcact ccaatagact 2520 ctacttataa taataacaat gctgctttgg gtggcactgg tactggtaat ggcttggaag 2580 gttttgatga ttacaacaat gatgctttag gtggtactgg taatggtaat ggtaatggat 2640 tggaaggtat tgatgattac atcaagactg ctttgggtgg ttctggtcct ggtaatggta 2700 atggattgga agttattgat gataataacg agctacttca ttttgacgat gaaaattcgc 2760 ccctaaatga atccaacgat aatattccac ttgatgctct tgaggatatt tcaaatggtg 2820 ataacagcca agaaggaact gctattgatg aatttacaaa ttttactgac gactctcagg 2880 aagctgactt acatccgtta gattcaggag agacaaatca taactcaact ccaattgaca 2940 acacagctgc aaatgacact acaatagtaa ctgacgaaca atctcaaatc ttacctagtt 3000 cgggtggtag aaagaaaatt gaaagtatgc ttaaaaagaa cggcaactca ttatccactt 3060 ttcaaaatcc aagaaaaaga gtaagaagta atataactga caaaagtgaa actagaaaag 3120 atttgcaaga agagaaagat tataaggaaa ctggtattcg accaaagaaa ctaaggcgta 3180 gagtaaacta catcaaggct atcaagcatg tcatgcaaac aaaacaacta aatccgtcgc 3240 ttaactactt tgatgctatc gttcataata aatcaacaac tgaaagcaaa gaatacaaag 3300 ctgcttatga taaagaaatc aatcaactca tgaaaatgaa cacatgggat aacaatcaac 3360 tttatgacgc caaggatata ccatcaaaga aaataatcaa ttcaatgttt attttcacca 3420 ctaaaagaga tggtacaaga aaatgtaggt ttgttgctag aggtgatcaa caacatccaa 3480 gtacttatga cgaaaatgca attgcaaaca cagtacatca ctatgcattg atgacatcac 3540 tctcattagc tctagattct aagaaataca ttgtgcaatt agatatctct tctgcttatc 3600 tttatgctga tctatcagaa gaactataca ttagaactcc tccacacatg tccaaaagag 3660 gtaaagtaat gagactaaac aaatcattat atggcttaaa acaatcaggt gctaattggt 3720 acaacacaat caaggaatat ttgatcaaga agtgtaaact acaagaggtt aaaggttggt 3780 catgtgtttt taggaacaaa gacctaacag tttgtttatt cgttgatgat atggtggtaa 3840 cttcttcaaa ccgtgaatta gcaaataaat tcattgacac attgaaaaag aagtttgaaa 3900 caaaggttgt aaatactggt gagatagata accaaggtta tgcttattat gacattctag 3960 gtttagaaat agaatacaag ttcggttcaa agatgaagat tggtatggaa aagtctctac 4020 aatcaaagct aactacatta gacgtcaatc taaatcattc aggcaaaatg cttaaagctc 4080 cagcccctcc aggtactgtg ataactaaat gtgaacctga aacgactgag gatgaataca 4140 agaaagatgt aaaatggtta caaaggataa tcggtttggc ttcatatgtg gcttacaaat 4200 acagatttga tctactattc tatgtcaaca cattggcaca acatactctt tttccaagca 4260 aacaggtaaa aaggttagct acattgatgg tacaatactt atgggatact aaacataaga 4320 aactaatttg gtatgctaag gatacaaatc aaaatgatct tcatgccatt actgatgctg 4380 cattcgctaa cttagatgga tatggttctc aagtcggcta ctttataagg ctcaacaata 4440 aaattattgg tggttcttcg tccagagcaa agttaacttg tacatcatct actgaagctg 4500 aaatatatgc tgttagtcgt gctataccaa tgctagacag tttaaaatta ttaatcccaa 4560 agataagtcc tactaaatta aatgccgaaa taaaatcaga cagcatgtca acaataaaca 4620 ttgcgacatc tgatgacgac aaaaaattca gaaacagatt cttcggtacc aaggcaatga 4680 gaatcaggga tgaagtacaa cagcttgggt tgaatataaa atatattaac acagaagaga 4740 acactgctga cgtcttaact aaacctttat catacaagag atttttaaag ctcacagctg 4800 attggataag ctagaatatc aaacattcaa gatataggtg gta 4843 // ID Gypsy-39_PIT-I repbase; DNA; PLN; 4740 BP. XX AC AATU01009731; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_PIT_; KW Gypsy-39_PIT-LTR; Gypsy-39_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4740 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009731; Positions 18581 23320. XX CC Positions [3655-4089] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1020..2675 FT /product="Gypsy-39_PIT-I_2p" FT /translation="MEELPEERSVIGTSVCAMELRLDKVQVEGNDLLFVEA FT LVNGRSLKMLVDSGATHSIVRRDLLVSPTGARLEKIQARDFEGKLSTTSFR FT KFTVNMTVENRVCPVKLVEWPLRQDFDGILGQSWLSRENPDIDWSARTVSW FT RRRTRRNLPREWTPPPSNEPTIAYVDAEEFQRNLKSGMYAEVYHLDVVADN FT GKVKPDADVSSLIREFADSLREELPEGLPPERDIEHSVQLKQGAVPSSRPP FT FRHAHVEKAALKNFVDKLLHKKWIERSSSPWVSNIFAVPKRDPVTGQLPTK FT IQWVRGGDPSKPVRWVIDYRYVNSATNIPRIPIPRIDEIFDRLAGAHVFTL FT IDLASGYHQMRMAFDSRQFTASHAGSEIYQWCVAPMGLAGMPGTWSRLMRR FT IFENKDLAGFVVVYLDDICVFSKNRTEHLQHLRRVLEILRSEQLYAKPSKC FT HFAQDEIRFLGHIVSGTGVRVDPDKTAAIANWARPQNVKDLQRFLGLSGYY FT RRFVRSYADLVLPLSNLLKSTTEWKWGPDQEFAFNTIKKTLISAPILRLPD FT MNLPF" FT CDS 3673..4725 FT /product="Gypsy-39_PIT-I_1p" FT /translation="MSTFNRPCYIPTTKDVDAKTTARLFFDHVVRYYSLPE FT STVSDRDPRFTSEFWCELMTIMQVKQRMTVSRRAQADGRSERQIRTLEDSL FT RGVVSHYGDNWVKMLPTVEYAHATLVSTSTRISLFEVDCGRKPRRPIVVAT FT SGNLAQNMTRSRKETIQLAQRHLRLAQERQALYYNRGRQQVQLKEGDLVYV FT DSRVMSSELGQPDYDPGRDPNRNKLLPKWYGPFPVEKRIGENAYRVALPHR FT YLARGRHATFNVDQLKLSLDVPEIFRGREIAKSAPRLYDEDGERVYVIRAL FT LAQRRRGGRKQYFCSWVDLPESENSWEFENDISHVSHWNKLLEAFKPKRRR FT ASSARRRR" XX SQ Sequence 4740 BP; 1136 A; 1137 C; 1279 G; 1188 T; 0 other; ttataattgg tagcacttgt tggtccattt caactcagct gtgcccgctg gacccgcttc 60 ctgtctggat aagtctccgt attttcctgg tcaagaatgg aagaacaaaa ccccgtcatg 120 acgctgttgg aaggcctaac acaggcgatt cacaaactct ctcacacggt tgcaacgcag 180 aacaatgatt ttcggtcggc cgttatggat caactccagc accaacagtc gagtcgagaa 240 tttaagattg agggtgcctc gatgccaaaa ttctacggca agccacaaga aagcgtggac 300 gagttcatat ttgaggccaa gttgttcatg aacggcaaga acatcgacta tgggcatccc 360 gccaaccaag tgcgtgtggt tgctatgctg gcctgtaacc tacgcgaaag cgcggcctcg 420 tggtaccaca accgcatcat gatcgacaag gagcccatcg gctcaattga cgagtttgaa 480 gctgcgctac gtgatgagtt tcttccaccc gatcaacagc atcgtctgcg agcagcgtta 540 cgttgctgca agcagacctc agacgtcgag gaatatgtat cgcgttttcg caaaattatc 600 actcaggttc gcgatatgtc tgctcttgac aaggtggacc acttcatcat gggcttgaag 660 cctgagacgc gtaaggaggt tgactacctc aactgcaatt cgctcaaggc cgcagtctca 720 gcagcccaag cctatgaacg agcgcatttt ggtggaggtc gtcggtccca tgcagctcga 780 cgcgacgcgc cagagcccat ggacatttcc caagtaagtt cccgcccgaa cctcgagcag 840 tgtcgccgcc aacgactttg cttttactgt cgcgaagctg gacatcgcat ttcggactgt 900 ccgaagaagc gtcagggaaa cgacggagct caacggatgt aaatggagta tccgttgggc 960 agtgtgaatc tgaatctcca tgcgcaaagt ttaaaaatga aggtctggtc gaagtcgaga 1020 tggaagagct accagaagaa cgaagtgtga ttggcacgtc tgtctgcgcg atggagctcc 1080 gcttggataa ggtgcaagtg gaaggtaacg accttctatt tgttgaagcc ctcgtgaacg 1140 ggcgctctct gaaaatgtta gttgactctg gtgcaacgca tagtattgta cgacgcgatc 1200 tgctggtgtc tcccactggg gctcggctgg aaaaaattca ggctcgcgac tttgaaggta 1260 agctatcgac aacttccttc cggaagttta ctgtaaatat gacggtggaa aaccgtgtgt 1320 gcccagtcaa gctggtagag tggccattac ggcaagattt tgatggcatt cttgggcagt 1380 catggctttc ccgtgaaaat cctgacatcg actggtctgc ccggactgtg tcatggcgac 1440 gtcgtactcg tcgtaattta cctcgagaat ggacaccacc tcctagcaac gagcctacca 1500 tcgcgtacgt tgatgccgag gagttccaac gtaatctgaa gtcgggaatg tacgctgaag 1560 tgtaccatct cgatgttgtg gcagataatg gcaaggtgaa gcctgatgct gatgtttcca 1620 gcttgattcg agaatttgca gactcactac gcgaagaact tcccgaaggg ctgcctccgg 1680 agcgcgatat cgagcactct gttcagctga agcaaggtgc agttccgtct tccaggcctc 1740 cgtttcggca tgcacacgtt gagaaagcag ccttgaagaa ttttgtcgac aaacttttgc 1800 ataagaagtg gattgaacgc agctcatctc cttgggtctc aaatattttt gctgttccta 1860 aacgtgatcc ggtgacgggt caattgccga cgaagataca gtgggtacgc ggtggtgatc 1920 cgtcgaaacc tgtgcggtgg gttatcgatt atcggtacgt taattcggcc accaacattc 1980 cacgcattcc cattcccagg atcgatgaga tctttgatcg cctggctgga gctcatgtgt 2040 tcacgttgat tgacttggcc tcggggtatc atcagatgcg gatggcattt gactcgcgtc 2100 agttcactgc ttctcatgct ggatcagaga tttaccaatg gtgtgtcgct cccatgggcc 2160 tggcagggat gcctggaaca tggtcacgtt taatgcgtcg aatcttcgag aacaaggacc 2220 tcgccgggtt tgttgtcgtc tatttagacg atatttgtgt gttctcgaaa aaccggacag 2280 agcacttgca gcatttgcga cgagtacttg aaattctgcg cagcgagcaa ctctatgcga 2340 aacccagtaa gtgtcatttt gctcaggacg agatccgttt cctggggcac atcgtaagtg 2400 gtacgggtgt gcgagttgat ccggacaaaa ctgcagcgat agcaaattgg gcacggccgc 2460 agaatgtgaa ggacttgcag cgattcttgg ggctctctgg gtattacaga cgatttgtgc 2520 ggagttatgc tgatctcgtt ttacctctct ccaatctctt gaagagcacg actgagtgga 2580 agtggggccc cgatcaagaa ttcgcattca ataccatcaa aaagactctc atttcggcac 2640 ctattttgcg cttaccagac atgaacttgc ctttttaagt tactgcggat gcttcaaagt 2700 cgtgtgtcgg gggtgttctc agtcagcaag ttaatgggtt cgatcatcct gttagcttct 2760 acagtcgcaa gcttttggat acagagacca agtgggccgc gcacgagcaa gagctatacg 2820 ccatcaaaca ttgtctcgga cgctggagat gctatttgct tggaaaccat ttcgtggtcc 2880 acactgacaa ctcagcgtgc cgctggttct tgcaacaccc aaacttatct ccgaagatgg 2940 ctcgttggct cgaatttttc ggtcagtttg attttgagct cgtgcacaag aagggtagct 3000 ccaatgttgt ggcagatgcg ctttctcgtc ctccggtttg cgtcacattg gtcggttcgt 3060 tcgtcttcaa aacgcgtttt cttacccggg ctgccaagct tcttattgag ggagcagaag 3120 cttttgtacc aacatttcct gcacaaccag tgggtgtgcc atctttcggg cacgctctct 3180 tttgatggtg ggggaggatg atcaatttgt acgagacatc aaagcagcat acgcacacga 3240 taaggactgt gttacgattc tgcaaagctt acaacgccag gaggagcgga catctgcaaa 3300 gtacgaagtt ctcgatgggg ttttagtggt gaaaagcaca aatgcagtcc gagtacttcg 3360 tgttcctcaa gttgattcaa ttttactccg gctaatgcac gattttcacg atgctgcggt 3420 ggtggcacat cctggtgtgg aacgtacgat ggtggcgatg cgccaatatt tctggtggcc 3480 aggaatgcgg gagcacattg cgcagtacat ctcaacttgt gaagcttgtg tgcggcacaa 3540 gtctggatct cggcgacgca aaggattact tcagtcgctc cctgttccac attaccgttg 3600 gcagcatgtg actatggact ttgctacagc gctaccaccg agtcaaggtt ttgatgcaat 3660 ttatgtggtt gtatgtcgac tttcaacaga ccatgttata ttcccactac caaggacgtc 3720 gacgccaaga caacagcgag gttgtttttt gatcatgtcg tccgatacta ctctctgcct 3780 gagtcaactg tgtcggaccg agatccaagg ttcacgagtg aattttggtg cgagctgatg 3840 acgatcatgc aagtgaagca acgaatgacg gtgtctagaa gggcccaggc cgatggacga 3900 agtgaacggc aaattagaac tctggaggac agtctacgag gtgttgtttc tcattatgga 3960 gacaattggg tgaagatgtt accgacggtg gaatatgccc atgctacgtt agtgtcaact 4020 tcgactcgca tctccctgtt cgaggtagat tgtggacgaa agcctcgccg tccgatagtt 4080 gtggcaacgt cgggaaattt ggcacaaaac atgactcgat cgcgtaaaga aacaattcag 4140 ttggcacagc gtcacttacg actagctcag gaacgccagg ccctctacta caacagagga 4200 cgacaacaag tgcagttgaa agaaggtgac ttggtgtacg tggactctcg ggtcatgagc 4260 agtgagcttg gtcagccgga ctacgaccca gggcgcgacc caaatcgtaa caagctattg 4320 cccaagtggt acggcccatt tccagttgag aagcggattg gagaaaatgc atatcgtgtt 4380 gcactaccgc atcgctattt ggcccgtgga cgacatgcaa cattcaatgt ggaccagctc 4440 aagctttcgc ttgacgtccc agagattttc cgtggtcggg agatcgctaa gagcgcacct 4500 cggctgtatg atgaagatgg cgagcgtgtg tacgtgatcc gagcattact tgcccagcgt 4560 cgccgtggtg gacgaaaaca gtacttttgc tcatgggtgg acttgcccga gagcgagaac 4620 tcttgggagt tcgagaatga catcagtcat gtcagtcact ggaataaact actggaggcc 4680 ttcaagccaa agcgacgccg tgcttcatcg gcccgcagac gcaggtaagg cgggggagga 4740 // ID Copia-1_AAn-I repbase; DNA; PLN; 9181 BP. XX AC ACJI01002245; XX DT 25-FEB-2011 (Rel. 16.02, Created) DT 25-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Aureococcus anophagefferens genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_AAn_; KW Copia-1_AAn-LTR; Copia-1_AAn-I. XX OS Aureococcus anophagefferens OC Eukaryota; stramenopiles; Pelagophyceae; Aureococcus. XX RN [1] RP 1-9181 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Aureococcus anophagefferens RT genome."; RL Direct Submission to RU (25-FEB-2011). XX DR Genome; ACJI01002245; Positions 531 9711. XX CC Positions [5410-6003] - Integrase core CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS 148..2526 FT /product="Copia-1_AAn-I_1p" FT /translation="MADAEEQLDNIYETLKDDKTRTKSFVDSQLNTFLDGH FT RFQVNHTAEHNLGVFNKNVSNPMFANFSQYATYEDLVRSPATDPNLYARLR FT CHLASQLEDAFDDLIKECHRQGRNDSAYEPAPTPLPDGYEPVSRPTWTREF FT ASAALRQWRYMPNRVKSGGGGQLLKVVNADNRCIREDGSFINPNDEAQRLL FT FARAMAVWINATPSDRGAAQEKIDDNRSRSVWFLTTETNNLVLNETKDGGV FT RPYGVVVKRGKFWSLLMNRAVTNHRLTTRNPVDDPKCSEFAAMYCSIPEGF FT VRKDKKLELLHGGNRLPKPVDFEWGCQGLAGLLQRFCDIDGSNQTAAKDLP FT CWTEIKSLVTNYGIPNPFWAISTLVKTTMDVVPSSNNEEHINTFNNTQYDS FT KYWADHFITYLRGYQTFMEKNGVTVSDDSLLTKFQDGFLPQHKDQGKDGYD FT AQLYLLADARRCRRDGLPTPHIAPAVANAWNTFSDLQLYLTTLGNTFRRGG FT GNTACYRSPIPMKYSVHSLNDSSSMQFGRKPGRALMAGAFSSEWVDGIKVT FT GQALVNLQQQRTQLIQDDQTDYGALSDILDALGDYGDFESKEDLLADYSAH FT ALHQRQRGGGRPPGRERGYFNNYDDRIQEIRKRVNKFSRAKDNPDDARRSP FT GNARVVPYYNKNSSRTPDLSPGKRAMYKPWQEGNRLHQKLQDAKARQDWNA FT VAEVDKELAQALAVFQETPEVAREDPDKPTYQDKQDKVICTILDVMDVAKH FT AGMSDEAVAAALAIMNDRFYNTPAGEDEEAEQDGRRLSCQFC" FT CDS 3295..9180 FT /product="Copia-1_AAn-I_2p" FT /translation="MYGIHTETYIAKGSGSFKSKKLPIEIICGCESNDSLR FT RQFDKDNPSVKANGLSFSCLRTMLNTLIKKPSLVNKLKNADIMSVTAPCQG FT RSVLRDENKTPIDQPFKDNDLFFLQVLIAQLLLPKRIISEMTPPNKNYNKD FT HLGVMRMLQELNYEVTVTDRFSSDLCGDIQHRDRWILVGRLKAKGSVLRPF FT SLQCYYKTRSRPLKVLLDPPEDVPHQHWLRGKNMNQIYNDPVPYPEDPTEP FT NDYTFSGGTKITTWENAELMMLLERIKSNFDCEFSQFHHFRRSFQLGGTKD FT TKRLLCNPMIAKVWTILNNIKRRTTNSRDHDSFIITLDGSGLGLVTAAVYH FT DRADVSLTQATCTYNVGCYTGGELKLPSFDESPSQSELQNICQQTFSLHSK FT AVARLEDFEGVLFNISSLCSNNELSNTRTLVNHLNSVQPGCIELDDYGLMT FT YKDVNFELESCYLSRSSYLGYINGENVKGNKVYSIQRASPTFTSWANILIL FT DDRHKNRMFKGIRGLTFNEILRINHLAEEQDDFLRSIPEDQAYTYIANAVP FT SGMLHTVYKAVIDDLNGELDSGGVYFTLSNLVAFETPKKNTATHLIGKVMN FT LMFEPSEDTGHVLDNSYPEFPKVDTDVSKKRHVRTAKHDTTTRDTTEAASK FT KRMRDFHRIYHCNNDVAAKTMQCTTNHRLLPGDIKHKQNCMECSICKNDKN FT PRSHFNKNIPTKEVKLSVGEGYSFDGADLTHISHQGFRYVLNFIDVVSKTR FT VAYYVRSNATHEFREALEYVKTYSKQFTGNELKFLYSDMFSTYMEFRSDNG FT IAAFRDETGITLEVCPPYMHWKNGEVESSIHECKKGTRVRLRNFAQQLARL FT ENNRYIRETNDYWPWAWEHTCQSFNSLASVALEKRYGVTVTPWQYFTNDTS FT HHKLALQPFGEFCYSLVQKENRDGSLGEVRQPAYFLINGRMNSLKNKFADM FT PRAQICLFNDGKVRTTGSAIFPYEISDELHDGTRRIILNPALPQPPEKEAA FT AISDGHGWTQRTIHRTSDDFQRTLSDIDMDLNKDPDPVQIDRQRSNVAKAH FT DVPRKSYVPDPSDYPDTEDNPDKPVFSPEEENSGGGADMEHGQQEEKLEAH FT PPVPEEPMRYGADGQYDHDDSDVHKGIPLECRPLPWHLRKRRRSPVQRFSF FT GTDIRRADSRWDDSLLVIPSIGELLEANAEVYVMPGASRRVRAHTRYKHYR FT RARTLPEYFAYGGTHEDYRNDVWYGILRFLDPELYALQYSRGANWSKLSSG FT GEENMPKMAGEAYACYYQSDSAAPPIVPDKSSLCDEKLLREARIQRNLVED FT FQRANMLGMTHDQYHTVKYDSYSLVKNPEAHYATNYDVHDRLVDYLTLMTN FT QVIENTDPDAAADLLPQATEIFLALYTVTKEDIRIDTSKLADLAKTPIEQR FT PKMIEAIAKEIHDLCSIGAFELVPMPDRARPIDSRIVLKVKYRADGAYDKH FT KARLVARGFLARLGVDFFSTFSPMASLTAVRMMFSLAVNQGFDVWHCDIPQ FT AFIQSQIDGDSYLKFPRGVTVERNGKSGDVVKLRKALYGLKQSPQLWNKAL FT TSFFEKLGFTRATSETSLYHKTKVQSDGLRENLFVLCEVDDLVITGSPRMV FT VELRDQLKAEFNISQFEPMSSFLGINIKYDKHLGRLAMDVEEKLNALFKER FT PILNGIGTKSVPMRSDAKPLVKDNRELTAYLHDTKNYASIVGSLIYISITC FT RPDITQAVSRVSRGMHGPTEQHVVLLRELLQYLNGTKGLKLVYYRDKHPIF FT EHLKASAHEDKTLLDLVPKDSYKWDSLGIIKPSHDLPESDAPRAFDPVCSK FT DLWGASDADHLPKMEESKKSTTGYTFFFMGNLISWKSKLQPILATSTHESE FT LIALNIAAQEAIWIRNLIQELNCAISGKDEPLKATSILCDNLGTVHTSSNP FT VSSGRSKHIDMRYLKIREYQSSSQLEVRHIEGTNNVAD" XX SQ Sequence 9181 BP; 2584 A; 2218 C; 2085 G; 2294 T; 0 other; ggttatggcg cgggtgcgtc gttagacgta cccttcccac ttgtgcgaga gactgctctt 60 gtttgtgtgt gtgccaagag gtgcttgtca cacctgtcct taattgtgag cctggtgcac 120 attcacacat aaaaattacc gtcagctatg gctgacgctg aagaacaact cgataacata 180 tacgagacgc taaaggacga taagactcga acgaagtcgt ttgtcgactc acagctcaac 240 actttccttg atggacacag gtttcaggtt aatcatacgg cagagcacaa cttgggggtc 300 ttcaacaaga acgttagtaa ccccatgttt gccaacttca gtcagtatgc cacatatgag 360 gatctggtcc gatcacctgc tacagatccg aatctgtacg cgcgtttgcg ttgtcacctc 420 gcgtcacagc ttgaggatgc ctttgatgac ctcatcaagg agtgtcaccg gcaagggcgc 480 aacgactcgg cttacgagcc tgctccaact cctcttcctg acggttatga gccggtatct 540 cggcctacct ggaccaggga atttgcgtct gcagctttac gtcagtggcg ttacatgcct 600 aacagagtta aatctggtgg tgggggccag cttcttaagg tggtcaacgc tgacaacagg 660 tgtatcagag aggatggctc attcattaat ccaaatgacg aggcacagcg tttgctgttt 720 gcccgtgcca tggctgtatg gatcaatgct actccctcag atagaggcgc tgctcaggag 780 aaaattgacg acaatcgatc gaggagtgtg tggtttctca ctaccgagac caacaacctt 840 gttttgaatg agacaaagga cggcggcgtc cgtccatacg gcgtagttgt caaacgtggt 900 aagttctggt ctctgttgat gaaccgcgct gttacgaatc atcgattaac gactagaaat 960 cctgtcgacg atcctaagtg cagcgagttt gctgctatgt attgctccat tcctgaaggc 1020 tttgtcagga aagacaaaaa gttggaactc cttcatgggg gtaatcggtt gcctaaacca 1080 gtcgatttcg aatgggggtg tcagggccta gcaggtttgc tacagaggtt ttgtgacatc 1140 gatggctcaa accagacagc ggcaaaggat ttgccctgct ggactgagat taagtctctg 1200 gtcacaaact atggcatacc aaatcccttc tgggccatta gcaccctagt gaaaacgacg 1260 atggatgtgg taccttcctc caataatgag gagcacataa ataccttcaa caacacccag 1320 tacgattcta agtactgggc agaccatttc attacgtacc ttaggggcta tcagacgttc 1380 atggagaaga atggtgtcac tgtgtccgat gatagtttgc tcactaagtt tcaggatggc 1440 ttcttgccac agcataagga tcaaggtaag gatgggtatg atgcacagct ctacttgctt 1500 gcagacgcgc ggcgttgtcg ccgtgacggt ctccccacgc cccacattgc tcctgctgta 1560 gctaacgcat ggaatacttt ctccgatctt cagctttatc taactacatt aggtaacaca 1620 tttcggagag ggggaggaaa taccgcatgc tacagaagcc ccattcccat gaaatatagt 1680 gttcacagtc ttaatgactc atcatcgatg caatttggaa gaaaacctgg cagagcgctt 1740 atggctggtg cattcagttc agaatgggtt gacggaatca aggtaaccgg tcaggctctt 1800 gtgaatctcc aacaacagcg tacacagctt attcaagatg atcagactga ctacggtgca 1860 ctgtccgata ttctcgatgc tctaggcgat tatggtgatt tcgaatccaa ggaagatctc 1920 ctggctgatt actctgccca cgctctacat cagcgtcagc gtggtggagg tagacctcct 1980 ggtagagaga gaggttactt caacaattat gatgatcgta ttcaagagat cagaaagcga 2040 gtgaacaaat tctcgagagc caaggataat cccgatgatg ctcgtagatc accaggcaat 2100 gctcgcgttg tcccatacta caacaagaac tcaagtagaa ctcctgatct cagccctgga 2160 aaaagagcca tgtacaaacc ctggcaagaa ggcaatagac tacaccagaa gctccaagac 2220 gcaaaggctc gtcaagactg gaatgctgtt gcggaagttg acaaagaact tgctcaagct 2280 ttggctgttt tccaggaaac acctgaagta gccagagaag atccagacaa acctacttac 2340 caagacaagc aagataaagt catctgtacg attttagacg ttatggatgt tgccaaacac 2400 gccggcatga gtgatgaagc cgttgcagca gcactggcta ttatgaatga cagattctac 2460 aacacacctg ctggcgaaga cgaagaagca gaacaagatg gaaggcgact ctcatgtcaa 2520 ttttgttgac tcatcaactg cccagtgcta cctaacgcag ggactcaaaa ctgacattct 2580 gagaccgtgc tattgtagag aggttaaaat tgacactggc tcaacattcg atctaggttc 2640 ctgtcatcag tggcagtaca ttgtcgatct caagtctccg atcagaatca acatggctaa 2700 agaccatatg ttgataaata aggttggtct ggcactcaga tatattaatg atcctactga 2760 tgcacggact ctcgtgtgct atgggctagg aatggttcaa aagctacacg attctactct 2820 tgagatttgc agtatgcgca cggtcaagaa ccttggctta ggatttcaaa tgcccccggg 2880 tgcctcttca gtagacaccc tttacaatga tcatgttaag ttaccagttg actgtagtga 2940 aaatggcatt ccgcgattct tcgacatagg acctcctgct aatggccaag cctacaacct 3000 cattgacatt tttacaaatg aaccgttcga tgcccggaaa gcattcaagc ggcttcagaa 3060 agtattccct caaatcttga aggacaatga ggccaacgct ggcaaggatt tctacatcga 3120 gcccgataaa ctcaagggtg ctgtgcatca acttgaggaa tcagtaatgt ccaccgcgtt 3180 tccaaagaaa caaaagcgcg ttacaattgt tagtcccaaa actgacaaac caccttttct 3240 gaagggcctg gacaatcgtc cagtaagtcc aaaccgaaga aggtaatagc tttgatgtat 3300 ggcattcaca cagaaactta tatcgcaaag ggatctggaa gttttaagtc taagaagctt 3360 cccattgaaa tcatctgcgg atgtgagtca aacgactcac ttcgtcgaca attcgataaa 3420 gataacccct ctgttaaggc aaatggatta agtttctcat gcctacgcac tatgctcaat 3480 accctaatca agaaacccag cttagttaac aagctaaaga atgctgacat catgtcagtt 3540 acagcgccct gtcaaggacg cagtgtactc cgagacgaga ataaaactcc tatcgatcaa 3600 ccttttaagg acaacgatct gttctttctt caagtgttga ttgcacaact tttactaccc 3660 aagcgtatca tctctgagat gactcctcct aataaaaact acaacaaaga tcatctagga 3720 gtgatgcgca tgcttcaaga actcaactac gaagtcactg ttacagatcg attctcttct 3780 gacctttgtg gcgacattca acaccgcgat aggtggatcc ttgttggaag gcttaaggca 3840 aagggaagcg ttctacgccc cttttctcta caatgctact acaagactag aagtcggcct 3900 ctcaaggttc ttctagatcc acccgaagat gttccacatc aacattggct gagaggaaag 3960 aatatgaacc agatctacaa tgatccagtg ccgtacccag aagatccaac tgaacccaat 4020 gattatacct ttagtggagg caccaaaatc actacttggg agaacgctga actaatgatg 4080 ttgctcgaaa ggataaagag caattttgac tgcgagttct ctcaatttca tcactttcgt 4140 agatcgtttc aacttggcgg cacaaaagac acaaaaaggc tcctgtgtaa tcccatgatt 4200 gctaaggttt ggactatcct aaacaacatc aagcgacgaa ccacaaacag tcgagatcac 4260 gattctttca tcatcaccct cgatggttct gggcttggtc tggtcactgc ggcagtctat 4320 catgaccgcg cggatgtttc ccttactcaa gcaacgtgca cctacaacgt gggttgttac 4380 actggaggag aacttaaact ccccagtttc gatgagagcc cctctcaatc tgagcttcag 4440 aacatttgtc aacagacctt tagtcttcac tctaaggcag tagcgcggct agaagatttt 4500 gaaggagtac tctttaacat ctccagcctt tgttcaaaca atgaactctc aaacacccga 4560 actcttgtca atcaccttaa ctctgtgcaa ccaggttgca tcgaacttga tgattacggt 4620 cttatgactt ataaggatgt caactttgag ttggagtctt gttatctctc ccggtcatcc 4680 tacttgggat atataaacgg cgagaatgtg aaaggtaaca aggtatactc catacaacga 4740 gcatctccca ctttcactag ttgggcgaac atccttatcc tagatgacag acacaagaac 4800 aggatgttta aggggatacg gggcttgacc ttcaatgaaa ttcttcggat aaatcacctc 4860 gctgaagagc aggacgactt cctaaggtct attcctgaag atcaagccta cacctacata 4920 gctaatgcag tgccctctgg aatgcttcat accgtctata aagcggtcat tgatgatttg 4980 aatggggaat tagatagcgg gggagtatac tttaccctct ccaatctagt cgcattcgag 5040 acaccaaaga agaacacagc aacgcacttg attggcaaag ttatgaacct catgtttgag 5100 ccaagtgagg atactgggca tgttctggac aattcctatc ctgaatttcc aaaggttgat 5160 actgacgtgt ctaagaaacg acatgtccgc actgcgaaac acgatactac tacccgcgat 5220 actactgagg ctgctagtaa aaagcgcatg cgtgactttc accgcatcta tcactgcaac 5280 aatgacgtcg cggctaagac aatgcaatgt actaccaacc atcgtcttct tcctggtgac 5340 attaagcaca agcagaactg catggagtgt tccatctgca agaacgataa gaacccccgc 5400 agtcacttca acaaaaacat acctacgaaa gaagttaaac tttcagttgg tgaaggctac 5460 tcttttgatg gggcagattt aactcatatc tcccatcaag gctttcgtta tgtgcttaat 5520 ttcatcgacg ttgttagcaa gacaagggtc gcttactatg tgaggtctaa tgccacacat 5580 gaattccgtg aagcacttga gtatgtgaag acgtattcta agcaattcac tgggaatgag 5640 ctgaaattcc tatactcaga catgttttcg acttacatgg agtttcgaag tgacaatggc 5700 attgctgcat ttcgagatga gactgggatc accctagagg tgtgccctcc ttacatgcac 5760 tggaagaatg gtgaagttga atcttccatc catgaatgta agaaagggac tagagtccgt 5820 ctccgtaatt tcgctcagca gctagctcgc ttggaaaaca atcgatacat cagagagacg 5880 aatgactatt ggccgtgggc ttgggagcac acgtgtcaaa gttttaactc actcgcgtct 5940 gtggcactag aaaagcgtta tggtgtaact gtaacaccct ggcaatactt tactaatgac 6000 actagccatc acaagttggc actccagcct tttggtgaat tctgctacag tcttgtacag 6060 aaagagaacc gcgatgggtc acttggtgaa gtcagacagc cagcgtactt cctcataaat 6120 ggacgtatga actcgttgaa aaacaagttc gcagacatgc cccgagcaca gatatgtctg 6180 ttcaacgatg gcaaagtaag aactacaggc tctgcgatct tcccatacga gatatccgat 6240 gaacttcatg atggaaccag gaggataatt ctaaatcctg ctttaccaca gccacctgag 6300 aaggaagcgg cggctatctc tgatgggcat ggttggactc agagaacgat tcatcgcacc 6360 tcagacgatt tccagcgaac cctgtccgat atcgacatgg acctaaacaa ggacccggat 6420 cccgtgcaga tagatcggca gaggagcaac gtagctaaag cacatgacgt gcctaggaaa 6480 tcatatgttc cagacccgag tgactatccg gacacggaag acaacccaga caaaccggtt 6540 ttctctccag aagaggaaaa ctccggggga ggggctgaca tggaacatgg tcagcaagag 6600 gaaaagttag aagcccaccc tcccgtccct gaagaaccca tgcgatatgg ggccgatggc 6660 caatacgatc atgatgacag cgatgtgcac aaggggatac cgcttgaatg tcggccactc 6720 ccatggcatc tgcgtaagcg ccggcgttcg ccggttcaac gtttcagttt cggaactgac 6780 atccgcagag cagactctcg ttgggacgac tctctgcttg tgattccatc tataggcgag 6840 ttgcttgagg cgaacgctga ggtttacgtc atgcctggcg cctctcgtcg cgtccgtgct 6900 cacactcgct acaagcatta tcggcgtgct cgtaccctgc cggagtattt cgcttacggc 6960 ggtactcacg aggactaccg aaacgatgtc tggtatggca ttctgcgctt cttggaccct 7020 gagctttatg ctctgcagta ctctcgcgga gctaactgga gcaagcttag ctccggggga 7080 gaagaaaata tgcccaagat ggcaggtgaa gcttacgctt gctactatca gtcagactca 7140 gcagcacctc cgatagtgcc agataagtcc tctctttgcg acgagaaact tttacgcgag 7200 gcaagaatac agcggaatct cgtagaggac ttccagcgtg ccaatatgct aggcatgaca 7260 catgatcagt accatacggt caagtacgac tcttatagtc tagtgaagaa tccagaggct 7320 cattatgcga ctaactacga tgttcacgat cgactcgtgg attaccttac tcttatgacc 7380 aatcaagtca ttgagaacac tgatcctgat gcagctgcgg atttacttcc acaagctaca 7440 gagatcttct tagcgctata tactgtcact aaggaagaca ttcgaatcga tacgagcaaa 7500 ctagcagact tagccaagac accaattgag caaagaccca aaatgataga ggctatagca 7560 aaggaaatac atgacctctg ttctattggt gcttttgaac tagttcctat gcctgatcgc 7620 gctagaccca ttgactcaag aattgtcctc aaggtcaaat atagagctga tggggcttat 7680 gacaagcaca aagctcgcct tgttgcgcgc ggcttcctgg cacgccttgg cgtagacttc 7740 ttcagtactt tcagtcctat ggcctccctt actgctgtgc gaatgatgtt ctccctagct 7800 gtcaatcaag gcttcgatgt ttggcactgc gatattccac aagcttttat acaaagtcag 7860 attgatggtg attcctatct gaagtttcca agaggcgtca ctgttgaacg taatggtaaa 7920 tcaggtgacg tcgttaagtt gcgcaaagca ctctatggac tcaaacaatc tccacagctc 7980 tggaacaagg ctttgacatc cttctttgaa aagttgggat tcacgcgtgc cacgtctgaa 8040 acctctttgt atcataagac caaagtacaa tcagacggcc tgcgggaaaa tctctttgtc 8100 ctttgcgaag tggacgatct tgtcatcact ggctcaccga gaatggtagt cgaactcaga 8160 gaccaactta aggctgagtt caacatctca cagtttgagc ctatgtctag cttcctcggt 8220 atcaacatca aatatgataa gcaccttggg cgccttgcta tggacgttga ggagaagctt 8280 aacgcactct tcaaagaacg accaattcta aatggcatag ggacaaaatc tgtcccaatg 8340 agatcagatg ctaaacccct tgtaaaggat aacagggagt taacggcgta cctccatgac 8400 actaagaact atgcatctat tgttggctct cttatttata tcagcatcac ttgcaggccc 8460 gatattactc aggctgtaag tcgagtctcc agaggcatgc atggccctac tgagcaacat 8520 gtggtcctcc ttagggaact ccttcagtat ctaaatggca caaagggact gaagctagtt 8580 tactaccgtg acaagcatcc catctttgag catttgaaag caagcgcaca cgaagacaag 8640 actcttcttg atcttgtacc gaaagactcc tacaaatggg actccctagg catcatcaag 8700 cccagtcatg acttacctga atctgatgca cccagagctt ttgatcctgt gtgcagtaag 8760 gatctttggg gcgccagtga tgctgatcac ctaccaaaga tggaagagtc taagaagtca 8820 acgacaggct acactttctt cttcatgggc aacttgatct catggaaatc taagcttcag 8880 cctatactag ctacttccac tcatgaatct gaactgattg ctctaaacat tgcagcccag 8940 gaggctatct ggatacggaa cctcatacag gaactgaact gtgccatctc aggtaaagac 9000 gaacccctga aggcaacgag cattttgtgc gacaaccttg gaacagttca cacctcttcc 9060 aaccctgttt cttcaggcag gtcaaaacac attgatatgc ggtacttaaa gataagagag 9120 taccagtctt cctctcaact cgaggtaaga cacatcgagg gcaccaacaa tgtagccgac 9180 a 9181 // ID Gypsy-20_PR-I repbase; DNA; PLN; 5128 BP. XX AC AAQX01002724; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PR_; KW Gypsy-20_PR-LTR; Gypsy-20_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5128 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002724; Positions 6027 900. XX CC Positions [3882-4367] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 69..5099 FT /product="Gypsy-20_PR-I_1p" FT /translation="MGDKDDVNVDELTARAAELQLESAASRSPRSPGLRLQ FT IPNPFEREDEVMETASQASPMGHAGTSRVAAAPTLPQPPRFEGRSMQDRRD FT FMHKYETYLGAINALQTQWSGAFAMPVGACIESKTKRMIARYEFNQLPGAI FT TEEQWVAYFLQAKTPSPVDYTSVDEAMKALRMQTRWPEPESRMMNLQSDME FT AILDRFNLTDLAFQHEQRRLVKYLAAALAPPGFKAVINTKLTLQENRTYKH FT EVVPFCSWVTQLMKEFMTWEHAAQVSGGQPGPSAQNQPRSGSGGRGGNGGR FT GANTGRGAGGGDNTPTRGAQGSPSIRGGRGDQHGRGGRGYGSTRPQESTRP FT QESPSRGPTPETRSGRGACLKCGSSEHQVRQCPLCSSEEAVELLRGRREQH FT AGTRGVSMNKFDVVTASDSVLTAGEDRGTVEAAVEGVPVKALLLDSGADTS FT LVARGVLDSIGQAGKPVAVRTIHPVRLSPVGGREVVVQRMATFSEIVLTTS FT AGPLLLRNLACFVEEDNSRMELTVGRPIMKILGYSTDKLLVEARDAQAEWE FT LGGDTSPKVDKDQSSPTSLQRICRLAVAVAAQDPGPDAEEEDIYRHETRTA FT LPCMQPTNLAEVTHYLESKVEIATRMGLTLDGSAKLRGILQMRADSFRLEF FT GHDPPVRVAPMQVRLKPGATPIRAQPRRYSPNDRAFLDRHTTTLMKHGLIF FT KNHRSRWASAPRIVKKKEQADDPLADPRMTIDTRSVNERTEPMPWPMPVLE FT VVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMG FT ATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLER FT CEKFGLKLHAKKCQFFATEVKWCGRMISAQGVRHCPERIQGLVEMQAPQTA FT GDLQQFLCAVNWMRQSIPEFTRITAVLYDALDRAAQIAGSRKKVKLARVRL FT EDVSWGADEMAGVEAVRDALLNMVPLAHPSPTADLCLYSDASNDYWGAVVT FT MLDPEELKLPRAEQHHRPLAFLSGRFVGAAQRWPTIEKEAFAIVEAVRRLE FT YLLLRPRGFHLFTDHRNLVYIFNPYATDGMMARYQADKLQRWALALMSFRY FT VIEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADF FT VWPSEQEIRAVQQAAGAAAHPGVQWNEERQLQMTSTGQVWIPPDSGELQQR FT LCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVAAGG FT RIPRPFGETLRATRPNEVLHFDFLTMIESTSGVKYVLVLKDGMSGFVELLA FT CTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVVERLQRALGAHHH FT FTTAYTPWANGTVEVVNREVLKSVKALLSERRMHVQDWPAVLPVVQAALNA FT MPADRLDGRSPLTAFTALPADSQLRSILHPRSPTQATLEWVDSEVRSHLTA FT VREALDNMHAEMVSASEKRRRAARERHARRQGVRLHKFSEGDFVLAATATG FT RSGHKLALVWRGPKRILKALNDYTFEVQDIIEPFAVTIRHASRLQLYRDAA FT RGRVEELQEQAIYGEGGHLVEALLDCRLSPDSHRWEVFVKWFGLDDIEASW FT EPADIIKQDVPGLFQVFVDDQPEARSRRDMAAALAGPDRDDERPAQRAPRR FT RQPRQPRT" XX SQ Sequence 5128 BP; 1074 A; 1457 C; 1633 G; 964 T; 0 other; aagttaactt tagtttctca gttctacacg gttcaagctc cgcgtgaacg acttcgcgcg 60 tgaccaagat gggagacaag gatgacgtca acgtggacga gctgacagct cgagccgcgg 120 aattgcagct ggagagcgcg gcatcgaggt caccgcgctc cccgggtctg cggttgcaga 180 tcccgaaccc cttcgagagg gaagacgaag tcatggagac ggcaagtcaa gcatcaccta 240 tgggacacgc gggtacgtcg cgcgtagcgg cggcaccaac gttgccgcag ccaccccggt 300 tcgagggacg ctcaatgcaa gatcgccgtg atttcatgca caagtacgag acgtatttgg 360 gtgcaatcaa tgcgcttcag acgcaatgga gcggcgcttt tgccatgcca gtgggcgcct 420 gcatcgagtc caagacgaag cgtatgattg cgcgctacga gttcaaccag ctgccgggcg 480 caatcacgga agagcaatgg gtggcctatt tcctgcaagc gaagacgccc tcacccgtgg 540 actatacctc ggtcgacgag gctatgaagg cgcttcggat gcagacgcgt tggcccgagc 600 ccgagagccg catgatgaac ctgcaatcgg atatggaggc tatactggac cggttcaacc 660 tcacggacct cgcgttccag cacgaacagc gccgcttagt gaagtacctt gctgcggcgc 720 ttgcaccccc cgggttcaag gctgttatca acacgaagct gacgttgcag gagaacagga 780 cgtacaagca tgaggtggtg ccgttttgct cctgggtgac tcagttaatg aaggaattta 840 tgacgtggga gcatgcagcg caagtgtccg gtggacagcc ggggccgtca gcgcaaaacc 900 agcctcgctc aggtagcggt ggccgtggtg ggaatggtgg ccgaggtgct aataccggca 960 gaggagctgg tggtggtgac aacacgccaa ctcgcggggc tcaaggtagt ccgagtattc 1020 gtggcgggcg cggcgatcag catggacgcg gtggccgtgg gtacgggtcc acgcggccgc 1080 aagaatccac gcggccgcag gaatcaccta gtcggggccc gacgccagag acacggtctg 1140 ggcgcggggc atgcctaaaa tgcggctctt cagagcatca agtacggcag tgccccctct 1200 gctcgtcgga agaggcggtg gaattgctac gagggaggcg cgagcaacat gccggaacac 1260 gaggcgtcag catgaataag ttcgacgtgg tgacagcgag cgactcggta cttaccgcag 1320 gcgaggaccg cggcactgtt gaggcagccg tagaaggtgt ccccgtcaag gcacttctcc 1380 tcgactctgg cgccgacacg tcgctagttg cgcgcggcgt cctcgactcg attggccagg 1440 ctggaaaacc agttgcggtg cgaactattc atcctgtgcg gctgagtcca gtggggggac 1500 gcgaggtggt ggtgcaacgc atggcgacgt ttagcgagat cgtcctcacc acgtcggccg 1560 gtcctctact gttgcgaaat ttggcctgct tcgtcgaaga agataactcg agaatggagc 1620 tgacggtggg tcgcccaatc atgaagattc taggttattc cacggacaag ctactggtgg 1680 aagcccggga tgcgcaggcc gaatgggagc tcgggggaga cacttcgccg aaggtggaca 1740 aagaccagtc ctcacccacc tcgctccagc gcatttgccg attggcggtg gcggtggcgg 1800 cgcaagaccc aggaccagac gcagaggaag aggatattta ccgacatgag acacgtacag 1860 cgctaccgtg tatgcagccg acgaatcttg cagaagtaac ccactacctg gagtccaagg 1920 tggagatagc aacgaggatg ggactgaccc tcgacggcag cgccaagctt cggggcatcc 1980 tgcagatgcg agcggattca tttcggctcg agttcggcca tgacccacct gtccgcgtag 2040 cgccaatgca agtcaggctg aagcccggag cgacgccgat cagggcgcag ccccgccgct 2100 attcacccaa tgatcgcgcc tttctggaca gacacacgac cacattgatg aagcacggac 2160 tcatcttcaa gaaccatagg agtcgctggg cctccgcacc tcggattgtc aagaagaagg 2220 aacaggctga tgacccgctg gcggatccac gcatgacaat cgacacgcgc agtgtcaacg 2280 agcgcacaga gcccatgcca tggcctatgc cagtgctgga ggtcgtgatc ggtgagctgg 2340 agggcgccaa ggtgttcttt gtcctcgact ggtttcgtgg gtactggcaa ctaccgctac 2400 accctgattc ccaggagatc tactcgttcg taactcaccg gggcatctac acgccgacgc 2460 gggtgcccat gggcgccacg gatgcggtag cctactgcca aggcgtagta gaagagatct 2520 tcggagatct gctcgggacg tgcattttgg cctggctgga tgatatacta ggctatgctg 2580 aagatgaagc ttcgctcctc gaagtgctgg acaaggtgct agagcgctgc gaaaagtttg 2640 gcctcaaact ccacgcgaag aagtgtcagt tcttcgcgac ggaagtgaag tggtgtgggc 2700 gaatgatatc agctcaaggt gtgcgacact gtccagagcg aatccaggga ttggtcgaga 2760 tgcaggcgcc gcagacagcc ggagacctcc agcagttttt gtgcgccgtg aactggatgc 2820 ggcagagcat tccagaattc acgcgcatca cggcagtcct gtacgacgca ctagaccggg 2880 cggcgcagat cgcgggctcg aggaagaagg tcaagttagc ccgagtcaga ttggaagatg 2940 tcagctgggg cgcagacgaa atggccggag tggaagctgt ccgggacgcg ctcctcaata 3000 tggtgccact tgctcacccg agtcctacgg ccgacctgtg cctatactcc gacgccagca 3060 acgactactg gggcgccgtc gtcacgatgc ttgacccgga ggagctcaag ctgccgcggg 3120 cggagcaaca tcaccgccca cttgcgttcc tcagtggccg ttttgtcggt gccgcgcagc 3180 gatggcccac catcgaaaaa gaggcattcg caattgtcga ggctgtgcgt cgactggagt 3240 acctcttatt gcgccctcgt ggatttcatc tctttacgga tcaccgtaac ttggtctata 3300 tctttaaccc ctatgcgacc gatgggatga tggcgcgcta ccaagctgac aagctacaac 3360 gttgggcgct cgcgctcatg tctttccgct acgtaatcga acacgtgcca ggcgaggaaa 3420 atgcgtgggg cgacctgctg agccgctggg gcgcggggcc tccactagaa gcaacgcgaa 3480 cggccatccg agcggctcgc ctcgcagtcg tcgaacgcgt gtccccgcta gaagaagcag 3540 atttcgtgtg gccgtccgag caggagatcc gagccgtgca gcaagctgcc ggagcggcgg 3600 cgcaccccgg tgtacagtgg aacgaggagc ggcaattaca gatgacatcc accgggcaag 3660 tatggattcc gcccgattcg ggtgaattgc aacagcgtct atgcgtggtg gcgcacgcag 3720 gagccagtgg tcatcgcggg gcggccgcga cacttaagtc gctctcgacg tgtttcttct 3780 ggcccacgat gggccccgac gtaaccacgt ttgtcaacga gtgcctacat tgtatggtgg 3840 ccgcaggcgg gcgcattccg cgtccgtttg gcgaaacatt gcgagcgacg cgccccaacg 3900 aggtgttgca cttcgatttc ctgaccatga tcgagagcac gagtggcgtc aagtacgtat 3960 tggtccttaa ggacggaatg agcgggttcg tcgagttgtt ggcatgtacg cacgcgacat 4020 ccgaccacgc gtaccagggt ctcatcgatt ggttcaagcg ttttggcgtt gtgcatcagt 4080 gggtctccga ccagggggcg cattttcgga accaagtggt cgaacgcctg caacgcgccc 4140 tgggtgcgca ccatcatttc accactgcct acacgccgtg ggcgaatggc accgtcgaag 4200 tggtgaaccg agaggttctt aagagcgtga aggctcttct aagtgagcgc aggatgcatg 4260 ttcaagattg gcctgcagta ctaccggtgg tgcaagcggc gcttaacgct atgcccgcgg 4320 acaggctgga tggccgctca cccctgacag cgttcacagc gttaccggct gactcccagc 4380 ttcgcagcat tttgcaccct cgatctccaa cgcaggcaac cctcgagtgg gtcgactcgg 4440 aagttcgcag tcatctcacc gctgttcgcg aggcgttgga taatatgcat gcggaaatgg 4500 tgagtgccag cgagaagcgc cggcgtgcgg cgcgggagcg gcatgcgcgt cgccaaggtg 4560 tgcggcttca caagtttagc gaaggtgatt tcgtcctggc ggcgacagca actgggcgca 4620 gtgggcacaa actggccttg gtgtggcgcg gccctaagcg catcctcaag gcgctgaatg 4680 actacacttt cgaggtccaa gatattatcg agccattcgc tgtcactatc cgccatgcct 4740 cccgacttca gctttatcgc gacgccgccc gtgggcgcgt ggaggagctc caagagcagg 4800 caatctacgg cgagggtgga catctggttg aagcgctgct cgactgtcgg ctgagcccgg 4860 actcgcaccg ttgggaggta ttcgtcaagt ggttcggtct tgacgacatc gaggcgtcat 4920 gggaaccagc cgacatcatc aagcaggatg tgccgggtct ttttcaggtt ttcgtcgacg 4980 accagcctga agctcggtcc cgccgcgaca tggcggccgc gttggcgggt cccgaccgcg 5040 atgacgaacg tccagcccag cgtgcccccc gccgacgcca accgcgccag ccgcgaacct 5100 gattaccgac ttcacgtgga gggggaag 5128 // ID Copia-10_PIT-LTR repbase; DNA; PLN; 232 BP. XX AC AATU01002683; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PIT_; KW Copia-10_PIT-I; Copia-10_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-232 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002683; Positions 205109 205340. XX SQ Sequence 232 BP; 69 A; 60 C; 32 G; 71 T; 0 other; tgtcaatgat gtgtcctaat tggtgacata gcgtacaagt tattgtacag aatgtcttac 60 catacaaaat atgttctgga cccaatcctg cataagtcga tacatcacct tttacaggaa 120 agataaatca atggtgccag gaaactctct gaagacagac tcataaaatt caatcacatc 180 tcttttttct tccttctact caagctcctc caccttcctc gcctcacctt ca 232 // ID CFT1 repbase; DNA; PLN; 7396 BP. XX AC Z11866; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE C.fulvum CfT-1 LTR-retrotransposon encoding homologues to DE Retroviral gag, pol, and env genes. XX KW LTR Retrotransposon; Transposable Element; CFT1; ENV gene; KW gag gene; pol gene; retrotransposon reverse transcriptase. XX OS Passalora fulva OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Dothideomycetes; Dothideomycetidae; Capnodiales; OC Mycosphaerellaceae; mitosporic Mycosphaerellaceae; Passalora. XX RN [1] RP 1-7396 RA McHale T.M., Roberts N.I., Noble M.S., Beaumont C., RA Whitehead P.M., Seth D. and Oliver P.R.; RT "CfT-1, an LTR-retrotransposon in Cladosporium fulvum, a fungal RT pathogen of tomato."; RL Mol. Gen. Genet 233, 337-347 (1992). XX RN [2] RP 1-7396 RA Oliver P.R.; RT "CFT1."; RL Direct Submission to Genbank (17-MAR-1992)Richard P Oliver, RL School of Biological Sciences, University of East Anglia, RL Norwich, NR4 7TJ, United Kingdom. XX DR GenBank; Z11866; Positions 1 7396. XX SQ Sequence 7396 BP; 2302 A; 1913 C; 1794 G; 1387 T; 0 other; taagagacgg taatagacta tagtaaggag cttaagatat cggtatacgc actagataaa 60 caatagctag ctatataccc ttatatattg ttacccgtaa taatataata tagtgttacg 120 gatcggacac gaccgaagga gcgtcagcca atcaatagcc cgcactaatg acaggcgcgg 180 cccacagcta ggcgggcaca gccgctgcag agtgcctgga gtgcctggag tgcctggagt 240 gcctacggac ttaggcacag taggcacgat aggcacggta ggcacaggaa aggaatggaa 300 tttcctttgt atttaggaac gcatcgtacc cttatggttc gaggcgttca actcactgtt 360 caatatcact gtttggaata caccacaacc caacctctgc ctcactgctg cttggtcttt 420 acaagacgag acagctactg cttcatcact ctccctcacc ttccatcggc cacgagacaa 480 aacccgattg agcttggtct tctgatcttg tgatatcatt aggttatacc aaacctaaca 540 gctttgaacg ccctcaacga tgggagatcg acagagtgac cggggaacac ccgcccccag 600 tgaagcaagc agagcccgac gacctcagac cgcgaacgat gctatcaatg ccttggctac 660 tcatacaggc aacgaatcct caaggttggc aaccagagtt cttctatggc gaccgagtca 720 agttcgacac ttgggtctct cagatggata tgtacttctt gttcaactcc atgactgaga 780 acctcaagcc tatctttgcc accaccttct tgagaggacg agcacagcat tgggtcaaac 840 cattccttag gaaatacctg gatagcaacg gagaagacaa tgctgacgga gtcttcaagt 900 cttacaacca tctcaagcat gctatgaaga gcgtctttgg tgtctcgaac gagattgcca 960 ctgccgttcg tgttattcag cacttgactc agaagacttc cacagccgaa tatgctgcca 1020 agttccagga atacgcgcaa ctcaccgatt gggacgacga agcacttcaa gtcatgtatc 1080 gaagaggact gaaggagcat gtcaaagacg agttgatgag ggacggtcgg aagatcgatg 1140 gcttaggcga cctagtccaa gtcacgatcg atcttgacga caagctctac gagagagcta 1200 tggaacgacg atacgactcc aaggtatctg gaaaggccgg atacacgcca ggctacgaca 1260 accgtaacag aggtttcaac gacaactaca acaaacccaa ggacaagccg tactacggac 1320 cacagccaat ggagctcgac gttaccgaga aaggtcgcaa gatcaggaac agcaagggga 1380 acagaagacc cccgagttca agagaaacac gaacttgcta tggatgcggc aaacctggcc 1440 acatagcaag ggactgccgc ggtaagaata tggtgcgccg cgaacagttc aacatgatgc 1500 aacgacgaac tagtaaatct gagagcagtg ttgagtctct gggagacatc gactatactc 1560 ggagagtgga ggagagagct agcaatggaa gcacggagcc tctcctggac ccctcacaag 1620 gacgaggagg atgccatggg cagcaaatgg tggtcattcc attcgagctg cagaaccagc 1680 cacgacagtt caacatgatg gcacgaagag tcgactacga aatcgagtcc gaatctcgaa 1740 atggtcacgg aagccttcat tggcgattct gttaccaaga ctcgtgtcag gttcactact 1800 ccgcgaaatc aggagcaggg tattggcctc agcaaccgcg aggaaccctg ggagcaacac 1860 ataggcaaga cgccacgctc caagaagtgg acatcgacga atcctgcttc gacgacgatg 1920 gaagcgacaa agaaaatcag gacccaggat ggaacggatc gtggtcaccg gaaccacagg 1980 aagaaagtca agaaaccacc gggctggata ccatcgagga agaccaggat ccggaagaat 2040 caagcgaaga agattcctcc gaaggagaag agagcgacac tgacgacgac aacgaacaaa 2100 tgaccttcac cgtagacgca ccgaagaagc tctacgacat gataattcac ctgcaacgaa 2160 ggcatgaaga attcctaccg aggataggcg gacgacgaat gctacactcc attgagtttg 2220 acaagacact cgacacccta cgaggcatgg cctggggata cccactcatg gaaacgaccg 2280 aaaacctagc aactgctgtc acagagcgac cgccgatagg aagtagaatg ataggtaccg 2340 gatacctcac accgtcagga acattcgtat caaacgaatt gcgcaacatg gtgcagcacg 2400 cacgcgcact ctactcagaa acgcagaaga tccaggaacg tcatcgagta cagatgtgga 2460 cacagaaagg ctcgcgccag gttcaagcgg aggcctcgag acacgaagca cgacgttcca 2520 catacgaaca gggaaaagga tcaactcccc aggaatgagc gaccgaaggg agttatgcaa 2580 cacagaaaag gctcaagcat caccaacgac aacagtgttt cgaaccaaga ttatcgtcaa 2640 cgggcacaag acagatgcca tgatagattc cggagcgagc gggaattttg cctccgaatc 2700 atttgttaca agaaacagga tcgctacctg taagaagaaa gagggttatg aattgatcgc 2760 ggtagacgga tcatccttac ccagcgtgga gcgcgagacg ataccgctac cacttgctat 2820 ccaacggcac cacgaggaga ttaccttgga tgttactgat atggccagtc atgacatcgt 2880 actaggtatg ccttggttga gaaagcacaa cccagtaatc gactggagaa gaggagtact 2940 cacatttagg gaatgcgaat gcgttatcga cattcagcct gcgcagtggc agcgttcact 3000 ggcagatgag gcaaggaaac agctcaacag gatacagctt gcgccgacta gaaggacaga 3060 agaaccacct tcgaccggga cagacactgg cgtggggccg ccgggtcacg aagtcactgg 3120 aagtgatgga agtaacgcac catcgaagga taccaacatc tcagagttga gtattcccaa 3180 ggagtatcgc aagtggtcgc gactctttga agaggaaaga ggcaaggacg ccttacctaa 3240 gcaccaacca tgggatcaca agataaacat tcagccaggg aaagagcctc catggggacc 3300 cctatatcaa atgtctgaga aagagctaca gaccctacga gaatggctga aggagaagct 3360 agccaaagga tggatacgac gatccacctc aagtgcagga actccatgca tgttcgttcc 3420 aaaagcaaac gggaaactac gactcgtaca agactaccga aagttgaacg agatcacgat 3480 caagaaccga tatccgctac ccaacatcga agaagcacaa gacagattaa ccggatcaga 3540 ctggtacacg aagattgacc tacgagacgc cttctatgct atccgaatgg cagaaggaga 3600 agaatggaaa accgctttca ggacaagata cggactctac gaattcttgg tcatgccaat 3660 gggattgacc aacgcacccg catcctgcca ggaccttgtc aacgaaacac ttagagacct 3720 actcgacgtg tgcgtcgttg cttacatgga cgacatactg gtctacacaa aaggatccct 3780 ccaggaacat accaagcaag ttcaagatgt gttcgaacga ctcacgaagt ccggattcaa 3840 gacagcaccc gagaaatgcg aattccacaa gaaagaagtc aagtttttag gctttatcat 3900 cagtacaaca gggataacga tcgaccctgc aaagacacag tcaatcagag aatggccaga 3960 accgaagaca gtcaaggatg tacagtcatt ccttggactc gccaactaca accggaaatt 4020 cattaaggac tattcaaaga cagcagcacc aatgacgatg cttacaagaa aagacgtcaa 4080 ctggaaatgg ggaaaagaac agaccgaagc gttcaaaaga ctcaaggaac agtgcgcttc 4140 agccccaacg cttcgactat tcgatggtag caaggaagtc cacatcgaga ccgacgcgtc 4200 tgatatggca ataggcgcat gtctaacaca gacacacgat gggaaaagac acccagtggc 4260 ctattattcc cggaaaatga ccacagcgga acagaactac gacatccatg acaaggagct 4320 tctagccatt gttgccgcca tgcaacattg gagagtgtac gtcgagggcc caccgaagtt 4380 aacgattctt tcagaccaca agaatctcac gtacttcacg acgacgaagg aacttacccg 4440 aagacaagcc cgctggtcgg agctgcttgg gcagtacaag ttcgaaatca aatacactcc 4500 aggaacagag aacggcccgg cagatgcgct gagccgaaga agcgattaca tggaaggaaa 4560 agaaccagtg caacacaaaa tacttaagac aaaccccgac ggaagtctta gtgccaacac 4620 gagagagttc aacaacattg tacgaatcct aagcgacaag gaagaacagt tccctatatc 4680 gcaaggaaag taccaagtac caaaggatcg agaagaagaa tgcatacgac aacatcacga 4740 cgagccaaca tacggacatc ctggaacttc aaagacagtc gacctaatac agcgcagctt 4800 ctcattccca cagatgagac ttaaggtgct acgctacatc aagaaatgcg tacactgcca 4860 acaaaacaaa gctgcacggc acgcgaaata cggtcaccta cagttcagga caccaccaac 4920 gaaaccatgg gacgaggtta cgatggactt cattacgaaa ctcccgaggt caaaggatcg 4980 agtcacagga caagcctatg acatgatact agtcatggtc gacagactca caaaatatgc 5040 acacttcatt cctgcatcag aaatatacac tgcagagcag ctcggatacc tcgtactgga 5100 cagattgatc cgatatcacg gattcccgga agtattcatt acagacagag acaagctctt 5160 cacatcaaac tactggaaga cgctcatggg aacgattgga atcaagcaca agttgtcaac 5220 agcataccat ccagagacgg atgggcaaac ggaaagaacg aaccagacac tcgagcaata 5280 cctacggcac tacatcaact acgcacaaga caactgggtt tcattactgc caatggcgca 5340 gatcgcactg aacaaccaca aatcagagac aacttcgacg acgccattta tgcgaacttt 5400 ggcaaggacc ctaacctatc cggaacacct ggatcccacc cacaggccga gagagcaatc 5460 gtgacgacgg aaactctcaa ggaagtgcac aaagaagcac gcaaggcgat cgaagatgca 5520 caacaaagac tgtctcaacg acggcaagac gagagaaaaa tggcacctct gctaaaagag 5580 ggggataagg tctatctcct cacaaaaaac ctgaagacaa gaagacagac caagaaactg 5640 gatcacgtta aggtcggacc attttttatc gacaaagtcg taggaccagt caactaccga 5700 ctacgactac cacctgatgc gaaaatccac ccggtcttcc atatctccaa gttggaacca 5760 gcggacgccg aaacaccttg ccaggagagc ttccatttcg agccggaagc agaaaacgaa 5820 tttgaagtcg aaaaaatcct agacaagaag ggtcagcgat accttgtcaa atggaaagga 5880 tacgacgaat cagaaaatac ctgggaacca agaattaatc tggcgaactg ctaccagctt 5940 ctgcgacagt tccagaagtg gcgccaagat tcccggaaac aagaagctca ggaacggaga 6000 gcaagtccgg atcagaccag aagtcgtccg aaataccctc acgcaaggac caagtaggag 6060 gggaaagaga cagcgaggga cctgggacca cgtcttcgtc cggaagctcc atgagggcag 6120 cctcctccac tgcgatcgcc tcggtctctc gacgctctag aagctccagc tccctttgga 6180 gacgggcctt cttctcccaa gcggcggcct cttcctcctg tatcctccgg cgcacgacct 6240 cttcttcctg tatccttcga agcgaagcct cgtatgcttc attaagctcc cgcatctttc 6300 gacgatgctc cgacaccttt ttctcgagag cctcgcgctg acggcgcaga cgcgaccatt 6360 ccgcctctgt aaccttgaca ttacagtcgc gacgattttc ctttgtacag acaccacacc 6420 gaccagaccc gacatggaca cgacagacga cttcgtctcg cgacagtgga gacagggacg 6480 aaccatgatt tcgcccaggg cttcgatttt ctcggattga cgaatgcgac gttcggtgct 6540 ggaaggtttc agcttgggca tgttgaagga aagaagagag ccatgacgac cgctcaaccc 6600 aaggaaacct cgattattca taagctcggg acgagctaag ctagagaggg gatggtgtta 6660 cggatcggac acgaccgaag gagcgtcagc caatcaatag cccgcactaa tgacaggcgc 6720 ggcccacagc taggcgggca cagccgctgc agagtgcctg gagtgcctgg agtgcctgga 6780 gtgcctacgg acttaggcac agtaggcacg ataggcacgg taggcacagg aaaggaatgg 6840 aatttccttt gtatttagga acgcatcgta cccttatggt tcgaggcgtt caactcactg 6900 ttcaatatca ctgtttggaa tacaccacaa cccaacctct gcctcactgc tgcttggtct 6960 ttacaagacg agacagctac tgcttcatca ctctccctca ccttccatcg gccacgagac 7020 aaaacccgat tgagcttggt cttctgatct tgtgatatca ttaggttata ccaaacctaa 7080 catatagaaa ggctcgaggc cttatagatt ctacttctac ctctctcttt cttgactaga 7140 aatttatacg caaatacata atacccctaa tccctttgac gtaaagccga cgactaatac 7200 taggagatag aacggctact acacggcaga ttatatacgc ggcccttata gacgtagtta 7260 tcggcgatta ttacgagcaa atgttatact acgtcaccga cctcgaatat aatatcgtct 7320 ttagcctacc gtagcttata gcgtataacc taaacatctt ctaggagata ggcgaggtgg 7380 catttagatc tgcagc 7396 // ID Copia-10_PIT-I repbase; DNA; PLN; 5827 BP. XX AC AATU01002683; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_PIT_; KW Copia-10_PIT-LTR; Copia-10_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5827 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002683; Positions 205341 211167. XX CC Positions [2032-2571] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 298..4653 FT /product="Copia-10_PIT-I_1p" FT /translation="MPRSASSDAPTAGDDGDVEMGQENPPVIQSFTAQKRD FT ELKRAEKLRAKSQRLSSKKLRLNEAKAKAFLIKTIDDQHVLMVKDKTTAFE FT IFQTICSKYEGAAIHGDPYHVLSYLMALRYEEGSDLTGFIIDIESAMKVAS FT EATNSVLSDEQKSLYLYHALPGKWKQQLSVWKGSRKFIPYEELKRHIEAKV FT QHELAKNRYTLKQGTPESRETRNEQALQALAPEPTLVQAPYQESKALISTM FT SCTYCLRTNHDTVDCYVLQRHLQNGQVKAGTVLPANFKLKPSSNQARQHPY FT KDGFGGKSRSQNRNDYKSKRNSNRNRSQNGNQKNTSEKSKSHNKFHGRRKD FT TDSDNEYGIIAITTLDLRQETEAVSLTAQDAEHDPVWTVDSGCTRHVTSNP FT KWFEKLIPSAGKSITVGGNHQIPIKGTGDVKMTIKDTKGKEREISLANVLY FT APQLKFNLLSVRQAVEDDFKINFPNAKKCVLFFASRTKFEAKIGEGTRLYQ FT FQASPATSSQVAHVATSGKPDNVILWHKRMGHPNFRIMQDLAKANTVMDMG FT LKDFDSKKDYFCSSCTYAKAHRNPFNKRTVERAKFPLEKVHSDMAGPLPVP FT TLSGCQYFLTFIDDYSRYMFIYIIKRKSELYECYEDFRKKAQNVFRADVSE FT LQFNENIHDEEVRHLQSDNAREYEKLGKMIFQKYNTHAQFTNAYTPQQNGV FT AERRMRTLLERTRAFLIDGNLPQVLWGECVKHVADLLNITPSSVTDKITPY FT EKWFKRKPSAHYIKVFGCTAYAHIPEIHRTKLEPRAKKCMYLGLPSNKKGY FT RLLDTKENRVIYSRDVVFREDEFPHLEFLNTPAISDQNGPAPTLSPSLPTP FT QLLPPIASLLKRSVNALAAEVVVKMKKVKHKTNAQNENEHSCLLDDPLDIN FT ERKEHLTHIYALLAIRHISEPKTFLESQKLPEAQHWEKAAICEYKSLIDNK FT TWVLTKLPTGRRALQCRWVFVVKYNGDGSIDRYKARLVIKGFLQKYGVDYD FT EIFSPVIRMEVLRLLLTIAALLDLEIHQMDVKTAFLNGYLDEEIYMLQPEG FT FTVRGKEHLVCKLLKSLYGLKQAPRIWYLTLCSFLLTMKFHKLIKDQCVFI FT GVVDGATCYILVYVDDLLIIAPTLDIINNIKNALKQRFKMSDLGEAQYILG FT WSIVRSRTDRTIFIHQEKYATKVLDRFSHLDAHPVGTPADPSVKLTEAMCP FT QTPEEKHEMKAIPYREAVGSFMYLMMGTRPDLAYFLREVSQFLVNPGKPHW FT NAVKRGLKYLNGTRNLGITLGGKQNLEQYKSKHYLTAYSDADYANCPETRR FT SVGGYIAYMCGSPISWQSRKHHTVVLSTTEAEYIALCHCMQEVIFLKLLLV FT ELKHESSHAITLFEDNQSCIKLSYNPELHGRSKHIDIRYHFVQEKVERKEF FT EIMYCNTKEMVADIFTKALSKPLFINLRGSLCKTLIQK" XX SQ Sequence 5827 BP; 1810 A; 1464 C; 1274 G; 1279 T; 0 other; ataggttatg agctcaacgc aagcctccac cgctgacgac cgcgagtttc gcgcctcaat 60 ggccggaact tcatcatctg gaagacccgc gtcactgccg ccctcgaagg aaagaacctt 120 tctcggctac gtcgagcgta tcgactacac cggtgactcc gactacgagt tcgactccga 180 tgaagagctc aaaccggcac tgtccgacat gaacgacatg tccgccgcgc tttgatgctg 240 ccggtgctcc caaggccgac gaaatagtgg gctcctcacc gagcgagtcc tcctctgatg 300 ccacgctccg caagttcgga tgcacccaca gccggagacg acggcgatgt ggaaatggga 360 caggagaatc cccccgttat ccagtcattc actgctcaga agcgggatga actgaagcga 420 gcagagaagc tgagggctaa aagccagagg ctgagctcga aaaagcttcg actcaacgag 480 gcaaaagcaa aagctttcct tatcaagacc atcgatgacc aacatgttct catggtcaag 540 gacaagacta ctgcgtttga gatcttccag acgatctgta gcaagtacga aggtgctgcc 600 atccacggcg acccgtatca tgtgctatca tacctgatgg cactgaggta tgaagaaggt 660 tcagacctta cggggttcat aattgacatc gaatctgcca tgaaggttgc ctccgaagcc 720 acaaacagtg tgctcagtga cgaacagaag tcactctact tgtaccatgc gctacctgga 780 aaatggaagc agcaactatc ggtctggaag ggtagcagga aattcattcc ctacgaagag 840 ctaaagcgtc acatcgaggc caaggtgcag catgaactgg cgaaaaaccg ctacacgctc 900 aaacaaggaa cacccgaatc gagggaaacc cgaaacgagc aggccctaca ggctttagca 960 cctgaaccaa ccttggttca agctccctat caagagagca aggctctcat ctcaacgatg 1020 agctgtacat actgcctgcg caccaaccac gatactgtcg actgctatgt tctacagcgc 1080 cacctacaaa atggtcaggt aaaggcagga acggtgcttc ccgccaactt taagctgaaa 1140 ccttcgtcca atcaagctcg acagcatcct tacaaggacg gtttcggcgg caagtcacga 1200 agccaaaatc ggaatgacta caagagcaag cggaacagca atcgaaacag aagccagaac 1260 ggcaaccaga agaatacatc tgaaaaatcc aagagtcaca ataaattcca cggtcgccgc 1320 aaggacaccg actccgacaa cgagtatgga atcatagcca tcaccactct ggacctcaga 1380 caagaaacag aggctgtaag tctcaccgcc caagatgcgg agcatgaccc agtgtggact 1440 gtcgactcag gctgcactcg ccacgttacg tccaatccga agtggtttga gaagctgatc 1500 ccaagtgctg gcaagtcaat cactgtcggc ggcaatcacc agattccgat aaaaggaact 1560 ggtgatgtca agatgacaat caaggacacg aagggaaagg aacgagaaat atccttggcc 1620 aacgtgctat atgcgcccca gctgaagttc aacctactct ccgtgcgcca agccgtcgaa 1680 gatgatttca aaatcaactt ccccaacgcc aagaagtgcg ttctgttctt cgctagccga 1740 accaaatttg aagccaaaat tggtgaaggg actcgactct accagtttca agcgagcccg 1800 gcaacctcaa gtcaggtagc ccatgtggcc acttcaggta agcctgataa tgttatactt 1860 tggcataaac gaatgggtca tcctaacttt cgcattatgc aggatctggc taaagccaac 1920 actgtcatgg acatgggcct gaaggacttt gattccaaga aagactactt ttgctcttcc 1980 tgcacatacg ccaaggccca tcgtaaccca ttcaataaac gtaccgttga acgggcaaag 2040 ttccctcttg aaaaagttca ttctgatatg gctggtccat tacccgtccc cacactctcg 2100 gggtgtcaat attttctgac ctttatagat gactactcac ggtacatgtt catctacatc 2160 atcaagcgaa agtctgagct gtacgaatgc tatgaagatt ttcgcaagaa agcacaaaac 2220 gtttttcgcg ctgatgtaag cgaactccag ttcaatgaga acatacacga tgaagaagtt 2280 agacatcttc aaagcgacaa tgcccgagaa tatgagaaac ttggaaaaat gatttttcag 2340 aagtacaata cgcacgcaca atttacaaat gcgtacacgc cccagcaaaa tggagttgca 2400 gagaggcgca tgcgtacact actcgagcga accagggctt tcctcattga tggtaaccta 2460 ccgcaggttc tttggggaga atgcgtcaaa cacgttgctg accttctgaa cattactccc 2520 agctcggtaa ccgataagat caccccatac gagaaatggt tcaagagaaa accatccgcg 2580 cactacatca aagtgtttgg gtgtactgcg tacgctcaca tccctgagat acaccgcaca 2640 aaactagaac cacgtgctaa gaagtgcatg tacttaggac tcccatcaaa caaaaaggga 2700 tatagactcc ttgacacgaa agaaaaccgt gttatctaca gcagggatgt tgtgtttaga 2760 gaagacgagt tcccacactt ggaattcctc aatacacccg caatctcgga ccaaaatggc 2820 cccgcaccga cgctatcacc gtcgctacca acaccacaat tgctacctcc aatagcctca 2880 ctactaaaac gcagcgtcaa tgcgcttgcc gcggaagtag tagtaaagat gaagaaagtc 2940 aaacacaaaa cgaacgctca gaacgagaat gaacactcgt gtctacttga tgatccactc 3000 gacattaacg aacgaaaaga gcacctcact catatctacg ctctattggc tatcagacac 3060 atatctgaac caaagacgtt cctagaatcc cagaaactac cagaagcaca acactgggag 3120 aaggcagcca tttgtgaata caaatcattg attgacaaca aaacgtgggt cctcacaaaa 3180 ctaccgacag ggagaagggc cctacagtgt cgatgggtat tcgttgtaaa atacaatgga 3240 gacggcagta ttgaccgcta taaagctcgc ctggtaataa aaggtttttt gcaaaagtat 3300 ggcgttgact acgatgagat attctctcca gtgatccgca tggaagtgct gcgactttta 3360 ctgacgattg cagcactcct tgaccttgag atccatcaaa tggatgttaa aaccgctttc 3420 ctgaacggat acctcgatga ggaaatttac atgctgcaac ctgaagggtt tactgttcgt 3480 ggaaaagagc acttagtctg caagcttttg aagagcctat atggtctcaa gcaggcacct 3540 cggatctggt atcttaccct gtgctctttt cttctcacca tgaaattcca caaactcatc 3600 aaagaccaat gcgttttcat tggagttgtg gatggagcta catgctacat tctagtctat 3660 gtggacgacc tcctcatcat agcccctacg cttgatatca ttaacaacat aaagaacgct 3720 ctcaagcagc gcttcaaaat gtctgatctc ggtgaagctc aatacatctt aggctggtca 3780 atcgtgcgca gccgtacgga ccgaaccatt ttcatccacc aagagaagta cgctaccaaa 3840 gtcctggatc gcttctctca tcttgatgca cacccggttg gtacacccgc tgatcccagt 3900 gtgaagctga cggaggccat gtgcccccaa acgccagaag aaaaacatga gatgaaagcg 3960 atcccgtaca gagaggcagt tggtagcttc atgtacttaa tgatgggaac tagacctgat 4020 ctcgcatatt ttctacgaga agtcagtcaa ttcctggtga acccaggaaa acctcactgg 4080 aatgccgtta agagaggatt gaagtactta aacggtacgc gcaatcttgg catcaccctt 4140 ggtggaaagc aaaatctaga gcagtataag tcaaagcatt atctcactgc atactccgac 4200 gcagactacg ccaattgccc agagacacga cgatctgtgg gaggctatat cgcatatatg 4260 tgtggaagcc caatttcatg gcaatcgaga aagcaccaca ccgtagttct gtccacaaca 4320 gaggcagaat acatagccct atgtcactgc atgcaagaag ttattttctt aaagcttctt 4380 ttagtagagc ttaaacacga aagctcacat gctatcaccc tatttgagga caatcaaagt 4440 tgtattaaac tttcctacaa cccagaactg catggcagaa gcaagcacat tgacattcgg 4500 tatcactttg tacaagaaaa agtagagcga aaagaatttg aaattatgta ctgcaacacc 4560 aaagaaatgg tagcagacat ttttacaaaa gcactatcaa aacccctttt tataaatcta 4620 agagggtcac tatgtaagac acttatacaa aaataagaaa aagaaaaaaa aggaaaagaa 4680 aaatactaat cgatatgtaa aatttataca gcaacaagtt ttgttaaaag taaatacgta 4740 ttatttaaat cttaaagatt agcacgagga atgtcctcaa ttgagtacac accatctact 4800 gtctcaaaga aacttgtcaa aagctcctcc cggttaggga agaagtgata ggtgtcggaa 4860 tcgatgaaca caaacttgtt accaacccag gcacgagcga tacaatgcca tgtacctgct 4920 cgttgcccag gccgcctacc tataatcagc agagccgatt ttcgactccg cacgatggag 4980 gcaggtcgct tgggtctgct cttgaacccc gactttgtgt tcagataaat cagctgtttg 5040 cgccgcttct gcaagccctt ctgcaacgca tccatagtgt aggcaccgta gcgtggatgt 5100 ccatgatcca cacttgggct cacctctacc aaccgagcca aaataggccg caacatggct 5160 ggggtgataa aatccctagt ttgaagagcg ttgctgatcg ataagagact gcacattgag 5220 taccggtccg acagcatctc ttgatgctgg cacaaaattg atgtgcgaag actgacaggc 5280 atctgtgtat acaaaagata gtatattaat actgtgcaaa tcacatgaac catagcagca 5340 aaatattgat tgcagtaaat caatatgaca aaacccaagg ttattgagac cagtggagac 5400 gattcgctac cgagtgaaac aagttcactc agagctagcc cagactatag cgtcaggcgc 5460 gcatcgcact aagtctcgct cccttgagga ttgcacttga tcaacacctt caatacttgc 5520 atgcaaatca gaagaaaacc gcacctgtgc aaaagttgaa agatcaggaa atgaacactt 5580 aatgcactca acgagaacga tacggaagag aaagcaagcg tatttcactg atacttaaac 5640 tgcacgacgg taaagaactt tgcgaccttc ggaaaggtat agacatactt tctagcaact 5700 cactaccgca agaaacagtc gattatcctc gaagtagtaa tttaagtcaa agtcctcaac 5760 gtcttgaatg caaatcagct gcaccatctg ggataagaac tgcccccaac ttgggacaca 5820 gagaggc 5827 // ID Helitron2_PPa repbase; DNA; PLN; 5459 BP. XX AC . XX DT 03-NOV-2009 (Rel. 15.07, Created) DT 03-NOV-2009 (Rel. 15.07, Last updated, Version 2) XX DE Helitron-like element - consensus. XX KW Helitron; DNA transposon; Transposable Element; Helitron2_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5459 RA Jurka J.; RT "Helitron elements from moss."; RL Repbase Reports 10(7), 961-961 (2010). XX DR [1] (Consensus) XX CC This is a relatively old family (the youngest copies are ~15% CC divergent from consensus). The ORF cannot be fully reconstructed. XX FH Key Location/Qualifiers FT CDS 1544..2992 FT /product="Helitron2_PPa_1p" FT /translation="GSSYLFAPSLCSFFPHRTLGWHLDLRAQNVVMDIVEE FT REGAGREDWRGNNLTQMDYFAYRLFLRPTKYSTILHGRKLLQEFMVDGWAA FT TKQSRLRYLRYNQGNLRADLYQGLVDAVVTHQSIGHEEGRYELNNLGRKIL FT LPSSHIRSARHMIEILQDSMAITRFYQHLDIFMTVTANPRWSKIQNELLQG FT QRASDRPDLVARVFELKRRAIMEDIKKGVVFGHVVAHVYTIEFQKRGLPHM FT HILIFLDRESKIRCAGDVDRMVFAEFLDKDNDRELFEVILQCMVHGPCRMQ FT NPQAPCMEDGRCTKRYPKVFVEETTMDADGYPQYRRRNDRRTFEVRGMVVD FT NRDVVPFCPKLSQKYNCHINVEVCASICAVKYIHKYIYKGHDRITMQFENQ FT QDEIKQYLDARYIGAPEAAWRLFGMRIHEEMPNIVCLAVHLLRMHQVVYDP FT NDEAAAILERAERQKTTLTSFFETCAAIAVARQYTYQ*" XX SQ Sequence 5459 BP; 1761 A; 864 C; 1042 G; 1787 T; 5 other; agtttcattg taggttggat attttgggcc gtcttgctcc agagcaagca aacgaattca 60 tttgcaatat ttttatgaca atcaaagttc acttgctcta gccatgtcaa atttactttt 120 attcacgccg aaattgcact ttgcaaatga aagctgttgg taatggttaa ttaaattnca 180 canccttcgg ctatcatctt tctctcttct atagcagaag ctaggatatc attgtcaagc 240 atagatttat ataggaattt tgtaagaaat aaagtcatct tnttaattta atagttttaa 300 ttttataatt atatttatag tttttatatt tattatatta tatttcatat tatatcttca 360 ttgtaaacaa aattcttgag caacaaagtt ttattggaat tttagaagta ttgtcaacta 420 caacaagaat tgttgtacaa aaattaaatt gtaggaattt catttcttgc tcttatatga 480 aattttttat attcaacttc atatgtataa atatatatat atatatatat atatatattt 540 atatatatat atatataaat aaataatgat atattattta ataantatgg aaatatnaat 600 tttatagaga tacaatttta caaggtttta ttgaatttta tggaggtaca attttgacac 660 ttacaagctt actccaattg tctggtggaa cccgtgccat tgtgaacggt ccagctttaa 720 taatgaatcg aagagcaatt gctcaacgat agcataggaa acgtgagaga gcacaaagag 780 aagctgaaat agttacaagt attgaagcca tacataatct agggaggatg aatgttttgt 840 gtcctcattg taatgcattg cattggtttg atgaacattt agcccggtcg ccaaggaagt 900 tgccattatt tggacaatgt tgtcgtcaag gaaaagtttc tctaccatct ctaccttctc 960 cgcctttgct tttgagatgc ttattcgaag accaagatgc aagagcaagg gagttccgag 1020 aaaatatccg tcagtacaat gttgcacatg cgtttacgtc cttaggtgca aatattgatc 1080 gatctgtgct tcaaagaaat gctccatata attttagaat aaatagagag ttgcgccatt 1140 tagcaggagc gttgttacca gaagaaggta tcgatccaac ttatgcacaa ctctatatcc 1200 acgatgcatc atttgcacaa gatagaagaa tgagacgtaa tcgtggttta ttgagccaaa 1260 ctatgtagaa aattggagaa gttttgaagg agaataatcc gtttattgga ttatatagac 1320 aggcacatga aatactatct caagcgcgga atgaaggagt agtagaagta gatcttgttg 1380 tttctttgca cttcatgaat gaaagcgata gacgccgata taatctttcc actacttttg 1440 aagaaattgc tattatattg cttggagatg gatcggagca taatgcactt cgtgatatta 1500 ttatttgcct acgtagtaat ggactattag aaaggattca tgaggctcat cttacttatt 1560 tgccccttca ttatgttctt tttttccaca tagaaccctt ggatggcatc ttgacctaag 1620 ggcgcaaaat gtagtgatgg atattgttga agaaagagaa ggtgctggac gagaggattg 1680 gagaggcaac aaccttacac aaatggatta ttttgcttat cgactttttt taaggcctac 1740 caagtattcc acaattttgc atggaagaaa gctattacaa gaatttatgg ttgacggatg 1800 ggcagcaact aagcaatcac gtttgcgata tctacgttac aatcaaggaa atctacgtgc 1860 tgatttatac caaggattgg tggatgctgt tgtaactcat caaagtattg ggcatgaaga 1920 aggacgatat gaattaaata atttaggacg taagatctta cttccatcat cacatattag 1980 aagtgcaaga catatgatag aaatacttca agattctatg gcaattacaa ggttttatca 2040 gcatcttgat atttttatga cagtgacagc aaatccaaga tggtccaaaa tccagaatga 2100 attgcttcaa ggacaacgag caagtgaccg gccagatttg gttgcccgtg tatttgagct 2160 caagagacgt gcaattatgg aagatataaa gaaaggagtt gtctttggtc atgttgttgc 2220 acatgtttat accattgagt ttcaaaagag aggtctacct catatgcaca tcttgatttt 2280 tttggataga gaaagcaaga ttagatgcgc tggagatgtg gatcgtatgg tttttgcaga 2340 atttctagat aaagacaacg atcgagagct atttgaagtt attctacaat gcatggtaca 2400 tggtccatgt agaatgcaaa atcctcaagc gccttgcatg gaagacggtc gttgtacaaa 2460 gaggtatcca aaggtatttg tagaagaaac aacaatggat gccgatggat atcctcaata 2520 tcgacgaaga aatgatagaa gaacgtttga agttcgagga atggttgttg ataataggga 2580 tgttgttcca ttttgtccaa aactatctca gaagtacaat tgtcatatta atgttgaggt 2640 atgtgcatct atttgtgccg tcaagtatat ccacaaatac atctataagg gccatgatcg 2700 cattacaatg caatttgaaa accaacaaga cgagatcaaa caatatttgg atgcaagata 2760 cattggagct ccggaggctg cttggagact ttttggcatg cggatccatg aagaaatgcc 2820 aaatattgtt tgtttggccg ttcatcttct aagaatgcat caagtggtat atgatccaaa 2880 tgacgaggca gctgcaattt tagaacgtgc tgaaagacaa aagacaacat taacttcatt 2940 ttttgagacg tgtgcagcaa ttgcagtggc aagacaatat acataccaat aatttctaca 3000 acattttgtt tggcataaga caagaaggac gtggacgtta aaaaaatatg gatttgctat 3060 tgaaagatta tattttgtaa atcctgcaat ggaagaaaga tattatttga ggcttctatt 3120 aatccacgtt aaagatccac aatcatttga gcacttaaag actattcatg gaattttcca 3180 tccaacattt aaaagtgcat gtgcagcttt aggattgctt gaagatgata gagagtggca 3240 acaatgtttg gaagaggcat caagaataca aattggatct caattgaggg cattatttgt 3300 tattttgcta ttgcacgaaa atctgctaaa tccattaaac ctatggaaaa gattttgaaa 3360 aagcatcttg gatgatctca atgcccgttt gcaaagaaaa catggaatta gcaatccaat 3420 agaagaacaa attaaggatt ttggactttt cttgctagat aagattttgc aagactccga 3480 cagaatgctt gcacaatttc ttccaatgcc attaccaaga aacaattgga atgcaatagt 3540 taatggaaat cgatttattg ctgaagaaag agcatgggac attcaacaat tagaagcaaa 3600 tttggagcag tatgttccac aattgaatct tgaacaaaga aaggcatatg atgatattgt 3660 ggcctctata atggaagaac atggatgcat gttttttcta aacggacctg caggaactgg 3720 taagacattt gtctacaata ctttggcaac taaagtttga ttgatgcaaa agattgtcat 3780 atgtgttgca tcatcaagaa ttgccgcatt gctacttgaa ggaggaagaa ccgcccattc 3840 tacgttcaag attctactag attgtaacga agactctttt tgttcaatta ctaagaattt 3900 cgaccatgct gagtttattt gccaaacttc gcttattatt tgggatgaac ttccaatgca 3960 acatcgttat tgtcttgagg cagttgatcg ttcttttaga gacattcgag atattgatcg 4020 cccatttgga ggagctacaa tagtttttgg tggagatttt tgccaaatat tgccagtgat 4080 tgtgaaagga actcgagaag aaattgtagc agcatctttt tgacgttcaa cactttggcc 4140 tcaaataaaa atccatacat taaaagaaaa catgaggttg aattcaagag cacttcaagc 4200 agatatcgag tttgctaatt ggcttcttca ggtatagaat gcacacacac gttgtatata 4260 tagatggtgg tgcatttgaa ttctttatgg ttgcattatt attgactaat atttctattt 4320 gccacttgcc agattgaaaa cggtacaaac ttattgcccg ataatgtagt tacgcttctt 4380 gatcacatga ttgttgatca acaattaatg tccttagttg atgttgttta tctaaggctg 4440 gcagaagacg gtgtagcaaa tgatgccttc tttagagata gaatcatttt atccgcacgg 4500 aatgatgatg tagaggatat taatgagaag attatggcca tattttctag agaagaacaa 4560 gaatatctaa gcgccgatga agttgttgtc gaagatggta tcgacaacaa taatgtttat 4620 ccagtcgaat tcatcaagtc gcttaatcca tctggaatgc ccagatcaag gctttgtctt 4680 aagattgaga ctccggtgat gctactaaga aatattgctc ctcgccaagg actttgcaat 4740 ggaatccgat tgataattac acgactaatg gatcgagttc ttgaagcaag aattcttaga 4800 ggaaaatttg ctggaaactt ggtgttcatt ccgcggatta cattaacttc tacaacaaaa 4860 gaacttccat tcattctaaa gagaaagcaa tttccaatcc gtcttgcatt tgcaataaca 4920 ataaacaaat cccaaggaca atcggtgaag catgttggtt tggatctacg acaacctatt 4980 tttttccatg gtcaacttta tgtagcactc tctcgatgca cttcctcccg ttctatcaag 5040 attcttcttc ctagaaacga caatttaaat tccacgctga atattatttt tccaaaagtt 5100 ttaattagat aaatattagt aatttatttt ttatatttta tattttaatt tatttattta 5160 ttgactttaa tacatctttg aatgtcttaa catactttta tgatttttaa tgtaatttat 5220 ttttttttat attttcacaa gtagttcctt gaacaaaatt aactactttt tttgcatatt 5280 atccgtgaca acggcacggg tttacctatc ctacttcgta gctgaaagct ccattgtgta 5340 ttttatttct ttctatttgt attgtattgt atttgtattt gaaaaatatt ctttggctca 5400 tattttcaaa aatagcttca tttgagtcac actttccatg acaacgacac gggttcatg 5459 // ID Copia-39_PIT-LTR repbase; DNA; PLN; 248 BP. XX AC AATU01011788; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-39_PIT_; KW Copia-39_PIT-I; Copia-39_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-248 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01011788; Positions 1387 1140. XX SQ Sequence 248 BP; 62 A; 69 C; 57 G; 60 T; 0 other; tgtgagcaca gtgcggcaca cggtctacat atcacgcgtc atcaagtggt aaaaccgcag 60 gtgcaacggt aacttgagtc atcttggcaa tttcaaggtc tacttcaagg taggacacga 120 cagcgtgctg gactggacac gatacccaag gactgcaggc agactaggtg taagcaggct 180 ttgcgtaagt tctaatctca ctcactttct aattctcctt gttcgcctca cccgcctcct 240 tccaacca 248 // ID Gypsy-2_ES-I repbase; DNA; PLN; 5989 BP. XX AC CABU01003737; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_ES_; KW Gypsy-2_ES-LTR; Gypsy-2_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-5989 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01003737; Positions 16450 10462. XX CC Positions [3745-4230] - Integrase core CC 'GCGT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1003..2925 FT /product="Gypsy-2_ES-I_1p" FT /translation="MSGGDADSDPEWAKSVALARSLDEAERALEAHRLAVV FT DGRPPPRTGRSNSKSRSRRAPVSRAFAIPTHNRFAVLSAPDLRQVAEGAEA FT PAEPSPVSTKPAHPVRQVGRSAAPAAGARGAKVETPAVGAVSVRSLEVDTG FT AVGSSRAPTGVRDARAASPVVPRSTPPTIEEHDAQKVAFATRKAVQVAVAA FT QVADLGARHREAASRWERLTAEDRVDHDRARQEARKVASSVQTQRESVEEM FT WVELHEAQQVRAAIEAKIADARSALGIMEARYRARTDDKSAVRGAREKDIK FT LAKIEADALAEELSAASEQQRRMRGAHTERLAAEESAARAKGASVLPAPPC FT RTGDEVRDGLERRERRRLADAALLEEAGAIPDGPGDTSSALEVSAPPVSGS FT AAAPAREETGDSVSLAREVATVMAQGSGFTFDQAMKLALATKKRKDCPPSS FT GSEDGEYRRGGGGRRGSHGGRAGHGDRGGGARGRSGRKRYRGADSSDGWSA FT TDSGGEYRGGGRGQRYGRGGGRYRSGKERTVHQHSGGSGDSDGHGRGFGGR FT TRGSRGRGGRGGGRGRYETDSGSGSEDEEARFVGKHGQVSLDAVPVLRTPV FT AVPPVCVDSATAVAPATPVDEVGLDSFTYVKPETSKLRAVARG" FT CDS 3460..4656 FT /product="Gypsy-2_ES-I_2p" FT /translation="MPAERPNRNPGEYERILGEEPVRTNVPMLLRPWVMDC FT AHKEAIHLGEKVTLGILKRYYWWIGQSQSVKWWCRACYACQARKTPRHTRR FT WPLVSLPLPSRPGEMVAFDFFGPLPQTKKGRQYVFLVVDLFSRYAEAYALT FT AAEKTAQGCSAILVQQYIPRWGCPHTFLSDRGAEFTAPVSREIYRMQETVK FT MFTSSYHPQTNGMVERLNHTLCQMLSHLIADDQKNWDEYLSTAIAAHNNNM FT SRGTGLSPNEIHIGRYTRLPMTILEGRGVKGHQSFKQDQLDYLELMRARQV FT KAYDLVKEGDRLIKAKHAKANEALVKELKTRRPKIEANDWVWLYNDQSTIT FT GGGKHVLKPQTIKSGERKSFALVSKLAYCWTGPTGCYLLDLEPRLMAEKWG FT LNWCS" XX SQ Sequence 5989 BP; 1296 A; 1457 C; 1983 G; 1253 T; 0 other; gtggcgtcgt cggcttcaag ctttgtctag cttgcttgtg cgtcgagtgt ccacggttgg 60 ggtcgtctgc acatcggcag acagcacgcc cgcgttctac gcggctgtcg atacgcgacg 120 taccgctcgg gtaccgcgca tcggggctga ggccgccgcg acactcgcta cccccgacga 180 cgggagcgtg agtccgatcg cccgagcggg gtcggcgcgt gcaatcgagg tgccggcgga 240 gcactcgcac attcccgagc ggcgcgtggc caggctcgtg gatcgttccg agaagacgat 300 gaagccagcg gcggttggtc ggaggggcgg agaggcgtcc tcgcccagcg cggggtcggc 360 ccctgtggga gtgcggactc cgtcgcccag gggaaagggc gcgagccgtg aaggtgggtc 420 tcgtgtggag ggtccggtga cctgctcgca aacgctttct cgccgtaagc aatctcgtgc 480 gcccgtgacg ctggggtcgt tcgtcccctt gtcccaaccg gttgcgcccc cgcccgcgcg 540 tgcccatcgc tcgtctcgtg ttaccgcgtc gcggtcgtat ttggcggccc tgtcaggttc 600 agaggtggac gatgaggagg aggtcgcgga cccgtcggac gcggcgagct cgtcggcgga 660 atcggccact tccgattcgg cgtcggagtg tcgggtggtg gtcggtgctc aggtgtcggc 720 ggaggcggcg gttgcggctg cggcggccag ggaggcggcg gaccgcgtcg ccaaggaagg 780 tcccggggcc gcggctctgg accatcaaaa agggcgatta cctgttcgac tcaggtgagc 840 gggtttgagc ggccgtcccc cgcggtcgtg gctgtcgggg atattgttgc cggttggtcg 900 gttaacgacc gagaacagtt gctcgcggag ttgctgggtg ggcgccggtc gcagggtacc 960 cgtgaccccg atctgccggc tacgttgaag ctagtccgtg acatgagcgg aggggacgcc 1020 gattctgacc ccgaatgggc gaagtccgtc gcgttagccc gatccttaga tgaagccgag 1080 cgcgctcttg aagcgcatcg ccttgcggtg gtggacggcc gtcctccccc gcgtacgggc 1140 cgctcgaact ccaaatcccg ttcccgtcgt gcgccggttt cgcgtgcgtt cgcgatcccc 1200 actcacaatc gcttcgctgt cctttcggcg cctgatttgc gacaggttgc ggaaggtgcg 1260 gaggcgccag ccgaaccctc tcctgtgtcg acgaagccgg cacaccctgt ccgacaggtt 1320 gggcggagcg ccgccccggc ggccggggcc cgaggagcga aggtcgaaac gcccgccgtg 1380 ggcgcggttt cggtgcgctc cctggaggtt gatacgggcg ccgttgggtc gtcccgggcg 1440 ccgacgggcg tgcgggacgc gcgggcggcc tcgcccgtgg ttccgcgatc gaccccgccg 1500 acgatcgagg agcacgacgc gcagaaagtc gccttcgcca cacgaaaggc ggtgcaagtg 1560 gccgtagcgg ctcaggtcgc cgacctcggg gcacggcacc gagaggcggc gagccggtgg 1620 gagcgcctca ccgctgagga ccgcgtggac cacgaccgcg ctcgccagga ggcgcggaaa 1680 gtggcctctt ctgtgcaaac gcagcgggaa tccgtggagg aaatgtgggt agaactccac 1740 gaggcgcagc aagtgcgggc ggccatcgag gcgaaaatcg ccgacgcccg gtcggcgctg 1800 ggcattatgg aagcccggta ccgcgcgcga acggacgata agagtgctgt tcgtggggcc 1860 cgagagaagg atattaagct ggcgaaaatc gaggccgacg cgctggctga ggagctcagc 1920 gcggcttccg agcagcagcg ccgcatgcgg ggcgctcaca ccgagcgcct ggccgcggag 1980 gaatccgcgg cgagggcaaa aggggcgtct gtcctcccgg ccccgccatg tcgcactggg 2040 gacgaggtcc gggacggcct cgagaggcgc gagcgccggc ggctcgcgga cgccgccctg 2100 ctggaagagg cgggcgccat tccggacggc ccgggtgata cgagttcggc gttggaggtg 2160 tctgcgcctc ctgtgtcggg gagcgcggcc gcaccggccc gtgaggagac cggcgactcg 2220 gtgtctctcg ccagggaagt ggccacggtc atggcacagg ggtccggttt cacgttcgac 2280 caagccatga agttggcgct cgcgacgaaa aagcgcaagg actgcccgcc gtccagcggg 2340 tcggaggacg gtgagtaccg ccgcggaggt gggggtcgcc gcggcagtca cggtggacgg 2400 gccggtcatg gcgatcgcgg tggaggtgcc cgcggacgct ccggccggaa gcgttaccgg 2460 ggtgcggact ccagtgacgg gtggtctgcg acggattctg gcggcgagta ccgcggtggt 2520 gggcgcggac agcgctatgg ccgtggtggc ggacgatacc gctcgggcaa ggagcggact 2580 gttcaccagc attccggtgg gagcggagac tcggacgggc atggccgcgg gtttggcggc 2640 cgcacgcgag gctcccgagg acgtggaggc cgtggtggcg gacgtggcag gtatgaaacc 2700 gatagtggta gcggtagcga agacgaggag gctcgtttcg tcgggaaaca cggtcaggta 2760 tcccttgacg ccgtgccggt tttgcgtacc cctgttgcag tgcccccggt gtgtgtcgat 2820 tccgcaacgg ctgttgcgcc tgctacgcct gtagacgagg ttggcctaga ttcgtttacc 2880 tacgtgaagc ccgagacatc caaactgcgt gccgttgccc gcggttaaat ctgacgtgac 2940 atctggtgtg cgatcggacg ttaaacctga agcggttaag tccgagccag tgaaaaccga 3000 agccctccgg cctaaggagg aattgccccc ggggacggga cggacagagg ggtccttgcc 3060 ggttgcactt tctccgacgc gtgacgtaga tgcggagcgc aaaattcagg gtcgtttcgc 3120 agtaatggcg atcaaaaact taatcgttat gccgctcttg ccgctgcaga acgataatga 3180 tgtggtcgaa cttgtccaac tatcgacggc catcacgaag tcggtcgatc agattcgtgt 3240 gagcgcgcaa gacttttccc aggatcattg ggtccgaggg tgggaaaatg tactcgaacg 3300 tcatagtagc aaattggtcg ttgttcatac ctatagaaga cttgacagat ttgtagttga 3360 ctgtcaagtt tcgttgatga aataaaaaga atattggcac aaggcgaact cttggagata 3420 cctgatggac agaaattgtt ggtcaagaag ttaaccgcaa tgcccgctga acgtcctaac 3480 aggaatcctg gggagtacga acgaatattg ggagaagagc ctgttcgtac caacgtgccg 3540 atgcttttgc gaccttgggt gatggactgc gctcacaagg aagcgataca cctaggtgag 3600 aaggttactc tcggaatcct taaacgatat tattggtgga tagggcagag tcaaagtgta 3660 aagtggtggt gccgagcttg ttacgcatgt caagcgagga agactcctag gcatactaga 3720 agatggcccc tagtatcttt acctttgccg agtaggcccg gtgagatggt ggcctttgat 3780 ttcttcggac ctttaccaca aaccaagaaa gggagacagt atgtgtttct ggtggttgat 3840 ctgtttagca gatatgctga agcatatgca ttaaccgctg cagaaaagac agctcaggga 3900 tgttccgcaa tactggtgca acagtatatc cctagatggg gttgtccgca cacctttctg 3960 tctgacagag gggcagagtt taccgcacct gtgagcaggg agatatatcg gatgcaggaa 4020 acggtgaaaa tgtttactag ctcatatcac ccacagacga atggcatggt ggaacgtctg 4080 aatcataccc tatgtcaaat gttgtctcat ttaattgcgg atgaccagaa gaattgggat 4140 gaatatttga gtactgcaat tgcagcacac aataacaaca tgagcagggg aaccggatta 4200 tctcccaatg agatccacat aggtcgatat accagattac cgatgacgat cttggaaggt 4260 cgtggggtga agggtcacca gagctttaaa caagatcagc tcgactatct tgaattaatg 4320 agggctagac aagttaaagc ctatgatctg gttaaagaag gagaccggtt gatcaaagct 4380 aaacacgcta aggctaacga agctttggtg aaggagctca aaaccagacg ccctaaaatt 4440 gaggcgaatg attgggtgtg gttgtacaat gatcaaagca ctataactgg aggagggaaa 4500 catgtgctga agcctcaaac aatcaagtct ggagagagaa aatcctttgc tttggtgtcc 4560 aagttggcat actgttggac tggacctacc gggtgctatt tgttggacct ggaaccgcgc 4620 ctgatggccg agaagtgggg cctaaactgg tgctcttaga tgtacgaaag gatgaaccgg 4680 gaaaagacat aacatctcgg gtatctgtat tgagggtgaa gaaatgtttt aacctccatt 4740 cggaggatga caaaccaagg tttttaccgt gggctatgag taattatgtt ctgaacaaat 4800 actctgagtt atcaccgcct tcccatctta cgggagaaga cgtgcagata aacttggaca 4860 cgcaccgtaa tgtgccatgg aaaatatcca agcataggct ggtgcgagga ttgtcaggaa 4920 agattgcggt tcaatattac acacattgat tgggacgaaa ccgaactgtg cacttgggag 4980 cacgaggagg aattgaaaca gtacggtaat tccgttatga ggtattggac gggaaaaatc 5040 gagttggtcg gtggtgaaaa cgcgaagtac cgaagatacc gtgtccaatg tgcaaagaga 5100 gccgaggcca ggcttaatgg tggaagacat gtgcctgatg ggtttaaggt gtgctgtgat 5160 atgcgtgagc ggcccaccct atatggcact gatattatcg ggtcttacat ttatttcaaa 5220 acccgcgatt ttggatggca gatcgcgaag gtaatcatgg tggcggagga tggggagagc 5280 gtggagaacc cacacaccgt gaagttcttg gatcttgcgc ggcaagagaa tgtacacctg 5340 agtttggaga ctctgaagac attcgatgaa gaaccgggga cttggtgctg gcatgttcac 5400 accaggttaa gggggcgaga cagcgttaag agtttccggt acaccctgga ctgaagacgg 5460 aagaagatcg tcgacaagaa agagcactca agactaagaa gatcatcgac caggacactc 5520 aagactgaag aagatcatcg acgagaactg aagatggagg ttccgaatgg ttgttaaggg 5580 ttctgagatt tataccctga cgattgtttt agttcaagag ggcctaggta tttgtttata 5640 tgtatgttga tgttatgttg ttatgtgtgt gtgtgggtga tgtgcagtgg ttgtgcgtct 5700 gatgatgtat gttggaagcc tgtgtgttgg atgttgtggt gtgtctgacg agttttatgt 5760 tgaaattcgc tgatgaatca tggagaatgc gtacattaat cgatgcgcaa gaagaatgga 5820 atgagagact tggcgatatt tgtgttttat ttgttttgga agaaaatttg aatattttag 5880 gatatacttt aggtgtgaag tggttgaaaa catctaccat ctcacttgac tttgagttgt 5940 tcataagcga aatcatctag tagatttact tatgatcagg gtgggctga 5989 // ID PGCOPIAX1 repbase; DNA; PLN; 2621 BP. XX AC AF229252; XX DT 30-MAY-2000 (Rel. 5.04, Created) DT 30-MAY-2000 (Rel. 5.04, Last updated, Version 1) XX DE PGCOPIAX1 is a copia-like LTR retrotransposon, a portion which DE encodes pol. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; PGCOPIAX1; pol. XX OS Picea glauca OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Picea. XX RN [1] RP 1-2621 RA L'Homme Y., Seguin A. and Tremblay M.F.; RT "Picea glauca copia-like retrotransposon genomic fragment."; RL Unpublished. XX RN [2] RP 1-2621 RA L'Homme Y., Seguin A. and Tremblay M.F.; RT "PGCOPIAX1."; RL Direct Submission to Genbank (28-JAN-2000)Tree Biotechnology, RL NRCan, 1055 du PEPS, Sainte-Foy, Que G1V 4C7, Canada. XX DR GenBank; AF229252; Positions 1 2621. XX SQ Sequence 2621 BP; 846 A; 429 C; 624 G; 722 T; 0 other; ggtaccaaca ggggttacaa gggtggccaa caaacgtgcg cttaagaacc acttgtattt 60 cctgcgtgta tgaatccctc aaccacgggt ttatgcgcgt aacgatagat ctctgtggct 120 taaagatgtc ggaatacgtc tctaccctga aaaaaaatac ccacaatttc tgccaaggaa 180 agtgctctga taccacttgc aagataccag atatataaaa tatgcagaac agaacgaaat 240 gctagaaata acagaataat agtaaaatat ccagcataat cttcacaata cacagaaatg 300 atatacgaaa tagcaacaga aataacactt gaacagaaat agcacttgat tcagatagca 360 atgttcacag gcctcttcga gggggcagcc tccaatcgag cagcgctctg ttacaataat 420 atccaagcta gggttcgcat accctcgact cctatttata ctaaaaagag gcatctagag 480 gaagatcctt ctagaagcgg aagcttctat taggtcttct tacatctgcc ttattctatt 540 ttattgaaag gtcttattaa tattgacctt tattacatct gaatacattg atctacctat 600 gtgcgggtta ggaccttacc ataaaagatg tgtccaaaca tgaattccca ccaatgaaag 660 acgaacttga gaaaatagag cttgagttgg atgatgcaaa atctaaatca tatgaagaag 720 aggaagcaga ggaagtagca gtagaagaag aagagactca taccctagta ttgatgagat 780 cagtgagaga tagaaggcaa ccagaaaggt atagtccacc tggtttccat tccaattttt 840 ctttatctat tactgatgat gatcccataa ctgtcaggga agcagtgaat tcagaggata 900 gtaaactttg gaagaagccc atggttgaag aaatggattc cttggataag aatgagtcat 960 gggatatagt tgagcttcta gctagaagaa aatcagttgg tagaaaatgg ttgttcaaga 1020 agaagtttaa cgtagaaggt aaagtggaga aatacaaagc tcggttagta gaaaaaggtt 1080 attcccaggt agagggaatt gaatttggtg agattttttc tcctgttgct aagttaactt 1140 ctattagatt tcttttatct attgttgttg cttttgatct tgaagtggaa caaatggatg 1200 tgaagacaac attcctacat ggggatctgg aagaagaaat ctacatgaag cagccagaag 1260 gctttgtagt gaagggaaat aaagaactag tctgtaagat aaataagtca ctatgcggtg 1320 tgaagcaatc acctaggatg tggtaccaaa agtttgacac atacatcctt agattgggat 1380 ttgtaataag cagggctgat cactgtgtat attccaagca ggttggtaat cacttcattt 1440 atgtagtgtt gtatgttgat gacatgttgt tggtaggaaa taacatggat gttatcaagg 1500 aggtgaaatc acaactatcc tccaaatttg acatgaagga tctcggtgct gctaacttca 1560 ttctgggaat ggatattaaa agagatcgcg caaacaggaa actctggttg aatcaaagaa 1620 aatatgttga aacgatattg cagaggttta atattcatgg aagtaaaccg gtcaaggttc 1680 ctattcctat aggtgtaaat ttatctgcag atcagtgtcc caagatacag gaagaagaag 1740 aggacatgtc ccatgttcca tatgctagtg cagttggcag tttgatgtat gcaatggttt 1800 gtactagacc agacattgca catgcagtgg gatttttgag caggtatatg tcaaaactag 1860 gtaaggagca ttggacaaca gtaaagaggg tcttcaggta tcttcatggc accaccagtt 1920 atggattgtg ctaccaagga agatcgggat tggatagagt ggtggacata catggctttg 1980 ttgatgcaga ctgggttgga gatttggatc acataagatc tacaagtggg tatgtgttta 2040 acctatttgg aggagcaatc agttggatga gcaaaataca ggctctagtg gcactctcaa 2100 ctacagaagc tgaatacatg gtagccactc atgcaagcca aggaagcata tggttacaaa 2160 gattgtgttc aggtattggg ttggtacaac aagtagtgag attagactgt gaaattcaga 2220 gtgcaatatt catggcgaag aacccagctt atgattcgaa gacaaatcat attgatgttt 2280 agtatcactt tgtgagagac atggttgagg aaaagaaggt gttgctggaa aaggttgaca 2340 ctttgaagaa tgttgcagat tcattgacaa agtctgtgag cacagaaaag ttttcctggt 2400 gtagagtaac aatgggcatt gttgccctga attgttgact atataatccc ctggacccct 2460 ggatgcaaag aaaacaacaa gtgggagaat gttgggtatg tgttatattc tttgcatgtg 2520 tgtgtgtgtg ggtgcgtcag atacgacaac tgcgtctgac aatcccttca cctagagttc 2580 tactgtgtgc accaggtgct ttcctagggg ggtcccaggg g 2621 // ID Gypsy-61_PIT-I repbase; DNA; PLN; 5220 BP. XX AC AATU01005792; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_PIT_; KW Gypsy-61_PIT-LTR; Gypsy-61_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5220 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005792; Positions 95959 101178. XX CC Positions [4033-4518] - Integrase core CC 'AACCA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 2989..4959 FT /product="Gypsy-61_PIT-I_1p" FT /translation="MRMSIPAFNKLVNPLVVFMEKVYAAAGGRKKSMVRRV FT VLKDVGWSNEEIAGLQHCKDALENALTLAHPDPEKRLCVFADASDLHWGAA FT ITQVPVDHLNQDFADQNHEPLMMLSGTFSGGAKRWAIVEKEAFAIVETCKR FT ADYLVRRPDGFNLYTDHRNLRYIFAPTTVLAAVPKYTADKLHRWSLLLMSL FT DYEIHDISGEANVWADLLSRWGSSFATVAAIRLTSLPTSPQVDESFVWPTL FT GHIQTAQENAVHNMPTELVKGADNILRDLSGRIWVPDVSTDLQLRLCIIGH FT FGAAGHRTTDVTLKHIAEKFFWSDLVADVKVFVSKCLHCASISGGPPFPRP FT LGEALHAEKPNEVLHFDFLSLGESTNGHNYVLVLKDDAANYVWLVPALSAT FT ANTTYDALLDWFVAFGICHTWVSDQGTHFKNLIIQALQRALGAHHHFTTAR FT CPWANGTVEVVMREVLRCCRALLSEWRLAEAEWPRVIKIVQPVLNQPPSSS FT LNGVAPVTVMTGLPAMNPVEPIVTPIGVEPATIEDIKAIRGVNFEKLKEAL FT EKMHKKVVEARSLARKNGRKKAAKRGSEMAQFAIGDFVLYADVWAHRRSKL FT RVKWCGPARVVDTSSNWIFVVENLLTGERREAHASRLKFFADAELGNYRRF FT TRPSSSQQ" XX SQ Sequence 5220 BP; 1362 A; 1191 C; 1434 G; 1233 T; 0 other; aagaattcat tagctccttt cggagagtta tggagcaaga cctgggcgat gaagcgatgg 60 tcaacccatc tgacctcgct gagatgtcaa ttctgagtgg ggaagacatc agggtgacgc 120 aggaaacgac gacgacaatg gccgtccaga gaagcgtcgc cgaccagcac gacacaagac 180 gccagattga tcaactggcg cattgttcgg cagccgccca ttagagcaaa ttagccaagt 240 acagcagcat caggacgtaa tcgcgtccaa gacggccgaa tacttgcaac agcaacatga 300 cagacagctg gagttgcagg agcagcaaga acagtttcgc cgtcaaatgg ctgagcagag 360 aaagcaaatc gaggaacagc tacgactcct taaggctgca gaggcagctg ttggagagca 420 aggacagcgg ctacagagtc tagccgaagc agttcgtccg cacgtggaag ctcggtgggg 480 gcttttcgct cagaccccaa tggctgtgtc cggcggaagg aatgatgaag accggaactg 540 tccggacagg accccgacag tgacgttagc aactggtgca aatatgccag tgccacccct 600 gtatagggga agttcaaaga aagagaaacg agatttcatg gatagctaca tggtatataa 660 acgacggatc gatgctttga accaagggac gcaaacttag gttttcgtca tgccaatcgg 720 agcttgcata gaacagagca cgttagtgag aatttgccgc ttcgaactgt tcaagcagga 780 aacccaagtc acggaagatg actggaaaaa ctactttcta gacgctcgaa atccggatta 840 cacagcgtac cagcggctgg acatcgagat gcgcaagtta gctatggatg tgaacttgct 900 ggacgcagag tcgagaatgt ctcgtttact cgccgatttt tacaaggctg tggatggggt 960 caacatggag agcattatcc atgaagatcc taagcgagtc gtggggtatc ttgtcgatgc 1020 attgcgccct ggagtttttc gttcagctat caaggataat ctcgatcgcc ctgctgggaa 1080 acatgtaaaa aaggacgtgt cagaatttct gcgctggtta aagcctcaag ttgaggagtt 1140 catgaagttc gaaactcaca tcccgagtaa tcgattagac aacagcagct ctagccaaca 1200 gcagcagcgg ggtaaacctt cccgtaaatg gactggaaag caagagaacg catttagtga 1260 cggtacgaac aaaagtgcgg caacctcgtc gcaagccgaa actgctgcca gcaagagccg 1320 agctgattaa ggtgatcgca agaacaaagg gaccagtagt ggcgtgtctc gccacgtgcg 1380 ctcctgcttt aaatgcagcg attttactca ctcggtattc cagtgtccgc aggtcactga 1440 ttttgccgag gcaaagcagc tatatgaggc gaaaacaggc aagaaagctc ggccagagaa 1500 gatcgtgggt atcgcgcggc tgcaggattc cactcactca tcgctaagta ggacgctgac 1560 atgtcgagtg atggacagtg ttgatacgat gatcaagcct gatagcggcg ctgaagttag 1620 catgatagcg ccgtgccttg tggaaaaact caaagcaaat caagtgtggt tgccacgaag 1680 gaacttgagc cgtccacagg ttgtaaaggg ggttggtcct acacctatca caattacaga 1740 agaaacgaat ttgtttttgc ggttcgagac gcctggcggt ccgctggttt tgaggaatgt 1800 gagctgtttg atctccccgg acccgttgcc agatcgtgtt ggagatatct tactgtctga 1860 ttcggtaatg gaacgtttgg gctacgatcc gctaaaactg attgagtctg cccggagggt 1920 ccagcctgaa tacgatctca gcgatttggg tgcgaccgac ggtgacgcag atgtattcgc 1980 tttcggaata caaaaggcgg atttaacgcc tgaagaaaaa gggctgagtg aagccgagga 2040 tgctgagtgt tttcctgtgc cacatgcggc gaattcagac gctgaaaagg tcaaggcagc 2100 gctaagagag ggcatggagg atgctaaatc taagggcgcg tctcctgagt ttctggagga 2160 ggtgtagaag ctgttagagg atcatatcga cgtgtttcgt atggcactgg gtggtgatcc 2220 acctgtcgat atgccaccaa tgcgtatcaa gctcaagccc ggagcgacgc cagtacgatg 2280 tcgctcacga cgatattcag cagctcaccg tgagtttctc gctcgccacg tgaaaatgct 2340 gatcgatgcc ggcctttgtt acaggaatcc atccagtgaa tggtgttcac caccccatgt 2400 agtgccaaaa gacgacgatc accggatgac agtcgacgtt cgggaagcga acaagcgtgt 2460 tgtaccagta gtttggccga tgcccatact ggaagtcgaa tttgatcgac taaagggctg 2520 caagttttat ttttccgtgg atttttttaa aggtttctgg cagtttggtg ttgcgagcga 2580 ttgccgggaa atttactcga ttctcacgga aatgggagtg ataactccta ctcgtgtcct 2640 catgggggga acgaacagtg tggcgtacgt acagtccacg gtgcaagcca tgttcgggga 2700 tctatttaat aatggccttc ttatctggat tgacgacctt ctcggttacg cagattcgcc 2760 ggacaaactg ttggagatat tgcggaaagt gcttactatt tgtgctaaaa aaggtctgaa 2820 gctaaatccc aagaaatgca agtttttcat gactgaggcg ctctggtgcg gccgtgtggt 2880 ctcaagcgat ggtgtccggc atgacccagc acgaatcctg gcttgcgtaa tctacctgcg 2940 ccgacaacgg gccaagaatt gcaacagttt atttgcgcgc tcaattggat gcgcatgtca 3000 atcccagcct ttaacaaact ggtcaaccca ctggtagtgt tcatggaaaa agtgtacgct 3060 gccgctggtg gtcggaaaaa gtcgatggtg cgacgagtgg tgttaaagga tgtgggctgg 3120 tctaacgaag aaattgctgg attacaacac tgcaaagatg cgctcgaaaa tgcgctgaca 3180 ttagcgcatc cagatcctga aaaacgtttg tgtgtttttg cggatgccag tgatttacat 3240 tggggcgcag cgatcacgca agtcccagtg gatcatctca atcaagattt cgcggatcaa 3300 aaccatgagc cactcatgat gctaagcggg actttttccg gtggggctaa gcgctgggcg 3360 attgttgaaa aagaggcttt tgctatcgtg gaaacctgca aacgagcgga ttatctcgtt 3420 cgtcgtccgg atgggtttaa tttgtataca gaccacagga atttgcgcta catatttgcg 3480 cctaccacag tgctcgctgc ggttccgaag tatacggcag ataaacttca ccggtggtct 3540 ctgttgttaa tgtcgctgga ctatgaaata cacgacatat caggggaagc caatgtttgg 3600 gcggatcttc tgtcccgttg gggatcatct ttcgctacgg tggcagcaat tcggctgaca 3660 tctctcccta cttcacctca agtggatgaa tcgttcgtgt ggcctacctt aggtcatatc 3720 cagacagcac aggagaatgc ggttcataac atgccgacag aactagtgaa aggggcggac 3780 aatatcttac gtgatctctc cgggcgaatt tgggtgccgg acgtatcaac ggatttgcag 3840 ctacgtctgt gtatcatcgg tcactttgga gccgcaggac atcgtaccac cgatgttact 3900 ttaaaacaca tcgcggaaaa gtttttttgg tcggacctcg tggccgacgt gaaagttttt 3960 gtgtccaagt gcctgcattg cgcaagtata tcggggggac caccatttcc ccggccgctc 4020 ggcgaggccc ttcacgcaga aaaaccgaat gaagttctcc attttgattt cctatctctt 4080 ggtgagtcca cgaatggaca caattacgtt cttgtattga aagatgatgc agccaattat 4140 gtatggctag ttcctgcact ttcagcgacc gccaatacta cttacgacgc attactggat 4200 tggtttgtag ctttcggaat ttgtcatact tgggtatctg atcaaggaac acatttcaag 4260 aatctgatca tccaagcctt gcaacgagct ctcggagccc accaccactt caccacagcc 4320 aggtgcccct gggccaatgg tacagtcgag gtggtgatgc gagaggtgct ccgttgttgt 4380 cgtgcattgc tttccgaatg gcgactagct gaagcagagt ggccaagggt gataaagatt 4440 gtccagccgg tgcttaacca acctccttcc tcatcattga atggggtagc gcctgtcacg 4500 gtcatgacgg gtctcccagc aatgaaccct gtggagccga tcgtcacccc aattggagtt 4560 gagccggcga caatagaaga cattaaagca attcgtggtg tcaacttcga gaagttgaag 4620 gaggctttgg aaaaaatgca caagaaagtg gtagaagctc gtagcctcgc acgcaaaaat 4680 ggtcggaaaa aggcagcaaa gcgtggttcg gaaatggcgc agttcgctat tggggatttc 4740 gttctttatg cagacgtctg ggctcaccgt cgatctaaac tacgggtcaa atggtgcggt 4800 ccagcacgtg tggttgatac ttcttccaat tggatatttg ttgtcgaaaa cttgctgacc 4860 ggagagcgtc gcgaagcaca cgccagtcgt ctcaagtttt ttgctgacgc tgaacttggg 4920 aattaccgaa gatttactcg cccaagtagc tcacaacagt gaaggccatg tggtggagga 4980 actcaaagaa gcgcgttaca atagcacggc gaagacgcat gagctgcttg tcaaatggag 5040 aggtctcaca gaagaggata attcctggga accagtccag aacctgatcg aagatgttcc 5100 agtattggtt aagaaatttc ttaccagcaa ccaagacatt ccggcgatag tgaagctcat 5160 ggaagacatc aactggtcta caatgtagac tttgcatttc agcttcatcg aagggggaag 5220 // ID DNA-TA-1N_PPa repbase; DNA; PLN; 368 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous DNA transposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW DNA-TA-1N_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-368 RA Bao W. and Jurka J.; RT "Non-autonomous DNA transposons from moss."; RL Repbase Reports 10(7), 1018-1018 (2010). XX DR [1] (Consensus) XX CC Tir is 18-bp long, TSDs are mostly TA. XX SQ Sequence 368 BP; 106 A; 67 C; 81 G; 114 T; 0 other; gggggtttca aacatggcct ttttgggtga tatttcaccc atgatgcaag ctcaaagtat 60 cccgtgatat tttaaaatat cacttgatac ttcaccaaat cacccacctc gcaaggtggg 120 tgattttgaa atcgaaatat caaaagaggg gtgggtcaaa tatcaaaaac tgcgttgctt 180 gcctcagctc tcttccctct ttgactccat accaaggggg taataaagtt tgaatcaggg 240 ggtaatatca aggggtaata aagtttgaat ggtgatattt tggatttgat attttgagtg 300 atcctggaaa tatcaggtgc tgaatcccaa ttatttggtt ttgcaaaagt gccatgtttg 360 aaaccccc 368 // ID Sola1-1_PPa repbase; DNA; PLN; 15632 BP. XX AC . XX DT 11-FEB-2011 (Rel. 16.02, Created) DT 11-FEB-2011 (Rel. 16.02, Last updated, Version 1) XX DE Sola1-type transposon - consensus. XX KW Sola; DNA transposon; Transposable Element; Sola1-1_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-15632 RA Bao W. and Jurka J.; RT "Sola1 DNA transposon from moss."; RL Direct Submission to Repbase Update (11-FEB-2011). XX DR [1] (Consensus) XX CC Tpase, Sola1-1_PPa-1p, is encoded by region 12321-15194; The CC function of Sola1-1_PPa-2p is unknown, probably was captured by CC the transposon. XX FH Key Location/Qualifiers FT CDS 12321..15194 FT /product="Sola1-1_PPa_1p" FT /translation="MKWLFLSRGLVNASEYKVYMAHSSGDDFEDAESISPA FT VPECEGLPRRLWITKCVTLYNAHGKLVGEGTCHSVNSDLVLGANGPLGDTQ FT VAVHICKTHSQDDIPQDLVYALVAWPTKLVHCHGASLHDHEAKDNFNQLHA FT ARANSALSKSKRPYMNGIRNPSQESPLKYKKLLSEESINLVSSKVCCMRNC FT VQPFPREKIKSFRERMYNGSTFQFRAHMKLDVHRAVHRDASGRKMVTVEGI FT TVCLRAWMHISGVSEATFYRYQAYVKANREARDHGNTGLPKPRKHTEQATA FT TLKCILEKEADHMPHRTRSTKSGEKMVSMILPATFQWKDQIPKINEVNTAF FT GLREVSSSNLSKIRASRFPEFDVKRPGDNFARCGTCDKYKELRKGAIGGSE FT QAMKWTRKLEKHLGIARAHREYYYAKRYYSQTYPDECVTIMHDKMDHAKTA FT SPVFSHKNKELDALVKLPVSVTGMIAHGHGDVRYAHYGLDIFPHDSNYTIG FT SMTKLLRDLEEPPKSSSRELFLGSGSTALFRSILKGAEMCKTSLDPQPERL FT VGATPLPPILNVQMDNATGENKNRYVFAFWSLLVAKRIFREVYVNFMIVGH FT THDDIDALFGRWSMLLKKENFPTIPALMKSFMDVESIPTIPHLIEEVPDFK FT NFILGSILDKSEVLVGHTKPQQVKFYLDATGCPKMKYKLFCTDVEWLGEEG FT AGIKIWKEDAQGCSLWPRGEPSPVPQRTMRGVEDIEKGISGFVKYWEDLCN FT VDVTGEYRRRYEHLVVYWRNVKDALHEPIIPCNVLREGFWPITRVRENLAD FT QLSDDGEDHEEFGEDDPYVGPLRGRPQPSFRVGRDVREGYFVAIRPAEGEI FT QPVWIARALSNPDCNPEKPNCILIQYFHPTLRSVDVQQFYTGWDSERGLHW FT KIEENEPPVWEETNALMTAWSPRIRKDTSECVIKIPAPQIEIIKQSLASYI FT KNV" FT CDS join(7159..5636,5448..3958,3739..2591,2043..1243) FT /product="Sola1-1_PPa_2p" FT /translation="MGHNLTCLLLRLLQMEDIKASLSMYLDKLDRRADDDD FT ETDPRLIYGTSWKFFDPEELEAWSLAMIPFTHDIQFLFKFKKSQAFLKLTT FT AERVKDVEYLDGDMILVKCVTTGVLIDPTDEYHFTVLIPSKRIPFTMSPFL FT ESLEPTEYSGEVKQLEAKIDRGDYTEKDGSPAFGKRLCTKINSLLQDFSVI FT KGKLEAQKLLAAPRSVRREVRAVGGSQASVDTAAPAPSSSRGKAKPRSSSA FT GRGSTRSSPIAPSGDRRAASGSSQVSEVQHPTLADAMTDVPSSYEPQSKPD FT FKHITAVYKKFWSECEDAYIFGVNTKKGISIDKLIDAPTEFNIRSKEDKLV FT DAMVVYLMNLPDRKARQTLCVMPTNRTSKPTTWEEIKDGEFFVINGQHSVA FT ASRVITDESNVVDDDVKSDFRVWSCFIVWSSDPEILRSISAYYNRINHFQM FT IQPSWATNILGARSVWVSMGCPENPSQITAAGTTAGRRASDIQCRTKGFKV FT RESDRVDLICIMILCYDSENKYLTSSICSQAFEKAMTLRFSLIDVNKSLRI FT SRTKGAEEKLKLVNELKIITAPEPIYNLWSEVISSAAHGELYNPDTSAKFN FT EKENWKQESCMLSREYFKWLGNLSLNDLERLAKHLLNQSGEKRKFPYPKVT FT IKSISSVLESCYSTKDWVERRKRKQLVKKELDNIDPSLGLINAEGDLIHEN FT WKAFKTARNITSASINVLLERPGESYFAEAKQLKSKNKTCAQISPAAAEFF FT KVFLNHKNGFQVPYACAYYKTYDVRTNTFSKWKDNAWNNESARDIGLGIID FT LRELPGVEDDLIEQNTVPYFHQVLAALEKNRSPYFADGKRWLFISGCESHR FT LQTMDFINSHGAFKGLHIDFADYIPAKFERLGDSSVGRAPRKVILTFLQDV FT DARDRVEIRPEFLPPDTPMFTKPHGYNELEFRVYNTELRMEFYLWLVRKFC FT RPGGSIFSLWGGGKITCAAMVGTQSARVELICFSISSSGSDLLFNQLESSF FT ASQSHSFLFFISTKLSACHFMQMSSVDVFAVGGTGESDRWEEISRKALTLD FT RDDFLPSGYKVSAIYKSMATTPTRSRVGARLSDRFESSPSKKRRTTPVDDV FT LVISDEDDDKGDDHDYDPDEEKEVDEKVKIDDDDLQELDPIQPNATLPERR FT SRVIPQSAQASDNPPSGGTPGASSSGGRRRKRKDMDSVATVMESISAILAD FT SQRRHEQQIAEINARQDRDRAESMRLFEESRRMHEDTSRMMLQQQQQTNLL FT LSAFVRLNPQLPDALPAPPSQPPSLMLGNAPSRSVMSGSSSGHAEAANLPH FT SSAVNVSGEVAPTTSQQHSPTSPAINFSIGEVSRVEAASVEPHSMERPTNL FT EDDTLEIAVGSDQLAFPDPDAGFDTQVSDPPVRSEGPLEDLGRPLRSRAVD FT KWLNVVLDLNGILCVCEDWKSNRSTKQYSNSSAPHSATIGAIVGMKAVYVR FT PNCLNFLAELGKIARISVWSSMKSSNIQGVVNYLFPKEMLPGLVLGQDSCT FT TIRFRDSSGRLTTFMVPGTHKELFLKNLDTLFSGYKGIFNSENTIIVDDSP FT LKHIMNDSKNVLLPNSWSNDGNGNRDTFLLRTLLPWFQRLHLARDQGLKLF FT REHGPNRIGQKMLCDERNRTEYNKVMELVRGSSPNYN" XX SQ Sequence 15632 BP; 4396 A; 3388 C; 3470 G; 4378 T; 0 other; aacccaatat tcattatttt gagagaattc cagtgaattg agagtgttga ggaggtttaa 60 aaaccaaaag catgaagtag aggtccttct ggaacattga aaattggtgg agtacaatga 120 attcaaattg aaatgtagag aattttattt caaataatca ccaaatatac atgtcgtgag 180 tgtagaactt actaaataat ttgcaaactt agaaaacctc atctacaacc tcagaaataa 240 tcaactatca gccatgcaat gtacacttca gagttgtaat ggcttatcgc agttgtactc 300 agcgattaca ccccattgaa atttattgaa atttgtatca gtagtcaagt tgctgtgctc 360 tacaagattt gagcacaata gcattgcaca atgaattgga gtagttattt ctacaacaat 420 gtcatggctc acatttcctt ttcaaatatt gcaatgtaga aagggcttta tgtcttgttg 480 tgctgatgta gactttgctg cattacgaag tatctcatgg ttgtcatctc gaagataatc 540 cggtactttc ggcaacactt tgtcataatt agcatctcca tatacttttt tttgcatcaa 600 tcttacaata gttaataggg acatggtcgg agcctcaact tccgttgcac gcagtgtaga 660 gggcctgtcc aggtcagaca actgcacttt cttctccaaa ggactatcca ccaccccatc 720 gtcaacaggc ttcttagaga agtccatagt cgaattgaca gaaggagcag agcaaaggaa 780 gtttcctgtg ctgagaagaa cgttctggcc gtagtccatg atggaatctg cagacacttc 840 gcattgcaat cgacggacct gtttcaatcc atcaaaaatt tcagatcaat acaatttgaa 900 acgaaaaatc cgattaccta tccatacaaa cacttgtact tgtcatccac aacattctcg 960 tactatcgtg aagtactgac atggatgtaa acacataaat caagaactgg aaatacagtt 1020 gcaataagat acatggtaca tcacgaccac gttgcatgaa acactataca acactatcca 1080 tcagagaatt gcacatgacc tccaactcct atttccacat ccatgacaag taaacaaatg 1140 tccattgatc caatacattg acaaatcagc tcgactcgat ctgaatcaca gtcctctgcg 1200 gagatacgta ctcttacaat acatacgtgc atggctgtcc taattataat taggagaaga 1260 ccctcgaact agctccatga ccttgttata ttcagtgcga ttccgttcat cgcacaacat 1320 tttttgccca atcctgtttg gcccatgttc tcggaataac tttaaccctt ggtcacgagc 1380 aaggtgcagt cgttgaaacc aaggaagcaa ggtgcggagg aggaatgtgt cccggttccc 1440 gttcccatca ttagaccaag agtttggaag caagacattc tttgaatcgt tcatgatgtg 1500 cttcagagga ctgtcgtcca ctatgattgt gttttctgaa ttgaagattc ccttataacc 1560 agagaataga gtgtctaaat ttttcaagaa caactcttta tgcgttccag gaaccatgaa 1620 ggtggtcaat cgtcctgagg agtctcggaa ccgaattgtc gtacacgaat cctgccctag 1680 tacgaggcct ggcaacatct cttttggaaa aaggtaattt acaacgccct ggatgttcga 1740 acttttcata gagctccata cactaatcct ggctattttt cctagctccg ccaaaaaatt 1800 caaacaattc ggccgcacgt agacagcttt cattcccaca atggcgccaa tcgtggctga 1860 gtgcggcgcc gaagagttgc tatattgctt tgtgcttcga ttagacttcc aatcctcgca 1920 aacacagaga attccattga ggtctagaac gacgttcagc cacttgtcaa ccgccctgga 1980 cctcaatgga cgaccaaggt cttccaacgg cccctcacta cgaactggag gatcggatac 2040 ctgctaagac aaacggccca cgaaggagcc aattatgcct ttcactaact acaaatgagc 2100 gcgacgatcc cgaaatgcac catacaatta catgccatag acaaagaagc gcaccgtgga 2160 agacacacat accagaggag cctagaacac gggataatga aacacacctt ttgctttgaa 2220 gaggcgaatg attcggaccg actgtcagag atcacggtcc gcgactcagg caacgacttg 2280 gcagaaacaa cgaatgccac cgaggtggga taaaacagcg gagagggaga agcagaagga 2340 gctgacaaag ttgcaaggat ttcatcacct gtgattcaat gtagaagcaa atgagcccct 2400 caagtatttg aaactcatcg actgagtaaa aatgtacaaa attcatatca aaagtattga 2460 gctccctggt tggttccatt aggaactccg tatcaaaaac aatttgccta ttcaactata 2520 ctctagacgc actagccaat aacacaaatc acctcgagtc gagctaaaaa aaattgacag 2580 cgagtgatta tgtgtcaaaa cctgcatctg gatccggaaa ggctaattga tcactgccaa 2640 ccgctatctc tagagtatcg tcctctagat ttgtggggcg ctccatggaa tgtggttcta 2700 ctgacgctgc ctccactctg gaaacttcac cgattgaaaa attgattgcc ggagacgtcg 2760 gactgtgttg ttgagatgta gtaggagcca cttcgcccga gacattgaca gcacttgaat 2820 gcggaagatt ggcggcttcc gcatgtccac tactggatcc gctcatgaca gatcgagatg 2880 gcgcattccc aagcatcagc gacggaggct gggaaggagg ggcgggaagg gcgtctggca 2940 gttggggatt aagcctcacg aatgcagaga ggagaagatt tgtctgctgc tgctgctgca 3000 gcatcatgcg ggatgtgtct tcgtgcatcc tccgggactc ctcgaacaat ctcatgctct 3060 cggcacgatc acgatcttgt cgagcgttga tttctgcaat ctgctgctcg tgcctccgct 3120 ggctgtctgc cagaatcgcc gaaatggact ccatgacggt agccacagag tccatgtcct 3180 tcctcttcct cctccgcccc ccagaagatg acgcaccagg agttccaccg gaaggtggat 3240 tatcagatgc ttgtgctgac tgcggaataa cccgagatcg ccgctcaggt agtgtggcgt 3300 tgggctgaat gggatccaac tcttgaaggt cgtcgtcgtc gattttgacc ttctcgtcga 3360 cttccttctc ctcgtccggg tcatagtcgt ggtcgtcccc tttgtcgtcg tcttcatcag 3420 atataacgag gacgtcgtca actggtgttg tcctccgctt ctttgatgga gaagactcga 3480 agcggtcact gagccgtgct ccaactcttg accgtgtggg cgtggtggcc atagacttgt 3540 atatcgcact caccttgtat ccactgggaa ggaagtcatc tctgtcgaga gtgagtgctt 3600 tcctagagat ctcttcccac cgatccgact ctccggtccc tccgaccgca aagacatcca 3660 cggaactcat ctgcatgaaa tggcacgcgg acagcttagt ggatatgaaa aaaagaaatg 3720 aatgtgattg agaagcaaat cagatcgact cgagctgatt gagaagcaaa tcagctcgac 3780 tcgagctgat tgagaagcaa atcagctcga ctcgagctga tttagaagaa aatcagctcg 3840 actcgagctg attagaagaa atcagctcga ctggagctga ttcagaagaa aatcagcttg 3900 actccagctg attcagaagc aaatcaactc gactcgagct cattgagaag aaaatcagct 3960 cgactcaagc tgattgaaaa gcaaatcaga tccactcgag ctgattgaga agcaaatcag 4020 ctcgactcga gctgattgag tacctaccat tgccgcgcaa gtgatcttgc ctccccccca 4080 tagtgaaaaa atggaccccc ctggacggca gaacttccgc actagccaga gatagaactc 4140 cattcgtagt tcggtgttgt atactcgaaa ctccaactcg ttgtagccgt gaggcttggt 4200 aaacattggt gtgtcgggag gaagaaattc cggtcggatc tcgacacggt cacgggcgtc 4260 tacatcttgc aagaaagtga ggatcacctt ccttggcgct cgcccaactg aggaatctcc 4320 aagacgctcg aactttgcag gaatgtagtc tgcaaagtcg atgtgcaggc ctttgaaggc 4380 cccgtgcgag ttgatgaagt ccattgtctg cagtctatgg ctctcgcagc cggatatgaa 4440 gagccacctc tttccatctg cgaagtatgg acttctattc ttctccagag cagcaagaac 4500 ttgatggaaa taagggacgg tgttttgttc tataagatca tcctccaccc ccggaagctc 4560 tcggaggtcg atgattccaa gcccgatatc acgagcgctc tcgttattcc atgcgttgtc 4620 tttccactta ctgaaggtgt tcgtcctcac atcataagtc ttgtaatagg cacacgcgta 4680 tggcacctgg aacccgttct tatgattcaa gaaaactttg aagaactctg ctgcggccgg 4740 agaaatctgc gcgcaggtct tgttcttgga cttcagttgc ttcgcttcag caaagtagga 4800 ttctccaggc cgctcaagga ggacgtttat tgacgcactc gtgatattac gagccgtctt 4860 gaacgccttc caattctcat gaatgaggtc gccctccgcg ttgattaatc ccaagcttgg 4920 gtctatgttg tcgagctcct tcttcactag ctgcttcctc ttcctcctct ccacccagtc 4980 cttcgtgcta tagcagctct caagcacaga cgagattgat ttaatcgtca cctttggata 5040 ggggaacttt cgcttctccc cagattggtt aagaaggtgt ttcgcgagcc tctccagatc 5100 attcaggctc aggttgccga gccacttgaa gtactcgcgg ctgagcatgc aactctcctg 5160 cttccagttc tctttctcgt tgaacttcgc agaggtgtcg gggttgtaga gctccccgtg 5220 ggcagcactg gaaataacct cactccagag gttgtagatg ggctccgggg cagtgatgat 5280 ctttagctca ttgacgagct taagcttctc ctctgcaccc ttggtgcgcg aaattctcaa 5340 tgacttgttg acgtcaatca atgagaacct caaagtcatt gctttctcga atgcctgcga 5400 gcaaatagaa gaagttaaat atttattttc tgaatcatag caaagaattc aattcaaaag 5460 agggagaata gcaaatcaga tcgagtcgag ctgatatcct ctgaacaagc cttcataata 5520 tcagactatt aagtcactcg agaaatgtcg tcacatcaaa aataattcga ctgtgatgga 5580 aagtacaacc gttcagatca gatcgactcg atctgatccc aagtcaagat attcacataa 5640 tacaaatcag atcgactcga tctgattctc ttaccttgaa tcccttcgtt ctacattgaa 5700 tgtccgaagc tcttctccca gctgtcgtgc cggcggctgt gatctgggaa ggattctctg 5760 ggcatcccat actcacccaa accgatcgtg ctccgaggat gttggtcgcc catgacggct 5820 gtatcatctg aaagtgattg atccgattgt agtatgctga tatggacctc agtatctccg 5880 gatcgctcga ccatacaata aagcaactcc agacgcggaa gtcgctcttc acatcgtcat 5940 caaccacgtt actctcgtcg gttatgaccc tgctggctgc aacactgtgc tgcccgttga 6000 tgacaaaaaa ctctccgtct ttgatctcct cccacgttgt cggctttgag gttctgttcg 6060 tgggcattac gcataacgtt tgccgggcct ttcgatcggg caggttcatg agatacacca 6120 ccattgcatc aacgagcttg tcctctttcg atcgaatgtt gaactccgta ggtgcatcaa 6180 tgagtttatc tatggagatg cccttctttg tattgacccc gaagatgtat gcatcttcgc 6240 actctgacca gaacttcttg tacactgcgg tgatgtgctt gaagtcgggc ttactctggg 6300 gttcatacga cgacggaacg tcggtcatcg catcggcaag ggtcggatgt tgaacctccg 6360 acacctggga gctgcccgaa gccgctcggc gatctccaga aggcgcaatg gggctacttc 6420 tcgtcgatcc tcgccctgca gagctggacc gtggcttcgc ttttccccgg ctgcttgaag 6480 gcgcaggagc tgctgtatcg accgaagctt gacttccacc tactgctcga acttctctcc 6540 ggacagaccg cggggcagct aatagtttct gcgcctctag tttacctttg atgacggaga 6600 aatcttgcag aagtgaattt atcttggtgc agagccgctt gccaaaagct ggggacccgt 6660 ccttctcagt gtagtccccc ctgtcgattt ttgcctcgag ttgcttcacc tctccgctgt 6720 attcagtggg ctcgaggctt tcgaggaagg gagacattgt gaaggggatc cgcttcgagg 6780 gtatgagaac tgtgaagtga tattcatctg tgggatctat caaaactccg gtagttacgc 6840 acttcaccag gatcatgtcg ccgtctaagt actcgacatc ctttacccgc tctgctgtcg 6900 tgagcttcaa gaatgcttgg cttttcttga atttgaacaa aaactggatg tcgtgcgtga 6960 atggaatcat agctagactc catgcctcga gctcctctgg gtcaaaaaac ttccacgagg 7020 ttccataaat caaccgcggg tcggtctcgt catcgtcatc ggcacgccgg tcgagcttat 7080 ccaagtacat ggacaatgat gccttgatgt cctccatctg caacagacgt agaagcaaac 7140 atgtcagatt atgtcccatc gacttaatga cacagttact ccaatgaacg ttttaaactc 7200 ttcttactat atcaaatgta ttattggaca caagaacaat aatcttatat atgaaatcag 7260 atcgactcga gctgatttat ggtcctcgta ttgcgtaggg tgttctatgt aggccaatgt 7320 tagtattttg gaaaacaacg attacgaata cgaatttatg attttagtca ggttttccaa 7380 ttgtatgatt catcttaatg tgtttttaat gccgaaacat ggaaatctac tatatattct 7440 tcacgtcaaa tcagatcgac tcgatctgat tctttggtgt tatgcgtagt aattttgtaa 7500 aggattctgt accggaggaa agagtgaact cggggtacat ggagtttatg cgtcaatgat 7560 gacgctagaa ttataagttt tctacattag atttaattaa aatggtgtca ttttttatgc 7620 taatattatg gttcatttta tattcctatg tgaatgtagc aatggatatg cattcagcaa 7680 tttttaagag aagttaactt aatttgtttg gattatgact aattattctg gcctcaataa 7740 tatttcggtg cgtaaactaa atcagaatat ttgaagggga atgtagcttc atgcgattga 7800 acgaatcagc tcgaatcgag ctgatcttat tcgaagactg aattcctcct tttacgcgct 7860 cattgaaatg aagctcgtgg atcagctcga ttcgagctga tagtatgtcg aagctatcgt 7920 aagaatcagc tcgaatcgag ctgatgacat gtcggggcta tcgcaagata tagttagagt 7980 ttagctaatg gtaggtcgaa cgattgcaag attcagagtt tgtgcagctg atggctggta 8040 agggagattg catgaatcag ctcgagtcga gctgatggca ggtaagggag attgtatgaa 8100 tcagctcgag tcgagctgat tgcaggtaag ggagattgca tgaatcagct cgagttgagc 8160 tgatggcagg tcagggagat tgcatgaatc agctcgagtc gagctgatgg caggtcagag 8220 cgatcgcacg aatcagcccg agtcgagctg atcttcgtcc acgtcagagt ttctattgcc 8280 atgtgtatgg taataagaaa ctcctgaatc agctcggctc gaatggaacg acactgattt 8340 tgtagagaat tacctgtggg aactggatct gcgagatact gatgacgtaa gggcgcaact 8400 gtgattcctc acgcgatgtg cgcccggccg cggacgtcct cctgttctgc cctattcgtt 8460 atcgtacgaa tacaaaaacc gcgcaccgtg acactacaga tccaagacga caccaggcag 8520 taaaggagat caatttcaca accaataaat gaaatgcaac gtcaaacaca aatgtgattg 8580 aaaacgaaga ggaagagacc caagaattcg acaccgtaga caaatacaag tcggcactta 8640 caggaacgta ggcagcgtca cgcacagggg aatcaaaaca gctctctgtg gcgtcaaaag 8700 ctcctgccct cgtcacctgg gattgacaat gcaataaaat agctggaaca gcaaaggaga 8760 agtgaggaac agcaaacaag aagtgaggaa cagcaaagca gaggagagaa gcgagggtca 8820 cgacaacgtg acgaagcaca gagaaaatgc gctaggagcg atgtgcgcaa caaaaaagag 8880 aaagaggaga aatttgtggg cggtaatgtt gtttaacccc caccctgagc atatgcgttc 8940 acgtgccccg gccgtgttcc cttgcgcgat ttcggcggga actcgtcggg agcttcgacg 9000 tcgttttcac gggaactcat cgggaactgc tggggaacag gatgggaaat gttggagaga 9060 aacgacgttc ttttctataa aatctcagtt tcaaatcatt cctataatgt gtgtacagaa 9120 agtgtataat gaccgttttc tgacatttca caacaaaatc caaatgattg aaaacaaaac 9180 atgcctttaa ataaaaccaa ttcttcacac tagcaggtcg aactaataca atcagtggat 9240 tgcatttggt tgtatatgta aagtttttta aaaaggataa ttttaattta catgattatt 9300 ttaaatttcc caaccttttt catctactcc aatttcttaa tcaaaaaacc attcatgtca 9360 ttgcaaatac taccttttct tccatttcat tctcaaaact tgaatcaatg tgaataaaaa 9420 aatactaatt aattactcaa gtatcacatt caagacattc attcattttg aacgtctaat 9480 gaatagttta cttttagtac atgaataaaa taaggaattt tgaagttccc aaatcaaatg 9540 tgactaatgt gactaatgtg actaacccca cgacaacgga ttacttatac tactcacatt 9600 aacctacaaa cttcaaaatt ccataatata ttcatatcat gtttataaat tatcctttat 9660 tattttaaat tatcctttct ttttataaat taatctcaag tcgaggataa cttttccatc 9720 tataataaaa atttcaatta aaaatataag atcaatcaaa aaatcaatta cagatataag 9780 atcagtatta aattaagact atgaaaagac tcaatttaac gaatgttgat attattgaca 9840 tgcgcaataa tttatacaag atatgcataa tacaaggact attacttaat atgttttatt 9900 ttagtttttc ttttaccaca taatcgtata aatatagtca atgctatgca tttaagatga 9960 ttacatatcg acacataaaa tatctgaatc atatttactt ttagaggtat gcacacattt 10020 gcaatgaagg attaaacgaa caagtaattc acttgtcctt ctttcatata atcattttat 10080 cacttatcaa agaataaaat gtcatagcaa gataattgat atatgaagta gcatacaaaa 10140 ttgaacttga aatatgaacg ttttagaaat ccgcatccca catcccgatt gatgtcctgt 10200 cagcatcaat tctccacgga gtcctgccct gcagcaacat accctcgaca cccaagtatc 10260 gaaccgtgcc tggatccttg gcgttgcccc tgtctattgc gatggacggt tcagatctgc 10320 tgtggaggat cgacggtgga taacgtcgtg cccagggtag gtgggctgcg ttgactgcat 10380 tcccgcagag tcagttctgc cgatgtcaat cctgtgtttt gcattcctct ttgctcgcac 10440 actagctacg ttcttcgatt tggcggctta gtcgacctcc agtgtccaag tggtatgccc 10500 tccgaacgtc ccttcgtttg tctacttacg attgataacg cacgagcgct agaattaatt 10560 ttgctctcat tctctgtact tgcaatttcc aatttttagg tgagcttcca tgtctgaatt 10620 gaagcgggtt ccgatgttgc ccattgtgtt ggttttcttc ttatgttttg tacgtcttca 10680 tgtccagccg tttgggctgt tgcggtcatc ccccagcaag agtaatgtat ggattagtct 10740 tctctttgtg ctctcgttta ttacattttc ggcgagtgag gtcctgcaat gacctaatga 10800 tgcggagggg catttttttt caatatagta ctgttcatcc agaattcggt acaatcttgt 10860 cctgctacag taacacgtac ccatacaatt ccgcaatagt gcagatgact cgctttataa 10920 ctgtgtctct ctgataattt ataatatgtg ctatggaaat cagctcgact cgagctgatt 10980 ttctgaaagg tccaatacgt cctcgttgtt caaaactatt gtcaagaatc agttggagta 11040 gagctgattc tatgaaaggt ccactgcgtc attgttattg aatacaatca cctaaaatca 11100 gctcgagtcg agctgattct ctgagacgtc cagtaagtct tcattcaaag gtattaatgt 11160 caacaatcag ctcgagtcga gctgattctc tgagaggtgt attacgtcgt cgatattgaa 11220 aacaaacgtt cagaatcaga tcgagtcgag ctgattctat gagaggtcca gaatttttga 11280 ttggtccaat acgtccttgt tattgaaaac tgttgtctag aatcagctcg agtcgagctg 11340 attctctgag acgtcgagtg cgtcttcatt taatagtatt aaggtcaaca atcagctcga 11400 gtcgagctga ttctatgaga ggtaatttac gtcctcggta ctaaaaacaa tcgttcagaa 11460 tcagatcgag ccgagctgat tctttaagag gtccatattt tctgaaaggt cccatgcgtc 11520 cttgttatta aatttttttg tatagaatga gctcaagttg agatgattct atgaatggtc 11580 cagttcgtca tttttattgt tttcaaaaat ctaaaatcag ctcgagtcga gctgattctc 11640 tgagacgtcc attacgtctt cattcaaaag tattaatgtc aacaatcagc tcgagtcgag 11700 ctgattgtct gagaggtgta ttacgtcgtc gatactgaaa acaaacgttt agaatcagat 11760 cgagtcgagc tgattctctg agaggtccag aacatcctcg ttaaagaaaa ctaacagcta 11820 gaatcagctt cattcgagct gattcaatga caggtccagt tcgtcctcgt tattgaagac 11880 cagtatccag aatcaagtcg aatcgagctg attctgtgtg aggtccagtt cgtcctcctt 11940 taaataactg acaatctgaa tcagctcgag tcgagctgat tttctgagtg ctctattacg 12000 ccctcgtatt ggagaaccaa tgtccataat caacttcagt tgagctggtt taattagacg 12060 tcgggtacgt ccttgtgagt gaattctaac atccattatc agctcgactc gagctgatgt 12120 acgtgtcacg tattcttatc agtgcggaga tgtgcgctgc cattcggaaa ttggcattca 12180 ctgaaatgtg gttcatcgtt ttgctttgta caattttttc tcatccatac atgtccgcta 12240 atcagatcga ctcgatctga taagtatgaa tactgcctct tgtgtctgga tgttggcgta 12300 aggtttcttt catcgttttg atgaagtggt tgtttttgtc cagaggactc gtaaacgctt 12360 cggaatacaa agtgtacatg gctcattcat caggggatga ttttgaggac gctgaatcca 12420 tcagtcctgc agttcccgag tgcgaaggac ttcctcggcg tctgtggatt acgaagtgtg 12480 tgaccctcta taatgcacat ggaaaattgg taggcgaggg tacatgccat agtgttaatt 12540 ctgatcttgt gctcggcgct aatggtcctc ttggtgacac tcaggtcgca gtccacattt 12600 gcaaaactca ttcccaagat gacatccccc aagatcttgt gtacgcactt gtggcgtggc 12660 ctacaaagct agtccattgc catggtgcta gtctccacga ccacgaggct aaggataact 12720 tcaatcaatt gcacgcagct cgggcaaact cggcgctctc aaagtccaaa aggccatata 12780 tgaatggtat ccgaaatccc tctcaagagt cacctctaaa gtacaaaaaa ctcctcagcg 12840 aagagtctat caacttggtg tcaagtaaag tgtgctgtat gaggaactgc gtgcagcctt 12900 ttccaagaga gaagattaaa tcattccgcg agcgaatgta taatggatct acattccagt 12960 tcagagccca tatgaagtta gatgtgcata gggcggttca tagagatgca agcgggcgga 13020 agatggtgac agtggagggg atcaccgtgt gcttgcgtgc atggatgcat atttctgggg 13080 tatcagaagc aacattctac cgctaccaag catatgtaaa agctaatcgg gaggcgaggg 13140 accatggcaa cactggatta ccgaagccaa ggaagcacac tgaacaagcg acagctacgt 13200 tgaagtgtat cctcgagaag gaggcagatc acatgccaca tcgtactcgc agtacaaaat 13260 ctggggagaa gatggtttcg atgattctcc cagctacctt tcaatggaaa gatcaaattc 13320 caaaaatcaa cgaagttaat actgcttttg gattgaggga ggtctcttct tcaaacttga 13380 gcaagatcag agcatctagg tttccagaat tcgatgtcaa aagacccgga gataattttg 13440 cacgatgtgg tacctgcgac aagtacaaag agctaaggaa gggtgccatt ggaggatctg 13500 aacaggctat gaagtggacg aggaagttgg agaaacatct tggtattgct cgtgctcata 13560 gggagtacta ttatgctaag cgatactact cgcaaactta tcccgatgag tgcgtgacaa 13620 tcatgcatga caagatggat catgccaaaa ctgcatctcc ggtattttca cataagaaca 13680 aagaattgga tgctttggtg aagctacctg tatctgtgac aggcatgatt gctcatggac 13740 acggtgacgt gcgttatgct cattatggat tggatatctt tccccatgat tcaaattata 13800 ctattggatc gatgacaaag ttgttgcgtg atttggagga acctccaaaa tcatcttccc 13860 gagaattatt tttgggctct ggatccacag ctctatttcg tagcattctc aagggtgcgg 13920 agatgtgcaa aacatcacta gatccacaac ctgagagatt agtaggagca acaccgttgc 13980 cacccatttt gaatgtgcaa atggataatg ccacagggga gaacaaaaat agatatgttt 14040 ttgctttttg gtccctactt gtggcaaagc ggatctttcg cgaagtgtat gtaaatttca 14100 tgatagtagg acatacacat gacgacatcg acgccttatt tggaagatgg agcatgcttc 14160 tgaagaaaga gaacttccct actatccctg cacttatgaa gtcgttcatg gacgtggaat 14220 ctattcccac tatccctcat cttatcgagg aggtgccgga ttttaaaaat tttatacttg 14280 gatctatttt agacaaaagt gaagttcttg taggtcacac aaaaccacaa caagtcaaat 14340 tttacttgga tgcaacaggg tgtccaaaaa tgaaatacaa attgttttgt accgatgtag 14400 agtggctagg agaggaagga gcaggcatta aaatttggaa agaggatgca cagggatgta 14460 gtttgtggcc tcgtggtgag ccatcgcctg ttccacaacg tacaatgaga ggtgtggagg 14520 atattgagaa aggaatatca gggttcgtga aatattggga ggatttgtgc aatgttgatg 14580 tcactggaga gtatcgaaga cggtatgagc atttggtggt gtattggcgt aacgtgaagg 14640 atgcattgca tgaaccaatc attccttgta atgttctgag agaaggtttt tggccaatta 14700 cccgtgtgag agaaaatctt gcagatcaat tatcagatga tggcgaggat catgaggaat 14760 ttggagaaga tgatccatat gttggtcctc tgagaggtcg cccacaacca tcttttaggg 14820 taggtcgaga tgttcgagaa ggatattttg ttgcaattcg acctgcagaa ggtgaaatac 14880 aaccagtgtg gatagctagg gctttgtcga acccagattg taatcctgag aagccaaact 14940 gcattctcat tcagtatttt catccgacct taagaagtgt ggatgtacaa cagttctata 15000 caggttggga tagcgagaga ggtttgcatt ggaagatcga agagaatgaa cctcctgttt 15060 gggaagaaac gaatgctctt atgacagcgt ggtcaccacg aatcagaaag gacacaagtg 15120 aatgcgtgat caaaattccg gctccacaaa ttgaaataat caagcagagt cttgcatcgt 15180 atattaaaaa tgtatgaatg aaatatacaa atttgtcatt gtgatttgaa tattcatatt 15240 ttggtaacat agtttttaaa attttatagt attgtgacaa aggtagtaga actcgtagtg 15300 tataataagt ggttttagtt tgatttagtt ttatagataa ctattgtaga tattccttaa 15360 ctatagtttt atatgtacac aaaaattact tgtataaagt tatatcaaaa tatttgatta 15420 agttagagca ttgttatttt caatcacatc tgtatttgac accttgcaaa acaataaaaa 15480 ctctcatttt aaaggaaatt acttatcaca agtactgaat tgctacctca ttgaccttat 15540 ttgactatac atataatcca atttttgtta cttctatttg attgttttat tttgagagac 15600 accaaacctc tcaaaataat gaatattgtg tt 15632 // ID Gypsy-7_PR-LTR repbase; DNA; PLN; 192 BP. XX AC AAQX01000737; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-7_PR_; KW Gypsy-7_PR-I; Gypsy-7_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-192 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000737; Positions 50022 50213. XX SQ Sequence 192 BP; 59 A; 50 C; 49 G; 34 T; 0 other; tgtagtggct gcaagccatg ggatcagcaa aactcctctc tcgagctgca gctgcaacgg 60 acacggcgtc cgttgcacga tgcataggaa aaccaaccgt aaccactaca gagtagttag 120 caggcagtgc atgtaaggga acagaattca acaagccttc gagttctcaa gcaagcgtcg 180 gaagacacta ca 192 // ID Gypsy-23_PIT-I repbase; DNA; PLN; 5087 BP. XX AC AATU01001903; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_PIT_; KW Gypsy-23_PIT-LTR; Gypsy-23_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5087 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001903; Positions 107564 112650. XX CC Positions [3488-4003] - Integrase core CC 'GACAG' target site duplication CC LTRs are 94% similar to each other. XX FH Key Location/Qualifiers FT CDS 2390..4048 FT /product="Gypsy-23_PIT-I_1p" FT /translation="MLPPTPAAELQQFRCATNWMRAGLVDYARVARPLQER FT LGAALVGTRKTKRAAAGVQIDLTVEELKSFDAVRVLLAHSATLSYPDPTKH FT LVLMSDASDSGRGLVVSQVSRWKPQIPIHQQDHALLVCMRGRFTGSALYWS FT VIEKESFPIVHACDRLEYLLLRPQGLKLYCHHRNFVYLFAPGKTLKKHVRG FT KLLRWSTKLLEYRYAIEHIEGIHNVWTDLISRWGGKPLPRARIHSAKRFTR FT ANRKRGSGSKASPAPPPLRPLDQDGFVWPTVEEIGSVQSLQNAPKGATLSG FT DELWLMNDVIWIPSGAHDLTQRLLVVARCGRNGHRGMHVMETHIRRLFYIS FT GLTRIVRAFCSKCLLCLHVKEGVVIPRPFSETHYTYERNETLHWDFDSLGD FT SFGTSRYTLVLKDAATHFTEVVACDSPTSEAAASTILNWYSRFEAPRVWAI FT DSGSQFKNKVVSELGRRLKSCQAFVLAYSPWKNGSVERVNRDILQVLRALA FT LEYKVSLHDWPYLLPLVQSSLNHSPVPSLANRAPVELFTGLPCPSALDTVF FT FREGRV" XX SQ Sequence 5087 BP; 1364 A; 1205 C; 1343 G; 1175 T; 0 other; aagttaactt tagctcaagt gtaagcgatg agaactcgca gcagccgcca atctcaggtt 60 gaccaaggta ccaggttagc tgagacgact gaaacggctg ccagctcgac tactggagac 120 atcgaagttt cgacgactgc tgcgacagca ataccggtgt cgtcctcgtc aaatgtaccc 180 ccgtacgtga acgacatctg tcatcctgct cttgtcaaat ggaaaagaga aaggcaggcg 240 tatgtggacg caatcgaagc tcggtgcgct accactggcg aagacaagtc aaaagctcta 300 tggagcgtta agaactcgtt cagtcggcaa cccctgaaga ctatctgcaa gtttgagtgg 360 gggaccactg tagaacagat cacggaggac aggattgtgt cagagttgga caagatcatc 420 ggtaatgtca tgaatgatgt cattcttgat attgactcga attttgatgc aaggttgaag 480 atggaccttg atcaacgaga cgtcaaagct cgcgtcccga actatttcat ggtgtgtgat 540 gagatcattt tggagaacga actggcgagt acctttgcta cagcaacagg tattaaggaa 600 aaaagccgag tactgaagaa gcacttagca cctgtggccc tacgtgatgc agtggatagt 660 cacctacgcc ttgtgaacac ctcaagcaaa tccgacgaga acgctctgta tgtcctcgtg 720 aaagagaaag cgctggagca ggccaaggtg gacctattac cgtagacacg caggcagcaa 780 tcaaactgga aaaacagtgg aggaaagccc aagggtggta ctgatcgtgg ctcacatcag 840 aaaagtgatc aaccatcacc tggcaagaaa aaacgcaata atgacggcca accccgcact 900 gtccttgcaa tgaaggcgtc gctaactcct gtggtgtaaa gcaaaccacg cacgggatgt 960 tttcactgcg gtaacgatca ttggctcagt gaatgccccg atcttaacga agcggtgaaa 1020 gaagcaattc tcgctgataa gaagagcaag agggagacct ttagtggaaa tgagaataaa 1080 cggtctcgta cgaagcgtgt ggagataacc tcgacgacga aaacgcagga gcgacccact 1140 gtcgtattaa atggacccct tgagctacct tacagcgctg atagtgggtc ggactacaat 1200 atcatgtcac gagaacatgc tgatcgaatt tgcgagcttg atcagaatat tctccctgtg 1260 gaattgagtg agccgattga atcgcgtgca gttggaggta cgattttgac atcgacccac 1320 gctatcgatg tgatcatcac attaaatacg gccgcgggac cagtacgatg ccaagaccag 1380 aagcgatgcc tgatggtgga gtccgacgat gacgagtttc tggttggtaa aacattgtta 1440 gctgagcttg gcataaatgt ggatcgtcaa tggaatacct tgcaacacgt ggagacgatg 1500 atgtgacttt gatgacccgg aaggtatgcc gacctgtaag ccaacagagg aagatgtggt 1560 aatgaaggta gtggatactc tggtacatga cgcaactaac cgtggcgttg tggatgaata 1620 catcacgacc agactgtaca ctattttacg ccgttttgga ggccggaggt tggtaacgat 1680 ccaccagctc gagttcttcc tctaaaactc cggctaaaac ctggtgcagc tcccaaccgg 1740 tgcaaagtac gccaatacag cccggcaaaa tcagaatttc tcgatacttt taacaagaag 1800 cttgtcgaat tagggtgggt ttatgaaagc cgtgagagcc gctggtgctg cccagcctca 1860 ccggttaaaa agcccagcac tgatgactac cgacaaacag tggattatag accgacaaat 1920 gctcttaccc agcttatcgc tagtgtgatg ccgagtcttg aggtggcgtt ggaacactgt 1980 agaggaatga tgtactatgc aatgtttgac ttcctcaagg gttttggcag ctcccattac 2040 acgagagctg ccgtgaattt ctctcgtaca tgaccgaccg cggcgtgttc acgccaactc 2100 gggttccaca aggaagcacc gacgctgccc tacacttcca attgacggcg gaaatggttt 2160 aggtgatttg gggaacacga atgtcatcgt gtggatcgaa gacctcctca ttttgccaaa 2220 aacgctgata aattggttga aattattgat gccgtacttc agaggctgga cgagttttga 2280 tttctcctaa atccaaagaa gtgcactttg tttcaaactg tggtgtggct gcatcgtcaa 2340 caaggatgga atcggtcatg acccgagtcg aattcaggcc ttaagagata tgctaccgcc 2400 aacgcccgcc gccgaactgc agcaatttcg ctgcgccacc aattggatgc gcgcaggtct 2460 agttgactac gctcgtgtcg caaggccatt acaggaacgt ctcggcgcag ccttggtcgg 2520 cactagaaaa accaagagag ctgctgcagg ggtgcaaatc gacttgacag tggaggaatt 2580 gaaaagtttc gatgcagtaa gggtcttgtt ggcacattcg gcgacgttat catacccaga 2640 tccaaccaag catctagtac tgatgtctga tgcttctgat tctggccggg gtttagttgt 2700 atcgcaagtg agtcgatgga agccgcagat tccgatccac caacaggacc atgcgttgct 2760 ggtctgtatg agaggccgtt ttactggctc agctctttac tggagtgtta tcgagaagga 2820 atcattcccg atcgttcacg cgtgtgatcg actggaatac ctattgcttc gaccacaagg 2880 gctcaaacta tactgccatc atcggaactt cgtctacctt tttgctcccg gcaaaacgtt 2940 aaagaagcat gtgcgcggga agctcttacg ctggtccact aaactattag agtaccgata 3000 cgctatagag cacattgagg ggattcacaa cgtatggacg gacctgatat cgaggtgggg 3060 cggcaaaccc ctaccaagag cgcgtattca ctcggccaag aggtttacac gagccaatcg 3120 caagcgtgga agcggttcaa aggcgagtcc agcgcctcca ccgctacgcc cactagacca 3180 ggacggtttc gtctggccta cagtcgagga gattggtagc gtgcaatcac tgcaaaacgc 3240 accgaagggt gcaacgctga gtggtgatga actttggctt atgaatgacg tgatttggat 3300 accaagtgga gctcacgact tgactcaaag acttctcgtc gtcgcgcgct gtggtagaaa 3360 cggacaccgc ggcatgcatg tgatggaaac ccacatacgc cggctgtttt acatttctgg 3420 cctcacaagg attgtacgtg ccttctgctc gaaatgccta ctctgcctac atgtgaagga 3480 aggggtagtg atcccccgac cttttagtga aactcactac acctacgaac ggaacgagac 3540 gctacactgg gattttgata gtctgggtga ttcttttggc acctcccgct acacgctcgt 3600 gttgaaagat gcggcaacgc actttacgga agtggtggct tgtgatagcc ctacttctga 3660 agctgcagcg agtaccatcc taaattggta cagtcgcttt gaagcaccta gggtgtgggc 3720 aatcgactct ggatcgcaat ttaaaaacaa ggtggtatca gaacttggcc gaaggctgaa 3780 aagctgtcaa gcgtttgtgc tagcatactc accttggaag aacggctcag tagagcgcgt 3840 gaaccgggat atcctgcagg tactgagggc actggcactg gagtacaaag tcagcttaca 3900 cgactggcct tatttacttc cgctggtgca gtccagcctt aatcactccc cggtaccgtc 3960 gctggctaac cgggctccag ttgagctatt tacgggacta ccatgcccca gtgcactaga 4020 cacggtattt ttccgggaag gaagggtgta attacgctgg acaggccaaa gccaagtaca 4080 atagagcgac tcaacaaaca ttcgcaacat gcacgagccc gccaaggacg agcgagaacg 4140 ccagaacaaa cggttccggc tacgaccaca ccacgagcaa cctataaact tctctgtcgg 4200 tgattacgtc ctacgttctc gtgtcgatga gaagctacat gcagacaagc tacgtgtgat 4260 gtgggtcggt ccgtaccgtg tggttggcag tgttggctac tatttcactg tgaaacattt 4320 ggtcaatgga aaaagaatgg acgttcatcc atctcgccta aaactgtatg cggacgactc 4380 gctcaatgtg actgaggagc ttctcgatca tattgcctct caagggacac tgctggctgt 4440 agaggcgatc gtagatcatc gacggaacac agacatgcag gcctatgagg tgaaggtaaa 4500 gtggcttggc ctcgagccta tcgagtactc ctgggagcct ttgaagacca tatatgaaga 4560 tgtgccacag cttgtgctac agtgcgccac tgatactggt gatgccacct ttctatgcgc 4620 tacaacaaca gctaccgatc gctagtcacg ccaacgtcca actctgtcta cggccgaagt 4680 tatggacact tcctgttaaa tgtgataatc gacttgaaag ggacttacac ctaagagcgg 4740 gtttcgatta tataggggac tgatacttac agaaccaatg gcgacgacgc caaggaacat 4800 gctggcaaag tttggtgtca cagggcgaag gattgccaat accatctgga ttcaagcatt 4860 tcagcttctg tgattggagg attttccttt gaagcgacat tcattggatg aaattggatc 4920 gttgcaaatc ttcggaaacg gaacctgtaa ctctgcaaca tgttgaagtt gatgcaccgg 4980 ctatagcgac acatgcgacg aggcatgttc gactagacaa ctatggtaat gataaggaca 5040 agtattcgcg acatgttaat ggcggctata ggaagcttgg ggggcag 5087 // ID Copia-9_PIT-I repbase; DNA; PLN; 5561 BP. XX AC AATU01000207; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PIT_; KW Copia-9_PIT-LTR; Copia-9_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5561 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000207; Positions 25672 20112. XX CC Positions [1987-2466] - Integrase core CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 1378..2466 FT /product="Copia-9_PIT-I_1p" FT /translation="MEPDPTWTIDSGCTRHVTHESQWLTDITSSGGSITVG FT GNNQIPIEGIGRVDLEVTDSKGTMQKLILHGVLYAPQLQFSLLSIPAAVKH FT DFRFNFDRKQCSMQTDQRFKIKALMATNTDLYQFQAKPAAPPAALIASGKQ FT RSFLLLHKRLGHPNVRVLNDLSRSQAIHGLDGSIPLGPKTDFFCVACTLAK FT SHRSPFYSNRVVKRATSPLSKVHSDICGPLPVPSLTGCRYFLIFIDDFSRF FT MFTYAIKSRSELYGCYEDFRKKALNIFRQDISVIEYAFSVEDNANQGNFEI FT QRLQADDAKEYEKLGRIIFKKYGTHAQFTNAYTPQQNGVAERRMRTIMERV FT RALLLDKSYRSSYGPSVSVM" FT CDS 2640..4796 FT /product="Copia-9_PIT-I_2p" FT /translation="MYLGVPDHKKGYRLMDINTHAIIYSRDVVFKEDEFPS FT LTGLTSTPETTQSTNRQKSTATLAHVPLPPATATTVAPEPEHVSEPVITPS FT PTSGPAMTTAPGTVNQRVLPSLREAVDRTAIHYSFRTETDSDPPHHSTPKR FT PRLSAEAIDSSEEANDVTLNSEEDIHEQEQRQHLLYTLLAIRYVSEPTTYR FT GAMKSSHANQWRKSAKSEYKSLMDNHTWVLVSPPKGRKILSSRWIFVVKYT FT GTGEIDRFKARLVIKGFLQEYGIDYNEIFSPVIRMEVLRLLLTIAALLDFE FT VHQMDVKTAFLNGYLEEEIYMAQPEGFKIPGKEHLVCKLLKSLYGLKQAPR FT VWYQTLSAFLENLGFLKLIKDRCVFRRTVADITCYIAVYVDDLLINAPTPA FT LVGELKSALKKRFSMSDLGEVKYLLGWSIQRDRKNRTMFIHKHKYATKVID FT RFSDYIPYPIATPAERNAKLSVSSQPSSEQEKDAMKSIPYRQAVGSVMYLM FT VGTRPDLAFYMREVSQFLANPGMDHWKAVIRGLKYLSGTKEYGLLLGGSTD FT ITSENLADQLIAYSDSDYANCPDSRRSIGGYVTMLASGPISWISRKHHTVV FT LSTTEAEYIALCHCMQEMIFLKLLLNELGFATTQANTIYEDNQSCIKICYN FT PELHGRSKHIHVRYCFVQEKVERHEFNITYCNTKEMIADIFTKALDKHQCR FT ELRAKLRMKCLKAGSGHSV" XX SQ Sequence 5561 BP; 1526 A; 1453 C; 1274 G; 1308 T; 0 other; agccaagcga cttcccacgt ctcattggcg ccgagaattt cgacgtctgg aagacccgtg 60 tgtgcgcagc actagatggc aagcacctac tcggctacgt gaagcagccc gactacgacg 120 gtgtgtcgga agacgagagt gaagatagtg gcagcgaaat gtctgatgcc aacgatgaac 180 cgcatgccaa aactaccaag aacgtcgaaa tcgactccga cgctgtggac tacgacgaga 240 gcgatgacga gctcaagccg ccctcggact cggacgaaga ctctggagcc agctccgata 300 cgtcaatcaa gaggaaggac ctcccggtag ttcgaccatt tagccatcgc gaggctcgcc 360 gtgcacgcaa acgcgccaag aaagagaaga agcagcctct tagccagcgc gaacgccgtc 420 gacaagaagc caagaccaat tccttcttga tgaaaacgat ggacaacatt cacgtgcggc 480 tcgtcaagaa tctcacgaca tccttcgaga ttttcagcta catctgccag aagtacgagg 540 gagcagcctt tcatggtgat ccgtacttct ttcaacacta cttgatggag atcaagtatg 600 aggaaggctc cgacttaact gagttctttc tcaagcttga gaacgcgatg aaagccgcgt 660 cagaagccac cgaatcggtg atgaccgagg gacagaagtc tatctacctg ttccactcga 720 tgcccaagtc gtggaaggcc gatctccgca cctgggaagg gccagcggaa gtatatccag 780 tatgaagacc tcaagcagag cattgaaggc aaggttcgcg atcttcaagc tcaagagcgc 840 tacactttgg ccaagggcac accagagtcc tctgcaacca agggtgagag agctctagtg 900 gctaccggac ctcctgtgtc acaagcccaa gaccgtgaca gcgccaatgt ctgttcctat 960 tgtgatcgcc cacgccacaa cattcgccaa tgccgaggcc ttcaaaagga tttgcgagat 1020 ggacgagtga aggctgggac agtgctacct gctaacttcg ccttcaaggg taactcgaaa 1080 cgcgatcacc cgtaccagaa ctcgaacaaa gttggcaatg ggcgacacgg caagaataat 1140 aacaaccgcg acttcaaggg caacaacagt agtagcaaga acaagcacgg aaatggcggc 1200 aaacaacgcg gtcaagatcg ctacaaggac cgcccgcttg agtcagacaa tgacgatgac 1260 gacgacagtg attctggaaa caaccgcaag gtaactcgcc aaaaacgtcg tgacaccggt 1320 ctcatcgctg ctgctaccac agtcaatctc ccgtttagcc tcactgctca agccaagatg 1380 gaacccgatc ccacctggac aatcgactct ggctgcactc gacacgtcac ccatgagtct 1440 cagtggctta ccgacatcac ctccagtggt ggatccatta cggttggtgg taataaccaa 1500 atccccatcg aaggcattgg acgggtcgat ctggaagtca ctgactccaa gggcactatg 1560 cagaagctta tccttcatgg cgtcctgtat gctccccagc ttcaattcag tttgctttca 1620 attccagcag ctgtgaagca cgactttcgc ttcaactttg accgcaaaca gtgctctatg 1680 caaactgacc agcgcttcaa gatcaaagcg ctcatggcta ccaacacgga tctgtatcag 1740 ttccaagcca aaccagcggc acctccagcg gctcttattg cctcaggtaa gcaacgttcc 1800 tttctgctct tacataagcg ccttggacac cctaacgttc gtgtcttgaa tgacctatct 1860 aggagtcagg ccatacatgg actcgatgga tctatacctc tgggtccaaa gacagatttc 1920 ttttgtgttg cctgcacgtt agcgaagtca caccgctccc cattttactc taatagagtt 1980 gttaaacgtg ctacatcacc tttgtcaaaa gtccattcag atatctgtgg tccactacct 2040 gtgcctagcc ttactggttg tcgctacttc ttgatcttca tcgatgactt ttctcgattc 2100 atgttcactt atgcaattaa gagccgtagc gagttgtatg gctgttacga agacttcagg 2160 aagaaagccc tgaatatttt cagacaagat atatctgtca tagagtacgc gttcagtgtt 2220 gaagacaatg caaaccaggg taactttgag attcagcggc ttcaagcaga cgacgctaaa 2280 gagtacgaga agcttggccg catcatattt aaaaagtatg gaactcacgc ccagtttacc 2340 aatgcataca cacctcagca aaacggagtt gcagaacgcc gcatgcgtac cattatggag 2400 cgtgtccgag cccttctact tgacaaaagc taccgaagca gttatgggcc gagtgtgtct 2460 gtcatgtgac cactctcatc aatatgactc ctagctccaa gacggatgga cgaaccccgt 2520 attagctttg gcacaaccgt attccatcca tgcagtacat caaagtattc ggatgcagcg 2580 gatatgtcca catcacggag caataccgag acaaactcga cgcttgagcc cgtttgtgta 2640 tgtatcttgg tgtgcctgac cataagaaag gctaccgtct gatggacatc aatactcatg 2700 caattatcta cagtcgtgat gtagtcttta aagaggacga atttccctct ctcacaggcc 2760 tgacgtctac tccagagacc acacagtcca cgaatcggca gaaatctacc gctacacttg 2820 cacatgtacc tctgccacct gcaactgcta ctacagtagc accggagcct gaacatgtgt 2880 cagaaccagt gatcacaccg tcacccacat caggccctgc aatgacaaca gcgccaggca 2940 cagtgaacca gcgtgtactg ccctcactga gggaggctgt tgatcgaaca gccatacatt 3000 attcttttcg aacagagacg gactctgatc ctccgcatca ttcgactcct aagcgacccc 3060 gcctctctgc ggaagccatt gatagctctg aggaagccaa tgacgtaacc ctcaactctg 3120 aggaagacat acacgaacag gagcaacgtc agcatttact gtacacatta ctagctattc 3180 ggtatgtgtc tgagcccact acgtatcggg gagcaatgaa gtcttcccac gctaaccagt 3240 ggcgtaaatc agctaaatcg gaatacaagt ccctcatgga caatcacact tgggtgttgg 3300 tatcccctcc taaaggaagg aagattttaa gtagccgatg gatctttgta gtaaagtata 3360 ccggcactgg cgagatcgac cgctttaaag cgcgtcttgt gatcaaagga ttccttcagg 3420 aatatggcat cgactacaac gagatattct ctcctgtcat caggatggag gtacttagac 3480 tacttcttac tattgcagct cttctcgact ttgaagtcca tcaaatggat gttaagacag 3540 cattccttaa tggctacttg gaagaggaga tctacatggc tcaaccggaa ggtttcaaaa 3600 tcccgggcaa ggagcaccta gtatgtaaac ttcttaagag cttatatggg cttaaacaag 3660 cgcctcgtgt atggtaccaa accttgtctg ccttcctaga gaatctcggg ttcctgaaac 3720 tcattaaaga tcgatgcgta tttcgacgca cagttgctga catcacctgt tacattgcag 3780 tgtacgtcga cgacttactg atcaatgcgc ctacaccagc actcgtcggt gagctaaaat 3840 cagccttaaa aaagcgtttc tccatgtcag atttagggga ggtgaagtac ttactcggct 3900 ggtcaattca acgtgaccgt aaaaaccgaa cgatgtttat ccacaagcac aagtacgcta 3960 cgaaggtcat tgaccgcttc agcgactaca ttccgtaccc tattgcaaca ccagcagaac 4020 ggaacgctaa actttccgta agcagccagc ccagcagtga gcaagagaaa gatgcgatga 4080 aatcgattcc gtatcgacaa gctgtaggta gtgtcatgta tttaatggta ggcactcgac 4140 ccgatttggc attctacatg cgagaggtca gccaatttct agcgaatcca ggtatggatc 4200 actggaaagc agtcattcgt ggtctaaagt acctatctgg aacgaaagaa tacggtcttc 4260 ttctgggagg ctcgaccgat attacatcgg aaaaccttgc cgatcaacta attgcctaca 4320 gtgactctga ctacgccaac tgccccgact cgagacgctc cattggagga tacgtgacaa 4380 tgctagctag cggtcctatc tcatggattt cgcgtaagca tcatactgta gttctctcta 4440 caacagaggc agaatatatc gccctgtgtc actgcatgca agagatgata ttcctcaaac 4500 ttctcctcaa cgaacttggc tttgctacaa cgcaggctaa cacaatatac gaggataatc 4560 agagctgcat caaaatctgc tacaaccccg aacttcacgg acgatcaaaa catatacacg 4620 tacgatactg tttcgtgcaa gaaaaagtag agcggcatga attcaacatc acctactgca 4680 atacgaaaga gatgatagct gacatcttta ctaaagcttt agataagcac cagtgtagag 4740 aactaagggc caagctcagg atgaaatgtc tgaaagcagg atccggccac tcagtttaga 4800 aataccctga taatacaagc gcatgaagcg tgtctatatt ctgcgttctt tttagaattt 4860 ttcccactgg ggtttattct tttttgttcg cacaaggttt tccctcgttg aggtttccct 4920 ggtcaagtac cgaattatct agacacatga gtttatcaat aataatccat gcttaacaac 4980 aaatttgtta gagatacgcc agtacatctc agtcgctttc accttcagca tttgtgtcac 5040 tggacacgta gtcggtgtca taatgtgtag attttgtggt ttctgtgtga caaatgacat 5100 catcactaaa taccccagct tagtgacttc ttcgatggag tggtggccac gtgtgctcga 5160 gaagcccctt cccttcctcc tccagcgtgg cgatgagaac tggcgcaagc tgcagtgctg 5220 tccgcggcgc ccgcttcttc ttctccctca taagaagcgc tctttgcaga tcggaaggtc 5280 tcagtgccca ccgaaatagc ctctaccgat gcgagggagc ctgcttcgta gcagcggcaa 5340 gtagagacga catgttgggc tccatccttg agttcctacc aggcgtgtca cttagcgtcc 5400 tccttcccta gcagaagctg cagggcaaag tcagatcggc tagcctaagc gacttcctgg 5460 cggcgtttca aggactgagg aaaagtccct taaagaaagt tttacctctg ttataacata 5520 gaattgtcag tttgataaaa tatgttcaga ggcagggagg c 5561 // ID Copia-13_PSo-LTR repbase; DNA; PLN; 172 BP. XX AC AAQY01000898; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-13_PSo_; KW Copia-13_PSo-I; Copia-13_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-172 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000898; Positions 41190 41019. XX SQ Sequence 172 BP; 62 A; 47 C; 37 G; 26 T; 0 other; tggatacttc gcacaaacga caccacaagg cttggaacaa cgacacgcta gctagacaac 60 cgaactacaa gagggaggca catgagagaa gagatagcag tagctagcgc gcaaaagcaa 120 aataaactca cttcacattc ttctcctcgc agcgcaagtg aaccttccga ca 172 // ID PiggyBac-1_PI repbase; DNA; PLN; 3999 BP. XX AC . XX DT 18-MAY-2011 (Rel. 16.05, Created) DT 18-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; piggyBac-1_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3999 BP; 1037 A; 947 C; 1113 G; 902 T; 0 other; ccccttagtt cccgtatgtt tagccgctaa acataagagg tgtatagctt ctttcagttt 60 ttttcggcat ctatgttatg tttagcggct aaacataaga gaaaaactga cttggagttt 120 gtattgaaca gatctcaaga gagcgcagga aagctcaata ctgaagtcaa gacaaaagtg 180 ggagcctaaa acggccggat gcacaggctt agggtagctg gaccggattc ctgattgaac 240 gagataaaga gaggcggtgt cacccaccac caacgggtgg ccgacagtca caaaactctc 300 tcatacttca aaacgaccgc gggggcagca gaccagaatg gtggcgacgt ctggcaagat 360 gccacgacgg acgctgacag cggaagagac ccggttgtgc aaggcagccc tcagtgaccg 420 ccacaagcgt cgccttcgtc gagacgacga gaggcagtca gcagcagagc caaagcatgg 480 cgctgagggg cgtgcgttga agaagcagtc taggaagagg gcggtgaaac ttacgacgac 540 agccatggag atagcagagt ctagaggtcc acatattgag ccggcagcac ccaaagagac 600 agaagcaaca gcgagtacgg acgaagctaa agaggtaata cctgttgcag aaaatgagga 660 agattctgtg gaaccagagg tggaggaagt tgtagcagac gtggtgatgg ctgtggcttc 720 aactgtggct tcaagtgcgc ttctaacgcc tgtgcgagat gctcaaggcg ctgtggagac 780 cttgcgcccc cctcggacga acaagcaggc gccggttacg caaagatccc cgaaacgacg 840 ccgccgcgtc ctacaagaca gtccagaacg cgaagctcaa gctgaaggca ccataagtga 900 caccacagac accggtgctg cgtcagctgc cccgcatctc cctgtcgcct gcgtagtcga 960 cggtgatcct aacatcatgg cggctggtgc acgtgagtgc actggcctcg gatcagaaga 1020 ggaatctggt cctgattcag acgatgacga cgcggacagt gagtgggaag gagattggga 1080 gcttggagaa ctctctgatg aggagttagc cgattgcgtt ggaactgaac taccggacac 1140 gttctgcaag tcggtggcga tgaatgcggc gcgtttggcg gagatgaaac attctggctg 1200 ggagtatggt aagttatgtt gaacgctatc caacatacgc aactattatt ccgtcgttgt 1260 ctaacataat gttaacatta tctaactcac tttgatgtgc tatttgtaga ccagtccaaa 1320 tttggagaca atcctacgta tgaagacctt tacgacgggc cttatggacc atctgagagc 1380 gtccttggag tggctgaaga cccactggcg ctgttcttct actacctacc gccaaaattg 1440 tggagacaga ttgccgtcga gagcaatcgc taccacacgc agtcgatacc gggtcgtgcg 1500 caggcgattc aagcgaagca gcgtcgtggt ggtggagaag tagagaacct cgcagatatt 1560 cgtcggcgac tagcacgtgt gaagccgata gaaccgtggg aggttttgcg cgtcatcgcg 1620 cttctcattg caaggatgct gtctccagtg cgaaagggga ttgctgctca ctgggagttg 1680 acaccggctg gtgcgttgcc aacgccacgc ttcggcaagt acatgtcccg caaccggttc 1740 ttccacataa tgggatactt gcacttctcc aacaacaagt cgcctcaagc tagcacggat 1800 cgtgtatgga agattcggcc ggttatcgag gttttacagc gtacatttgc gcgcggctac 1860 aagattcctc ctgtcattag ctttgacgaa gctacgctgc cttcaagatc ccgctacaat 1920 cctaccagac agttcaacaa ggacaaaccg cacaagtggg ggaccaaggt gttcgtggca 1980 gcgtgtgcag atacagctta ttgcatgagg tgcgttcaag gtggcaagct aatgcttgcc 2040 accttttttt tggtctaagt gcttatgttg gacgggcaaa catccacatt gtggagaatt 2100 tcctaatcca acatatttat tacttttact aatatcgtgt gcgtttgtgc gactgttcag 2160 attcgaggtg tactgtggtg ctaagagtaa tctccggact ccgattcctg ctgataataa 2220 ttgcggcgag gctgccgtac taaggaacat gaacgcgctg tgcccgccat caccgacctc 2280 cccgtggcgt ttggtaatca cagaccggtt ttacacgtcg gtgaagctgg cgttggagct 2340 gttgcagcga cggatgtaca ttacgggtac gatccagacg cgtatggcag ggtacgcgaa 2400 ggatgtgaag actgacaagt cttacagaac cgtgaatggt gtgagagagc tagtaccacc 2460 acaggggaca atcaagctgg ctgaaaataa gctttttccg cagataaccg cagcaatgtg 2520 gatggaccgc aatcccgtcc acatgctgag cagtggtggc agcagagaaa cagtcagtgt 2580 cagtaagtaa gcctgtgtgt ttatatatat gtatcattgc tcactattgt gcttttttat 2640 tgtagtgcgg cgtatcaaag gccagatgaa agagctaccg gcaccggagc tggttcgtga 2700 ctatcaccga tacatgggag gtgttgatgt gcacgaccag ctccggatgc aacgctacag 2760 cgtgcagctt tcgtacaaat cacgaaagta ctacaagacc ttgtttctcg gattgctgga 2820 catggcgttg gtgaacgcct ttattgtgta tcgacacaac cagcgtgcca atgggcacaa 2880 atccccgaag cattccgcat tcttcgagac actcatggaa caactacttg ctgttgatga 2940 aaactctttc gctgagattg aggtaagttg ctatgatggg tttggcaaca taaatgcatt 3000 tactaatatg tgttatgttg gttatgtttc ctattctaga aatccacctc cgctgaggag 3060 cgtacagccg cttcacctgc acgaggagcg tcgccaagac gggaggagca gcgacgtggc 3120 tcagaccgca ttgatgatgg ccacgaactg gcggagaacc cagacaaggc cgacactgaa 3180 accggaaaga agcgtcgcca cagaacctgc aaagtgtgtg ctatctacaa ggtggtgccg 3240 cggaagtata cgaagtatta ctgtccagaa tgctctgcag ggccaaagag gtacgtacat 3300 gctgttcatg cttgatacta acacggtgat agcgctgact gtaggttgtg ccgcaggaag 3360 tatctctgca acgttgttag ggaggaaagg gagcgcacgt gctttcagat atggcacctc 3420 gactggaaga acgggaatga catcccgagc cgcttgctac gcgaccacaa gatacgcgac 3480 cgagcgccag cggagcgtcc aggcaagaag cgacaccgcc gacgtgatgc gagcggcagt 3540 gaggcgtgcg cgagtgaagt agcagcgggt gggtccgacg ctgacgcatc cggcgatgcc 3600 gatgaccagg ccccgaacaa agacgctgct gcagaggggg agcaatcgta gtgtgcgccg 3660 tttgcgtgtg caatcaaatg aatagtggtt acattgattt gcttctattg gctatttctt 3720 ctttacttga cgtgtgcaat gttacacaga caatgatctc aataaacagg ccatttacaa 3780 tgttgcatca gtcatcttat gcagcagtac aactgagaaa atccaacatg aaacaggaat 3840 atgttggatg tgctcgtttt tatccattag caaccctgca ctatccattt gcatagctgg 3900 acgaaattcg gggccataca aattcctata ttaaattatg ttggagctcc aacataagat 3960 caaaatatac ccctgacttt tcggccggga actaagggg 3999 // ID Copia-8_ES-LTR repbase; DNA; PLN; 185 BP. XX AC CABU01000625; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_ES_; KW Copia-8_ES-I; Copia-8_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-185 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000625; Positions 14690 14874. XX SQ Sequence 185 BP; 47 A; 42 C; 47 G; 49 T; 0 other; tgttggaagt gcttgtagta caagaacggc tctaatctac tgcatggtta tgcggtattg 60 tgaaggcgtc gccaagtctg taaccgtcgt caggtgaaga cagcttgggc gtcggtgtga 120 agataataca atcactctgt gtttctctac ccaagcctcc gtcacataca gagccatagc 180 ataca 185 // ID Gypsy-11_PR-I repbase; DNA; PLN; 4745 BP. XX AC AAQX01003596; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PR_; KW Gypsy-11_PR-LTR; Gypsy-11_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4745 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003596; Positions 512 5256. XX CC Positions [3565-4071] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 193..4707 FT /product="Gypsy-11_PR-I_1p" FT /translation="MPGFTVDSDGDVEMATPQPIFEEIRAPELTSWEHAAL FT FEWHREWERYAEKIRHRCTMTGETYDTVIATVKGSVRRQTLKNLAKYVLKK FT PMASVTDADIMGVVVSRCQTLKNEFVPDVSSLVRAKLKMDLSIDDCDARIF FT RYYEDFNGIVEDNGLQGQIGAENEEDSGYMSRMKARCRLLLENLQPPVLKA FT QIGRLIELERRDCKNDDVALFDLILEHAKVQQRFHRMLQDYAGKTDAKAAK FT VDQKQQRAAGPKPATLRPPTSSSCTATQAPSAPKPVRADPHDGCLVCKGSH FT WLNDCPTATETQRAEALKKYREAKEQRSRTLQSKATRYVTPPGTVRINGLL FT EVLYVPDTGADKSIIPQGIVDSLRAVQPLLSPVTLSTSVVAEMADGRRVEC FT RQEIVVDLELSTIAGPVSMRSVSCLILLGEGDEFLLGRDALKELGIDVEGQ FT LAQLASPSLLDGDIDEFPVGDGLPDEHEELPRIVTLDDLMGRAISNGLPEE FT HASTVRDMLSLFPNIWRETVSRDPPARVEPLRVTIQDGSVPYRSPVRKYAP FT LQAQFIREYVQSLVANDLVEKNNASRWACAVVPVRKPGSRDQFRMTIDYRP FT VNRVTVPIAGSMPTNATTTDAFSGKKFFGSFDFTQGFWQLPLHEDSREVFS FT FITEDGVFTPKRVPQGATDSALHFQGEMQRVLSPMIPHSALVWVDDVILFT FT DTVDEFLKVLNQFFSLVATARLKLNMSKCSLFEVEVLWCGRLISGAGIRHD FT PTRVEALSSLQLPETIADLQYFVFATNWLQDSLPDYARMAAPLQEKLVAEK FT KRVGSRNRNALNVATSWTQIEKLAYEAMLALVRDSALMASPDPDAELLVFT FT DASLTGYSIVVTQVVDWDPALPVTKQNHQMIICKGGTFKHNEFNWTIIEKE FT AYPIVKACQDLEYLLLRSKGFRLYCDHSNLVYIFAPHDTLKKHVRDRLQRW FT AMRLCGLHYTIDHISGSDNVWADIVSRWRTRAVVHVAAVRTRGSNVVPVVD FT LSSLRPLADPDFVFPTVADIISAQTAAGREQSRLQAVLSEENGVLVAYGRP FT WVPSGVKDLLARIFVVAHCGSQGHRGQKAITLVLKERFHVVKLEDKVAKFI FT RQCLLCKHFKGPRLIPRPYGPLLTPAKRNEIVHWDFLYLGEGYGDTAYLLV FT VKDGLSHFCELFPCATPTAYVAAEALLMWHARYGMPKTLLSDQGTHFRNET FT VKHLATRLKIEQNFTPVYSPWLNGTVERLNKDVLQVLRALLLEYSLDSHEW FT PYLLPAIQANLNHTPVRSLAGHSPVEVFTGLPASSALDVLVAPANESAEER FT VIELGDIGSQLDRLRASLQGIHLEVTDSKERKRLQDMRAHKGTSVNFDVGD FT FVLWSRIDQRLPSHKLLGQWLGPFKVIGALPHSFKIEHLVTGRVYEVHASR FT LKFYADTELNTTEELLQLVASQGMVLGVESFRQHRFNDQFGRWELLVSWVG FT LQAIEDSWEPLSTLMQDVPAKVRDYVAGLSDEDDLRVQID" XX SQ Sequence 4745 BP; 1086 A; 1211 C; 1295 G; 1153 T; 0 other; aagctagctt tgcgctcttc gaagcgtgag tttgttgatc tcttcggtgc gcgtggcgac 60 tgaaggaatc ctgttcggcg ttggactcca gaaccgagtc acgtcgataa gtacggactt 120 tgaaaagttc ggtactccct aagtgcggtt ctgttaagtt cgccttaggt tcggttggag 180 tgaacttcaa caatgccggg tttcacggtg gactccgacg gtgatgtaga aatggcgacc 240 cctcagccaa ttttcgaaga gattcgtgcc ccagagctga ccagctggga acatgccgct 300 ctgttcgagt ggcatcgtga atgggaacgc tacgcggaga aaatacgcca tcgctgcacg 360 atgactggcg agacgtatga cactgtcata gctactgtga agggttcggt gaggcgccag 420 acgctcaaga atctggcaaa gtatgtgttg aagaaaccaa tggcatctgt cactgatgcc 480 gacatcatgg gtgtcgtggt gtctaggtgt caaacgctca agaacgagtt tgtgcctgat 540 gtctcttctt tggtccgtgc gaagttaaag atggacctat cgattgatga ctgcgacgca 600 cgcatcttcc ggtactacga agacttcaat ggaatcgtgg aagataatgg cctccaaggc 660 cagattggtg ctgaaaacga ggaggactct ggatacatga gcagaatgaa agctcgttgt 720 cgcctcctgc tcgagaactt acagcctcct gtgctcaagg cacaaattgg tcgccttatc 780 gaattagaga ggcgtgactg caaaaatgat gatgtcgccc tctttgattt gatattggaa 840 catgcaaaag tccagcagcg atttcatcgc atgttgcaag actatgctgg taagactgac 900 gccaaggcgg cgaaggtgga ccagaaacag cagcgtgctg caggccccaa gccggctact 960 ctgcgaccac caacttcgtc gtcatgcacg gcgacacagg cgccatcggc cccaaaacca 1020 gtgcgcgccg acccccacga tggttgctta gtgtgtaagg ggtcacactg gctaaatgac 1080 tgccccacag ctactgagac acaacgagct gaggcactga aaaagtaccg tgaggccaag 1140 gaacagcgct cccgtactct acagtccaag gctactcgct acgtcacgcc tcctggaaca 1200 gttcgcatca acgggctact tgaggtcctg tacgttccgg acactggtgc tgataagagc 1260 atcatcccgc agggtattgt cgactcgctt cgtgcggtac aaccgttact ttctccagtc 1320 acactaagta cgagtgttgt ggctgagatg gcggatggcc gacgagttga atgcaggcag 1380 gaaattgtgg tggatttgga gctgtccaca atcgcagggc cggtatcgat gcgatcggta 1440 tcatgcctta tcctgttagg agaaggcgac gaatttttgc tcggccgtga cgctctgaag 1500 gagctgggta ttgatgtcga aggtcaactt gcccaactcg ccagtccgtc cctccttgat 1560 ggggacattg atgaatttcc ggttggtgat ggtcttccag atgaacacga ggagcttccc 1620 cgaatcgtga cacttgacga tctcatgggc cgtgcgatct ccaatgggtt acccgaagaa 1680 catgcatcaa cagttcgtga catgctgtca ctgttcccta atatttggcg agagactgtc 1740 agccgtgacc cacctgcacg tgtggaacct ctccgtgtta ctatccagga cggatcagtg 1800 ccttatcgca gcccagtgcg caaatatgcg ccacttcaag cgcaattcat ccgggaatac 1860 gtgcaatccc ttgttgctaa tgatctcgtg gagaagaata atgcctcacg gtgggcgtgt 1920 gctgttgtcc cggtccgcaa gccaggatct cgtgaccagt tccgcatgac aattgattac 1980 cggccggtca accgtgtgac ggtgcccatt gccggctcaa tgccaactaa cgctaccacc 2040 acagatgcct tcagcggcaa gaaattcttt ggctcctttg actttacgca gggtttttgg 2100 caattacccc tgcatgaaga tagccgagag gttttttcat tcatcacgga agatggagtg 2160 ttcacaccaa agcgagtccc acaaggagcc acggactcag ctctccattt tcagggggag 2220 atgcaacgcg tgctgtcgcc aatgatcccc cattcggccc tggtatgggt cgacgacgtc 2280 attctgttta cggatacagt tgacgaattc ctgaaagtgt tgaaccagtt tttctcgttg 2340 gtagccactg ctcgactgaa gctgaacatg tcgaagtgct cgctgtttga ggttgaagta 2400 ctctggtgcg gacgtctcat ctcgggcgct gggattcgtc atgatccgac tcgtgtggag 2460 gctctgtcct cgctccaatt acctgagacg atcgccgatc tacagtattt tgtctttgcc 2520 acgaattggc tgcaagattc tctaccagat tatgcgcgga tggcagcccc acttcaggag 2580 aaattggttg ccgaaaagaa acgtgtcggc agtcgtaacc gtaacgcgct caatgtggct 2640 acatcctgga cgcagatcga gaaacttgcc tatgaggcca tgctcgcgct tgttcgggac 2700 tctgcgctca tggcatctcc agacccagac gccgaactgc tagttttcac ggacgcaagc 2760 ttgactggat actccattgt ggttactcaa gttgttgatt gggaccccgc tctgcctgtc 2820 accaagcaga accatcagat gattatctgc aagggcggaa ctttcaagca caacgagttc 2880 aattggacta tcatcgaaaa agaagcttat cccatcgtga aagcttgcca agatctggag 2940 tatttgttgc tgaggtcgaa gggatttcgc ctttattgcg atcactcaaa cctcgtctac 3000 attttcgcgc cccacgacac gctcaagaaa cacgtccggg atcggctcca acgatgggcg 3060 atgaggctgt gtggacttca ctacaccatc gatcatattt ccggcagcga caatgtctgg 3120 gccgacattg tgtcacgttg gcgtactcgt gcagtggtcc atgtggcagc ggtgcgaacg 3180 cggggaagta atgtggttcc tgttgtcgac ctatcatctc ttcgcccgct tgcggatcca 3240 gattttgttt ttcccaccgt ggccgacatt atttcggcac agactgcggc tggccgcgag 3300 cagtctcgat tgcaagcagt tctttcggaa gagaatggtg tgctagtcgc ttatgggcgt 3360 ccgtgggtcc cttcaggagt taaagacctg cttgcccgca ttttcgttgt cgcacattgc 3420 ggatcgcaag gccatcgtgg tcagaaagcc atcacactcg ttctaaaaga acggtttcat 3480 gtcgtgaagt tggaggataa ggtggcgaag tttattcgcc agtgtctgct ttgcaaacat 3540 ttcaagggtc ctcgcctcat tccccgaccg tatggcccgc tactcacacc agcaaagcgg 3600 aatgaaatcg tccattggga cttcttgtac ctcggcgaag gctatgggga cacagcgtat 3660 ctccttgtgg tcaaggatgg actttcacac ttctgtgaac tatttccgtg tgctacccca 3720 acggcatatg tggcggccga ggcgctgtta atgtggcatg cacgatatgg tatgccaaaa 3780 acactgctgt cagatcaggg gactcacttc cgcaacgaga cggtaaagca cttggcgacc 3840 cgactgaaga tcgagcagaa ttttacacca gtgtactctc cgtggctaaa cggcactgtc 3900 gagaggctga acaaggacgt tcttcaagta ctacgggcgc ttctattgga gtactcgctg 3960 gatagccatg aatggccgta cttgttgcct gcgattcaag ccaacttgaa ccatactcca 4020 gtgcgatcac tggcaggtca ctctccagtc gaggtcttta ctgggttacc cgcttcgtcg 4080 gcgttggacg tgctggtagc tcctgcgaac gagtccgctg aggagcgagt cattgagctt 4140 ggagacattg gcagccaact cgatcgattg cgcgcctctc tacaaggaat tcatctcgaa 4200 gtcactgaca gcaaggaacg gaaacggctg caagatatga gagctcacaa aggtacgtcc 4260 gtgaacttcg atgtgggcga ttttgttttg tggtcaagga ttgatcaacg actaccgagt 4320 cataaactat tgggacaatg gctcggtcct ttcaaggtca ttggggcgct accccactcg 4380 ttcaagatcg agcatctggt gactggacgc gtctatgaag tacacgcctc caggctgaag 4440 ttctacgctg acacggaact gaacacgacc gaggaattgt tgcagcttgt tgcgagtcaa 4500 ggtatggtac ttggcgtcga gagttttcga caacaccgtt tcaacgatca attcgggcgg 4560 tgggagctcc tggtctcctg ggttggactt caggcgattg aagattcgtg ggaaccactg 4620 agcaccctga tgcaagatgt tccggctaaa gtccgtgact acgtggccgg tctcagtgat 4680 gaggatgatc ttcgtgtaca aatcgactaa cggaggcgct cggcacaatc gagctttgga 4740 ggcag 4745 // ID Gypsy-15_PSo-LTR repbase; DNA; PLN; 1966 BP. XX AC AAQY01000229; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PSo_; KW Gypsy-15_PSo-I; Gypsy-15_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1966 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000229; Positions 4045 2080. XX SQ Sequence 1966 BP; 482 A; 480 C; 527 G; 477 T; 0 other; tgacacgagg cagtccacag aaaatcgccg acgatgtgcc gtcacctctg tgacctggag 60 tttgtatcag atgatgattg ctggatgact tggatacggc gcggctgtac ccgtgtgaca 120 tggatggcga ctgtgggaga gaagtgattt ctcgggataa atccagcgtc tgaccgcaga 180 tgggcccaac tggctggaag tgtgaatcct gggagtgcac acccagaatt tcagagaaca 240 ctcagtccag ccgcggactt tcccttacga tgagtgccta aagtctggcg gaaagtgtct 300 ctggagaatg tatcccagag tacgcctcat cttgctgtgg ctcagagtgc cccagaggat 360 caaattaccc tgagaatcaa cccactacta ccatgatcat gcgcaggagg ccactaaacc 420 cactaaaagt gtggctttga ggagatacac acgagtctgc actgcagcag acttgttacc 480 cagagtgccg cacggaaaac ctagagtgcc gcacgatgac ccagagttca cctccctgag 540 tgcaggtgac ccagagttcc aaagatgatt ccctgggttt ggaccataaa tccagactct 600 ctatactgaa cttaagtgtt tcccgagcca acacccaaga atccccacag ttccccaaga 660 ttcctcagaa ttcccaggat ttcagaagat gaccctgagt gtcacctgat tttcagggat 720 tcgagtcagt tcgaagccag tctgcaatca aaatgatgcg tgaccttgaa gaaccgtcat 780 ggatgcacag actggatact ttcgaggagt cgagagggag tcctgcacca tactaaacca 840 agtctaagga cccacaattg gcactttcga cgccgtgcga caatggattc gcaagccgat 900 cgcaagattg gaccgctgat cccaaggtat actcaagaca agacattttg accccaagca 960 tagtgaacag aagatatttg cccgaagaag agagagagag agaagtagct gataaaaacc 1020 aaacagagtt cattttaccc tgtactgcgc aagtgacttc ggccaagcct gccgacggaa 1080 atccgaagga cccgagacta cgaccgcggg acgctaaggg cacatcaatg gcgaaggaca 1140 gccgtctgtg tgggctccat caaactcaag tccagttagg tggtgaccag cgacggcctt 1200 gagcttcctg gggtgatcca tctattccat atcctagttg ggtcacttgc tgtgctcgtg 1260 gtagcccatt tcatattatt ccagagggta ttctggggtg ctaggtagtc gcctccagga 1320 ttttgtattg actgcttgtg tgaagggaag gtaactgata gtgattatat tttcctcctt 1380 tattggaggt ggtgcgcgtt tgtgtgagtc tcaggggagc taggcccctg aatttcagac 1440 tcgagtgagc ctagtgtgtg tgtgacccac cgtccaaggg tccaaaagaa taagtgacgg 1500 ctagttgtag tgattgtata ctctgtattt gttggtttta tcgagctagg agggcatttg 1560 ggtaaggtgt cttctgagtt ccaagtccca gagttgactg aaatcctgga ccctgaattc 1620 gtgatattct gggtttcagg ggatctgatt ctctgggttt gccttttggt gtggaggtgc 1680 gttctgaagt agacgtgcgc tcccgcactt cttcgaggct acattttcaa ccggtggagt 1740 gccgttccgt cgaagacaaa cgagccgaca gggattacac aaggtaccca cgccaaccaa 1800 ggagtgtgat tcacagggtt taaagctttt gcggctgcga atctcggggt ctatcttctt 1860 gctgttgact ctcaagtcga ctctctgggt ctacccctgg ggaacagtct tgggctgcgc 1920 tatacgaacc cccctgggcg acaaaggttt catcggcctc gcctca 1966 // ID Gypsy-58_PIT-LTR repbase; DNA; PLN; 165 BP. XX AC AATU01004468; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-58_PIT_; KW Gypsy-58_PIT-I; Gypsy-58_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-165 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004468; Positions 18492 18328. XX SQ Sequence 165 BP; 42 A; 41 C; 37 G; 45 T; 0 other; tgccgtatcc cgaacggcca tcgtctagaa tgctcgctgc gttctagagc gccgatcata 60 agatttgatg ttctagaaga gctaggagat gtagttgcta cagctaggct aaacactaac 120 gcttaattca ctcagtctcc tttttactgc gtcaagcata cggca 165 // ID Copia-3_PSo-I repbase; DNA; PLN; 3972 BP. XX AC AAQY01000249; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_PSo_; KW Copia-3_PSo-LTR; Copia-3_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3972 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000249; Positions 333452 337423. XX CC Positions [1584-1958] - Integrase core CC 'GGAAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 5..1651 FT /product="Copia-3_PSo-I_1p" FT /translation="MSSNTTTAFTTKLRKFDGSGYRVWARQLQLYLEVKDV FT WGAVLKPAPTSLQLANEEPGQADRPLQQRERPLHQLELQQKLAMTIILSAL FT TDDQAALVADLTHPQEMLQALQRTHRHVCDTTVGALKRQYMSLYIDAGGDM FT LEHIRQTRLMLAELDCYKVSLSDAEKKSNFLQSLGPDWNGYIGALEACGSM FT EELLIKAAAEARRRSTQSQRSKHGGSQAVSSGNAFAAFAASSHGKRGVKKG FT KCYNCGKRGHFENESKSKKQFGGAFGNAAAREDSDDEAEAGFVFQVSTQAA FT EADWIIDSGASSHMTGTSGLLLNLHEMTSSVVVTTASGTTLTTIHSGKAHL FT PLITGGFCTLDSVLYVPGLQRNLVSLSKVGAAGLTATFDHALCVISSGGAK FT LVATRRSSGLYVVSTPNAGNCAEADYASGGGSDDLAIWHARLGHLNARDLK FT TLLKAGGIATTTTQLRPYEGCAAGKLASRPFPAKKPRDLKRGQVLISIDYV FT GPMETTSRDGFTGMVSMMIEPYHLAAVFPVKDKSSATQLRALRERIANLKV FT AV" FT CDS 2276..3259 FT /product="Copia-3_PSo-I_2p" FT /translation="MESGGSSTSEQSRQSLADPRVEKQVVRRSTRIKKKSV FT RRLEFEESHNTQELALVSELQDPLTLQEAMSRPDAEQWRQAINEELESLRW FT NGTYEEVFRSGNVRPVQTKWVFHRKTLADGSLDKYKARPVAKGFTQQFGVD FT YTESFSPVARHDSIRAILALAVQLNWEHLQLDVQTAFLNSDLSEAIYVTPP FT TNESEDKVWRLRKALYGLKQASRAWFETVTKFLCDAGFVQCQSDTCVLVKC FT TTDGIVVVLLYVDFQQRCVGTGFVSSQDHPSICNQLVHCFQQLRGNGAVME FT SHGGYADDFTAEVCYSSGEALHGPRRQAAATHPDGV" XX SQ Sequence 3972 BP; 920 A; 1051 C; 1217 G; 784 T; 0 other; ggttatgagt tccaatacca cgactgcctt cacgaccaag cttcgcaagt tcgacggctc 60 aggctatcgc gtctgggcgc gccaactcca gctgtatctg gaagtgaagg acgtgtgggg 120 cgctgtgctg aagcctgcac cgacgtcgct gcaactggcg aacgaagagc ccggccaagc 180 tgatcgtccg ttacagcaga gagaacggcc gctgcatcaa ctggagcttc agcagaagct 240 cgccatgacg atcatcctgt ccgcgctgac ggacgaccaa gccgcgttgg tcgccgatct 300 cacgcacccg caggaaatgc tgcaagcgct gcagaggacg caccgtcatg tgtgtgatac 360 gaccgttgga gctctcaagc gacagtacat gtccttgtac atcgacgccg gcggggacat 420 gctggagcac atccggcaga ctcgcctaat gctggccgag ttggattgct acaaggtgtc 480 gctgtccgac gcagagaaga agagcaactt cttgcagagt ctcggccccg actggaacgg 540 ctacattggt gcgttggaag cgtgcggctc gatggaggag cttctcatca aggcggctgc 600 tgaggctaga cgccgctcaa cgcaaagtca acggagcaag catgggggca gccaagctgt 660 cagcagcgga aatgcgttcg ctgcgttcgc tgcctcatcg cacgggaaac gaggagtaaa 720 gaagggcaag tgctacaact gtgggaagcg cggccacttc gagaatgagt ccaagtcgaa 780 gaagcaattt ggaggagcct ttggcaatgc cgctgctcgc gaggacagcg acgacgaagc 840 cgaggcgggc tttgtgttcc aagtgtccac gcaagcggcc gaagctgact ggatcatcga 900 ctctggagca tcgagccaca tgacgggcac cagtggtctc cttttgaacc tgcacgagat 960 gaccagtagc gtcgttgtta cgaccgctag cggcacgact ctgaccacaa ttcacagcgg 1020 aaaggctcac ctgccgctga ttactggagg gttctgcacg ttggatagcg tgctgtatgt 1080 acctggactg cagcgcaacc tcgtcagctt aagcaaggtt ggggcggccg ggctcacggc 1140 cacgttcgac catgcgctgt gtgtgatctc cagcggcggt gcaaaactag ttgcaacacg 1200 ccgtagcagt gggctgtatg tcgtatcgac gcccaatgcg ggcaactgtg ctgaagccga 1260 ctacgcgtct ggtggtggat cggacgattt ggcaatctgg cacgccaggc tcggacacct 1320 aaacgcgcga gatctcaaga cgctgttgaa ggctggcggt atagccacga ccaccacgca 1380 gctgcgaccg tatgaagggt gtgcggctgg gaagctggcc agtcgtccat ttccagcgaa 1440 gaagccacgc gacctaaaac gtggccaagt actgatctcg attgactatg tggggccaat 1500 ggagacaacg tcgcgagacg gcttcacggg catggtgagc atgatgatcg agccgtacca 1560 tctggctgca gtattccctg tgaaagacaa gagctcggcc actcaactcc gcgctctacg 1620 agagcgcatc gctaatctca aagtggcggt gtaagaggcg caatgctgta ctgaagagtg 1680 acaacgccgc ggagtacatt ggcggggaga ttgcagaatt cagcaatgag aacatgatcg 1740 cacaagagtt cagcacgccg tacagcccgc agcagaatgg caaagttgag cgcagcaacc 1800 gagttgtcgt cgagatggca cgctccatgc tacaagcagc tggtatgagc aagcgcttct 1860 ggagcgacgc tgtcaagact gcagcgtaca tccgaaaccg ctgcccgtcc agagtgctcg 1920 cgggcaaaac gccaattgag gtgctgacgg gtcacgcccc cgtattgagc aagatgcgcg 1980 tgtttggctg tgacgctgaa gtgctgttgc cgaaatcgca gcgacagaag ctggacgcca 2040 agactgctaa aggcgtcttt attgggtacg aaaagagcgg aggctaccgt ttggtgccca 2100 gtggtcacgg aggcagtggg agtgtcgttg cgtctcttac tgcggcgttc ttcgagtcca 2160 gtattccgaa gagtagacta tcacgctgga cggagacctg ccagcgccga cgcaacagga 2220 ggtgtcaagc gatcaagtgc cgactggtct ggacgccatc caagaagaca tcgcaatgga 2280 aagcggtgga tcatctacta gcgagcagtc gcggcagtcc cttgctgatc ctcgggtgga 2340 gaagcaggtc gtgcgtcgca gcactcgcat taagaagaag agcgtgcgaa gactcgagtt 2400 cgaggagtcg cacaacacgc aggagctggc tctggtaagt gagcttcagg acccgctgac 2460 actgcaggaa gccatgtccc gaccggatgc cgagcagtgg aggcaagcca tcaatgaaga 2520 gctggagagt ctgaggtgga acggcacata cgaagaagtg tttcgctcag gcaatgtgcg 2580 acctgtgcaa accaaatggg tttttcaccg caagacgctg gcagatggct cactggacaa 2640 gtacaaagcg agaccagtgg cgaagggttt cacgcagcag tttggagtgg actacacgga 2700 gtcattcagc cccgtcgccc gtcacgactc cattcgagct atccttgctc ttgccgtgca 2760 gctgaattgg gagcacctgc agctggacgt gcaaactgcg ttcctgaaca gtgacctctc 2820 agaagccatc tacgtcacgc cgcctaccaa tgaatccgag gacaaggtat ggagattgcg 2880 taaagccctg tatggattga agcaggcgtc acgcgcttgg tttgagaccg tgaccaagtt 2940 cttgtgcgac gctggctttg tgcaatgtca gtcggacacg tgcgtcttag tcaagtgcac 3000 cactgacggc attgtggtgg ttctcctgta tgttgatttt cagcaacgct gcgtcggaac 3060 tggcttcgtt tcaagccaag atcacccgtc gatttgcaat caactagtgc actgcttcca 3120 gcagcttcgt gggaatggag ctgtcatgga gtcgcacggg ggatatgctg acgatttcac 3180 agcagaagta tgctacagca gtggtgaagc gcttcatggg ccgagacgac aagccgcagc 3240 cacacacccc gatggagtgt aacttccagc gccaagtaat cgatgattcc gagttgatcg 3300 acgaaacatt ccgccctgcc gtcggatcac tactctacgc atcgactgtg agccaccctg 3360 gcctggctac ggcggtacgt ctcgttgctc aagagaccga gcagccaaca cgcaccgtga 3420 aggacgggat tgaccgtata gtcggctact tgaagaggac tgtcgacagg gggctcgtat 3480 atcgacagtc gaacaagcgc gatctgcagc tcgaggtgta ttgtgatgct gcatttgcct 3540 gcgaaaagga gcggaagtcg tcaacgggct tcgtcgtgtt cctcaacggg tgctgtattg 3600 cttggggatc caagaaacag ccgatcgtca cgctgtcgac taccgaatcc gagtacgtcg 3660 ctgtagctca cggcatcaag gagtgtattg gactcaagca gctgcttttc gagctgggtt 3720 ttgacgtcgg caagataatt gtccacgagg acaatcaagc agctcagcat gtggcggaag 3780 gcaaaggggt ctcgcagcgt tcgcggaaca ttgatctacg gtaccactgg gttcgagagc 3840 aggtgcagaa agacattgtg cagatcagct actgcgcgac ggcggtcatg gttgcagact 3900 tgttcaccaa gccgctgcct caagacaagt tcaacttgtt cgtcacgagg cttggtttgt 3960 gccgagtggg ag 3972 // ID Copia-17_PIT-LTR repbase; DNA; PLN; 275 BP. XX AC AATU01002470; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-17_PIT_; KW Copia-17_PIT-I; Copia-17_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-275 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002470; Positions 48475 48201. XX SQ Sequence 275 BP; 86 A; 53 C; 74 G; 62 T; 0 other; tggaatccag attcatatct aggaccagag tcaacgtgaa gtacaagacg gatggtcgaa 60 ctacgggacc tggcacaact gagatgagca caaaggtgct gtgcagtata gtgaagacaa 120 atgatgccag gccaatgcat gaaaagcgac tgcatggtcg cagaagaacg ttgagctgag 180 gagtagtgaa gctaacgatc taatcatact ttcttttacc tttcagtgga ctggtgaaag 240 tgttcctagg gcatacggat caagtgcatt atcca 275 // ID Gypsy-19_PIT-LTR repbase; DNA; PLN; 802 BP. XX AC AATU01001819; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-19_PIT_; KW Gypsy-19_PIT-I; Gypsy-19_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-802 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001819; Positions 85115 84314. XX SQ Sequence 802 BP; 215 A; 188 C; 276 G; 123 T; 0 other; tgtaaggaga cgcgatcacg tacgggtgca gtgcgacaac agagtgacga agaacggagt 60 ggcgtgcgcg aaggcaggca gctgccggat cactgtagga cgaacaatga agagaacgac 120 gacagctggt tgaagtaccg cgggccagac ccgcgatctg ttgggtagac acaatggtgt 180 acggccaacg gaagacagag aacggaatct ggcgcggaga ggacagtacg aaatctgcgg 240 cgtagagcag aggacgaatt ctgcggtgaa gagcgcggaa cgataaacag ttgcggcgac 300 gggggaccga gtgcccagta gccgaccaga cgagagacta gtgagtgact tgacccgtga 360 gtcaagcgcg cattggacca aacgaaacga acgccagcga gcgacttgac ccgagcgtcg 420 agcgcgagtt ggaccagacg agcgaacgga cggacttggt gtaccgcggc aacagagttt 480 ggtgagtgag cggcaaaagg agctgtgtct cccctgtgaa cggcgcatat agcggtacct 540 cgagggtgcg ccgagcttga gtgtctagta gcaggacaac tggccattcg ggcgcaacgg 600 tgtcaacaca ctgagtcgta gggcattagg taggacgatt gcatttgatt gagtaattga 660 aacgaaataa agtaggtgtt cctgtctaag aggcagacac cggcgcggag cacgaataga 720 ctccgtcggc catccggact ttggacgtaa tcagcgctgg gcgaccaacc ccggcgtgca 780 ggggagccga agacacgtta ca 802 // ID Gypsy-22_PSo-LTR repbase; DNA; PLN; 345 BP. XX AC AAQY01000762; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-22_PSo_; KW Gypsy-22_PSo-I; Gypsy-22_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-345 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000762; Positions 3172 3516. XX SQ Sequence 345 BP; 91 A; 104 C; 76 G; 74 T; 0 other; tgtcacggaa ctaaactgtt ccgtgaaggt aagtttgtag aagaaagcaa cggacgaccc 60 taaaggcaaa gatcgtgaag ccactcgagc cgagatctcg aaaccactcg agaagatctc 120 gcgaccctcg gtagtaggta gagctagcga gcccccacaa tacacacttt catattttcc 180 ctctattgca caagtcctgc caacaacgtc tacaagctca gtatcgcctg gcggagtccc 240 tgtcaaagtc ttccgaccgt acccttctcc tacgcttcct ccgaccgcaa cgtggtgccc 300 ctaaacgaag tcctgtctgg acgggggttc accatatttg caaca 345 // ID Gypsy-44_PIT-LTR repbase; DNA; PLN; 357 BP. XX AC AATU01003867; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-44_PIT_; KW Gypsy-44_PIT-I; Gypsy-44_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-357 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003867; Positions 19761 19405. XX SQ Sequence 357 BP; 89 A; 103 C; 84 G; 81 T; 0 other; tggtgctgac gacgttctgt caagctgaag ctcgctgaag gtgacagcgt gctgtcacct 60 cacttcttca agcagcacat gcattcactc cactcgagca tcatcagctg atgctccggc 120 gccaactgcc atggtcgcca ctacatgttg tgtatgacga cggcaagaac ttcaagcctg 180 cgtgccatgg acacgcaagc tgctgatgct taaggaagga gcgagcatca ccatgaacat 240 catcggtggt cctgctacaa aggaccgcag tggacgacta aggagtctcc taggagacca 300 gcagtaagtt ctaactcttt aatatatctc actttccaat tcaccttccc gagccca 357 // ID Copia-38_PIT-I repbase; DNA; PLN; 4654 BP. XX AC AATU01000943; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-38_PIT_; KW Copia-38_PIT-LTR; Copia-38_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4654 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000943; Positions 64043 59390. XX CC Positions [2028-2513] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 867..3452 FT /product="Copia-38_PIT-I_2p" FT /translation="MNDVGPHLIAACPKMKYDLSLGVKRRDIWSRGKQVGT FT CWSKPQGKSKSAAKIKKPARKQVPVEDCLPKPVNACETVQPAAPQTSPPVS FT PPTSMLTPGYEDMHGIEPMDTDESMSFFDTPVNAGQVTEAPAGDGQIADMT FT AGVNKMAVDLEQAVRSMYPFLLDSETFLTNDFWVLDSGCEFGSTSEESRFV FT EKRPDNGYMFTFAEGSKHTNTHIGTVKLYLHGPGGIRPFQFTNIALVPHAK FT SNILSEYWLQRGGYQIIGSASGDFKFVLYKNQLVFVAKAINGAYYIQSKTV FT KERQAFCHAVKTQPCKPLALPGVGKVEAALKEWHVKLGHLNKEQVITMLTK FT PVVAGMPTLKASDLRQVLFFCTTCTEMKKKRMSYRKGLKRCKADQHDTHGH FT KWSDEDNGSLWNRGHFLSIIDDNTSWRWTYVLGNKKEVFENVRELLLQLER FT EGKFTIRRIRSDGRTEFVNSAFKDFCKEKGIIFQTSNTYSPEENGAAERDH FT QSKLDRVRCALKDADMEHRWWPEALIYMTYAQNRTPMSRLGGKNPYEMVHG FT KPPNISGLPVWGSICFVHIPTALRKDKKLSARALKCRFLGVSEEAKGYRLW FT DVYNNKHIVARDVLFDTTNVANIVNRAFDQSNPEVTTQFALREIPGGMREQ FT QTASEQETAEAVGVAPPTVPPIEPAEAVGVSKRKRSAGLVEASQPVARPRR FT ETKRPKRFQDYQCFQAILDKANAEEILENKVSIPKTIREALRGPHREQWKQ FT ALELEYDSLIENGTWRLVPLPPGRKALPCHWVLVVKYNADGTIERFKARLV FT AQGNYQEFGVDCDEVYAPVARFMSLRLVLAIGTILDCHIHQMDVHTAFLTV FT PWKENRKST" FT CDS 3428..4642 FT /product="Copia-38_PIT-I_1p" FT /translation="MEGEQKIYMRQPQGFAKRGQEQLVCELLKSIYGLKQA FT PRFWYRVLHTFLTSMGFARCHKEICIYVQKVGDEWLIVVVYVDDLTITFRD FT MGLINRLKVELSKRFKMKDLGDIHYILKMEVRRNRKQRVMMISQRKYIAEL FT IAKYNMVNSSPVLTPQVPGLTLEAETKMNAKQIAAQPFDYRGIVGSLQYLV FT RGTRPDIANAVRELSKFLSCYNRTHWEAARRVLKYLKGTSTYGLLLDGKES FT DVTYEVYTHASFACQPKERKSVTGYVIKMTGTCVSWCSSKQVGVSLSTAEA FT ELIALSEDAKESEWLWHLLGEMGFPQKGPVQVWCDSNAAISIVRNPEHHEA FT NKHIEKRLLFTRDLVELGHLKITYCATTEMAADILTKALSTKQFLKLRHKL FT GVMDLELTPCT" XX SQ Sequence 4654 BP; 1345 A; 1093 C; 1238 G; 978 T; 0 other; tttcaagtaa gatggacaag acttctgaga ccaacatgag caggctgcag ttccacggga 60 acaaggcgca tttcgctgga tggaaggaca agttcgtgga tcatctggct gctaagagcg 120 acgccatcac gattctcgag cttcagcaaa aacgggcgaa tccgatgacg cgctatgagg 180 atttgctcaa atcccagccg tcaatcccgc ctctcgaagg agagcgtacg gcggaccgcg 240 tgcaggccca cgagctgcaa gaggcgctgc tcaggggaca gaaatcccac atcaaggatc 300 ttctgaacta gacgctgcca agaaacttcg ctgacgaacg gctcatgcgt atgccggtct 360 atgtgatctg gaaagccgtt gggaaacgtt atggtctcaa cactgcgtcc ggcgtggtag 420 agctggtgca gaatttcgag agagtggcca actcggactt caagaatatt tcgcatctgt 480 ttcagcagct caaggctgct cgcgagcaag cgaacaggaa cagcatcgag gcactgggtg 540 aaaagatcat atcgtcccat ctcatgctca tcaaagtcct ggctattctg cctggtcatc 600 tgtggggctt cggaattgaa tttcaatcag gagacttcac ggttgagaag gtggagcaaa 660 aactggtcgc tatcttcggt accaagagca aggcgcaaat tatggcgctg ggcaagggca 720 ttgcggtgaa ccacgtgtaa gccgggacag ccaaacctaa gccaagtgca ctgggcaagc 780 gaaaggccgc acccgagccc atcaacgatc tgcactacaa cgtggggcat aaatcgtgcc 840 actactgtgc tggggagttc aacgacatga atgatgtcgg tcctcatctg attgctgcct 900 gccctaaaat gaagtacgac ttgagcctgg gcgtcaagcg tagggacatc tggagccgcg 960 gcaaacaagt gggcacttgc tggtcgaagc cgcaaggaaa gagcaagtcg gctgccaaga 1020 tcaagaaacc agcccgcaag caggtcccgg ttgaggactg tctaccgaaa ccggtgaatg 1080 cgtgcgagac ggtgcagcca gccgctccac aaacttcacc gcctgtcagc ccgccaacgt 1140 caatgttgac acccggctac gaagatatgc acggcatcga gccaatggac acggacgagt 1200 ccatgtcgtt cttcgacacg cctgtcaacg cgggacaagt cacggaagca ccagccggtg 1260 atgggcagat cgccgacatg acggcaggtg tcaacaagat ggcagttgac ttggaacaag 1320 cggtaagatc catgtatcct tttctgcttg acagtgaaac atttctgacc aatgactttt 1380 gggtactcga ttcaggatgc gagttcgggt caaccagtga ggagtcccgg ttcgtggaga 1440 agagacccga caacggttac atgtttacat ttgcagaagg gtctaagcat acaaatacac 1500 acattggcac tgtgaaactt tatttgcatg gtccgggagg tatccgaccg tttcagttta 1560 caaacattgc gcttgtaccg catgctaagt cgaatattct tagcgaatac tggctacaaa 1620 ggggagggta tcagattata gggtcagcca gtggcgactt taaatttgtc ctctataaga 1680 accaattggt ttttgtggcc aaggcaatta acggggcgta ttatatacaa tccaaaacag 1740 taaaagaacg acaagcgttc tgccatgcgg tgaaaacgca accatgcaag ccattggcac 1800 tgccaggagt gggcaaagta gaggctgcac taaaggaatg gcacgtaaag ttgggacact 1860 tgaacaaaga gcaggtgatc acaatgttga ccaaaccagt ggtagccggt atgcccacac 1920 taaaggcatc tgatctaagg caagtgttat tcttctgtac aacatgtacg gaaatgaaga 1980 agaaacggat gtcgtatcgc aaagggctca agagatgcaa agccgatcag cacgatacac 2040 atggacacaa atggtccgat gaagacaatg ggagtctttg gaaccgtggg cacttcttga 2100 gcatcattga tgacaacacg tcatggcgtt ggacatacgt tctggggaac aagaaagaag 2160 tgttcgagaa tgtccgagag ctcctgctgc aacttgaacg tgaaggaaag ttcacaatca 2220 ggaggattcg atccgatggt agaaccgagt tcgtgaactc agcgttcaaa gacttctgca 2280 aggaaaaggg catcatcttt cagacatcaa atacatacag cccagaagaa aacggggcgg 2340 cagagcggga tcaccaaagc aaactagaca gagttcgctg tgcgctcaaa gatgctgaca 2400 tggagcatag atggtggcca gaagccttga tctatatgac ctatgctcaa aaccgtaccc 2460 caatgagtcg gttgggtgga aagaatccat acgagatggt gcacgggaaa ccacccaaca 2520 ttagtggctt acctgtgtgg ggtagtatct gctttgtcca cataccgact gcacttcgca 2580 aagacaagaa actgtctgct agagcgctta agtgccggtt cctgggtgtc tcagaagaag 2640 ctaagggcta cagactatgg gatgtatata acaacaaaca catcgttgct cgagatgtgc 2700 tgtttgacac aaccaatgta gcaaacattg tcaatcgagc ctttgaccag tccaacccgg 2760 aggtcacaac tcaatttgct ctgcgagaga tacccggagg aatgcgagaa cagcagactg 2820 cttctgagca ggagactgct gaagcagtgg gagttgcacc tcctactgtg cctccaattg 2880 agcccgctga agcagtggga gtatccaaaa gaaaacggag cgcagggtta gtggaagcgt 2940 cacagcctgt agcgcgaccc cgtcgagaga ccaaacgacc aaaacggttc caggactatc 3000 agtgcttcca ggcaatcctg gacaaagcta acgcggaaga gatcctagaa aacaaagttt 3060 ccataccaaa aactatcaga gaagctctgc gtggacccca tagggagcaa tggaaacagg 3120 ccctagagtt agagtacgac tctctcattg agaacggaac ctggagattg gtaccactac 3180 cgcctggccg aaaggctcta ccatgtcact gggtgctcgt ggtgaaatac aacgctgacg 3240 gtactatcga gcgattcaaa gcacgactcg ttgctcaagg taactaccaa gaatttggag 3300 ttgactgtga cgaggtatat gcaccggtag caaggtttat gtccctacgc ttggtgttgg 3360 ccattgggac tatactggac tgtcatatcc atcaaatgga tgtccacact gcgttcctaa 3420 cggtaccatg gaaggagaac agaaaatcta catgagacaa cctcaagggt ttgcgaagcg 3480 aggccaagag cagctggtct gtgaacttct aaagagcatc tatgggctaa agcaggcccc 3540 tcgcttctgg tatagagttc ttcatacctt cttgacatcg atggggtttg ctcgttgcca 3600 caaagagatt tgtatctacg tgcaaaaagt gggagatgaa tggcttattg tcgtggtata 3660 tgtcgatgac ctcactatta cgtttcgtga catggggctc atcaaccgac tgaaagtcga 3720 gctgtcaaaa cggttcaaaa tgaaagatct gggagacatt cactacatcc tcaagatgga 3780 agtgcgacgc aacagaaagc agcgagtgat gatgatctca caacgcaagt atatcgctga 3840 gctgatagct aagtacaaca tggtgaacag ctcacctgta ctaaccccac aagtaccagg 3900 gctgacgcta gaagctgaga cgaagatgaa tgctaagcaa atagcagcgc agcctttcga 3960 ctacagaggc atagttggat cactccaata cctggttcgt ggaacacgac ctgacattgc 4020 caacgcggtg agagaattaa gcaagttcct atcgtgctac aatcgtacac actgggaagc 4080 ggctagacga gtcctcaaat acttgaaagg gacgtcgacg tacggtctac tactcgatgg 4140 aaaagagagt gacgtgactt atgaagtgta cacacacgcg agcttcgcgt gtcagccaaa 4200 agaacgcaaa tcagtcaccg gctatgtgat caaaatgact ggaacctgcg tgtcgtggtg 4260 tagtagcaag caagtaggtg tttctctctc tactgctgag gcagaactca tcgcactaag 4320 cgaagatgcc aaggagagcg agtggctatg gcatcttcta ggagaaatgg gatttccaca 4380 aaagggtccg gtgcaagtct ggtgcgacag caatgctgcc atcagcatcg tcagaaaccc 4440 agaacaccac gaagcaaaca agcacatcga aaaacggctt ctatttacga gagatctggt 4500 agaacttggt catctcaaga taacctattg tgccacaaca gagatggctg ccgatattct 4560 gacaaaggcg ttgtcaacca aacaattcct aaagctgagg cataagctag gagtgatgga 4620 tctagagctt accccttgta cttagtggga gtat 4654 // ID JORDAN repbase; DNA; PLN; 1595 BP. XX AC L20411; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Volvox carteri transposon Jordan. XX KW Transposable Element; JORDAN. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-1595 RA Miller M.S., Kirk L.D. and Schmitt R.; RT "Jordan, an active Volvox transposable element similar to higher RT plant transposons."; RL Plant Cell 5(9), 1125-1138 (1993). XX DR GenBank; L20411; Positions 1 1595. XX SQ Sequence 1595 BP; 409 A; 362 C; 393 G; 431 T; 0 other; ccctatggca taaacatgcc ggttaccgac cgtttggggc ccattaaccc aaccggccgg 60 ttgaatggcg ttaacggccc ggttgggtta acggtcggtt gggttaacgg ccagttgggt 120 taacgatcag ttgggttaac ggtcggttgg gttaatgagc cccaaacggt cggtaaccgg 180 catgtttatg ccatagggag tatcccggta gcgcgggaag catcgtccgc caatattaat 240 taaaggcctc taacgctgca ggaaaatttt agtagaagat ttagaactat gtatttattt 300 agttttagcg tttgttcccg ctttgagggc gtgaaatgcc gtgtcattgt ccctaataag 360 tcattgtccc ggcatttcaa ttgtcgccca taagcatgaa ccaggccacc aactcacaag 420 cttacatgca acaactaaaa ccaggcaata ctagctacgc aagctatgct aggacaaact 480 tttgagacaa ggcatcctcc aattggcacg cggtaaattg acttagattg tttgccctgg 540 caaacttatg tactccaaac tcatccactg gacgatgctg gctgtatttc ttgcgtgggc 600 gatcttgtcg ccgacgggcg atgttgtcca gggcgttccg gtcaaactcg taggcgccga 660 cctcattacc gttgtccatg gacattgtgt tggaaggata cgttaaggtt cagataaaat 720 gaagaaatga agaagcgctc cttcatagta tggagatggt agaatcttca agcaactttt 780 gaacgaccag ggagagttgc tgataggcga atttgtatga agctataaaa ttcctttatt 840 ccttcaaggt aagtgaatgc ttatgtattc gtctgttagt agcgtgaagc tttgaacact 900 ctttgtacgg cagattcggc acaatgtttt gcctcattgc gatgttgcct gaaaattttg 960 aacagaaggg atcactgctc atgctggtgc agcaagacat gtaaggagat ggcctggtca 1020 caatccagca gtcatatatc gacaatctca agctatgaca acttgttaca tgtgtctgta 1080 ataaaaaagg gactttgcga tggtgtgggg agctctttga gtagtgggac tgtggaaatc 1140 cagtttgttt cgcccgtaac aagtttgtta tgggcgaaac aacgtccctc tgaaacgttt 1200 ggatatgcct atgcaacaca tttcctcaat ttcatgaact gcaagtattc taatccaaca 1260 tcaccccaat ctcagtgtaa actagtctcc aaatgtgcct gcacaagact gtcacccctg 1320 tcacccggca ttcacattgc cttaacctcc tcaagcttgt cgggttgtga cacgtgggca 1380 tgaaccttgt gacaatgggc attgtcacaa agaaactggt tgcaatcaga aatgcatttt 1440 tgctcatgcc aggttaccga catcggttac cgattactgg ggacggttaa cggataacgg 1500 ttcgcccggt aatcctaccg accggttacc catctcgtta actggacccg ttaggtcgga 1560 accgggccgg aaccggcctg gagtatgcca ttggg 1595 // ID Gypsy-11_PPa-I repbase; DNA; PLN; 5270 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Internal portion of a Gypsy-type LTR retrotransposon - consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy-11_PPa-I; Gypsy-11_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5270 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 971-971 (2010). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(213..1217,1187..2347,2332..2982,2925..4709) FT /product="Gypsy-11_PPa-I_1p" FT /translation="MAELVEMKSAMAQMQEQLRELMLAMHQLNLPPQGATR FT LAGSEDIEMIGAASTSAPNHVLSPMVERPSSIREPRIALPEKFDGTRSKFR FT GFINQVQLVIELQPQSYPTPGSQVRFIGTLLSSSALSWFSSFLERRDPILD FT NLEAFLAEFRSMYGEHDAIRVATNKIRILRQGNRSVTLYASQFRQLATDIK FT WDDAALISQFLYGLQYEVKKLMLNLPDPQTLSQAIDFAVKCDNRLFEFRSE FT NRTSGPQRYYNSMATPTSLQHIHSEVEDMQIDAVHFKPLTEQEKTRRRQEG FT LCLYCGEPKHTAQHCPKKRRNHKMRSMAVKEDNMSENEFVQLQYVGKRVCP FT ATIGTVRLEPCTTPSKGPILSSEPSPCFTINVILGPKNYKASALLDSGASA FT CFLDEEFAKRHSISLVKKTKPVHVEVIDGRPLSSGDVTHETLPIEVAINGH FT NSFVVFNIIRSPSNPVILGLSWLEKYNPQIDWISRNLNFSKSITKSVVNQV FT ESHKSSTIKPVFIGARAFLHAAKEGSPFVIYATPISNGEKTSSGIPSQYQE FT FQDVFEKKNADTLPEHRPYDCSIDLQEGAQPPFGPIYSLSQNELAELKEYI FT EENLAKNFIRHSKSPAGAPILFVKKKDGSLRMCVDYRGLNKITIKNRYPLP FT LISGLLDQLNQAKIYTKIDLRGAYNLVRIKEGDEWKTAFRTRYGHFEYNVM FT PFGLTNAPAAFQHLMNDVFWSFCFLEFLDDFVVCYLDDILIYSKNTEEHEL FT HVRHVLQKLRDAGLYAKIEKCVFHTTQVDFLGYIISNDGLMMDPKKVQTII FT DWKIPKTVRDVQCFLGFANYYRIFIKDFSRVAAPLTRLTCKDKLQWNQEAE FT VAFEALKTAFVSAPILYRVDFSKAFFMETDASDFALGAVLSQMGTDDKLHP FT VAFHSRKFSAAEINYEIHDKELLAIVDSFKNGIIIDPRQRTSCNRGFFQEW FT HHYLEGASSPVTVYTDHKNLEYFMSARVLNRRQARWSMSLSRFEFKITYRP FT EKQQGLSDALSRRSYLAPKEGDAAFDQQRTILLKPEHFHLRAIKSTLTVDS FT TFLKQVQSSMSSDPLVHDIKNNSSKSHDTSKFEFKNNLLYFEGRLYVPEGE FT ARLRVLQARHDFPAAGHFGYNKTLELISRDFWWPQMWKAVKDFVQSCDVCS FT RSKTPRHRPYGLLQPLPIPEQPWSSVSMDFITDLPISGSYDSIFVIVDRFT FT KMAHFVPCTKSITGEETAKLFLDNIYRYHGLPKDIISDRGTQFVSRFWRTL FT FKILKVDIKLSSAFHPQTDGQTERVNQVLEQYLRCTINYQQDDWTTLLPLA FT EFAYNNTVHSSTQQTPFFANYGYHPRLDTFDFSKVDNPAAKDLANHLSELH FT ATMKAQLKEAQERQKINADVYRKEQPXFNMGDKVWLLRRNIKTTRPCDKLD FT YRRLGPFSISAQINPVAYRLHLPESMKIHPVFHVSLLEPYKTVDIPRRRQV FT PPPPIEVDNNEEFEVEEVLDSRRRRNKLEYLVHWHGYDISECTWEPTKNLA FT NAAKXVEAFHRRHPSKSR" XX SQ Sequence 5270 BP; 1659 A; 1045 C; 1015 G; 1549 T; 2 other; gattgacaag agtacaccta caatatcaga gctttgtcta atcttgatta agagtggatt 60 accccttttt cttgataaga tataagcata ttagaagttg cggattaccc tcttctaaac 120 tgatattgtc cttagtattt tctttgttct caagtcctct cttctatttg tcttgagcga 180 tattagacat cttctctttt ctaagtgtta tcatggcaga acttgttgaa atgaagagtg 240 caatggcaca aatgcaagag caattgaggg agttaatgct tgcgatgcat caactcaatt 300 taccaccaca aggagcaaca agattggcag gaagtgaaga tatagaaatg attggagctg 360 cttcaacatc tgcaccaaat catgtccttt ctcctatggt ggaacgccct tcaagtatta 420 gagaaccaag aattgcccta cccgagaagt ttgatggcac cagatccaag tttcgaggat 480 ttatcaatca agtgcaactt gtgattgaac ttcaacccca aagctatcca actccaggat 540 cgcaagttag attcattggt acgcttcttt caagttcagc actatcgtgg ttttcatctt 600 ttcttgaacg acgagatcca atattggata atctggaggc ttttttggcg gagtttcgat 660 ccatgtatgg agaacatgat gcaattcgtg ttgcaaccaa taagatccgt attttacgac 720 aaggcaatcg atcagtaacg ttatatgctt cacaatttcg acaacttgca actgatatca 780 agtgggatga tgctgcactt attagccaat ttctctatgg attacaatat gaggtaaaaa 840 aattaatgct caacttacct gatcctcaaa cattgagtca agcaattgac tttgctgtga 900 agtgcgacaa tcgccttttt gaattccgat ctgagaaccg tacaagtgga cctcaacgtt 960 actataattc aatggcaaca ccaacatctc ttcaacacat acattcggaa gtagaggata 1020 tgcaaattga tgcggtacat ttcaaacctc ttactgagca agaaaagact cgtcgtcgtc 1080 aagaaggatt atgtttatat tgtggagaac ctaagcacac tgctcaacat tgtccaaaga 1140 aacgacgcaa tcacaaaatg aggagtatgg ctgtcaaaga agataatatg tcggaaaacg 1200 agtttgtcca gctacaatag ggaccgtgcg gctggaacct tgtacaacac ctagtaaagg 1260 tcctattctc tcctcagagc cctctccttg ttttacaata aatgttattt taggacctaa 1320 aaattacaaa gcctctgcct tgttagattc aggagcctca gcgtgttttt tagatgaaga 1380 atttgctaaa agacatagca tatctttagt aaagaaaact aaacctgttc atgtagaagt 1440 catagatggt cgtccattgt cttctggaga tgttactcat gaaacccttc ctatagaagt 1500 agcaattaat ggtcataata gctttgtagt atttaatata attagatctc cctctaatcc 1560 agtcatttta ggtttatcat ggttagaaaa atataaccct caaatagatt ggatttctcg 1620 taatcttaat ttttctaaaa gtataactaa gagtgtagtt aatcaagtag aaagtcataa 1680 gtctagtaca attaaacccg tatttatagg tgcaagagct ttcttgcatg ctgcaaaaga 1740 aggatcacct tttgttattt atgccacacc tatttctaat ggtgaaaaga cttcaagtgg 1800 cattccaagc caatatcaag aatttcaaga tgtatttgaa aaaaagaatg cagatactct 1860 tccggaacat cgtccctatg attgctcaat tgaccttcaa gaaggagcac aaccaccatt 1920 tggaccaatc tacagtttat cacaaaatga gttggctgaa ctcaaggagt atattgaaga 1980 aaatttagcc aagaacttca tacgccattc taaatctcca gcaggagctc caattctatt 2040 tgtgaagaaa aaagatggat cattgcggat gtgtgttgat tatcgaggac tcaacaagat 2100 caccatcaag aataggtatc cactaccttt gatatcagga cttcttgatc agctgaatca 2160 agctaagatc tatacaaaaa tagatctacg aggagcatac aatctagtac gcatcaaaga 2220 aggagatgaa tggaagactg cgtttcgaac taggtatgga cattttgaat acaatgtcat 2280 gccttttgga ctcacaaatg caccagcagc ttttcaacat ctaatgaatg atgttttttg 2340 gagtttttag atgattttgt tgtctgttat ctagacgaca tcttgatcta ttctaagaat 2400 acagaagaac atgaacttca tgttcgtcat gtgttacaaa aactaagaga tgcaggactc 2460 tatgccaaga tagaaaagtg tgtattccac actactcaag ttgacttctt aggatacatc 2520 atttcaaatg atggacttat gatggatcct aagaaagttc aaactatcat agattggaag 2580 atcccaaaaa cggtaagaga tgtccaatgc tttttgggat ttgccaacta ctatcggatc 2640 ttcatcaaag acttctctcg agttgcagct ccacttacac gtttgacttg taaagacaaa 2700 cttcaatgga atcaagaagc ggaagtagca tttgaagctt tgaagacagc gtttgtttct 2760 gcaccaatct tgtatcgtgt tgatttttcc aaggcatttt ttatggaaac agatgcatca 2820 gactttgctt tgggtgcagt attgtcacaa atgggaacag atgacaaact tcatccagta 2880 gcttttcatt caagaaaatt ctcagcagcc gagatcaatt atgagatcca cgacaaagaa 2940 cttcttgcaa tcgtggattc tttcaagaat ggcatcatta tctagaaggc gcttctagtc 3000 cagtcaccgt gtatacagat cacaagaacc tcgagtattt tatgtcagca cgtgttttga 3060 atcgtcgtca agctcgttgg agcatgtctt tatcaagatt cgagttcaag atcacttatc 3120 gaccagaaaa acaacaaggt ttgtcagatg ccctttctag acgttcttat cttgcaccaa 3180 aagaaggaga tgcagctttt gatcaacaaa gaacaattct cttgaagccg gagcattttc 3240 atcttcgagc aataaaatca acattgactg ttgattcaac ttttctcaag caagtccagt 3300 caagtatgtc ttctgaccct cttgttcatg atatcaagaa taattcttct aagtctcatg 3360 atacttctaa gtttgagttc aagaacaacc tactctattt tgaaggacgc ctatatgttc 3420 cagaaggaga agcacgttta cgtgttcttc aagctcgtca tgactttcca gcagcaggac 3480 attttggata caataagact ttggagctaa tatctaggga tttttggtgg ccacaaatgt 3540 ggaaggcagt caaagatttt gtacaatcat gtgatgtttg ctcaagatca aaaactcctc 3600 gtcatcgacc ttatggactt cttcagccat tacccattcc agaacaacca tggtcttctg 3660 tttctatgga tttcatcacg gatcttccaa tctcaggttc ttatgactct atattcgtga 3720 tagtagatcg ttttaccaag atggcacatt ttgtaccatg tacaaaatct atcacaggtg 3780 aagaaacagc taagctcttt cttgacaata tctatcgcta tcatggatta cccaaggata 3840 ttatatcaga taggggaact caatttgtat caagattttg gaggactctt ttcaagattc 3900 taaaagtgga tataaaacta tcttcggctt tccatcctca aactgatgga caaacagagc 3960 gtgttaatca agttttggag cagtatttaa gatgtaccat caactaccaa caagatgatt 4020 ggacaactct tttgccattg gcagagtttg cttataataa tacggtacat tcttctacac 4080 aacaaacacc tttctttgcc aattatggtt atcatccacg acttgatact tttgactttt 4140 caaaagttga taatcctgcg gcaaaagatt tggcaaatca tttgtcagag ctacatgcaa 4200 caatgaaggc gcagttaaaa gaagctcaag aacgacaaaa gatcaatgcg gatgtctatc 4260 gaaaggaaca accacmattc aacatgggtg ataaggtatg gctacttcgt cgcaatatca 4320 agaccactcg tccttgtgac aagttggact atcgaaggct tggaccattt tctatttctg 4380 cacaaatcaa tccagttgca tatcgtttac atctaccgga gtcaatgaag atccatccag 4440 tattccacgt gtctcttctt gaaccataca agacagtgga cataccaaga agaagacaag 4500 ttccacctcc tcctatagaa gtggacaata atgaagagtt tgaagtggaa gaagtcttag 4560 attcaaggcg gcgccgaaat aagttggaat atcttgtcca ttggcacgga tatgatatta 4620 gtgaatgcac atgggagcca acaaagaatc ttgcaaatgc agcaaaggmg gtggaggctt 4680 ttcatcgacg acatccatca aaatcaagat gaaaaccttc tttataaaag aaacaagatc 4740 taggcaagat aacattctac tttcaatcct tgtttgtagc ttctttgtag ttgtgacgct 4800 caggagatgg agaaccaaca accagcagat tcaactcaag agccttcatt tgctgaccta 4860 ccggatgaga cattacgatt gtcacaacct tcaagacgac gcaatcgaga tgaagatctt 4920 caagaacgac atgttcttcc tcgaatagat ggcgagatac aacgcgtttg gtatcacgac 4980 cttggaaggg actcccgatg tttggtgatt ttgctagagg taggaacaac tcctgatggt 5040 gttccaaata ttttattcga aggaagttat gaaggcctca acaatgatca aataactggg 5100 tggtcttccc gccctggtat gggacactat cgatggttga gaggccctat caatcatctt 5160 cgaagagaac aaagatcaga gtatgtggcg aatacaattc gtcgcatcat agatttcctc 5220 aacatatgat gaccgctcct cgtggaactc gtccctagaa gggggggtaa 5270 // ID Gypsy-1-I_PI repbase; DNA; PLN; 6581 BP. XX AC . XX DT 29-APR-2009 (Rel. 14.04, Created) DT 29-APR-2009 (Rel. 14.04, Last updated, Version 1) XX DE An internal portion of the LTR retrotransposon - a consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; Gypsy superfamily; Gypsy-1-I_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6581 RA Bao W. and Jurka J.; RT "Gypsy LTR retrotransposons from Phytophthora infestans."; RL Repbase Reports 9(4), 729-729 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 45..860 FT /product="Gypsy-1-I_PI_1p" FT /translation="MPTNAQLQAEIDRLNQAMAERTRVPSNLPKFTGKRGE FT DVREWLFQVENACRINGIAIDDANPRIPGIAGSAMEKPASGWFLHWASTTR FT VEEHTWGIFREHVLQHFEASNYQSVLRDKLQRLKQTADIETYNGEYSALIF FT RVEGMSVLDQVLFYANGLKPRTRSYVKLENPETLSNAMDLAVKFEVTHFVE FT DASERKVRHEKTKTSNEQPQDNKKTFKGKPFRGKGRFKPSSNLKSKETRTC FT HFCNKPGHIKANCFAWKKEQGKQGNEKPRQ*" FT CDS 728..4906 FT /product="Gypsy-1-I_PI_2p" FT /translation="TELEFEEQGDSYLPLLQQTWPHQSQLLCVEEGAREAG FT KREATTVKEGPVVEEKVTGAVKFDNVSLNVLCENPLVYKSRPLFAVGGEIS FT VAGKMKKTSKMLLDCGATTIYVSKRWVEEHQLKTTKFSDKNIRVKLGDNQI FT VEAQLEVLPLRILVAGIDEAYECVAVVYAIPEEFDCILGIPFFEDMQPQID FT WRRRRIEGTIERTLRWERAGETCGPIEEGGPVIASGLRRSVGAKGLSAKRP FT DSCRGAALETGVKSAVNPVHDSEQSETPRVACERLEDASAGKGSADEDERK FT SSRRDGTAAGSSDTRGRDSVVEKMFTMGITDEAGIQTKFITRKKLRKFLRI FT KTKSIEEPDFMLVLTNEMIKNVARSLERRDQPDNVGTAKAQRYLETDWQSF FT QANPAFDLLTKYKDTVFQPELPEGLPEKREIEHRIDVKDPNLAMYRQQWRQ FT SPEQQREIVLWVIDMVKKKLIRPSISPHAAPTFCVRKPVGWRIVHDYRYLN FT SNTIRQSIPMTRKEDILDAMAGGYWFSTMDLMSAYYQVRMRAEDIKFTAFQ FT APNGLWEYLVLPMGVCNAPATMHRLTSKLFRDLENTKSFYDDIYIFTKTQK FT IEDHLEALRKTLDILRDNKLYVKLSKCVFCADEIPCLGDFVGRNGVRMDPD FT KVQTIKDWPIPRTQEELHSFLGLTGYVQRFCPDYAKLTASMFTLLKKKSKR FT NAKIRFDEEQSKNFKELKKRLCNPPVLHLPDFNQPMHLRTDASKFAVGGVL FT FQVVDGVELPIAYTSRKMKSAELNYPTQQQELLAIVHALAAFRIYCLDKPP FT IVETDHKSLEGLFTQKMANRRLARWYDILAEYQPTFSYLPGAKNGIADALS FT RRPDLQPETKYFHDLSVTSFNDASFSLAVSEVTTDSELIAKIKKAYKRDRE FT AKAIFTAIQRRADSQQAKARRQQKKQYRCYSEDNGLLWYQTPSDDSPRIVV FT PNDVKLRQVVISECHDSNYGGHPGSERTYLTLARRWYWTKMLKSIQSYIAD FT CEPCRRNKPRLTKPPGLLEPLRVPDERWRSISMDFITDLPRTKREVDSIWV FT VVDRLTKRCHFVPTTKKVDAEGVARLFIDHIWKLHGMPTSIVSDRDRKFVS FT TFWQHVFKSIGTTLKMTVAHRAQGDGQTERMNRTLEEYLRCFVGPVQDDWD FT IHLANAEFAVNSTVNSSIKMAPFEADLGYVPLNPLQLAAENRGKVPTSRRG FT AEFNERQAALLRRCQEALAEAQERMRDVYDRNREEQVFEVGDRVYLSTKHL FT DRKHTGLPNSSKLGPKWIGPYTVVKRIHNHAYELNIQAGNKLHPVFNTGSL FT KPYKDATRMSRPHDVVLADGTVGQLIQRLLGKRTHKQRTQFLVEWVGEEKP FT TWEPVENLSQVPDLIGDFEASRRRKRRRR*" FT CDS 6412..4967 FT /product="Gypsy-1-I_PI_3p" FT /translation="MASSRPSASSRDLLVGLQSTAGLRATKSRLARASLAG FT PSLGTATNRQATAQSASPSPPPSPPLPSPPSSPQLPSPPSPSSPVGSSAAS FT PASAPSAVSPPPALNTAPLSPPDDASVASDVSGVSLLNRLKELHCGPLFGS FT SDEEEDEGGSYGPHAARPPSSTPSVSGLFDDDSDEETVPAGTLNRLKRSVD FT SGDWHPYALPSAPAKHPANGRVNHYDPAAPWDYSVPVNIEQLHDVRGESPH FT RCFLVEWQISPLQLSWVWEEQLDQRFARRMDQVMQWRDDLCPGAFAYYYKK FT HFARRDQASPAGGCFMDAFRAALYHLGDTGLASTATALWVDFVRDHPSTVD FT GVSRAEATEFFRVLQRNDFPLDYDLLFQSPLDASYTNVERFQTFVQTLREG FT VYLTSIGDGLVGHCVAVLAKGPDTAVSVLDGVELPVTPEPLTNLAYLDKVK FT WMGLMKLNPGYRCRRGKRKSRPNRKKARREKKQQKL*" XX SQ Sequence 6581 BP; 1776 A; 1662 C; 1867 G; 1276 T; 0 other; ctggtagcac ttgttggtcc cagcaacctg acaacaaaga gcccatgccg acgaacgcgc 60 agcttcaagc cgagatcgac cggctgaatc aagcgatggc ggaacgcaca cgagtgccca 120 gcaacctgcc caagttcacc ggcaagaggg gggaagacgt gcgcgaatgg ctgttccagg 180 tcgagaacgc ctgccgcatt aacggaatcg caatcgacga cgcgaaccca cgaataccag 240 gaatcgccgg gtcggcgatg gagaaaccgg cttcggggtg gttcctgcac tgggcttcga 300 cgacgcgagt ggaagagcac acgtggggga ttttccgtga gcatgtgctc caacacttcg 360 aggcgtcgaa ctaccagtca gtgctacgag ataagctcca gcgtctgaag cagacagcgg 420 atatcgagac gtacaacggt gaatactcag ccctcatctt tcgagtcgaa ggcatgagcg 480 tgcttgacca agtcctgttc tacgcaaacg gtctcaagcc tcgcacgcga agctacgtga 540 agctcgagaa tcctgagaca ctgagtaacg ccatggactt agctgtcaag tttgaggtga 600 ctcactttgt ggaggacgct agtgagcgca aggttcgtca tgagaagacg aagacctcta 660 atgagcaacc tcaagacaac aagaaaacgt tcaaaggaaa accattccga ggaaagggac 720 ggtttaaacc gagctcgaat ttgaagagca aggagactcg tacctgccac ttctgcaaca 780 aacctggcca catcaaagcc aactgctttg cgtggaagaa ggagcaaggg aagcagggaa 840 acgagaagcc acgacagtga aagagggtcc tgtcgtggaa gagaaagtaa ccggagcagt 900 taagtttgat aatgtcagcc ttaatgttct gtgtgaaaac cctctagtct acaagtcacg 960 tccactgttc gccgtcggcg gtgaaatcag tgtggctggc aagatgaaga aaacatcgaa 1020 gatgcttcta gactgtggtg caaccacgat ctacgtgtcg aagcggtggg tagaagaaca 1080 ccagctgaag acaacgaagt tcagcgacaa gaacattcga gtcaagctag gagacaatca 1140 gattgtggag gcccagctag aggtgctacc tctacgtatc cttgtcgccg gaatcgacga 1200 ggcgtatgaa tgcgtcgcag ttgtctacgc gatacctgaa gaatttgact gcatccttgg 1260 aatacctttc tttgaggaca tgcaaccaca gatcgactgg agacgtcgac gaatcgaagg 1320 aacaatagag agaactttgc gctgggaacg agcgggtgaa acctgtgggc caatcgagga 1380 aggcggaccg gtgattgcct ccgggcttcg gagatctgtc ggggcgaaag gcctgtcggc 1440 gaaaagaccc gattcctgtc gaggtgccgc gctggaaacg ggtgtgaagt ccgcggtcaa 1500 tcccgttcac gactcagagc agagtgagac cccacgagtt gcttgcgagc gactggaaga 1560 cgcgtcagct ggcaagggtt cagcagacga agacgagagg aagtcgtcga gacgcgacgg 1620 tactgctgct gggagcagcg ataccagggg aagagattcc gtcgtggaaa agatgttcac 1680 gatgggaatc acagatgaag ctggtataca aaccaagttc atcacgagaa agaaactgcg 1740 aaagttcctg agaatcaaga ccaagtcgat cgaagaacca gacttcatgt tggttctgac 1800 gaacgaaatg atcaaaaacg tcgctcgatc cttggagcgg cgagaccaac ccgacaatgt 1860 cggaactgca aaagctcaac gttatctgga gacagactgg caaagtttcc aggcaaaccc 1920 tgcctttgac ttgctgacga agtacaagga cacggtgttc caacctgaac tccctgaagg 1980 tcttccggag aagcgtgaaa tcgagcacag gatcgacgtg aaagatccca accttgcgat 2040 gtaccggcaa cagtggcgac agtcacctga gcaacaacgt gagatcgtgc tctgggttat 2100 agacatggtg aagaagaaac ttatccgacc aagcatcagc ccacacgcgg cgccaacctt 2160 ctgcgtccgg aaaccagttg ggtggcggat tgttcacgat tatcggtact tgaactctaa 2220 tacgatacgg cagagcatac cgatgacaag gaaagaagac atactggacg ccatggccgg 2280 agggtactgg ttttcaacga tggacttgat gtccgcgtat tatcaagttc gtatgcgtgc 2340 cgaagatatc aagttcacag cattccaggc gcccaacgga ctctgggagt acctggtact 2400 gccaatggga gtctgcaacg cgccagcgac gatgcatcga ttgacgtcga aactctttcg 2460 cgatctggag aacacgaagt cgttctacga cgacatctac atcttcacga agacacagaa 2520 gattgaagat cacttggagg ctctccgcaa aacattggac atcttgcgag acaacaagtt 2580 atacgtgaag ctgtccaagt gcgtcttctg tgccgacgag attccatgcc ttggagattt 2640 tgttgggaga aacggcgtgc ggatggatcc agataaggtg cagaccatca aggactggcc 2700 aattccaaga acgcaagagg agcttcacag cttcctcggc ttaactggat acgtccaacg 2760 attctgccca gactacgcga aactgacagc aagtatgttt actttgctca agaagaagtc 2820 caagcgcaat gcgaagattc gtttcgacga agagcagtcg aagaacttca aggagctgaa 2880 gaaacggctg tgcaatccac cagtgttgca cttgcccgat ttcaatcagc ctatgcattt 2940 gcgtacggat gctagcaagt ttgcagtcgg gggagtcctg ttccaggttg tcgatggtgt 3000 tgagctaccc attgcttaca ccagtagaaa gatgaaatct gcggaactca attacccgac 3060 gcagcagcaa gaacttctgg caattgttca cgcgctggca gctttccgta tttactgctt 3120 ggacaagcca ccaatcgtgg aaacggatca caagagtctt gaaggtctct ttactcaaaa 3180 gatggcgaac cgtcgtctcg cgcgctggta cgatatcctc gcggagtatc agccaacgtt 3240 ctcatacctt ccaggtgcga agaacggaat cgcagacgcg cttagccgaa gaccagactt 3300 gcaaccggag acgaagtact ttcatgactt gagtgtgacc agcttcaatg atgcgtcctt 3360 cagtttagca gtcagcgagg tgaccactga cagcgagttg atagccaaga tcaaaaaggc 3420 gtacaagaga gatcgagaag caaaagcgat ttttacagca atccagcggc gtgcagatag 3480 ccagcaggcg aaagccaggc gacaacagaa gaaacagtat cgctgctatt cggaagacaa 3540 cggtttgctg tggtaccaga ctccatccga cgatagtcca cgtatcgtag tgcccaacga 3600 tgtgaagttg aggcaggtgg tcatcagtga gtgtcacgac tccaactacg ggggacatcc 3660 gggatcggag cggacgtacc tgacactggc taggaggtgg tactggacca agatgttgaa 3720 gtcaatccaa tcgtacattg ccgactgtga gccttgtaga cggaacaaac cgaggctaac 3780 gaagccaccg ggactgctgg aaccattacg tgttcccgac gaacggtgga gatcgatttc 3840 gatggacttc atcactgact tgccacgaac aaaacgagaa gtagattcca tctgggtcgt 3900 cgtcgaccga ctgacaaagc gatgtcactt tgtaccgact acgaagaagg tagacgccga 3960 aggcgttgcc cggctcttca tcgaccatat ctggaaactt catggaatgc caacaagcat 4020 cgtgtccgac agagacagga agttcgtttc gacgttttgg cagcacgtct tcaaatcaat 4080 cggaacaacg ctcaagatga cagtagcaca tcgagctcaa ggagacggcc agacggagcg 4140 gatgaacagg acacttgagg aatatttgcg gtgcttcgtg ggccctgttc aagacgactg 4200 ggatatccat cttgccaatg ctgagttcgc agtgaattca accgtgaaca gtagtatcaa 4260 gatggcgcct ttcgaagctg atctcggata cgtcccacta aacccgcttc aacttgcggc 4320 ggagaatcgt ggcaaggtcc ccacaagtcg acgtggtgct gagttcaacg agcgacaagc 4380 agctcttctt cggcggtgtc aggaagcact ggcggaagcg caagagcgaa tgcgcgatgt 4440 gtacgaccga aaccgggagg agcaagtctt cgaagttggc gaccgagtgt acttgagtac 4500 gaaacactta gatcggaaac atacagggtt acccaactca agcaagcttg gtccgaagtg 4560 gataggtccc tatacggtgg tgaagaggat ccataatcac gcgtacgagc tcaacatcca 4620 agccggaaac aaacttcatc cagtcttcaa caccggatct ttgaagcctt acaaggacgc 4680 cactcggatg tcaaggcccc atgatgtcgt tctagccgat ggtacagttg gacaactcat 4740 ccaaaggctt ctcggtaaac gaactcacaa gcaacgaacc caatttcttg tggagtgggt 4800 gggtgaggag aaacctactt gggagccagt cgagaatctc tcacaggtcc cggatctcat 4860 tggagacttc gaagcatcca ggagaaggaa acggcgaaga agatgaacga caaaggcagg 4920 agtaaagggg gcccgagagc ctacatgtat tcccaaatta cattccctac aacttctgct 4980 gcttcttctc gcggcgagct ttctttcgat ttggcctgga ctttcgtttc ccgcggcggc 5040 aacgataccc tggattcagc ttcatcaatc ccatccattt gaccttgtcg agatacgcca 5100 agttggtcaa aggttccggg gtcaccggca gctcaacgcc atccagtacg gaaacagcag 5160 tgtctggacc cttcgcgaga acagcaacgc agtgtccgac gaggccatca ccaatactcg 5220 tgagatacac tccttcacgc agtgtttgga caaacgtctg gaaccgttcc acattcgtgt 5280 acgaagcatc aagtggactc tggaagagaa gatcgtaatc caacggaaaa tcgttgcgct 5340 gaagaacgcg aaagaattcc gtagcttccg cacgagaaac tccatcgaca gtgcttgggt 5400 gatcacgcac gaaatccacc catagcgcag tggccgtgga tgcaagacca gtatcaccaa 5460 ggtgataaag tgccgcgcgg aacgcgtcca tgaagcatcc tccagcagga gaagcctgat 5520 cacggcgcgc aaaatgcttc ttgtaataat aggcgaaggc acctggacac agatcgtcac 5580 gccattgcat cacttgatcc atgcgccgag cgaagcgttg gtcgagttgc tcttcccata 5640 cccagctcaa ctgaagcggg gaaatctgcc attccaccag gaagcagcga tgcggagatt 5700 caccgcgaac gtcgtgcagc tgctcaatat tgactggaac cgagtaatcc catggtgccg 5760 ccgggtcgta gtgattgaca cgaccattgg cggggtgctt cgccggagct gacggtaaag 5820 catacggatg ccagtcacca gagtcgacgc tgcgcttcaa gcgattaagg gtaccagcag 5880 gtacagtctc ctcatcgctg tcatcatcaa ataggccgct cactgaggga gtggaggatg 5940 gtggacgcgc cgcgtgcgga ccgtacgagc cgccctcgtc ttcttcttca tcggagctgc 6000 cgaagagcgg accacaatgc agttccttca agcggtttaa aagtgacacg ccagacacgt 6060 ctgacgccac cgaagcatcg tccggaggtg ataacggcgc ggtgttcagc gcaggcggcg 6120 gagaaactgc ggacggagca gaagcgggcg aggccgctga agacccaaca ggagacgaag 6180 gcgacggcgg cgacggtaac tgcggcgacg acggaggtga cggtagcgga ggtgacgggg 6240 gtggcgacgg tgaagcggac tgcgctgtag cctgacggtt tgtggccgtt cccagtgacg 6300 gcccggccaa agaggcgcgt gccagccgtg acttagtcgc acggagccca gcagtagact 6360 ggagccccac caagagatca cgagaggaag cagacgggcg tgatgaagcc atagtgaccg 6420 cctcgggttg gaacccactc aattccagtg aagccaggcc cgtaggcgaa gatgacaccg 6480 gttcgagcga gtccctgttg agacggtcga cttcgccgtc tgctgtgctt tttcgagaat 6540 gaaggctatg aagaggcggc ggttgccaga gggagggtga g 6581 // ID Copia-2_SMo-I repbase; DNA; PLN; 4287 BP. XX AC ADFJ01001872; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_SMo_; KW Copia-2_SMo-LTR; Copia-2_SMo-I. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-4287 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01001872; Positions 10745 15031. XX CC Positions [1623-2066] - Integrase core CC 'TTTTG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 63..4229 FT /product="Copia-2_SMo-I_1p" FT /translation="MASSSSSRDMEQFDGTNFLAWKEHAQFWFMRWGLWPV FT VSGSRKCLSKDDDDTDPYNEWKDLDARANGALGGGLGPLYSVHVNVEKSSA FT ENWKSICEIMGVDLQEDVDVILHRSELYSLEQQPHERVQDYITRLQRKVVE FT IRLLDPEATVTDQEFNAVLFKGLTTRAMKSYLRYIKKIPDITQRQIFAELV FT QHEKTVIGEGNAAEQDGIAMVTRGNQHGQAGRSSIFNRLGNKRSNSTEEKP FT ATKQEFNLKCGTCSKRGHLSRDCPVKKQRRETKLKAERGSSSSAAPRFKSR FT RRDEGDDEDSSAAANGLSWMTRGVEVDTTSRVLWLDSAATNHSTFDRELFL FT EMRKCTGQVRLTDNSLLAVEGVGTIEVRLPTGLVVPVKHVWYIPKAQHSLV FT SLGQMMEQGFNLEFCGDRVKITHPEVGHVASASKIGRLFRMDCEVCVPGKL FT LATMTVATASSSSGGAADIQTWHRRLGHVNHKTIQQLQRDHVVDGLAITSF FT SMPLCEPCIMGKQHRRAFNSGGSVRATSPLQLVHSDLCGPFQVMTQRKKRY FT FISFIDDATRYVAVKFLATKDEALLAFKAYKHEVENQLDLRIKVLRSDGGG FT EYVSVNFSDYCEKAGIQRQFTVPYTPELNGVAERFNRTVVELARTMIADAG FT LPPRFWDHAIATAVFVRNRVLTTAVKSKKCIFLGYSDEQRGYRLLHLDSGK FT EFVSRDVIFDESRVYFQRHKDPGVPSTGFLSGDSRASSQPVFFHPWEDEED FT NPLPRLGCAYAPAAGGASTSAVTRAPEPDHVPEVVPDPEPEHNIPEPEDMV FT PEPVRHRDPDVIQVLSRSGRPLTYTAKGEAYQREQAEKRARVAVRASYHQS FT RTAMFTAAEVKIPVTLAQAKKSPYAAAWGEAIDAEMRAHAKNETWYLPDEV FT PHNANVVSTKLLFCVKAGPSGEVQRFKARLVARGFTQIEGIDFTETFSPVV FT KMASIRLLLALAAQHDLYVEQVDVKTAFLHGEIPEEVYIQLPTGLDPSQRI FT YRLKKALYGLKQSPRIWYKKIDSFLISLGFQKNHADSNVYMKIEDGALVIL FT ALYVDDGIFVSNNRDLLAEIKRKLGAQFEMQDLGPVHTFLGIQVQRPRPGV FT VTLSQRAYVEDVLRRFGLENLNPSVTPMQASTHLSAEMSPSEAEKQQMELV FT PYRQVVGCLIYLAVCTRPDIAYSVGEVAKYMANPGWQHWQAVKRILRYLRG FT TANFGLSYQRQVSGHAFILRGYADANYAGDLDDRKSTSGYCFFLGDGVVTW FT SSKRQAVTALSTTEAEYLALTGAAQEASWLRELVASMQLRQQGPTVILSDN FT QLAIALSENPRYHARTKHIQIKYHYIREQVMGGELILKYVATEDQVADIFT FT KALPPIVFCKHREVLGVCDLSSQGSG" XX SQ Sequence 4287 BP; 1084 A; 911 C; 1179 G; 1113 T; 0 other; tggtatcaga gcaataggtt agattttttt ggcacgagca gtgccataga tgctaggaca 60 ggatggcgtc gtcttcttcc tccagagaca tggagcagtt tgatgggacg aatttccttg 120 cctggaaaga acatgctcag ttctggttca tgaggtgggg attgtggcct gtagtatctg 180 gatcaagaaa atgtctgtcc aaggacgatg atgatacaga tccatacaat gagtggaaag 240 atctggatgc tagggcaaat ggagcattag gaggtggact tggccctctc tacagtgtcc 300 acgtgaatgt ggagaagagt tctgctgaga attggaagtc aatttgtgaa attatgggag 360 tggacctgca agaagacgtg gacgtgattc ttcatcgcag tgagttatac agcctggagc 420 agcaaccaca cgagcgcgtg caagactaca tcacaagact tcagcgcaaa gtggtggaga 480 ttcgattgct ggacccagaa gctactgtga cagatcaaga gtttaatgca gttctgttca 540 aggggcttac aactcgtgct atgaagtctt atcttcgtta tatcaagaag attcccgaca 600 ttacacagcg gcagattttt gctgagcttg ttcagcacga gaaaaccgtt ataggtgaag 660 gcaatgctgc tgagcaggac gggattgcca tggtgactcg tggtaatcag cacggacaag 720 cagggcgctc ctctatcttt aatcgacttg gaaataagcg ctccaacagc accgaggaaa 780 agccagccac caagcaagaa ttcaatttga agtgtgggac gtgttcaaag cgtgggcacc 840 tgagcaggga ttgtccagtg aagaagcaac gtcgtgagac aaaattgaaa gctgagcgtg 900 gatcttcctc tagtgcggca ccacgtttta aaagtcgacg ccgagatgaa ggtgatgatg 960 aagactcttc cgctgcagcc aatggcttgt catggatgac tcgaggagta gaggtggata 1020 ccacaagccg tgttctttgg ctggattcgg cagcaacgaa tcactcaact tttgaccgtg 1080 agctattttt ggagatgagg aaatgcactg gccaagtgcg actcacagat aacagcttgt 1140 tagcggttga aggtgtgggc acgattgaag tgcgtctacc gacaggcttg gtggttccag 1200 tcaagcatgt gtggtacatc cccaaggctc aacattcctt ggtgtccctt ggacaaatga 1260 tggagcaagg attcaacttg gagttttgtg gtgatcgtgt taagatcaca catccagagg 1320 ttggacatgt ggcttcagca agcaagatag gacgactgtt ccggatggat tgcgaggttt 1380 gtgttccagg gaagctgcta gctacgatga cagtggctac tgcgagttca tcttcagggg 1440 gagctgcaga tatccaaact tggcatcgtc gacttggcca cgtgaatcac aagacgatcc 1500 agcagttgca gcgagaccac gtggttgatg gcttggccat cacgtctttt tcaatgccat 1560 tatgtgagcc atgcatcatg ggaaagcagc atcgtcgggc gttcaactct ggcgggagtg 1620 ttcgggcgac aagtcctctt cagctggttc actcagactt atgtggccct tttcaagtga 1680 tgacacagcg taagaagagg tactttattt cgtttattga tgatgctacg aggtatgtgg 1740 ctgttaagtt cttagctact aaggacgaag ctttgctagc atttaaggct tataagcatg 1800 aagtggagaa ccagctcgat ttacgcatca aagtgctccg ctctgatgga ggaggtgagt 1860 acgtgtccgt caatttttct gattactgcg agaaagcagg aattcagcgg caattcacag 1920 ttccatacac tcctgagctt aacggggtag ctgagcggtt taacaggaca gtggtggagc 1980 tggctaggac gatgattgcc gatgctggtc ttccgcctag gttttgggat catgctatag 2040 ccacagctgt cttcgtgcgt aatagggtgt tgaccaccgc tgttaaatcc aagaagtgta 2100 tatttctggg ctatagtgat gagcagcgag gatatcgact ccttcatcta gactcgggaa 2160 aagagtttgt gagtcgagat gtcatctttg atgaatctcg tgtgtatttt caacgtcaca 2220 aggatccagg agttccttct acaggttttc ttagtggaga cagtagggcg agctcacagc 2280 ctgttttctt tcatccatgg gaagatgagg aggataatcc tctacctcga cttggctgtg 2340 cttatgctcc agctgcaggg ggagcttcaa cctctgctgt gacacgagct ccagagcctg 2400 atcacgttcc tgaggtggtt cctgatcctg agcccgagca caatattcct gaacctgagg 2460 atatggttcc tgaacctgtg cgtcaccgag atcctgatgt tatccaggtt ttgagccgct 2520 ctggtcgccc tttaacctat acagcgaagg gtgaagctta tcagcgagag caagctgaga 2580 agcgagcacg agtagccgtt agagcttctt atcatcagag tcgaacggct atgttcacag 2640 cagcagaggt gaagattcct gttacgcttg cacaagctaa gaaatctcct tatgctgctg 2700 cgtggggtga agctattgat gctgagatgc gagctcatgc aaagaatgaa acctggtatc 2760 ttcctgatga agttcctcac aatgctaatg tagtttcgac aaagctactt ttctgcgtga 2820 aagctggacc ttcaggagaa gtgcagcgct ttaaagctag gcttgtggca cgaggcttta 2880 ctcagatcga aggcatagac tttacagaaa ctttcagccc ggtcgtgaag atggcttcta 2940 tcaggctgtt acttgcttta gcagcacagc atgatcttta tgtggagcaa gtggatgtga 3000 agaccgcatt tttacatgga gaaattcctg aggaggttta catccagctc ccgacaggcc 3060 tcgatccgag ccaaaggatt tatcggctga agaaggcttt atatggcctg aaacaaagtc 3120 cacgtatctg gtataagaaa atcgattctt ttctgatttc tcttggattc cagaaaaacc 3180 atgccgactc aaacgtttat atgaagattg aggatggtgc cttggtcatt ttggccttgt 3240 atgtggacga tggtatcttt gtttccaaca acagagatct tcttgctgaa atcaagagaa 3300 agctaggagc ccagtttgag atgcaagatc ttggccccgt gcacactttc cttgggattc 3360 aagttcagcg accacggcca ggagttgtga cactctcaca acgagcttat gtggaggacg 3420 tattgcgcag gtttgggctc gagaacctca acccttccgt tactccaatg caagcgagta 3480 ctcatttgtc tgctgagatg tctcctagtg aggctgagaa gcaacagatg gagcttgtgc 3540 catatcgcca ggtcgttgga tgcttaatct acttggctgt ttgtacccgc ccagacattg 3600 cttattctgt gggagaggtg gctaagtata tggcgaatcc aggctggcaa cattggcaag 3660 ctgtgaagcg catcttgcgc tatctcagag gcactgctaa ttttggcctg agctatcaac 3720 ggcaggtttc tggtcacgca tttattttgc gaggctatgc cgatgcaaat tatgcagggg 3780 atttagacga caggaagtct acatccggct attgcttttt ccttggtgat ggagtggtaa 3840 cttggagcag caagcggcaa gctgtgacag ccttgtcgac aactgaagcg gagtatctag 3900 ctttgacagg ggcagcacaa gaggcgagct ggcttcgtga gcttgtagcg agtatgcagc 3960 tacggcaaca aggacccacg gtcattctct cggataatca attggcgatt gctctttcag 4020 agaatccgag atatcacgcc aggacgaagc atatacaaat aaaataccac tacatcagag 4080 aacaagtgat gggaggagag ctgatactta agtacgtggc aactgaggac caggttgctg 4140 atatattcac taaggctctt ccacctattg ttttctgcaa acatcgagaa gtgcttggag 4200 tatgcgacct gtcctcgcag ggctccggct aggtgggcgg caatggtcac gctggtgata 4260 aagatccagg tgtccattga gggggag 4287 // ID Copia-1_CMe-LTR repbase; DNA; PLN; 1553 BP. XX AC AP006495; XX DT 03-MAR-2011 (Rel. 16.03, Created) DT 03-MAR-2011 (Rel. 16.03, Last updated, Version -1) XX DE LTR retrotransposon from the Cyanidioschyzon merolae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_CMe_; KW Copia-1_CMe-I; Copia-1_CMe-LTR. XX OS Cyanidioschyzon merolae OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; OC Cyanidioschyzon. XX RN [1] RP 1-1553 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Cyanidioschyzon merolae genome."; RL Direct Submission to RU (03-MAR-2011). XX DR Genome; AP006495; Positions 211590 213142. XX SQ Sequence 1553 BP; 325 A; 444 C; 483 G; 301 T; 0 other; tggaacgggc ccacagcgct caatcgggcg tacacacgaa atgcggagca tctcgtattt 60 gtcatgaaca aatgacccgg taggcctctt ccgacacagc gtacttgctc tcgttcgcac 120 ctcgggattt ttggacacgc cagtctctct ggaccccgca gttccacggt ctcccgtcga 180 aggatgctcg tggcagcgcc cgagtcccga tctcacagct gccggctgtt gtcgatgcag 240 ttcatccacc ggcgagactt gcaatccatg cttcgcttgc cagcttcgtc ttcttcgaat 300 acagcgccga tgcgctttgc gcagcggtcg cactcgactg ctgttgtcgg gtatcccaca 360 tgtccagcgc acacccgtca ccgagtgcag cgctgtgcgg cgtgaaggac tcctccagtg 420 ctcggtgcac gcccctgacg agtacagaag gcgtcgctcg atgccgtgct ccgttgccgc 480 gcccggtacc gtacactgtc gtcacgaact tgttcagggc gatcccctcg gcgagtacgc 540 tgtccgcggc agacgcaagc gaaggcttct gcattacgca gaggatctgt gaaacgcggt 600 gctgtccgtg atagagcacg gagcagacgg aagcttcaca ctcgagaagt cgtcgacata 660 ctccgagccg tttccgatcc ctggttgcaa agcggtgaca caggctccgc tggaagcgag 720 tgccgggaga gctggtatcc gagtccgaga ccgagcaccc atggacgggc aggagccgag 780 cacccgtgga cgggcaggag ccgagcaccc atggacgggc aggagccgag cacccatgga 840 cgggcaggag ccgagcaccc gtggacgggc aggagccgag cacccgtgga cgggcaggag 900 ccgagcaccc atggacgggc aggagccgag cacccatgga cgtccgtgcc ctgtggggta 960 ccgtgcttgc gtcgaacgcc gtctcagcgg tgttagcaag gagccgggcg atatgtctcc 1020 tcggccgagt tcgacgctct gacttgcgaa gtacggtgag cgatcggctc gagcttgtga 1080 gcaagtcgtt aacggacggc gtcgacgaac gttccgaaag cgtccaggtg cttgaggtgg 1140 cgcgcccact gggttgcctc ggaatagcaa gatcgaaaac ctgaagattg gatactcgga 1200 gcgggctgca agtgaagata gaagaagaga ggcgtctagc gcgtatgcat acaacggtag 1260 tatcgattcg tttacgatgc cttgttcgcg ggtgtcccga atcgtctcga ttctggtgac 1320 gtaacgagtt gcagcggcac atcgttgaac gtgtcgctcc gcgagaaaga agaaccaccg 1380 acctagaatc ctgagagtgt atacgaatcc gtaagcattt tattggtgct ccatgaaagt 1440 cagcgctttg catctgaaca agttcagagg gaaatctaaa tgcaggaaca gggtgtgcag 1500 ttcttttgta gacttatatc tgacgcgggt gtctgcaact gccaacgcag gca 1553 // ID TY3 repbase; DNA; PLN; 5510 BP. XX AC M34549; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE S.cerevisiae Ty3-1 retrotransposon integrase gene, complete cds, DE and Cys-tRNA gene. XX KW Gypsy; LTR Retrotransposon; Transposable Element; TY3; integrase; KW transfer RNA-Cys; transposon. XX OS Saccharomyces cerevisiae OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Saccharomyces. XX RN [1] RP 1-5510 RA Hansen J.L. and Sandmeyer B.S.; RT "Characterization of a transpositionally active Ty3 element and RT identification of the Ty3 integrase protein."; RL J. Virol 64(6), 2599-2607 (1990). XX DR GenBank; M34549; Positions 1 5510. XX SQ Sequence 5510 BP; 1955 A; 1306 C; 919 G; 1330 T; 0 other; aactttcatg gaaggaccac ctagttaata aaaagctcgc actcaggatc gaactaagga 60 ccaacagatt tgcaatctgc tgcgctacca ctgcgccata cgagcttgat tttctgaaag 120 tgttgtatct caaaatgaga tatgtcagta tgacaatacg tcaccctgaa cgttcataaa 180 acacatatga aacaacctta taacaaaacg aacaacatga gacaaaaccc gaccttccct 240 agctgaacta cccaaagtat aaatgcctga acaattagtt tagatccgag attccgcgct 300 tccaccactt agtatgattc atattttata taatatataa gataagtaac attccgtgaa 360 ttaatctgat aaactgtttt gacaactggt tacttcccta agactgttta tattaggatt 420 gtcaagacac tccggtatta ctcgagcccg taatacaaca cctggtagcg ttaaaggtta 480 ctaattgttc aaacgaacca tcgaaaagcc gaacctagct acaccacacc ccagtatgag 540 ctttatggat caaatcccag gaggaggaaa ttatccaaaa ctcccagtag aatgccttcc 600 taacttcccg atccaaccat ctttgacctt cagaggtaga aatgactcgc ataaactgaa 660 aaactttatc tccgaaataa tgttaaacat gtctatgata tcttggccga atgatgccag 720 tcgtattgtg tactgcagaa gacatttatt aaaccccgct gctcagtggg ctaatgactt 780 tgtacaagaa caaggtatac ttgaaataac attcgacaca ttcatacaag gattatatca 840 gcatttctat aagccaccag atatcaataa aatctttaat gcaatcacgc aactttccga 900 agctaaactt ggtattgagc gtctcaacca acgattcaga aagatttggg acagaatgcc 960 accagacttc atgaccgaaa aagctgccat aatgacatat actaggctat tgacaaagga 1020 aacctataat attgtcagaa tgcacaaacc agagacatta aaagacgcca tggaagaggc 1080 ttaccagaca actgcactaa ctgaaagatt cttcccagga ttcgaacttg atgctgatgg 1140 agacactatc atcggtgcca caacccactt acaagaagaa tacgactctg actatgattc 1200 agaagataat ctgacccaga atggatacgt ccataccgta aggacaagaa gatcttacaa 1260 taaaccaatg tcaaatcatc gaaacaggag aaataacaac ccatctagag aagaatgtat 1320 aaaaaatcgg ctatgcttct attgtaagaa agagggacat cgcctgaacg aatgtagagc 1380 acgtaaggcg agttctaacc gatcttgaac tcgaatcaaa agaccaacaa actcctttta 1440 tcaaaacctt accaattgta cactatatcg ccatccccga gatggacaat accgccgaaa 1500 aaaccataaa aatacaaaac acgaaagtaa aaaccctgtt tgacagtgga tcacccacgt 1560 catttatccg aagagatatt gtagaacttc tcaaatacga aatctacgag acccctccac 1620 tccgttttag aggattcgta gccaccaaat ccgccgttac atccgaagca gtcaccattg 1680 acctcaaaat caatgacctg catataactt tagccgcgta catactggat aacatggact 1740 accaattgtt aattggaaat ccaatcttac gccgctaccc gaaaatcctg cacacagtac 1800 tgaataccag agagagcccc gactccttaa agcccaagac ttatcgctcc gaaaccgtta 1860 ataacgttag aacctactcc gctggtaatc gtggtaaccc cagaaacata aaactgtctt 1920 ttgcccccac cattctcgaa gcaactgacc cgaaatccgc tggtaatcgt ggtgactcca 1980 gaaccaaaac cctgtctctt gcaaccacta ctcctgcagc aattgacccg cttacgaccc 2040 ttgataaccc aggtagtact caaagtacat ttgcgcaatt cccgatacct gaagaagcga 2100 gcatcctaga agaggatgga aaatactcca acgttgtctc aaccattcag agtgtagaac 2160 ctaatgctac tgatcacagc aataaggaca ccttttgcac tttgccagtt tggttacaac 2220 agaagtatag agagatcata cgtaatgatc tcccaccaag acctgccgac attaataaca 2280 tccccgtaaa acatgatatt gaaattaaac ctggcgcaag actacctcga ctacagccat 2340 accatgttac agaaaagaac gaacaagaaa tcaacaaaat agttcaaaaa ctgctcgata 2400 acaagttcat tgttccctca aagtcgcctt gcagctcccc tgtagtcctc gtcccgaaga 2460 aagacggtac cttccgactc tgcgtcgatt accgcaccct gaacaaagct accatctccg 2520 acccattccc attacccaga atcgacaacc tattgagccg tattggaaat gcccagatat 2580 ttaccacgct agatttgcat agtggttacc accagatccc gatggaaccc aaagaccgct 2640 acaaaaccgc ctttgtcaca ccatccggta agtatgaata taccgtcatg ccatttggct 2700 tagtcaatgc acctagtaca ttcgcaagat acatggctga tacatttaga gacctgagat 2760 tcgtcaatgt ttaccttgat gatatattaa tattctccga atctccagaa gaacattgga 2820 aacatttaga cacggtacta gaaagattaa agaacgagaa cctcattgtt aagaagaaaa 2880 aatgtaaatt tgcatctgaa gaaactgagt ttttaggcta tagtattgga atccagaaaa 2940 tagctccact acagcacaaa tgtgcagcaa tccgagactt tccgacgcct aaaacagtaa 3000 aacaagcaca gagattttta ggaatgatta attactacag acgattcatt ccaaattgct 3060 ccaagattgc acagccaatc caactgttta tttgtgacaa aagtcaatgg acagaaaaac 3120 aagacaaggc aattgataaa ctaaaagacg ccttgtgtaa ctcccccgtc ctagtaccat 3180 tcaacaacaa agcaaactac cgacttacaa cagacgcctc aaaagacggc attggtgctg 3240 ttctagaaga agtcgacaac aagaacaaac ttgttggtgt cgtcggttac ttctctaaat 3300 ccttagagag tgcccagaaa aactatcctg ctggcgaatt agaactactt ggaattatca 3360 aagcactcca ccacttccga tatatgcttc acggaaagca tttcacgtta agaacagacc 3420 acattagttt gttatcatta caaaacaaga acgaacccgc acgacgcgtg caacgctggt 3480 tagatgacct agccacatat gacttcacct tagaatacct agctggaccc aagaacgttg 3540 tcgcagatgc catatcccgt gccgtatata ctataacccc cgaaacatcc cgacctatcg 3600 acacagaaag ctggaaatct tactacaaat cagacccatt atgtagtgct gtcttaattc 3660 atatgaaaga attgacacaa cacaacgtca cacctgaaga tatgtcagcc ttccgtagtt 3720 accagaagaa actcgaacta tcagagacct tccgaaagaa ttattcccta gaagacgaaa 3780 tgatctatta ccaagaccga ctagtagtac caataaaaca acagaacgca gttatgagac 3840 tatatcatga ccatacctta tttggaggac attttggtgt aacagtgacc cttgcgaaaa 3900 tcagcccaat ttactattgg ccaaaattac aacattcgat catacaatac atcaggacct 3960 gcgtacaatg tcaactaata aaatcacacc gaccacgctt acatggacta ttacaaccac 4020 tccctatagc agaaggaaga tggcttgata tatcaatgga ttttgtgaca ggattacccc 4080 cgacatcaaa taacttgaat atgatcctcg tcgtagttga tcgtttttcg aaacgcgctc 4140 acttcatagc tacaaggaaa accttagacg caacacaact aatagatcta ctctttcgat 4200 acattttttc atatcatggt tttcccagga caataaccag tgatagagat gtccgtatga 4260 ccgccgacaa atatcaagaa ctcacgaaaa gactaggaat aaaatcgaca atgtcttccg 4320 cgaaccaccc ccaaacagat ggacaatccg aacgaacgat acagacatta aacaggttac 4380 taagagccta tgcttcaacc aatattcaga attggcatgt atatttacca caaatcgaat 4440 ttgtttacaa ttctacacct actagaacac ttggaaaatc accatttgaa attgatttag 4500 gatatttacc gaatacccct gctattaagt cagatgacga agtcaacgca agaagtttta 4560 ctgccgtaga acttgccaaa cacctcaaag cccttaccat ccaaacgaag gaacagctag 4620 aacacgctca aatcgaaatg gaaactaata acaatcaaag acgtaaaccc ttattgttaa 4680 acataggaga tcacgtatta gtgcatagag atgcatactt caagaaaggt gcttatatga 4740 aagtacaaca aatatacgtc ggaccatttc gagttgtcaa gaaaataaac gataacgcct 4800 acgaactaga tttaaactct cacaagaaaa agcacagagt tattaatgta caattcctga 4860 aaaagtttgt ataccgtcca gacgcgtacc caaagaataa accaatcagc tccactgaaa 4920 gaattaagag agcacacgaa gttactgcac tcataggaat agatactaca cacaaaactt 4980 acttatgtca catgcaagat gtagacccaa cactttcagt agaatactca gaagctgaat 5040 tttgccaaat tcccgaaaga acacgaagat caatattagc caactttaga caactctacg 5100 aaacacaaga caaccctgag agagaggaag atgttgtatc tcaaaatgag atatgtcagt 5160 atgacaatac gtcaccctga acgttcataa aacacatatg aaacaacctt ataacaaaac 5220 gaacaacatg agacaaaacc cgaccttccc tagctgaact acccaaagta taaatgcctg 5280 aacaattagt ttagatccga gattccgcgc ttccaccact tagtatgatt catattttat 5340 ataatatata agataagtaa cattccgtga attaatctga taaactgttt tgacaactgg 5400 ttacttccct aagactgttt atattaggat tgtcaagaca ctccggtatt actcgagccc 5460 gtaatacaac agaaagttcc attttggatg ctctatttat gggaatatga 5510 // ID Sola3-2_PS repbase; DNA; PLN; 7271 BP. XX AC . XX DT 28-JAN-2009 (Rel. 14.02, Created) DT 28-JAN-2009 (Rel. 14.02, Last updated, Version 1) XX DE Sola3 DNA transposons from Phytophthora sojae. XX KW Sola; DNA transposon; Transposable Element; Sola3; TTAA TSD; KW Sola3-2_PS. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7271 RA Bao W., Jurka M.G., Kapitonov V.V. and Jurka J.; RT "New superfamilies of eukaryotic DNA transposons and their RT internal divisions."; RL Molecular Biology and Evolution 26(5), 983-993 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS join(161..1360,1364..2872,3314..4018) FT /product="Sola3-2_PS_1p" FT /translation="MPPRAASALVVVLYEAKRRDFEFLDISQWYQCMHPSI FT CRRSTRRYFSPSAPAEFKIQMSENEGQRGETEASKFPDITCGCKRPRCPVT FT GCWKCSRCGCSCDGLSPSVKRARTRGRPLAAVALEGCERALSVSSVDPAIS FT VAKRSTRQKSQRVRNVLIDDGSDCGDVDISPPVNLSAESDVSDCGAMDILS FT PVSVGAGPAASAGLRAQNEAGMYLSPAIFTPTPKARKRVDIFAVMQFLVCE FT ETQINMMKKKLPSKERRCSESFWSSSACGTGNDPRQQESQNAFGDQPRIER FT EHQERAVALRLVWNLLSHICTILCRKQTASVFLELFRSWISPGQISTISTI FT ATPVRVFMATKRGSGERWCVRALLCDAFPLSTLTNTAEQIEEFSFGRKNYM FT AGQKDLVLLVEGRIEKPKWSRAKYEKSTIDEAIRHVLSMDNVAFLSWGTKT FT VKVDGKKQIAPSIQRRKSITVIYEQYRARGGSIPRSTSYRLAGALTHGEVQ FT ARCAVDYVTGFLVNDNFRLLERIVRELLPEASIELLPKLSILREWLKYGSG FT FDIDTDSHPDCSKCPIHQVTYGLSLPKPGDQSSRTVCCRPCVAMCQLIDDV FT TKRLTVAEVDSTTIGVVKESHKKMELFLGHRIRVRNQQWAIREAAEAISNR FT SQRAKHSNEALVILDFKMKLEPTYFREKTVEHYGKRGMSWHGALVRYWMYD FT EDSGEAVETKHYFDQICNGDNKQDKEATAALVEALLLSLRRDVPHVTRLTF FT QSDNASNYQNAYLGLMLPILGEVHGYYVMRYVHSDTQDGKSMLDAHFATAS FT RKVKSWVRQGNDCATPAKVVEALTADGGLPNCIAELIEQDRAHGAELSQQV FT RPLEKSLSKIIDRANDIFYDFPLPLAPLESGFDLKKVPSYRMMVLAKEPTR FT RTRVMSSLTPVQAQDTSVTEENVTENDVEAYAKRKLLKLNIGGDFAARGEL FT SSKMLTIYPSANAIAPPVTARTASNEAVSSAAINPSSLSEAPATRLEAAVH FT ASKTVPTDADAFESDLDDGSEKSDNEFVLPDADSSEQDFGEHIAPSAGGTC FT LADGRDGSSAISVNPLKMGWARRPKRGEMYGTKYVALYEKEIEAMFQQGEK FT DQSQNMGPARMLEALILANPHRYNLPGEN*" XX SQ Sequence 7271 BP; 1756 A; 1728 C; 2122 G; 1665 T; 0 other; cagaaaatcc cgctaagagg gaacacaatt tgaggggaac acagaaaaac acataatgcg 60 gaaatagtcg aagcgttatg gtacttcgga tcgtgttctg gctgggcagc cggttagaaa 120 tgtgcttcat gcaatatagc gatgctaggc acatgaagca atgcccccac gtgccgcaag 180 cgctctagta gtagtgctgt atgaagcgaa gcgtagggat tttgagtttt tagacatttc 240 acagtggtat cagtgcatgc atccttcgat ttgtcggcgg tccactcgga ggtatttctc 300 cccctcggcc cccgcagaat tcaaaatcca aatgagcgag aacgaaggtc agcgcgggga 360 gacggaggct agcaagttcc ccgacattac gtgcggctgc aagaggccgc gttgtcctgt 420 aacaggctgt tggaagtgtt cgaggtgtgg ctgtagctgt gacggacttt ctccatccgt 480 aaagcgtgcg cggacgcgag gacgaccttt agcggctgtg gcgctggagg gctgtgagcg 540 tgcgctgtcc gtgtcgagcg tggatcctgc aataagtgtg gctaaaagat caacgcgaca 600 gaagtctcaa agagtccgga atgtgctgat tgacgatggg agtgattgtg gagatgtgga 660 tatatcgccg cctgtaaact tgagtgcgga gtcagatgtg agtgattgtg gagccatgga 720 tatattgtct cctgtgagtg tcggtgcagg gccggctgcg tctgctggtc tgcgtgcgca 780 aaacgaagct ggaatgtacc tgagtccggc tatcttcacg ccaacgccta aagctcgaaa 840 acgagtggac atttttgctg tgatgcagtt tctggtttgc gaagaaacac agatcaatat 900 gatgaagaaa aaacttccgt caaaggaaag gcgttgttct gaatcatttt ggtcatcaag 960 tgcttgtggg actggcaacg atccgcgtca gcaggaatcg caaaatgcat ttggagatca 1020 gccccggatc gaacgtgaac atcaagaacg agctgtcgcg ttgcgactgg tttggaactt 1080 gctgagtcac atttgcacga tattgtgtcg taaacaaact gcttctgtgt ttctggagct 1140 gtttcgatcg tggatcagtc caggccagat ctctacaatc tctacaatcg cgacaccagt 1200 ccgcgtcttc atggctacaa aacgtggatc aggtgagcgg tggtgtgttc gagccctgtt 1260 gtgtgacgcg tttcctctat caactttgac gaacacggcg gagcagatcg aagagttttc 1320 atttggcaga aaaaactata tggcggggca aaaggatctc taagtgcttc tagtggaggg 1380 tcggatcgaa aagccgaagt ggtcgcgagc taagtacgaa aaaagcacaa tagatgaagc 1440 tatccggcat gtcttgtcaa tggacaatgt agcttttctt tcttggggga cgaagactgt 1500 caaggttgat ggcaaaaaac agatcgctcc gtcaattcaa cgccgaaaat caattacggt 1560 catttatgag cagtaccgtg cgcgcggggg tagtattccc agaagcacgt cttatcgact 1620 tgctggtgca ttgactcatg gtgaggtgca agcgcgttgt gccgttgatt acgtaacggg 1680 ttttttggtg aacgacaatt tcaggctgct agagcgaatt gtacgcgagt tacttcctga 1740 agcatcgatc gagctgttac ccaaattgtc aatattgagg gagtggctca agtatggaag 1800 cggctttgat atcgacacgg acagccaccc cgattgctct aagtgcccaa tacatcaagt 1860 tacgtacggg ctttctctgc ctaaaccggg cgaccaaagc tctcggaccg tgtgctgccg 1920 tccttgtgtg gcaatgtgtc aactaatcga cgacgttaca aagcggttga cagttgcaga 1980 agtcgattca accacaattg gagttgtaaa ggagtcgcac aagaagatgg agctcttctt 2040 aggtcatcgc atacgcgtac gaaatcagca gtgggcgatc cgtgaagcgg cggaggccat 2100 aagcaaccgc agccagagag ccaaacactc caacgaggct ttagtaattc tcgacttcaa 2160 gatgaaactt gagccgacat attttcgtga gaagacagtc gaacattacg gtaagcgtgg 2220 tatgtcgtgg catggagcac ttgtgcgcta ttggatgtat gatgaagaca gtggggaggc 2280 cgtggagacc aagcactact ttgatcagat ctgtaatgga gataataagc aagacaagga 2340 ggcgactgca gcgctggtcg aagcgcttct gctatcgctt cgccgggacg tgccccatgt 2400 cacgcgcttg acatttcagt ccgataacgc gtcgaactac caaaatgcgt atttgggatt 2460 gatgcttccg attctcggag aggttcatgg atattatgtc atgcggtacg tgcactcgga 2520 cacgcaggac ggaaaatcga tgttggatgc gcactttgca acggcttcaa ggaaggtgaa 2580 gtcttgggtc cgccagggta atgactgcgc aacacctgca aaagttgtgg aggctctgac 2640 agcagacggt ggtttaccga attgtattgc agagctaatt gagcaggatc gagcgcatgg 2700 agcggagctg tctcaacaag tgcggccgct ggagaagtcg ctgtcaaaga ttattgatcg 2760 cgcaaatgac attttctatg attttccctt gccgctggcg ccattggagt cgggtttcga 2820 cttgaagaaa gtcccttcat acagaatgat ggtgttggcg aaggaaccaa cataattgtt 2880 gatccaagtg gcggtaggtg tagtgttgct tgcgagcctg cctctggagt aggcgttgtt 2940 gaagacgatg gtgcttctgt tgttgctgca agtgcaggac ctggtcatgg cagagctggc 3000 actgtcgctc accaacgaca aaaccaagaa agcaatgaca acattcagcg gcgcttacat 3060 tttgattgtg atgaagtggt cggcgattca cgagtgtgcg atggtgttca gcgagatagt 3120 gggcaaaacg actgtgatgg agatgaagat gtctctgatt ttgaagtcga agacgaatat 3180 cttttggatg acgatagcga cctaagcgcc ggtagaagat gattcagctg tagtaggcga 3240 ggcggtggta ttaccgcacg aagctacggg gatcatgaca gggattcgga tcaaaacgag 3300 tgctcaaatt tgacgtcgta cacgtgtcat gagctcactt acacctgtgc aagctcaaga 3360 tacaagtgta acagaagaaa atgttactga gaacgatgtc gaggcgtacg cgaagcgcaa 3420 acttctcaag ctaaatattg ggggagattt tgcagctcgt ggcgagcttt catccaagat 3480 gctcaccatt tatcccagtg caaacgcaat cgctcctcca gttacggcca ggacggcgag 3540 taatgaagct gtttcttccg ctgctattaa cccaagctca ttgagcgagg cacctgctac 3600 gagattggaa gcagcagtcc acgcatccaa aactgtgcca accgatgctg acgcgttcga 3660 gtctgattta gatgatggca gcgaaaagag cgacaacgaa tttgtgttgc ctgatgcgga 3720 ttcatctgag caagatttcg gagagcacat agcgcctagt gctggaggta cctgtttagc 3780 tgatggccgt gacggaagct cagcaatttc tgtgaacccg ttaaaaatgg gctgggcaag 3840 acggccaaag cgaggagaga tgtacggcac caaatacgta gcactttacg aaaaggagat 3900 tgaagcgatg tttcagcaag gtgaaaaaga ccaaagtcaa aatatgggtc cggcgagaat 3960 gctggaggct ctcatattgg ctaatccaca caggtataat ttgcccggag aaaactagat 4020 tcgagggttc atcacaaagt tgatgaagcg acgacggcaa cccacatctc aactagctca 4080 acaaccacaa ctgcgagctg aaagagaagc cttggaactc cctgaaatct ctacctcgga 4140 aaggtcttca aattcgagtg gcgataccga gcgttcagat ccgcagcagc atctaggtca 4200 aaagaaaaag aagatggtac cgacctatgc caatttcttg gcaggacttg tgaaagatga 4260 tcctcgaatc atgccgagac atgcgttagc catgctgtac taccagtttc ctgatgctcg 4320 gggcaaggca gatgaaaaac gtgtccggga taaagtttct gatctccaaa ggaagccgaa 4380 aatacgtcga agtcgtgttt cctcacctac atctacacct tcaagctaaa tatcgagcac 4440 atttgcgtcg gacatcaagg gaagtaaccc acagctagtg gatatcctgg caccaagccg 4500 tgctggacta gatgcgacgc ggtggcacga gagcgactgg tgtctggcgg gtacgcacaa 4560 agtaatctac ttcatgcggc gggcgaggtt taacgacgaa atgctgtgca cagtttttcc 4620 cggtaagagg acagataagc aacatgttac agcttcattc aggtgctgat tcaagtccat 4680 taatgcatat gctgctgttt gtgaagatgt gccacaggcg gcgccagaag cagcggggtg 4740 gcgtccatgg ctttgacaca ttcgtgatgg ggaccattgc tatcactgag gcgctcgact 4800 agaagcgtac ggactgtatt tttcgtgttt gagagtgttt ttcgggtgct tacagtgcac 4860 gtttgtttgt acttgcgttg acagggcggt acacaccgag cacgccttta actgcgagtg 4920 tgtgaatctg atgctacttt tctggagcgg attcacttga aatctcaagg gcatcggtct 4980 acgcaagcca cggtcgctcc tacctacttt tcaaccgacc acggtggatt gcaacctccc 5040 acaaagccgg acatgaactg cccaagcgat cgtgtcgagt cctcaggcaa gagccgaatc 5100 gccagctacc tcaccaagcg cgacgacggg gtcgagaacg tggatcataa cgtctccgac 5160 tccgataaca gcgacgaaga gagcgatgtg aagacatgcg aggtggtgtt ggcgccgcgc 5220 actgccaagt cgcagaccgt ggcggtatcc acgaacgtga cgctggtgga ctcggtgtcg 5280 tcgcgcgctg tggtggcgga ggtgtggcat gtggttcgga gcatcctcga tcctcggtct 5340 ctggtgtcgt cggcggtgat gtcgcagctg ttggtggtgg agagctgaga ggacgagccg 5400 gcgttgctgt cgatgagcgc attgaacgtc gctggacatc accgcgagta ctggtccgtg 5460 gacgtggaag ttcacgggcg cgactttggc gcttctgtga gcggcttgac cctcgacggc 5520 gattcgttgg aggtggagga gcgtgctggc ggcagcgtgg tgggcgtgtc gaccgtgtca 5580 acggtgacgc tggctcggaa tgctccgtcg gataatgggt ctgctgcagc ggacgtgctg 5640 caggtggtct cagtggtgtc gttttcgggt gtgctccgag tgtccgtact cgtgctctgt 5700 cgagagcggg ttcgaggaca tccgacataa cgacggcgac acgatccaaa tcgtgggtaa 5760 cccctgccgt tgtggtgcag acagcgctta ctctcgcctc gtggaacatg tacagcgcta 5820 tttcgaacta gggcattcaa ctcgccatca agtgcaccaa gtacctcatc agcctcacta 5880 agtcgttcct caagtacgtt ctctacctca aggtgtgcaa cctagaggct ccggaagacg 5940 ggctggtcgc catcctctat cagagcgaca atatcgatat cccagtgacc atctcctact 6000 gcatggggga atggcgtctg atgcagtcaa actcgctgac ggcgtgctcc gagtacgcgc 6060 tgagggaaat catctcgtac ggggacgcca tcgtctccag ctggaaacgg ttcacgggct 6120 tcatgaagac acgggcttca tgaataactc acgatgggcg agacagtcga ctcgctcagc 6180 gagaaggaca tcaccaacct gaagcctgcg ctcgagtcca actcaacctg cggcttcgac 6240 atgaagcggc tgctggacca cacgtggctg actgtggcag agctgcgtcg actgaaccca 6300 ggaatctccg atgacaatat ccgcgtgatc atgagccagt cgaacctcgt gctgcgcgac 6360 atcaccgtcg ccaccagcaa ctgcatgagc gagggactgg tggcacatgt cctcgatcgg 6420 gtccgagttc ttcgagccga tctggatttc tggattttac cggcgctgga ggtggtttgg 6480 tggcggcatc agttacgggg gcgtgcacga cagctagtgc accacggaca ccacgagtac 6540 ctggatctgc agtcagatga ccatgagctg gcggcctatg cctggtcgca cagcgtcaca 6600 agagtggcag cacccgaccc cacgccagcc agcgacacgt tcgtccaggt cggagccagc 6660 cacgcagcga caccgcgtcc aggggaccga gaaacatgct gtccgccgat atgagggaat 6720 atgcgcgagc ggccacgccc ccgttggcct cgtggaacag cgtgtgctgc cagcgcgtgg 6780 gcttctggtc gtacagcagc ggcgacaact cccaacgact gtcttgagcc gcaggaatgg 6840 caggatggcc agctctcact atgcgtggtg attttggagc tgaacacgca ggtgctgcgg 6900 tgcttgcacg cctgcgagcg acagaagtat ctacggcgat ggcagcagcg tgcgggccgt 6960 ttcgggcacg gcctgcagtg actgtcgtga cgttgcgcgg atggtgggca aggtactatc 7020 tcatattttt caaaattgtg aaaagtgcat cccatcacag gcaggtgaat cgaccgaggc 7080 gccttgccgg agcgctcgtt gcgaacagga gcttggactt gcccagcaag aagacccgtg 7140 atactaggtt ttagatactg agctacacgg tggtaccatt ttcattctgc agtggcaaag 7200 accgcattta gttttttttc ggctttcacc gttttgggcg ttttttgttc ccttcttagc 7260 gggatctcct g 7271 // ID Copia-10_ES-I repbase; DNA; PLN; 5078 BP. XX AC CABU01005163; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-10_ES_; KW Copia-10_ES-LTR; Copia-10_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-5078 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01005163; Positions 31409 26332. XX CC Positions [2258-2773] - Integrase core CC 'CTTCT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 44..3754 FT /product="Copia-10_ES-I_1p" FT /translation="MSTSSANIFKQGYVPFNGNPNEYHRWSSLFRSIMYET FT GLGEVMSGTEKAPEAPVDGTADAVAAYETKKRDFKQKNGRLFTRLDLATSE FT CAEGFQSAASLVVGSFNAVYPEEWGDGRAAFLALEAKYRKTGAFRMQELQQ FT QLGALSVTAADKYDPARAIQELRRISAELEALGDKVVSTRKTHTFLNALPD FT QQYGQFKAALVCEQSRDDNSDLNLDFERVAHRATAFHSLQIRGKDTTNDDG FT SGSHGRALNTTVHGGAREFRKHGGRGRNRRGNGGRNADGNNSSNGNSSSGG FT TNSNGNPSGGRGARSAQGARGKDRGNQNSGGGRGRGQQNGQDRKRRCRYCH FT NSTEHQWQNCPLRLSNEAEDAKEQANVSQESTTTQAWFTQVRGGSKGLEDF FT SIIIDDCPRVQEVPAATQAEKRVAEYPQVPEVPAAAKPEERAAGYTQVLEA FT PAAAKPEERAAGYPQVLEAPAVAQPKACAAGDTQVLEALAVAPPEERADAV FT GDVQALKTPGVVTDDEPAAVHVQVEEAPGATETVAFTSVFQVKEQVKSLES FT TTVFIDTAASSHMVWAESPVATHVGERYACNVQVEGSCGQSNATQKGKLKF FT GLRNDKNETIPVSLEVLLVPDLGANIFSVGALEEKGVLCDLMSTPPALRGG FT QHAFPISKEIPRMYVVNIIVDDVSLDGSAKLFRTKVDAHLWHRRMGHCNPR FT ALQLLADKEHSGVKFNRNIESGDCEVCSAGNSKKSSHPPSDRPRADARLEL FT VHVDTWGPHSEESYGGSRRAVMFTDDNSRMRWGIPIKTKGEAAEGLETVVK FT EVADPLGICLDTVNCDGGAEFKGRFDALAQSLGIKITTNAPYVPEGNAIAE FT RGFGIVIATTRRLLLGAPHLPGRLWAEAFKTAIYILNRTPTEALDGKAPLE FT VWEGKPLGSLKHMHEFGSVCFKHEEARFRPNKLAARAKKMYLVGYNSKSRS FT YRLWDPTEPSKITNSGEVSFCEKDPRDVVPPKVGADPLPEPGRIIYQPGWE FT ETIDEEENQEEQKDDGGMEPTPQQQEPGLRRSGRNPVPRTVMDLHTAEKAY FT ERMEYSLLTGSVLGATGTGSPGEAGYMPPDPANYSQAVSGPDADAWKESMR FT DEGRSLVEHDVFDWVDLPEGAQALPAKYLFKVKYNQDREPVRLKSRIVVQG FT FHQADTGEDKAAPVASMETVHLFVASAAQNGFVLKQADIKTAFLHARVPKN FT AKPIFVIPPKGFECSPEQARQVWLLKA" XX SQ Sequence 5078 BP; 1230 A; 1334 C; 1555 G; 959 T; 0 other; ggttgtgagc ctcgcgtttg gtgggtaatc acatcgagtc atcatgtcta cgtcgtctgc 60 aaacatcttc aagcaaggat acgtcccgtt caacggaaat cctaatgagt accacagatg 120 gtcgagtttg ttccgctcga tcatgtacga aaccggcctg ggcgaggtta tgtctgggac 180 ggagaaggct ccggaagctc cggtggatgg cacggcggat gctgtcgcgg cgtacgagac 240 caagaagcgt gatttcaaac aaaagaacgg taggctgttc acgcggcttg atttagcgac 300 gtcggagtgc gccgagggat ttcagagtgc tgcgtctcta gtcgtagggt ccttcaacgc 360 cgtttatcct gaggagtggg gtgacggacg tgctgcattt ctcgccctgg aagcaaagta 420 ccgaaagact ggagcgttta ggatgcaaga gctgcagcaa cagctaggag ccctgtccgt 480 cacagccgcc gacaaatacg accccgcgcg cgcaatccaa gagttgcgcc gcatttccgc 540 agagctcgaa gcgcttggtg acaaggtcgt gtcgactcgc aaaacccaca ccttcttgaa 600 cgcgctacct gaccagcaat acggacaatt caaagctgcg ctggtgtgcg agcagtcgcg 660 agacgacaac tccgatttga acttggattt tgaacgtgtg gcacaccgag ccactgcttt 720 ccactctctg cagatcaggg gcaaggatac taccaatgac gacggctctg gaagccacgg 780 ccgtgcgctc aacacgaccg tgcatggagg agcacgcgag ttccgtaaac acggtggacg 840 tggacgcaac cgccgaggaa atggcggcag gaacgcggac gggaacaaca gctcgaacgg 900 caacagcagc agcggtggaa ccaactcgaa cgggaaccca tcaggaggac gtggcgctag 960 aagcgcccaa ggtgcacgcg gaaaagatcg cggcaaccaa aactccggtg gaggtcgagg 1020 acggggtcag cagaatggcc aagaccgcaa gagacgctgc aggtactgcc acaattcgac 1080 cgagcaccag tggcaaaact gccctcttcg cctctcgaat gaggcggagg acgccaaaga 1140 acaggcgaac gtatcgcagg aatccaccac cactcaggca tggttcacgc aggtccgggg 1200 aggtagcaag ggtctagaag acttctcaat tataatcgat gactgcccgc gggtgcaaga 1260 agtgcccgcc gcgacgcaag cagagaagcg cgtcgctgaa tacccgcagg tgccagaagt 1320 ccctgctgcg gcgaagcccg aggagcgcgc tgctggatat acgcaggtgc tggaggcgcc 1380 tgctgcggcg aagcccgagg agcgcgctgc tggatatccg caggtactgg aggcgcctgc 1440 tgtggcgcag cccaaggcct gcgctgctgg agatacgcag gtgctagaag cgcttgctgt 1500 ggcgccgcct gaggagcgcg ctgacgctgt tggtgacgtg caggcgctga agacgcctgg 1560 agtggtgacg gacgatgagc ccgctgccgt gcacgttcag gtggaggaag cccctggtgc 1620 aacggagacc gttgcattca ccagcgtttt tcaagtcaag gaacaggtca agtcccttga 1680 aagtacgaca gtgttcatag acaccgcggc atcaagccac atggtttggg ccgaatcccc 1740 tgtcgcaacg cacgtaggcg agaggtacgc ctgcaacgtt caagtcgaag ggtcctgtgg 1800 ccagtccaac gcaacccaga aaggcaagct aaaatttggc ctacggaacg ataagaacga 1860 aacaatccca gtgtcgctgg aagttctcct ggtaccggac ctaggagcaa acatattttc 1920 ggttggagct ttggaagaaa agggggtgct gtgtgatctg atgtctaccc cgccagctct 1980 tcgcggcggt cagcacgcgt ttcccatctc gaaagaaata ccgcggatgt acgtggtcaa 2040 tatcatcgtc gacgacgtga gcctggacgg atccgcgaaa ctgtttcgca ccaaggtcga 2100 cgcgcacttg tggcatcgga ggatgggcca ctgcaacccg cgcgctctcc agctgctggc 2160 ggacaaggag cactcgggag taaaattcaa ccgaaacatc gagtccggag attgcgaggt 2220 atgttccgcc ggaaacagca agaagagcag ccaccctccg tctgatcgtc ctcgcgccga 2280 cgcacggctt gagctcgtgc acgtcgacac gtgggggccg cattctgaag agtcatacgg 2340 tggtagccgg cgcgcagtga tgtttacgga cgacaactcg cgcatgagat gggggattcc 2400 gatcaaaacg aaaggtgaag ctgccgaagg gctggaaacg gttgtcaagg aggttgctga 2460 cccgctagga atttgcctag atacagttaa ctgcgatgga ggggccgaat tcaagggaag 2520 gttcgacgcg ttggcacaat cacttggaat caaaatcacg accaacgccc cgtacgtccc 2580 tgagggtaac gccatcgccg agcgtggttt tggcattgtt atagccacga cgcgccgcct 2640 cctcttgggt gcaccgcatc tcccgggccg cctgtgggct gaagctttta agaccgcaat 2700 ctacatcctg aaccgcacgc ccacggaagc attggacggc aaggcaccac ttgaggtatg 2760 ggaaggcaaa ccgctcggca gcttgaagca catgcacgaa tttggttcgg tctgttttaa 2820 gcacgaggaa gcgaggttcc ggcccaacaa gcttgccgcc agggccaaga agatgtatct 2880 ggttggttac aactctaaga gcaggtcgta caggctttgg gaccccacag aaccctcgaa 2940 gatcaccaac tccggcgaag tgtccttctg cgagaaagac ccgcgcgacg tggttccccc 3000 caaggtagga gcggacccgc tgcccgagcc cggcaggata atttaccagc ccggctggga 3060 ggaaacgatc gacgaagaag aaaatcaaga agaacagaag gacgatggcg ggatggaacc 3120 gacgccccag cagcaggagc caggccttcg ccggagcggc aggaaccccg tgccacgaac 3180 ggttatggat ctgcacacgg cggagaaggc gtacgagcgg atggagtatt ccttgcttac 3240 tgggagtgta ctcggagcca ccgggacagg aagccccggt gaggcgggct acatgccccc 3300 tgacccggcc aactacagcc aagcggtgag tggaccggat gctgacgcgt ggaaagaaag 3360 catgcgtgac gaaggacgat cactggtcga gcatgacgtg ttcgactggg tagacctgcc 3420 ggagggtgct caggcgcttc cggccaaata cctattcaag gtaaaataca accaagaccg 3480 agaacctgtt cgtctcaaga gccgcattgt ggttcaaggt tttcaccaag ctgacacggg 3540 cgaagataag gcagcgcctg tggcgtcgat ggaaacagtt catctatttg tcgctagcgc 3600 tgctcaaaac ggttttgttc taaagcaagc cgacatcaag acggcgttcc tgcatgcacg 3660 ggtccccaag aatgcgaaac cgatttttgt aatccctccg aaaggattcg agtgttctcc 3720 ggaacaagca cggcaggtgt ggctgcttaa ggcgtgactg tacgggctgc gtctctcccc 3780 gaaaggctgg aacggcacct tccacgagta tctgatggag atcggattcg ttcggagccc 3840 ggcggatccc tgtctataca gcctcaacgc gggagaggtt ctcctcctcg tgtacgtcga 3900 cgacatccta ttttcgggga gcgacgagga tctggtgatg acagttatcg aacagctgaa 3960 ggagcggttc gacacggtgt accttggaga tgcgaagttc ctcctcggca tggcgattga 4020 aaggaacatc gacgccgggg tgatcctctt ttcgcagaac acgtacgcga acgccgtgct 4080 tgacaagttc ggaatggccg acgctagctc ggcgaagact ccggctgagc ccggaccgat 4140 cagcatcgtg gaggaggcgg ttctgtctcc agaggacacc acgtatttcc ggtccgccgt 4200 aggaagcctt ctgtatctca gccggggctc gaggccggac attactcact cggtgatggt 4260 actagcgaag agcatggcga agcccggtcc cagagcaatg gtgaagctga agcgggtact 4320 caggtaccta aaggggacga cctccatcgg gatcacatac cgcgaggacg ccgacgacgg 4380 agacaaccta acggcatatg tggattctga ccacgccggt gacctagaca acgggtactc 4440 cactaccggt gttgttttgt actttgcagg tggcccggtg gaatggacgg cgaagaagca 4500 aacggtggtg gctatatcga cggtagaggc cgagtacgtc gcactgtaaa aggggtgcgt 4560 catggtcatc caattccgga acctgctaga gtccatgaat cagaagcagg agcaggcaac 4620 cgtcgttttc gaggataact ctggtgctgt gtcacttagc aggagcgcga aaatcacccc 4680 gcgcaccaag cacatcgatg taaaatttca ccatgttcgg tctcttgtag aaaaggaagt 4740 ggtagatgtc gagtatatcg aaaccaacct gcagagggcg gacatcctca ccaagagttc 4800 gggagctgtg aagttcctgc agaaccgcct tctgttgctt ggagtgtgag catgagttgg 4860 agatttcggt tggaagagca ttcgtatgat aagaagaaaa catttcgctg cttgaaaact 4920 atggcagtta gtgagtatcg ttttttgagt tattcagaaa gcacgtattc gtagacactt 4980 gttcgagagg acactgatat cgttttgaga ggacattgag agagagaaga tcgtgtcttg 5040 tatttcagaa ttagaatgcc gtagctcttg agaggaca 5078 // ID Gypsy5-I_VC repbase; DNA; PLN; 10514 BP. XX AC scaffold_101; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5-VC; KW Gypsy5-LTR_VC; Gypsy5-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-10514 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 114-114 (2008). XX DR Genome; scaffold_101; Positions 197428 207941. XX CC Positions [7850-8314] - Reverse transcriptase CC Positions [9320-9817] - Integrase core CC 'CGGTG' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 7505..10045 FT /product="Gypsy5-I_VC_1p" FT /translation="MLVQSELISGSSASAESLPPDTDIIPEATLQGLLDEY FT KDVFEELKGLPPDREVGHTIPLVEGAVPPAKRSYWLTQLERQEVRKQVTEL FT LSKGYIEPSTSPYGAPVIFVEKANGQGLRMVLDYRALNKITIKRRYPMPNI FT TDLFDQLQGAKIFSSLDLQQGYNQIRITPEDVAKTAFIAPGMGQYQFKVLC FT FGLTNAPATFQAVMNRIFAEHIGKFVLVYLDDILVFSKTKAEHEQHLRVVL FT SLLRKHEFKAKMSKCQFNRTELHFLGHVVSRDGLKVDERKVKVVKEWPVPT FT DASKLRAFLGLANYFRRFIQGYSSLVAPLTTLTSAKVPFHWTKECDTAFQG FT VKDALTNAPVLKLPELDKPFVVWSDASLHGTGAVLLQDDRPVAYTSSKFSS FT AEYNYSTTDQECLGTVLAMEEWRCYLEGASHVTLVTDHQPLVYLQEQKSAD FT KLSRRQARWLERLSRFQFTWEYRPGRINVADPISRVHDTVLNVLTASLADS FT DLGHRIKSGYDGDPNLAKSRVAKLQLKRRNGFWYRGNQIYVPQNAELRRAI FT LTEYHDVPYAGHRGIDRTKQAIAQSYWWPGLDSDVKEHVKSCPQCQRNKPT FT NAKPGGLLQPLPIPTEVWESVTMDLVTQLLTSRNGHDVIVVFVDRLSKMTH FT FAPTHTTATAEDVARLFVATVFRQHGLPKNIISDRDSRFTSNFWKETFRLL FT GTHLYMSTAFHPQTDGQTERMNRVLEETLRHYISPTQDDWDEHLPLIEFAI FT NNSKQKATGTTPFSLNGVRQPRVPVDLHLKTKVPAAQKQEAMLRERISKAK FT KCLLAAQQVQKDDADMHRRPVRYEVGQKVLLSTKNITLKPLELRS" XX SQ Sequence 10514 BP; 2582 A; 2712 C; 2777 G; 2443 T; 0 other; ttggtatcga gcgtcaagtt cgatcctcct tgacgcaatg cgctatagta aggccgcgca 60 aaggcgtttg actaaattcc ttaagcttca aaaatcgtat gaaaggtatc gcgaagcatc 120 ccttcaggaa caggacccta ctgcgaccga ggccactgat tccgacaacg aagacgaacg 180 ccctttggct attcccaata aggaacacca tattaataat attcctgtta attgtccaca 240 gatggacgtt gattctccgg cggaatcgcc atcggatacc gcgcagcgtg cctcgccttc 300 taagggcggg cttccggcgc gtacaccagc acaggctgcg gcagccgcgc aggtccagga 360 aatgcttcgc gcggctcgcg aaaatcaagt ccccgctctt caagcggaat tatcttcctt 420 taagggagag gttcacggca ttctcgccga atatggcgag cgcttgggcg aaataacctc 480 tgccctgaag gatgtccaag cgcagcttcg ggatttgtca ccgccgcctc cgagtacgtc 540 ggacactcgg cgtaagtcga taattattga tggcatctgc gagacgctgg acagcaatct 600 ggccgcgttt ctagacgtgg atatgctgca gaattgcgct ttccaggcgc ttctgcagcg 660 ccaccttaat cccgaagtcc gtttggatga ggtcaagcag ctctggagcg agggcatcgc 720 caagcaagcc ggtggtcctt ctcatgcaat attttgactt gtcgcaaatg gacccgcttg 780 agcactttat gttttggctt acgggcaagg ctcaggagtg ggccgcagat cttttcctta 840 agcacaagtc cagcatgcaa ccacttactc gtgatttgtt gcgtgataaa ttcctgttac 900 aatatgggga tgcgaagcgc gacaccgcca tggccgcacg cgatcgtttg catgcacacg 960 agtacgatat gaaaatagat gagtccgtac cggagtatac gcagcgcttt tacgatattg 1020 ttcgcgaagc gaatgacatg agtgttgtgg atcaaatctc ttggtatatc aagggcttag 1080 ttcctgcgct gcgcggtcgc tgcgctatgg acgatgaggg taaagattgg caggatttag 1140 agaagctaat cctgtatgct agcggtcagg aggttcggtg gaaagccgga aaggacaaag 1200 cacagcttgc tgtagttact acacaagctg gcccgtctaa gattacttcc tcctctcacc 1260 ctaagcaatc tcgccctcgg tccccttcca aacaggcctg ggaaacggtt cgtgcgaaga 1320 aaccgcggac gtcaacgtcc ggtactcttc tcaagtgtcg gatgtgctct cgcctcaaac 1380 cggcaaacca gacttgggaa gagcacaaga aggtctgcct tcaccacctg caggagcaga 1440 tggcccgact gcaggagaat agggttggca cgggtactat actagaaaag agtactatac 1500 tataatagta ctatatatag tactatttac tatgcagggc tctagactgg tactagttta 1560 cgacgctcgt accgcgttcg tacatagtaa aatagtatag taaaaatagt actatatagt 1620 actagatttg gggttggata gtgtccagta ctagttggac caagtcgaga tctgcagtca 1680 agctgtattt tgaagggcta tagccgcgtc ttcgagctgt gctacgtagt tattgatgaa 1740 taatatcaaa ggaatccagt ataaaggatg agaaggcgat cagaggcttg cttcctggtc 1800 cagacgtccc gtctgaagtt ctccgttctc ggaacgagct ttttaacaag cttcgtaacc 1860 agaagaagaa cgccaagacg ggtagtcatt gggacaactt caatgtggag tggtggggtg 1920 gtgtaccaaa gctagtctgc ctgttctgcg atgagccgct cagcgcagtg aacccatcct 1980 ttaccaacgc gcaccacatc aagcaaggtg cttgcaaggc tatcaaacag cgtgcagcgt 2040 cactcagcca gcaacagcaa cagagtggaa ccagctctgc tgcggcgggc cccagcacgg 2100 cggatcagca ggccctctcc aagcgccggc gcggcattga tggccagacc ctcctcccag 2160 tgattcccgc gactctcacg gggcaagtcg tggaggagct tggcatgttc ttctacagga 2220 acaacgtgcc tattcacctg atcgagaagc ccgagttgcg gaacctattc gggctgctgg 2280 gcgtcaccct gccgaaccgg aagcagttga tggggccaat gctggaccgc gcctacagca 2340 aggttaaggc gcaggtggcg caggtcaggc agcgcatgtg tggccaagct gcactctgct 2400 cagatggctg gcgcaagcgt gccgctgagc agggggtgcc gctcatcaac ttcatgctgc 2460 tgctgccaac gggctcggcc ttcctgcgtg tcgtgcgtgc agctggtgta cggaaggacg 2520 cgcagtacat caaaaaggta cgttatgtgc ggatatgttt agtctttggt gccgtctgcc 2580 gtgatcgtaa tttattgaaa ccgtacttaa gctaattaac ctgcactgca gatccacctg 2640 gatgtggtgg cggaagcgtt caccaagcct gacgactgca tcggcttcgt aatggacaac 2700 acggcgacca acctggccgc catccagctg ctgcgcattg aaaacccccg ctggctgggt 2760 gtgggctgcg gggtacacgg catggcgctt gtttttaagg acctggcgaa ggagaagaac 2820 gtcaagtggg cggccaagat cttcaacgct tctatcacca tctccacagt ggttggcgac 2880 tcggagcgca tccgggcttt gctgggcgtg caccagatgg agaagtacgg caagaagtcg 2940 gccattaccg ccaacacccc aacccgcttc gctgtgaact attttgttct aagtgacgtg 3000 ctggcgaatg aggatgcact gaaggccatg gtgcgcaaca aggaggcgtg ggctggcgcc 3060 agcgacggca cctcaaaggc gcaggagttt aaagccatgg tcgagggtga gggcagttcc 3120 cggaacttgg gcctcttttc gaagggcgcc aagctggcgg agttttgcga gcccatttcc 3180 aaggcgctgc acaagctgga gtgcgacaga ccgatgctga gccaggtgca aagatgattt 3240 aagggtttgg gcgaaaggat gtgtgtccca tgtttgcccc agaccccatc aggcatcacc 3300 tttcactcag tgacccgtcc cccatacgct tcccatgttt tctcccatcc ctcccagatg 3360 tacccggtct ggaaggccct gcttgcaaca gcaagggact ttgatgaggc aaacaccgac 3420 tgcccagggc tgtacgacct gctgaaacgg cgctacgaca agcaggtcaa cgcctgctgg 3480 tttgcagcat tcctgctgga cccgcgcaat attgatgtgt cgcttaccaa ccggtacatg 3540 ttaccgctcg gccagctgga gctggaggag aagtcagcgg cgaaggtcct aatccaggat 3600 ctggccgcag gcaaagatgc agctaagcgg gaccgggttg gggaagagtg gacacgcctg 3660 ggactgggca ttcccaaagc gttcgatgag tggtctgagc ttatgcgcat gcacaaggag 3720 aaattgttgc ctgacagcag cacccgtgtg atgggggctt cgctggatga ctgcatcagc 3780 tactgggatg tgcacctcgc cgcacaattc ccactgattg catcggcagc cattcgcttg 3840 ctgctgatgc acgcatcaac ctgctcgtcc gagcgcaact ggtcggcatg gggcctcgtc 3900 tacacgaagg cgcgcaatcg gctggccatt gagtgggcgg agaagatcgt ttacatccgt 3960 ggcaatgcag gcttgcaggg caaccaaggc gctgcggcgg atgaggtgga gctgattctc 4020 cagcagtgcg aggaggacga gcaggagcag gaagcacagc agcagcagca gcagcagcag 4080 ggaaacgtac accctaacac gcagattgat gactgagcaa cgatagattg agctgcggca 4140 gtttgctgaa ttggagggtt acatactggg ccgttgtagt gcaggaactt cactagtatg 4200 gcgtccttgt gttgtcttgt caacgctggg tcttctatct gtgattatgt ctttatgtgc 4260 cataacacgc cttgagacat ggggtttgag gtccacctac cgggcaccga agtaacaaaa 4320 agtgttctgg atgaccacag cgatctgctt tctcatgtct aagtaaatat tcagaaagaa 4380 caaaagaaga cctttccaac ggtgtaattt tcaggtacaa cggttggtcg tacacccccc 4440 ttctacaggg agcttgtacc tgcatagtaa tagtatcata gtactatatt actatatata 4500 gtactatttc atactatact atactatttg ggaaaatcaa tatagtattt ttgccaaccc 4560 tacaggagaa gacggctagt ttaaacgcga accgaccggc taattaggat gctggcaagc 4620 gcgagggggt gtcttgcaag caggccgtta gtgctgtagc acctgtagac gaagtctctt 4680 ctgccgagcc tgacttgaag attagggact ctgttgttcc gcccgtttgc gatccgttga 4740 tatgtgatcg gatgttcctt cgtgatgaat ttcgaagggt tgagaacgaa cttgggcgtc 4800 aatttacgtt cgatgccgct tgtaacgact cgggcgacaa cagtctctgt tcgcgctttg 4860 cctctccatc caactcgttc tttgataccg acgtctctgg cgagtttgtt tggatcaatc 4920 ccccatacac tcatattaaa gaatggcagc aacattacca ccgctgtaag ctaaaaaatc 4980 ctaaaacaac ttctgcggtg ttcgtcgttc ctaaggacgt gttcacatgt gggcgaatca 5040 gggttgattc atgcgaattg gactctgaat tgaacctgat tggacccgaa tcggaattgg 5100 ggtccggggg ggcctcttcg ggtatgattc gacgtgattc acagttttct ttctcaaaac 5160 aaagttgttt aacaaaccgt ttctcataat taccattaca atactatagg aacattttcc 5220 aattgttaat tcacgcaaag cgcaccgagc atttttcacg aactcctgca gctatgtatg 5280 tacaagcctg gtgataattt tcgccataga aacgatactt atactgttct gttcctagat 5340 aatgctggct tgccttgggt gatggggcgt agccgcggag cttcagctgg gcgcggtggc 5400 acctcgcgcg gtggccgcaa tcgtatgtga acacaattca gaaagccgcc ccgaatcgga 5460 ctcccaatca gactctcaat tggactacat gtgaacacac cctaaatgga ctcaagtcga 5520 gtgtcttatg cgttccgctg gataccagct actcaaaact tatgctgttg gaacacagtt 5580 gttctcccaa ccagtagacg ttggaacgcg ttcggacttg ccgggcatcc cttggccatt 5640 acagctttgg tatgacccgc cgtccaaatc ggtgcagctt aacagcttgg atagcaatgg 5700 ccgcactatg ctttttgatg ctcgcttgtg tcaaacggct tgcaaagttc ttgccgactc 5760 cggtgccaat tgcggccgag ttgccgacgg cttcatttct ctcgaagctg tccgcaggat 5820 ggctctttct gtccgtcctt gcactatctc tactgttcgc gtcgcgaacg gaactcacga 5880 gcttatcaat ggctcgatta ccgctaagct ccgtataggc tcctttcatg aaacagtcac 5940 actacttgtt ttaaagcaag gtgttccagg cgttgaaatt attctcgctg atgactggtt 6000 ggagcgcaag aaagcgagaa tgtgttggga atcacacacg cttacagtgc ggaaagctac 6060 cggcgatcag tgttcgggcc gaaacggaaa cctgccgaaa cggaaacctg ccgaaactag 6120 tttcggtgat tccggcgaag aggtcctggt tctgcggaaa tgccgaaact agtttcggcc 6180 cctttcggct agcgccgtac ggcggaacct actttgaata gtttcaaagt gtaggcgcgt 6240 tgtgcaaggc tgcgaaactc tgcgaatgtt gagtttatct tatcaatgtc tcagacaact 6300 tctgttgtca gtgcagacac agattcggtc aaaaacaagg gcggaaggac cgctgatcag 6360 accgtttggg ctcactttga gaagaaaaaa tataatgcaa agtgtaagaa ctggactatc 6420 atctgcaagt actgccggac cgagtccaag caagggcgcc ttcaggagat gcgcgtccat 6480 atcgcgcaaa agtgcgcggg acccgtcccg cctgaggtcc ggcacgagct gcaggcagta 6540 gtgaccaagg acgcctgcag cgcctcgact cgcaccttga cacgcaagga ctgccagaca 6600 acgctgaagc agcacttcgt gtagcagctg accgctgaaa aggtctctcg agttgctggc 6660 ggtcgcgctc tgcgcgtatt tatagcaccg tactgtgtac cggctgctac attccccccc 6720 ctttgaaggg aaccgtcccg ggccctttag agcctcgtat accgccagcc tgtgcctacc 6780 ttctcctacc ctcgggcagt ggggtgacca agcccacgtc acgtcatgtg cccgcttcac 6840 atgcgcctag ccttcaggtt tttcaggcac agagacagtc cagtcggttc agctactttt 6900 gttttatagt tttagtgcga tattcgctca ctgagtcgcc acacccgaaa taccactcga 6960 acgtgatcgg tgggggttga accgacgact tcaggatcgt gaattttcac gaggtctcga 7020 taccaaatgt agcagctgac cgctgaaaag gtctctcgag ttgctggcgg tcgcgctctg 7080 cgcgtattta tagcaccata ctgtgtaccg gctgctacac ttcgacaggg cacaggtccc 7140 atgaggcgca aaggcacata gggcccacga acaacgtttg cataccatgg acgtcataaa 7200 atacagcatt ttcagggttt cggcaggttc cggcaggttc cggcaggttc cggcaggttt 7260 tgcagaaggg tccaaaaaac ggaaactatt tcggcattgt cagtaaggtt tcggcccgta 7320 cactgccggc gatactgttg tcctgaggcc ttccttttgg tcttcagcag acgacgacga 7380 tcacctagat ggtattgcca tcatgaatta cgttaccgcc actctctatg ctgcgagtac 7440 ggtggaaatg atgtcagcta aagcagctgc agggaggatt accaaaggcg catgaagcta 7500 tttaatgctt gtgcaatctg agctcatttc tggatcctcg gcgtctgcgg agtcacttcc 7560 tcccgacacc gacatcatcc ccgaagcaac attgcagggg ttgcttgacg aatacaagga 7620 cgtattcgaa gagctcaaag gccttcctcc agatcgcgaa gtaggtcata cgattccact 7680 agtggaaggg gctgtaccgc ccgctaaacg atcgtactgg ttgactcaat tagagcgcca 7740 agaggtccgt aaacaagtca ccgaattgtt gagtaagggc tacatagaac cctctacttc 7800 tccttatggt gcgcccgtta tctttgtgga aaaagctaac ggtcagggcc ttcgcatggt 7860 cttggattac cgtgcattaa acaaaatcac gatcaagcgg cggtatccta tgccaaacat 7920 tactgacctc ttcgatcaac tccaaggggc taagatattt agttccctgg acttacagca 7980 gggctacaac caaattcgca ttacaccaga ggatgttgca aaaacggcct ttatcgctcc 8040 gggaatgggc caataccagt tcaaagtgct gtgctttgga ctcacaaacg cccctgctac 8100 gttccaagcg gtgatgaatc ggatctttgc cgaacacatt ggcaaatttg tgctggtgta 8160 cttggacgac attctggtct tcagtaagac caaggccgag catgaacaac acctaagggt 8220 ggtgttgtcc ttgcttagaa agcacgaatt caaggcaaaa atgtctaagt gtcagttcaa 8280 ccggaccgaa ctgcacttcc tgggccacgt agtcagccgt gacggcttga aagtagacga 8340 gcgcaaagtt aaagttgtga aagaatggcc ggtaccaacc gacgcctcta aacttcgcgc 8400 gtttcttggc ttagccaatt attttcggag gtttatccag ggttattcct ctctcgtggc 8460 ccccctcaca accctaacaa gtgcgaaagt gcccttccac tggacaaagg agtgtgatac 8520 tgcctttcag ggtgtgaaag atgccttgac aaacgcacca gtattaaaac tccctgagct 8580 tgacaaaccc ttcgtagttt ggtctgatgc gtcgctgcat ggcactggcg ctgtcttgtt 8640 acaagacgac cgaccagttg cttatacaag ttctaaattc agcagcgcgg aatacaatta 8700 ttccaccaca gatcaagaat gcttgggcac agtcctggct atggaagaat ggcgttgtta 8760 cttggaaggt gcgagtcatg tcaccctagt aacggaccat cagcctttgg tctatctgca 8820 agagcagaaa agcgccgata aactttccag aaggcaagct cgttggttgg aacgattgtc 8880 tcgattccag ttcacttggg agtaccgacc cggacggatt aatgtcgcag accctattag 8940 tcgggttcac gacacggtgc ttaatgtgct cacggcctcg ctggcggaca gcgacttggg 9000 acaccgaatc aaaagcgggt acgatggtga tccaaacctt gctaaatcaa gagtagccaa 9060 gctgcagtta aaacgaagga atggattctg gtatcgggga aaccagatct atgtccctca 9120 aaacgctgaa ctgcgaagag ccatcttgac cgagtatcat gatgtccctt acgcaggcca 9180 ccgcggtata gaccgcacca aacaagcgat cgcacaatca tattggtggc cagggcttga 9240 ctctgacgtt aaagaacacg tcaaatcatg tccccaatgt cagcgtaaca aaccaacaaa 9300 tgctaagccg ggtggattac tgcagcccct tcccattcca acggaggtgt gggaaagcgt 9360 gacaatggat ttggttacgc agctactgac atcccgcaat gggcacgatg tgattgtagt 9420 gttcgtggac cggctgagca aaatgacgca ctttgctccc acacacacaa ccgctacagc 9480 tgaagatgta gcccgcctct ttgtggctac cgtcttcagg cagcacggcc ttccaaagaa 9540 cattatttca gaccgggact ctcgcttcac aagtaatttc tggaaggaaa catttcgcct 9600 gttgggcacc cacctctata tgagcacagc tttccacccg caaacagacg ggcaaacgga 9660 acgcatgaat cgcgttctgg aagagacact caggcactac atatcaccca ctcaagatga 9720 ttgggatgag catttgccac tgattgagtt tgccataaac aactccaaac agaaggcaac 9780 ggggacaact ccgttttccc tgaatggtgt tcgacaacca cgtgtaccgg ttgaccttca 9840 cctcaaaacc aaggtgcctg ccgctcagaa gcaagaagcg atgcttcggg agcgtataag 9900 caaagctaaa aagtgtctct tggctgcgca acaagtccag aaggacgacg ccgacatgca 9960 taggcgtcca gtgcgttacg aggttgggca gaaagtgctg ttatctacca aaaatattac 10020 attaaaaccc ctggaactaa gaagctgatg cccaagttca tcggcccata cacggttgtc 10080 gcacgcgtgg gtgaagctgc ggtaaaactg gacttaccgg cggcctcccg cctacacccg 10140 gtcttccacg tctctttgtt gaaattgtac aaagaagacg taaagcgaca gccgccggcg 10200 ccactcgtca ttgagggtga gccgtatttt atggtcgaag ctattgtcga ccatcgtgat 10260 gtttcagtcc gagggggacg tggaaaaaca cgtcgagagt atttaatcaa atgggaaggt 10320 tacgactcta gtcataatac ctatgaacca gaggaatccc ttcgccagtc tacccccttg 10380 gctgaatcca tcgacgaata tgaacgcaaa ctggcgtcta agaaacaccc tcaagccccg 10440 gaaaaaccca agggacggaa atcttctaag aagaagtgac gctcccggga cggttcgctt 10500 cagagggggg agac 10514 // ID Copia-9_PR-I repbase; DNA; PLN; 5442 BP. XX AC AAQX01001520; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-9_PR_; KW Copia-9_PR-LTR; Copia-9_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5442 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001520; Positions 54967 49526. XX CC Positions [1868-2377] - Integrase core CC 'CCACA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 29..4441 FT /product="Copia-9_PR-I_1p" FT /translation="MGKGHTRSGQILGLEKFNGEDFTVWKDKVLTHIETLD FT EVYQRALLEKDQPRATVVMMDFLESTPEKPVITVEGEVTQQEAKNLRWRYQ FT HWTRAHAELKNLFNQALPNVFLSVLEDQVSRMQPCDIWKELEQKFGLGDAG FT GVIELLRQWERLTTANWSNLGALFGQLKKLRNDVNRKMRGLVGKDMITEPW FT LCMQVLALLPSEFWGSSVSMTAEWFTIENVEMSLRRVFGDRSKKEINMLTD FT KRRPLSINVAKRFTGKKRSQDEALGQQAKDCFYCFETGHWKKDCPAMAADR FT DPNRHGGTLFRSNIRTAPGAKKKRLLTVKKGPKSTTKSTAVAQREERTPAE FT DLAFDRQLEKAIKDADEFEFKDPIPLSEGSENEAPMNSMDIDSEVRKRYPG FT YLYRLKQLKVTDNLWVVDTGAGHAISSERRWFSHLGKGRTHTFEYGNRGTS FT SSELQGTVRFSVLKPGSYYSTISIQNVAFDTNCSSNLLSAYYLATQGYHHI FT QAKNGEYLYFLDSKNRFIFAAVAIDEVYYLPSRPQKVNTKVLSVGTNTRLN FT IQNTLKEWHLRLGHVGKGRLVNILAGNAIKDAPQLSRREMENVPFFCRTCE FT LAKSRRMSYRNMVGEKAPAPLHTLHMDSVGKIRPQGLYTTSGHKYALAVVD FT DATAYKWYFVIKSLKEVGTIVKVLIKQLEKQLPYTVKRIRTDGGTEFVNTV FT LKNYCNRNGLVYQQSNVESQEENGSAERAHQTIMGKARCALIGSGMAAKWW FT PEALKYMTIVNNRIPTARLRGKCPYEALFGTQPTGMRLRIWGSTCYAHVPK FT TKRANQKLSERSIECKLLGLSESYKGYRLLDVKGNRYLNARDVTFGATYTE FT GLISRSFPSGQIESNKECFLEICELGKRESEINTNVPKKRQRTDNEEVEAG FT GGTETVGAVNQRVSVPPIPRSRRKRQPSSRLRDYIVSINAVTISTKVIPIP FT RSIKEARRGPHAEQWETALQTEYQALVANDTWEVVHLPKGRKILGCHWVFD FT VKYNPDGTVERFKARLVVRGNTQIHGVDFDEIFSPVARYESLRLLLAIATI FT KDFHVHQMDVSTAFLNGSLFEEIYMQQPHGFRHGDASRVCKLKKSLYGLKQ FT APRIWYALLNKFLVSIGFCRCKKEYCLYRQKWEVNGVTHVVLICVYVDDIT FT IAASDMKLMQKVKAKLASRFTMKDLGDIHYLLKMEIKRNRANRILSMSQHK FT YIMDLLQKFEMSESSTEPTPQTKSVVLEKEEELNPEQIAAQPFDYRGLVGS FT LMYLVRGTRPDIANAVRELSKFLSCYNKSHYKAAQRVLKYLKGTSMYGLVF FT DGKSKEVIYELYTDASFANANENRKSVTGYVSIMADACITWKSSRQSTVSL FT HTAQSELIAASEGVKESEWLWILLEELGFKQTQPIVCWCDNKGAISIIKDP FT ANHTSTKHIDIKGLYAREVHDEGRIVVSYYNTNDMIADALTKALPQTQFEN FT SGILWA" XX SQ Sequence 5442 BP; 1739 A; 1036 C; 1412 G; 1255 T; 0 other; tttcagatac gtactaagac gtaaacccat gggaaaagga cacacgagga gtggccagat 60 cctggggctg gaaaagttca atggagagga cttcaccgta tggaaggaca aagtgctgac 120 gcacattgaa acgctagacg aagtttatca gcgcgcgttg ttggaaaagg accaacctag 180 ggctacggtt gtcatgatgg acttcctgga atccacgccg gaaaaacctg tgatcactgt 240 tgaaggggag gtgacgcaac aagaggcaaa aaatctgcgc tggcgttacc aacactggac 300 tagggctcat gctgaactga agaatctctt caaccaggca ctgcctaacg tctttctgag 360 tgtcttggag gatcaagtgt caaggatgca gccgtgcgac atttggaagg aattggagca 420 aaagtttggg ctcggagatg ctggaggcgt aatcgagtta cttcggcagt gggagcgcct 480 gactacggca aactggagta acctgggggc gctgttcggc cagctcaaga aactccggaa 540 cgacgtcaac cgcaagatga gaggattggt cggaaaggac atgattacgg agccgtggtt 600 gtgcatgcaa gtgctggcac tccttccaag tgagttctgg ggcagctcgg ttagtatgac 660 agcggagtgg ttcacgattg aaaatgtgga gatgagcctc cgccgcgttt ttggagatcg 720 atcgaagaag gagatcaaca tgctgactga caagaggcgt ccgttgtcta tcaacgttgc 780 aaagcggttc acgggcaaga agcgaagtca agatgaagca ttgggacaac aagcgaagga 840 ttgcttctac tgcttcgaaa ccggtcattg gaagaaggac tgcccggcta tggctgcgga 900 tcgtgatcca aaccgacatg gtggaacgct gttccgctct aacattcgga cggcacctgg 960 cgcgaaaaag aagcggctgc tgacagtcaa gaaagggccc aagtcgacta ccaagtcgac 1020 agcggttgct caacgcgagg aaaggacacc agctgaagat ttggcgttcg atcgccaact 1080 ggaaaaggcg atcaaagatg cggatgaatt tgagttcaag gatcctatcc ctttgagtga 1140 aggaagtgaa aatgaggcgc ccatgaactc aatggacatc gactctgagg tacgaaaaag 1200 atatccagga tacctctata ggctgaagca actaaaagtg actgacaatc tgtgggtggt 1260 tgatacaggg gcgggtcatg caataagctc ggagcgtagg tggttcagcc atcttggcaa 1320 aggacgaacg cacacatttg agtacggcaa cagagggacc tcgtcaagcg aattacaggg 1380 aacagtgaga tttagtgtac tcaaaccagg gagttactac agtactatct caatacagaa 1440 tgttgccttt gatacgaact gcagtagtaa tctgctcagt gcttattatt tagctacaca 1500 agggtatcac catattcagg ctaaaaatgg agaatattta tatttccttg atagtaaaaa 1560 ccgattcata tttgctgcag tagcaattga tgaagtatac tatctcccta gtcggccaca 1620 gaaggttaac accaaagtac tatcggttgg cacgaatacc cgactgaaca ttcagaacac 1680 gcttaaggaa tggcacctga gactaggtca tgttgggaaa ggcaggttgg tgaatatcct 1740 ggccggaaat gctatcaaag atgcaccgca gctgtcacga cgagaaatgg agaatgtacc 1800 cttcttttgt cgtacctgtg aactggcaaa atcccgacga atgtcgtata ggaacatggt 1860 gggagaaaag gcacctgcac ccttgcatac tctgcacatg gattcagtgg ggaaaataag 1920 acctcaaggt ctgtatacta cttctggaca caagtatgct ctcgcagtag tagatgacgc 1980 tacggcttat aagtggtact ttgtgataaa gtcactcaaa gaggttggga ctatagtaaa 2040 agttcttatt aagcaattgg agaaacaact cccatataca gttaaaagaa taagaacaga 2100 tgggggtact gaatttgtca acactgtttt aaaaaattac tgcaatagga atggtcttgt 2160 ataccagcag tccaatgtgg agtctcaaga agaaaatggc tctgctgaac gagcacacca 2220 gacaatcatg ggcaaagctc gatgcgcttt aataggatcc ggaatggctg caaaatggtg 2280 gccggaggct ctaaagtata tgacgatagt gaataataga atacccacgg cccggctcag 2340 aggtaagtgc ccatatgagg cattatttgg cacccaacca acaggaatgc ggctcagaat 2400 atggggtagt acatgctacg ctcatgtacc gaaaactaaa cgagccaatc agaagcttag 2460 tgagagatct atagagtgta aactacttgg tctttccgaa agttacaaag gatatcgact 2520 actagacgta aaaggcaata ggtatctaaa tgcccgagac gtaacttttg gagcgacata 2580 cactgaggga ctgatctccc ggtcattccc atcaggacaa attgaatcaa acaaggaatg 2640 tttcctggaa atttgtgaat tagggaaaag agaaagtgaa ataaacacaa atgtgcctaa 2700 aaagcggcaa cgaactgaca atgaggaagt agaggctggg ggaggtacag aaacagtggg 2760 agctgtgaat caacgtgtat ctgttccccc tattccccga agtcgtcgca aaaggcaacc 2820 tagctcccgc ctcagggatt atattgtatc aatcaacgct gttacaatca gtacaaaagt 2880 gataccaatt ccaaggtcga taaaagaagc aagacgaggg ccacatgccg aacagtggga 2940 gacagcattg caaactgaat atcaggcatt agtggcaaat gatacatggg aagtagtaca 3000 tttaccgaaa ggacgaaaaa tattagggtg tcactgggta tttgatgtga agtacaaccc 3060 agatggcacg gttgaacggt ttaaagcacg actagttgta aggggaaata ctcaaatcca 3120 tggtgtcgat tttgacgaga tattttcacc ggtagcgcga tatgaatcat tgcgactact 3180 actggcaata gcaactataa aagattttca tgtccaccaa atggatgtat ctactgcgtt 3240 ccttaatgga tcactatttg aggaaattta tatgcaacaa ccccacggat tcaggcatgg 3300 agacgcgtcc cgcgtttgca aattaaaaaa gagtctatat ggactaaagc aagccccgcg 3360 tatttggtat gcgctcctaa ataagttttt ggtaagcata ggcttttgtc gatgcaaaaa 3420 ggagtactgt ttgtaccgtc aaaagtggga ggtaaatgga gtgacacatg tagtactcat 3480 ttgcgtttac gtggatgata ttactattgc cgcgagtgat atgaaactga tgcaaaaggt 3540 gaaggccaaa ttggcttcga gatttactat gaaggacctg ggtgacatcc actacctttt 3600 gaagatggag atcaaacgga accgggccaa taggattcta agtatgtcgc aacacaaata 3660 tattatggat ctactacaaa agtttgaaat gagtgagagt agcacagagc caactcctca 3720 aacaaaaagt gtggtccttg agaaagagga ggaactaaat ccggagcaaa tagcggctca 3780 accattcgat tatagaggtt tagtggggtc actgatgtat cttgtaagag gtacacgccc 3840 tgatatagca aatgctgtca gagaattaag taagtttctg tcatgctaca ataagagcca 3900 ctacaaggct gcccagagag tactaaagta tctgaaagga acgtcgatgt atggtctcgt 3960 atttgacgga aagagtaaag aagtgatata cgaactgtac acagacgcga gcttcgcgaa 4020 tgctaatgaa aacagaaaat cagttactgg gtatgtgagt attatggcgg atgcgtgtat 4080 tacttggaaa agttcaagac aaagtacagt gagtctccac acggcacagt cagagctaat 4140 agctgccagt gaaggcgtta aagagagtga atggttatgg atattattag aggagctggg 4200 atttaagcaa actcagccga tagtatgttg gtgtgataat aagggagcta ttagtattat 4260 caaagatcca gctaatcata catcaactaa acatattgat attaaaggtc tatatgctag 4320 ggaagttcat gatgagggaa gaatagtagt gtcatattac aacacgaatg atatgatagc 4380 agatgccctc acaaaggcac tgcctcaaac tcaatttgag aactcaggaa tcttatgggc 4440 gtaaagaact tgagtcttat tatacctcac taagtgttgg accactcgca tcaagagaca 4500 agagacatct ttcaagttga agtgcaaaac caaggctcaa agtgtaagaa caaggcgcaa 4560 gttgaagtgc aaagccaagc cgagaagtgt aagaacaagg cgcaagttga agtgaaagat 4620 agagctgagg ttgaagtaga tcaaggacaa tacttttgag tttaaaggca acaaaagacg 4680 caacgttatc atattggtta actaacagtt gcactaaagc tcaatggtta aagactagac 4740 tacgacacac catgataaca tggtgcaaac acagcaagag caaccgttga ccgcatctgg 4800 gaagggaggg gcaagccccc accatgcctt ggagatctat gctctagcgc tccccaaact 4860 ctggatggta gtaccgcagg actagcctgg gcgttgtaac tgcgtttgtc gtagccccca 4920 cgagggattg aaagcggcca aaggcgctaa gtcgaaccag aacagtagat tgcaaaactg 4980 aaagtgaatg agctgtggcc aagcgctgct ggcaaagggc gtaaaggaac ggtgcaatag 5040 agacagaaat cataaggtca taaagaaatg ggtatttgat gggtcccaaa ttttgtggtg 5100 tttcaaattt agggaatagg tcaatgtaat gttccgtctc aaaaattgag tggtgcaaat 5160 taaattgggg ccacaaattt tggatcgcct gatccacgaa aagtcgcgac acgaaaagtc 5220 gcatgttatt tttgaagggt cgcagcctta tttaggatag gacaaggcat atgcgataaa 5280 atatgggata ggaaagatgt gcttacagta ggggccacag tatttggtcg aaaagtcgca 5340 ttacgaaagg tcgtatggta ttctggaaat attacagaat aggggacatt tcacatgtga 5400 tcattgaaag gataggagat gtgcttgaac ttttagtggg ag 5442 // ID Gypsy-9_ES-I repbase; DNA; PLN; 8527 BP. XX AC CABU01008302; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_ES_; KW Gypsy-9_ES-LTR; Gypsy-9_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-8527 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01008302; Positions 17554 26080. XX CC Positions [5378-5869] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 75..1985 FT /product="Gypsy-9_ES-I_3p" FT /translation="MPKTSSQKRRDLRDEVREANALVADKNAALARQAQEL FT EELRKQLGVTVSPSPLISETPGRGTPSQRVSAQRPSQGDHSQQESIPEEDE FT PGTGEEKGATPENSDNGGDEEHDGDEEWANQSERHIMYQLLEGFRSQDVSA FT DDRQALMTSAGGQFADMLSRHWKEQSNPPEWLVSLFRPTATPPTTTPASAA FT EVAQVNTSSTARSSIPVEGNQSSGGSTSPDLVYRQPILPAVTQNTPVHPRN FT LAPDLTSTPDSQDSDYRPSNPVAPELAPTPDSQDSAHRTSNPVALSTPPLA FT RFSMPTSTPTSTHTSGHTQKFTFRQNDLPKEISFSGTPGDSDVVEILTRYR FT ARVKLASVAADDPPESVVDQRAIQFLPFVIRGQAYDTLVELVSGTLEWRSA FT HRLTALRNTGQVVRPRAPATWDEYCQAFTFHFSAPNRIAVLAREIAVLRQE FT GETTVDAFALKVTQARTRLLAEAARSGPSHISHYEHAWDVFMTATFENGLK FT PHIRVECVREDPPNSFQDARLRAKKHEANNLRGAASPTSDTVSAVAYPEPP FT QLKQTVSSNTAVIKDLQAQVTRLKLMRAPTKTSSSQGASKKARTTGKGSSS FT SATKAEPCPYPGCKFNHPIEQCGLKKKHALEKGWTWTKA" FT CDS 2327..4246 FT /product="Gypsy-9_ES-I_1p" FT /translation="MPFIHNTERHASVSSASSGGPTYAAFHASALSKYPQH FT PNALNSSSKRVRIPARGCNHAVSDLTIDTAADVPCISASLIKSHPVLQRLP FT LKPVPPGAIQLNSADGSALEILGYIRFKLTLGDITIPVEALVLPNLGPDKM FT LLDNSIMNAFGAVLDWCGEQLSFKNSTRKIPATHRRTNSQADTNNDAPAQI FT SIVTLDPSIGAVPVYLSRRYCIPPESEMALDVVTKHAPQANTPALIEPRIV FT TAKDIETSQNIPEAFRTIVVARTVCNWSATDKSAAIQVANPSKRHVHIARD FT TILGYISPVKSVADKTVSAVNSDQTTFRHKRDELKRAMKKAFTNTTFTPQQ FT CSEVLDLCANYRNVFSLSPKELGKCKIAKADFPLEPGTKPVDRAPYRTNPR FT AQEVIDKCVEQMEDEGIIEQRPSSWGSAVTIVAKADDTPRFCVDYRSTINK FT SLIRKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQEKTAFVT FT YKGKWVFKRLPFGIANAPFLFARMMSLSCSHFGPRSGRLVYMDDIICCSSN FT WESHLTLLESMLQALQAAGLSLKPSNVQFGPQEVKYLGHILSAKGIRVGEY FT RIKSIVDLPAPKTIKALRSVLGMVNYVRKFSTRPFYGDRTAS" FT CDS 5069..6157 FT /product="Gypsy-9_ES-I_2p" FT /translation="MSYYFVRDGLLFKSYLPGYLRKRSTFSDQLVLPYALT FT GLVLHAHHDHVLSGGHLASRPTYEKIRQKYWWPTMNRDVRTWCKECQACQR FT RKTAHNRNKLPTGHVPVQRPFERISVDLVEYKVESVSAAGVRCKYVLSMMD FT HLTRFTVLTPIPNKSAITVAQAIIDRIISIFGSPELLHADQGPEFENSVVH FT QLQRILNYKKTRTTPYRPQGNSVSERVHATMHAMLAMHSSMNRDNWASLLP FT FVQLAYNTSFSSTMHETPFFLMFGRKPRLPVDIILGIPHVGTTANTEEFSK FT TTQENLQIAFELARRNLSERTKKQAAKNAKLRPIPAFKPGDLVVVYRPYQD FT SDGPNPKLLLPWRGPYVICS" XX SQ Sequence 8527 BP; 2386 A; 2162 C; 1942 G; 2037 T; 0 other; ttggcgtcga ctagaacagg gctccgccgg gactactgta gcgaggagag acaactaaga 60 aaaagagaag caacatgccg aaaacctctt cacaaaagcg gagagactta cgcgatgaag 120 tcagggaggc gaacgcactc gtcgctgaca agaatgcggc gctggcgagg caggcgcagg 180 agctggagga gctgcggaaa cagctcggcg tcactgtttc cccgtcaccg ttgatctctg 240 aaacgccggg aaggggcacc ccctctcaac gcgtgtctgc gcagcgtccc tctcagggag 300 accactccca acaggagtcg attcccgaag aggacgagcc gggcaccggt gaggagaaag 360 gagccacccc ggagaattcg gacaacggcg gtgacgagga acatgacggc gacgaggaat 420 gggctaacca gagcgaacgg cacatcatgt accaattgct cgagggcttc cggtcacagg 480 acgtgtccgc ggatgaccga caggcgctca tgacctccgc tgggggacag ttcgctgaca 540 tgctctcccg ccactggaag gagcagtcga atccacccga gtggctggtg tccctcttcc 600 gtcctaccgc aactccaccc accacgactc cggcctctgc agcagaggtg gcccaggtga 660 atacttcttc gacagcacgt agcagtatac cagttgaggg aaatcagagc agtggaggta 720 gcacctcccc cgacctagtt tatcgtcaac caatcttgcc cgctgtcact cagaacacac 780 ctgtccaccc tcggaaccta gcccctgatt taacatctac tccggatagc caagacagtg 840 attacaggcc tagcaaccct gtagcacccg agttggcccc tactccggat agccaggaca 900 gcgcacacag gactagcaac cctgtcgcac tgtctacgcc cccgcttgcg cgtttttcta 960 tgcccacaag cacccctacc tcaacgcata catcgggaca cacccagaag tttacttttc 1020 gccagaacga ccttccgaaa gaaatatcgt tttcggggac accaggagat tccgatgttg 1080 ttgagattct gacccgatac cgagcacgtg tgaaactagc ctctgttgca gcagacgacc 1140 cgcccgaatc tgtagtagac caaagagcga ttcaattcct ccccttcgtc attcgaggcc 1200 aagcctatga cactttagtg gaactggtta gtggtactct cgaatggcga tcggcacacc 1260 ggttgaccgc acttcggaac acaggacaag ttgtcaggcc acgagcaccg gcaacttggg 1320 acgaatactg ccaagctttt acctttcatt tctccgcgcc caaccgcatt gcggtattag 1380 ccagagagat agccgttctc aggcaggaag gagagacgac agtggacgcg tttgcgctga 1440 aagttactca ggcccgcaca cgcctccttg cagaggcggc tcgctcaggt ccctcccaca 1500 ttagccacta cgaacacgca tgggacgttt tcatgactgc cacatttgag aacggcctga 1560 aacctcacat tagagtagag tgtgttcgag aggacccccc aaactcattt caggacgcaa 1620 gactccgcgc gaaaaaacac gaggcaaata atctgagagg cgcagcgtca cccacatccg 1680 acaccgtatc cgctgtagcg taccctgaac ccccacagct gaagcaaacc gtgtcctcga 1740 acacggcggt cattaaagac ctacaagctc aagtaacgag gctcaagttg atgcgggccc 1800 ccaccaagac cagttcgagt cagggcgcct ctaaaaaggc gcgcaccacg ggcaagggca 1860 gttcttcttc ggcaacgaag gcagaaccgt gcccctaccc ggggtgcaag ttcaaccacc 1920 ccatcgaaca gtgcgggcta aagaaaaagc acgcactgga gaagggatgg acttggacaa 1980 aagcatgacg gggcccttca cgggactcct cgctcgtagg gagacaggtc gatagcacac 2040 cattagctga ggaaactcac gtagcacagg atgcccgagt tgactcagcc ccgtatgtgc 2100 atgacagtac aaaatcgagg gaatcatttt ttcctcggtg agaggtggtg atgtgaagtc 2160 cgttcaagat tctagcagta attctgagac atcggtagca gattctgccc aggcactgtt 2220 tcatagtcgc tcaagtagca aagcagggaa aaataggaag aacaagcgca ctcgtgtgcc 2280 gacttctagg ttagccccgc aagctgaatt tgtactgact ggtagtatgc catttattca 2340 taacacggaa agacatgcct ctgtttcaag tgcatcgagt ggtggaccca cttatgcggc 2400 gtttcatgcg tcagcactga gtaaatatcc ccaacacccg aatgcgttaa attcgtcctc 2460 caagagagtg cgaattcctg cccgaggttg taatcacgct gtgtccgacc ttactatcga 2520 cacagcagct gatgtaccgt gtatatcagc gtctttgatt aaatcgcatc cggtcctgca 2580 acgtttgcct ctgaaacctg tgcctcctgg cgcaattcag ttgaatagcg cagacggatc 2640 agcgttagaa atcctaggat acatccgatt taagctcaca ctgggagata tcacaatacc 2700 agtagaagct ctcgtgttgc ccaatctagg tccggataag atgttgctcg ataatagcat 2760 tatgaatgcc ttcggtgccg tccttgattg gtgcggtgag caactttcgt ttaaaaattc 2820 aacacgaaaa attccggcaa ctcacagacg aacgaatagt caagcggaca ctaataatga 2880 tgcccccgcg caaatatcta tagtgacgct tgacccatcg ataggagcag tgcccgtata 2940 tctctctagg agatactgca ttccccccga aagtgaaatg gcactagacg tcgtgacgaa 3000 acacgcacca caggcaaaca cgcctgcgtt gatcgaacca cggattgtca ctgccaaaga 3060 catcgaaacg tctcaaaata tacccgaagc gttccgtaca atcgtagtcg ctagaacggt 3120 atgcaattgg tcagcaacgg acaagtctgc tgcaatacaa gttgctaatc catccaaacg 3180 acacgttcac attgcacgtg acactatttt ggggtacatt tcgcctgtaa aatcggttgc 3240 cgataaaaca gttagcgctg tcaatagcga ccaaaccaca ttcagacaca agcgagacga 3300 gttgaaacga gccatgaaaa aagcgttcac gaacactaca tttactcctc aacaatgctc 3360 ggaagtcttg gatttatgcg cgaactatcg taacgtgttt tcattatctc cgaaggagct 3420 cggaaaatgc aagatagcca aggcagattt tccgctagaa ccaggcacta aaccagtcga 3480 ccgtgctccc tatcgtacta atcctagagc acaagaagtt atcgacaagt gtgtggaaca 3540 aatggaagac gaggggatta ttgaacagag acccagttcg tggggatctg ctgttaccat 3600 cgtagcaaaa gctgatgaca ctcctcgatt ctgcgttgac taccgctcta ctattaacaa 3660 gagtttaatt cgaaaatctt ggcccatgcc agatatagaa tcccatattg ataccgttgg 3720 aggtgcaaaa tttattactg tctgcgatat ccagtcagcc taccaccaaa tcgaagtaga 3780 cgaagcagaa caagaaaaga ctgcgtttgt gacatacaaa gggaaatggg ttttcaaacg 3840 cctccccttc ggaattgcga atgctccttt tctatttgcc cgtatgatgt ctctgtcatg 3900 ctctcacttc ggaccacgca gtggacgttt ggtgtatatg gacgacatta tttgctgcag 3960 ctcaaattgg gagagccatc taaccttatt agaaagcatg ctccaagcac tccaagcggc 4020 cggtctttcc ttgaaaccct ccaacgtaca atttggacca caggaagtaa aatacctggg 4080 gcatatactg tcggcaaaag ggattcgtgt tggggaatat cgtataaagt ctattgtcga 4140 tttgcctgca cccaaaacaa tcaaagcgct tcgctcagta ttgggaatgg ttaactatgt 4200 gaggaaattt tctacccgac ctttctacgg tgatcgcacc gctagttgaa ctcacacaaa 4260 aagagcatgt aaaatcgatc gcaaaacgtt ggaaccagga acatgataag gcgtttgcag 4320 agatcaaacg gttactcagc aaagcacctg tgttatgttt ccctgacttt accaaagact 4380 tcgtggttca cgtagatgct agtgaagttg gtgcaggagc attcctgggc taaaagaacg 4440 gcgacgatgt gaatattatc gcttatttta gccgacgatt taacaaggct caacgtcatt 4500 actctgcgac gatgaaggaa tgttacggtt tggttttgag tttacaacac tggcgaccct 4560 acttgtgggg cagacatttc gaagttgtca cggatcacgc ggcattgaga tatttgtaca 4620 caatgcaaga cacgtctaat atgctgacca gatgggcaat cgctttgcag tcctttgact 4680 ttacagtgcg acacaagccg ggacagttac atgtagtagt cccagacacc ctatctcggt 4740 tgtttgcgtt cgatcaccaa caacagttgg aagcaccgca acttgcaccg atatgtagga 4800 atgtgcctga tgaccctgcg ctgcattcaa atgttccacc acgtccgtac caagtgtctg 4860 cagatcgttt ggaaaacttg cgaccggttc aaagtgatcg cgaattgttc gctgagaaat 4920 cagtttatat tactgtagcg cgaccaacgt atttgaaact attaaccgcg atatcttgcg 4980 tgaaaaacaa gctcttgaat atggcacata tatcgactat cttacaaaac ctgacgctca 5040 attacctgat gacgagacaa ccacttccat gtcgtactac ttcgtgcgtg atggattgct 5100 gtttaaatcg tatttaccag gctacctccg gaaacgtagt acgtttagtg accaattggt 5160 gttgccttac gcccttaccg gactagtgct acacgcccat catgaccacg tattatctgg 5220 gggccactta gcgtctagac cgacttatga gaagatccgc caaaagtact ggtggccaac 5280 catgaatcgg gacgtccgta cttggtgtaa agaatgccaa gcctgtcaac gtcggaaaac 5340 agcccacaac cggaacaaat taccaacggg acatgtacca gtacaaagac cgtttgaacg 5400 tatttcggtt gatctagttg aatataaagt agaatcagtt tcagccgccg gggtacggtg 5460 caaatatgtc ctatccatga tggaccacct aacccgattc accgtgttga ctccgattcc 5520 caacaagtca gcaatcactg tcgctcaggc cattatcgac cgcatcatca gcatctttgg 5580 atcgcctgaa ctgttgcatg ccgaccaagg acctgaattt gagaacagtg tagtccacca 5640 attacagcgt attctgaact ataagaaaac ccgcacgaca ccataccgtc cgcagggtaa 5700 ttctgtctca gaacgagtac atgctaccat gcacgcaatg cttgccatgc atagttccat 5760 gaaccgcgat aactgggcat cattgctgcc ttttgtccaa ctggcttaca acacgtcatt 5820 tagctccacc atgcatgaaa caccattctt tcttatgttt ggtcggaagc cacgactacc 5880 agttgacatt atcctcggca tccctcatgt gggaacaaca gcgaataccg aggaattctc 5940 taaaacaaca caggaaaatc tacagattgc ttttgaacta gcgcgccgta acctatcgga 6000 acgcacaaaa aaacaagctg ccaagaacgc taaactgcgc cctatccctg cgtttaaacc 6060 tggtgatcta gtagttgtgt accgcccata ccaggattcg gatggaccaa atccgaaatt 6120 attgttaccg tggagaggac cttacgtcat ctgctcataa ttatcaccgg tggtatatag 6180 agtgagacgc cagaacgaaa ctcgagaggt ttcggtccat ttagcccaca ttaaacagta 6240 ctacgcgagg aaaacgccac ctgcgccaga ctttgataag ctttccgagt tttccttagg 6300 acgccagatt ccgttgcccg agctagacca tcccgacgaa gctcaaccga aaattgaatc 6360 ctacgtcgtt gacaaagtgg taagtcataa gagtggtagg gggccgaaaa ccccgtacaa 6420 ctacaagtat cgtttgcgtc ttcgaggcta cggcccaaag tgtcagacct tgaatataga 6480 gcagacgaaa ttccacaatg tcaagaaatg atatctgcct accgaatccg ttgtggtttg 6540 gaaatcgtgc agcctaataa atcgtcgtct cgtgccccag ttgaacaggg agacccaaaa 6600 tcacccagta aaacagggaa acgaaaacga aaacaggcag ctactcctca agaaccttta 6660 agtcgaaaat tggcaacgca aagaggctct gagccaccga acaaaaccaa gaagcgacga 6720 agaaggctcc taaaggaggg tccattaccc aagtcgcgtt ctgctacgac acagagtgat 6780 actcaattgc cctgccgtac tagcaaacga aaacgaacta gggcccggaa attaaacgat 6840 tgatttattc ttctatcgtt cctaacagtt gccatgtctt tcttttccga gacttgggac 6900 aactttatac tactattatt ctgtgttata tatatattta gcacaggacc agtagccacg 6960 gtggttggtt gtatccagtg gaagcaacct atttttgaag tgtttgggga aacactcacg 7020 aggagagtcg aattgtacca ccgctgtccc aagatcttat tttttttttt atgaatagat 7080 aaacttgcca gagggtcacc tcattgcaag ttcatcctcc atcaatatct tactttttga 7140 tgaatagata aacttgccaa agggtcacct catttcaagt tcatcccatc aatatcttat 7200 tttttgagga atagataaac ttgccagagg gtcacctcat tattacaagt tcatcccatc 7260 aagatcttat ttttgattaa tagataaact tgccagaggg tcacctcatt tcaagttcat 7320 cctccatcaa tatcttatgt tttggtgaac agataatctg gcaagttcat cccccatcaa 7380 gatcttattt ttcgatgatg aatagagaaa acttgctaga gggtcacctc attacaagtt 7440 tattcctcat cacgatatta ttttatgatg aaaagacaga ctcgccggag ggtcacctca 7500 ttacgaatct atctctcacc aaccccacag cattatcatg cgaaatattt tagtacacta 7560 gctgtcatca tgatagccca gtacccacat attttttttt agactatacc acatctatca 7620 ctactctgtc tgaagactcc gtgtttttta tcacgcgttg tatgataatc aggccgagtt 7680 gatgatgttg taccaggtag gttaactcca atacatgtgt ctccatgagc cactcatgtc 7740 tatggccgcc aaaagcacat ctttagcaca gatggacttg tggcgcatag aggggggggt 7800 gatgtggagg acacctgtca ggagtacaag ctggtctgac caagacgcaa atttgaagct 7860 tggagcggat ttcccacgcg gttttttcga gttagaacct gaaattttga cacggcatct 7920 gcatgagtac tataaacaca aaggccactg cgccatttgg attatttttt tatttcgtaa 7980 gttgggctga tattagtatt catgggaata tttgctatgc caaaaagtcg cagaaaaaaa 8040 gaaaaaagtc aaatggcgca gtggcttttt tgtttgttgt actcatgggg atgccgtgtc 8100 gaaatttcag cttctaattc gaaaaaaagc gtgggaatcg cgagatcctt acgttgcctc 8160 aggtatctcg tgtgttgtat cggattcttt aataggccat aacttctgat ggaagatgcc 8220 gtgagccttg aaactacctt ctttgctctc gcgatgttcc caggtacatg cacagcaatt 8280 ttcagcttga tctgagaaac gttttttcat gctgatttca gtacaggaag tatcccaact 8340 atgccgccaa ttgatagtta tatacctaaa atcaactcag atccgaaaaa ttccggcacc 8400 cgcgcatccc ctatggtcat atacgagcac ccgccaaatt tgaagtctaa attcgttgaa 8460 acagcagagt gggacatgaa agaacgaaag ttatcttctt ggtcagacca gcttgtataa 8520 ccaacca 8527 // ID Lusen_I repbase; DNA; PLN; 3758 BP. XX AC AF015276; XX DT 11-MAR-2006 (Rel. 11.02, Created) DT 11-MAR-2006 (Rel. 11.02, Last updated, Version 1) XX DE Volvox carteri retrotransposon Lusen LTR retrotransposon DE (internal portion). XX KW Copia; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; Lusen_LTR; internal portion; Lusen_I. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-3758 RA Lindauer A. and Schmitt R.; RT "Lusen, copia/ty1 class retroelement of Volvox carteri."; RL Unpublished (June, 2005). XX DR EMBL/GenBank/DDBJ; AF015276; Positions 295 4052. XX FH Key Location/Qualifiers FT CDS 266..2842 FT /product="Lusen_I_1p" FT /translation="MTNPSPPGRNAQDALEEDAQALGYLRLSCELPVKQLL FT RNCQTTLAAMQLLQLQFRPASQARLSLLEPQKQLRMGDDETTADFIQRAEQ FT LHSDIISAGGQWDEAAMRHAILHGLPPQYAITVEFAMYLPNLTTPQLVFML FT REKENNLKAQAVKSGLVGAVGPGRTARGVRGAAGASGAAGANDTCRYCGQP FT GHYVRECPVKLADVSVGLYRSNAFEQPRSTGASSSGSGNRQRDGGGGGTSP FT GNNSGGDRTRERGRFRRGNGRRSGSNTAGGSSGGGGGGVSSCQNRATVLVV FT GGSGNSSAVVLDSGSPYHLTCDRSLLHNYVPAGAPKQIKWGNNQLADVMGT FT GQLLLRTRDGESIWLRNVLHVPSSGLTLMSVDLLVTLGCSVTFGTDKAGTY FT LGPERGTAAHRVLVDGKVTVSSDVTFDDDLRGLASQRAGTSFGAGPARPGS FT GDPVGGSTQPATPPPPVVASPPVNPAPPPRPNTRSQRQPLHPPLATVCPAN FT NSSGGGGDLGSPPLLNKASGSTNYAEAGDGNAGGGGNSAVQEPRSYEEAVA FT SSQADKWRTSMDDEILSQLSNKTWELGTPPPGARILDCRWVYKIKQEPGGE FT VRYKSRLVVKGFEQRAGIDYGELFAPTTRAALLRALLAVAAARGMTVHQMD FT VKTAFLNGDLAEELWMRQPPGYSNGDPSQACRLLKSVYGLKQAPRCWYEKL FT AAELGKLGYEPSASDPALFVKRGSDGSIDVLVHVDDMLVAADNPQLVAAAK FT AGIAGCFAVRDLGEARYYLGMEIVQDRRNRSIMLTQQRYVEQLLQRHSLEN FT AKPRATPLPQGTRVLPASDTQPILTDSSGYRALVGELNYLATSTRPDIAHA FT QTSHTL" XX SQ Sequence 3758 BP; 732 A; 1155 C; 1193 G; 678 T; 0 other; tcccgaatac gtgtaacggc taatgtctcc ttagtcgtgt ctgctaggtc cctgtgagat 60 agcgtctcac caacagttat gagccccggg taacggttcc cggcggttaa tatctgtagt 120 tgcttttagc ttgagcaggg aggctcgcta ggcaaccgac atgggaaaag ggtgtaagac 180 cgtcctctta gcggacgggt ctaactagtc acagtggcta ggagacttca gtgatttcct 240 tgctacatcc aagctgcgga tctatatgac caacccgtcg ccaccgggac gcaatgcgca 300 agacgctctg gaggaagatg cccaggcgct tggctacctg cgtctatcct gcgaactgcc 360 agtaaagcag ttgctcagga actgtcagac gaccctcgcc gccatgcagc tcttacagct 420 gcagttccgt cctgcctctc aggcccggct aagcctgctg gagccgcaga agcaactgcg 480 catgggcgac gacgagacga ccgctgactt cattcaacgg gcggagcagc tccacagcga 540 cattatctcg gcgggcggcc agtgggacga ggctgctatg cgtcatgcaa ttctccacgg 600 tctgcctcca cagtacgcta ttactgtcga gttcgcgatg tatttgccca acttgactac 660 cccgcagctc gtgttcatgc tgcgggagaa ggagaacaac ctgaaggccc aagcagtcaa 720 gtccggcctg gttggagctg ttggccctgg tcgcaccgcc cgtggagtcc gcggtgctgc 780 cggcgcctcg ggcgccgcgg gggccaacga cacctgtcgc tactgtggac agcctgggca 840 ctatgtccgt gagtgccccg ttaagctggc ggacgtgtcc gtaggcctct accgcagcaa 900 tgcgtttgag cagccacgca gtactggcgc cagcagcagt ggcagcggca accgccaacg 960 tgatggcggc ggcggaggta ccagccccgg caataacagc gggggcgaca ggacgcgcga 1020 acgcggccgt tttagacgcg gcaacggccg ccgcagcggc agcaacactg ctggcggaag 1080 cagtggcggc ggcggtggcg gtgtaagctc atgccagaac cgtgccacgg tgctggtcgt 1140 cggtggcagt ggcaacagtt cagcagtagt cctagactct ggttcgcctt accaccttac 1200 atgtgaccgc tcactgttac ataattacgt tcctgccggc gcgcccaagc aaatcaagtg 1260 ggggaacaac cagctagccg acgtcatggg aacagggcag ctgctcctac ggacgcgcga 1320 tggagaatcc atctggctac gcaacgtgct ccatgtcccc agctcgggac taacgctcat 1380 gtctgtcgac cttctcgtga cactcggctg ctcagtcacg ttcggcacgg acaaggcggg 1440 aacctaccta ggaccggagc gcggcacggc cgcccaccgc gtcctcgttg acggtaaggt 1500 gactgttagc agcgacgtca ccttcgacga cgacctccgc ggcctggcgt ctcaacgggc 1560 gggcacctcc ttcggcgctg gccccgcccg tcctggcagc ggcgaccccg tcggcggctc 1620 tacacagccc gccacaccgc cgcctccagt ggttgcatcg cccccagtga acccagcgcc 1680 ccccccccgc cccaacacac gcagccaacg gcaacctctt cacccgccgc tggccacggt 1740 ctgcccagcc aacaacagca gcggcggcgg cggagatttg ggcagtccac cgctgcttaa 1800 caaagcgtcg ggaagcacaa attatgctga ggcaggcgac ggcaatgcgg gcggcggagg 1860 caacagcgcg gtgcaggagc cgcgcagtta tgaggaagcg gtggcgagtt cgcaagcgga 1920 caagtggaga acttcgatgg atgacgagat tctgtcgcag ctctccaaca agacctggga 1980 gttgggcacg ccgccacccg gtgcacgcat cctggactgt cgctgggtct acaaaatcaa 2040 acaggagcca ggcggtgagg tacgctacaa gtcgcgttta gtggtgaaag gctttgaaca 2100 gcgagcgggc atagactatg gagagctgtt tgcgcccact acgcgtgcag ccctcctgcg 2160 ggcacttcta gctgtggcag cggccagagg tatgacggtc catcagatgg acgtcaagac 2220 ggccttcttg aacggtgacc tggcagagga gctgtggatg cgacagcccc caggttacag 2280 caacggcgac ccgtcacagg cgtgccggct gttaaagtct gtttacggcc tcaagcaagc 2340 cccacgttgc tggtacgaga agctggcggc ggagctgggc aagctaggct atgaaccgtc 2400 tgcgtccgac cccgcgctat tcgtcaagcg ggggtccgat ggctcaatcg atgtgctcgt 2460 gcacgttgac gacatgctgg tggcggcgga caacccgcag ttggttgcgg ccgccaaggc 2520 cggcatagct ggttgcttcg ctgtacgaga ccttggagag gcgcgctact acctcggcat 2580 ggagatcgtc caggaccgcc gcaaccgcag catcatgctc acgcagcagc gttacgtgga 2640 gcagctgctt cagcgccaca gcctggagaa cgccaagcca cgtgccaccc cgctacccca 2700 gggtacgcgg gttctgccag ccagtgacac ccagccgata ttgacggaca gcagtggcta 2760 ccgcgcgctg gtgggagaac taaactacct tgctaccagc acacgcccag acatcgcaca 2820 cgcccagaca tcgcacacac tctgagcatg ctggcgcggc acatgtctgc ccccaccaaa 2880 gcgcacatgg ggctcgctct gggtgtgctg cgttacgtct ctggcactcg ggcgcttggt 2940 ctacgttact gtggcgacgc cagcaatttc tgtgggtaca gcgatgcaga ctgggccggc 3000 gacccagcca cccgcaggtc caccacgggc tacgcttttc tgctcggcag cgcggcggtc 3060 agctggagca gtcagttgca gcgcaccgtg gctgcctcgt ccgtggaagc cgaataccag 3120 gccgcagcag cagccgtgcg tgaggcgttg tggctgcgca agctggcgag cgatctggac 3180 ctttccccgg gtgctgtcaa cgtccagctg gattcgcaag gcgcgctcag cctcggcaac 3240 aaccccatca cgtcggtgcg ctccaagcac atcgacgtgc accatcacat cgtgtgcgag 3300 agggtcgcgc gtggtgaggt gaagctcagc tattgcacca ccgaggacat ggtggctgac 3360 atcctaacca aggcactggg cgaggtcaag ttcgtgcgct gccgcacagc gctgggcgtc 3420 acttagatcg ccagaggagg agtgctgagg gctttgagga attgttttga gctaggcttt 3480 aggggggtgc tgagggtgcg tgagcaggcg cccgaatggg caggtcaatg cccgaagggg 3540 cgccgtaggc agtgcgtatg gtgctgtacg gcactgtttt ccctgtttgt gtttgaacag 3600 cagcaccaga ccgcatagcc atcaggctga aggctggcaa gctgcgtttg tgtttgttga 3660 gtggtgagca gtcggcctgg accgcggact tggtggccga gccagctcgt cggtgctagc 3720 aatttgtagt aaggccccta gtgcgacacg agggggcg 3758 // ID Copia-32_PIT-LTR repbase; DNA; PLN; 205 BP. XX AC AATU01001594; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-32_PIT_; KW Copia-32_PIT-I; Copia-32_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-205 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001594; Positions 11285 11489. XX SQ Sequence 205 BP; 62 A; 48 C; 47 G; 48 T; 0 other; tgttaattca caccgattct gcacggttca gttaaccggc tgaacgttcc aggatggacc 60 gttcccaaac cggttaatct ggtggatggc caggagcgct tgacaagagg acaacaagga 120 ggacaacgct agagtagaag tttagagaca gatctaattg actttaatct actcacttcg 180 gcatttaccg ctaacatcaa caaca 205 // ID Copia-12_PIT-LTR repbase; DNA; PLN; 242 BP. XX AC AATU01000519; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PIT_; KW Copia-12_PIT-I; Copia-12_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-242 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000519; Positions 164554 164795. XX SQ Sequence 242 BP; 67 A; 69 C; 51 G; 55 T; 0 other; tgttgcaagt ctcattctgt cgcaaactgc gatcggcgca gttgcgccat taacgacctg 60 ggacctaact atcgatagcg acggcctgca tacgaaacca acgaaactcc cactacatat 120 tacggtagcc taggatcact atctgtggca aacctactta accctctcat tccaaaatat 180 acccggtgcg aggcaccaga gcaggaagaa cctgtgtgtt ctgggataac ctgctaactt 240 ca 242 // ID Copia-2_ES-LTR repbase; DNA; PLN; 433 BP. XX AC CABU01002974; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_ES_; KW Copia-2_ES-I; Copia-2_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-433 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002974; Positions 26126 26558. XX SQ Sequence 433 BP; 87 A; 100 C; 113 G; 133 T; 0 other; tgttcgtgat agttgctgct gtgtgtgtcg acagagtaac gtagcacaat atgattggac 60 agtttgaatt gagggactgt cgatgttgca gatcgctgag tagccacata ttatcagaac 120 agcaaggaac gttctgtagg aatgctcctc gtggatggtg catttccccg agtgtattct 180 ttatggatag tgcatcaacc agaggattca tggtacgttg tgaagtacgt tggcccctgt 240 tgagtcgttg tgttccgata ttattgtgtt ccgatattgt gttctgcttt cgtccgttgg 300 tcgagcgacg ggtggtgctg cggcgctgcg gtgctcgccc cacccttgct cactccacct 360 tttgacctgt tctcctggtc caaggtctca tcaatacaac atcttttccc cagaagccac 420 gagtttacca aca 433 // ID L1-1_VC repbase; DNA; PLN; 7976 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-1_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-7976 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 480-480 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 3% divergent from several CC copies of L1-1_VC. In addition to L1-1_VC, the volvox genome CC contains other families of L1 non-LTR retrotransposons. L1-1_VC CC is usually inserted into long tracts of (TACA)n. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 129..2147 FT /product="L1-1_VC_1p" FT /note="ORF1." FT /translation="MANGMAQRKRPRTTAPRTLGNGGTRKPTELPNAGRAK FT AAPKRINAFNVVTLDGHKYSSVLELETIDLVVHWPARSDRNDLMAQIYGPL FT GTAIRSTLGQHFSSTEFKWWGGPRIEKRLLYAAGAESNIAMDFSILVPKGG FT LAYLFEAYGERIRVSGVQLCPNEDPIEVELQNKNLHKVLPVQWEIKGVPTK FT LSVHGVAEFLARAYSTSHQPRTATEFLYLIPTAMADTWQLTLPRDHRGLPC FT EMPYEYYGWLGEQHQVGCLKAAKLSPNLEVNPYLMPRCPPPREELRKQQRR FT QREAAGHHTQQTRPADPSPPMPPMAAFSGPTRPATYPGPPGQAVEPQVSGL FT QAAATEGNAAEMVYPPPPPPPPPPPPMPMPLRAPREHNGGKRIGGNGGPAL FT PTGPGSSRVPPSQPNNSGSGGSKPTAQPGGTDTVGPTGSTGWMLQGKKGKK FT TPIPDPPAVPREASQETLGTALHRAAGPGKPTAPTPSASKPAATDMDSEDE FT HTLAVPDLADEEMVAEQSEDDTPSAQQPLEAVARAPAREPKPRTGQAKQRL FT QHLSEEERKARNRAQTAKANEARRASAAAKREAAATSGKSAKPKKQQAKKK FT QQQATSEAPTGSDIEMQESDYEDATEAQVMEVCSPEEPQEESLTPTLQLQL FT PAGTQALASASPPEGDGPTNPPVQ" FT CDS 2122..6819 FT /product="L1-1_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MAQPTHPFSNMSCPRANNGTRQRGATRGHPLRIATHN FT VQGMTARHRPKVHAAVKLWAEMGLDVVCLQETHHTNAHDQGRLENELNLAT FT QAAHTQGWKVAAYSWSDSPHKAGVLILVRRDLATNLEKPPPTPGVRGRFTS FT CVLRWGGHRIHICNIYGPTGTSAHVNPLRQQLFTTTLPATTKHAAENSDTM FT LVWAGDFNFVEDPGLDSTAGPGGRRGDGPTVDLLRAAGPTMVDSHRQLHPH FT SCDYTHFYRAPCVGASRLDRIYVDHGTMPYIAKTEIAVQTPSDHKPMVMHL FT LPCRPESKGPGNRRVRLAFTSHQDLAASMEAWITSQCATAPSAEDNPLGLI FT AWWPGFKRRLSTLALQLNKAAQHRKLRPGARAREVLPQVQLARQAVDAAPT FT AQQPLQQLVEAQAMLARAHREDCRKDAMEARTHWLRAGERPSPSLTAFLQA FT QAIDQQPAPVALQALSGRLVTNPAQLPQVVADFWKDVSKAPDFICPQARQA FT VLNSLTAANIKFPAEADEQLGAKKITATELRKALKKSAPGKAPGWDGIPAD FT IYRKFWSAIGNTMAGLFTAIGTTGQVPAGFLEGIITVLYKKGDPKLPGNYR FT PITLLCSDYRLLAKVLANRLGPALGRVITPEQSAFLPKRLIGASVLFLRHL FT SHLLRKQNRQGLLAFLDFAKAYDTVDRGFLLAAMEAMGAGPQLCAWVRLLL FT SETRARAMVNGYKSRLVDMEAGVRQGCPLAPLLYLFVAQALQCWLRSQEVG FT IKLQPSDPNPVTACQYADDTEVALDGAESVPSFLQAMETFARASGQRLNLE FT KVELLWIGQQRQQQQQPAPAAGPQLTAPQQETIGGLKVVTTATALNLPIDN FT QVTPPQPDWTKRMGEAKRRMQRLSRFPLSAFGRATAASAYGLQTVTWHMEH FT GGLAPDRVLDEIERLTARLVDRQQGPDDPGRRLTGVPKELLIGHPSTGGFG FT LLPLRQHIQARHAVWAARFVIATLGLRTGNTRSDTGATDTDMQVGGGIHPW FT VRTLSAYLLLTNPAFQPWALTTASPTGPWLGTRDLPKDISRIVGALGHLPP FT PEDIGTNPLTPGDWCWATALWGNPLFPNAGGTDPTDRGRRPGLEYQYPGLA FT TCRKLQTVGDLVRVWTLAESSDLATLPRTVWLEWARTHLDPLTPISTRDKP FT VTRAALAALHSSINPAWLEAARTVETRRQQQQQQQQRGLTEPMAAATEGEE FT AVIPSPAPLLTSMQAMGMIAGRIGWRIPGMAEATPLARLTVRLATQLQCGP FT MEERRRRLVAEFVREATDPQGPSPPPPSEISLFRATQARVWSGVRWENENK FT ETLWRLAVDGVALPGNTHLARMTPERCGCGGFGGAAGQPCSPRMHHFWECP FT VAQAVRAQIDRHLQSSQEAAVGGVTRKQLWLLLAPTGCEQAVWDIIALSAL FT SAMEVGRCCLRAAGRRQERAGSQGPQNREHAQQVQVPGPRQRRITDFFIQA FT DGAGPQTGPALNAPGDEDQTQERNTATGAVAATAGAAAAAPAATPLERACA FT RAVVDFWARLRSFTALGTPRRGWDRVGPDHPILSVSEGALRCAEAVEIIA" XX SQ Sequence 7976 BP; 1754 A; 2394 C; 2490 G; 1338 T; 0 other; tgtatgggtg tataatgacg acctgatcgt tagactgcaa cctgattgct accatggaca 60 tcggccgcac acggccgcag ttgccaaact aattgccaac ctatcatctc agaaatggta 120 ggatagaaat ggcgaacgga atggctcaga ggaaacggcc gcggactacc gcgccgagga 180 cacttggaaa tggcggcacg agaaaaccga cagagcttcc aaacgctggc agagcaaaag 240 cagctccaaa gcggattaac gcctttaacg tagtaacgct ggacggccac aaatacagct 300 cggtgctgga gttggaaacc attgacctcg tcgtccattg gcccgcgagg tccgaccgga 360 atgacttaat ggctcagata tatggaccat taggaacagc tattcggtcg acgctgggcc 420 agcatttcag ctctaccgag ttcaaatggt ggggcggccc acgcattgag aagcggcttt 480 tatacgcagc tggggctgag agcaacatcg cgatggactt ttccattttg gtgccaaaag 540 gtggattagc gtacttgttc gaggcctacg gtgaacgcat tcgcgtgagt ggggtgcaac 600 tatgccccaa cgaggacccc atcgaggtgg agctgcagaa caaaaatctg cataaagtct 660 tgccggtaca gtgggagatt aagggagtac ccaccaaact cagcgtccac ggggtcgctg 720 agttcctcgc cagggcctac agcaccagcc atcagccccg cacagcgacg gaatttctct 780 acctgatccc cacggccatg gccgacacct ggcagctcac cctgccccgt gatcaccggg 840 gcttgccatg tgagatgcca tatgagtact acgggtggtt gggcgagcag caccaggtcg 900 gctgtttaaa ggccgccaag ctgtcaccca acctcgaggt aaacccctac cttatgcccc 960 gctgtccacc accccgggag gagcttcgca agcagcagcg gaggcaacga gaggcggcgg 1020 ggcaccacac ccagcaaacc cgcccagcag acccttcacc gccaatgccg cccatggcag 1080 cattcagcgg ccccacccgc ccggcaacct accctggacc cccgggacag gccgtggagc 1140 cgcaggtgtc agggttacag gcggcggcaa cagagggaaa tgcagcggag atggtttacc 1200 ccccgccccc accaccacca ccaccaccac ctcccatgcc aatgccactt cgggccccaa 1260 gggagcacaa cggcggcaaa aggatcggag gcaatggtgg accagctctg ccaactggac 1320 ccggtagcag cagagtccct ccctcgcagc ccaacaacag cggcagcggc ggcagtaaac 1380 ccactgccca acctggcggg accgacacgg tgggtcccac cgggtctaca ggctggatgc 1440 tgcaaggaaa gaagggtaag aagaccccca ttcccgaccc acccgcagtc cctcgggagg 1500 ccagccagga gaccttggga acagcgctac acagggcagc tggcccaggc aagccgactg 1560 caccaacacc ttcagcttcg aaaccagccg caacagacat ggactcggag gatgagcata 1620 cattggcggt gccggatctg gcggatgagg agatggtggc ggagcagtct gaggatgata 1680 ccccatcagc acagcaaccg ctagaggcag tagccagagc cccagctcgg gagcctaagc 1740 cccgaactgg tcaggccaag caacgcctgc agcacctatc ggaggaggag cggaaggcac 1800 gtaaccgggc acagacggcc aaggcaaacg aagcccgcag agcctcagct gcagctaaac 1860 gggaagccgc cgcgacttcg gggaagtcag ctaaaccaaa gaagcaacag gcgaaaaaga 1920 agcagcaaca agcgacttcg gaggccccga ctggcagtga cattgaaatg caggaatcgg 1980 actatgagga tgccacggag gcccaggtca tggaggtatg cagtccagag gaaccccagg 2040 aggagtccct gactccaacc cttcagctgc aactgcccgc cgggacccag gccctggcca 2100 gtgccagccc cccagaaggg gatggcccaa ccaacccacc cgttcagtaa catgagctgt 2160 ccaagagcta acaacgggac tcgccagcgg ggagccactc gaggccatcc ccttcggatt 2220 gctacacaca atgtacaagg catgacggcg agacacagac ccaaagtaca cgcagcagtc 2280 aagctatggg cagagatggg cctggatgtg gtgtgcctcc aggaaaccca ccacaccaat 2340 gctcatgacc aaggccggct agaaaatgag ctaaacctgg caacacaggc tgcacacacc 2400 caggggtgga aagtggcggc ctactcctgg tcagactctc cccacaaagc gggggttctt 2460 atccttgtcc gtcgggattt ggctaccaac ttggaaaagc cgcctcccac tcctggggtc 2520 agagggcggt ttaccagctg tgtactacgt tggggaggac accgcatcca catctgcaac 2580 atttatggcc ccacgggtac ctcagcacac gtgaaccccc tccgacaaca gctgttcaca 2640 accacgctgc cagccacaac caagcatgca gccgagaaca gtgacaccat gctggtctgg 2700 gcaggtgact tcaactttgt ggaagaccca gggctggact ccacagcggg tccaggaggg 2760 cgacggggag acggcccaac agtggacctt cttcgggcag caggccccac catggtggac 2820 agccaccgcc agctgcaccc ccacagttgt gactacaccc acttctacag agctccctgc 2880 gtcggggcct cccgcctaga ccgcatctat gtagaccatg gcaccatgcc gtacattgct 2940 aagacggaga ttgccgtgca aacaccgtcg gatcacaagc caatggtcat gcacctgctg 3000 ccgtgccgac cagagagcaa gggcccaggg aaccgacgag tgcggctggc cttcacatca 3060 caccaggact tagccgcaag catggaggca tggatcacca gccagtgtgc cacagcacca 3120 tctgcggagg acaacccttt gggcctgatt gcgtggtggc caggttttaa acgccggctg 3180 agcaccctgg cccttcagct caacaaggcg gcacaacacc gcaagctcag accaggggcc 3240 cgggctcggg aagtgttacc gcaggtccag ttggcaaggc aagcggtgga tgcagccccc 3300 acagcacaac agccactcca acaactggtc gaagcccagg caatgctcgc acgagcacat 3360 cgggaagact gccggaagga tgccatggag gcccgcaccc actggctgcg ggcaggggag 3420 aggccgagcc catcccttac agccttcctc caggcccagg ctatagacca acaaccagcc 3480 cctgtcgccc tgcaagcctt gtccggccga cttgttacca accccgctca gctgccccag 3540 gtggtagccg acttctggaa ggatgtgagc aaggccccgg acttcatctg cccccaggcc 3600 cgccaagccg ttctgaactc cctcaccgca gccaacatta agttcccagc agaggcagat 3660 gaacagcttg gagccaaaaa gatcacagcc accgaactgc ggaaggcact caagaagagc 3720 gcacctggca aggccccagg gtgggatggg attccagccg acatctacag gaaattctgg 3780 tcagccatag gtaataccat ggcaggcctg ttcactgcca ttggcacgac cgggcaggtg 3840 cccgcaggct tccttgaagg gatcatcaca gtgctctata aaaaaggcga ccccaagctc 3900 cccggcaact accgccccat cacgttgtta tgctcggact accggctcct tgctaaggta 3960 ctggcgaacc gcctgggccc cgccctggga cgggtcatca cccccgagca atccgccttc 4020 ctccccaagc gcctgattgg ggccagcgta ctcttcctgc gccacctgtc acacctcctc 4080 cgcaagcaga accgccaagg gcttttggca ttcctggact ttgccaaagc atacgataca 4140 gtggatcgcg gctttctcct agcggccatg gaggcgatgg gggcagggcc acagctgtgt 4200 gcgtgggtac gtctgctact gagcgaaacc cgagcccggg cgatggtcaa cgggtacaag 4260 tccaggctgg tagacatgga ggctggtgtc cgacagggct gccccctggc gcctctgctg 4320 tacctctttg tcgcccaagc tctccaatgc tggctccgga gccaggaggt gggaattaag 4380 ctgcaaccgt ccgacccaaa tcccgtcacc gcctgccaat atgcagatga cacggaagtg 4440 gcgttggatg gcgcggaatc agtcccctcc ttcctacagg ccatggaaac atttgcccgg 4500 gcatctggcc agcgactcaa tctggagaaa gtggaactgc tatggattgg ccagcagcga 4560 cagcaacaac agcagccggc gccagcagca ggaccccagc taacagcccc ccagcaggag 4620 acaatcggag gacttaaggt ggtaaccact gctactgccc tgaacctgcc gatagacaac 4680 caggtgaccc caccacagcc ggactggacg aagaggatgg gagaggccaa acggcggatg 4740 cagcgtctgt cccgcttccc gctgtcagca tttggaaggg caacggcggc gtcggcatat 4800 ggcttgcaga cggtcacctg gcacatggag catggcggac tggccccaga ccgcgtgctg 4860 gacgagatag agcgactcac ggctcgcctg gtcgaccgcc aacaaggccc ggatgatcct 4920 ggccgacgct tgactggcgt gcccaaggaa ctcctgatcg gtcacccatc gacaggaggc 4980 tttggtctgc tgcccctccg gcaacacatc caagcccggc atgcggtgtg ggcagctcgt 5040 tttgtcatcg caaccctagg gctgcgaaca ggcaacacga gatcagatac aggcgcaaca 5100 gacacagata tgcaggtggg cggaggtatc cacccctggg tccgcacgct ttcagcctac 5160 cttctgctca cgaaccccgc tttccagccg tgggccctga caaccgcgag cccaactggg 5220 ccctggcttg ggactcgtga cctgccgaag gatatcagcc ggattgtggg agccctgggg 5280 cacttgccgc caccagagga catcgggacc aacccgctga cacccggtga ctggtgctgg 5340 gcgactgcat tatggggaaa tccgctattc cccaatgctg gagggaccga cccgacggac 5400 cggggccgcc gccccggcct ggagtaccaa taccctgggc ttgccacctg caggaaacta 5460 cagacggtag gggacctggt gcgggtttgg accctggcag agagcagcga tctggcaacc 5520 ctccctagga cggtatggct ggagtgggcc cggactcacc tcgacccgct taccccgatc 5580 tccacgcggg ataaacccgt gacccgggca gccctcgcgg cgctgcatag cagcataaac 5640 ccggcctggc tcgaagctgc tagaacggtt gagacccggc gacagcagca gcagcagcag 5700 cagcagcggg ggctaacgga accgatggca gcggcaacgg aaggggagga ggctgtcata 5760 ccgtcaccag caccactgct gaccagcatg caagcgatgg gtatgattgc tgggcgaatt 5820 gggtggcgta tacctgggat ggcggaagcc accccgctgg cacgccttac ggttcgcctg 5880 gcgacacagc tgcaatgtgg gcctatggag gagaggagaa gacgcctggt agctgaattt 5940 gtgcgggagg cgacggatcc tcagggcccg tcgccgccgc ccccctcgga aatcagccta 6000 ttcagggcga cgcaggcccg cgtttggtcc ggggtacgat gggagaatga gaataaggag 6060 acgttatggc ggcttgcagt ggatggcgtc gccctaccgg gcaacacgca cctagcccgc 6120 atgactccag aacgctgtgg atgtggcgga ttcggtggag cagctggtca gccatgctcg 6180 ccacgcatgc atcacttttg ggaatgcccg gtggcgcagg cggtgcgggc acagatcgac 6240 cggcatctac agtcttctca ggaagcggcg gtaggtggag tcacccgaaa gcaactctgg 6300 ctattactgg ccccaaccgg atgcgaacag gccgtatggg atataatcgc cctgtcggcc 6360 ctgtctgcca tggaggttgg cagatgctgc ctgagggcag cgggcaggag gcaggaacga 6420 gctgggagcc aaggaccaca gaaccgggag cacgcgcagc aggtgcaggt acccggcccc 6480 agacagaggc ggataacgga ctttttcatc caggccgacg gggcgggacc gcagacgggg 6540 cctgcactga atgcgccggg ggatgaggac caaacgcagg agcggaacac ggcgacaggg 6600 gcggtagcag caacggcagg cgcggcggca gcagcacccg cagcaacccc cttggagcgg 6660 gcctgcgccc gggcagtggt ggacttctgg gcgcgtctgc gctccttcac ggcgctgggc 6720 accccgcgga gaggctggga cagggtggga cccgaccacc cgatcctgtc ggtttcagaa 6780 ggcgcactgc ggtgcgccga agcggtggaa attattgcct aagagcgctt tgagcttagt 6840 ttgtagggca gggctcgggg gggtatagga gttcgagggg gatgggggtt ggaggacaag 6900 ggaataggtg agagggaacc ccgagacggg agagggagag gagaaggacg gggaatggag 6960 gcggtcacgt cgtgcaggga agaacccttt ttcttcccta gtgccgctcc gaggttgtag 7020 ggtgctggag agccgggggg aggtggggtc gctcggacag gggagggggg agatggcggt 7080 gagagcgcca aaaggacgta ggttttctgg tgtttgggag gttgaggtct ggtggtggta 7140 gcggggctcg gatgaggggg agatgtggcc cgaggagggc cattctattt agacacgtct 7200 tctctgtggg actgggttgc ttggtgaggg acgagggtga gagcggtgca gtacgagaca 7260 gggtgaatag gtttctggag gaccaaccgt tcaggttagt ggcggtaagg gggaggcgcc 7320 gcgcgggcta caatcctccc cctgcggttt tctggagggt ctaggagctg tgtgtcgtgg 7380 caacgctaac gcttttgtgg tttcgccgga ctatcccggg cccctgcagt ggtgatcagg 7440 cttgtgcggg atcccttttc tttataaggc tacttctccc ctggaccagc ccaggaaggg 7500 acaggtggtg gaggtcagtt gttttaaggt ggttgcaaga cgtcttgtgg tgtcgagctc 7560 tcttagcctt tctctcttgg aggttttttt tgttggcctg ttaggtatat caggagccct 7620 cccctgccgg gactgcccta accgaatttt tgtttgtttg tttgttttcc cttcgaatcc 7680 cgttttcgtt ggtggtgttt tggggggttg tttcagagag cctttgactt tgccctagct 7740 gagacttgtg gactcgctct agcgggacct gagagccctt cgtggtgtat tcaatgcagc 7800 gccatccccg gatggagggg ctgcggagtg gctgcgtaga gtgttggcag tctgagtcgg 7860 ggtcgggagc acacaagact aaccgacttg tgctgtgtgc tcccgaccct tgcgctgtgt 7920 ttcggcttcg gcccccggct ctcgcggccc acagtgtaat ctaagtcata cataca 7976 // ID Gypsy-12_PR-LTR repbase; DNA; PLN; 296 BP. XX AC AAQX01001388; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-12_PR_; KW Gypsy-12_PR-I; Gypsy-12_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-296 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001388; Positions 55163 55458. XX SQ Sequence 296 BP; 74 A; 78 C; 84 G; 60 T; 0 other; tgatctggct ccggtatccg atcaccggtg atcaccggac gccagcactg ccgacccagc 60 agtgaagaca gctctgcgga gggcgaatcg acgactgaga tctcacacct catatgtagg 120 atatgagatg tgagagccta ggcagtgaag ccattgttac aggagaccca gagggatagc 180 cctcttggag gcgctgctag cgcaggattt ggctaagctg ctcaattcat gtcagtttgc 240 attttacctt accgtgcaca agtaatccgg ggtacagaga cccgggacac cgaaca 296 // ID PCAL_I repbase; DNA; PLN; 5866 BP. XX AC AF007776; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Candida albicans Ty1/copia-type retrotransposon PCAL_I, internal DE region. XX KW Copia; LTR Retrotransposon; Transposable Element; PCAL_I; KW Ty1/COPIA superfamily; internal region; internal portion. XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; OC Candida. XX RN [1] RP 1-5866 RA Matthews D.G., Goodwin J.T., Butler I.M., Berryman A.T. RA and Poulter T.R.; RT "pCal, a highly unusual Ty1/copia retrotransposon from the RT pathogenic yeast Candida albicans."; RL J. Bacteriol 179(22), 7118-7128 (1997). XX DR Genbank; AF007776; Positions 281 6146. XX SQ Sequence 5866 BP; 2024 A; 947 C; 1159 G; 1736 T; 0 other; gattagaagt cgatagtgat aatcatttcg tcccaaatta gcgttgtata aattcagtcc 60 tcagatttgt attattgatt gatagtttcg aagtttgaag gtacagaatt tcacaagatg 120 agttccgcaa agaatgatga taacgaaggg aaggtcatgg aaagtgttga tcaagctaat 180 gctattagta aggtggatga acatatcaag gctagattca atatgctttt cataaaattt 240 aatgacttac ctaagttggc cgtcggtaat cagaaaagcg tggataaatg gaatgaagaa 300 tttaaatatt tccacgttgc ttaccccgat gttttggaat ttttgcttga ctataatcct 360 aaagataaat tcaaggttaa aaaggtagaa ggtatttatt ttactggttg gtgtttacaa 420 atgtgtttac agtccatttt tgataggttc agattgatca tgatttctaa gctaccaaag 480 cacttgcaaa aggaagcaaa cttaatcaaa gctgcttatg atgctgttac taaatctaaa 540 gattatacca ttactagtaa gatcttgctg aagtttgtaa acgttgaaca tgagttagtg 600 gtttgctata accttccata tttgctgcag gtggaagaga aacttgagga aatactctac 660 aacacttcaa acgttgtcga tgagtatgtc cgtagtcttc caaatctcat aggtcaagtc 720 ttgtacttca atcatgtgaa gaaatcagag gctttaagtt tgtttttgaa tattcatgcc 780 tcatactact caaagtggat tcaagctgac aatgatacat cagtactccc aagttgctct 840 accatagctg aagaaatgtg tgatcatcct gattatgcta gattggttga cattccaagc 900 aacaaatatg aacttaatct tattgttagt ttaccagcac cagagaaacc aaaaggaaaa 960 ccagaggaga actcactgga acaatctcaa aagaagaacc tgaaatcaag aaagagaaat 1020 aagaaacatc caaaatcaga taacgataaa ggtgaaaaag aaaaagaaaa agaaaaaact 1080 tcactggaat gaaaaacagg tgctgcttct attaattgtg taatgaatat acataattgc 1140 agcaaaacca cgtttccagt agaaaattct cattctctta atgcttcttt gaacgtaatg 1200 aattttaaag gtttaaggtt taacaagtat ctagtgtatg atactggtgc cacaatatct 1260 gttgtgaaca ataaagatat attgctgaat gttaaggacg caacaattga agtttctgtt 1320 gctgatggtg ctacattaga agcagattgt attggtgatc taattatcag agtcggtatt 1380 gtctcgatta cgttagagaa tacattgtat ttaccagaaa gttcctttaa tcttgtgagt 1440 ttgaaacaaa ttgaagaacg aggatttaat gttcttatta ctaaagaatc agtgattgta 1500 tttaaccaaa atgtggctcc tactattatt gcttcaagga agaatgctgc tgatctttat 1560 atgggtcctc aattcagtga agaatcttta gaatgtgatt ttgattatga tggtttggca 1620 gatatgttgt ccaatgctaa ccaagatgac aaagataaat caagtatgaa tgaaatgtca 1680 gaatatcaag aacatgatta tagttctcga gcattaataa attctttgac ggaggttgat 1740 gttttagatg ttgaaatttc cccatatgga gttgaacaat tgctaccaac tggagataag 1800 aacgatattt ataatttcca tttgatgtca aatcatatgt ccattgagaa aatcttgttg 1860 ttacaaaaat accagggtct cgtacttcac acttcaaaag agagtcttca aaagattgct 1920 gattgtaagg tatgtctatt atcgaatgcc aaacagagaa gtcacaatca tcattcagaa 1980 agaaaagcct cgagaagaca tgagagactt cattgtgata ctctcggtcc atttaggtcc 2040 gaaaataaca agtggtattt aacgtctgtt atagatgaac atacgggtta cattgaagga 2100 attattacta aagacagaaa ggtaaaggat ctcttaattc aacgattaaa gatctggaat 2160 aatcggttta acgataaggt ggcatacttc agaagtgata atgctcctga gttcccacaa 2220 ccttctgatt tagctgagtt cggtatttgg agggagacta tagcggcata tctgcctgag 2280 cttaatggtc tcgccgaggt tgttaataaa ttgattttac aacagattta caggatcgtt 2340 gtgacacttg gtccacaaat actcaagttg atttattatg tgattcaata ttctattaca 2400 atgatcaacc acactccacg tcgttcactc aagggacaaa ccccttatgg ttgctattat 2460 caattaagtg agggaaattt ctaccggttt ccttttgcca tcgattgtgt cgttacattt 2520 agtaatgcca tcgaaaagaa ccgttacgga gttacatcaa ctaaaggagc tccttcatcg 2580 atcatgggtg ctgtgattgg ctacgctagc gattgtttta gttattacgt gttgctaaaa 2640 aatatgcggt gtgatattat ccttagccct aatgtccgta tattgcgaag ctatgaggtt 2700 attaactcct atctcaaaaa cttatccact acacctatgt cacacattgt tcctatggct 2760 gaaggtatcc agggaaggca actgggcgct cagtacgagg tacgcggaac atatgtggaa 2820 agtgaatatg acaatacaaa tgacgtgatg cacatgccca aagagtcata ttcagttcag 2880 ccagcatcgt ttactttaac tacgggtaac agttctaacg aatatgttat aaatgatgat 2940 ccagtacaga ttaccattga gaatcccgat gatttttcta accctcttca actaactgaa 3000 gaatcacacg atatggtatc cgaagtaaaa tcggatgaga atcctaaacc cagtctccac 3060 gagctaacac ctggggataa tccggtgtct aaacctcctc aacttggtac cgagacttca 3120 gtaataggga agtctaaaga gcctattaca aaccacacaa aggacgcccc ttccatccag 3180 gggagggacc ataaacgcct ggaatctact gctcaggttg gactatcaca ccaaccccag 3240 actggtactc ccgcttcgga ggagtcaaaa ttgtcaggaa cagatcattt cggtgtcgac 3300 gttgttaaag aaacagtctc agaagattgg catacttctg actacccaga aactagtgct 3360 gaagatgaac agcaaaatcc ctcgttactg gctaataaga atcgggtaac tgaaaaaata 3420 gatgagggag aaaatatttc atttccgggg ggtgatgatg attctgtcgt gatcaactca 3480 aatgttgagc aatctaatgt tgaaacagag gatgctggta acagtccaat tcaagacgaa 3540 gtttctcaag agggaagaat acttaatgaa caaactgata tagttgatac tgttgctaaa 3600 gttattgaga atgaaaaaat ctctcctatt aattcattag atgatcatac tgaacttgct 3660 acagactcgg gaaatgatag caattcaaca gaatccgaca ttcaatcgaa aaatgaaata 3720 tcaccagtga ttaatgagaa aaatactgaa ataatccaaa aacacattga aagtatcctt 3780 gctgataaga gattggatga atttgaaacg tataatgttg atgaaattga gaatgtgatt 3840 aatgacgatg acattgctga agctaatcca ctaccagatg aaaataatga tgttcagatg 3900 aatgagagtt ttgataataa tcatagcatg tcacgagcaa agaagaaata cacatttgag 3960 aaagaagtta acgaaaaaat tgctggtact aaacattcac ttgatacaac tgatccaaga 4020 gaagcaatca gagtgttaaa tactggtgaa accaagagaa tcgaacccaa gaaaagagag 4080 gtgcctatca ctgtgaaatt aaacaaaaga tcgcaataca agtcaccata tgttacaaga 4140 agtggtagaa cggttataaa ccccaagagg tatttacatg cggtcgtcaa caaaatcgac 4200 tataatgatc cgggatggat aaagtcaatg aatgctgaac tagagaaatt tagatcaaaa 4260 gatgtttacg aagaagttcc aattcccacc ggtgtgaagc ctatatctat gggttgggta 4320 catactgaga aaattgattc tctcaaaggt gttgttcgga aatcacgttg tgttgtccat 4380 ggcaacagac aaaaggaaaa attggattat gaccctttta gtgttagttc acctgttata 4440 gatcttgtga ctataagatt attgacaata ataggttgtg aattaggaat gacaattcaa 4500 catttagacg tcgagtcggc gtatctaaat gcctctatta ctcattcaaa tccaatttat 4560 gtctttcctc ctaaatcagt acctttgaag aaaaaccatt gttggttatt gaaacgttct 4620 gtctatgggt taaaacagtc gggtttggaa tggtatcaca ctatcaaaag agtattggaa 4680 gacattggtt ttactcaagt tttacacaat gatggtttat ttcacattga atatgaagag 4740 ggatcagtaa tatatttagg tttatatgtt gatgatattc ttatggttgg aagttcacaa 4800 aaagttattg ataattttgt ggatcaattg agagatcatt ttgaagttaa agtgtttggt 4860 gaaatatcaa attatcttgg tattgaattt cgtaaaaccg aatctggtta tattttatct 4920 caagaaaaat ttctcaagaa attacttaag gatttcaaac tagatgactc atatgggaaa 4980 aacataccct ggattccgaa tgacaaatat gaaaaggttg caataattcg tgaaaacgtt 5040 aatccagaga atgattttga aaaggttccg aatgagacat tgcttgaccc tgatgctaaa 5100 aaactatacc aaagtggtgt tggcctgctt ttatgggctg ccacaaacac acgtccagat 5160 atatcggtcg tagtgaattc gttgggttct aaatctgcaa atccaaatgt ccatgattat 5220 gagaaattga tttattgtct taggtatatc aaaaatagca tgggatatca cattgagtac 5280 aaaagaaaca gattgaatat accaccaaaa tcatttgtta tcgaatgttt cagtgatgcg 5340 tcatttgcac caggattgga tagaaaatct attagtggaa ctttgattta tgtgaatgga 5400 aatttggtgc aatgggcgac caaaaaacaa acggtcatag cacaaagctc agcagcttgt 5460 gaaatgttgg ctctaaatta tacaatgttg aaagctatcg aaataaaaaa ccatttaatg 5520 gatttgggtt ttgaagtagg taagatacat tgtcatcaag acaaccaagc tgtgattaaa 5580 gttttgagaa ataactattg tcacccacat cgaccaatag atatctgcta taagtttcta 5640 cgccaattga tcaatgataa agtattttca atatcctatg tgaagacaaa tgataattac 5700 gccgattgta tgactaagtg tctaagtcgt gctaaattca aagcattcgt tgagggtatg 5760 ataaaacggt tagacctaga agataatcaa acactgatac aaaatgcaat aacggcagaa 5820 taagtggatt tatcattact attatcgtaa tgctcaatca ggggag 5866 // ID Copia-44_PIT-LTR repbase; DNA; PLN; 240 BP. XX AC AATU01003873; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-44_PIT_; KW Copia-44_PIT-I; Copia-44_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-240 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003873; Positions 67002 67241. XX SQ Sequence 240 BP; 73 A; 70 C; 46 G; 51 T; 0 other; tgttggagat cgcaccttgt gccacctgcg atctgcacaa gtggcgcaag taactacaca 60 agatcatgta cgacaggaac cgcttccaca atcccatatc aagaaaccaa cagttacacc 120 tatgcatgca gaactagccg acacgtagct agctaggtaa tcttctcatt ctaaatctta 180 cctggtgcga ggcaccacaa caaggagcaa ccttgttctc accaaagtgc tcctcgaaca 240 // ID MuDR-1_PPa repbase; DNA; PLN; 5196 BP. XX AC . XX DT 31-DEC-2009 (Rel. 15.07, Created) DT 31-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE MuDR-type DNA transposon - consensus. XX KW MuDR; DNA transposon; Transposable Element; MuDR-1_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-5196 RA Bao W. and Jurka J.; RT "DNA transposons from moss."; RL Repbase Reports 10(7), 950-950 (2010). XX DR [1] (Consensus) XX CC TIR is 55-bp long. XX FH Key Location/Qualifiers FT CDS join(860..1177,1161..1616,1567..2316) FT /product="MuDR-1_PPa_1p" FT /translation="METLQGANYHFTYHCDEEDKVTCLFFAHFNCVQLAKR FT YHFSIVMDCTYKTNRFRMPMLHVIGMTSFNTSFIIGVAFFPRRNKILLLLD FT INPTSASIWRNLTHLHRCPICIGVDRDLALINAIELIFLTSNILLCIWHIQ FT KNMLANYKKYFSNKVELGWSSFLADWTIVISACSVELFDLEWTNLCNKYIP FT TIAHAAIEYLKNTWIPHKKRFVKAWTNNLLHLRSVTTSQVEGQHSALKSYL FT KVSTKDLREVQISLLLFKSPPKTLEKFKFLSYFFENTTRELKAQESSKQIH FT IAHQHNIGFFTNVVKHVSLHALNLVLEQYKQARAKIDEHNFSCTRTMTNTL FT GLLYKHQIRILLRRRDVLSISDFHHQYYLVNTLDQFIPIPPTIPFSFESLC FT LLYVAVSQTFDVLLLHQQENLHKRLVELSTIIVQLKNLQVSCPKERPQGAR FT NRTRSDMHAKTSTQRSASQFETIEARTRRHFCSNCKSMGHNICTCPTRTTF FT SSQLSTNNIQTE" XX SQ Sequence 5196 BP; 1799 A; 974 C; 870 G; 1550 T; 3 other; ggagaatgat aaatgaacca aatttttact aaagcgatcc acccatcatc acaattttgt 60 acatggatag tacaaatctt cttcatcatt aagaccataa tctatatttg gataaataga 120 atcatcattt tggatataat ttccaatggt tctcaatagt tttcaatggc tagtaataac 180 atctttctat tgttcttttc ctacttgtcc tataagtatg tgtgtactca atttacttct 240 tcatcttatt ctagtatata ttctttttca gattgtgtat agtggataga ggagaaaaaa 300 ttatatattc tataattttt ttgcattttg caatagaaag tgagggatat atgtgtgcac 360 cactagaggg atattttgag agtatagaag aaatgaaacg tagtattgat gaatttacac 420 acaatcaagg ctatgtcgta tgcaaatgac actctgacaa agattgcatt gattacaagt 480 gtgacaaagg agaggtttat tgtgatcaaa attgtcatac tcacaaacaa aatagtgcaa 540 gtcatctgac agatgtccat ttgcattgca tgcttgtcat ttgcataata gtactcaatg 600 gcatttgatt gttcgaaatg ctcttcataa ccatggagct acttcttttc ttttaggcca 660 tctatttgct tgctgtttgc aaccagccaa aaaagaacta acttcacaat tgctagctac 720 aggcatccca ccaaaaaatg ttgttgttgc cttatatgag agtgatacta atagcaaagt 780 cattgctcaa attatttata atgagtgaca aaaattacgt tgcattgcac ttgctagaca 840 atcacctatt atatgtctta tggaaacttt acaaggagct aattaccatt ttacttatca 900 ttgtgatgaa gaggataaag ttacttgtct attttttgca cattttaatt gtgttcaact 960 tgcaaaaaga taccattttt ccattgtcat ggattgcaca tacaaaacaa atagatttag 1020 aatgccaatg ttacatgtta tagggatgac aagtttcaat acctcattta tcattggtgt 1080 tgcttttttt ccaagaagaa acaaaatcct tcttttgttg gacattaatc caacttcagc 1140 aagtatatgg agaaatttga cccatttgca taggtgttga tagggattta gcattaataa 1200 atgccattga attaatattt ctcacttcaa acatattact ttgtatttgg catatacaaa 1260 aaaatatgtt agcaaattac aaaaaatact tttcaaacaa agtagagtta ggatggtctt 1320 cattccttgc agattggacc attgtgatta gtgcatgttc tgtagagctt tttgatttgg 1380 agtggactaa tctttgcaac aagtacattc ctactattgc tcatgcagct attgagtact 1440 taaagaatac ttggatacca cacaagaaga gatttgttaa agcttggaca aataatctac 1500 ttcaccttag aagtgttact acatcacaag tagagggtca acattcagca ttaaaatcct 1560 acttaaaagt ctccaccaaa gaccttagag aagttcaaat ttctctctta cttttttgag 1620 aatacaacaa gagaattgaa ggctcaagaa agttcaaaac aaatccatat tgctcatcaa 1680 cacaatattg gtttcttcac caatgttgtg aaacatgtat ctttacatgc tcttaatctt 1740 gtccttgagc aatataaaca agcaagagca aaaattgatg aacacaattt ttcttgcaca 1800 aggacaatga caaacacatt aggtctacta tataagcatc aaataagaat tttattgaga 1860 agaagagatg ttttgtcaat tagtgatttt catcatcaat actacttagt aaatactctt 1920 gaccaattta ttccaatacc acctacaatt ccattctctt ttgaaagttt atgtctactt 1980 tatgttgctg ttagtcaaac ttttgatgtt ttacttcttc accaacaaga gaatctacat 2040 aaaagattgg ttgagctttc aacaataatt gtgcaattga aaaatctaca agtgagttgc 2100 ccaaaggaaa gaccacaagg agcaagaaat agaaccagaa gtgacatgca tgcaaaaaca 2160 tcaacacaac gatctgcatc acagtttgaa actatagaag caagaacaag gaggcacttt 2220 tgcagcaact gcaagtcaat gggacataat atctgcacat gtcctacaag gacaactttt 2280 tcctcgcaat tgtctacaaa taatatacaa acagagtaga attcaacaat atgctagcaa 2340 aactattttg aaaaagtact acatatagtc atttgaaaaa ttatagatgg ttattacttc 2400 aagtgatatt aattatcaat ttatttcata ctaataaagt aaaagacaga aatggattgc 2460 tcaaaacctt caatgccaaa ggcattaatg tcgcagatcc ttaatctgtt gaatcaaaga 2520 gcactctcat ttgttgctcc ataatgagag caatctagaa acaatatcta ccaagttaca 2580 tgctacaaag acaatcttag aagaaggatt cttgaaagcc actagatcat aaaccataat 2640 aataagttga aaaatcaggt gcgattgact caaaacatct ttcgcgggga agttgcaaaa 2700 tggacaagaa aatcaaggca accaacagta aaaaaattat aggattggca cgaattattt 2760 ttgaacaagt gaatagatac tctacctacc aaacatattg caacatattg atgagaaaag 2820 cccttttaca catttgtgtg aataaaagct cataaaaatc agcaaaaata caaataaaaa 2880 atgcaacctc ttaccgtcct tgggttctgt tgccatccaa aaagatctct tatagtcatg 2940 gctcaaatgc tacaaacaac gacaccacct ccctattctt ctgcaaagaa ccagcttcaa 3000 ctcttacaac aacagcttca accattttca ttgtgttcct tatcagatca gcctaaacaa 3060 acaagctcac aaaagtgaat taaaaaccca ccttcagaac cttcttaaac actcaaagga 3120 ctcgattttg gatcgcaacg atctaaataa tactgcagca agccacctca ttatgaattt 3180 gaaggattgt agtagtaaag ttggtgatac tttaaaacga agggtctgga catcgatccc 3240 atgtctgatt tcattgaggg atgcagctgc aattaaagat atttttcttc aatatgattg 3300 agtcaccatt acaagtaaca atttttataa agcaaggtgg ccagaggagt taaatttgga 3360 tggaatactc caaatcgaca aagataacaa gttcatattt ttattagctt tctttcttcc 3420 cttccttgac aaagtgagaa ccaagaaaca gcaacaacaa agttagccca agatactagc 3480 cagacttgca gaagtagtcg atgataatca catcatgatc ggacatggtt tgggctttca 3540 cagctgatac atccatcaaa gtcacaagct ccaactcttg agtcacaacc atattctttt 3600 acaagaagct aacaactagc aaaacaaaga ctttgatgga agcattgtga catttcagat 3660 gcagagaccg ttgtttgaca agttctgaac ttatgcctaa taggtcaaca ttagtataat 3720 ctgcacaaaa gatccagcag cagcaatgtg cgaagcccac acaatgacac acsgacattc 3780 tttagtttat gtgatgacta attaggtttg aaaattgtct cttagtagta tcaacaatat 3840 tgaaagcaga gaccaagtgg agagtagcaa ttttaaggca ttggttcttt ctaaacattt 3900 attttgggag gtgattattt gacctagatc atcctttggc atggcaccta aaataaaaag 3960 atactatttt ttcttctttt attcacttca aggaataaat ataattatca agaaaagatt 4020 agcaatttga tgcaacaaat tcactacaaa acttggagat ccagacatta ttttcatgcc 4080 ttgtagcata caacaagggc tacagtctaa tagacacagt gcaaaaaaaa gccaagcatg 4140 tggtcgagat acaatatcaa ggtccctctc tattgtggtc acagaaagca tcatcgccat 4200 atccaagctc ctcccttcaa ctggcttact tgtaaccaac atgcatagca tcaagttttt 4260 gtgtattcca tatatctcac ctccaagaac aaatggcgtg cttgtgcaat aatctgaatg 4320 ccattcacaa ggtccctcaa ttttgaaaac tctgacttct ttgatgccat caccatcccc 4380 ccacctttcc tgtgtcaaag cactgcacac agccagccat cacacattgt acctcagaga 4440 gagagagaga gcatacaatt gctgcaacaa tgactccatg ttttcaatcc acaatcacaa 4500 aatctcaatt ttaggaggaa aaaagatgct gatcacagtt gcaacaacca ctacctagtc 4560 aacctctagg aawatatatt attgcagact tgggaaggaa gctcactaat cagcacatgg 4620 atgttgtaaa acaacagctg ctattgctgg tccatgaacc acagcattaa tcgtacatta 4680 gatctccagg ttgatttcga caacaattgg caagcctcaa gctctcatcg accccgtaca 4740 aacactggga ggcttccaaa agctggtctt tgcaacaatc attgcagaag tttttgcaac 4800 atacttccga gatcttgcat tgaagtgtga aggtggcagg gaagccatgc ggagagagga 4860 gggtggcagg aagccatgca gagagaaagg tggcaaagaa gagaaggcca acccagccct 4920 catcccaaca aggcacggag caatgagata aacttgtkgc aggtccctcc ttcttttaaa 4980 caaataatta ggattctata attaaggact accacggcta ataattgtgg acggcagcaa 5040 tgaagattaa attatcatga ttgtggatga atgtgctttc ttttcattgg ttgcagatct 5100 aatagtagag aaatgaatct agaggtaatt attttttcat gattgtgatg atggatgggt 5160 tgctttagta aaaatttgga tcgctttatc attccc 5196 // ID Gypsy-32_PSo-I repbase; DNA; PLN; 7738 BP. XX AC AAQY01000598; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_PSo_; KW Gypsy-32_PSo-LTR; Gypsy-32_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7738 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000598; Positions 46926 39189. XX CC 'CTAT' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 111..1025 FT /product="Gypsy-32_PSo-I_4p" FT /translation="MTQGDPREQQDSASEGFHSAGSADGDQAATNPTPTGA FT VPGGQPSVPVPATMAAPAAMTVPTGTVEQAATTATTATTAASASTVPSAAT FT TNPARPTLPDVTTPEGLAAARDLLQRALDITSRHAGQTSGQSWATTRPNPV FT AQATATRVPTSTAPSAAPTATPQVAGGGFIPLPGSIPAVPAPTTSTGSGAP FT SVGKLTRRPLRGLQRRRRPASCLRRNLPSLRGTLRCPRQEWCLRLSRAPLG FT WRTRHLRRTLFIPRLRVRLRCPLRPRSRLRASGPPLRPMTASLSRESLPPL FT DTASACRRWGYGS" FT CDS 5818..7131 FT /product="Gypsy-32_PSo-I_2p" FT /translation="MIRKPDGGIRFSIDYRRLNAVTIKDCYPMRLIDDILD FT VLKDAKLFSTMDIASGYWNVPMVAGSVEKTAFTCKYGLFEWLVTPFGLYNA FT VPAFERLMENVLVDLKWRTCLVYLDDCVVFSTDFPTHLVRLKQVLERFRAA FT GFKLKMKKCKWGRDQVAFLGHIITPSGILPNPEKVKAVMNVARPHDLHSVR FT AFLGLTSYFRRYIPGYAAISAPIERLKVKGVDFAWNDDCEAAFLQVKRRLV FT EPPILVYPDFSKRFKLYVDSSHLAVGACLMQTVDGRERVVAYASKLLVGSE FT RNWIHKQNGASEIECWGIVWATRKFRCYLDRNEFDLYTDHKALTWVFSEGN FT RTSNAKLARWAMELSPLRFKVYHKPGTAMGHVDGLSRLHSQTICALSMAEL FT LNDDSESEGDRLGAVGEGSNPASPPRAYPSRPPKSSRALDDQEV" FT CDS 4320..5870 FT /product="Gypsy-32_PSo-I_5p" FT /translation="MAAVTAQILDRYETKAPVMRAKRAERQQLCECHRAAS FT DVLSRRHRSRREVHYDCTSLFCRRSEAFGSNPSFTEDGDDTSHYVCSVRDP FT DGGIRLRKPGLVEVSDADAADTDEEDPVPAGKRVICSVGGIETVSAGFIED FT LPAELLIDSGAIASLVESRVLTRLGLTDAPLRSYHGRVNAVPGHKLRIRGE FT IDLPLCLGTLKTMRPFVVVDHLHVDSILGTDTLKAFRAVIDLDESTMTLKD FT TGEVLPLGTPRVEETYVSRIASTVRICPGGLALVASDVVGKAPENTTVLIE FT GLPELDENMKVARTLCSIREGKTIVEVCNASTEELVIKKGTALAIATVVPK FT SALALVDAKKRKKTSLDPNESSEPVSSSGNSRWIDAVIGAAAAKSPASREP FT MPGLKDAMDAGLEPDFSDSKLGKEQRGLMKDLLDSFRYMFVETSLKPGRTH FT LLEFSIDTGTNPPIKQPPYRVSHAEGEVMEFRDTAVPGAGADPTVYEPLGQ FT PRTHDPQARRGDTFLYRLPTA" XX SQ Sequence 7738 BP; 1631 A; 2294 C; 2427 G; 1386 T; 0 other; tttggtggag aagcagggta cgctgctaac tgaagaagga cttgcgcggt gcaagtgact 60 gaagaaccct cgcctgagac gactccgtca atcggcgctc actgctgatc atgactcaag 120 gcgatccccg cgagcagcag gactcggcga gtgagggctt ccactcggcc gggtctgctg 180 acggcgacca agcggcgacg aaccccactc cgacgggggc tgtgccagga ggccagccga 240 gcgtgcccgt gcccgccacg atggcggcgc ccgctgcgat gaccgtgcct accgggacgg 300 tggaacaagc tgcgactacc gcgacgaccg cgacgaccgc ggcgtccgct tcgacggtgc 360 caagtgcggc gacgaccaac cccgcgcgtc cgacactgcc ggacgtcacg actcctgagg 420 gtctggccgc cgcccgagac ctgcttcaac gtgcgctgga catcaccagc cggcacgctg 480 gccaaacctc tggtcagtcg tgggcgacga cgagaccgaa ccccgtggcc caagcgaccg 540 cgacccgcgt gcccacgagt acggcgccct ctgctgcgcc gactgcgacg cctcaagtcg 600 ctggaggagg attcatccct ctgccgggaa gtattcccgc tgtgcctgcc ccgactacgt 660 cgaccggatc tggtgcccct tcagtgggga agctcactcg tcggcccctg cgtggactgc 720 agcgccgtcg acggccagcg tcgtgcctca ggcgcaacct tccgtccctg cgtggaacgc 780 tgcgctgccc gcgtcaggag tggtgcctcc gactcagtcg agcgccgctg ggttggcgta 840 cacgccatct acggcgaacg ttgttcatac cccgactccg agtacgactt cggtgcccac 900 ttcggcctcg gtcccgactc cgcgcctccg gtccgccatt gcggcctatg acggcgtctc 960 tctcgaggga atccctgccg ccgctggata cggcttcggc gtgtcgccgg tgggggtacg 1020 gttcgtaagt gccccggacg cggcaccttc tcggtctacg tggactgctg catcgacggg 1080 cagcgtgccc gcctcgaacc cgtccgtgcc tccgcctgtg tacggcgctc agactccaat 1140 gagtcaagga gctacgggtc cgatcgcttc gacgtactac ggaggaatgc catcgcacat 1200 caataacgcg gtgaggatga tccagccgtt ccactcggac cacgccacgg ccgacaaggc 1260 caagttgttt tgggacccgt tcgcccgagc cacgaccgga ctcgaggaac agttacgcat 1320 cagtgtgttc cgcgagtgcc tgaagggcaa acctgctgaa gagtggtgga tgtactccaa 1380 gatcgacagc ttcgagacgc tgcgcatccc gtttcacaac cagttcattt gccttagccc 1440 cctacaactg atcgaacgcc tcaagactac gaagcgtccc gcggcatgtc cgccgaggtg 1500 tggggtgatc tggtcaagag tctctgtgac gaggcctagt gcttcgatcc gaccatgagg 1560 taccagtact tcctgtcggg actgaggaac cgtgagtgga aggcggccct gtcgtctgcc 1620 atggcgagca ccatccagca agccgtgctc atcctcctgc agagaggcat gcacattccc 1680 gtcgaggacg acgcggactt cgcggacgat aagtcatccg agaagaagtc gaaggactcg 1740 gccgtgaagg agatgatgga gatgcttcgg cagaaccaga gcttgatcat gcagcagcaa 1800 gccgaattgg cgcgtgctcc gcggtccccg agacgtccca gctacgccgc ggtcgcgtac 1860 gagacccaac ctatcgtgcc gcctccgatg ccgaacgctc cgcctacgct gcctactgtg 1920 ccctacactc ctgttaaggg gatccgtcag ggacccgaca tgtacacgca agatgggcgt 1980 accgtgtgtg gccgctgcca catgctcgga tgcagccgga tcaactgtcg ccggcaacga 2040 ttcacctgcg ggaactgcaa gtagcaagga catgctacct cggagtgcga ggtcccggct 2100 cgaaaccaag gcaacaatgg tggtgggcaa ggacagcccc gtcgtcaagg tggcggtgaa 2160 ggcctgcgtc cgtgcttcgg gtgtggtaag acggaccact atgcgtctaa ctgcccggcg 2220 atcaagtcga tccagcaaat ggcggcgcag acgcaagctg ccgcccccgc tcagggaacg 2280 cagcctactc agcaatgaag ggggcacgag ggaggagagg ggagtgtcgc tccttcctct 2340 cgcccgtgga acgacaccgg gtggcgtacc ccgcgtacgg ctaccctgct gaccggcgaa 2400 gctcgccgag agactgagac tgtgggtacg gtaaggacca tgccgatcga tgactacaac 2460 gcgaacaaaa ctacgattgg aactgatacc acaatggtga agaggcctaa gtgcctggaa 2520 cgccccgcgc gtgaggcggt ggcgcccgga gctccgctcc gagaacgaac tggattaatt 2580 gggactactg cgacggctgc ggggcccgtt ctgtgggaac gccccgggcc tattgaacga 2640 tatgcggacg ctcctcgact ggaggagccg aagtacgaga ttgctacaac gactacaacg 2700 gaaaccgctc caaggacgga gccgggaact acaaagacta caacgggagc cgctccgagg 2760 gtggagctgg aaactacagt tgctgctact gaagttgctc caaggacgga gccggaagac 2820 gaacccacta ttactacgga agctccccag ggtgtggagc gtgcttgtga acctactgtg 2880 actaccgcag ctccccaggg tgtggagcgt gcctgcgaat caactactac tacaacaatt 2940 ggagcttccc agggtgtgga gcatgctgaa accgaagaat gccagcgtcg attgaacgct 3000 gaggaaaacg actttgtgaa ggacgccagt agccgcgtcc aggaaactac tacgaatact 3060 ttgtacgaga gcgtcatgcg atttgcgctc gagaaaccct cgctgggacc cgaactgagc 3120 gtggagcagg tgaactttat gccgcccagc gagaaacgga agagagacgt cacgggagca 3180 cctactgctt tggccgtgac cgtcaaggag gcgacaccgg agaacgacgt cgtcgggaac 3240 gctgacagcg agtcagacac ggaggaggaa cctgccggaa cggcagactc ggaccgctca 3300 ggtgagcaca gtcaaccgca tataaaggca cagcagggca ggcaagggcc gctctaaaga 3360 cgctgaatga ggacgcggaa tcggctcact tggagcgcgt agggtccgtg acggacggaa 3420 cctccgaagt ggtgaacgac aatgatgacg acagtgaagg actaaagacc gtcgcccaag 3480 atgggcagga cagggaagac gataaggcgc ctccatacaa gagattgttc acgcctgagg 3540 agctggatgc attggccgac ggccgtactc tgggtgcgca agaagaaaaa gaagagtacg 3600 acaaagaact agaggaacgc ttgatccctc tggacgaggt ggagctgctg aagaagcgag 3660 cccagaacgc aaagaagcag aaggaactca cgctggagga gctgagctcc ctgctgaacc 3720 tacccgtgga gaccctggaa cgaacgcgtg agtcgtcgcc cggagtgctg tccacgcccg 3780 agtattggat agactggtac cgaaggacgc ttgccgcgtc cgaggaagcc agacgtgcca 3840 accgcgactt ccgcgagacg aagcgcgaga aggagaagcc gccgcccatc ggctcggtgg 3900 tgcaaggcga ctcagacgcc cgagatggcg gaggtgggaa cgacttcatt ggagacgaga 3960 tcctcgcgtt actgaaggaa cgcgagtcct ccaagcctgt gaccccggac gaggaggtgg 4020 tgaggaggaa catctgcgtg acgttcgccg tccccgtcga ggtcgagccg cccgaagagg 4080 aaaacggttc cgacctgctc tcgcgatggc gtgcgctggt gaggactgtg gtctatcagt 4140 tgatcctcga ggacgaggct cgttgcgaac cccgctgcag ctcgtgtcgg aagccggcga 4200 ctggcttgcc gaccggcgaa tgccgacccg tagaaccagt attactaccc gcagttaatc 4260 gcgagccccg tgcccgcgaa ctagtcgtcg ctaccgctgg cgtgctcggc gacagcgtga 4320 tggccgccgt gacggctcag atactcgacc ggtacgagac caaggcaccc gtgatgcgcg 4380 ccaagcgtgc cgagagacag cagttgtgcg agtgtcaccg tgctgccagc gacgttctct 4440 ctcgacgaca ccgttctcgt cgcgaggtgc actacgactg tacttctctg ttctgcagac 4500 gctccgaagc gttcgggagc aacccgtcgt tcaccgagga cggcgacgac accagccact 4560 atgtgtgctc cgtccgagac ccggatggtg gaatacggct acggaaaccc ggcctggttg 4620 aagtgtcgga cgcagacgcc gctgacaccg acgaagagga ccccgtaccc gctggcaaac 4680 gtgtcatttg ctcggtgggg ggcatcgaga ccgtctccgc tggtttcatc gaggatctcc 4740 cagctgaact gctcatcgac tctggtgcaa tcgccagcct ggttgagtcg cgtgtcctga 4800 cccggcttgg gctcacggac gcgccactgc gatcgtacca cggcagggtt aacgccgtgc 4860 ccggccacaa gttgcgcatc cggggcgaga ttgacttgcc gttgtgtttg gggacgctga 4920 agacgatgag gccgttcgtc gtggtcgacc acctgcatgt ggactcaatc ctcggcacgg 4980 acacgctcaa ggcgttccgc gccgtgatcg acctggatga gagcactatg accttgaagg 5040 acactggcga ggtcctcccc ttgggtactc ctcgcgtcga ggagacgtat gtctctcgca 5100 tcgcgtcgac agtgcgcatc tgccccggtg gcctggctct ggtggcctcg gacgtcgtag 5160 gcaaggctcc ggagaacacc acggtgttga tcgagggact ccccgagctg gacgagaaca 5220 tgaaggtcgc ccgaacgctt tgctcgatac gagaaggcaa gactatcgtc gaggtatgta 5280 atgcctcgac agaagaactc gtcattaaga aggggaccgc gttggcgatc gctacggtcg 5340 tgcccaagtc ggcgttggcg ttggtggacg cgaagaagag gaagaagacc tccctggacc 5400 cgaacgagtc ctcggagccc gtgtcttcga gcggcaactc gaggtggatc gacgctgtga 5460 tcggtgcggc ggccgccaag tctccggcct cgcgtgaacc gatgccaggc ctgaaggacg 5520 ctatggatgc cgggctggag ccggacttct ccgactccaa gttgggcaag gagcagcgag 5580 gcctgatgaa ggacctgctc gactcgttcc gttacatgtt cgttgagacg tccctcaaac 5640 cgggacgcac gcatctctta gagttctcga ttgatacggg tacgaacccg ccgatcaaac 5700 agcctccgta ccgcgtctcg catgccgagg gtgaagtgat ggagttccga gatacagcag 5760 tacctggagc tggggctgat ccaaccgtct acgagccctt gggccagccc cgtactcatg 5820 atccgcaagc ccgacggggg gatacgtttc tctatagact accgacggct taacgccgtg 5880 actatcaagg actgctaccc gatgcgactt atcgatgaca tcctcgacgt gctgaaggac 5940 gcaaaactct tctctaccat ggacattgct tccggctatt ggaacgtccc gatggtcgcc 6000 ggtagcgtgg agaaaacggc gtttacctgt aaatacgggc tgttcgaatg gctggtgacg 6060 cccttcgggc tctacaacgc agtacccgct ttcgaacgtc tcatggagaa cgttttggtt 6120 gacctgaaat ggcgcacctg cctggtgtac cttgatgatt gcgtggtttt ctctacggac 6180 ttccctacac acctggtacg cttgaagcaa gtattggaac gcttcagagc ggccgggttc 6240 aagctcaaga tgaagaagtg caagtgggga agggaccaag tggcgttcct gggacacatc 6300 atcacgccgt ccggcatcct gccgaacccg gagaaggtca aggccgtgat gaacgtggcc 6360 agaccgcacg acttgcactc cgttcgagca tttttgggac tcactagcta cttcagacgc 6420 tatattcctg gttacgcggc tatttctgct cctattgaac gcttgaaggt gaagggcgtg 6480 gacttcgcgt ggaacgacga ctgcgaggct gctttcctgc aagtgaagag gcgtctcgtt 6540 gaaccgccga tcctagtcta ccctgatttc tcaaaacgct tcaaactcta cgtcgactcc 6600 tctcacctcg cggtgggagc ctgcctgatg cagactgtgg acggccgtga gcgtgtggtc 6660 gcctacgcga gcaaactgct cgtcggctcg gaacgcaact ggatccacaa gcagaacgga 6720 gcttcagaga ttgagtgttg gggaattgtg tgggcgacac gcaaattcag gtgttacctg 6780 gacaggaacg agtttgatct ctacacggac cacaaggcac tcacctgggt gtttagtgag 6840 ggaaaccgca ccagcaatgc caagctggca cgctgggcga tggaactgtc tccattgcgg 6900 ttcaaggtgt accataagcc ggggacggcc atggggcacg tcgacggact atcgaggctg 6960 cactcgcaga ctatctgcgc gctgtcgatg gcagagctgc tgaacgacga ctcggaatct 7020 gagggtgacc gtctcggcgc agtcggggag gggtccaacc ccgcctcgcc acctcgtgcc 7080 tatccttcgc gtcctcccaa gtcctcccgt gccctggacg accaagaggt ttaagtgcgc 7140 gagactctga cggaattgac ctcgtgaaat atgaccgaag cgatcgcctg ggaacacact 7200 ttgcggtgag gaggctgaca gttgtccgag ttgtttcagt tgctgcagct tggagagaat 7260 acgcgcctcc aaagcaggag gaggctttcc ggtggagaag ataacgctta atgccgcgaa 7320 ctacgtcctc gagtggacgc cgtacggacc ccctgtgacc gtgctgatag tgactgcggg 7380 cgtcgtgact cacatttggc gtggctgcga caaccagaag gacgccgacg aattctcgcc 7440 tacgggcatg atcattcgcg ggctcaagga cctgcgagcg agggctgctg aacgcgaacg 7500 ttcggagaag gagagcctgc aacaactgcg aggcggtgac gctgcagaag accaagctac 7560 ctatactgac gccgtggacg gcgttgaagt gaccatcgat gaagaagctc ctcctcgtgc 7620 tcatgcggct atctctgccg aattgcgtgc tgccgaggaa cgatcggctc tcctacgact 7680 cgagctcgcc cgtcacccgg aggtccgtcg aggacgacga acgtgcggtc ggggagga 7738 // ID Gypsy-1_ES-LTR repbase; DNA; PLN; 258 BP. XX AC CABU01002760; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_ES_; KW Gypsy-1_ES-I; Gypsy-1_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-258 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01002760; Positions 298024 297767. XX SQ Sequence 258 BP; 65 A; 78 C; 57 G; 58 T; 0 other; tgaatgccac ctcagactgt agtagattgt gacgtcagat gacctgtcgg agatctacct 60 tcggggtgtt gccacagata gagtcagtgt cggatggatg ctgaaccttg cttcaacaca 120 agattgctcc cccccttgac tcacaacaca actatccgta ctcgtcagcc tcttcaccag 180 aggttgaacc ggtgtgtatc cacaccacac atcccaacgg gaacttgctc acacgcgaac 240 ctggagacaa ccgtctca 258 // ID Copia-4_ES-LTR repbase; DNA; PLN; 216 BP. XX AC CABU01009301; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_ES_; KW Copia-4_ES-I; Copia-4_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-216 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01009301; Positions 23420 23635. XX SQ Sequence 216 BP; 46 A; 66 C; 44 G; 60 T; 0 other; tgcgtgatgc ttggtagccg agtagctcac tctctcgtgt gatccttccg gattgtgttg 60 gccatctaag cgccagtgtt ccaatatctc tacatcttct tcactccgtg gaaggactct 120 cgtcttccag actaccctct agcacgtgtc atcacctcga ctaacgtcga agatacagcc 180 tctacaccac ggtgccaggg tattacacaa tatcca 216 // ID RTEX-5_VC repbase; DNA; PLN; 5325 BP. XX AC . XX DT 26-FEB-2010 (Rel. 15.02, Created) DT 26-FEB-2010 (Rel. 15.02, Last updated, Version 1) XX DE A family of RTEX non-LTR retrotransposons - a consensus sequence. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-5_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-5325 RA Kapitonov V.V. and Jurka J.; RT "First examples of RTEX non-LTR retrotransposons found outside RT metazoans."; RL Repbase Reports 10(2), 143-143 (2010). XX DR [1] (Consensus) XX CC RTEX-5_VC belongs to the RTEX clade of non-LTR retrotransposons. CC The consensus sequence is <1% divergent from several CC copies of RTEX-5_VC. The 3' terminus is composed of the (CA)n CC microsatellite. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user CC community. XX FH Key Location/Qualifiers FT CDS 14..1309 FT /product="RTEX-5_VC_1p" FT /note="ORF1." FT /translation="MDNSYTEYLARARGNPDGPITAGMLLALYGDFRKLGD FT QVLDLKNEQQLSRVEIIDLQGRVSKLETDPSGITMDARGLISSNKFFYWDS FT VVITTDKNKDEGSVRACLAELGLHALDIGLLTRTERPDRSTKSWLIDIRWK FT DRVKFFKAAPDLKRLGLRVDDSLTKEGRAERSRLRPMWQVIKAKQWIPMWR FT NGAELFYKKSPNGSAPVPYPSQYGDDDSDSGEGGEMDAENDDDVNMPFRGC FT AGGVGATGSGSAAAGGSMPPPPPPPPPPPPPKPMAPSPAAPPPAPPSYRKQ FT LGVKNREAPVASLSAIKAKGGKHPRTEPVYGLTYSASPSRLDRSHNQAPAP FT RDPRPSSAAGRTMDIDGFITTSGRRSSKDQDRDGHGETGQQGLGVDEGTTR FT SREGRAGPSSRADHRPYDQAGKQTSANRFAGLPAEVDD" FT CDS 1313..5185 FT /product="RTEX-5_VC_2p" FT /note="composed of the APE, RT, and CCHC domains." FT /translation="DSTSRGPRGLRVLLWNVHGLLEAGVFKLDRAGIKSFV FT TSHDLIIVTEAHLTDAVPDSDVSLEGFRLMRVQRSGDAVRADYGGVALYVR FT DTASHGVTIVRKNNSLAGCEVLWIRVNLLSGNSLLVGACYLAPETSRVYPA FT GGATNAQRAAAAEAAFARVQQDISELRQPGEDVMLAGDLNARISSAQHTKH FT RSSPADLPGYVSDVPDLDQLTALQEFMGLPGDTDPQGYTDVPGRRSEDLVC FT NFAGHQLGALCRSQGLLVLNGRVSGDLEGRLTFPKGEAGGSMIDLFVGSAG FT VLRHAYWMRVGELLAPDGWFPTDHRPVTLVLGLAVGGTGTSAKGCCQKKRA FT VFEISRYRDYAALFTDGSQVMHALNGVITDLSNGACNSTESVERISTLLRK FT VLIRVFAGRRPEGMQAGGGALWWNEECQSVRQHMLACRVRLGPGRVENKSG FT PLWEAFCKARNAMNRAKRRARAAYDAERMREFVVRCRHDQRALWRALGGQL FT KERCAIDDLHVFRDHFATLLNAGVGETGVEGAHRLLNYISFFGAPLGEGAW FT QACRTVMDRRARAASILDEPFTLEEVARAVGRLPNGKAHGLEAIPSECYRY FT ARLPRVDEQGRQGTEVNCIVPVLHVLLEHIRATGDFPQQFTKTVVSPILKK FT GDPLVAGNYRGIAVGGALAKCYASVILNRLVRAGEILDLRHPCQAGFRRGF FT GTAHHLFVKQHLVRRHRIAGQPPLIIVQIDFEKAFDRVPREHMWLRLQERG FT ISGPMLGALRKAYEKVSMVMKVNEKVGGEFESKQGVKQGCPLSTELFGLFI FT ETLADLIDTHDLVEAGARKCDAPLVDSKRVSILLYADDVSLLATSVERMSE FT LLHLVDLFCEAFGMRPNVSKCERLVFACDGTQQSELSGRCQQLRLSGQVVP FT AKDSARYLGLVYGPERPFSACRQQLCDTGRSAMFSLSAKLDKMKLFAPDVR FT MRCFATQVRAILLYGCQAWGPFALAEVVDRAGRRRDKANLAEGMFEACLKD FT SAVQLQILFMRQVVGTARPSHRLLYAELAELPLQYYMVKQILRFWNRLQKQ FT VGSIAHAVLRQEITDALTNPEWEGWGISMLRLFSFLECNIWSGIPQEVVGV FT KERVDWLLSRPLPEGAIITALRERLMSGWDHTRLTVLPEEYPSDGKQPGVQ FT MAKYKHWMGLPFSGAAAVMWPTHAKVFIPRLAHRKLMQFRLCCWALEANRA FT RRGKYHVPRGQRFCHCCGPNSRIEDEKHVLLECPAYNDIRAEEGFDHQQSM FT LEAMQWEPARLARMLERMWAHRNSITPFGR" XX SQ Sequence 5325 BP; 1212 A; 1295 C; 1655 G; 1163 T; 0 other; attgcaatac agaatggaca acagttacac agagtacctg gcaagagcgc ggggcaatcc 60 cgatggtcct atcactgctg gcatgctctt agccctctac ggggacttca ggaagctcgg 120 ggaccaggtg ctcgatctaa agaatgagca acaactctca cgcgtggaga tcatcgatct 180 ccagggccgg gtcagcaagc tggaaaccga cccgagcggc atcacgatgg atgcccgcgg 240 actaattagc agtaataagt ttttctattg ggacagcgtc gttatcacga cggacaagaa 300 caaggatgag ggcagcgtcc gggcctgcct cgccgagctg gggctacatg cgcttgatat 360 cggccttctc actcgcactg agaggccaga tcgcagcaca aagagctggc ttattgatat 420 ccggtggaag gaccgggtaa aattctttaa agccgcacct gacctgaaaa ggttgggtct 480 ccgggtagat gactcgctca ccaaggaagg gcgggcggaa agatccaggc tgcggcccat 540 gtggcaggtg ataaaagcga agcagtggat ccccatgtgg cgcaacgggg ccgaactgtt 600 ttataagaag agcccgaacg ggagcgcacc ggtgccctac ccaagccagt acggtgacga 660 cgacagcgac agtggagagg gtggagagat ggatgccgag aacgatgacg acgtaaatat 720 gcctttcagg ggctgtgccg gcggagttgg cgctactggt agcggtagtg ccgccgccgg 780 tggcagcatg ccgccaccac caccaccgcc accaccacca ccacctccca agccgatggc 840 accgtcacca gccgccccac caccggcccc accgtcttac agaaagcagc taggggtgaa 900 gaatcgtgaa gcacccgtgg cttcgctgag tgccatcaaa gcgaaaggcg gcaaacaccc 960 acggacagaa ccagtatacg ggctcacata ctcagcatca cctagtaggc tcgaccggtc 1020 ccacaaccag gcgccagcac cccgtgaccc gaggcccagc tctgccgccg gccgcaccat 1080 ggatattgac ggcttcatta ccacctcagg gcggaggagt tccaaggacc aggatcgaga 1140 cggccatggt gagaccggcc agcaaggtct gggggtcgat gaagggacaa ctagaagcag 1200 ggagggacgt gcagggccca gcagcagagc tgatcaccga ccgtatgacc aggctggcaa 1260 gcaaactagt gctaaccggt ttgcaggcct acccgcggaa gtggatgact aggatagcac 1320 gagccgaggg ccaagagggt tgagggtttt gttgtggaat gtccatgggt tgttggaggc 1380 aggagttttt aagcttgacc gtgccggaat caagtctttt gtgactagtc acgacctcat 1440 cattgttact gaagcacacc taacggatgc agtgccagac agcgatgtgt ccctcgaagg 1500 tttccgcctg atgcgggtgc agaggtcagg agacgccgta cgcgctgact atggtggggt 1560 tgctctttac gtgcgtgata ccgcctccca tggggttacc attgtccgga aaaacaacag 1620 tcttgcaggc tgtgaggtcc tgtggatacg tgtcaacctt ctgtcaggaa acagcctcct 1680 ggtgggggcc tgttaccttg cgcctgaaac ttccagagtg tacccagccg gaggtgcaac 1740 taatgcacag cgggcagcag cagcagaagc tgctttcgcg agagtccaac aagatatttc 1800 tgagctccgg cagccggggg aggatgtgat gcttgccggc gatctaaatg cccgtatatc 1860 tagtgcacag catacaaagc accggtcctc gcctgctgac ctgcccgggt atgttagtga 1920 cgttccagat ttagaccaac tgacagcact gcaggagttc atgggcttac cgggggacac 1980 ggacccccag ggctacacag acgtgcccgg acgtaggagt gaagaccttg tctgcaattt 2040 cgctgggcac cagttgggcg ccctgtgccg atcacaaggg ctgctggtat taaatggccg 2100 tgtttctggg gatttagagg gtcgtctgac cttccccaag ggtgaagcag gtgggagcat 2160 gattgatctt ttcgtaggtt cggccggtgt tctccgccat gcctattgga tgcgagtggg 2220 cgagctactc gcgccagatg gttggttccc gactgaccac cgtccagtga cgctagtgct 2280 tggtctagct gtaggaggaa ctgggacgag tgccaaaggg tgctgccaaa agaagcgagc 2340 agtgtttgag atttcccgtt atcgtgacta tgctgctctg ttcactgatg gatcccaggt 2400 catgcatgca ctaaatgggg tgatcacgga cctatcgaat ggggcctgca acagcacgga 2460 gtcggtggag cgcattagta ccctcctgcg gaaggtgctg attcgagtat ttgcgggtcg 2520 caggcctgag ggtatgcaag cggggggtgg tgcattatgg tggaacgagg aatgccaaag 2580 cgtccggcag cacatgcttg cctgcagggt gcggcttggc cctggcaggg tcgagaataa 2640 gtcaggcccc ttgtgggaag cattctgcaa ggcacgtaac gcaatgaacc gtgccaaacg 2700 tcgtgcccga gcagcatatg atgcagagag aatgcgtgag ttcgtggtaa ggtgcaggca 2760 cgatcagcgc gcactatggc gggccttggg agggcaactc aaggagcgtt gcgcgattga 2820 tgacttgcat gtatttcggg atcattttgc caccttgtta aatgcagggg ttggggagac 2880 gggtgttgaa ggtgcacatc gactccttaa ctatatctcc ttttttgggg cccctttggg 2940 agagggtgct tggcaagctt gtcggactgt catggacagg agagcacggg cagctagcat 3000 cctggacgag cctttcacct tggaggaggt agcacgtgct gtcggtaggt taccaaacgg 3060 aaaggctcac gggcttgagg ccataccatc ggaatgctac cgttatgcac gcctcccacg 3120 ggtggatgag cagggcaggc agggaacgga ggtgaactgt atcgtcccag tgctgcacgt 3180 tttgttagag cacatcaggg caactggtga ttttccacag cagtttacca aaacggtggt 3240 atcccctatt ttgaagaagg gtgacccgtt ggtggcagga aattatcggg gcattgcagt 3300 tggaggagca cttgcgaaat gctatgcgtc agtgatcctt aaccgcctgg tacgtgctgg 3360 ggaaatactg gacctgcggc acccatgcca agcgggtttc aggcggggtt ttggcactgc 3420 tcaccacctc tttgtcaagc aacacctggt caggcggcat cggatcgcgg gacaaccgcc 3480 gttgataata gtacagattg actttgagaa ggcctttgat agggtgcctc gcgagcacat 3540 gtggcttcgg ttgcaggaga gggggattag cggccccatg ctaggtgctc tgagaaaagc 3600 gtacgagaag gtgtccatgg tgatgaaggt aaatgagaaa gtggggggag agtttgagtc 3660 taagcaagga gtgaagcaag ggtgtccttt atctactgag ttgtttggac ttttcatcga 3720 gacactagcc gatctgattg atactcatga ccttgtagaa gctggtgcac gtaagtgtga 3780 cgcacccctt gtggacagca agcgcgtctc catactgttg tatgcagacg atgttagtct 3840 gctagcgacg tcagtagagc gaatgtctga gttgctacat cttgtggact tgttttgtga 3900 agcttttggg atgcgaccaa atgtctcaaa gtgtgaaagg cttgtttttg catgtgacgg 3960 cacccagcag tcggaactta gcgggagatg tcaacagtta cggctatcag gccaggtagt 4020 acctgccaaa gatagcgctc gctatctggg cttggtatat gggccagaac ggccttttag 4080 tgcgtgccgt cagcagttgt gtgatacagg tcggtccgct atgttttcct taagcgcaaa 4140 gctggacaaa atgaagctgt ttgcccccga tgtgcgaatg cggtgttttg caacccaagt 4200 ccgagcaatt ctgttgtatg gctgccaggc gtggggccct tttgcgctgg cagaggtcgt 4260 ggacagggcg ggaaggcggc gggataaagc aaaccttgcg gagggcatgt tcgaagcctg 4320 tttgaaggat agtgcagtcc agctgcagat tttattcatg aggcaggtag tggggacggc 4380 acggccatcc cacaggctgt tgtacgcgga gctggctgaa ctccccttac aatattacat 4440 ggtgaagcag atcctccgtt tctggaaccg ccttcaaaag caagtgggat ccattgctca 4500 tgcagtttta cggcaggaga taaccgatgc cctgaccaac ccggaatggg agggttgggg 4560 aatctcaatg ttacgactgt tttccttctt ggagtgcaac atttggagcg gaataccgca 4620 agaagtcgtg ggggtaaagg agcgtgttga ctggttgttg agtagacctc taccagaagg 4680 agcgataata acggcactaa gagagcgttt gatgagcggc tgggaccata cgcgtctgac 4740 tgtcttgcca gaggagtacc catcagatgg gaagcaaccg ggagtgcaaa tggcgaagta 4800 taagcactgg atggggctgc ccttttcggg agccgcagcc gtcatgtggc caacacatgc 4860 taaggttttc attcctcgtt tagcacatcg taagctaatg cagtttcgtt tatgttgctg 4920 ggctttggag gcgaacagag cacgaagggg caagtaccat gtccccaggg ggcagcggtt 4980 ttgccactgt tgtggtccta atagccgaat tgaggatgaa aaacacgtgt tattggaatg 5040 cccagcctat aatgatattc gtgctgaaga gggattcgat catcaacaga gtatgttgga 5100 ggccatgcaa tgggaacccg cacgtctggc gaggatgttg gaacgtatgt gggctcaccg 5160 aaactcaatt accccctttg gacgttagtc tgggctgatg tgcggtgttt tttccttttt 5220 ctccgtggct tttaggcgtt gtagtattgc ccttgggccc tcggctcgta tgggtagtct 5280 tacaggtatg gggtcacgca cccccaacca tgtaacacac acaca 5325 // ID Gypsy-41_PIT-I repbase; DNA; PLN; 4140 BP. XX AC AATU01002423; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-41_PIT_; KW Gypsy-41_PIT-LTR; Gypsy-41_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4140 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002423; Positions 20983 25122. XX CC Positions [3341-3829] - Integrase core CC 'ATAT' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 82..2874 FT /product="Gypsy-41_PIT-I_1p" FT /translation="MDEMNRADKGVVFQVTTRESTYNTEREYVKISLPRFS FT GGTAQDWLKWSHKFGRLCQLKKWAPEEKDLNLQLVLENEALEAWQTASEDK FT DMNSVAQFTKAYALWGRTYVPKAYNEQLEEDLFMFAKRRNETVSQCHRRMR FT EIARMLRDLPTNPMNLDDKSMIRYFKRAMPRDWRHAYECSGITFSSMPQSV FT QYFERLEQSERREGQENKGKPKASKPNKQYGNYHGKNSSHTKWNNNHTSKA FT SSSNNAELSGKWCKLHKTASHSDQECFTQKMNDKNSYNQKSATKKSENRKL FT TKVDDTESDYNYSDESEGKIITSAMNEASKSVGRPMRLGIRLSQTKEKRVA FT LLDTGCTTSYINASLVTANKQLGVKKTPSTMTFEQVDGKLKSDGTMVVKFR FT FLDLNYGSRITHQFEVIENTKDEMVIGRDLLSALGIIVSFRDGKVEWNGNS FT VVVNMGNAGTYQEMPDKKPKRHLPVELKGGEILDEVKDINDTSVKPMDLIG FT DADIDQETYDQVVKLLASFEMLYNGHLGKMKLPDYVLPIVEPFTPVHARPY FT SVPRSEEDAARKEIHRLITVDVLEQIFDSEMASPAFFLKKPDGRLRLLTDF FT RALNRFLKRHPYYVPLIREVLAKLGGAKYFSSLDANMGYYARQLAKISRKY FT TAFCTPWGKFQYKRLPMGISTAPDEYQASMMKILGDFDFVIVYLDDILIFS FT KTAKDHVEHLRVVLKRLKEYNVTLDGKKCHIFCKSVDYLGFTLSADGIQPQ FT EKKISAITRLTAPRTKRELRRFLGLINYYREMIPHKSALLKPLTRMTSPKA FT TFVWTSTENEAFEGIKKALAEAVLLSFPDFSKPFDIYADASGKQLGGLIQQ FT DGKLIACFSRTLTEAQRNYTTMELELLSVVEILKEYRTILLGFPVVVHTDH FT KNLIYPTENSLRVKRWKLLLSEYRVDM" FT CDS 2924..4114 FT /product="Gypsy-41_PIT-I_2p" FT /translation="MECTSVSNENRSQLSRALFSEQGECVLEGDYIKQFQS FT TDKMVQVLLQKCVNGTSDPDYRVENTMGARLLTYQKRVVIPNAMREELVDW FT YHLNLLHPGSKRQFHTMRANFYWSGMEKTIVTYCKKCITCKKAKLHGGPQA FT YGKLPPRDLNRVDPFDVVHVDTMGPYGAERQYALTVIDEATRWLEVSIQTD FT SKGRTTAENFDTTWLCRYPRPKTVIFDRGNEFNTSEFREMLASYGIKPKAI FT SAKNPQANAICERVHLVLNNCIRCNPEADWRKVLQYAAFSARASYHTILGT FT SPANMIFGQDLITRKLYEANWNYLCKKRFDAILQENDRANSTRLQHFYQVG FT DHVMVRIPAKDRKNKHRNVANGPFTIVAVHDNGTITLDQGPTQQRVNIRRV FT FPC" XX SQ Sequence 4140 BP; 1258 A; 875 C; 1111 G; 896 T; 0 other; ctttgaacta gctcaaagta aaggacggaa ctagaggata agttgtagga cttctacaac 60 gggtgaagac caagcaagac catggacgag atgaaccgcg cagacaaagg cgtggtattc 120 caggtgacaa cacgggagtc aacgtacaac acggagcgtg agtacgtgaa gatttcactc 180 cctcgcttca gcggaggcac agcccaagat tggcttaagt ggagtcacaa gtttggacgt 240 ctgtgccagc tcaaaaagtg ggcaccagaa gagaaggacc tgaatttgca gttggtgctg 300 gagaatgagg cactggaggc gtggcaaaca gcttccgagg ataaggatat gaatagtgtg 360 gcacagttta cgaaggcgta cgcgttgtgg ggacggacgt acgtacccaa agcatacaat 420 gagcagttgg aagaagactt gttcatgttc gccaagcggc gtaatgagac agtgtcacag 480 tgtcaccggc gcatgagaga gattgctcgc atgcttcgag acttgccaac gaaccccatg 540 aacttggacg acaagtcaat gatcaggtac ttcaagcgtg cgatgccgag agattggaga 600 catgcgtacg agtgcagtgg tatcacattc agtagtatgc cgcaatccgt gcagtatttc 660 gagcgccttg agcagtcaga gcgacgcgaa ggacaagaga acaaaggcaa gccgaaggcg 720 agtaagccga ataagcagta cggcaactac catggcaaga atagtagcca tacgaagtgg 780 aataataacc acacgagcaa agcgtcgtcg agcaacaacg cagaactaag tggaaagtgg 840 tgcaaactgc ataagacagc gtcacatagt gaccaggagt gttttacgca gaagatgaac 900 gacaagaata gctacaatca gaagtcagcg acaaagaagt cggagaaccg aaagctgacg 960 aaggtggacg acacggagtc ggactacaac tatagtgatg agagcgaagg caaaataatc 1020 accagtgcga tgaatgaagc gtctaaaagc gttggtagac caatgcgact gggaattcgg 1080 ctctcgcaga cgaaagagaa aagagtagct ctactggaca ctggatgtac taccagttat 1140 attaacgcat cactcgtgac tgctaataag cagctgggag tcaagaagac cccttcaacc 1200 atgacattcg agcaagttga cggtaaactc aagtcggatg gtactatggt tgtgaagttc 1260 agattcttgg accttaacta tggctcacga atcactcatc agtttgaggt gattgagaac 1320 accaaggacg agatggtcat tggtcgcgat ttattgagcg cattgggtat catcgtgagc 1380 ttcagagacg gcaaggtgga gtggaacgga aactccgtgg tcgtgaatat gggcaatgct 1440 gggacgtatc aagagatgcc agacaagaag ccgaaaagac acctgcctgt agaattgaaa 1500 ggtggggaga tacttgacga ggtcaaggac attaacgata cttcggtcaa accgatggac 1560 ctgattggcg atgccgacat cgaccaagag acgtacgacc aagtcgtgaa gttgttagct 1620 agctttgaga tgttgtacaa tgggcatctg ggcaagatga agctgccgga ttacgtctta 1680 ccaattgttg agccgttcac accggttcat gcgaggccat actcagtacc gaggagtgag 1740 gaagatgcag ctcgcaagga gatacacaga ttgattacag tcgatgtgct tgagcaaatc 1800 ttcgactcgg agatggcgtc gcctgccttc ttcttaaaga agccggacgg aagactacgg 1860 ttgctgactg actttcgagc gcttaatcgg tttttgaaga gacatccata ctatgtaccg 1920 ctgattcgag aagttttagc aaaactaggt ggagcaaagt acttttcgtc actggacgcc 1980 aatatgggct attacgctag acaattagcg aaaataagcc gaaagtacac cgccttttgt 2040 acaccatggg gaaagttcca atacaagaga ctgccgatgg gaatatctac ggctccggac 2100 gagtaccagg ccagcatgat gaagatcctg ggtgactttg attttgtcat cgtgtatcta 2160 gatgacatac tgatcttttc gaagacagcc aaggaccatg tggagcattt acgggtggta 2220 ctaaaacgtc tgaaagagta caatgtgact cttgatggca aaaagtgtca tatcttttgt 2280 aagtcggtgg actacctggg ttttacattg agtgcggatg gaatccagcc tcaagagaag 2340 aagatcagtg cgataacgcg cttgacagcg ccgagaacaa agcgtgagtt gagaagattc 2400 ttaggactga ttaattacta cagggagatg attccacaca agtccgcatt gttgaagcca 2460 ctgacgagaa tgacgtcgcc aaaagcaaca tttgtgtgga cttcgacaga gaatgaagca 2520 ttcgaaggaa tcaagaaagc gctagccgaa gcagtacttc tatcatttcc tgacttttca 2580 aaaccttttg acatctacgc ggatgcgagt ggtaagcaat taggtggttt gattcagcag 2640 gatggtaagt tgattgcgtg cttttcgaga acacttacgg aggcgcagag gaattacacc 2700 acgatggagc tcgagctact gtcagttgtg gagatcttaa aagagtaccg aacaatactc 2760 ttaggattcc cggtggtggt gcacacagat cacaagaact tgatctatcc tacggagaat 2820 tcgctaagag taaaaaggtg gaaactctta ctgtcagagt accgggttga catgtgaata 2880 tgtacaagga aaatcaaaca ttgctgcaga tgcgttttca cgcatggagt gcacatccgt 2940 gtccaacgaa aaccggtcac agcttagcag agcactgttc agcgaacaag gcgaatgtgt 3000 gttggaagga gattatatca aacagttcca gagtacagac aagatggtac aagtgctgtt 3060 gcaaaagtgt gtgaatggca cgagtgaccc agactaccgg gttgagaaca ccatgggggc 3120 gagactcctt acgtaccaga aacgtgtggt aatcccaaat gcaatgcgcg aagaacttgt 3180 tgattggtat catctgaact tgctgcaccc cggatcaaaa cgacaattcc ataccatgcg 3240 ggctaatttc tactggtcgg gcatggagaa gacaatcgta acgtactgca agaagtgcat 3300 cacgtgcaag aaagccaaac tgcatggagg accacaagca tatggcaaac tccctccaag 3360 agacctgaac agggttgatc cgttcgacgt agtgcatgtc gacacgatgg gtccctatgg 3420 agctgaacgt cagtatgccc ttactgtaat cgatgaagca actcgttggc tggaggtttc 3480 catccaaaca gacagtaaag gaaggacaac agcggaaaac tttgatacga catggctgtg 3540 tcgatatcca cgtccgaaaa cggtaatttt tgacagggga aatgagttca ataccagcga 3600 gttcagagag atgttagcaa gctacggtat caagccgaaa gcgatctcgg ccaagaatcc 3660 acaagcgaac gctatctgtg aacgtgtaca tttggtgctg aataattgca tcagatgcaa 3720 cccagaggcg gattggcgca aagtacttca gtatgctgca ttttcagcac gtgcaagcta 3780 ccacactatt ctgggaactt ctcctgcaaa catgatattt gggcaagatc tgattactcg 3840 caagctttat gaagcaaatt ggaactactt gtgcaagaaa cgctttgatg ctattctaca 3900 agagaatgac cgtgcaaact ctaccagact acagcacttc taccaagtag gcgaccacgt 3960 gatggttcgc attccagcca aagacagaaa gaacaaacac cggaatgtgg ctaacgggcc 4020 attcaccatc gttgcggtgc acgacaatgg cactattacc ctggaccaag gaccaacgca 4080 gcagcgagtg aacattcgtc gagtgtttcc gtgctaatga gcagtcagca tgggggcgag 4140 // ID TY1_PE repbase; DNA; PLN; 1663 BP. XX AC Z50750; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE P.elliotii DNA for repeat region. XX KW Copia; LTR Retrotransposon; Transposable Element; TY1_PE; KW Ty1-copia-like sequence; retroelement. XX OS Pinus elliottii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-1662 RA Kamm A., Doudrick L.R., Heslop-Harrison S.J. and Schmidt T.; RT "The genomic and physical organization of Ty1-copia-like RT sequences as a component of large genomes in Pinus elliottii var. RT elliottii and other gymnosperms."; RL Proc. Natl. Acad. Sci. U.S.A 93(7), 2708-2713 (1996). XX RN [2] RP 1-1663 RA Kamm A.; RT "TY1_PE."; RL Direct Submission to Genbank (11-AUG-1995)Kamm A., John Innes RL Institute, Cell Biology, Colney lane, Norwich, Norfolk, United RL Kingdom, NR4 7UJ. XX DR GenBank; Z50750; Positions 1 1663. XX CC TY1_PE represents the internal domain of a Ty1-Copia CC retroelement. CC Genomic Southern analysis showed that this sequence, carrying CC partial reverse transcriptase and integrase gene sequences, CC is highly amplified within the genome of slash pine and part of a CC dispersed element >4.8 kbp. CC Because no TY1_PE transcription could be detected, it is most CC likely an inactive element--at least in needle tissue. XX SQ Sequence 1663 BP; 547 A; 268 C; 382 G; 466 T; 0 other; aaagaattta aggctctcat ggaaaatcaa acagagaaga agacaaaggt gctaaggaca 60 gataatggtg gagagttttg cagcaaggaa tttgaagaat tctataagaa gtgttgtata 120 gcacagcaaa agactactcc atatacacct caacaaaatg gagttgcaga aagaatgaac 180 aagacgttga tgggaaaggg caagaagcat gctcagtggt gtcgggttag gataggaatt 240 ctgggcagag gcagtgaata ctacatgtta cctagtcaac aggtcacctt catcagcatt 300 ggagggataa gctccacaag aggtatggac tggtaagaaa ccctttctgc aatttgaggg 360 tatgtggatg tgatgtatat gtacatgttc caaaggagaa acgaaccaag ttaagtagta 420 aatctgaaaa gtgcatcttt attgggtata aggatggctt aaagggttat aagctttgga 480 accctctaac aaggaaggtt ttgtacaacc aagatgtggt attcagagag gtaaaagatg 540 gtattaaact tgaaacccac cccaaggaac cttgagaaga tagagtttga gctaaaggaa 600 ggaagaatca agactctaca agtagaagat gaagagccac cacactccag ttgtgagaag 660 atccagtcga gaaataaggc agctagaaag gtatagtcca tctacatttt gttccaaatt 720 ttgctttatc tattactgat gatgatacca gaattgtgaa ggaagcaata gattcagagg 780 atggaaaact ctggaaagag gccatggttg atcaaatggc atatttgcac acaaatgagg 840 cttgggatct ggtggagttg ccaactggaa tgaaaaccat tggtagcaaa tgattgttca 900 caaagaagac aaatgcagaa ggaaaagtgg agtaatacaa agctcggttg gtaccaaaag 960 gttattccca ggtatcggga attgattttg gtgatatttt tctcgccttg ccaaggtaac 1020 ttctattaga ttacttttat ctgttgctgc tagttttgat tttgaggtag aacagatgga 1080 tgtgaagata acatttcttc acagggatct ggaagaggag atctacatga aggaacctga 1140 aggttttgtg gtgaagggta agaaagaact agtatgcaag ttaaagaagt ctctgtatgg 1200 gttaaaatag tcaccaagga tgtggtatca caaatttgat acatttatac ggggacttgg 1260 cttcaccaga aggaaagcag atcactatgt gtattttaaa ttaatttgtg accatgttac 1320 ttatttggtc ttgtatgtgg atgatatctt tctggttgga aatgacaaag aaattatcca 1380 ggatttgaag acccaattgt cctccaaatt ctacatgaaa gatcatgcaa cattgccctt 1440 gtttccctta ctatgcttat gttcttcctc tcggccaccc catttttctg agggttatgg 1500 ggtgttgtca attctcgttt aatccctttc gcatcacaga agttcttaaa ctcatttgag 1560 acatactcac cacaaattat cacttcatag agctttaggc cttatttccc gactctttct 1620 tcaccaaatc tttaaactca caaaaaattg tgaaagtttg atc 1663 // ID Gypsy-49_PIT-LTR repbase; DNA; PLN; 554 BP. XX AC AATU01003813; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-49_PIT_; KW Gypsy-49_PIT-I; Gypsy-49_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-554 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003813; Positions 48570 49123. XX SQ Sequence 554 BP; 124 A; 138 C; 161 G; 131 T; 0 other; tgtcccgtac ccgggaatgt aggtgtcgtg ccaggcgctg gcgggcaggc ttatgtgcca 60 aggaatctcg gcgaaagtca acgggctgcg acggcggacg gctggttccc gttgaccccg 120 caagctccca ctcacttcgc acatgagacc ggtgaagtta tggtgtgatt gtattggaac 180 gctacgatgg agtaaaggaa cggtgtgtga gttccctcct atcgtcttac gtggctgggg 240 acaaggccgt atgcgcaagg tggaccgcgt ctcggacctt cctgtcgccg cacgaggacg 300 gatgtcatgg agaaggactc ttttgatcaa gataaactga agcggtgtcg tgtataggaa 360 agcgagttgg cggtaggccc tcgttcatta gtctcagtct tacatttact acctcttgcc 420 taagctgagt gaaagaaaga aacaagaagc tttttgatat attaagttac cttgtgctac 480 cgttcctgcc acttctcgag accgtactcc ctgaacagcc gcggactacc cgaccctaga 540 ggtagtgtac gaca 554 // ID Copia-11_PSo-I repbase; DNA; PLN; 4200 BP. XX AC AAQY01000174; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-11_PSo_; KW Copia-11_PSo-LTR; Copia-11_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4200 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000174; Positions 72700 76899. XX CC Positions [1371-1901] - Integrase core CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 810..2717 FT /product="Copia-11_PSo-I_1p" FT /translation="MFAVGEERLAGWVIDSGASSHMTPHRDDLFEMDVTVT FT GMQVTIADGKQLPAVGRRTVKLTGMDGKRITMKDVLYIPGLNRRLLSVGKL FT AERGLSVEFQRSSCVIWGNTSAVAMGKKIGKAYVLDCEQESTRFVEYAGAD FT SQWELWHARMGHPSENGMAKTQRATNGLPTVGRSIKTLCGGCMQGKQTVTS FT FPARSTTKTSRVLELVHTDVMGPMRTVSKGGAKYVLTFVDDYSRYVVAYFM FT KKKSEVADKLKEFKAFYENQWGERLKCLRSDNGTEFVNETVTDLCRRNGIM FT HQRTVPYSPQQNGVAGRMNRTIMEKARSMLHYKGVSTEWWAEAVSTAVYLI FT NRSTNTERSDVTPYEVSFKVKPRMDHLRVFGSPGYAHIDNAKRTKLEPKSF FT RCMFLGYAENAKGYRVYDVDASKVKVSRSVKLDEREVSRIYDTHSPQHGTV FT IHVTKDGDVPAVPIEVERQPVEDEPMEAVEEPVPDVEMDEAEPEQEVLRLP FT APERPAATGLELTAYRPPPQAFQDDHLVFHPEPERTRRSREPVFLLGNGDD FT EDGEERKSEGSDGPPSPKRPRIDEDGLIAEAVLAYVARIDDGTDVPATYAQ FT AIASEDADAWRDAMDTELLSHERNVDAGTTWNAYAYDW" XX SQ Sequence 4200 BP; 994 A; 1042 C; 1412 G; 752 T; 0 other; ataggttaac agccgcaagg acgctcgccg caagaacgct cgaccaagaa cgctacgctc 60 aagacatgac gaccaagcgc gctgaagtcc tcttgggcag tgggaactac ttccactggg 120 agtacaacat gcgcatgacg ctggcccgga aggggctgct tgcgcatttg gaggtcgtca 180 aggcggagaa tgagatcacg gaggcgtggc tcgtgaacga cgcgaaggcg ttgggcatca 240 tcgcgcaggg tgtggagatc cagcaccaga cgaagatccg ttccgcgacg cgtgccatgc 300 aggcgtggaa cactctgagg gggtactaca accataccac gctgcacaac cgtgtcgcca 360 tgacccggcg tctggacgag ttcaagatgg actctggaac gtcgatggcc aagcatctgg 420 acgcgttcga cgaactgatc gttgggctgc agacgatgtg agaaccggtc gacgtggcac 480 ggcagctcgt ggtgctgctg agtagcctac cgtcggagta cgagctgatc gcgtccatcc 540 tggagaacgc caaggatgtc acgttgaacg acgtgaagga gaagctgttg aaggagtttg 600 aacggctcga gaagaaggat tccactacgg agaaagcgtc ccgcgccaac gggaacgctg 660 gccggttcaa gggcggtcgt ggaaacggtc gcaaggggaa cggtccgaag aagaacggtg 720 ccttcaaggg caagtgctgt cagttcgacc aggcgggcca cacgaagcgg gactgcccgg 780 gcaagaacgg tagcgctggg aacgacacca tgttcgccgt gggtgaggaa cgcctcgccg 840 ggtgggtgat cgatagcggg gcgtcatccc acatgacccc gcatcgtgat gacctctttg 900 aaatggatgt aacggtcact ggcatgcagg tgactatcgc cgacggaaag cagctgccgg 960 ccgtcgggcg acgaacggtc aagctgacgg ggatggacgg gaaacgcatc acaatgaagg 1020 acgtgttgta cattccggga ctcaacagac ggttgctgtc ggtagggaag cttgcggaac 1080 gcggtctgag cgttgagttc cagcgttcct cgtgtgtcat ctgggggaac actagcgcgg 1140 tcgcgatggg caagaagatt ggcaaggcgt atgtgctcga ctgcgagcag gagtcgacac 1200 ggttcgtgga atacgccggg gctgacagtc agtgggagct ttggcacgct cgcatggggc 1260 acccgagcga gaacggtatg gccaagactc agcgtgctac gaacggtttg ccaaccgtgg 1320 ggcgtagcat caagaccttg tgtggcggat gcatgcaggg gaagcagacc gtgacatcgt 1380 tcccggcacg gtcgacgacg aagacatcgc gtgtgttgga actagtccac acggatgtga 1440 tggggccgat gagaacggtc tccaagggtg gtgcgaagta cgtgctgacg ttcgtggacg 1500 actactcaag gtatgtcgtg gcgtacttca tgaagaagaa gagcgaagtg gccgacaagc 1560 tgaaggagtt caaggcgttc tacgagaacc aatggggaga acgcttgaag tgcctgcgct 1620 cggacaatgg aacggagttc gtgaacgaga cggtcacgga tctctgtcgc cggaacggta 1680 tcatgcatca gcgaacggtg ccctacagcc cgcagcagaa cggagttgcg ggacgcatga 1740 accggacgat catggagaag gcacgcagta tgttacacta caagggcgtg tcgacggaat 1800 ggtgggcgga ggctgtgagc acggcggtgt acctgatcaa ccgttccacg aacacggaac 1860 gctcggatgt gacgccgtac gaggtcagct tcaaggtgaa gccacggatg gatcacctgc 1920 gtgtgttcgg ctcaccgggg tacgctcaca ttgacaatgc gaagaggacg aagctcgagc 1980 ccaagagctt taggtgcatg ttcctcgggt atgcggagaa cgctaagggg taccgtgtat 2040 acgacgtgga tgcgtccaag gtcaaggtgt cacggtcggt caagctggac gagcgcgagg 2100 tgagcagaat ctatgatacg cactcgccgc agcatggaac ggtcatccat gtgaccaagg 2160 acggagatgt gccagccgtt cctatcgagg tggaacggca accggtcgag gacgaaccca 2220 tggaagctgt tgaggaaccc gttccagacg tcgagatgga tgaggctgag ccagagcagg 2280 aggtactgcg gctgccggca ccggaacgcc cagctgccac tggattggag ttgactgcgt 2340 accgacctcc acctcaagcg ttccaggacg accacctggt gttccacccc gagccggaac 2400 ggacaagaag atcccgtgaa ccggtgtttc tcttggggaa cggtgacgat gaagatggcg 2460 aggaacgcaa gtcggaaggg agtgatgggc cgccgtcccc gaagcgaccc aggatcgacg 2520 aggacggtct cattgcggag gctgtattgg cgtacgtggc caggatcgac gatggaacgg 2580 atgtcccggc aacgtatgcg caggccattg ctagcgaaga cgcagatgcc tggcgggatg 2640 caatggacac ggagttgctc tcgcacgaac ggaacgtgga cgctggtacg acgtggaacg 2700 catacgcgta cgattggtag ccggtgggtg tttgccaaga agcgtgacca gaacggtcgc 2760 gtgatccggt acaaggcacg gttggttgcg aagggtttca agcagaagta cggtgtcgac 2820 ttttcgagac gtactccccg gtcgcgaaca tgaattcgat ccgggtcgtg ctggcagcgt 2880 gcgtggcaga cgcatacgtg atggagcagt tggacgcgga cacagcgttc ctgaacagtg 2940 agctgacgga ccgtgtgtac atggaggtgc catttggtat tgagaacact gcgaactacg 3000 tgtgccagct gaacaaggct atctacggct tgaagcaggc ggccagtgcg tggaacaaga 3060 ccatccaccg catgttcttg gggaacggat tcaagagctg cggggcggac cagtgtgtct 3120 atgtcaagcg ttccaggaac ggcttcattt acatgtgtct gtacgtcgac gacatgatca 3180 tcactgcgaa gacgagtggt gaggttcatg aggtgaagaa cgcattgtag aacgcgttca 3240 agatgaagga gctcggcacg gcgaagttca tcttgggtat ggagattgat cacaacaaga 3300 acgctcggac gctcatgatc aagcagacga ggtacattga cgatgtggcg gaacggttcg 3360 gccagcggaa cgctaagcct gtggacaacc cgtgcacgtc gggcctgaag ctgactaaga 3420 cgcagtcgcc cggaacagat gaagagcgta ctgagatgta gtcacggccg taccgttccc 3480 tgatcggatg tctgctttac atcacgacat gcaccagacc ggatatcgcg tacgtggtga 3540 cccagttgtc gcgattcctg gagaaccccg gtccgcagca ttggcgagct gccattcgcg 3600 tgctacgcta ctagaagaca acccggaagt atggtatcgt gtaccaaggt ggcgacgaca 3660 gcatcacggt tgaagcgttc acggacgccg attggggaag caacattgat gacaggcgtt 3720 cagtgtcggg agtcatggtg atgatcggga acgctcccgt agtgttcaag tccaagttcc 3780 agagaacggt tgcgctcagc tctgcggaag ctgagtacat ggcactgagc ctgtgcgtgc 3840 aggaggtact ctggacgcgt gcgatgctga aggacatggg caaggaacaa gtggacgcga 3900 cgcagctttt ggtagacaat caaggagcga tcgcgctggc ccagaacgct gggtaccatg 3960 ctagaacgaa gcatgtggac atttgacacc acttcatccg cgagaacgtg gaacgcggaa 4020 cggtcaaggt ggactacgtc gagacaaagc agcaactggc ggacatgctg acgaaggcgc 4080 tcgggacgaa gacgctcaag cacttgcggg acgctagcgg gatcaaggag aaggtcaccg 4140 taccgtaacg gtgagtggga gtgttgaagt gcaccgctaa gtacggttcc gttccatacc 4200 // ID Copia-1_PR-I repbase; DNA; PLN; 4294 BP. XX AC AAQX01000058; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-1_PR_; KW Copia-1_PR-LTR; Copia-1_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4294 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000058; Positions 3591 7884. XX CC Positions [1696-2205] - Integrase core CC 'CATCC' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS join(28..1197,1201..3609) FT /product="Copia-1_PR-I_1p" FT /translation="MSDHHDEHQPTTGTTGVGPDNQGGDNNLQEELQRQQI FT QALVQQGLLRQRLQAQVQPEQEFTRATGESTTSPQHRTEPRQGTGASSTSQ FT TEPNFGRVIKTFKIEPFDGSVEQGAIVSGVATWFTRFEALLEMQEDLHQVR FT LPERMKNALIFQHLSGAASQWYISNLSDLRLRTFTSLGQELKREFGSKLSK FT AQIGQLVANEKKENSETYREYSLRLRTMAAATSSDGFETKDSNNLALSSFI FT VNAWRKHTDNLRMVMREDSSHPVREFDRAISRLCTIAGHQGVLSFPSRQSA FT PATKLQPSNTSANAKSNLGKRRVAEGEIKREGAFKKRDYSKMRCGTCGELG FT HTTGFHDRYVARQSSGMAYLASDSIDIKSSDRGDVQGDKGGEPSSFDWSRE FT PSDPKVHVFDPGISDGAPIIDSGSTYHVTGTRNKLFDLRKCEPHAVEIADG FT ALVCGNQKGRMLINKFTDKECLIYDKPLMRGSVQRGVYTLDIPPGMAACAL FT RPNSIEDWHQRLGHLNYRSVAELSKSDAVKGLKIVGSLQPSKPCEVCAQAK FT ISRAPAPHQASRPLDAQDEVCHGDLAGPFTASYHGNRYYYALKWKGHTTVY FT FIKTKSEAAVCFQHYMNIVNRRFNRLDGIKVYRSDNGGEFTAGDFRMVCGG FT EGIAMEMSEPDVHHQNGVIERTHRTIADAARALMLQAQLPHYLWEYAIRSA FT VYSRNRVLSRSDPTKTPFETFWGRRPDLKLIKTFGQRCVVLIPPEKRSTAY FT KFRPKGRTGVFIGSDPQRKGYFVYVTGHGNQVIHSRSVIFLEPPKANLPAE FT YSDPKDDPLLVVPDNCEIQSEYEDINNVTDEPRSPRRELRVAGNTMRDSVG FT PGLTPHQVAALNGFEIPTHLRRSERIANRSLGLVLSAAHVTLREVIQEPLN FT LKEAKASTEWHLWEQAIQDEIKALRANDTFDIVEPPVGAHIIGSTIVFRVK FT VGESGEVERLKARICAQGFTQEFLKDYFETYTPVAKLNSIRVFLALATQKG FT MRVRQGDVPTASVKAGLSEVLYVRQPRGFEEVSRSHVWRLKKALYGLKQAG FT REWNVELNSCLIEYGLCSTREDPCVYTHPTNELIVLIYVDDILIGYHDEQV FT LEHLMQALYSKYQIKDLGDVRWFLGIRINMDTARGITTLDQTQFASEILRR FT FGMEDCRPRKTPLDQGTILYKRTQHDDEDQENPY" XX SQ Sequence 4294 BP; 1219 A; 1040 C; 1064 G; 971 T; 0 other; ggttaacagc cgcaagcttt agcagcaatg agtgaccatc atgacgaaca ccaacccaca 60 acaggcacaa ctggagtcgg tccagacaac cagggaggag acaacaacct acaagaggag 120 ttgcagcgac aacagattca ggccctagtg cagcaggggt tactgcgaca gcgacttcag 180 gcccaagtgc agccagaaca ggagttcacg cgagctactg gggagtcaac cacttcaccc 240 caacatcgaa ccgaaccaag gcaaggcact ggggcatcaa gcacttcaca aaccgaacca 300 aattttggtc gtgtcatcaa aacgttcaaa attgaaccgt ttgatggctc cgttgaacaa 360 ggagcgattg tctcaggagt ggccacgtgg ttcacgcgct tcgaagcgct actggagatg 420 caggaagatc tccatcaagt acgcctacca gagcgtatga agaacgccct gatctttcag 480 catctaagtg gcgctgccag ccaatggtac atctcaaacc tatcggatct tcgcttgcgc 540 acatttacca gtcttgggca agagttgaag cgggagttcg gcagcaagtt gtccaaggca 600 cagattggac agttagtggc aaacgagaaa aaggagaact ctgaaacgta tcgtgagtac 660 tcgttacgcc ttcggaccat ggctgcagca acctcatcag atggtttcga gacaaaggac 720 tcaaacaatt tagcgctcag ttctttcatt gtgaacgctt ggcgcaagca cactgacaac 780 ttgcgcatgg tcatgagaga ggactcgagt caccccgtgc gtgaatttga tcgagctatc 840 tcgcgactgt gcacaatcgc tggtcatcaa ggcgttctat ctttcccgtc gcgacagtct 900 gcaccagcca caaaattaca gccatccaac actagcgcta acgcaaaatc gaacctgggg 960 aagagaaggg tggcagaagg agaaatcaaa agggaaggtg ctttcaagaa acgagattac 1020 tcaaagatgc gctgcggcac ctgtggagaa ctcggtcata cgacaggttt tcatgacagg 1080 tatgtggcgc gtcagtcgag tggtatggct taccttgcca gtgacagcat tgacatcaag 1140 tcaagtgatc gtggtgacgt gcaaggtgac aagggcggcg agccaagctc ttttgactga 1200 tggtcgaggg agccatcgga ccccaaggtt cacgtatttg accctgggat ttccgatggt 1260 gccccgatca tagattccgg ctccacctac cacgtgactg gaacacgcaa caagcttttt 1320 gatcttcgaa aatgcgagcc acatgctgtt gaaattgctg atggagcgtt agtgtgtggc 1380 aaccaaaagg ggaggatgct catcaacaaa ttcacggaca aggagtgtct aatttatgac 1440 aaaccactta tgcgaggatc tgttcagcga ggtgtataca ctttggacat tccgccaggc 1500 atggcagcct gtgcattgcg tccgaactca atcgaggact ggcatcaaag gctcggacac 1560 ttgaactacc gctctgtcgc tgaattgtca aagtctgatg ctgtaaaagg gctcaaaatc 1620 gtgggctctc ttcaaccctc aaagccttgt gaagtgtgcg cgcaagcaaa aatttctcgt 1680 gcacccgctc cacaccaagc ctcaagacca ctcgatgctc aagatgaagt ctgccatgga 1740 gatctggcag gccccttcac agcaagctat catggcaaca ggtattatta cgcgctaaag 1800 tggaagggac acacaaccgt gtacttcatc aagaccaaga gtgaggctgc agtctgtttt 1860 cagcactaca tgaacatcgt taatcgacgt ttcaacagat tggacggaat caaagtatac 1920 agatccgata atggtggtga atttacagct ggagacttcc gaatggtttg cgggggtgaa 1980 ggaatagcga tggaaatgtc tgaacctgat gttcatcacc aaaatggcgt catcgagcga 2040 acacatcgaa ccattgctga tgcagctcgt gcactaatgt tacaagctca actcccacat 2100 tacttgtggg aatatgccat tcgaagtgcc gtgtattccc gaaatcgagt tctttctcgc 2160 tccgacccaa ccaagacgcc ctttgaaacg ttttggggga gaagacccga cttaaagttg 2220 atcaaaacgt ttggccagcg ctgcgttgta cttatacctc cggagaagcg atcaacggct 2280 tataagtttc gacctaaagg caggacgggc gtcttcatcg ggagtgaccc tcaaagaaag 2340 ggatactttg tgtacgttac gggacacggt aatcaagtga tacacagtcg aagtgtgatt 2400 tttctggaac caccaaaagc caatttacca gcggagtatt ctgacccaaa agatgacccg 2460 ttgctagttg ttcctgataa ctgcgagatc caatcggaat acgaggacat caataatgta 2520 actgatgaac ctagatcccc aagacgtgaa ttacgagttg ctggcaacac aatgcgtgac 2580 tccgtgggac ctggcttgac cccacaccaa gtggcagctc ttaatggttt tgagatacct 2640 acacatcttc ggcgatcaga acgtattgca aacagatcac tcggtctcgt actcagcgct 2700 gctcatgtca cacttcgtga ggtaattcaa gaacccctga atttaaaaga agcaaaggcc 2760 tccactgagt ggcacctttg ggaacaggcc atccaggacg aaatcaaagc tcttagggca 2820 aacgatactt ttgatatcgt cgaaccgcca gttggagctc acataattgg gtcaacgatc 2880 gtattccgag ttaaggtggg cgaaagtggg gaagtcgagc gattgaaagc acgaatctgc 2940 gctcaaggct tcacccaaga gttcctaaaa gattattttg aaacatacac cccggttgcc 3000 aagctgaact ccatccgtgt atttcttgcg ttggctaccc aaaaagggat gcgcgtacgc 3060 caaggcgatg ttcctacggc gtccgtcaag gcagggttgt ccgaagtact ttatgtccgg 3120 cagccccgcg ggtttgagga agtaagtcga tcccatgtgt ggcgactcaa aaaggcatta 3180 tacggcctta aacaagccgg ccgggagtgg aatgtggagc tcaacagttg tctcatcgag 3240 tatggattgt gttcaacaag ggaggatccg tgcgtgtaca cccatccaac taacgaacta 3300 attgttctta tctacgtcga tgatattcta ataggttatc atgatgagca ggtactagaa 3360 catttgatgc aagctcttta ttccaagtac cagatcaaag atcttggaga cgtacggtgg 3420 tttctcggca tacgcataaa catggataca gctcgtggaa tcaccactct cgaccaaacc 3480 caattcgcat cagaaatact gcgacgtttc ggtatggaag attgtcgacc ccgaaagacc 3540 ccgttagatc aaggcacgat tttatacaaa cgaactcaac atgatgatga agatcaagaa 3600 aacccttatt gacaggctgt cggagccctt ctctatctcg cgcgcgttac caggcccgac 3660 attgcatttg cggtgaacca ggttgctgcg catgcctcaa gtccagctca gtctcactgg 3720 attgccgtga aaaatattct caggtacatt gaaggaacca agaacatggg cttgatctac 3780 aagagaaata agtcaactgt ccccgccaga gtgtacacgg acgctgactg ggccaataac 3840 gaggaagatc ggcgatcaat ctctggagtt ctcgttcaag ttttcggtaa ctctgtgtct 3900 tggcaaacaa aacgacaacg acttgtttcc aagtcctcta caattgctga atacattgca 3960 gcggatgatg aagtagaaga agcattatgg acacggatgc tgcttcaaag actgatgaaa 4020 actcaagctc tcgacgcaat tccagcgatg attgacaaca agtcaaccat tcaaagactg 4080 ttaaacggaa aaaattccga ggcacaaaag acagttgatt gtagcatctt ctcgatacgg 4140 gatgctatcc aatctgggca tctacagctc aagtactgtc caactgcaat tatgttagct 4200 gatggactga ccaaggctct tggatctaca caatttagtg aacgccgtga agcaattggc 4260 atcgaagaat tgacatccag cgctggtggg gaag 4294 // ID Gypsy-32_PIT-I repbase; DNA; PLN; 4187 BP. XX AC AATU01001269; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-32_PIT_; KW Gypsy-32_PIT-LTR; Gypsy-32_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4187 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001269; Positions 57150 52964. XX CC 'CCCTG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 291..4187 FT /product="Gypsy-32_PIT-I_1p" FT /translation="MFNDVVAEKQLDHVDVAIYSLRRLTMVHCPPGTRTLI FT IDEMTDLRKTASMSVREYSRAFRKLNRYLTFIDENEAIPEADCVRMYKSGM FT PIEWQIEVSRLSRSWDFAGLEQQFELIERVENEAEALRNRRRPPRDNKNSN FT AAQSRENGGGHQQQQRRNARPGRGGQKSGQEKAQQGQQGGKYCSFCKRNNH FT TQEQCFRDPSSPAYRPRGGQQQQPRHGRDQFAAMQEKINQMAARMETMQKQ FT HEEELNALLFYQGDEFNAMTYDKEEDGVEAGRTSSTMAPLLAKTRAEKPNR FT SDEPVMVTEVRIGEVTFSALIDTGCSRSAIDQSVVDRVREQLVLQQEEATF FT KQADGSTGKTTHVAKAAINMPIFSTSRVCTHEFRVASQLLYPVMLGKNFFA FT TQGIDLLFSTKELEWDGLCVPMPKLRARGWKPGLRLHVSDESSRVEISVAE FT NSGPVDFNLMIDGTNLSENELLLMLALMKEFDDVASGRLGEIKGDPYELPL FT YPDAKPFACRPFPVPQIRLAATKQAVQRLVRLGVMTADNSSPWASPAFTIL FT KKDGTIRLLCDFRRLNALLQRRFFPLPVIPELLRQFQQCKFISVFDIPMGY FT YARVLSKRSRAATAIVFPFGKFVFNRLPMGVATAPDEFQAVMNGTLGDLEF FT VWVYLDDFIVMSTSFEEHLRHLRIVFQRLRDNGLTIHPRKSKLCTDSVSYL FT GYHISTSGMKPLHDKVSAIQAIEAPRTRRQLRRFIGMVNYYRDMWPRRAHI FT LAPLTALMSPQHNFRWDQTHQQAFEQMKSVMAHTVELSFPAHGEPFHIHTD FT ASGYQLGAVIAQHGRPLAFWSKKCTDTQRKYPANRLELLSILMVLREYRTM FT LLGQELHVHTDHLNLTYGTFNNIQMMRWRLEIEEFGPRLHYIKGENNVVAD FT ALSRLPGAELGKDTEDAATLAATSEDSGVFSLNLQQLARAQESAAISSGNV FT KEINGVKLKVDARNNCIIVPDHLQEPIIRAYHEWLLHPGGAAMYETIKTSL FT YWKGMESKILQFVRNCLPCTKSKHPTMKYGKLPAKTVTVRPWFEVAIDSIG FT PYGKRKFRAMTMIDTSTRLVEIQPVDDASSDDAAFVFDRFWLCRYPRPVRV FT IYDQGTEFKKEFFELLESYGIHALPTTTRNPQSNGVIERLHRGIGDKLRTQ FT TIDTKEEWAAFLHDATFALRATYNSMLKSSPAQASFGRDMLFDVKHTTNWD FT EQYQRKVAQVAKSNKRENDKRREWIYAPGDKVLLRNDAGPQAKMSPLFSGP FT YEAVAVRTNGTLVLDKGKYMETVHIRRIVPFKSQRGED" XX SQ Sequence 4187 BP; 1064 A; 1095 C; 1165 G; 863 T; 0 other; ttttgctata gcaaaaacac aacaaagttt tgctaccgac aagtcaacag cgcccaccca 60 tgagccacac caagatggag gagacagtga tcttcgagaa ggtgaagagc aacgggtcga 120 cgattaagaa gcgcgtgccg gtcttccgag atggaacctg gaaggactgg ctggagtggc 180 tgttacggct gtcggaatat tacgtcttca tggggtaata gaacacagag gaggaccagt 240 tcgcgttcgt cgaggacttg taggtccttc tcttcgatga cgaccttctg atgttcaacg 300 atgtggttgc cgagaagcaa ctcgaccacg tcgatgtagc catctactcc ttacgacgat 360 tgacaatggt tcactgtcct cccggaactc ggactttgat cattgacgag atgacggacc 420 tgcgcaagac ggcgtccatg tccgttagag aatacagccg agccttcaga aagctgaatc 480 gctaccttac cttcatcgac gagaatgaag ccatccctga ggccgactgt gtccgcatgt 540 acaaaagcgg aatgccaatc gagtggcaga ttgaagtgtc acgactatca cgctcctggg 600 acttcgctgg actggagcag cagttcgagc tcattgagcg ggtagaaaat gaagcggaag 660 ccctccgcaa cagacgccgg cccccacgcg acaacaagaa cagtaacgca gctcaatctc 720 gtgagaatgg cggaggccac caacagcagc aacgaaggaa tgcacgtccg ggacgaggcg 780 gacagaaaag tggccaggaa aaagcacagc aaggacagca aggaggcaag tattgctcct 840 tctgcaagcg caataaccac acccaggagc agtgtttccg ggatccgtcg tctccagcgt 900 atcgaccacg gggtggccag cagcaacaac ctcgccacgg gcgtgatcaa tttgctgcca 960 tgcaggaaaa gatcaaccag atggctgcca ggatggagac catgcagaaa cagcatgagg 1020 aggagctgaa cgctcttctg ttttaccaag gcgatgaatt caacgcaatg acttacgaca 1080 aagaggaaga cggagtggaa gcaggcagga cgagctcaac gatggcgcct ctgctggcca 1140 aaacaagagc agaaaaaccc aatcgcagcg atgaaccagt gatggtgacg gaagtccgca 1200 ttggtgaagt tacgttctct gctttgatcg acacgggttg ctcgcggtct gcgattgacc 1260 agagcgtggt ggatcgagtt cgtgaacagc ttgtgttgca acaggaagag gcaaccttca 1320 agcaagctga cggctcgact ggcaagacaa ctcacgtggc aaaggcagcc ataaacatgc 1380 ccattttctc gacgtcaaga gtttgcactc atgaatttcg agtcgcctca cagctcctgt 1440 acccggtcat gctggggaag aacttcttcg cgactcaagg aattgacctg ttgttctcga 1500 caaaggagct cgagtgggat ggtctttgtg tgcctatgcc gaagttgcga gcgcgcggat 1560 ggaagcccgg cttaagactg catgtgagcg atgaatctag ccgggttgag atctctgtgg 1620 cggaaaacag cggaccggtg gattttaact tgatgattga cggtactaac ctctcagaga 1680 acgagcttct actcatgctg gcgctgatga aggagtttga cgatgttgcg tcagggaggc 1740 ttggagaaat caaaggtgat ccgtacgagc taccacttta tccagatgca aagccctttg 1800 cgtgccgacc ctttccagta ccacagattc ggttggcagc aactaagcaa gcggtgcagc 1860 ggcttgtgcg ccttggagta atgacagccg acaacagctc cccatgggca tcgccagcgt 1920 ttacgatttt gaagaaagac ggcaccatcc gactactttg cgactttcga cggctgaatg 1980 cgctgctgca gcgcaggttt ttcccactgc cggtcattcc agagctgctt cgccagttcc 2040 agcagtgcaa gtttatatcg gtttttgata taccgatggg atactatgct cgcgttctct 2100 cgaagcgcag tcgagctgcc accgctatcg tgtttccgtt cggcaagttt gtgttcaacc 2160 ggctgccgat gggcgtcgct actgcccctg atgaattcca agcggttatg aacgggacgc 2220 tcggagacct ggagttcgtg tgggtgtatc tggacgattt cattgtgatg tcgacgtcat 2280 ttgaggagca cctaaggcat cttcgcatcg tctttcagcg tcttcgtgat aacggactca 2340 ctattcaccc tcgtaagtct aagttgtgca cggatagcgt gtcgtacctg ggctaccaca 2400 ttagcacaag cgggatgaag ccacttcatg acaaggtgtc ggccatacag gcgatagaag 2460 ccccgcgcac acggcgtcag ctacgtcgat tcatcggtat ggtgaattac tatcgggaca 2520 tgtggccaag acgtgctcac atcctggctc cgctcacggc gttgatgtcg ccgcagcaca 2580 actttcgttg ggatcagact caccaacaag cattcgagca gatgaagtcc gtgatggcgc 2640 acactgtgga gctttcattt ccggcgcacg gcgaaccatt ccacatccac acggatgcgt 2700 ccgggtacca gctcggtgcc gttatcgccc agcatggtcg tccgctcgcc ttctggagta 2760 agaagtgcac cgatacgcag cgcaaatacc ccgccaaccg tctcgagctg ctgagtattc 2820 tcatggtact acgtgagtac cgcaccatgc tactcggcca ggagctgcac gtccataccg 2880 atcacctgaa cctcacatac gggacgttca acaacatcca gatgatgcgc tggcggctcg 2940 agattgaaga gttcggaccc cggctgcact atatcaaggg agagaacaat gtcgtggcgg 3000 acgcgttatc gcgcctaccg ggtgccgaac tggggaagga cacggaagat gcagctacac 3060 ttgcagctac gagtgaagac tcgggagtgt tctcgttaaa cctccaacaa ctcgcacgag 3120 cacaagagag tgctgcgatt tctagcggaa acgtgaaaga gattaatggc gtcaagctca 3180 aggtggacgc gaggaacaat tgcatcatag taccggatca cctacaagag cccattatca 3240 gagcctatca cgagtggctt ctgcatccag gcggtgcagc aatgtacgaa acaatcaaga 3300 catcgctgta ttggaagggt atggagtcta agattctgca gttcgttcgg aactgcctgc 3360 cctgcactaa gagcaagcac ccaaccatga agtacggcaa attgccggca aagacggtaa 3420 cagtgagacc gtggtttgag gttgcaatcg actctatagg tccctacgga aagagaaagt 3480 ttcgagcgat gaccatgatc gatacaagca cgcggctagt ggagatccag ccagtggatg 3540 atgcgtcaag tgacgacgcg gctttcgtct ttgatcggtt ttggttgtgc cgatacccac 3600 ggcctgtgcg ggtcatctac gaccaaggca ccgagttcaa gaaagagttc ttcgagctac 3660 tagagagcta tggcatccat gcgctaccca ctacgactcg aaaccctcag tcgaacggcg 3720 tgattgaacg gctgcaccgt ggcattggag acaagcttcg aacgcaaacg atcgacacca 3780 aggaggagtg ggcggcattc ttacacgacg ccacctttgc ccttcgcgca acgtacaact 3840 caatgctcaa gtcgtctccg gcccaggcca gtttcgggcg agacatgctt ttcgacgtga 3900 agcatacgac gaactgggat gaacagtacc agcgcaaggt tgctcaagtc gccaagagca 3960 acaagcgcga aaacgacaag cgacgcgagt ggatctacgc cccaggagac aaggtgctac 4020 tgcgaaacga tgcgggacct caagccaaga tgtcaccgct cttcagtggc ccttacgaag 4080 ctgtagcagt gcgaacgaat ggtacgttgg tccttgacaa gggcaagtac atggagaccg 4140 ttcacatacg acgcattgtg cccttcaagt cccaacgtgg ggaagac 4187 // ID Helitron-N3_PPa repbase; DNA; PLN; 2531 BP. XX AC . XX DT 30-DEC-2009 (Rel. 15.07, Created) DT 30-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous Helitron transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW Helitron-N3_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-2531 RA Bao W. and Jurka J.; RT "Non-autonomous Helitron transposons from moss."; RL Repbase Reports 10(7), 1037-1037 (2010). XX DR [1] (Consensus) XX SQ Sequence 2531 BP; 809 A; 337 C; 434 G; 951 T; 0 other; agattgctta aggagacaag tggtggctct cattcaccgc atggattggt ctttgttttc 60 atcaaaaagg ttcatatttt gtagagttca caacacattt tatagttcat cactgcattt 120 tgcagttgat tggggagttc cacagggttc aagtagtggt tctcgatggt tgcatggatg 180 gatctttgtt ttcatcaaaa aagtttgcct tctttgaagt tcatagggca ttccatagga 240 cattttacaa atgatcaggg cattctatag ggcattttac aattgatcaa ggcatttcac 300 aagggatcat aaattgcaag aaagggctca aagctttgag agacgctctg actgacgagc 360 aacaatagct tttgattcac atggcctcag agtctctcca aatattaccc aaacaaaaag 420 tatttaacaa agaatggatc tatcaagcac ttgattgttt tagactcaag gctcacaata 480 caagtagcac tgtgcaatgc aaactcaaga taaatagcca agacaaatag tggttctcat 540 ttgctgcatg gatccatcat tgttgaagtt taattaaaca tgaaatattg gagtttaatt 600 gaatgtggat gggtttagca atgtattgtt tgttgcatgc atgcaatgca attgaaggtg 660 aagtttggtc cttgatggag aagaaggcat aattgcaatt tttttgtgct ttcttgaagt 720 tgcactctgc aatcgcaata ggcatctgcc aaaagttttt attttttata ccctaggtat 780 ttgtgcattg tgtttgagct tcttcaaaga atctgtcaaa gaatttgtga gtgagagtat 840 agaataagga taagtttata atctaacttg agaaaaaaac ttgacaaaac ttcaaagatt 900 tcaaaaacca tgctctccat tctttttaaa tcatgttacc aagctttgca ttgcaaagtg 960 agtgtatttt tagatatttc aaaagattca aaaatttata tgtatttgca ttgcattgca 1020 tttcaaaatt ttcattgtgc tttgcattgc aaagtattat acaaaaaatt atacaaaaaa 1080 attttgtgta atttttgaaa tacacaaaaa tttcattgtg ctttgcattg tagagtgagt 1140 gtatttctag aaatttcaga gtgagtgtat taaggtgaaa tggtttgagt gttgtgtgct 1200 ttgtcatttt ggtagttaat tgttcagatt tagaaacaat atatgaacaa tcaagtgaaa 1260 gctgattgtt gagagtcact atggcattat atattattgt ggcattgcag agagtttgga 1320 aattatttga ttcttaattt aagatctttt atttgaggtg ttcaaagtag cttcaagttg 1380 tgtatctttt tgtattaatt gacttacacg agaagtgcaa ggttagaggc atttcaaggc 1440 attatgtgta gaagtgataa caatgagttt taccattgaa aacttacaat ttgtcaataa 1500 ttggagaaga aaggacttga caattgaaga gcagagcttg attttttttt tatttttttt 1560 tttttttttt tttcacttca acttttgtgt catccttgta gaattgattg caagctaaag 1620 gaattcattg tcttgctgtt gtaagcaaca ggctattatt caagagtggg gcaatcaact 1680 tcgttggaag tgggccaatg caagagacat catgcaactc attcaatttt gaaggcactt 1740 ttattatcct tggtaataac atagtgaggt gcaatggaat aaggaattat ctgaaattgc 1800 accaaggaat tgtagtgaag caagtgttat tttttggctt gaattcaatc aagtttactt 1860 gagtagactg cgtttacacc atctagatat tactttcaca aaggcaaact ggtttccaaa 1920 ctcccacatg tttccaaact attgtgaatt attcttcgag aaccatgaaa tcttaattgc 1980 ttattattga ggtagattct atggataaaa agactctcaa tatatatata tatatatata 2040 tatatattca atctttatag ttttatagtt tatattttta tagtattata attttatcaa 2100 atatctatat aattttatag ttttatattt tatattttaa ttttataact ttatatttat 2160 agattgaatt tatataatga agtgatttat taaagacatt ataataaatt acttcatatc 2220 ttttaaattt gactttaata catctttgaa tgtcttaaca cacttttatg attttttaat 2280 ataatttaat gtttttttta ttattttcac aagtagttcc ttgaacaaaa ttaactactt 2340 tttttgcata ttatccatga caatggcaca ggtttagcta tcctactttg tagctgaaag 2400 ctccattgtg aattttattt atttcttttc taaaaaaaat taaaaaatat tcattggctc 2460 acaaacatat atttcaaaaa aatacttcat ttgagtcata ctttttgtga caacaacata 2520 ggttcatcta g 2531 // ID Gypsy-8_PIT-LTR repbase; DNA; PLN; 493 BP. XX AC AATU01003045; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PIT_; KW Gypsy-8_PIT-I; Gypsy-8_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-493 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003045; Positions 79472 78980. XX SQ Sequence 493 BP; 127 A; 118 C; 107 G; 141 T; 0 other; tgtgacgtgg tggtcaccag ccaatggcat ggcagtgacc agccacgtca attatttgag 60 ttcagctggt cagattattc tgatcagcgt aaacttaaga ttgcgtgtct ttacatcata 120 ctacaatcct attggtccaa aatctcatgg atttgcaaca atcaagcttc cagccggaaa 180 ttgtgattat gggacgctgt gcgaaatttc cgaccaagaa aagaattaga attcataggc 240 tttcattggt agttacagag aaaatcagga tttgagaaag ataggtttta ggatggacct 300 ggatacgtgc gtgaatatcc ggttgtcaag aactactggt tgtgcggcag ctactagctt 360 gcagccgcca actctaactg attaatcact tctcaatttg ctttcgagca gcaactcctc 420 tcctcccctt caactgtcta cggcgccgta ctcgccgtct acgctcctac gcttcctcgc 480 tactttcgtg aca 493 // ID PIF_Harbinger-1_Smoe repbase; DNA; PLN; 8183 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-1_Smoe. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 8183 BP; 1973 A; 2194 C; 2089 G; 1927 T; 0 other; ccgagtacaa ggagctcctc caaaacccgc aaggcttcct gctcgcgacg ctcccaaacc 60 agacccaggc caccacggtc atggcggtgc tggagctcct ctccacgcac caccctgacg 120 aggagtatct cggccagcgc gtccaaaagt actggaccgg cgacgagaag gtcctcgagg 180 cgtcgaacga gttcgaggag agggtagccg aggtccagga gatcatcgaa aagaggaaca 240 acgaccccaa gctgatgcac aggcatggag ctggagttcc agcgtacgag ctcctgttac 300 cgacctctgg gcccggaatc actgctcgcg ggattccgaa cagcgtctct atctaagctc 360 gtaagctatg gctttagaaa ctctagagaa cttgtaaaag tacctggttt gcgtcaaatg 420 tataaaatgg tttgattgcg aatttttctc tttggtatgg tacagtctcc cgagcttgaa 480 gacaatgaat gaagagaatt ttagttttgc ttacatcctg cgtaggccga gaccaagttt 540 tcgaacgggt tcgctagtgg ataggtcttc ttctttagat tgcagctaaa cagcgcctgg 600 cccatcgaca gcactagagg attcacagct cggaggggaa tctggtagct cgcggggtaa 660 aattggtcct cctcctcctg gacaaagaga tagacgtcac ttatctagaa agaaaacaat 720 ggaaaaatac taccacttga tcaaggtaaa cctcttctaa ctgcgctagt tcttccagct 780 ctaagtcatt gaggtcctgg aaagaacgag acaagtcaag tgaggaaatg tagtaggcaa 840 gtacctgttt gcctttcatt ttcgcgattt gacgcttcac ggctcgcgca gatcccaaac 900 ctacggctct cctctctctt gcggtcctgc gccggacatt catgcagaca gcacactcac 960 acgttgattt atgattacta gtcctgtgca aagcgtgaat tactggttca tctctagtga 1020 aaagaaagag caatttaccc ggcagcaggt ttctgtggaa tgtgtgccga tgttgtctta 1080 gcaacaaaaa tttcggatgg tttttctgcc gcattgtccg ctgtaaatac gcattgagtt 1140 agacgttcct actatttcgc aaatgtttgc ttacctgtct ttgacttctt tggatcccga 1200 agaacaccgt tggctgtcca atacttgctg catgccttct ggactttctt catcaagtcc 1260 aagataggat ctcctttgtg gttatacttt cggcagttcg tccagatttg ttgaatgtct 1320 cggtaaacat ccgacgcgtt tctatacttc tgacgtttct ctagattttc gcatatggta 1380 ccgaagtcca tcggggtgtc aattatgtca aggtaatcct ataaaaagaa tttgaaatag 1440 taacatcaag atgaaaacga gatgatagta agcttaactt accgggacac cttggcctac 1500 ggggtcaaca ggtctgttaa aaggatgtgc cgagtccatt ttcatgagtt tcctgatgat 1560 ctgctagcca gccttgttat gcatcatgtc ccaagaaaag taaatgaagc acataccttt 1620 agagaagttt ctacctcgtc gtcacgtagc tcgcttggcg gagattgtgg agtaggagtt 1680 gagtcaattg gaggagattg taccggcgaa ctcaaagacg gcgtactgct gggggtcttt 1740 accacagctg ccttttgagt cggagcctgc ggaggttcta tcgcagaacc tgcaggcttt 1800 ctcttcgcat ccgagaacgt aagatgtact ttcagtggcc tttggggaat ctccggagtt 1860 ttcttcggct cgtcaacttt tttctgcacg ctgcttgcct ccttctcctt cgtgacttcc 1920 ttgctttctt tcttctccac cttcaacctt ccgggcttag cttccgcctt tgcctcggca 1980 ttttctcgaa ctttaaaagt cttgatcctg actcgagagc tctcacgcct cttcccgacc 2040 tgtgaatccg tatccttccc actcgtagca tcggcatgct cggcagactc cactttggtg 2100 tcctctgtgc tcccagaaac ctcactagct ccatcgtacc gtgacagcgt cctcagcttc 2160 accaccctac ctccgctccg gggagcccgc ttcctcttgt tctcgccgct caccactggc 2220 accgatctct cctcgtcgtc ctcttccacg tcggtctcat cgttggccgc agtccgccac 2280 gatccctccc gcttcttctg ctgcttgccc cggctccgcg tgcgcacgct gtccatgaga 2340 aaacgaagac gagcctgcgc accgcgaaat atcacgaatc aggatagctc ccgcgccgga 2400 aacgctcgcg cctgcaaaat ccagctcgct gcaagcaatg ccgcgatccg atagcggccg 2460 tcggcgccac agcgccatgg ccgccctcta aaaccctagc tacgtagcgc tggctctctc 2520 ccagccctag cgctggggga atttaaatca taaaaggggg ggtagtggca actcaccgat 2580 agatcgccca agttcgttag cgtggggcgt tctgctgggt atccgaaatt agggccaaaa 2640 aagaagacgg caaattccga gacggaatgt ccagtaaact caatcgactc gagttcgact 2700 cgctttaact ttaagctttt aaccgtacaa gagagctgta cgtaaagcag attcttaacg 2760 accgtacaaa tagctgtaca tatagcataa tcttgacgac cgtacaaata tcgtattcgt 2820 atttcaaaag gttgggatat tgatttatgg tacaagcact tggtctttgt ctttgcttta 2880 gattgttggt agcatagcaa atcgtgatgg cgagctgtgg cctttggcat tgtactggag 2940 ggattcctgg ggtttgtcct ttggcctttc aaggctgtaa agcgagaaac gagggaaaaa 3000 agaatggtgg agagcatcta gcttgtggca gcgggggcac actcctttag aatgcttttg 3060 gaggaatgca gtcgcgtata cgaggccgcc agtcgggcct gaaagaagca aaacgacgag 3120 gagaaaaaaa taagtatcaa tggtgaatct gttgcgtgcg agagaatagt accgattgga 3180 aaagcacgag cgtccaccag cagctgttga gtcccaatcc aagcttgtgg aagatctggt 3240 ttttaagtgg ccgcgagatt gtggggctta gaaaatagta cggattgaaa gagcatgctt 3300 accttcatga gcaggcttcc acagacaaag caagatgtca tgctcaggcc caggaatcct 3360 aaatctcgtc cggcctacat acaagccgac gcaattcgtc agttaccagg aacgtggtaa 3420 acgagccaag gtttgtttgt ttgactatct taccaaaagt gtcccttcca gcgacagtgc 3480 aggtggtgtt aaaacaatgc tccagaaaaa tgggaacgct accgaatgca tctgcgaaca 3540 gacgagacag ggtggtgtca gcacggacac gtgatcaacg ctgcattgtg tcatctcaac 3600 ctgtgctacg attgctgaat cgttcgtaaa aagctgcggc acaagaaaag gaaccgcgac 3660 gccaatgctc gctaaagaga atcctaaaat cgcacccgta tagagaagtg ttttgagcaa 3720 cgttcgtgcc tgtaaaaaga tgatcgagcc aggtttactt ttatcgtttt gcttggctca 3780 cctgctcgaa gttgcgggtt tttccgctaa taagctctgg cataaaggac tgagctgttt 3840 gggccaaagg ctctccacat actgaaaaca atgtgaagat cccaatcatc acctggcaaa 3900 tcaagacatt tttaagttaa agaactggtt tttactgttg aacctgatgg gctcctaaag 3960 tgagtggccc aagcgaagtc gcgaaatatg taattgttgt gtaaaaacat atctgtaaac 4020 aagataaatt gagcttccaa ggatagaaga cgatatacga tgatgtacct ttgacaacat 4080 ggtcataaga actggtgcag ctatttcgat catctgcagg atgtctttga agctgggtac 4140 aacgatcgcc agaggattgt atcctttcgc ttttaaagaa gttaacatca aaattcccgc 4200 aacatactgc atgcttgaag cttgagttaa cgatcaagta gactcatatt catacctgtg 4260 atagtgccgt tgcccaggca gcaccagcaa ttccatatcc tagaaatgta caaagtagaa 4320 tatctccaaa agcatttaca agactcgcga cgagcaaaac tttcaaggga ctccatgaat 4380 cctgcattcc caagctgtgg tataaaagaa agtgagataa cagtaacagc atacaaagga 4440 agccaaaaga cagaccttgc actttgagca accatggtga caagaaccgc tggccatgcc 4500 cacgctctaa tctgaaattg tcccaaagag acatatatca aaaccactac accacgaaaa 4560 acttaaattt attcagctta cattcacgta cgttgccgcg gctgggacga tcccagagtt 4620 tttggctcca acaaaagcta aaaggaaaaa aatcttgaat caatcacagc caatacattg 4680 ccagacctca ccttggagca tggaactaga agagaatcta atagccgcga gcatagccat 4740 gccacagccg aaagctacaa acaagagcct agccaaatgg tttgctgctt ctttctcgtc 4800 ctacacgaaa ttccaaacca cagatcagaa cgcgtagtaa caccaatcgc tcttaccttg 4860 tttgcaagcg aggttgcaat caagttggat gtagcaacgg acaagaacat gaaaacatac 4920 gagagtccat cgcacatcac agttccaggt cctggaagga agtaaaccac aaagaaactt 4980 tagttctaga ggaatccaaa atcaatcttc ttaccaaggg cggccaattg caaagagcta 5040 gtggttccca caacactcgt atcgatgaga ctcataatcg gtccggacaa ccagatgccg 5100 agagccgggc cggcgaaagc gaatatctga cgtacttgct caaacatgtt gggctcctcg 5160 ctaatgctaa catccgccgc atcgccatcg accagaatct cctttccttc cacttcttca 5220 acaatggtgg ctgccagtga cgtcttgctg atgtcgacat tggtgagcac tatctctttt 5280 ggcgcctcaa gcacgccctc tccagagacg tagaacttca cggcttcttt cggcgtccag 5340 ggcacggatt gctgctcgcg gtccgccggg ggcgcctctg gctgctcgac ggtgcaatgc 5400 cggacgattc tcgagcagag atggcgctgg agaggagaaa gaactcgctg ttgctgctgc 5460 gactggcgga gcttggcaag atcgaagccg cattgcacgc cggacgagtg gcgccgcgag 5520 cgattcacgc agactgggaa tctttgcaaa tggatcgccc ctgagacagc acaatccatg 5580 gaactcggat tgccctgccg caaagaacct acaactcgat cgatcgagca gagaacctac 5640 gaaatatcga tcgctcgata gagatttccc tcgcagcgcc tcgagcttcc agcgcctagt 5700 ggcggctcgg cctcgtcgag cgccccttct cgcacgagat tctcgagagt gaaacaaaga 5760 agaaaaagaa tgtgggtcat ggaatttgat ctgaccatag acctagatat ttatactact 5820 aagtgggcgg cccatgggcc cgttacgcta gggttctttc gctgagggga tgagccgctg 5880 agccgctagc cgccagatca cagtaagtct cgttgtttct gtgatcattg tggttacagt 5940 gaggaatttg atcttaaact cttccccttc ttggattgct tggaaatttc ttggatctgg 6000 attggagctc ctcgcatatc cagggattct tccctgtctt gatcacgttt cttggcctgg 6060 atgcgctttc actgtcgaca tttcgatctc atggtctcgg atttcctgga ttccaggggc 6120 atcgtctcgg atttcttggt cgcccgacgc tgcgatggaa gatcagaggt accgcaagca 6180 agtcgccatg tccctcatca tgggagcgct catctactgc cgcaacgcga gcaagcggcg 6240 attcgaccgg cgcaagtcgg cgatcgtgag catcgtgtcg gagatccagc aggggatcct 6300 cgacggcgcg ccggccaaat ccacctgggt gagagacatg ctcatgcacc acaccgacac 6360 ctgggacacg acgatcttcc cgcagtacga cgatggccag ttctggaagg atttccgctg 6420 caccaaggcg accttcgagt ggctgtgctt cacgatcttc cagccgtgtg gattcgaggg 6480 gaatagaaca ggtcccaact ggcgcgtcat ctccctccgc cgccgcgtcg cgatgctcct 6540 ctggcgattg ctccacggcg gccgcgagca cgccatcgcc aagatcttct tctgcgacca 6600 gtccaccgtg aacaagatcg tccacaaggg gctggggatc atcgccaagc actggaccga 6660 cgcttacatc gggtggccaa ccggggaccg agctagggac attgccgcaa agtttgagct 6720 cgagactggc ttccccagcg tgatcggagc ggtggatgga agccacattc ccatcaccac 6780 cccgagcatc gatcgctcga attactacaa cgacaagtcc ttccactcga tgatcctcat 6840 gggtgcagtc gaccaagacg ggttttttct cgagatcgac gctgggcttt gcgggagctt 6900 gcacgattcg caagctctgg ccagctccag gatcgcgagg agagccggcg aggggctcat 6960 cgaccagcag gggtaccacc tggtcgggga ctcggctttc aatcctccaa ggccgtggtt 7020 gatgtgtcca taccggggtg gtggccagct tacgccccag caggagtctt tcaaccaggc 7080 gctcgcctct gcgagagctt ccatcgagcg ggccttctgc caacttaagt ctaggttccg 7140 ggtgctgctc aagaagatgg agggcgactt ggacaccacc gtccagatga tcggggtgtg 7200 ctgcacgctc cacaacatgc tgctctcgca gaacgagagc gccgacccgg cctggattga 7260 agagtcccgc caagctctcg agtcgacccg aggtgtttct tcgtccggga gagagcccac 7320 gctggagcaa gccgcggcgg aggtgatgat cgccacggcg ggtctgcaag agctggagtc 7380 agccaccgcg acgtccgatg ccgcgcgtct ggcgagagtc atggagccgc tgccactccc 7440 ggcaggattc aaccacaccg cggacatgca gcgagctcgc gagatccgcg acggcctcgc 7500 cgagatgtta tactccagga agcggcaaaa gacttgattg aggttggggg agaagagttt 7560 actctgttat acaacgcctt cgggttcttg gcctgggatc acggtcatgg cttggccgct 7620 actgccgtgg atctccggcc tgagcttctc cagctccttg aggatgaact tgcgaggccc 7680 gaccgggatc ttcatctcca ttagatcatc cttgtcgagc agcagcaagt tggtccagtc 7740 tacgtgcgac gccgcgaagt agctcgcgta ctggtccttg ccgatgctct tgagccagct 7800 gaacacctgg ttgtcgatct caaactcggt cggctgcgcg ctcgcctccg ccagcaacac 7860 gttcgtgagg ttgacgacgg cgtccagcac ctccttgaat ccctgtgccg aggcggtgtc 7920 atcgaaagtc ccaatcttct ccaccacctt gtcgacgatg gagtctacga gcagctggtt 7980 gtttgcggac ttcttcatcc tcttcccggc gacttcacga gcagcggcct cgtcgcccag 8040 gcatcccctc gcgccaccga cgccgctctg gaagcgcgac cgcagcgccg ccttgggccg 8100 caagttgagc cggctgtgga tctcctggag cgtctcgtcc gagaagacca gctgctccgg 8160 gtgctcgagc tccttgttct cgg 8183 // ID Copia-7_ES-I repbase; DNA; PLN; 5724 BP. XX AC CABU01007306; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_ES_; KW Copia-7_ES-LTR; Copia-7_ES-I. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-5724 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01007306; Positions 11270 16993. XX CC Positions [2226-2768] - Integrase core CC 'GCCTG' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 49..1581 FT /product="Copia-7_ES-I_1p" FT /translation="MSASDSGSVAGLGEETSATQQQHAEDPAIARLEGQLS FT QLMSVVMELKRKEPGDAVAGDASRGGGAAVPSQREALPPGGGGAFSQETAR FT DGRNHPRESSWDNIPGASPGVPARVTTGWAGRSGANPVGPAGMSPGVGPDR FT GEARGLNPQGEQTAIRGARAFFDGYSSSSQKRVTVNAPRLEGESRGHGYDS FT WRKALIQAAKTVGLDGQLIGNAEKHAPVGDPNRPSSELYSLGYTSDEVQRG FT LQAFHFVTTAIVREADKAIVNKCETAKEILAELDKVHNPESQGSKQALMKK FT MFRFTIPAHSNSNPVEHLYTLELLYSRLREKGVNADTPFVLAHFVDALPPE FT YQQAKFLLETATNLDRGEIIRVVSTVHASLPEGRRATKGQRKAEHAFLASD FT GGNRGGAPGRSSGGHSKGGGGGGSQKGKGGGRKGGGGGNSGGGGGGAGSMA FT RPLLPVRREGSPGGRLYQAGAPAMREMPGLRTRQEQVLVRAGGARGGAAGL FT GRHRTGRGRGGASGP" FT CDS 1211..2338 FT /product="Copia-7_ES-I_2p" FT /translation="MLSSRATVATGAERPAAAAAATARAAAAVAARRGKGV FT VARAVVVATAAEAAAVQVAWHGRCFRCGEKGHQAAACTKPEPLRCEKCLGY FT GHDKSKCSSEQAVLAVELPVLDATALDVAEEALVVRDFTGEWNRVVDRGGV FT EQARQERFVADTGATNHMFPSANAFENYHECDRRLSVAAGKQAFAIVGYGD FT VRVSIGSRVGTTDLLLKRVAHVPELNYNLVSLTALLRQTKGRLAADERELE FT VFVGGGESVYFPLWGDLFVQTGHRIESGRELACAMIAPGNAKANRTPVDIN FT DFHCAHGHSHEVLLKNTAKQQGVTLVGQLRECMGCSTAKGLSKPIPNRTST FT RAVKETAESVRGFEWEGKGAELGGEVVHSHCKG" FT CDS 2451..5411 FT /product="Copia-7_ES-I_3p" FT /translation="MVVRSDNGGEFFEGEFGKLCRKYCIKQEFTPAYSPEY FT NGVAERALGLIKDAALAARIQATILYPEAPSYPSLWAKATAWACNALNCTS FT TTSNPDKKSPYEMWHGHPPPPEATYPFLKPAVYKVKRTHKSEPKAKKCFYL FT GPGINTNRDCVRILNEKRQAITTRNFTWQSVPAAPTAHPQPLPPIAEEDEE FT LTTGEHEGGGGASCHGGGRAEGEPEDGGFHLDTTANPGPAEPPARDAPAAP FT PAAPQESGVGDAGDGAPSSREGASVAPSTTSTGMADVGGGEDDRRSSSSSS FT SSSRGGGGSSSSSGSSSSSSSSSSSGGGSDSGSDTDIPALRGPEERRLARF FT GEPAELTSRRLRENPRRNTRYESSTSAEGLLARHASAAGLPTLPITSTEEY FT THWMLACVVDVVEGLEARAVQALLCERAEEANIARQEAEDFLLGAEDLVLN FT SPDAFVRALASTELSTESPIGKRPSDVESPPMTVAGVAKSVYREGWEQAMR FT EEFDGHLDTGTFSFVDGTPEGRRPVSSKWRFTWKTNKEGKIEKFKARLVAR FT GFSQIPNVDYFYSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKL FT DEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQ FT CKADPCVFRKMKDGVVVMIIVIYVDDILVAGSDDDCKELLASLNKAFPTKD FT LGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSPIPASPGAD FT VGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERH FT WKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLAT FT TVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETS FT GGSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVS FT TSEQHADMLTKALSKSNLQYHRKKLMNLPELL" XX SQ Sequence 5724 BP; 1266 A; 1555 C; 1901 G; 1002 T; 0 other; ctctagagtt tagattgatt gtccctcgag ggatagccgc atcgggtcat gtctgcgtcg 60 gacagcggtt ccgtcgcagg gctgggggaa gagacatcag ccacgcaaca gcaacacgcc 120 gaggatccgg cgattgcgag gctggagggc cagttatcgc agctgatgag cgtagtgatg 180 gagttgaaga ggaaggagcc tggtgacgcc gtggcgggcg atgccagtag gggcggcggt 240 gctgccgtcc caagccagag agaggctctg ccgcctgggg gcggcggggc gttttcccag 300 gaaacggccc gtgatgggcg aaatcacccg cgggaaagca gctgggacaa cataccggga 360 gcgagtcctg gggttccagc gagagtgacg actggctggg caggtagatc gggagcgaat 420 cctgtggggc cagccggaat gagcccgggc gtaggaccgg accgcgggga agcgaggggg 480 ttaaaccccc aaggtgagca aaccgcaatt cgaggggcca gagcattttt tgatgggtac 540 agcagtagta gccaaaaacg tgttacggtc aatgcaccgc gtctcgaagg ggagagtcgc 600 ggccacgggt acgactcgtg gaggaaggcc cttattcaag ccgcaaaaac cgtaggcttg 660 gacgggcagc ttatcggcaa cgccgagaag cacgcacccg tcggtgaccc aaacaggcct 720 agctcggagc tgtatagctt gggctacaca agtgatgagg ttcagagggg cctccaggcg 780 ttccactttg tgactacagc catcgtccga gaagccgaca aggcaatcgt gaataaatgc 840 gagaccgcaa aggagatcct tgcggagctc gacaaagtac acaacccgga gtcgcagggc 900 tcgaaacaag ccctcatgaa gaagatgttt cgattcacga tccccgcaca cagcaacagc 960 aaccctgtcg agcatctata cacgctcgag ctgctgtact cacgactgcg ggaaaaaggg 1020 gtcaacgctg acacaccctt tgttctcgca cactttgtcg atgcccttcc acccgagtac 1080 caacaagcca aattcttgtt ggagacggct acaaacctgg accggggcga gataatcagg 1140 gtagtcagta ccgtgcacgc gagcctcccg gaggggagga gggccacgaa gggccagcgg 1200 aaggcggagc atgctttcct cgcgagcgac ggtggcaaca ggggcggagc gcccggccgc 1260 agcagcggcg gccacagcaa gggcggcggc ggcggtggca gccagaaggg gaaagggggt 1320 ggtcgcaagg gcggtggtgg tggcaacagc ggcggaggcg gcggcggtgc aggtagcatg 1380 gcacggccgc tgcttccggt gcggagagaa gggtcaccag gcggccgcct gtaccaagcc 1440 ggagcccctg cgatgcgaga aatgcctggg ctacggacac gacaagagca agtgctcgtc 1500 cgagcaggcg gtgctcgcgg tggagctgcc ggtcttggac gccaccgcac tggacgtggc 1560 agaggaggcg ctagtggtcc gtgacttcac aggcgagtgg aacagagtcg ttgatcgagg 1620 gggtgtagag caggccaggc aggaaaggtt tgtggccgat accggcgcaa ccaaccacat 1680 gttcccgagc gctaacgcgt tcgaaaacta ccatgagtgc gatcgacgtt tgagtgtcgc 1740 cgcagggaag caagccttcg ccatagtagg ctacggcgac gtgagggtgt ccatcggttc 1800 tcgcgttggg accacagacc tgctgttgaa acgggtcgct catgtgccgg agctgaatta 1860 caacctcgtg tccctcacag cccttttgag gcaaaccaag ggccgcttag ccgcagacga 1920 gcgtgagttg gaggtgttcg ttggtggggg ggagtcggtg tacttccctc tatgggggga 1980 cctgttcgtt cagactggtc accgcataga gtcgggtagg gaactagcct gtgccatgat 2040 tgctcctggt aacgcgaaag cgaaccgcac ccccgttgac atcaacgact tccactgcgc 2100 gcacggccac tcccacgagg tgctgctgaa gaacacggcg aagcagcaag gggtgactct 2160 ggtgggccag ctccgggagt gcatggggtg ctcgacggca aaggggctat ccaagcccat 2220 ccccaacagg acgtcaaccc gagcagttaa agaaactgca gagagtgttc gtggatttga 2280 gtgggaaggc aagggtgcag agcttggggg ggaagtggta cactctcatt gtaagggatg 2340 actgcacgag gtggaaccgc gtctacttct tgaaaaacaa gtcagacgct gcagaggcat 2400 tcgagagata cctagcggaa aacagggcag acggagcccc atccgaggtc atggtcgtgc 2460 ggtctgacaa cggaggagag tttttcgagg gagagttcgg aaagctgtgc cgcaagtatt 2520 gcatcaagca ggagttcacc cccgcataca gcccagaata caacggtgta gctgagagag 2580 cactgggact gataaaggat gcagcactag ccgcccgcat acaagcgacg attctttacc 2640 ccgaagcacc aagctacccc tccctttggg ccaaagccac agcttgggca tgcaacgccc 2700 tgaactgcac ctccaccaca tccaacccgg acaagaaatc gccgtacgaa atgtggcacg 2760 ggcacccacc tcccccagag gcgacgtacc cgttcctcaa acccgccgta tacaaggtca 2820 agcgcacgca caagtcagag ccgaaagcaa aaaagtgttt ttacctcggc cctggaatca 2880 acacaaaccg tgattgcgtg cgcatcctga acgaaaaacg ccaagcgatc accactcgca 2940 acttcacctg gcaatctgtg cccgccgccc cgaccgcgca cccccagccg ctgcctccca 3000 ttgcagagga ggacgaggag ctcacgactg gggagcacga gggcggaggg ggtgcgtcat 3060 gccacggtgg agggagggcg gagggagaac ctgaggatgg aggtttccac cttgacacga 3120 cggcaaaccc ggggcccgcg gagccgcccg cgcgcgatgc gccggcggcg ccgccggccg 3180 cgccccagga gtcgggcgtg ggcgacgctg gcgatggcgc cccctcgagc agggagggcg 3240 cgagcgtcgc cccatctacc acgtcgaccg ggatggccga tgtgggcggc ggcgaggacg 3300 accgccgcag cagcagcagc agcagcagca gcagccgcgg tggcggcggc agcagcagca 3360 gcagcggcag cagcagcagc agcagcagca gcagcagcag cggtggcggc agcgacagcg 3420 gcagcgacac ggatattccg gcgctccgcg ggcccgagga acggaggctc gcccgctttg 3480 gcgagccggc cgaactcacc agccgccgac tcagggagaa ccctcgccgg aacacgaggt 3540 acgagtcgtc aacgagtgcc gaaggtctgc tcgcccgcca tgcatcggcg gccgggctgc 3600 ccaccctgcc catcaccagc acggaggagt acacccactg gatgctcgcg tgtgtggtcg 3660 acgtggtgga agggctagag gcgagggcgg tgcaagcgct gctgtgcgag cgcgcggagg 3720 aggccaacat cgcgcgccaa gaggcagagg acttcctgct gggagcggag gacctcgtgc 3780 tcaactctcc agacgccttc gtgagggccc tggcgtcgac cgagctgagt acagaatccc 3840 ccataggcaa gcgtccgagt gacgttgaat ccccccccat gaccgtagcc ggcgttgcca 3900 agtctgtgta cagagagggg tgggaacagg ccatgaggga agagttcgat ggacacttgg 3960 acacgggaac gttttcattc gtagacggca cgccagaggg gcgtagacct gtgagttcta 4020 agtggcgttt tacttggaag acgaacaagg aggggaaaat cgagaagttc aaagcgcgtc 4080 tggtcgctag gggtttttcg caaattccga atgtggacta cttctactca tcctcccctt 4140 gcccatcatc cgcatccatt aaactgatgc ttgcggtagc caatgagaaa tcattgaaac 4200 tcaaccactg ggatgtcaag caggcgttta cacacgctaa gttagacgag gatgtgttct 4260 tgaggctccc cgcggggtgc ggggaaaaat cccacaaagt tgtgaaggct gagcgtgcta 4320 tttacggctt gaagcagagc ggcaggcagt gggggtacca cgctgccgac acgcttgtag 4380 aaaacgggtt cgagcagtgc aaggcggacc cgtgcgtctt ccgcaagatg aaagacggtg 4440 tcgtggtgat gattatcgtg atttatgtgg atgacattct ggtggctggg tctgatgatg 4500 attgcaagga gttgctcgct tccctcaaca aggcattccc cactaaagac cttggagagt 4560 gtgtgtggtt cgacgggtgt gccgttgaga gagacctaga ggctgggacc cttagaatct 4620 cccaaaccgc gtacattgac agcatcgtga atcgctttga tgtgcaatcg acctccccca 4680 tccctgcttc ccctggtgct gacgtaggac cgaagcgaga tgacgaaagt ggaggggagt 4740 ggccggtgag ggaggccatc ggcagcatga tgtgggtgtc gacgttctcg cgcccggaca 4800 tctcgttcgc tgtgcgtgcg gtagcgcgcc acgcccacgc ccctgccgag aggcactgga 4860 aggcgatacg gaagatcctc gcctacctca aagagacgag ggacctcggg atcacctaca 4920 aacggggatc ggggctgggg ctggcggtgt acgtggacgc tagctacgcc gacgctgagg 4980 atagacgttc ggtgtcaggg ctggcaacaa cggttggagg aaccgtcatc agccacggta 5040 gcaagacgca agctatcgta tctttgtcgt ctacggaggc agagtacatt gctgccggag 5100 agggtgtgaa agaagctttg tttgtgcgtg cagtgctttc gtttattgcc ccagagacca 5160 gcggcggtag cattcaggtc cttgaggaca atcagggggc catggctttg gtgcagaacc 5220 cccttagctc agcgcgtagc aagcacatcg acgtgcggta ccacttcatt cgtggattgt 5280 ttaggtcggg tgacatctcg atcaagtttg tgtcgacgtc ggagcaacat gcagacatgc 5340 tcaccaaggc tcttagcaag agcaacctgc agtaccaccg gaaaaagctg atgaatttgc 5400 cggagcttct gtaggatttt ctagcgcttg gggaaggtca tgtataccat gcggggaaag 5460 atgcattact gtcgcgggct gtgtcccaat ggcaggagta ggaggcttgc ctcgcattct 5520 tgtcttcgcc ttggccttcc tgataagtgc ggccgttgtg atccgccgtg atagcaatgg 5580 tttgtgttgg atgggattta ttttcgaggg gttttgcccg ggcgccgggt ttcccctcga 5640 ccaccgtatt ggcattttat tgatgtatcc ggggtgtttt tgccccactg atggttagtc 5700 acttgcgtga agaaccaggg aggg 5724 // ID Copia-5_PR-LTR repbase; DNA; PLN; 126 BP. XX AC AAQX01002986; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-5_PR_; KW Copia-5_PR-I; Copia-5_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-126 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002986; Positions 146 21. XX SQ Sequence 126 BP; 27 A; 28 C; 39 G; 32 T; 0 other; tgttgcggat tccagtgtac tggctcccgc cgcttggtga aacatgcaaa gcatagtgat 60 gcagacatgc atgtgtgggt tatttatccc gagaaggcac ggaggtgctg gaggttttcc 120 cacgca 126 // ID Gypsy-18_PSo-LTR repbase; DNA; PLN; 176 BP. XX AC AAQY01000159; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-18_PSo_; KW Gypsy-18_PSo-I; Gypsy-18_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-176 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000159; Positions 206470 206645. XX SQ Sequence 176 BP; 51 A; 48 C; 41 G; 36 T; 0 other; tgtggagtag tttcagactt gaatccacaa cggacgcagg atctacaacg gacgcatggc 60 gatccttgcc aggagtcgcc gtgctagcag tcgttctaga aaccaaccgg caggagcttc 120 gcgaagctgc attcaataca ctatcgcttt tgcattcaac agcacaaaaa accaca 176 // ID Gypsy-39_PIT-LTR repbase; DNA; PLN; 273 BP. XX AC AATU01009731; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-39_PIT_; KW Gypsy-39_PIT-I; Gypsy-39_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-273 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01009731; Positions 18308 18580. XX SQ Sequence 273 BP; 58 A; 69 C; 63 G; 83 T; 0 other; tgtaatgttc tcacagctgc tgtaacagct gttggtacag ccgctgcgtg aacaagaggc 60 tgagatggat tcttcatcca caaggctact ggtatcccta catgatggct gctagcgttt 120 gttctgatct cacagctgca tgttgaccag tggagtctcg actcgagact ctcgagcgag 180 ctccacttgc attgattcgt gtctttagtt tttcgatcat tctgcatttt gctcaataca 240 actcagttac tctgacagcg ccgtggtcca aca 273 // ID Gypsy-11_PIT-LTR repbase; DNA; PLN; 315 BP. XX AC AATU01000605; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PIT_; KW Gypsy-11_PIT-I; Gypsy-11_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-315 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000605; Positions 4740 4426. XX SQ Sequence 315 BP; 86 A; 62 C; 73 G; 94 T; 0 other; tgtaatgggc ccaactccaa ttacataagt aggtagatat ttctttagtt attacataag 60 taggtaaagt ggcacacggg tagcgtgtgc caaggtgtca tcatctgatt ggttgatagt 120 gaggagccag actcacttat tgaccaatca gatatagaca tgtgtttgag tggttcacac 180 gaggccaggg gtagccgccc tggtcctaaa taaatcagag ttgaatttga cacaaacctt 240 tgacttggtt ttattattgc gagcttcctc cgcattacag tgtaagctag taacggtatc 300 tcttaccccg ttaca 315 // ID Gypsy-5_PR-LTR repbase; DNA; PLN; 262 BP. XX AC AAQX01000569; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-5_PR_; KW Gypsy-5_PR-I; Gypsy-5_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-262 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000569; Positions 104850 105111. XX SQ Sequence 262 BP; 85 A; 83 C; 55 G; 39 T; 0 other; tgtaacgatc tgcaagtaca aaagcagagc gacacgccat catcaggaga gtccgcacag 60 taagccgaga tcgacgcctg catactcacg aaggttgcgc aagcacgcgc cacggcgaac 120 catagccaac cactgcatgt tcaagagcgc gctcccagcg cgctcgtaga tagacagata 180 gcacacacac acacacacac acataagatc aattcagttt tcaatctgcc ttgaaaggca 240 aacgccccag ccaaacctta ca 262 // ID Gypsy-2_PSo-LTR repbase; DNA; PLN; 1953 BP. XX AC AAQY01000320; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_PSo_; KW Gypsy-2_PSo-I; Gypsy-2_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1953 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000320; Positions 60993 62945. XX SQ Sequence 1953 BP; 437 A; 472 C; 646 G; 398 T; 0 other; tgtgaaaagg cccggtggat ttcgccaccg aacccatgtc cagctgaccc gtttcaatcc 60 aggacgctga cccgtatcaa tcaagcagac ttcaagtgcg tcatggccgc gatggatctg 120 gaccaccaac tgtcggacac gagccgtgcg acgaaggaag ctgagcccga ggtctgggcg 180 gagctccgct cagactctgg gcttgagcga agattgtctg agatccgaga tgtccggtgt 240 tgggaatccc aagtctgagc tgagtccagg aagctgggag aagctacgtg gaatctgagc 300 tgagcctcga gtgcgatgac cggagtcccc gctcaagtcg aggaactgag cggaacctgg 360 tggagcgtgg gttcgacctc cccggtggtt atggagccgt tgcccaaggt gtcgagctga 420 gtcgaggagc aggcgtccga gcgaggtcgt gccgagcccg agcccggttt ctactgtgat 480 catggaacct tcacgaaagt tgacaagctg ggcgaggatc gaaggtctga gcggagtgac 540 gtggagtccg aggccggctt cgaatgcgat gtttgaagtc tttgctcaag tcgagaagtt 600 gagcggagtg gcatgggcct gagcggagtt gtcggagtcc tgttgaagtg ccgagtgaag 660 agtcgctgga cttaagtcca ggcagtggta ctgacggcga agttggtggc accggcgagt 720 acactcatcc ggtgaatcag ccatgagcca gcctacattg ggtgcgaccg cccaagattg 780 cggacacttc aagcggatct caacggcctc cagcggcttc aagacgacgc ccgccgacgt 840 ggagccgccg cattggccaa aaccaaggat gtcgggcgga tcttcgaggg agcccggtaa 900 gcatacagcc gacgctcttc gcgcagccag tcagtgtgta cccaggggga tatcgcgccc 960 ccacttagtg agtcctagtt tgtgcatgtg taaacattta aacagaggtc gttttgcccc 1020 ggaggacgca aatggtggag gtctttggcc tgaaggtgtc ttggcgatca tccacacaaa 1080 ttcaagttaa catatcaacg ttgtcagagt gcttcggtgc gacggcagta cggttatttc 1140 atattactgt tacatcttag ggtgtatttc atattttcgg gtggaaggtg atccattctg 1200 aggtttagac agggtagttg tattgtgtac ttggggacat tggcgtgccc cggtgcattg 1260 tgtgattatt agtatcggtt cattgtggac ctggtgcgcg ggtagtccca gggtgtgcgt 1320 gagtgccttg gattcggact aggctcaaac cgagtcacta actccagacc gggtcgttgc 1380 ttgactcgaa gagaagaaag gagaagctgg tgcgagcctc gcccaggctc agagaaataa 1440 aggcgaactc ggcccagacc caggccgacc gggaaagaag gggtgttgtg gttctgagcc 1500 ggaaccaaag agaggaagtg gaggctatat tgtgtgtggt gttgtgttca ttaaggaaaa 1560 cccggggcat ttcgggctgt ggacacgtgc ggaccatgac tcgccaagtg gggagtgagt 1620 ctcgtctggg aacacctccg gagaccttca acatcgacag cagctggtgt gaccgacgcg 1680 agtctgggcc cacagcgtag ccgtgatcaa aagaaccgcc aaggggatcg cagagtgagg 1740 aacacacgcc tcgcccgacc cgagtcggag ctgagccaag cgttcaagcg gctaagccta 1800 gcgaagtgga gtgggagtgt tcgctcagtg gaaggagctg agcgggacta ttgcagcgct 1860 aagcagggct gagccaagtg gtgcaagggc tgagcgaaga ccaaggtcga gcggtctagc 1920 aacctgagca aagagcacgg gcgcttcgtc aca 1953 // ID IFG7_I repbase; DNA; PLN; 5273 BP. XX AC AJ004945; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Pinus radiata gypsy-type retrotransposon IFG7_I, internal region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Gypsy superfamily; IFG7_I; internal region; internal portion. XX OS Pinus radiata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Coniferopsida; Coniferales; Pinaceae; Pinus; OC Pinus. XX RN [1] RP 1-5273 RA Kossack S.D. and Kinlaw S.C.; RT "IFG, a gypsy-like retrotransposon in Pinus (Pinaceae), has an RT extensive history in pines."; RL Plant Mol. Biol 39(3), 417-426 (1999). XX DR Genbank; AJ004945; Positions 332 5604. XX SQ Sequence 5273 BP; 1862 A; 868 C; 1061 G; 1482 T; 0 other; tttggtatca gagctttgga ttgtagggtt tcattgctcc aaataggtca tcgtggcatt 60 ttcactataa cttttttctg tgacgtttca gaagctaaaa aacaaaaccc attgagacgc 120 agtcgcattg aacctcgggt ccaaatttca gaacttttcg cactatattt gcggagatat 180 gatctgagga agttggtctt tttgcagact cctaaattac attccaaaca ggtgacctgg 240 ggaaaatcgt cataactttc tctttgagca tcggattgaa atttcataag aaggtataga 300 aagaggacga aatttagttt cttctatata tttttcatag ctaaaggtag aaacagtgac 360 tcatggcacg tcgtacaagt tttctctact gaactagtct ataataaggt cactgtggga 420 gatttggcat aactcttccc tggagaatcc aatttggatc agactagtgg cattggaaag 480 aggacgcaga gggctattat aggttgcaat tttagaacta gatgatccga aattacagag 540 atacatcaga ctcaatatca agctcctaca aagtcaaaaa aggtgtgtag tttcttttta 600 aattttcgca taagcttggt ttgaaaaatt agtttgaagg aattcaaagg gcatagtaaa 660 acattattat tggtaattga tgccccgagg aaagaaaatg caaacaccta gtaagcaacc 720 tgaaagctct agcatgactc atgaagaaga ggaagaaatg caacattata tatcaaaatt 780 acgagactaa gtgcaacaag tgtcacttgc acataaagta aaaaaattta agatggatgg 840 tttaaagaaa gatgtagaag ctaagatgaa tggtttaaag aaaggcacaa aagctaagat 900 ggactgttta aagaaaggcg tagaaactaa gatgaatgac gtggaagcta agatggacga 960 tttgaagata gatttgaaga caagcatgga agatttgaag atagaattga agatagattt 1020 gacaaaattt ctacaagaaa tgcttactaa tggtgaaagg gtagtaaagg aaactcatga 1080 tgagaaaaaa agaaatgtta atcatgattt catagactct aatgttggat cgaagaccca 1140 ccatattcca aaaatcaata tgaggaagtt tgatggcaag gatcccgcaa catggatatt 1200 acagatggag caatttttcg atctcaataa tgtgcaaaac gcacaaaagg tacgtattgc 1260 aagtttatat ttggaaccaa atcagtttgt atggtatcaa tggctttgct cttgtaaaca 1320 aattatcact tgggcaactt ttacggaaga attgacaaca cattatgagg atacaaaaag 1380 caacatcttt ttttagccaa tttataagtc tcaaacaaaa ggattcaata atggagcaca 1440 ttgaggagtt ccaaaaattg aacataaggg taaaaaatat tctagaggag cataggatta 1500 atgtgttcat agggacttta aaggataata tccaacatga tgttcgcctt tgggaacctg 1560 attcattaga gaaggcattc aggttagtaa gaaaaatgga aagcaaaatt atggcaaccg 1620 ggaagcatac cactcacatc tataaagatg gaagtgtttt tgcccctagt cttccacaac 1680 ctataatgtt gacaccacaa aaattggaag aaaaaagagc aaaagggctt tgttatagtt 1740 gtgatagtaa atacactaaa ggtcataagt gtgctgagaa gaaattattc tacatagatt 1800 gtgaagagga agaagaaagg gagcaagaaa ggtcaaaaga agaggatata ctctaggaac 1860 aaagcctaga taaagaagaa atgaatccga ccatatcttg taatgcattg gctggaatta 1920 ccactcctca aaccatcaag atagaaggac aaatcaagaa gaaaaaggta atagtgttga 1980 ttgattcagg aagtacccac aattttattc attgtatggt agcaaaagaa ttgaattgct 2040 tcctatatcc aacagcagag tgtcaagtga tggttgcaaa tggaggaacg ataaattgct 2100 ctggaaagtg ccataatatc aagctatcca tggaataata tgtattgact agcccaatgc 2160 tttccattcc aatgggaggt gctgatgttg tactaggagt ccaatggcta tagtccttgg 2220 gtacaacaac ttttaatttt caataacttt tcatgaaatt ttctgcggaa ggaaaggaag 2280 ttgaattaag gggtattgca aggaaactag gaaagataat caaatctaat ggtatgacaa 2340 agcttctaga aaaggaataa agaggtgtaa ttgcacaatt atgttcacta gatgtttcca 2400 cattggaatc atatatttct ctagatctcc agaaagtctt ggacaatcat tccaaggtat 2460 ttaagactcc caaagatctc ccacctattc atgatcatga tcatgctatt catctgattc 2520 caggaagtgt tcctccaaac atcgcgccgt aaagatatcc ctatgcccaa aagagtgaaa 2580 ttgaacgtat ggttacataa atgctagagg ctggtataat tcaacctagt caaagttctt 2640 tctccgatcc agtagtattg gtgcacaaga aggatggatc atggtgcatg tgtccggatt 2700 atagggagct caacaagctc actatcaaag ataagtttcc cattcctgtc attgatgaat 2760 tactggatga attgcatgga tcaatttact tcaccaaatt ggatcttcgt tcaggatatc 2820 atcaaatcag aatgaagact gaagacattc caaaaacaac atttagaact catgagggtc 2880 attatgaatt ttttgtcatg ccttttggcc ttaccaatac accttctaca tttcaaggtt 2940 tgatgaattc cattttcaaa cccttcctta gaaaatttgt gttagtattt tttgatgata 3000 tactaatcta caacaagtct tggaaggatc atgttgaaca tgttgacagg gtgctacaat 3060 tattggagga gaaaaaatta tatgcaaaaa gatccaaatg tttctttgtt gtacaagagg 3120 tggaatatct gggtcatatt gtatctctat gaaggagtta aggtataccc taacaaaatt 3180 aaagccatta aggaatggaa aatccccaca tccataaagc atctgcgagg atttctcggg 3240 ttgacagggt gttatcgcaa gtttgctaag aattatggga gaatagcaac acctctaaca 3300 acattattga agaaagatgc attttcatgg actccagaag caacaaaggc cttcgaacat 3360 cttaaagagg caatgtgcca agcactagtc ttagctacac cggacttcat gaaaaccttt 3420 attgtggaat gtgatgcttc aggaaatgga attggtgctg ttttaatgca agatgaaata 3480 cccattgctt ttgaaggtca tccaatcagg ggaaagtttt tacacaaagc tctttatgag 3540 aaggaaatgt tggcaatact acatgcactt aagaaatggc gaccctacct aatgggaaga 3600 cacttcaatg taaaaacgga tcatgatagc cttaaatact ttttagaaca aagattatca 3660 tctgaagagt aacaaaagtg ggtcacaaag atgttgggtt atgactttga aatcatctac 3720 aaaaaaggga agaaaaatgt ggtggcaaat gcactctcaa gaaaggatga ggatgtggaa 3780 gcattgttgt gcaccatttc attatccaac tagattggat aaatgaagca agggaggaat 3840 ggaagaatga tgaagaagtg tgggcactta ttcgaaattc acaacaagat tctagtacat 3900 ttgatacatt tagctagaaa aatgattcgt tatggtacaa ggatcgctta tacctctgta 3960 agaattccca actcaaacaa aaggcttcta atggaatttc acacttctcc cttaggaggg 4020 cactcaggat tttcaaaaac ttaccacaag gttaagaagg aatttttttg ggatggtctt 4080 aaatcagata ttcaaaagtt tgtggtggaa tgtttggttt gccaataaaa taaagttgca 4140 acaattaaga ccccgggtct attacaacct ttatccattc caagccaatg ttgggaggac 4200 gtttcaatgg attttatcac aggtttaccc aaatctgagg gaaagagtgt catcatggtg 4260 gtagttgaca gacttaccaa gtatgcacac ttttgtacat tatcacatcc atttaaagcc 4320 agtaaagttt ctactgcatt tatgtaaaca attcaaaagc tacatggaaa tccaaagatt 4380 attgtatgtg acagaaatct cattttcact ggaaattttt ggacataatt attttcttgt 4440 cttggtactc tgttagctca tagctcatct tatcatcctc aatctgatgg gaaaaatgag 4500 atagtaaaca aatgttttga aggatatctt cgttgctttg tatctgataa atagacacaa 4560 tgggtcaaat ggttgcctct ggctgaatgg tggtataaca cttccttcca tatagaaaca 4620 aaaatgaccc cattcatgac actttatgga tatcaacaac catccatcac atcatattta 4680 agataaattt ctaaggttca agcagtggaa catcacatcg aacatcaaca acaagtcctc 4740 caactcttaa aggataacct cgtgttggca cataatagaa tgaaacaaca agcagatcaa 4800 catcgcatca aaagaagttt tgatgtaggt gattgggtat tcctacggct acaaccatat 4860 aaacacatgt ccctcaagaa agctaagaag gataataaat tatcaccaaa gtattatggt 4920 ccatacaagg tgttgcaaaa gattggtact atggcataca aattggagct tcctacagct 4980 tctcgagtgc acctagtttt ccatgattcg tgtttaaaga agattatagg cgacaagctc 5040 ccagttcaaa caatttttcc agaacttgat gaggaaggaa aaattatatt ggaaccggaa 5100 gcagccacag aaacaagaac tcgatagcta cgaaattgat caatttcgga gtatctcatc 5160 aagtggaaga acttatccac tgaagattcc acatgggagg atgataattt tatacagaag 5220 catccagaac tactcaagcg ttgaggacaa cacttttttg aaggagaggg aca 5273 // ID Copia4-I_VC repbase; DNA; PLN; 4875 BP. XX AC scaffold_80; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia4-VC; KW Copia4-LTR_VC; Copia4-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4875 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 109-109 (2008). XX DR Genome; scaffold_80; Positions 269134 274008. XX CC Positions [1951-2499] - Integrase core CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 2014..4233 FT /product="Copia4-I_VC_1p" FT /translation="MDLCGPMSVESMGGNYYIATFLDDYSGLSQIALLKNK FT GEASKTVQTQLQLLESNCGRKVEAVRMDRGREFLNAELCDYYGWKGIQNQT FT TAPYTPQQNGRAERLNRTLLEKVRSMLYESKLPTNMWSYAVLTANYLRNRS FT PYRDLTYERFYGEVPDVSNLRVFGCVVYVRVPDSQQSKLEPRSIKGVFGGY FT EPDTKAYRVVLPYGGHIVSRDVKFQEHVFGLKEQESDRYLGEDDEELPPLI FT NEEGEDEVEDSSDPESEGDLVEYLEEGLEEEVEVNQEVNPDGGESPGVNPP FT QPGLEEPSGQGQQLRHSERSNKGKPPERLNMVAVLEEPRTYKEAKRSPAWP FT MWKQAMDQEMASMQLHAVWELDMPPKGVRPLPVKWVYTLKRDEKGDIVRYK FT ARLVAKGFVQVEGRDYEDVFAPVSKHTTLRALLSVVAVRDLELHQLDVKTA FT FLNSTLDEVVYVQQPPGYEQGAPFLACKLGKALHGLKQAPRAWYARLKKEL FT VDMGFLISQADPGLFFKDVQGERVYVLVYVDDQLIAAKDLAVVQRLKSKLN FT KLFDIRDLGEARVFLGFEIERDHAQCSLKLSQHRFAVDLIKKYGMADANPR FT LVPMSKGTVLRAEGEPLDVGEFRYGELVGSLLYLMVGTRPDLAYSVGALSR FT YMSKPTVQHWEAAKGVLRYVAGTTAKCILFSAKSAEPLHGYCDSDYASCVD FT TRRSTTRYMFLNAGGVLSWSSRLQPTVAMSTAEVYVVYMS" XX SQ Sequence 4875 BP; 1177 A; 1029 C; 1522 G; 1147 T; 0 other; gtaagaagaa tgcctaaggg tgcatttcca gtgcggatta aggccaggga ttaaccctct 60 gtcctccatc gatacttgct caaacggcta agttgttggc aaacttacct cgcttttcca 120 acctttggtt tccttatgga acgaaactat gtggtatgct cgtaccaaag aattccgtgc 180 cctaatccct ggccttaatt ccgcactgga aatgcaccct aaagtagata agcgctgctg 240 tgctttgacc tgctcattgc gacccaattc tggccaaaag acgcgcctta catcatccat 300 aggcctagca tgtttacgtc tttgcgaaaa ctttcatagc agcgtggcgc cggtctctca 360 ggaaaaacag caagaattag agggcctttt aggacatacg cggcgaggat tgtctttcag 420 gaggctattt tcatcaggcc acttagtgca gcgtggtata tgcttctttt cacaagcgag 480 aagcatcaga tcaccaaaga gcagaccgcg cgggctcgtg acctgcggca cctggcctgc 540 tcgaagtgcc tggaacaagt gactggtggc aatgccgttg gaacagcatg ccgttgacgt 600 ccttactgat gcgagcaacc ttggcatcgg ctatgtctcg tggctactca accccgttca 660 gggcagaacg attaagtcct gcaggaacgt gcaccagttg ctgaagtcac gtccagaact 720 gcaccggcgg cttacccagg tcttagatga cttggaggtc gctgtgcgtg cactgcaaca 780 gcctggtgcg cgtgacgagc tggtgacgct ggcagtagct catgatacag gagtgatcag 840 acggcagcag caacagcagt ggtggtgaga gcgggggaag ggttcaaccc ggcagcagca 900 gtattgggta ccaattttca tgatagccca ttgacagctg ctgtggaggg cgggtttaac 960 ctgttggcag cagcagcagg tgccaatgcc cccgatagag ggggtggtca ggcggcaagg 1020 aggagggagg gggcgaggag ggagggaaag aggagggggg agggggcgag gaggagggag 1080 gggccgagga gggtgggaaa gaggaggagg tggggggcga ggagggtggg aaagaggagg 1140 agggaggggg tgaggaggga gggaaagagg ggggagggaa agaggatagt gcagtcgtgg 1200 aggaagggag ccaggatggc atgactgagg agggacagag tgagagtggg tacaacatga 1260 cgtgcatggg tgggtcctcc aagcggccag tacgggctgc cagcaagcaa ggcaacagaa 1320 agtcctacat ctcccgtcgt tatggctagc attaaatgcc ggtggcctct ttggcaaaat 1380 atgggtttcg tttttaggag gacggaaatc caatgggcta attaaggggg atcagtttgt 1440 tcttcaccga gtggtaaacc tgatccgtcg tgtatctgta gacctgggtg aacacgtaat 1500 gtacgccgtg ggctacggag atgtgattct agaactgggc aaggtttggg acacgaaaag 1560 gatgtactac gagaaacgaa cgattaagtt caagggtgta tccttcgttc caggctttgg 1620 ataccggtta ctatctcttc ggcagcttac agtgcgtgga gctacgttta ctgggcgcac 1680 tacctacatg acggtgcaaa atgaccagga gggatggttc tttagcacag attgcaaaga 1740 ttcaatttac aaattgagtg cgcgcgagtg gagtccacac gtaccagtag ccctacctac 1800 aactccggct gatcttcacg tgaagctgtg gcatgcacgt tttggccacc tgagctacgg 1860 caatatggtg cgcttgaaga atgaggaaat ggtgcggggg ttaaacgtgt cagctgaaaa 1920 attgcgagaa gccggtagtg cttcggccgg cacccatgta agccgttccc agagtctgaa 1980 tcatgtgcga aggagtgctt agatttagtc cacatggacc tgtgcggtcc gatgtcggtg 2040 gagtcaatgg gcgggaacta ttacatagcg accttcctgg acgactactc tggactttcc 2100 caaatcgctc ttctgaaaaa taagggtgaa gcgtctaaga ctgtccagac gcagctccag 2160 ctgctcgaga gcaattgtgg acgaaaagtg gaggcggtga ggatggatcg tgggcgtgag 2220 tttctaaatg ccgaattgtg tgattattat gggtggaagg gcattcagaa ccagaccact 2280 gccccgtata ccccgcagca gaacggacgg gcagaacgat tgaaccggac gttgttggaa 2340 aaggtgcggt cgatgctata tgagagcaaa ttgcccacga atatgtggtc atacgccgtg 2400 cttacagcga actacttacg aaatcgttcg ccgtaccggg acttgaccta tgagcgcttt 2460 tatggagaag tgccagatgt gtcgaatctg cgagtgtttg gctgtgtggt gtatgtgcgc 2520 gtacctgatt cccaacagtc aaaactagag ccgcggtcaa taaaaggagt gttcgggggc 2580 tacgagcctg acaccaaggc atatcgtgtt gtgttgccct atggcggcca tatcgtgagc 2640 cgcgacgtca agtttcagga gcatgtattc ggtttgaagg aacaagagtc agaccggtac 2700 ctaggtgaag atgatgagga gttaccccct ttgattaacg aagaaggaga agacgaggtg 2760 gaggattcta gtgatcctga gagtgaaggg gacctggtag agtatttaga agaaggcctg 2820 gaagaggagg tggaagtaaa ccaggaagtg aatccggatg ggggagagtc acctggagtt 2880 aatcctcctc aaccgggcct cgaggagcct agtggtcaag gacaacagct acgtcactca 2940 gaacggtcca acaaggggaa accgccagaa cggttgaata tggtggcagt tctggaggag 3000 ccaaggacct acaaggaagc taaacgttct ccagcctggc ctatgtggaa gcaggcgatg 3060 gaccaggaaa tggcttctat gcagttgcac gctgtgtggg agttggacat gccgcctaag 3120 ggagtacgtc cgttaccggt caagtgggtt tataccttga agcgagacga aaagggtgat 3180 attgttcgct ataaggcgcg actggtcgct aaggggttcg tgcaggtgga agggagggac 3240 tatgaggatg tgtttgcccc agtaagcaag cacaccaccc tgcgtgccct gctgtctgtt 3300 gtggcagtgc gtgacctaga gttgcatcag ttggacgtta agacagcgtt tcttaacagc 3360 acgctggatg aggtagttta cgtgcagcaa ccccctggct acgaacaggg agcccccttt 3420 ttggcgtgta agctaggtaa ggctcttcac gggcttaagc aggctccgcg tgcgtggtat 3480 gctcgtttga aaaaggagct ggttgatatg ggctttttaa tttctcaagc tgatcctggt 3540 ctgtttttca aggatgtcca gggagagcgc gtgtacgtgc tagtttatgt ggacgatcaa 3600 ttaattgcgg ccaaggatct agcggttgtt caaagattaa agtcaaaatt aaataagttg 3660 tttgatatcc gagatttagg ggaggctcgg gtatttttgg gcttcgagat tgagcgtgac 3720 catgcgcagt gtagcctaaa attgtcacag catcgttttg ctgtggactt aataaagaag 3780 tacggcatgg ctgacgcaaa tccgcggctg gtgccaatgt ccaagggcac tgttttacgt 3840 gctgaggggg agccgttgga cgtgggggag tttcgttatg gagagctggt aggcagcctg 3900 ttgtacctta tggtgggcac gaggcctgat ttagcttatt ccgtcggggc tctgtcccgt 3960 tatatgtcca agccaacggt acagcattgg gaagctgcga agggtgtgtt gcgatatgtc 4020 gcaggtacaa ccgccaagtg tattttgttt tcagcgaaat ccgcagagcc tctgcatggc 4080 tactgtgatt cggattacgc tagttgtgtc gacacgagac gttctaccac ccgttacatg 4140 tttctaaacg cgggtggtgt gctgagctgg tctagccgtc ttcagccaac ggtggctatg 4200 tcaaccgccg aagtatatgt cgtgtatatg tcgtgagtat atgtcgtgcg gtgctgctac 4260 aaaggaggcc ctgtggtttc gtgttttaag tagtgatttg aagttgggcc tcaccaaggt 4320 tagcatcttg tgtgacaacc aagcagcaat caagatggtt ggtaacccga tcgtctccgc 4380 taggtcgacc gctcggttga cgtcaacgca catagataga cgtgagcatg ctgcgtgagg 4440 cgaagttgta ttcaaatacg ttaagtcggt agatatggtg gccgattgcc tgacgaaggc 4500 gttgcctttg ccttcgtttg agaagtgcgc acgtgcgatg ggactgcgct agagtggtgc 4560 ttgttcttcg ttttacagat ggaggtctgc ccgtggggga gtgttgtgga ttggacgtta 4620 ttccggtcag acctctctcc actatcgtct ttggaattaa ttgtcgtact tacggaactg 4680 tactttggtt cctttaagtg gcggcgggaa gacatattct tcagttgctt gtaacataac 4740 gtgagccgag gcagccgtat agcgtgaggc acggagtaac tcgtagattt acaacattcc 4800 ggccaagaag gatagaagca aggaagttgc tggaaagtag cacaagccag cacaagcaaa 4860 gcatttaagc aaatt 4875 // ID Gypsy3-PP_LTR repbase; DNA; PLN; 552 BP. XX AC scaffold_94; XX DT 03-APR-2008 (Rel. 13.04, Created) DT 03-APR-2008 (Rel. 13.04, Last updated, Version -1) XX DE LTR retrotransposon from moss: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-PP; KW Gypsy3-PP_I; Gypsy3-PP_LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-552 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from moss."; RL Repbase Reports 8(4), 428-428 (2008). XX DR Genome; scaffold_94; Positions 1162463 1161912. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Office of Science Joint Genome Institute. XX SQ Sequence 552 BP; 163 A; 99 C; 99 G; 191 T; 0 other; tgtcacggcc ataatcatat aagctaataa ttacatatag aaataggtag aagtaagtaa 60 aagtagataa aagtaagtta attctataat atttaatata gaagcttcct agaaacttcc 120 tagacgctgc tttgacttca taggtgtctt taattgactt tttggattag aaacgtggtc 180 aacaagttgg ccatgaacca cacatgttgt tagcttgaag atcaagctaa ctatgtggcc 240 cacacgtagg aaaacttgcc ttgtaagtca aggcatgtgt cctacaaagt caacatatat 300 tggaggtcct atagaatgtc gccacatagc ccctagttag atagtatata tagagacaag 360 agtgaaggct tcttcactct tgtcaactcc tttcttgctt ctagtccagg ttcaagagtc 420 tttagtttct tgtcttgtgg caatagccat tccagtttcc ttttaatata cctacttgtt 480 tatattttga cttattatat cgagatagcc ttttggtgta tatttttcct tatcgagtct 540 ttgtccttga ca 552 // ID Copia-2_PR-LTR repbase; DNA; PLN; 215 BP. XX AC AAQX01003180; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-2_PR_; KW Copia-2_PR-I; Copia-2_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-215 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003180; Positions 2078 1864. XX SQ Sequence 215 BP; 64 A; 50 C; 52 G; 49 T; 0 other; tgttgaagtg tcacgttcct agcacggttc acgggagttc ggaccgcagg aacggttcac 60 tttgaaccgt tctctgatta gctgagtaaa cttcggtggt tgtgaggaca ccacaagagg 120 acaacaaggg gggacactag ggagtatcgt aagaaagaca tttaaatcaa actaatctac 180 tcacttcggc atttgcctcc aaccacaaac caaca 215 // ID Sola2-1_EmiHux repbase; DNA; PLN; 7442 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Sola; DNA transposon; Transposable Element; Sola2-1_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 7442 BP; 1560 A; 2160 C; 2438 G; 1284 T; 0 other; gagcgagtga cggataaagt cgtgtgaaag agctgtgaaa gcgaaagtag cgaaattaat 60 tgcccgccgc aggcgaagaa aatttcaggg tttttggtcc cctacgccaa agaaatcgaa 120 gattccgccg gcgggcggga ggacgcgcca acgggcacgc gactcgcgct atgatcgcgc 180 tggtgcttgc gttgctgtgg ccgtcttcat ccgtgtcgta caccgagctg gcgccacagc 240 agtacaacaa cggctcggta gagctgctcc acgggactac tatcatcatc agagggcccg 300 gcaatgtcca cggcggagct ggcggtggcg gtggcggcgg tggttatggc ggcggcggcg 360 gcggaagcgg cggcggcggc ggcggcggtg gcggcggcgg cggcggcggc ggcggcggct 420 cttactggac gggggcgctc gccgctgcca gcttcgcgct gatgcggacg tcacatgtgc 480 aaagtgccaa tggtctccag cgaggcttgc tgaacagctg gaacgcagtc gtgctgggcg 540 ccactctgta cgcctacatg cctacccact acgggcagct gaccaccacc gattggatac 600 cctggtcggc agagtcggcg gcggcagtgg aggagcttgc ggctgctacg ctcgaggaga 660 agtgcgcaag ggcgcggctc acgatcgacg agctgtggct cgaggcggcg gacgcccagg 720 tgcacccacc gcgtgtagaa gacctctcct gtccccgggt cccaactgcg cgccatcttt 780 cgctctagga ggatgcactc ttgcttcgcc aacgtcaaat tgtactcgct gagcacgccc 840 actggctagc cacgtgtctc gagtcggaca tgtgccagcc gtgcgaggga gggggggggg 900 cagggccagg gcgtccgtcg aaggagacta tgcaaaagcg aaaggccgca gatcagctgg 960 cctctcaaca tggacgctcc ttctttcaga acgcgggttt cgcaattcct tcgcggccgc 1020 cgaagcctgc cttgccctcg cagcagcgca ctatcactga accttctgcc tcctcctcta 1080 ccctcggcaa tgaggccgcc gagtcggcta ctcccacctc cggcgccgac gcagaactca 1140 ctggcagcga tgacgcgatg gacggcagtt cctgcgcaga cctgcccgag gctcaggcag 1200 cggaggaagc ggcagaagca gaagcctcag aggccgcaga gaaagcggcc gcggctgttc 1260 gcgctgcgga gcaggcggag tcgagggttg actacgccag tgctcttccg cagggtcgca 1320 tgccggcgca tggcgagccg agctcgacgg gtcgcgaagg tgccttgcgc gtgacagcga 1380 ccccgtacaa tgatggccgg tacgatttca gcggagcata caacatctac gtcagcgtcg 1440 ccgtactcaa aggttctggt ggcagatggg aggcccttaa tcggcagaca acatacaccg 1500 ccacgtctac cgatcctgag gattgccagg ccgaggcact tgcagaggcg cgacgcatcg 1560 cgtggcgcct cttggagcag tccaggcagc agagcgaaaa aaagaaaagg cggcgcggcc 1620 aacagcttcc cgcaccacca gcctccgacc gcagactccg ggagagagga gcggcacagc 1680 cgtcagcaaa gcctacggat gggcgcgcaa gcaacggccg caagaaaggc tcatcctcgc 1740 aggcatcagc cgagtcatca gccggcgcgg cactggccgc tcacagctac ggaaaccctt 1800 cggtcaactc gcagcttttt gtgccactcg cagagaaggc gccttctatg cagctggcaa 1860 tgctccagcg cactcagggc gagcttcggc gcgtccaatt gcagctggcg caggagaaga 1920 cggcgcacga ggcaagcaag gagacaatca gcggcttgaa ggtcgacctc gggcggctcc 1980 aacagtgggc gacctctcag ttggccgtcg atatggacca gctaccgagc ccccgacagc 2040 tcgatgcgct actcggccag ggctacaccg ccacggagcg aggccgcacg atttacaatc 2100 atctcgaccg cgccttcaac gccatccaaa ccatcactgg tggcgacctg aggaagacgg 2160 cagagctcat cgcctttgcg agcaagaaac tggatctcaa tcgcgacgat cacgtggatg 2220 agcggaagca aagggcagtg aagggcatta ttgattcgtt gcgccaattc tttgtaaagg 2280 cgcgaggcat caccggcggg ggacgtcctc ccaaaaagct ctcgcaggct gtccaggcaa 2340 tcgtcacggc gattgcacac gcgcccgagc tgggtggatc gagtctggca gcggtagcga 2400 gcgtgctcga gatgggtggg tcaggtgcga gcaagctctc ggcccgcggg gatgcggcgg 2460 acgcctttat ttccgacggc gactactcga tcctctttga agaccgatcc aaggtgcgtt 2520 cggatgcgta cacagatgag cagctagatt gggtcaagac caacgtctgg ttgagcgacg 2580 actttacgag agagtcggag gcaaagaagg atgagatatt cgatccaaag tctcggaagt 2640 ccaatcgtgc gcaccaccga ctgcggtggc tcgaagttcc cctcatggaa ctctatcaac 2700 gcggcagaga actctaccag gaagaggcgg cgaggagaga gtggaaggtg acgaagatgt 2760 cgtcaacaac gatacgcaat ctacgtccct tttgggtcaa ggatccgacg agagacgtct 2820 gcctctgccg ctatcacctt gagtttgatc ttctcgccaa ggggttcact cgactctgct 2880 ccgccatcaa gtgcccgaac gactgcgata tctgcgaaaa tgcgcccaag ttgacgaccg 2940 ggctcaaact ccgcgccgca ctcacgtgcc cgaggccaga gggggaggag cggtacgacg 3000 accgcgcgtg tgtggacggg gaatgccaaa agtgcaagga gctgcagcta atggcaaata 3060 ttgtttgccc ggctcgacgt gcattgatgg ccgaccatca actcaagtgg gagaagtatg 3120 aaaagaccca catcggacaa gataaggcga cgggggagga ccgatacaaa aatgacttca 3180 tcgagcaggc tagcctagcc tccccccaaa gccccaacgc ccaacgccat cctaacgtct 3240 gacgccgtcc ttcggcctgt agtccggcgt cggggaagag ctgttccaag agattggcga 3300 atgcctcaag acgttcaacc cgcatcacga tcttgccaag cgacaggtgt ctcacacgca 3360 atccccgcct cccctcgcgc gttcgcctcc gctcgcgcgt cagcctcctc ccggccagca 3420 cacaacattg acacaccgtg ccgtctgtgc tcaggacgac gactggtcgg cactcaagac 3480 tgactttccg aggggcagtt tcgtctcggt gcaggacttt tctgagaatc atcaccataa 3540 agtgcgcaac gagccccagg ccaagtatta ccagtcggtc gacagcacgc tctacatggt 3600 tgtggtccga taccacctcg atgacgcgac caagctacca gacgaggtga gagacgagct 3660 tcgcgccact tatgcgagtg tcgatcggcc gccgatcatc gtcgagaccc tggcctttgt 3720 gagcgcagat cgaaagcacg acaacgcatt tgtgcgtcac gtgaacgatc gctacgtcgt 3780 gccatacatg cagtcgatcg gcgatttcag tacgcactat gctcgatcgg atggttgcaa 3840 atcgcagttc aagtgcgcga tgcactttga ttgggtcagt cgccgccagt ttgaaacggg 3900 ggtgcgaacg gactggtcct tcttttgcag ctgtcacggc aagtgcgact gcgatccgga 3960 gggcgggtcg atcaagtcag cggcggcgaa ctgggagcgc catggcgacc tcgagggcat 4020 gcgggttcaa gccaagctcc cggacgcggc cagctttgtc aagtgggcca acgagggcag 4080 tgccgccggc tcgccacacg gatatcacgc cggcctcacc gaacctaagg attccctgtt 4140 gaccaagctg cgatggggcc gaaaaaatgc aatctggcgg cggcaattca tcaacgtgcc 4200 gaccaccggc ccacaggcag tctcccgcat ctactccgag tgcacgctcg acggctccgc 4260 tcgcatgcac tcttttgttg acgttggtac accgggcacc atcttgtggc gtgagcgttc 4320 gtgccatcag tgcgagaact gctgggctgg cagagcatcg accgggtgct ccgacgagaa 4380 aaggtttggg cgggcggtcc gcatgccgat catccaccag aagaaaccgg agagcagcct 4440 cacccgaacg ctgcggagtg tgcagtcaaa gccgctgcct gagatgatca aagaggtaac 4500 cgatggtcag tatgtttgcg tcgttgtgaa ggacaacccg cacgagccgt ggatgcttgg 4560 ccgtgccggc ggcggcgtgg agaaggcgac ggccaatgac gtgacggagg cggcgaagct 4620 cggctttact atcaaaacgg gggcggaggt gctgcgactc atcaaatttg agccatttga 4680 gcttggctcg cgacgataca ttgagaccaa ggtgccgttg gtggtgccag cgacggcctt 4740 gcggcgagga gagctcaaac caaacaacgt gaacgagctg cgcaaatcgg tcaggatcaa 4800 aaatcaagcc agccgctatg gtgagtcgac ctttgaactc aaagaagaag atctacgtgc 4860 aatcgtcgcg atccttggga gcgagattgg agactttaaa gtcgacaagc ttctcgcaca 4920 ccgagtcgtc gtccagaggg gcaagccggt ggaccagttc caagtcaagt ggcagggatg 4980 ggagcgtgag gaggacttga cttgggagcc gctaagcgcc tttggcggcg atgagacact 5040 gctcgccgag gcggccgacg tgaaagccaa agctgctgca gcagcccagg ctgccacgaa 5100 gcagcgggca gcgacggcgc agcgtgaggc agagcaggag agggcggcgg tagaagcggc 5160 caaggcggcg gccgaggcgg cggcagcgga gcacgcaaag cgagagcaag aggcggtgga 5220 gcaagcggca gcggcggaga aagccgaggc agcggcggcg gcagcggcgg cggcggaggc 5280 tgcggcggcg aaggcggcgg cggcagaggc ggcggcggca gaggcggcgg cggatgaggt 5340 ggcgtcggca gagcaggcgg cgcgggaggg gacgtcaaag gcaggggcca ccaaccgcgc 5400 tctgactcag gcaccgatat cgatgcttat ggcagagtcg ggggcggagc gtgacaccgc 5460 agccgccgcg gcgagctcta ctgcatctcg tgcggccgag gaggctaagc tatcgcgtgc 5520 tcgggcggag gaggcggagg aggctgccgc caaagctgct gccgcggttg cgcgtgcaga 5580 gcaggccagt cgtcagatca cagttcgtac gggttacttc gggtcgctca aggagatgct 5640 gtcgctggcg gggcgtgagg tcgtgccggt cgcaggcgac ggcaactgcg gcttctacgc 5700 atttttgggg tgcgaagacg ccattgagca ctgccggggc cggacgcggg caccgactgc 5760 gcgtgactat gccgctcagc agaatctacg cgaggaatgc gtcaaatggc tgcaggatcg 5820 cccgcagcta acagcatggc atgcgggcat ggacgccgtc tccaactctc ggagacaatc 5880 atcgtggagc gacgcggcaa tcaaaaattt ggagggcggc aagcagagca catctgatag 5940 catgggagtg tacgcgaacg aggctgctct ccgcgcgatg gcggggcttc ggaaggagcc 6000 ccttgtggtt gttgattcca aagctgggcc gtctctgagc aagcaggttc gcaatcgccc 6060 gccagaccaa gtggcggtgt atgaaactca tgcagggcca gaggataagc ggcgctggtt 6120 tgcctctgtg atgaaatgga tgtcatgggc gaacgacatt gcgccggtgc tgcagcgtcg 6180 cctcgagggc aaccagctgg aggacgaccc caagtatcgc gtgattgtcc acaatggcga 6240 gccggcatcg agccgcggcg gccactttga cgcaacgcgc gtggtagtgt agtagcgtgt 6300 catagcgtgc gtgcgtgtgt aaggaatgga ccgcgtgttt tcttttattt tcctcgacgg 6360 gcgctcgacg cgccgtatgg agcacgcgcg cgcccgctca cgctgcccag catgcctgca 6420 gcatccaaac gaggcgcacg gcgtcgctca gccgtgtcca cgcggcttcg ctcctgtcct 6480 aaccggcgcc atctgggcgg ctgctgcgga gctgctgccg gcggtgcgac aactggccga 6540 cagatacgac gctcagggca cccgtcggcg atccaccggg aaaggaacga aggcgccgct 6600 gtcggcgatt caccgccgct cgttcccgtc tcttaaagct ggctgcaccg tcgatgcgca 6660 catcgaggcg ctcgtggacg agggagacgt cgcctcctct ttcgtaccgg ggcactgttc 6720 gcgccggaag gcaccgcgca ctgccaagta cattagcctt catctctcct accgccggcc 6780 gggagtgcag ccttcgccat cgctgggtga gatggtcctc gactttggca cctgcgaagt 6840 aatgaacaac atgcagtaca tcatatggcg ctatgacagc cctgcgatgg gcgacctcga 6900 cgcagacgag gcggagctca tctgcgcggc gcagatcgcc gactttctct ctctccctgc 6960 gcgagtggtt gcgccacctt ggatgaggca tatgggctgg gcaggggagg tggtagagga 7020 ggtcgactga gggcgcgagg ccgccaatcg tcacagtctg ctgctgactg tcggtcactg 7080 actggttgcg cattgcgctg gccgcgcagc ggcctttaga aaattttggc cgcaggccta 7140 ggttttgaaa gatcaagaga ataagcgcgg gtgaggcttt gagaagctgc cgtttgcggc 7200 ttcctaagtc aatttttcga gaggaacgtt ttggctgagc tagaacttct ccaaagtcgc 7260 gcgatcatcg agttttgagt caataattat gaaagggaag ggagagggag agttctagct 7320 cagccaatcg attcagcgtg ctctgaaacg cccaaaaccg tcgagttttt cgccgtggtc 7380 caaacagaga gcttaatatt ttgattttct tggccacggc cacgattacc cgtcactcgc 7440 tc 7442 // ID Copia-13_PIT-I repbase; DNA; PLN; 4505 BP. XX AC AATU01002822; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-13_PIT_; KW Copia-13_PIT-LTR; Copia-13_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4505 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002822; Positions 90980 95484. XX CC Positions [1896-2405] - Integrase core CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 15..3746 FT /product="Copia-13_PIT-I_1p" FT /translation="MSPSNDTVAAESARGHPDADVDRERTDSSKYGGDDEV FT KETRDPQQKLVDLLTGLTERKERLEESQKRQEEQQRIAGTESSVFESAIGL FT GRAMDREALDRTPTRNSPAMSPATYFGVKQRGYGFKNAAANVEMAQAPQPA FT LPQHYVPPRMYQAHVQPPTMPHGMPAPAQGFPRVPDTRQRKLGIRHFDGKE FT LYQGLGSGFLSWGKRFVRQILFAERASGFTWTEEVKVDVLGHHLTGMAERY FT YNQQVEGWWEEEPTLEHAMQRLLHTFATKITPAQSMKMFTAPKSSKRSWTE FT HYLYLVAVSEACGGADNLVLDNIVHYADASMRVSMLSRLKLGRTDYLRQAE FT ELAHFAQSTEIELRGKNLGRDVVNNVHDDRIDDRKCFKCGKVGHLKALCPN FT NKRRGTERGARADFVLAVDNSVNEKGVWILDTGSSRHLVNDEDLLEDPEDF FT ESECVAADGGALRVTKRGSIVLETMAMGKKTTVRLLDVQYAENLEQNIISY FT GMLEKKGYKIDYRGQHRVVAAMTGGPAVFDVEKVNNVLVVRAQVQGRKRSA FT GDVLMSVLAPSEQNEEVGQDVQRGTLMHFHRRLGHLNYDTILKMAKNPASG FT IFLTDEKRANCLACAQGKQTKNKQSRKDTGANAPIDVIGGVICSDLKGPMT FT PRDRLGNRYMVNFVDHRTNYCRIFLARTKDVAAQKFKHFMAFFERQFNCRI FT HVLRTDGGGEYQTLDLFCKETGIARQVSEPRNQASNGKAERMHRTIMNMVR FT SMVFACGLPLSFWGDAAEYAAYILNRSPSKANPGSKSPLQMLTKSTPDLSD FT IVVFGSPCTVHTDAKNKSLGERGKAAIIVGKSDEMKGYRVYIPKDKVVVVT FT QHVRNVETLTDVQNEKLRRVHLEESEETNEEDRNANAASTGAGSKGKKKAK FT RKSKGGWTRERHRTRSTTQKAAGAGTTSDDNSQDGAIHDVVNSVREADPKN FT YGQAMKSGLKDAWVIAMVEELRALEDNGVWTVEVPPTGSHVLHTKWVFKTK FT TDADGAIERFKARLVACGNEQLFGIDYNLTFAAVMELSTVKIVLVFARRWR FT VPARHGDIPNAYVKADKEQHLEIYLAIPKGMQISEAVLRALGVDTSSKLVL FT RLKKSLYGLKQAGRLWSKLLHAKLEEIGFTRCVTDMCLYYKKHGSDMTLVG FT VYVDDLLVTASKPELVEDCFQAMSVLSIKDLGVVRKFLGMRVELHESDGYS FT LDQQAAIEELLEQYGLADANGVRAPIGEECNEAE" XX SQ Sequence 4505 BP; 1215 A; 1059 C; 1402 G; 829 T; 0 other; tctactaata ggttatgagc ccaagcaacg atactgtcgc cgcggagtca gcccgcgggc 60 atccggacgc agatgtcgat cgcgaaagga ccgacagcag caagtacgga ggcgacgacg 120 aagtcaagga gacgagggac ccacagcaga agctggtgga tctcctcacc ggcctcacag 180 agcgcaagga gcgcctagag gagtcgcaga agcgacagga ggagcagcag cggatcgctg 240 gaacggagtc aagtgtattc gagtcggcca taggcctagg aagggccatg gaccgagaag 300 cactggatag gacgccaaca aggaattccc cggcaatgtc tccagccacg tacttcggtg 360 tgaagcagcg cggctacggg ttcaagaacg cagcggctaa cgtggagatg gcacaagctc 420 ctcagccagc gctgccacag cattacgtgc ccccgcgcat gtaccaggcg cacgttcagc 480 cgccaaccat gccgcacggc atgccggctc cagctcaggg ttttcctcgt gtgccggata 540 cgcgccaacg gaagcttggc atccgtcact tcgacggcaa ggagctgtat caaggcctcg 600 gcagtggttt tctgtcttgg ggcaaacggt tcgtgcgtca gatactattt gcggaacgcg 660 caagtggctt cacgtggaca gaggaagtaa aggtggatgt cctcggtcat caccttaccg 720 gcatggctga gagatactac aaccagcagg ttgaggggtg gtgggaagag gagccgacgt 780 tggagcacgc catgcagcgg ttgctgcaca cgttcgcgac caagataacg cccgcccaga 840 gcatgaagat gtttacagcg ccaaagagct ccaagcgcag ctggactgaa cactatctct 900 acctggtggc tgtgagtgag gcgtgtggag gcgccgacaa cctcgtcttg gacaacatcg 960 tccactacgc ggacgcgtcg atgagagtgt cgatgctgtc cagactgaaa cttggccgga 1020 cggattacct gcggcaagcg gaggagctgg cccactttgc acagtccacg gagatcgagc 1080 tacgaggtaa gaacctggga cgtgacgttg tgaacaacgt acacgatgat cgtatagacg 1140 acaggaagtg ttttaaatgc ggaaaggttg ggcacttaaa ggcattgtgc ccgaacaaca 1200 aacgaagagg gactgagcga ggcgccagag cggattttgt cctggcagtg gataactcag 1260 tcaatgaaaa aggtgtatgg atcctcgaca ctggatcaag tcggcacctc gttaacgacg 1320 aggacttgct tgaagaccca gaggacttcg agagcgagtg tgttgctgcc gacggaggag 1380 ctctgagggt aaccaagcgt ggcagcatag tgctggaaac catggctatg ggaaagaaaa 1440 ctacggtgcg actactggat gttcagtacg cagagaactt ggagcagaac attatctcct 1500 acggaatgct agagaagaaa ggctacaaga ttgactaccg aggacaacat cgtgtagttg 1560 ctgcaatgac tggaggacca gcagtgttcg acgtagagaa agtcaacaac gtgttggtgg 1620 tgcgcgcgca agtacagggg cgtaaaagaa gcgccggcga cgtactcatg tcggtactgg 1680 cgccaagcga acagaatgag gaggtaggac aagacgtaca gaggggcacg ctgatgcact 1740 ttcaccgccg cctaggacat ctgaactacg atactatcct caagatggcc aagaatcctg 1800 cgtctggaat ctttctcacg gatgagaagc gagcgaactg cttggcctgc gcacaaggaa 1860 agcaaacgaa gaacaaacag tccagaaagg acacaggagc caacgcacct atcgacgtca 1920 ttggcggtgt tatatgctca gatctcaagg gaccaatgac gccaagagac agactcggca 1980 acaggtacat ggtgaacttc gtcgatcaca ggacgaacta ttgcaggatc ttcttggcac 2040 ggacgaagga cgttgctgct cagaagttta aacacttcat ggcgttcttt gagcgccagt 2100 ttaactgtcg tatccatgtg ctgcggacgg atggaggagg tgaataccag actctagatt 2160 tgttttgtaa agaaactggc attgcgcggc aagtaagcga gcccaggaat caagccagca 2220 acggaaaagc agaacgaatg caccgcacca ttatgaacat ggtgagaagc atggtgttcg 2280 cgtgtggtct gccactcagc ttctggggag acgctgcaga gtacgcggcg tacatactga 2340 ataggagccc gagtaaggca aaccccgggt ccaagtcgcc gttgcagatg ctcacgaaga 2400 gcacccccga cctcagcgac atcgtggtgt ttgggtctcc gtgcacggta cacacagacg 2460 ccaagaacaa gtcgctagga gaacgcggta aagctgcgat aatcgttggt aaaagcgatg 2520 agatgaaggg gtacagagtc tacatcccta aggacaaagt ggtcgtggtg acccagcacg 2580 tacggaatgt ggagacgctc acggacgtac agaacgagaa gctgaggcgc gtacacctcg 2640 aggagtcgga agagacaaac gaggaggacc gcaatgcgaa tgctgccagt acgggagcgg 2700 gatcgaaagg gaaaaagaaa gccaaaagga agtccaaggg cggttggaca cgggaaaggc 2760 atcggacgag gtcgactact caaaaggctg ctggagcagg aacgactagt gacgataata 2820 gtcaggatgg ggcgatacac gacgtggtaa atagcgtgcg tgaggcggac cccaagaact 2880 atggacaagc aatgaagagt gggctcaagg acgcgtgggt aattgctatg gtagaagagc 2940 tgcgagctct tgaagataac ggagtgtgga cagtcgaggt accgccaact ggcagccacg 3000 tactgcacac taaatgggtc tttaagacca agacggacgc cgacggcgcc atcgagcggt 3060 tcaaagctcg gttggttgct tgcggaaacg aacagctctt tggcattgat tacaacctca 3120 cgtttgcggc ggtaatggag ctgagcaccg taaagatagt gctggtgttt gctcggcgct 3180 ggcgtgtgcc tgcccgacac ggggatatac caaacgcgta cgtcaaggcg gacaaagagc 3240 aacatttgga gatttatctg gctataccaa agggcatgca aatatctgag gcggtgctac 3300 gcgctctcgg cgtggacacc agcagcaagc tggtgctgcg gctcaagaag tcgctgtatg 3360 gtttgaagca agcggggcgc ttgtggagca agctactaca cgctaagttg gaggagatcg 3420 gtttcactag gtgcgttacc gacatgtgct tgtactacaa gaagcacggc agcgacatga 3480 ctctggtagg agtgtatgtg gatgaccttc tagtgacggc ctccaaacca gagctagtcg 3540 aagattgttt tcaagcgatg agtgttttat ccattaagga tctgggtgtg gtacgaaagt 3600 tcttgggcat gcgtgtagag cttcatgaat cggacggtta ctcgttggat cagcaagctg 3660 cgattgaaga gctactggag cagtacgggc tcgcggacgc aaacggagta cgcgcaccaa 3720 tcggagaaga atgtaacgaa gccgaataag gagcaccgca gctgttgatg cagtcaggag 3780 ggcgcggaga gccaacaaaa cgaagtttcc agtctctcgt cggcagcctg ctatggatag 3840 ctcgctgtac gagaccagac attagctttg cggtccacaa ggccacgaga cgcacccatc 3900 agcctaccgt aaacgactgg aagctcgcga agcggatcgc taggtacttg aagcagacaa 3960 aggaactaaa ggtcaaaata cgagtagacg cagccagtgg aagacggatc tgtctggaaa 4020 gctggagtga tgcggatttc gcggcggata aggccgacag gaagtcggtg accggcggag 4080 tgatcactct cgacggggcc atcgtgcagt ggatatgtaa gaaatagact ggttctgtga 4140 tatccacgat ggaagcagaa tttacgtcag catcaaatgt cggacgtgag ctgcttggac 4200 tgcgagaact cgttagggag ctggagtttg cggtggtaga gccaatgacc atgtatatgg 4260 acaaccaggc cgccatcagg aagctagaga ccgaagacag tatgtccagt gcaaagcacg 4320 tagacatccg agtcaagttc atctgcgatt ttgcacggcg aggtgtgatc aaaccagaat 4380 atgtggagtc acgactaatg aaggccgacc ttctcacgaa ggcgcttccg gcagccagat 4440 tggacgagct tcggaagatt ttcatgttgg agtagtagct ggcgagcgcg acgagcgagg 4500 aggag 4505 // ID Gypsy-17_PIT-LTR repbase; DNA; PLN; 383 BP. XX AC AATU01002779; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PIT_; KW Gypsy-17_PIT-I; Gypsy-17_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-383 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002779; Positions 24509 24127. XX SQ Sequence 383 BP; 98 A; 98 C; 97 G; 90 T; 0 other; tgtcacggta tacggctgga tgagggactc gaccttctcg ccgaatgtat tcagaagctc 60 aacgcgtttc agatgaagcg caccacgtct aaccaactgg gtctttcgcc tccgacgtcg 120 acgttcccga cataaaaagg aacgcctgtc gacggctgtt ctcaagatct gcagtggacc 180 gccacgtagg aggatctgta gagcggtagg gagctgctct ctctcgtgga agtcgaggag 240 agcagctcag tcgtgttttt cctccatacc tcacaagtaa ctgagaagac aagcaataca 300 tttattttac gtttatttcg ttaaaagttt ctacggtcgg tctgcaagat acacgacccc 360 gatcaaggag gaaaaccgcg aca 383 // ID RTEX-3_VC repbase; DNA; PLN; 4991 BP. XX AC . XX DT 26-FEB-2010 (Rel. 15.02, Created) DT 26-FEB-2010 (Rel. 15.02, Last updated, Version 1) XX DE A family of RTEX non-LTR retrotransposons - a consensus sequence. XX KW RTEX; Non-LTR Retrotransposon; Transposable Element; RTEX-3_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4991 RA Kapitonov V.V. and Jurka J.; RT "First examples of RTEX non-LTR retrotransposons found outside RT metazoans."; RL Repbase Reports 10(2), 141-141 (2010). XX DR [1] (Consensus) XX CC RTEX-3_VC belongs to the RTEX clade of non-LTR retrotransposons. CC The consensus sequence is less than 1% divergent from several CC copies of RTEX-3_VC. The 3' terminus is composed of the (TGACAA)n CC microsatellite. The 5'-terminus in not reconstructed due to CC truncations. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user CC community. XX FH Key Location/Qualifiers FT CDS 25..1068 FT /product="RTEX-3_VC_1p" FT /note="ORF1." FT /translation="FTIVHAYHTTLATSQLSPSHWLCQRSRICRTAGISPQ FT SPSKRVLRSGKEYPTPSAAALEEAAAGDSMTRSTQKEPSLDEIYKLLQTHA FT TQTKASFDSLHSKTDALAARVDSLEKNIPEIITKKVETEMKQFEVRAAQFI FT IETVQSQLAGAPTFATDRTGSKQRRNLTGKSAYYDSGSLIAFGVPALATAK FT QAAEAITQVVSDASGGSLQASFLSVEVRTEKPRPNQAAPTYNITIGVTPRV FT RGMLFRHSQALKAIGITFRDDLTPAGRQLKQARNAQFLRLRDEGRKPKWLG FT PYIEYQRTDGMYYMVSKYDVSDVPPPPPQPPAGNGAAAGTSDGRVTTEGAG FT EGSAA" FT CDS 1078..4935 FT /product="RTEX-3_VC_2p" FT /note="composed of the APE, RT, and CCHC domains." FT /translation="MSREAKDIRVLLWNVWGLSVAKLTDPSFLRIAQDHDV FT LVFTETHCSAQAGKPAKALALPGFQLHVAERACRGGAGPQTGRLHGGVSVY FT IRDAIARDVTLLRVDTDIAGCESIWLRLGGKQTGQDSTLVGACYVSPRASV FT VHHASLRAHESDGQAADEVFDHLATVVGALRQSGERILLLGDWNARVGGLP FT NHLSDIPDLDYLDDLGEEVGCPFVDGEAYRALLGVPRRSLDQEHNAFGRKL FT LELCRVSEVVILNGRAPGDTEGRLTYESSRGGGSMIDLVLASPSLYPCVRS FT FRVLPQQSFYREERRLSDHNPVSLHLASVWRPDRPPTRKPKPTFLVSEAHR FT YTDMFYNPEAPPVVGVRAVVDSLRAGQIGVTQAVDTIERILLGCFGDAFRP FT GPVSNGKAAWWNDECAAAKQAMLQYRSDVMKWGCAAPAMGHTSFQELRRQF FT NRAKRNARRDHRLRALELFIATCKRDAKTLWQRLNGKPASRCNVEDVSEWT FT DYFDRLYNASASFDEVQEARVCAILNCINLGAGSQVGAAWRDSEPVHARRS FT MADTMNGPFTLEEVEAALSSLSNGRSPGLGMVPAECYKYAKRIPREGDEDR FT VSVNVIAPAIRDLFQHIWDTGDVPDQFCVASLSPLFKKGDPRVKDNYRGLA FT VGCAIAKCYATVLDRRLAAFGDKDGVRCRFQAGSRQKRSTVHQLFVVRHLK FT SRYERPGSNQALYACQVDFEKAFDRVPRASLWQRLEERGVHGPMLAALKAS FT YERVLQRVKVNGRLGSIFASLQGVKQGCPMSPNLFGFFIEVIADYLEARDG FT MDEWFNTRAHECPVINDRRLPLLFYADDLTLFATSLARLQFSLKLLIEFCA FT AFGMRCNVRKCEALVVAASVDVVKRAFEGVRLMLPLRTDGSLWHPPMVGSL FT LVPSPINWCGRVRYLGLYWGPASPFASCVNELLEAGRRAMFGLSNRLDENR FT VWAPAVRLQAFDTQVRSVLCYGAEVWGPDRIVSVLRLGKGVLPAGKSYFDL FT ALEDGMVQVQRDFCLRCAGLKQVPYKLLYRELSQLPLQYFWLRLALCFWNK FT IVKSRGSVYHDVLVDDLRLALLSDLKVDCWSSKVLIILRWLGHEWPACDSV FT SQKVDVYSSQLIRVGEVLERLSAFLLSDWDQFSQGGDPRVFQGKGVSLCRY FT HNWMGSPSPAREGSDPTGYLRVYLPVNQLRMVAKFRLCCWPLEVNKGHHRP FT RECRTCQVCTSGKVEDEYHVLMECEAYTELRNRFLINVEDTDMRKVFLNTN FT PRKIATFLTEVFDERQQRALEPHGS" XX SQ Sequence 4991 BP; 970 A; 1291 C; 1504 G; 1226 T; 0 other; atagtttaca atagtttaca atagtttaca atagttcacg cctaccacac caccctggca 60 acatcacagc taagcccctc gcattggctt tgccagcgat ccagaatctg tagaacagct 120 ggcattagcc cacaaagccc gtctaagcgg gttctgaggt ccggcaagga gtaccctacg 180 ccttcggccg ctgcccttga ggaggcggca gcaggcgact ccatgacgcg atccactcag 240 aaagaaccat ctttagatga gatttacaag ctgcttcaga cccatgctac acagaccaag 300 gcgtccttcg actccttgca tagcaagaca gatgcgctgg ctgctcgtgt tgactcgctg 360 gaaaagaata ttccggaaat aattaccaaa aaggtggaga ccgaaatgaa gcagttcgaa 420 gttcgggccg cgcagttcat catcgaaact gtgcagtctc agctcgcggg ggcccctacg 480 tttgcgaccg accgcaccgg gtctaaacag cgtaggaact tgaccggcaa atctgcctac 540 tacgattccg gctccctgat cgcgtttggc gtcccggctc tcgcgaccgc taagcaagca 600 gcggaagcca tcacccaagt cgtctccgat gccagtggag gaagcctcca ggcctccttc 660 ctcagcgtcg aagtacgcac tgagaagcca cgacccaacc aggcggcccc aacatacaac 720 atcaccatcg gcgtcacccc ccgtgtccgt ggtatgcttt tccgacacag ccaggccctt 780 aaggccatcg gcatcacctt ccgggatgac ctcaccccgg caggtcgtca gctcaagcag 840 gctcggaacg cgcagttcct gcggctgcgt gacgagggcc gcaaacccaa gtggctgggc 900 ccgtacatcg agtaccagcg caccgacggc atgtactaca tggtctccaa gtacgacgtg 960 tccgacgttc cgcccccccc gccccagccc ccggccggga acggggctgc ggcgggcaca 1020 agcgatggac gcgtgaccac agagggtgct ggcgagggga gcgccgccta gagtgctatg 1080 agtcgtgagg ctaaagacat cagggtcttg ctttggaacg tgtggggttt gtcggtagct 1140 aagctcaccg acccatcttt cctccgcatt gcccaggacc acgatgtgct agtatttacg 1200 gaaacacact gttcggcgca ggccgggaag ccggccaagg ccctggccct gccagggttt 1260 caactgcatg tagctgagcg agcctgtaga ggcggagccg ggccccagac gggccggctg 1320 cacgggggtg tgtctgttta tatccgggac gcgattgccc gggatgtcac tttgttgagg 1380 gttgacacgg atattgcggg ctgcgagtct atttggttgc gtttgggcgg caagcaaaca 1440 ggtcaggata gcaccctggt gggtgcatgc tacgtctccc ccagggcgtc ggtagtacac 1500 cacgcgtccc tgagggcaca cgagtctgac ggacaagcag cggacgaagt gtttgatcat 1560 ctggccaccg tcgtgggcgc cctccgccag tcgggtgaga ggatcctgct tctgggggat 1620 tggaacgcgc gcgtgggggg gctgcccaac cacctctccg acatcccgga cctagactat 1680 cttgacgatt taggagagga ggtcgggtgc ccttttgtgg acggcgaggc atacagagca 1740 ctgctgggtg tgccccgccg gtcgctagat caggagcata atgcgtttgg acgtaaactg 1800 ctcgagttgt gccgggtttc agaggttgtc attctcaatg ggcgggcacc gggtgacact 1860 gagggcaggc tcacatacga gtccagccgg gggggaggca gcatgattga ccttgtgctt 1920 gcgtcccctt ctttgtaccc gtgcgtgcgt tccttccgtg tcctgccaca gcaatctttt 1980 taccgtgaag aacgccgctt gagtgatcat aaccccgtgt cccttcacct cgcgtcggtt 2040 tggaggccgg accggccacc cacgcgtaaa cccaagccga cgtttcttgt ctctgaggcg 2100 cacaggtaca cagacatgtt ctacaacccg gaggcccccc ctgtggttgg tgtccgggcg 2160 gttgtggatt ccctgcgtgc tggccagatt ggtgtcaccc aggcggtgga cactatcgaa 2220 cggattttgc tgggttgctt cggtgatgcc ttcaggcccg ggccggtttc taacggcaag 2280 gcggcgtggt ggaatgatga gtgtgctgcg gctaagcagg ccatgttgca gtatcggtct 2340 gatgtgatga agtgggggtg tgctgccccg gctatggggc atacgagttt tcaagagtta 2400 cgtcgtcagt ttaatcgtgc taagcgtaac gcgcgacggg atcaccggct gcgagccttg 2460 gagttattca tagctacatg caaacgggat gcgaagaccc tatggcaacg tctgaacggt 2520 aagccagcgt ccagatgcaa tgtggaagac gtgtcggagt ggacggacta cttcgatcgc 2580 ctttataatg cctcagcctc cttcgatgag gtgcaggagg cccgtgtctg tgccattctc 2640 aactgtatca atctcggtgc gggctcccaa gtcggggcgg cgtggcgtga ttccgaaccg 2700 gtgcatgcta gacggtctat ggccgacact atgaatggtc cgttcactct tgaagaggtt 2760 gaggcggctt tgtcgtccct gtctaatggg cgttccccgg gtctgggtat ggttccggcc 2820 gagtgctaca agtatgccaa gcgaatccct cgtgaaggtg acgaggacag ggtgtctgtc 2880 aatgttattg cccctgcgat tcgagacctt ttccagcaca tttgggatac aggggatgtg 2940 cctgaccagt tttgcgtggc gtctctcagt ccgttattta agaaaggcga ccccagggtc 3000 aaggacaact acaggggtct agctgtggga tgcgccattg ccaaatgcta tgccacggtt 3060 ctcgacaggc ggctggcagc tttcggggat aaagatggtg tccggtgccg ttttcaggct 3120 gggtcccgtc aaaagcgcag tacagttcat cagttgttcg ttgttcgtca tcttaaaagt 3180 cgttatgagc ggcccggcag caatcaggcc ctgtatgcgt gtcaggtgga ttttgagaaa 3240 gcctttgata gagtgccccg ggcaagcctg tggcagcgtc ttgaggagag gggtgtgcat 3300 ggacccatgt tggcggccct taaagccagc tacgaacgtg ttctccaacg ggtcaaggtt 3360 aacggtcgcc tagggtccat ctttgcctct ctgcagggcg tgaagcaggg gtgtcccatg 3420 agtcccaatt tgttcgggtt cttcattgag gttattgccg actaccttga agcgagggat 3480 ggtatggacg aatggttcaa cacacgtgca cacgaatgtc ctgtcattaa tgatcgtcgg 3540 ttgcctctgt tgttctatgc agacgacctt actttgttcg cgacctcgtt ggcacgcctc 3600 cagttctcgc ttaagctgct tattgagttc tgtgctgctt ttggtatgcg ctgcaacgtt 3660 cggaaatgtg aggcccttgt tgtggctgct tccgttgatg tcgttaagag ggcgtttgag 3720 ggggtgaggc tcatgcttcc tctccgtact gatgggtcgc tttggcaccc acccatggtt 3780 ggtagtttac ttgttcctag tcctattaac tggtgtggtc gcgttaggta cttgggtctc 3840 tattggggcc ctgcgtcccc gtttgcgagt tgtgtcaacg aacttttgga agcagggcga 3900 cgggctatgt tcggtcttag taatcggttg gatgagaaca gggtgtgggc tcctgccgtt 3960 cggcttcaag cgttcgacac ccaggtccgt tcggttctct gttatggtgc tgaggtctgg 4020 ggtcctgata ggattgtctc cgtcctgcgg ttaggtaaag gtgttttacc cgctggtaag 4080 tcatattttg atttggcttt ggaagatggt atggtccagg tccagcgtga cttctgttta 4140 cgttgtgctg ggctcaagca ggtaccttac aagctgttgt acagggagct gtctcagttg 4200 cctttgcagt acttttggtt acgccttgcg ttgtgtttct ggaataagat agtcaagtcc 4260 cgtgggtcgg tctatcatga cgtgttagta gatgatctcc gtctggctct tctgtctgat 4320 ctcaaagtgg attgctggtc gtctaaagtg ctcatcattt tgcgttggtt gggccatgag 4380 tggccggcgt gtgactccgt ttctcagaag gtagatgtat actcgtctca gttgattcga 4440 gtgggtgagg ttctggagag gttatctgcg ttccttttaa gtgactggga tcagttcagc 4500 caagggggtg atccgcgtgt gttccaaggt aaaggggttt cgctttgcag gtatcataac 4560 tggatgggct ccccttcacc agcaagagag ggctccgatc ccacaggcta tttgcgtgtt 4620 tatttgccgg tcaaccagtt gcgtatggtt gccaaattcc gtctttgttg ttggcctttg 4680 gaggtcaaca aaggacacca taggccgaga gagtgccgta cgtgtcaggt ctgtacgtcg 4740 ggtaaggttg aggatgaata tcatgtgctc atggagtgtg aggcgtatac tgagttgcgt 4800 aataggtttc tgattaacgt tgaagatact gatatgcgca aggtatttct taataccaat 4860 ccgaggaaaa tcgctacttt ccttactgag gtttttgatg agcgtcaaca gcgtgctctg 4920 gagcctcacg gctcgtgagg gcacccgccg cgtcggcggc ggaaatactg taaccacaat 4980 gacaatgaca a 4991 // ID Gypsy-8_PR-I repbase; DNA; PLN; 6301 BP. XX AC AAQX01000136; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PR_; KW Gypsy-8_PR-LTR; Gypsy-8_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6301 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01000136; Positions 13087 6787. XX CC Positions [5140-5628] - Integrase core CC 'CATTG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1352..2608 FT /product="Gypsy-8_PR-I_3p" FT /translation="MTSLNPGGWSADRLTQSVVEMAQKQQALIDVLTSQRK FT EVKVEGISLPRFYGNMGDSVELYFDQVIHYFEAKNINWQDENQSKRIIAMM FT TANFRGNAAAWYMLCRDSISDVQDLIQKLTKEFVPPDLQERLRDRLYSLKQ FT KRCSSLEDYISQFRVAIMQVKDMSELDKITYFIRGLVSPTKEEVQYRRCTT FT VSEALSIALEYDRSHFRAGPFQKNRWTPPRSFGRSNSTSFARSNTAPQRPA FT ENEPEPMEIDTGHVHNPRRDNYRRPVQNNNRNSGNPKKCRYCKNPGHTIEQ FT CFKLQNRQYHGANNSYQSNTKRGLFAVHTLATEKPKSVEVVEINDLNAATI FT QSLPAPNELIRKPGLCEGKRVTIMLDTGATCNVIRPGLVDTIPDTMISRVT FT LFDGSTTKKRAVHKGKVRMVIDSET" FT CDS join(2629..3828,3832..6300) FT /product="Gypsy-8_PR-I_1p" FT /translation="MSPEHDVIFGKPWFTKYQPIIDWRTHHLQFKPQGMKP FT VLRKVEVSGAEFKAKAKRHDYDEIYRVKITPAQPVTEEPQEIVPLLDEFAD FT VFPDVLPDGLPPHRRVEFELNMKSDAMPSTRAPFRLSKTEQDALDLFVEEK FT LKKGWIELSDSPWVSNIFGIPKKDPKSGKQLSRAECLRSGNATLPIRWVID FT YRWLNSQTIIARIPLPRVDETFDKMYGCIIFSVLDLAQGYHQMRIALKSRQ FT YTAFRTHSETCQWCVAPMGLAGMPGVWSRLMRVLLGKYPFIVVYLDDICVF FT SKNMKEHLQHLRTLFEVLRREKLYCHRSKCHFGQNQVQFLGHTVSSQGIAV FT DSKKTEVIANWPIPMNQKQLQSFLGLAGYYRRFIYNYATIALPFGPLVKKD FT HTWNWNEHDTAFSKLKSALQSAPVLTLPDFSLQFIVTTDASGYCVGGVLSQ FT KHNGHDHPLAFLSKKLGVHEQNWPTHEKELYAIKLSLEKWRHYLYGRHFDI FT YTDNSACQWLLHHPKVSSKLARFLTFFAQFDFTLHHLKGSMNVVADTLSRP FT PMDSTPTALISPQLAPPLVCTISFHYCESESDKPTSSFRVISNLRTVNASL FT LTPDSQIATVPVSQSIARSAINTINFHTCTPQCASFGSRYRAQQHDGDSQK FT VNTTMISAALSPVEFSGEEMADVSTGHIALHDLSDGYLYTPVQDAEIATSV FT VQMQHASSLGWTSNLKEEFIKAYRTDPGFRDKCRSPHDPYILKDQLLYVQF FT TDNKESKVMRLCVPKSQRNHLRTNIIEQFHDSSIAAHPGIRRTYLRIKQWY FT YWASLHEDVSDYVQSCETCTRWKHSNAKKNGKLIPIPIPKECWEVVSIDFV FT TGLPESDGYDAIMTIVDKLSKRPIYCPVHTTDDAKEIAHYFFDNVVRHHGV FT PAVVISDRDPKFTSRFWKSLAQVMGIQLNMTTSYRAQADGQTERQNLVLED FT ALRCMVSYHGDDWAAKLGTIEYAHATLVSASTGRSPFEVDTGRKERNPFGT FT FPTLSTTVQVQQGLSEYANRFKDERDKIIVKAKEHLLKAQASQKKYYDQHR FT SNVQFKEGDLVMLDTRRIPLKHAAKVIDVKRAKLAARKVGPFVIKRMINDN FT AARLILPRSMKSLNPTFNVDVLSHYVSNPDKFETRVLLKASRIITNEDTGE FT DLHIIEKLLRKRQFNRKTEWLVKWHGLPDHESSWELEKDIKHVSHWKVLVD FT DFKRRQREVKPGR" XX SQ Sequence 6301 BP; 1682 A; 1540 C; 1409 G; 1670 T; 0 other; tctggtagca cttacggtca ttttcgccgg gcaagtggtc agaagatctt caatcgaccg 60 actcgactcg ctacttcggc tttcagctcg actactgcta aattatccgg gttagggtta 120 ctgctttcgc atatactgct actctacgtg ttctctgact tagcggcatt aacgcttttc 180 gctagccgta taaagtcttg cataatcgac attaacgctt ttcgctagtc gattacgcta 240 actagcctca cgctttttgc taacggttag ttatccgaag gatttgtact agtttaacgc 300 ttttcgcttc actagtcacc ttcccgcacg taagcctagt atattgcgaa aacctttggc 360 cttgtatgac caaggtgaac aaccaaaaaa gtaaaaacct caactcaaac ccagacccta 420 atctacaagc agtagatcga cttcgtatta agggattaaa ctcagttaat cgtcttgcaa 480 gcttaactca ccacttacaa gaccaggaga agagtttcca ctctaagtcc gagcgtatac 540 tttatcgaga agcttgccgt atcctaagtt tacaagtggt gcgtattcat aacacactca 600 ctactgtatt cgaccgtgaa cttaaggaga gctcgcgtaa aagagcactt gaagaggctc 660 aaaaggaaga gctacttgtt cagggtttct gccagaagaa atccaattac aaggcaaagc 720 gccaacgctt gaattagcgc taagtagcgt tgtttaagtg ttgttttaaa cttttttcgc 780 attgttttag tgtaattgca ctttggctca gccaatcagt agttgcctaa accccagcac 840 ccgtataatt ccgaatttga gaatccgcgt aattttcagt cgtttcctga attttcgcgt 900 aattttcgag taagctttgg gtatttttcc agtctatgcc taagcgaact gctcgtgagt 960 gggaagaaga tcagcaacat cgtctcattc tcaccattga acaagccgtt caacgcactt 1020 tcacagttcg tgctgctatc catttgcagt acgaggttac ttgcttgacg gaacatctcc 1080 gtgaagtttt ctttccgttt ttcgaaactc acctcgaccg tgttatcgag actgagtttg 1140 gactgtttct ctacgagacc gtcgacaact tgaacacctg cgtcaaccgc atcgacaccg 1200 aagttcgtgc ttttgttgat cgcgttatca gcatcaagcg cgcccgtttc gagtagctgt 1260 tgacagtgtc gttatagctc tagttctagt agctagcagc tgtacattcg taacgtaact 1320 ttaatcagct tttagctcaa gttacactat catgacttcg ttaaatcctg gcggatggtc 1380 tgctgaccgt ctgacacagt ctgtggtcga aatggcgcag aagcaacaag cactaatcga 1440 cgttttgact tcgcaacgca aggaagtcaa agttgaaggt ataagcctac ctcgcttcta 1500 tggaaacatg ggtgactcgg ttgaattgta cttcgaccaa gttattcatt actttgaggc 1560 gaagaacatt aattggcaag atgagaatca gagtaagcgc atcattgcca tgatgactgc 1620 caatttcagg ggaaatgctg ctgcatggta catgctttgc agggattcca ttagtgacgt 1680 ccaagacttg atccagaagc tcacgaagga atttgttcct ccggatcttc aggagcgtct 1740 tcgagatcga ctgtacagtc tcaagcaaaa acgttgttct agcttggagg actacatctc 1800 tcagttccgc gttgctatca tgcaagtcaa ggacatgagt gagcttgaca agatcacgta 1860 cttcattcga ggtcttgtta gccccacaaa agaagaagtt cagtatcgtc gctgcacgac 1920 ggtatctgag gctctctcaa ttgcactcga gtatgacaga tcacactttc gtgctggtcc 1980 gtttcagaag aatcgttgga cacctccaag atcttttgga cgttccaact ccacgtcatt 2040 cgctcgttcc aacacggctc cacagcgtcc tgctgagaat gaacctgagc ctatggaaat 2100 cgacactggt catgtgcata acccccgccg tgacaattat cgtcgccctg ttcagaacaa 2160 taaccgcaac agtggcaacc cgaagaagtg tcggtactgt aagaatcctg gtcacacgat 2220 tgaacagtgc ttcaagcttc aaaatcgaca gtatcatgga gcgaacaaca gctatcagtc 2280 taacactaag cgtggtctgt tcgctgttca cactttggcc actgaaaagc caaagtccgt 2340 tgaagttgtt gagataaatg atctcaacgc tgctaccatc cagtcactac cagctccgaa 2400 tgagttgatt cggaagccag gtctgtgtga aggcaaacgt gttaccatta tgttagacac 2460 gggagccaca tgcaatgtca ttcgtcctgg attggtggat actattcctg acaccatgat 2520 ctctcgagtc accttgtttg acggaagcac aacgaagaaa cgtgccgttc acaaaggcaa 2580 ggtcaggatg gttatcgatt cagagactta gaggtcctgg aatggtctat gagtcctgaa 2640 cacgatgtca ttttcggaaa accttggttt accaagtacc aaccaattat tgattggcgt 2700 actcatcacc tgcagttcaa accgcaagga atgaagccag tgttgcgcaa ggtggaagta 2760 tctggtgctg agttcaaagc caaagccaag cgccatgact acgatgagat ttaccgcgtc 2820 aaaattactc cagctcaacc cgtcacggag gaaccacaag aaattgtgcc tctccttgat 2880 gagtttgctg acgtgtttcc agacgtttta cccgatgggt tacctcctca tcgacgcgtg 2940 gaattcgagc tcaacatgaa gtcagatgct atgccaagca cacgcgcacc ttttcggctc 3000 tcgaagacag aacaagatgc ccttgatcta tttgtcgaag aaaagttgaa gaaaggttgg 3060 atcgaactat ccgattcacc ttgggtttcc aacatctttg gtatcccgaa gaaagacccg 3120 aaatcaggga aacaactttc tcgagctgag tgcctacggt cgggaaatgc cacgttaccg 3180 attcgttggg tgattgatta tcgttggctc aactcgcaaa cgatcatcgc cagaattcca 3240 ctcccaagag ttgacgaaac atttgacaag atgtatggat gcatcatctt ctcagtcttg 3300 gatctcgcgc aaggttacca tcagatgagg attgccttga aaagtcgtca gtacacagcg 3360 ttccgcactc attctgagac ctgtcagtgg tgtgttgcgc caatgggtct tgctggaatg 3420 ccaggtgtct ggtcacgtct tatgcgtgtc ctactaggca aatatccgtt tatcgtggtg 3480 tatctggatg acatttgtgt attttccaag aacatgaagg agcatctgca gcatctccgc 3540 acgctcttcg aagtgttacg cagagagaag ctgtactgtc atcgttcgaa atgtcatttt 3600 gggcagaatc aagttcagtt cctgggccac accgtgtcaa gtcaaggtat tgcggtggat 3660 tccaagaaaa ctgaagtgat cgccaattgg ccaattccca tgaaccaaaa gcaattgcaa 3720 agctttttgg gtctagcagg ctactaccgt cgcttcattt acaactacgc gacaatcgcc 3780 ttaccgtttg gacctctagt caagaaggac catacctgga attggaatta agagcatgat 3840 accgccttca gcaagctaaa atcagcattg caatccgccc cagtcctgac tttaccggat 3900 ttctctcttc agttcatcgt gacaaccgat gcttcaggat attgtgtggg tggagtactt 3960 tcgcaaaagc acaacggaca cgatcatccg ttagctttcc tctccaagaa gttgggtgtg 4020 catgaacaaa attggcctac ccacgagaag gaactctatg caattaagct gtcgctggaa 4080 aaatggcgtc attacctcta tggtcgtcat ttcgacatct acacggacaa cagtgcatgt 4140 cagtggttgt tacaccaccc gaaggtttct tcgaagcttg cacgcttctt gaccttcttt 4200 gctcagttcg acttcaccct gcatcacctg aaaggatcga tgaatgtcgt agctgataca 4260 ctgtcccgtc ctccaatgga ttcaactccg actgcgttga tatcaccaca attggctccg 4320 cctcttgtct gcacaatcag ttttcattat tgtgagtctg aaagtgataa accgacatcg 4380 agttttcgcg taattagcaa tctacgcaca gtcaatgctt cgctattgac tccagacagt 4440 caaatcgcga cggttccagt ctcacagagt attgcgcgtt ccgctatcaa tacgatcaac 4500 tttcatacgt gtacaccgca gtgtgccagt tttggatcac gctaccgtgc acagcaacat 4560 gatggagact cccagaaggt gaatacgacc atgatatctg cagctctctc gcctgttgaa 4620 ttttcggggg aggagatggc ggatgtttct actggtcaca tcgccttaca tgatctttcc 4680 gatggttatc tctacactcc tgttcaagat gcagaaattg ccacatcagt tgtgcaaatg 4740 caacatgcaa gttcgctagg atggacttcg aatctcaaag aagagttcat caaagcctac 4800 cgcactgatc ccggatttcg tgacaagtgt cgtagtccgc atgatccata catactcaag 4860 gatcaattgc tttatgtgca attcacggac aacaaggagt ccaaagtgat gagactttgt 4920 gtcccgaaat cgcagcgcaa tcatctaagg acgaatatta ttgagcaatt tcatgattcc 4980 agtattgccg cgcacccagg aattcgtcgt acgtacctcc gtatcaagca atggtactac 5040 tgggcgtcgc ttcatgaaga cgtttctgat tacgtgcaaa gttgtgaaac atgcacacgt 5100 tggaagcaca gcaacgccaa gaagaatggc aagctgattc caattccgat tcctaaggaa 5160 tgttgggaag tcgtctccat agatttcgtt actggattgc cagaatcaga tggctatgat 5220 gctatcatga ccatcgtgga caagttatcc aagcgtccga tctactgtcc cgttcacact 5280 accgatgatg ccaaagaaat cgctcattat ttcttcgaca acgtcgttcg gcatcatgga 5340 gtgcctgcag tggtaatcag tgatcgtgat cccaaattca catcgcgatt ttggaaatct 5400 ctcgcgcagg tcatgggtat acaattgaat atgacaacgt cgtaccgcgc tcaagctgac 5460 ggccaaactg aacgtcaaaa cctggtacta gaagacgcac ttcgttgcat ggtctcgtat 5520 catggtgatg actgggctgc caagttgggg acgattgagt atgctcatgc cacgctagtc 5580 agtgcctcta caggacgttc gccatttgaa gtagacacag ggcgtaagga acgcaatccc 5640 ttcggaactt ttcctacgct gtctaccaca gttcaagtac aacaaggact gtctgagtat 5700 gcaaaccgct tcaaggatga acgtgacaag attattgtca aagccaagga gcacctactc 5760 aaggctcaag catcgcaaaa gaagtactac gatcaacacc gtagcaatgt gcaattcaag 5820 gaaggagatt tggttatgct ggatacacgc cgtattccac tcaagcatgc tgcgaaagtc 5880 attgacgtca aacgtgcaaa gttagccgct cgaaaagttg gtccgttcgt tatcaagcgc 5940 atgatcaacg acaacgctgc tcgtctgatt ttgccacgca gtatgaagtc gctgaaccct 6000 actttcaacg tagacgttct cagccattac gtctccaacc cggacaagtt tgagactcgt 6060 gttcttctga aagcatctcg catcatcacg aatgaagaca ctggagaaga cctccacatt 6120 atcgagaaac ttctacgcaa gcgccagttc aatcgcaaga ctgagtggct tgtcaagtgg 6180 catggtctcc cagaccacga atcttcgtgg gaactcgaga aagacatcaa gcacgtctct 6240 cactggaaag ttctcgtcga cgacttcaag cgccgtcaac gcgaagtcaa acccgggagg 6300 a 6301 // ID Copia-3_SMo-LTR repbase; DNA; PLN; 174 BP. XX AC ADFJ01002177; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_SMo_; KW Copia-3_SMo-I; Copia-3_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-174 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01002177; Positions 8920 9093. XX SQ Sequence 174 BP; 39 A; 40 C; 49 G; 46 T; 0 other; tggaagtatt gagggaatat tcgtgattcc ctcttaggtc aagttgaccg tcgtgtctgt 60 tcagttctta tagtcaataa gagagacgcc cggcaggccc cgggcgtagc gccagcagcg 120 gctggcattc cagagtacat tcgtgatttc tatcccgaat atggtatcgg agca 174 // ID L1-4_VC repbase; DNA; PLN; 6116 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.03, Created) DT 20-JAN-2010 (Rel. 15.03, Last updated, Version 1) XX DE L1-type non-LTR retrotransposon - consensus. XX KW L1; Non-LTR Retrotransposon; Transposable Element; L1-4_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-6116 RA Kapitonov V.V. and Jurka J.; RT "Non-LTR retrotransposons from the Volvox carteri genome."; RL Repbase Reports 10(3), 483-483 (2010). XX DR [1] (Consensus) XX CC The consensus sequence is less than 2% divergent from copies of CC L1-4_VC. L1-4_VC is usually inserted into long tracts of (CA)n. CC This sequence was derived from sequence data produced by the US CC Department of Energy Joint Genome Institute CC http://www.jgi.doe.gov/ in collaboration with the user community. XX FH Key Location/Qualifiers FT CDS 141..1733 FT /product="L1-4_VC_1p" FT /note="ORF1." FT /translation="MARNSSTDQAAGVTAERSEATISISLLREITKMEQPF FT GKLRSLAMRAIFQGNYLENRKQVIDIMAGPIGHRIVQTVQQELKAPYVFVG FT EPVAWEARNDEGVVGQINVYVPEEWITPVKNLADHCGRINLADLHLGDYHI FT QDLVVDIVGASAQYFRLTGLPPAFPQKCLFWLIAEAYGFDVDEYGKKWGIV FT EASLTTAVVWVRWDQPALPARMNIFSIEEDGRRIHRGAWRAQHTYYDTQTP FT ALPRPPKIQQRNRLIPNLPPPISAAAVIAARARPNLATPAVGEVGGSSNAR FT QPMATGQPQTIQQTTRQQQMQNRVSNEEAAEMAGRAAAAVVRRQVQQQQQQ FT QQQQQQQQTQQQQQQTQQQQQQQQQQRQNQQPQQQQQQIQQQPPQQQQRQQ FT QQLSYTTTNQPGLPTSASIPKTHSITHPLLGQPIQDVAGNRPDEQQWQLQN FT RRTHRGNPILPTDQPVLGKHADKPTSRTSSPGVSPQHKRRDSVISPPRFHV FT LPHDDPGDLMQVGEEEEVRNIVVVRGNGDTEIPPR" FT CDS 1737..5999 FT /product="L1-4_VC_2p" FT /note="composed of the APE and RT domains." FT /translation="MGRRTRCRRPNNRPLRIASHNVAGLFTHSAFTRIHAA FT ARVWAQHRLDVICLQETHHMGDGDLTILTRELQFAAQKIGIPGWDIIAQSP FT TTNARTAGVLVLVRKDLYRDFKIIQTPARLLPANIPQGRSASVSFTWCGHR FT IHLINLYLMTSSYSIDQRKACVHSLGDVVNRIGQDDHLLWAGDFNFVHNPM FT LDSTTGEGSRPADLSLAKAFSECCPDMVDTYRYLHPTRRDLSFFYKTSVSG FT GSRLDRIYTSTNLTPFIASSTIPVCTSTDHRLAIIALLPRLVRKRGPGLPR FT LHTHFLDFPDLKGSFLQWIGDECAQRPAETDTVAMLQWWPLFKHRMFNEVN FT VLNRQARERCFPPGGQLRLAIEHATRALEDVQTEHMSAQRIQAAIDAQVAV FT VQAARAEGAQEAERVRLQWIREGERPSRGLTALVHPSKTLQVIPALQDRTG FT RLITDTMKLPQMVADFWGEICSSPTHVTEEARMAVIEALRNRHLVIPEEDA FT YHVGRSEVSDAEVEAVLKEATPGKAPGLDGIPIELYKVCRNEIAPVLAQLY FT TAMGQTQMHPDGFLQGAITVIYKNRGSPTSPGSYRPITLLNTDYRIFTKIL FT TRRLSPILGRIITLEQSAFLPERLIGANVLFLRHLPQLMSTTGQSCLLAFL FT DIAKAYDSLDRNFLFEAMDAMGAGAGLISWTKILLSDTASKAVVNGFFSRE FT VALTAGVRQGCPLAPLLYLFVAQALLCWLQYNQVGIHLPQNNSEMVTGVQF FT ADDTEVVLEGIQAIPAFLDCMRVYAQASGQQLNLDKVELLPLGTHPHHITI FT NHDMKVVHMATALNLPFTDVGETTGRDWDVQLDKVWARFRRISVLNLSIFG FT RAHAAAAYGLHRFTWHMEHGGFPPEAQLMNIEAKAAKLIDRNLGPVAQERR FT LTGVPKYLLYGHPTLGGLGALAVRQHVQARWACWAVRFVRALLQPVLVRPP FT WVMVMHSFLHSLYPKYNPMCIFTSQVGVPWFGLIVLPPDVQRIVTALAYLP FT PVEDVDDHPLVPNAWCWNLPLWGNPVLPEKKLNVQLDNIRPGLEFRHQALL FT GCKALHTLGDVLCAREALDGVMNATDQAGLAIRKAWHQIVDKYLQPQTPLA FT KSLCTYRKWQECMDAIAALLDDIPANWRQAASLLLPLSVESREAMVPPIES FT VTQTLVSRLGWRWGVGPPIRFQQLSVKIATNMQLSPFSMARRVAHTLFIKE FT ATGSSEILDEAILLLQRTFHRLWFHLRWENEQKEIWWRLAVDGVPMLGNSH FT LRMSRPTICGCGGYPIGSVGGVSPRYHHFWACPVAQAIADQLTLSIGLPVS FT REQLWLIQAPQSVQQCVWDVVALAAVSAMEHGRRYMAANMKTNPALLPGPS FT LTEEAICRVIVDFWGRIQGFAALGIPRKGWESVGAHHPFLRIISGKLICSR FT ERLPMRG" XX SQ Sequence 6116 BP; 1633 A; 1457 C; 1546 G; 1480 T; 0 other; caatatagca atatagcaat atagcaacca tatagccaca atcacaactt gcagactcaa 60 catcataaca atgaccgaac cgggttaacc cggtcggtct atttaccttc aataactttt 120 ctgagaacaa agacatcaaa atggctcgca acagttcaac ggatcaggcc gccggtgtga 180 cggcggaacg atctgaagca accatatcaa tttcccttct tagggaaatt acgaagatgg 240 agcaaccttt tggcaaactt cgatcgctgg caatgagagc aatctttcaa ggaaactacc 300 tagagaacag aaagcaggta atagacatta tggcaggacc gattggacac cgaatagtgc 360 agacagtaca acaggagcta aaagctcctt atgttttcgt cggagaaccg gtcgcttggg 420 aagctcgcaa cgacgaagga gtcgttggac agatcaacgt ctacgtaccg gaggagtgga 480 ttacgcccgt aaaaaactta gcggaccatt gcggacgaat caatctagca gatctccatc 540 taggagatta ccacattcaa gatcttgtag tagacatagt gggggcatct gcccaatact 600 tcagactgac aggattacct ccagcatttc ctcagaaatg cctattctgg cttattgcgg 660 aagcctacgg ctttgacgta gatgaatatg gaaagaaatg ggggatagtc gaggctagtc 720 tcactacagc cgtggtgtgg gtgcgatggg atcagcccgc attacccgcc aggatgaata 780 ttttctccat tgaggaggat ggccggcgga ttcatagggg agcgtggaga gcgcaacaca 840 cgtattacga cacacagact ccggctttgc cccgcccccc caagattcaa caacgaaacc 900 gcttgatacc gaatctcccg ccgcccattt cggcggcggc agtcatcgcg gcgcgagcac 960 ggccaaatct agcgacgcca gctgtgggtg aggtaggagg atcaagtaat gcacgtcaac 1020 ccatggctac tggacagccc cagacaatcc agcaaacaac tcgacaacag cagatgcaaa 1080 atcgagtatc caacgaggag gcagcagaaa tggcaggcag agcagcagcc gccgttgtac 1140 gaagacaagt acaacaacag cagcaacagc aacaacagca acagcaacaa cagacacagc 1200 aacagcaaca gcaaacacag cagcaacaac agcaacagca acaacaacga cagaaccagc 1260 aaccacaaca gcaacagcaa cagatacagc aacagccgcc acagcagcag cagcgacaac 1320 agcagcagct ctcatacaca accaccaatc aaccgggact accgacatca gcttctatcc 1380 ccaaaactca ctccatcacg caccccttac ttggccaacc gattcaagat gtggccggaa 1440 ataggccaga tgaacagcaa tggcaattac aaaacagacg gacgcatcgt ggaaacccaa 1500 ttctgcccac cgaccaacct gtgctgggca agcatgcgga caaaccaacg tcacgcacgt 1560 catctccagg ggtcagtccc caacacaaga ggagggactc ggtaataagc ccgcccaggt 1620 ttcatgttct tccacatgac gacccgggtg acctcatgca agtcggcgag gaggaggaag 1680 tgagaaatat agtagtagtc cgcggaaatg gggatacgga aataccccct aggtaaatgg 1740 ggcgacggac aagatgcagg aggcctaata atagacccct tcgcatagcg tcccataatg 1800 tagcaggttt attcacgcat tcggcattta ctcgtatcca tgctgcggct agagtatggg 1860 cccaacatag gttagatgtc atttgtttac aggagacaca tcatatggga gatggagacc 1920 tgacaattct cactagagaa ttgcaattcg cggctcagaa aatagggata ccgggatggg 1980 atataatagc acaatccccc acgaccaatg cccggacggc tggagtatta gtgctagtgc 2040 gcaaagatct ttatcgcgac tttaaaataa tacaaacacc ggcacgacta cttccggcta 2100 acattcccca aggccgtagc gcgtcggttt cgttcacgtg gtgtggtcac cgtattcatt 2160 tgattaattt gtacctcatg acatctagtt actcgataga tcagaggaag gcgtgtgtgc 2220 attctcttgg cgatgtggta aataggatag gacaggatga tcatttgctt tgggctggag 2280 attttaattt tgtccataat ccgatgctag attccaccac aggagaaggg agtagacccg 2340 cggacttatc cttagccaag gctttctccg aatgctgccc ggatatggta gacacatatc 2400 gctacctcca ccctacccgt cgcgaccttt cgtttttcta taaaacaagt gtgtcgggag 2460 ggtcacgtct tgatcgaatc tatacttcca caaacctcac ccccttcatc gcttcctcta 2520 ccattccagt gtgcacttcg acagaccatc gtttagctat tattgctctt ttacctcgtc 2580 ttgtgagaaa gcgtggtcca ggccttccaa ggctacacac gcatttctta gatttccctg 2640 acttgaaggg aagcttcttg caatggattg gtgatgagtg tgcgcagaga cccgctgaga 2700 cagacacagt agctatgcta caatggtggc cgttgtttaa acatcgaatg ttcaatgaag 2760 taaatgttct taatcggcaa gcgcgagaac gttgttttcc cccggggggg caactacgtt 2820 tggcaataga gcatgcaaca agggcactgg aagatgtgca gaccgaacat atgagtgcac 2880 agaggatcca agcggcaatt gacgcccaag tagcggttgt acaagcggct agagctgaag 2940 gtgcacagga ggcggaacgg gttcggttac agtggattcg tgagggtgaa cggcctagta 3000 gagggctaac tgccctggtg catccgtcta agactctgca agttattccg gcgttgcaag 3060 atagaacggg tcgtcttatt acagacacga tgaagttgcc acagatggtt gcggattttt 3120 ggggagagat ttgttcctcc ccaactcatg tgactgaaga ggctaggatg gctgttatag 3180 aggcgctgcg gaaccgccac cttgtcattc cggaggagga tgcgtatcat gtaggaagat 3240 cggaggtgtc tgacgctgaa gtggaagcgg tgctcaagga agcgacgcca ggcaaagcgc 3300 ccggtctaga tggcatccca attgaattat acaaggtgtg tcggaacgag attgcaccag 3360 ttcttgctca actgtataca gccatgggcc aaacccaaat gcacccagat ggctttttgc 3420 aaggtgctat cacggttatt tataaaaatc gggggtctcc cacctccccg ggtagttatc 3480 gaccgattac cttgttgaat acagattaca ggattttcac caaaatttta acccgtaggc 3540 tgagtccaat actagggcga attatcacgc tcgagcagtc tgctttcctg ccagagcgct 3600 tgataggtgc aaatgttctt ttcctgcggc atctaccgca acttatgtcg acgacaggac 3660 agtcgtgtct cctggctttt ttggatattg ctaaagctta cgattcctta gatcgtaatt 3720 ttttatttga agcaatggat gctatgggcg caggagcagg gttaattagt tggactaaaa 3780 ttctgttatc cgatacagcg tcgaaagcgg tagtaaatgg ttttttttcc cgtgaagttg 3840 ctcttacagc gggtgtgcga cagggatgtc cgttggcacc gttgctatac ttgtttgtcg 3900 cgcaggcgtt actgtgttgg ttacagtaca accaagtggg gattcattta ccccaaaata 3960 attcagaaat ggttacaggt gtgcaatttg ctgatgacac ggaagttgtt ttagaaggaa 4020 tccaagcaat tccggctttc cttgactgta tgagggtgta cgcacaggct tctggacagc 4080 aacttaacct ggataaggtt gagctgttac ctctcggcac ccacccacat catataacaa 4140 taaatcatga catgaaggtc gtacatatgg ctacggctct caatctacct tttacggatg 4200 tgggagaaac cacaggcagg gactgggatg tgcaactaga caaagtctgg gctcggtttc 4260 gacgcatttc ggtgttaaat ctttccattt ttgggcgtgc acatgcagcg gctgcatatg 4320 ggctgcatcg ttttacgtgg catatggaac acggggggtt tcccccagaa gctcaactca 4380 tgaatattga ggctaaagcg gccaagctta ttgataggaa cctcggaccg gtcgcacaag 4440 aaagacgact caccggggtt cctaaatatt tgttatatgg ccatccaact ttgggcggtt 4500 tgggggcatt agcagtacga caacatgtac aagcgcgatg ggcatgctgg gcagtgcgtt 4560 ttgtgagagc attactccaa ccagtcttag tgcgtccgcc ttgggtgatg gtcatgcact 4620 ctttcctaca tagcctttac cccaaatata atcctatgtg tatttttacg tcccaggtgg 4680 gagtgccttg gtttggatta atcgttttac cgccagatgt tcagcgcatt gtgacagcgt 4740 tggcatacct tcccccagtg gaagatgttg atgaccaccc gttagttcct aatgcgtggt 4800 gttggaattt gccattgtgg ggaaaccctg ttcttccaga aaaaaaattg aatgtccagt 4860 tagataacat ccgcccggga ctagaatttc gtcatcaagc cctcctgggc tgtaaagcat 4920 tgcatacgtt gggagatgtt ctttgcgcgc gagaggcctt ggatggagtt atgaatgcaa 4980 cggaccaagc aggcctagca atacgcaagg cttggcatca aatagtggat aaatacctcc 5040 aaccgcaaac cccactagct aaatccctgt gcacctatcg taaatggcag gaatgtatgg 5100 atgctattgc cgctcttcta gatgatattc cagcgaattg gagacaggcg gctagtcttt 5160 tgttgccgct gagtgtagaa tctagggaag cgatggtgcc ccctattgag tcggttactc 5220 aaaccctagt gtcgaggctt ggttggagat ggggtgtagg gcctccaatc cgattccaac 5280 aattatccgt taaaatagcg actaatatgc aactttcacc tttttcgatg gctcgccgtg 5340 tggcccatac ccttttcatc aaagaggcga cgggttcttc tgagatattg gatgaagcta 5400 ttcttctttt gcaacggaca ttccatcgtt tatggtttca tttacggtgg gaaaatgaac 5460 aaaaagagat ttggtggcgt cttgcggttg atggggtgcc tatgttagga aattcccatc 5520 ttaggatgtc gcgcccaacg atatgtggtt gtggaggtta tccaataggt tcagtgggag 5580 gtgtatcccc tcgctatcat catttctggg cctgtccggt ggcacaggca atagcagatc 5640 aacttactct ttcaatagga ttgccagtct caagggagca actttggctt atccaagccc 5700 cacaatcagt gcaacaatgt gtttgggatg ttgtggctct tgctgcggtg tcagccatgg 5760 agcatgggag acgttatatg gctgcaaaca tgaaaaccaa cccggcactg ttacctggtc 5820 cttcccttac ggaagaagca atttgtcgag ttattgttga tttttggggc cgcattcagg 5880 gtttcgcagc tttaggaatt ccacgaaaag gttgggaatc cgttggcgca catcacccct 5940 ttttgaggat tatatctggc aaattgattt gttcgcgaga gcggttaccg atgagaggtt 6000 aattatctga gatgataatc ttttggtata ttagtctcta ctgcagtgca cggccagctg 6060 gcccgatggc tctactcttc gggagtctgg agcccactgt aacaaccaca cacaca 6116 // ID PIF_Harbinger-2_EmiHux repbase; DNA; PLN; 4837 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Harbinger; DNA transposon; Transposable Element; KW PIF_Harbinger-2_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 4837 BP; 700 A; 1742 C; 1398 G; 897 T; 100 other; ggatcaccca cacaggatca ccgagcgctg caaattcttt tggagagagg cttgtatctt 60 aagaattctt ttggatccgt tctttacgcg aaaattcttt ggggggcctt gagaggtgac 120 ctggctggcc ggtccgccgc tctccacgcg ctgcttgtgc gcagcgtgcg ccgttctgca 180 ctcgggcaca ccaccgctcc actctccgct ctcctccagc cgcacagagc ccaaccagac 240 ccgacggtcg gcgttgagcg tcgttgagca gtgccacgag aggcagcagc gtctcgcccg 300 tgtgccacag ccgcgtgtga gttgcgatgg gagccagcta gcctcccgac cggcctcccg 360 cgcacactcg cacttggcag cctcgagcct caccgcgccc gctgcacact gcctcaggca 420 ccttggctcc cgccaccacg ccgccgctcc agtgctcctg ccactgccgc agccctccgc 480 gtcgcgtttc cgccaccctt tgaccgaggc cgtgcgctag gcaggcgtgc agctacaggt 540 gcgcggcggc gcgcggcgca ccaccgccgc gctctcactc ctcatcccgg ccagctctcc 600 cctctttccg tcccgctgct cccccgtcac ctcgcgatat ctccctccct ccctccctcc 660 ctctctcgga gcctctcggc aggcctctgt ccctccgccc ccccccttcc tccgccgacc 720 gcgcaccgcg ccatccccgc cgccgtcggc ctcacaccag gtctcatcgg cgctctctgc 780 cgtaggttgc gcgccgctgc agggcgggct gcgcggctcg tcgctcgtgc gtcaggcgcg 840 gccgcggccg cggcgctctc gcctctgctg aggcgcgcta tctgctcgcc tcgccgctct 900 cccccctctc tcgcatctct ctccgcacac ttcccattcg cgccacgccg cggcgtcgcc 960 accgcaccgc cctctctcgc cctcactgcg cgctcctcac ctcgcgatat ctccctccct 1020 ccctccctcc ctctctcgga gcctctcggc aggcctctgt ccctccgccc ccccccgttc 1080 ctccgccgac cgcgcaccgc gccatccccg ccgccgtcgg cctcacacca ggtctcatcg 1140 gcgctctctg ccgtaggttg cgcgccgctg cagggcgggc tgcgcggctc gtcgctcgtg 1200 ggtgaggcgc ggccgcggcg ctctcgcttc tgctgaggcg cgctagctgc tcgcctcgcc 1260 gctctccccc ctctgtcgca cctctctccg cactcctcgg cggcagcccc gcaggctcgg 1320 gtcgctgcaa cctcgagtcg ggttggagcg gatgggcggc gcgggggcca gcgtcggcgg 1380 cgccgccccg ccgccgcctc gactcctcct cctcctccgt cgctgtctac atctttcgac 1440 ggcatgcgcc gcctcgcagg gcgcgtccag agcagctcgg gcggcgctgc tgcggcgggg 1500 gcggatggcg cggtcgccgc gccgctcatc ggtgagccgg cgctcccgcg cggcgctccg 1560 gcggccggcg gcgtgtttcg ccgctgcgga gggcgttgtc gtcgcgaggg gcgggcccac 1620 ggcggcggag gcgctgcgct gacggccgct gacggcggcg gtgagggccc aagcgccggc 1680 cgaagaagcg ttgccgcgat tgccgtggcg tgccgcctgg cgggcccggc gagcggtccc 1740 cgccggtcgg ggctgccagc gctgcacggt gcgagccgca aatcccgccc cccgccacct 1800 ctcgcccctc ccccagccct ctccctcggc cccgcctctc gccccgcccg ggactctccc 1860 cacgccgcct ctccgccacc cgccagccat ccccgccccc gccaccctgg ccccagcgcg 1920 cacgcacccg cacgcgtccc tgccgcagac tggcgcggcg acaaggtgat cgaggctgag 1980 catatgcact ggaggcgacg gcctcgactt gcgcgcgatc ggcgcctcgc tcctctcggc 2040 tcggcaacta tacgcggcgc gccagcgtcg gcctggtcaa ggctgccccg cacacacccc 2100 tctcgccgtc gcctcctccc tccttcccgc gacctcggac taggaacagc tgcggatcga 2160 gcaggcggag ccggccgcgg ttcgatcgaa cagctttctt gatagatgac gtcttgctct 2220 cgaacttggt ttgctgtccg cggcgtcact tccctcgacg cagcgtcgcg gcgggagtgg 2280 agcacagctt cactagcgag tacgacgtgc gctacctgtc tgtacctata cggagatggg 2340 ccctcccacc gcggctgcgc tgaagaagct tttcctcgcc gaccccgtct cctttcattt 2400 ccttttttct ctacagaann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnag 2520 cggcgccgcg acgcgagcgc tctcgcccct ccccccccct ccaccgctag ggcggatgac 2580 gccccgcgct gcttccaccc ccccgccgcc gaggctcatg gcggcgcctc gagagagccg 2640 ccgcgcggtg cggtcgccat tccggtgcag tgggccgggc gccggtctcc ggagccgggg 2700 ggccgcccgt ggggtgagga gggcggaggg gcgcggcggg gccgcccagc ggtgggacac 2760 cgccttcgcc gccctcaccg ccacccccct cgccgctgcc accgccgcgt gcgggtgagg 2820 ggtgtggcgg cgagagagag atttttcata acgctcgacc tcgagatttt ttcctttgcc 2880 ccacaacaaa aaccgagtct tctttcgtgc gccaactttt tctttgttgc ccggtcgtaa 2940 aacgcgcgct cgcgcgcaac tcatactaaa agaaagaaag aaaacggaca acccaaggga 3000 gggatgggag gacggcacgc cgccaccaca cagggatttt aaggagaggg gtgtggtgca 3060 ctagccgtcg cccacccttg ggcgtccgcc tcttcctatc tctcttcgca gtctctctcc 3120 gattctcgct gcgactcata ctttagttat tattttggat cctcgctttt ttggattttt 3180 cgatttgccg acccggccgg gagttgtgtc gttgtagagc tgctgcgatg cggcctgtct 3240 tcaagctgga tccgaccaac actctatcat atgcgccgga tccaactccg tactgggccc 3300 acaatccaag ctcagcttct ctcgcggacc cgctcaagct ttggccacac gaatacgaca 3360 gcgcaagcga gaatcgccgc tgggaagacg ccttaacgtg ggaggatgtg ccaggattcc 3420 accgcagcct caaggattgc acatcatacg aaccttgtgc ggtcaattat gcattctgtg 3480 ccatgtatga ttacatcccg tgctactacg agaaagacac aaaggtgctt ctgttcgatg 3540 tcaacgacag cccggatgca agcgctgccc accagcgcaa gaagcggaac tttcttgcag 3600 ccatgcacta tgcagtggga tatcctactc agcacgaaat gaagaacatt ggcatcagct 3660 atggcacatt ctcagagcag gtccggccga caatctattc cctcgcacgg cacgtgaact 3720 tcctcgatcc ggcactgcga ctgtgggagt acaaccacac tgagttccat cacgagcgtg 3780 tgctgtggat caaagatggt gctcctttga caatttgctg ccccaaaaat cgctttctcc 3840 agcggtgtgt gagatcaggc aagtacaagg agtacgtgct aaagtttgac tatacaatca 3900 ccatgtgcgg tttcccaatc gattacaatg ggctcttcat gggtgtccgg catgattcgg 3960 cacagcattg gtacgcgaag gagttcctag ctcagctata cccttttgaa tatggtatgg 4020 gtgacaaggc gtacgtcgga gttccccaca tgtattgtga gcacaagaag ccaacgggcg 4080 gtgagctgac atgtgaggag tcgatggaca acctgttcat tcagcactac cgtggacgca 4140 atgagcacct aattagggag atgcgttcac ggaagaaatg ttttgcaacc gcatggcggg 4200 gctctttttc gctcctgtcc gccatcacac gctttgccgc gcacatgact gggcttcagg 4260 agcgcatgaa gggaccgcgg tatgacgtgt atggcccctg gccagtgtgt agcgaaaacg 4320 ttttccggtt gtatggtaag accgcctaag tgagcgttat cctgtcccct gctgccccat 4380 tactatcgaa atcaatacag cgcgcgccgg cggaccgttc tcgtcactcg tgatgcggaa 4440 gatgcggcgg tgcaagccca gcgcccgccc atgtcccgcc cacgtgcccg cgccgcgcct 4500 gcccgcgccc acgccgcgcc ccgcccgcgc ccgcccgcgc gcgcccgcgc ctcgggcact 4560 tgcctgcgcc tgcacgcccg cgcacgcccg cgcgcacgcc cgagtgtgcg gcactgcgtg 4620 ccactgtgtg gcgtttcgcc cggtttagca gggtacctgg gcgttttgaa attccgtgca 4680 agggggtgcc gaggtatgcc gcaggccggg atggagtgag atcttgtggg gcagggcgtg 4740 ggctagcgcg cgagggcgca ggcaagtgcc cgagggtatg ggggtgggcg ccaccctggg 4800 gctacccgta gcatcgtcgg ctcagtgatg ggtatcc 4837 // ID Copia-28_PIT-LTR repbase; DNA; PLN; 211 BP. XX AC AATU01002203; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-28_PIT_; KW Copia-28_PIT-I; Copia-28_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-211 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002203; Positions 33673 33463. XX SQ Sequence 211 BP; 60 A; 43 C; 56 G; 52 T; 0 other; tgttggattg tgcatcgagg cctggcgcag attgaagaaa gctggaacag caaagaaacc 60 agatcgttat atgagagagg gcaaaggccc gtgagtgttg gtcaatgctc aggactgaca 120 caaagtaatt cagtcttcat attttccctt tgcaaacaag gagtttgttt gttacttcgc 180 ggggcgtgtc taagagccac aactcccaac a 211 // ID Copia-48_PIT-LTR repbase; DNA; PLN; 272 BP. XX AC AATU01006156; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-48_PIT_; KW Copia-48_PIT-I; Copia-48_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-272 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006156; Positions 85179 84908. XX SQ Sequence 272 BP; 85 A; 52 C; 70 G; 65 T; 0 other; tgttgtgatg tactggtcct cacggttggt gccgaaccga ctaaacaagg ttttgttgaa 60 gagggtgtgt cactgagaca gttggaaaag gtgaggaaag tagtgagaaa accataatga 120 tggaaattga gctagacgaa gaaagagaga gaaaatgcta gagctcactt cacaaaatac 180 aaacagcagc acaagctgcc tttcccacca acttcgagtg ctctgtgttt cttgcttcag 240 gtgcagacgc ttacatacca gtgcagttta ca 272 // ID Gypsy-2_SMo-LTR repbase; DNA; PLN; 625 BP. XX AC ADFJ01003279; XX DT 28-JAN-2011 (Rel. 16.02, Created) DT 28-JAN-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Selaginella moellendorffii genome: DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2_SMo_; KW Gypsy-2_SMo-I; Gypsy-2_SMo-LTR. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-625 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Selaginella moellendorffii RT genome."; RL Direct Submission to RU (27-JAN-2011). XX DR Genome; ADFJ01003279; Positions 119115 118491. XX SQ Sequence 625 BP; 161 A; 116 C; 196 G; 152 T; 0 other; tgtcatccca ctaacttgtt ccagaagatg tgagcgaaga gttgcagcag gaaatttccg 60 agttatgagc cggagatgcg agaagtttgc aggtactacg aggtgtgttc cagaagattg 120 gtgttatcgg aatattccgg atgtgggata accccaagaa taaagttagg gctagattag 180 gagggatgcc agggatatcc tggatatgaa gggaatattc tgcaggaggg agttaaggcc 240 ggattcttgc cggggaaaaa acggttgctt ggaggaagtt ttgacagcgt tttggagatg 300 gtgcgagacg gtcagcagtc tggtcctgtg cgtcgcaacc ccacagcaga tcggatcacg 360 aggaagcaca gggtgagaag agcggtggag cgcatgcatg tccagcctga tcaacagatt 420 ctcacgcatt gccccacttg cggccaagtt tggtatcgtc tgatgcgtga agtcctagag 480 gagctcttgg cacctgaggc cgctgattta gtggcaaaca tcccgatgta tccagttcag 540 tagttggaat gaaagatgac gttgagtttt cctggagttt tctgtgtgcg ttagtagaga 600 gcagttggaa aaagttagga ctaca 625 // ID Gypsy-36_PIT-LTR repbase; DNA; PLN; 571 BP. XX AC AATU01001299; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-36_PIT_; KW Gypsy-36_PIT-I; Gypsy-36_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-571 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001299; Positions 60112 59542. XX SQ Sequence 571 BP; 139 A; 128 C; 183 G; 121 T; 0 other; tgtaatagtg gtcgaccagc tggcttccgt agcaagtgca acggaggcag ctgccggata 60 cttaaggaaa caaacggacg gatacggtag gcagtaggag gaggtgagta gtaccttgaa 120 gtctctcacg aaggctggcg ctggctgcca gagtgatggg tcgacaagga ttctgtagga 180 attggacgga cggacgggag cgaagaggct ggcgcacttg agatttggct gtctactact 240 caagtcggac aacctgtgac gttggagagc gtcaccttgg agcgaccgag tgcaaagcag 300 acggtgtcta ctgaaacgtt ctactagtag ttcccggaca cggagtgcaa ttcgggcgga 360 gttcaacgcc agcagagtct gccgaaacgt tctactggca gtggctgtag gcttaggact 420 aaacggaaat aaagtaggtg ctgtcaccag tcgggtgcac accggcgcgg gtacacggat 480 tgtactcgtc ggcctgtagg actttggact ttcgttatca gtactgtcga ccaaacctcg 540 gcgagcagag gattctatta gcctcgttac a 571 // ID Copia-12_PIT-I repbase; DNA; PLN; 4566 BP. XX AC AATU01000519; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-12_PIT_; KW Copia-12_PIT-LTR; Copia-12_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4566 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000519; Positions 164796 169361. XX CC Positions [1925-2437] - Integrase core CC 'GAACA' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 1394..4462 FT /product="Copia-12_PIT-I_1p" FT /translation="MDREQLFAITPAFLSVRVANGNVELATEKGSTVVTTT FT TRTGEKHTVLLKNVYYAKGIDRNLMSVAQLTQKGYSLRIREGPVYGTSDTG FT KQIAEVKKCPLNGLWSVGIEEAAASFAEMKTSTLRQWHERLGHVSYQDLIR FT MMDKKLVGGMVASNRKVDFCMNCAEAKQARRLKNKHDTSASAPTNEPGATL FT CVDLKTDMTPDRLGHKHILTIVDHATNFNRVYLLSKKSKAEEHLENFISEF FT ERQYDTNVKVIRCDGGGEFISGRLNRFLLNRGIRHQLTERDMSSSNGKAER FT FHRTLMDSARAMLWASTLPQRFWGDAVLYASYIRNYLPTRANADYASPIEA FT LSGKVPSVSHILKFGSKCTSHIAHPSEKSTKKRAEKGIVIGVDPQKKAYRV FT YIPRTKRVISTTHIQNIDRLDTRAVGRYMDATDATNADEVANEGDRATEDV FT SSPREESELSEADVGSPVENQQLTSRAIQRIFGLNRGNSSPKGDDFQLPQS FT FLDEFATPVTALLTVAPREGTAFVTLLESDRTKVPMTVAEAMNSPYCREWM FT QAMQEELHAISSNATWEIVDIPSDGNLITAKWVLRIKFDNKGELERFKARL FT VARGFNQKYGVDFEETFAPVLKIASLRLIVALAALWHAIVRQGDVPNAYLR FT ANLDRPIYMRAPAGLRVPKGKCMLLLKSLYGLKQSGKLWNDTIHAYLLELG FT FERSQLDPCQYFRRYNGSLTILGLYVDDVVVVSQRESDSNWTMKKLSGQFQ FT IKDMGPAKRCLGINIAQSTSGISMDQTTNIDSLLAKLEMENCRPVKTPMKS FT TRNLHSEDCEPHFDTNNMRETIGSLLWISTCTRPDITMAVNYLARFVAAPT FT TTHWTAVKRILRYLKGTRELKLEFRRPQAPQHRIGVAIYSDADWAGDKDAK FT STSGGLLTINDMLISWYSKKQSTVSLSTAEAEYIAAATAVQDCLWVKQLID FT ELKLRVKGDNVILHVDNQSAIKNMENDVTTARMKHINIKFHFIRDAIRNEG FT ISIRYCPTTEMKADILT" XX SQ Sequence 4566 BP; 1309 A; 1130 C; 1134 G; 993 T; 0 other; ggttatgagc ccaactggcc gaacctctgc cccgaccagt gaagacttcg acgctacgcg 60 aggcgacgtc gaagacctaa acgaagaggc cgacgcgcga ggtgccgacg cctttgaaga 120 cgcccgcgag gaaatacgga taggtttccc tgacgatcta cgctttaatc cctcggatca 180 agccaccatg gagcagcacg accagctcta gctgattcgt cagctgcagg cagatctggc 240 agtcacgaaa acccaattgg cagcaaaagc tccgtcaatg tcggacacta gcatggaatc 300 agcccctcct tcgccgaaga aacccaaaat taaggatgtg cgctgctcaa acttcaaggg 360 aaacgagggt taccctggtt taggcgccgg atttgaaaac tttattcatg agttcgaaca 420 cgcaattcga gccgaagggc tggtgaatgg ctcaacctgg accaacgacc ttaaggcgtc 480 ggtgatcgtt aactatctca aaggtaaagc gtccaggtat taccataaga aaagctcaga 540 gtggcaacga cgtcacgacg gtgaaaacat gccatattca gaggtgaagc gcgcgatgcg 600 tgcagaattt ggctgtaagc taagccaact ggagctcagc accaagatgc gttgtaataa 660 acgagaaagt gactcgtggc acgattactt agagtatttg aactttattg aaggacttat 720 ggagggagac cagacgaagt tagtgatgga agtctttggt aaccacgcat gccctgagct 780 cgcagctaca cttctggcgg ccgtacctga agacactacg gattatgcta cagaaagcga 840 ccgcatgaag cgattactgt acaagcttag aggcgattga cgacgccata gcagcaagcg 900 agatgaccgg aaaatacgtc aaagtgacca ccgcaacgaa aattcaaacg gtgtacgcgg 960 gcaaaaacgc aacaataacc aaaaggaaga acgatcgtgg cggaatcata aaagcaatga 1020 cgaagacagt gataaacagt ctcgccagca gaacaatggt caagcatttg ctgctgcttc 1080 tggaaatcga caccagattc gatgtcacgt ctgtaaccag ctcgggcaca agatttttac 1140 atgtccagtg gtggaacaag ccaagaaact agcatccaca accagtagtg cgcatgttgc 1200 gacggcgact gacaatactg cagtcagtac cggtagtgtg aatacagcca cagctgaaga 1260 agtagacagc agttattcta gcgactctga cgatgaagct cacgtctggg tagcggctag 1320 cactaccgac tcagccaatt tctttaattc gaacgtttgg accattgatt ctggagcaac 1380 acaccacttg tgcatggatc gcgagcagct ttttgcaatt acaccagcat ttctctctgt 1440 tcgagtcgct aatggcaatg ttgagctcgc taccgaaaag ggcagcactg tcgtcacgac 1500 aactacgcgt actggagaaa agcatactgt cctactgaaa aatgtgtatt acgcgaaagg 1560 tatcgatcgc aacctcatgt cggtcgctca gctcacacaa aagggatact ccctgcgaat 1620 tcgggaagga cctgtgtacg gtacgagtga tacgggcaaa cagattgctg aagtgaagaa 1680 atgtccgcta aacggacttt ggtcggtcgg tatcgaggaa gctgctgcct cttttgcaga 1740 aatgaaaact tctactctac gacagtggca tgaacgactt ggtcacgtga gctaccagga 1800 cctaatacgc atgatggaca agaagcttgt cggtggcatg gtggcatcta acaggaaagt 1860 ggatttctgt atgaactgtg ccgaggcgaa gcaagcccgc cgacttaaga acaaacacga 1920 cacgtctgct tctgctccaa cgaatgaacc gggtgcgacc ctgtgtgtag acctaaagac 1980 cgacatgact ccagaccgcc tcggtcacaa acacatcctg actatcgtgg accacgccac 2040 aaattttaac cgcgtctact tgctcagtaa gaagagtaaa gctgaagaac acttggagaa 2100 cttcattagt gagttcgaac ggcagtatga tacgaatgtg aaagtgattc gatgtgacgg 2160 tggtggtgaa tttatcagtg gaagactgaa tcgtttcctc ctcaatcgtg gaattcgcca 2220 tcaactcact gaacgtgaca tgtcctcttc taacggaaag gccgagcgct ttcacaggac 2280 attgatggac tccgctagag ctatgctgtg ggcttctaca ttacctcaga gattctgggg 2340 cgatgccgtt ctttacgcca gctacatccg gaactacttg cctacccgtg cgaatgcaga 2400 ctacgcgtcg cctattgagg ctttatctgg caaagtgcct agtgtttcgc acattttaaa 2460 gtttggatca aaatgtacaa gccatatcgc ccatccctca gagaaatcga ccaagaaacg 2520 tgctgaaaaa ggaattgtca ttggcgttga ccctcaaaag aaagcgtacc gtgtttacat 2580 cccgcgcacc aagcgtgtta tttcgacgac tcacatccag aacattgacc gactggatac 2640 gcgtgctgtg gggcgatata tggacgctac cgacgctacc aacgctgacg aagtcgcaaa 2700 cgaaggtgac agagccacag aagatgtctc tagccctcgc gaagagtctg aactaagcga 2760 agctgatgtg gggagcccag tggagaacca acaactcacc tcacgtgcca ttcaacgtat 2820 ctttggccta aatcgcggta atagtagtcc gaaaggagac gattttcaac tacctcaatc 2880 tttcctcgac gaattcgcta ctcctgtgac tgccttgcta acagtagcgc cccgtgaagg 2940 aaccgcattt gtaactctac tggaatccga tagaactaag gtacctatga cagtcgcaga 3000 agcaatgaac agcccgtact gccgtgaatg gatgcaggcg atgcaggagg agctccacgc 3060 gatatccagc aacgccacgt gggaaattgt cgacattcct tccgatggaa atctgataac 3120 tgcaaaatgg gtgttgagga taaaatttga caacaaagga gaactggaac gattcaaagc 3180 tcggcttgta gcgcgcggct tcaaccagaa atatggagtt gattttgaag agactttcgc 3240 acctgtactg aagatcgcaa gtctacgact gattgtcgct cttgcagcat tgtggcacgc 3300 tattgttcgc caaggagacg tacccaacgc ttaccttcga gctaacctgg atcgacctat 3360 ctacatgcga gcccctgctg gtcttcgagt accaaaaggc aagtgtatgc tgttattaaa 3420 gagtctttac ggtcttaaac agagcgggaa gctctggaac gataccatcc acgcctactt 3480 gctggaactc ggcttcgaga ggagccaact cgacccgtgc cagtactttc gacgatacaa 3540 tggcagcctc accatactcg gtctctatgt cgatgacgta gtagtagtca gccagcgtga 3600 gagcgatagc aactggacaa tgaagaagct gagtggccaa tttcagatca aggacatggg 3660 tcccgccaaa agatgccttg ggatcaacat tgcgcagagc acatcgggca tttctatgga 3720 ccagactaca aacatcgata gcttactggc gaaattagag atggaaaatt gccgtcctgt 3780 gaagacgccc atgaaatcga ctcgaaacct acacagtgaa gactgcgagc cgcattttga 3840 cacgaacaac atgcgagaga ccattggctc gttattgtgg attagtacgt gcactcgtcc 3900 tgatatcact atggcggtga actaccttgc ccgtttcgtt gccgcaccga ctactactca 3960 ttggacagct gtcaaacgaa tcctccggta cctgaaaggg actcgggagc tgaagcttga 4020 gttccgccga ccccaggcac cccaacacag aattggtgtg gccatttaca gcgatgctga 4080 ctgggcaggc gacaaggacg ctaaatctac gtctggtggt ttgcttacca taaatgacat 4140 gctgatctcc tggtatagca agaaacaatc gacagtatct ctatcaacgg cagaagcgga 4200 gtatattgcc gcagcaactg cagtccaaga ctgtttgtgg gtgaaacaat tgattgacga 4260 gctcaaactg agagtcaaag gtgataatgt catcctacac gttgataatc agagcgccat 4320 caaaaacatg gagaatgacg tgacaaccgc ccgcatgaaa cacatcaaca taaagttcca 4380 ctttattcgt gacgctattc gcaatgaggg aatcagcata cgctactgcc caactacgga 4440 gatgaaagct gatatcctga cttaaccact cggtactaca ctgcatggac gcaatgtggc 4500 gatgctcaaa ctgatcatgt catgaccaac atacatctat atcacgcccg tcacatcgag 4560 gaggag 4566 // ID Gypsy-25_PSo-I repbase; DNA; PLN; 4076 BP. XX AC AAQY01000814; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-25_PSo_; KW Gypsy-25_PSo-LTR; Gypsy-25_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4076 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000814; Positions 85148 89223. XX CC Positions [3282-3767] - Integrase core CC 'ACCT' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 2352..4049 FT /product="Gypsy-25_PSo-I_1p" FT /translation="MISYYREMVPNKSALTAQLNKLTSKNAPFTWTPEHAA FT AFQEIKNALARNVWLAFPDYNRTFHVFADASGRQIGGVIIQGKRILACFSR FT SMTETQQKYSTMEWELLSIVELLKEYRTMLLGFPVVIHTDHKNLLFPQENS FT LRVKRWKLLLEEYRLTVKYVPGVLNVGADAFSRLHYDYVKQTTEEELLRIE FT EEEIAIDGAVIKRHQAEDPTTKEILNRLECRGADPDYSLRPPLGNVSLHYK FT KRVVIPSSLRHSLIELYHDYLLHPGAEKQFRSMATFWWPEMEKETLDYVKA FT CVDCKRAKLHGGKQKYGRIPPTPAANNDKPFDVVHVDLVGPFDGDYYCVTM FT IERQFRWLELLMQKGKTSKTTALSFERAWLCRYPRPRFVIHDLGSEFTGDE FT FQLLLSTMAIKDKPITSKNPQANAICERVHLEIMNILRARPDLHGQLEVAL FT DYAAYAIRTSYHSILRASPAQLLFGEDMITRQLHFANWSFLSKQRFAAILQ FT DNERVNMKRLEYFYCVGDHVMLRIPARERKKTDPVAKGPFIVKEVFNNGTV FT LLDTGTTEYRANIRRIFPY" XX SQ Sequence 4076 BP; 1049 A; 1088 C; 1091 G; 848 T; 0 other; cattgaaaat tttcaattaa acccgacctg gttcacccgt cggccaacta caacatcgtg 60 agccgctcca aggacgacga caaggagcgc tacctgacct actcgatcgt cgtgcggcag 120 gcggacgagg agaagggcat caaggaagaa gtcgtgacga agaagatggc gaagttcatc 180 gatggcggcc ccaaggagtt tttagagtgg acgtaccact ttttccagct cgccaagctg 240 aaggagtggg gccccgagga caagttccgc aacaccaaga tcctgctcca gggtgatctg 300 ctggacgcgt tcaaccccta cgaagcaagt gcaagcgacg gcgacgtgcg catgggggac 360 gacgacttca ccaaggcact gtatcaagcc tcaatcgtgg tgatgccggt tgactacggc 420 gagaaaatcc aagaagacct gtgagaaatc cgcaaagtcc gcagcgagac gctcgcggaa 480 ctcagcaagc gcttccggac cttggttcgg atggagcaag tgatggcaat gctaacgggg 540 cagacagcta tgccggagga cgcgctttgt cgcctctaca aacgtggcct tccgaataag 600 tggcagtcga gtacgacacc agcggccaag tgtacaccac tgtctcatca cttgtcccgt 660 attttgagcg catcgagcaa ggcgagctgc gccagcacgg aagaaacaac gggaacgaga 720 acaagaagca tttccggcca gacaataatc gtggacaagg acggcgcagt ggccgtggct 780 accatggcaa caacagtaat cggcagcagc agcgccgtga aggcaaccgt ggacgcgggg 840 acagcagcag tcgcaacgac agccagaaca agtggtgctc atttcaccgt acaacaacgc 900 acaatacgca ggagcgccgc tcgctgcaca accagcagca gcaagaagaa caccatcagg 960 ccgatgctca acgaggcttc agtagcactc gtggccgtgg cggtcgcaat ggaggtggcc 1020 gccgaaacga gttcacccgc gtcgagcagc gcaatcagag ctcaagtgat gacgaatatc 1080 tgtttgtggg gctcaatact gcagaagaga agtcgactcc acccatgcga gcgatgataa 1140 aacttgagca cgggcgcgaa aaatatttgg ccttgttgga tagtggctgc tctcgaagtg 1200 tcatcaacga gagattcctg caagtcgcaa gaaaccagaa taatgcgatg gagaactcta 1260 ccgtgtcctt tcatttggtg aacggaagtg cctcgagaga cggatccctc gagattcgat 1320 tccgcattcc gaaactcaag cgcgagtcgg tgatcattca ccgctttgaa gtgcttctgt 1380 gcgagatgac atggtgattg gttgtgatct gatggctgct ctcaggattg tgctggactt 1440 caagaacggg cgtgtgcttt gggatggcag cgagaggaat atacagacag gagcaactcg 1500 acctggactc gtagaggtac ctgagccgga ccaagtgctc gaaaacgacg acgaaatgct 1560 ggtaggagaa gcaacggcgc tcacaccagt cgatctcatg ccgcagcaca ttgatcaggc 1620 cctgtagcac tgctatctta agcttctcga agaatactac gacagataca gcggacggct 1680 cggccgcatt cgccttcccg actacatctt gcctctgagt gcagattatc agcctttcta 1740 cacgaagccc tacacgactc ctcgcagtca aaaacacgca gcacgcgacg aaattcagcg 1800 tctgctccag ttggatgtga tcgagcagat atacgattcg gaatcggctg caccagcatt 1860 ttttcttgtg aaacccgatg gatcgctacg actcctggtt gatttccgct ggctgaatcg 1920 ctatctgcgt cgctcaccgt atttcgtgcc caaaatccgg aaagccgtgc agcgactgca 1980 ttctgcttgc cgttcggtaa gttccaattc aaacggctcc cgatgggaat atctactgct 2040 cccgacgaat accaggcatg catggagcgc attgttggag atttaccttc cgtgattgtt 2100 tacctggatg acgtgctagt gttctcggag gatgaagagg accatctcga gcatcttccc 2160 attgtgtttg agcgtttcca ccagttcgac atcacgctca acgcgaagaa gtgccataac 2220 cttcgtgaag aagtcgatta cttagggttc acgctgactc gggacggaat ccagccccaa 2280 aagaagaaga ttgaagccat ccagcacatt gcagagcccc gtatgaaaaa gagctccgcc 2340 gctttttagg aatgatttcc tactaccgcg aaatggtacc aaacaagtcg gcgctgacgg 2400 cccagctcaa caaactcacc tcgaagaacg cgccattcac ctggacccca gaacacgcag 2460 cagcgttcca agagatcaag aatgctctag ctcggaatgt gtggcttgcg ttccccgact 2520 acaacagaac ctttcacgtg tttgctgatg caagtggcag acaaataggt ggggtcatca 2580 ttcagggcaa gaggattctc gcttgcttct cgcgatcaat gacagagacc cagcaaaaat 2640 attctacaat ggagtgggaa cttttgtcga tcgtcgagct gctgaaggag taccgcacga 2700 tgctactcgg atttcctgtt gtaattcaca cggaccacaa gaatcttctc tttccgcaag 2760 aaaactccct ccgagtcaag cgctggaaac tcctgctgga agagtatcgc ctcactgtta 2820 agtacgtccc tggagtgctg aacgtgggcg cagatgcatt ctctcgactc cactacgact 2880 acgtgaaaca gacgacagag gaggagctcc tgcgcatcga ggaagaagaa atagccatcg 2940 acggtgcggt gatcaagcgt catcaggcgg aagaccccac gacaaaggag attctaaacc 3000 ggttggagtg ccgtggagct gatcctgatt attctctccg cccaccttta ggcaacgtat 3060 cgctgcacta caaaaagcgt gttgtcatcc cgtcgtctct ccgccatagc ctcatcgagc 3120 tatatcatga ctaccttctt cacccgggtg cggaaaagca atttcgcagc atggctacat 3180 tttggtggcc cgagatggag aaggagaccc tggactacgt caaggcctgc gtggattgca 3240 aacgagcaaa actacatgga ggcaagcaga aatacggccg cattccacct acaccagcgg 3300 ccaacaacga caagcctttt gacgtcgtgc atgttgatct tgtcggtccc tttgacggtg 3360 attactactg cgtgactatg atcgagaggc agttccgctg gctggagctg ctaatgcaga 3420 agggcaagac gtcgaagacc actgcgctaa gcttcgagag agcgtggctg tgtcgctacc 3480 cgcgcccaag attcgttatc catgaccttg gctctgaatt cactggagac gagttccagt 3540 tactgctgag taccatggct atcaaggaca agccaattac atcgaagaat ccccaggcca 3600 acgcgatctg tgagcgcgtt catctcgaga tcatgaatat cttgcgagcc cgaccggatt 3660 tgcacggcca actcgaagtc gctcttgatt atgcagcgta cgcaattcgg actagctacc 3720 attcgattct ccgggcttcg ccggctcagc tactcttcgg tgaggacatg atcacgaggc 3780 aattgcattt tgccaattgg agctttttgt caaagcaaag gtttgcagct atcctgcagg 3840 acaacgagcg cgtgaacatg aagcggctcg agtatttcta ctgcgtggga gatcacgtca 3900 tgcttcgtat tccagcgcgc gagcgcaaga agacggaccc ggttgcaaaa ggaccattca 3960 tcgtgaagga agtgttcaac aatggcactg tcctactgga caccggaacg acggagtatc 4020 gagcgaacat ccgccgcatt ttcccgtatt gattgccatc tcggcatgga ggagaa 4076 // ID Copia-8_PR-LTR repbase; DNA; PLN; 248 BP. XX AC AAQX01003090; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-8_PR_; KW Copia-8_PR-I; Copia-8_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-248 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003090; Positions 3248 3495. XX SQ Sequence 248 BP; 59 A; 61 C; 49 G; 79 T; 0 other; tgttgaggtt aggctcggcc acctcgtgac tcaaataaga catatattat gcattaccgg 60 agtggctatc tgaaaggcaa cttccactct gaaacggttg gcaatggcca acctgtacta 120 tgtttttggc agcagtatag agttttctag cttcgttgtt cttctaactg ctcattgatg 180 ctcactattt cttttaccat tctccgtaca agttctgtca ttcaagcgct aaagctgccc 240 ccgcaaca 248 // ID Gypsy-9_PIT-LTR repbase; DNA; PLN; 358 BP. XX AC AATU01000071; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PIT_; KW Gypsy-9_PIT-I; Gypsy-9_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-358 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000071; Positions 65950 65593. XX SQ Sequence 358 BP; 88 A; 85 C; 91 G; 94 T; 0 other; tgtagtgggt ggcggcttga aagcccaacc acgaccacac tatacagtcg agagtgacga 60 gcaagctgga caaccagcat gtggttgcag tcagccacca gcgtgccagg ttgttgcagt 120 ttacaactgc aagttgcagc tcgtcatctc aagctggtga aggttctagt tagggagtcc 180 ttgctagagg ctgggctatc actgggacgc tggtgatagc tatgtagagc tttggattgc 240 atgcatgttt ctatctcact ttacatttta ccaagacaca agcaatacaa tcggctatag 300 tttaaggaag tgccagcttc cttcgaccgt cttgtattca ctactgcgac ctactaca 358 // ID NHT2_LTR repbase; DNA; PLN; 228 BP. XX AC AY038360; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Nectria haematococca copia-type retrotransposon NHT2_LTR, long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; Long terminal repeat; NHT2_LTR; KW retrotransposon; target site duplication. XX OS Nectria haematococca OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; OC Nectria; Nectria haematococca complex. XX RN [1] RP 1-228 RA Shiflett M.A., Enkerli J. and Covert F.S.; RT "Nht2, a copia LTR retrotransposon from a conditionally RT dispensable chromosome in Nectria haematococca."; RL Curr. Genet 41(2), 99-106 (2002). XX DR Genbank; AY038360; Positions 6 233. XX CC 5bp target site duplication. XX SQ Sequence 228 BP; 63 A; 56 C; 36 G; 73 T; 0 other; tgtcgcatat caccactagg ttcgtgcgac tggatatgaa acgcggccca tactttaggg 60 tcgtatatcc ggtttcacat ccaacttgtc gcatcaagga ttccaatcct aacgatatga 120 gcttaaatag ctctgcctga acacatagct atttaatttc ttttgttctt cagataattc 180 tcatcaattg actagtgcca tcaataatcc ctatacagcc aattatct 228 // ID OSSER repbase; DNA; PLN; 4885 BP. XX AC X69552; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 04-MAR-2008 (Rel. 13.04, Last updated, Version 2) XX DE V.carteri copia-like retrotransposon sequence Osser. XX KW Copia; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; copia-like retrotransposon; OSSER. XX NM OSSER. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-4885 RA Lindauer A.; RT "OSSER."; RL Direct Submission to Genbank (03-DEC-1992)A. Lindauer, RL Universitaet Regensburg, Lehrstuhl fuer Genetik, RL Universitaetsstr. 31, 8400 Regensburg, FRG. XX RN [2] RP 1-4885 RA Lindauer A., Fraser D., Bruederlein M. and Schmitt R.; RT "Reverse transcriptase families and copia-like retrotransposon, RT Osser, in the green alga Volvox carteri."; RL FEBS Lett 319, 261-266 (1993). XX DR GenBank; X69552; Positions 1 4885. XX FH Key Location/Qualifiers FT CDS join(242..3397,3399..4631) FT /product="OSSER_I_1p" FT /note="Osser (retrotransposon):gag,pol (prot,endo, FT RT,RNaseH)." FT /translation="MSERMTYTERLNVANRTTWLIRTKAEIIKLKAGSALV FT NALDESNSTSVERHQTACAVICGLLDDKDLPLLEKHKDARDLLNALDERYK FT GLMEHHVTRLWRDFNAFKMQPNQSLRDYIKRIKDIVEELTACKQPVADANA FT VLIALKGLPSRYDPYVAPYYSTTLMPKTLDELENNLLGVETVIDERASTSV FT LPNTLFAGKGDQDRGNERGGGNSRGGGYRRGNKYGGGNGIRCFQLQGNRSL FT RQGMPKPKKECAKCHLLGHTAEECRNRRRRGGDGGAGNDGGYAAAVVERPL FT FMLELGDSPSRTVAAEMLELESTPAFTVSPSAASGSTETSGPQLRELDATW FT YLDSGAIYHVTPDARSLRDYKPCDPIPLKCGGGEVHYAVGYGDLLVEVVKE FT QTDCYSFHIGNNYYHKQKGPVVIKIRNVYYVPGFKFRLLSLKQLTNNGAQF FT SGSGTSMDVWNSRERWSLYAHCKYSVYSVKVKEKLPRMQSGGPVASVHLVA FT DRARLWHSRFGHLSYGNLARLADEEMVAGLDVTPKKFREVGAAVCEGCVMG FT KHSRKPFPESHSSVGRALERVHMDLAGPMSVESYGGNSYVATFLDEYTGLS FT VVSFLKLKSEAIAVVKSVLTLLENQCGQKVKEVRTDRGREYLNAELREFYG FT ERGIVHQTSAPYTPQQNGIAERLNRTLMEKVRCMLIESGLPSRGWALAMHT FT ANYLRNRSPVHGLKGTPFERFYGQKPDVSDLRVFGCVAYIRVPDHQRRKID FT PVSMKGVFVGYEPESKAYRVLMPDGRQLVSREVKFDERAFGLMSVKGLQYR FT VEVVRDEDEESETGWMQEGEEESEDSSDVQSSISFDVFEGSATVGANDSSG FT AEPASTSGGPVTVGANDSSGAEPASASGGVGTVGANDSSGAGSASASGGVG FT SVGGNNSSSTLSAEGGNEQPRNPPQLRTSTRSNKGVPPVKLNLSAVNGVPL FT TYEEAMKSPEAPMWKQAMDEELASIRANEVWRLEIPPKSVRPLPVKWVFSL FT KKDEHGEIVRYKARLVAKGFAQVEGRDYEEVWAPVSKHTTLRALLSVAARD FT LELHQLDVKTAFLNGELEETVYIQQPPGYVEGEPYLACKLEKALYGLKQAP FT RAWYARLRSELEAMNFTVSQADPGLFYRDVLGERVYLLVYVDDLLIAAKDI FT NIVRQLKDKLKSILMCVTWVRPVCFLGFEIERNRAERTMKVSQKRYAKGLV FT EKYGLEDANGRAVPLSHGTTLHSAGQPLDVRQFRFGELIGSLLYLSVGTRP FT DIAYSVGALARHMSKPTVEHWQAAKGVVRYIAGTAGLGIVFSPKSSNPSLH FT GYCDSDYAACVDTRRSTTGYVFLNAGGAVSWSSRLQPTVATSTAEAEYMAS FT GAATKEALWYRHLARDLQMRVSSVPILCDSQAAIKIINNPISSARSKHIDV FT LHHFVRERVARGEIVFSYCKSADMVADCLTKPLPLPQFKKCIQAMGLR*" XX SQ Sequence 4885 BP; 1110 A; 1085 C; 1492 G; 1198 T; 0 other; atatctgttg tagaactaag tttgtggcgg tcagctctct ggacgaactg gtttccgtat 60 catgccgtgc agatcgcacg ggcatctcta gggcaccttg ccctatatta gcttccgctt 120 atctgtctaa cttgtaacac aacgacgtgc taaggttgta tgcaatacgt gctaagcaac 180 ggcatagtta ccattcacaa caggttatga gccccgcata aggcgggaag caacgataca 240 aatgtctgag cgaatgacct acacggaaag gctaaacgtg gcaaatagga ccacttggct 300 catacgaact aaagcagaga tcatcaagct gaaagctgga agtgcgctcg taaatgcgct 360 tgacgaaagc aattctacct cggttgaacg acatcagacg gcgtgcgccg tcatctgcgg 420 gctactggac gataaagatc tcccgctact tgagaagcat aaggacgcgc gggacttgct 480 caacgcgcta gacgaaaggt acaaggggct aatggagcat cacgtgaccc ggctgtggag 540 ggactttaac gcgttcaaaa tgcagcctaa tcaaagccta agggactaca tcaagcggat 600 taaggacatc gtcgaggagc tgactgcatg caagcagccg gtagccgatg cgaacgcggt 660 cttgattgcc cttaaggggc tcccctccag atatgaccca tacgttgcac cgtattatag 720 cacaacgttg atgccgaaga cgctggatga gctcgagaac aacctgttgg gcgtcgagac 780 cgttatcgac gaacgagcat caacgagcgt actgcccaac accctcttcg ccggtaaggg 840 cgatcaagat aggggcaacg agcgcggcgg tggtaacagc cgcggtggag gctacaggcg 900 tggaaacaag tacggcggcg gtaacggcat taggtgtttt caactgcaag gaaatcggtc 960 actgcgccaa ggaatgccca agcctaagaa ggagtgcgcg aagtgtcatc tgttgggtca 1020 tactgccgaa gagtgtagga acagacgtcg ccgtggtgga gatggaggtg ctggaaacga 1080 cggcggatat gccgccgccg tggttgagcg cccgctgttc atgctggagc tgggggattc 1140 gccatcgcgt acggtggcgg ctgaaatgct tgagctagaa tccactccgg cgtttactgt 1200 gtcaccgtcg gctgcgtcgg gcagtacgga gacgtcaggg ccacagctgc gggagctaga 1260 cgctacctgg tacctggact ctggcgctat ctaccatgtc acgccggacg cacggtcact 1320 aagggactac aaaccttgtg acccgattcc gctgaagtgt ggcggaggtg aggtgcacta 1380 cgcggttggt tatggggacc tgttggtaga agttgtgaag gaacaaactg actgttattc 1440 attccacatc gggaataact actaccataa gcagaagggc ccagtagtaa tcaagattag 1500 aaacgtgtac tacgtgcctg ggtttaagtt tcggctcttg tcgcttaaac agctgacgaa 1560 caatggtgcg cagttttcgg gctctgggac gagcatggat gtttggaatt cccgggaacg 1620 atggtcttta tatgcacatt gcaagtattc tgtttattcc gtcaaagtca aggagaagct 1680 gccgagaatg cagtctggtg gaccggttgc gtcagtacat cttgtagcag atcgcgcacg 1740 actgtggcat tcacgctttg gccacctgag ctacggtaac ttggcgcgac tggctgacga 1800 agagatggtc gctggccttg acgtgacacc gaagaagttc cgagaggttg gtgcggcggt 1860 gtgtgaaggg tgtgtaatgg gcaagcattc taggaaaccc tttccggagt cacactccag 1920 tgtgggccgg gctctagaac gagtccatat ggacctcgca gggccgatgt ctgtagagtc 1980 ctatggggga aatagctatg tcgccacttt tctggacgag tacaccgggc tttcggtagt 2040 gtcgttcttg aagctgaaga gtgaggcaat agctgtcgtt aagtccgtgc tgaccctgtt 2100 ggaaaaccag tgtggacaga aggtaaagga ggtacgtacg gatcgaggaa gggaatattt 2160 gaatgctgag ctgagggagt tctacggtga gcgggggatt gtgcatcaga cctctgctcc 2220 ttacaccccc cagcagaatg gtattgctga gcgcctgaat cgcacgctga tggagaaagt 2280 taggtgcatg ttaatcgaga gtggcctgcc ttcacgtggg tgggcattag cgatgcatac 2340 ggcaaattat ttgcgcaatc gttcccctgt ccatggtctc aaagggacgc cgtttgagcg 2400 tttctatggg caaaagcccg acgtgtcaga tctgcgtgtg tttggctgtg tggcttatat 2460 tcgagtacct gatcaccaac gcaggaagat cgacccggta tctatgaagg gtgtttttgt 2520 gggttacgag ccggagtcta aggcgtaccg tgtgcttatg ccggatggac gacagctagt 2580 cagccgtgag gttaagtttg atgagcgtgc cttcggtttg atgagtgtta agggcctgca 2640 gtaccgggta gaggtggtca gggatgaaga tgaagagtct gagacgggat ggatgcaaga 2700 gggtgaagag gagagtgaag atagttctga tgtgcagtcg tctatctcgt ttgatgtctt 2760 tgagggttcg gccaccgtgg gagcaaacga tagctccggt gccgagcctg cttctacgtc 2820 tgggggtccg gttaccgtgg gagcaaacga tagctccggt gccgagcctg cttctgcgtc 2880 tgggggcgtg ggtaccgtgg gagcaaacga tagctccggt gccggatctg cttctgcatc 2940 tgggggcgtg ggttctgtgg gagggaataa tagttccagt accctgtccg ctgagggggg 3000 gaatgagcaa ccgagaaacc ctccacaact tcgtacctca acgcgttcta ataagggagt 3060 gccgcctgtt aagttgaatt tatctgcggt taatggagtg ccgttgacgt atgaggaagc 3120 aatgaaatcc ccagaagcac ctatgtggaa gcaagccatg gatgaagagc ttgcgtctat 3180 cagggcaaat gaagtatggc gcttagaaat tcccccgaag agtgtacgtc ccctacctgt 3240 taagtgggta ttttctttga agaaggatga gcatggtgaa attgtgcgtt ataaggcgcg 3300 tttggtcgcg aaggggtttg ctcaagtgga aggccgggat tatgaggagg tctgggcacc 3360 agttagcaag catactacgt tgcgtgcttt gctgtctggt tgcggctcgt gatcttgagt 3420 tgcaccagtt agatgtcaag actgcttttc tgaatggtga gctggaagaa acggtttata 3480 tccagcagcc acctggctat gttgagggcg aaccttattt ggcatgcaag ttggagaagg 3540 ctctgtatgg gctgaaacag gccccccgtg cttggtatgc gcgacttagg tcggagttag 3600 aagctatgaa tttcactgtg tcccaagctg atccgggatt gttttaccgg gatgttctag 3660 gagagcgcgt atatttgctg gtctatgtgg atgaccttct aattgctgcg aaggatatta 3720 atatcgtacg tcagttgaaa gataagttga aatccatctt gatgtgcgtg acttgggtga 3780 ggcccgtgtg ttttttgggt tttgagattg agcgtaatcg ggccgagcgt acaatgaagg 3840 tatcacagaa gaggtacgcc aaggggctag ttgagaagta cgggctggaa gatgccaacg 3900 ggcgtgctgt gcctttgtcg cacggcacta ccttgcattc agctggccaa ccacttgatg 3960 tacggcaatt ccggtttgga gagcttattg ggagtctgct atatttgtcg gtgggcacta 4020 ggcctgatat tgcatattcc gtgggagctc ttgcccgtca catgtccaag cccacggtgg 4080 agcattggca ggcggcgaaa ggggttgttc ggtacattgc tggtacggct ggtctgggta 4140 ttgtcttttc tccgaagtcg agtaatccat ctttgcatgg gtattgcgac tcggactatg 4200 cagcatgcgt agatacgcgt cgttcaacta ccggctacgt gtttttgaat gctggtggag 4260 ctgttagttg gtcaagtcgt ttgcagccta ccgtggctac gtcaaccgcg gaggcagagt 4320 atatggcgag tggagcggca actaaggagg ctttgtggta ccgtcacttg gcacgtgatt 4380 tacagatgcg ggtgtcttcg gtacctatct tgtgcgatag tcaggcggca atcaagatca 4440 tcaacaatcc gatttcgtcc gctaggtcaa agcacatcga cgtgcttcac catttcgttc 4500 gcgagcgtgt agcgcggggt gagatcgtgt tttcctactg caagtcggcg gacatggtcg 4560 ctgattgtct gacgaagcct ttgcctcttc ctcagttcaa gaagtgcatc caggcgatgg 4620 gtctgcgttg agaagttttg cctttggagt ttttcagttc ccagaggtct gcccgcgtgg 4680 gagtgttgta gaactaagtt tgtggcggtc agctctctgg acgaactggt ttccgtatca 4740 tgccgtgcag atcgcacggg catctctagg gcaccttgcc ctatattagc ttccgcttat 4800 ctgtctaact tgtaacacaa cgacgtgcta aggttgtatg caatacgtgc taagcaacgg 4860 catagttacc attcacaaca atatc 4885 // ID Copia3-I_VC repbase; DNA; PLN; 2984 BP. XX AC scaffold_156; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia3-VC; KW Copia3-LTR_VC; Copia3-I_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-2984 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 108-108 (2008). XX DR Genome; scaffold_156; Positions 32626 35609. XX CC 'GTTAT' target site duplication CC LTRs are 99% similar to each other. CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX FH Key Location/Qualifiers FT CDS 482..2236 FT /product="Copia3-I_VC_1p" FT /translation="MRHAILHGLPPQYAITVEFAMYLPNLTTPQLVFMLRE FT KENNLKAQAVKSGLVGAVGPGRTARGVRGAAGASGATGANDTCRYCGQPGH FT YVRECPLKQADVSVGLYRSNAFEQPRSTGAGSSGSGNRHRDGGGGGTSGGN FT NSGGDRTRERGRVRRGNGRRSGSDTAGGSSGGGGGGVSSRQNRATVLVVDG FT SGSSSRVVLDSGSPCHLTGDRSLLHNYVPAGAPKQIKWGNNQLADVMGTGQ FT LLLRTRDGETVLLRNVLHVPSSGLTLMSVDLLVTRGCSVTFGTDKSGRRFS FT RVGLPHGGSSITAWSERGHYVRDVDLLAPTKRAVSALGAAEVRAGGGSSAG FT GFAAGASSSDAGGDQPNGVSSNDAGGDQPNGASSSDAGEGQPDGKLQDKLS FT PRAEAGTYLGPERGTAAHRVLIDGKVTVSSDVTFDDDLGGLASQRAGTPFS FT ASPARPGGNDPVGGSTQPVTPPIQVDAPPPVNPASALRPNTCSQRQPLHPP FT LAPISAADNSCGGGGDLGGLPLLSKASGSTDRADFSVPDSSTNGGGNSATS FT LRALLAVAAARGMTVHQVDVKTWRMSKSVYDLKQAPRC" XX SQ Sequence 2984 BP; 573 A; 907 C; 957 G; 547 T; 0 other; ggttatgagc cccgggtaac ggttcccggc ggttactatc tatagttgct tttagcttga 60 gcagggaggc tcgctaggca agcgacatgg gaaaagggtg taagaccgtc ctcttagcgg 120 acgggtctaa ctactcacag tggctaggag acttcagtga tttccttgct acatctaagc 180 tgcggagcta tatgaccaac ccgtcgccac cgggacgcaa tgcgcaagac gctctggagg 240 aagatgccca ggcgcttggc tacctgcgtc tatcctgcga actgccagta aagcagttgc 300 tcaggaactg tcagtcgact ctcgccgcca tgcagctctt acagctgcag ttccgttctg 360 cctctcaggc ccggcttagc ctgctagagc cgcagaagca gctgtacatg cgcgacgacg 420 agacgactgc tgacttcatt cagcgggcgg agcagctccg cagtgacatt atctcggcgt 480 catgcgtcat gcaattctcc acggtctgcc tccacagtac gctattactg tagagttcgc 540 gatgtatttg cccaacttga ctaccccgca gctcgtgttc atgctgcggg agaaggagaa 600 caacctgaag gcccaagcag tcaagtccgg cctggttgga gctgttggcc ctggtcgcac 660 cgcccgtgga gtccgcggtg ctgctggcgc ctcgggcgcc acgggggcca acgacacctg 720 ccgctactgt ggacagcctg ggcactatgt ccgtgagtgc ccccttaagc aggcggacgt 780 gtccgtaggc ctctaccgca gcaatgcgtt tgagcagcca cgcagcactg gcgccggcag 840 cagtggcagc ggcaaccgcc atcgtgatgg aggcggcgga ggcaccagcg gcggcaataa 900 cagcgggggc gacaggacgc gcgaacgcgg ccgtgttaga cgcggcaacg gccgccgcag 960 tggcagcgac actgctggcg gaagcagtgg cggcggcggc ggcggtgtaa gctcacgcca 1020 gaaccgtgcc acggtgctgg tcgttgatgg cagtggtagc agctcacgtg ttgtcctaga 1080 ctctggttcg ccttgccacc ttacaggtga ccgctcgctg ttgcataatt acgttcctgc 1140 cggcgcgccc aagcaaatta agtgggggaa caaccagcta gccgacgtca tggggacagg 1200 gcagctactc ctacggacgc gcgatggaga aaccgtcttg ctacgcaacg tgctccatgt 1260 ccccagctcg ggactgacgc tcatgtctgt cgaccttctc gtgacgcgcg gctgctcagt 1320 cacgttcggc acggacaagt caggccgccg gttctcgcgc gtaggcctgc cgcacggcgg 1380 ttcgtctatc accgcgtgga gcgagcgtgg gcattacgtc agggacgtgg accttctagc 1440 gccgaccaaa cgcgccgtca gtgcgctcgg cgctgcggaa gtcagagccg gcggaggtag 1500 cagcgctggc ggatttgccg ccggcgccag cagcagtgac gccggcggag accagccgaa 1560 cggcgtcagc agcaatgatg ctggcggaga ccagccgaac ggcgccagca gcagtgacgc 1620 cggcgaaggt caaccggacg gcaaactgca ggataagctc agtccccgcg cagaggcggg 1680 aacctacctt ggaccggagc gcggcacggc cgcccaccgc gtcctcatcg acggcaaggt 1740 gactgttagc agcgatgtca ccttcgatga cgacctcggc ggcctggcgt ctcagcgggc 1800 gggcaccccc ttcagcgcca gccccgcccg tcctggcggc aacgaccccg tcggcggatc 1860 tacacagcct gtcacaccgc cgattcaagt ggacgccccg cccccagtca acccagcgtc 1920 cgctctccgc cctaacactt gcagtcaacg gcaaccgctg cacccgccgc tggccccaat 1980 cagtgcggcc gacaacagct gcggcggcgg cggagatttg ggtggactac cgctgcttag 2040 taaagcgtcg ggtagcacag atcgcgctga ctttagcgtg cctgacagca gtactaacgg 2100 cggaggcaac agtgcaacct ccctgcgggc acttctggct gtggcagcgg ccaggggtat 2160 gacggtccat caggtggacg tcaaaacgtg gcggatgtca aagtccgtct acgatctcaa 2220 gcaagccccg cgctgctgat acgagaaact ggtggcggtg ttgggcaaac taggctatgg 2280 gccgtctatg tccgaccccg cgctattcgt caagcgcggg tccgacagct caatctatgt 2340 gctcgtgcac gttgacaaca tgctggtggc ggcggacaac ttgcaattgg tcacggccgc 2400 caaagcagcc atcaccggtt gcttcgcagt gtgtgatttt ggataaacac gctcagcctc 2460 ggcaacaacc ccatcacgtc ggtgcgctcc aagcacatcg tcgtgcacca ccacatcgtg 2520 cgcgagaggg tcgcgcgtgg tgaggtgaag ctcagctatt gcaccaccga cgacatggtg 2580 gctgacatcc taaccaaggc actgggcgag gtcaagttcg tgcgctgccg cacagcgctg 2640 ggcgtcactt agaccgccag aggaggagtg ctgagggctt tgaggacttg ttttgagcta 2700 gactttaagg gggtgctgag ggggcgtgag caggcgcccg aatgggcagg ttaatgcccg 2760 aaggggcgcc gtaggcagtg cgtttggtgt tgtacggcac tgttttccct gtttgtgttt 2820 gtacagcagc gccagaccgc atagccatca ggctgaaggc tggcaagctg cgtttgtatc 2880 tgctgagtgt tgagcagtcg gcctggaccg cggacttgtc ggccgatcta gctcgtcggt 2940 actagcaatt tgtagtaagg cccctagtgc gacacgaggg ggcg 2984 // ID Copia-23_PIT-I repbase; DNA; PLN; 4713 BP. XX AC AATU01002123; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-23_PIT_; KW Copia-23_PIT-LTR; Copia-23_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4713 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002123; Positions 293150 297862. XX CC Positions [2220-2507] - Integrase core CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 15..1064 FT /product="Copia-23_PIT-I_2p" FT /translation="MTRATDEAIGDGAPAPTSTVPVASRERTGMADDTEEM FT STAVAHERGSGNNADANAPATGGTAAELMTLLRGVAGQLEQLEESQTKLKE FT SHETLEKQLDDQDARRARLNRPSTPPMNSSLFASGLGRGTRMHIDSLGGSP FT QTPLTVTPRRPAAAPQYFGHQQPGYGMPMSELQRLYAAAHGAQPAAPAPAP FT APPRDGRAQAGGEHFQQQNQGVRYPDARQKKLAIRPFDGKELYVGLGSGFL FT EWGRRFERQVALAQSACGFARPEDVKVDLLGHYLAGTAERYYNKQVDAWWT FT QLPTLQYVMERMLETFKTNITPAQAMKLLTAPKEGNRSWPEHYMYLVAVSE FT ACGGGAD" FT CDS 1046..2239 FT /product="Copia-23_PIT-I_1p" FT /translation="MRWRGRLNNIVQYASADLRTVLMAKVDGARADYLQQA FT EELAHFAQAWELEPAKHKNLGREVVGAVAERRGKETRTCHECGKVGHLRAA FT CPERTRGGGRKPDLTLSVGETSDESDAMWILDSGSSRHFVSDASWLDDVEE FT YLDECVQPDGNPLKISKKVTLTLRVMASGTEQIVKLMDVYYAENVVHNLIS FT YGELDKKGYTRTYRNGRRVVAGVDGGRVAFDVDLRHGVLVVPAVVERKGGA FT PSGVIMAALDQAEAEMGSGDVQKDTLVEFHKRFGHLSYDAVEKLARDPSSG FT IVITDHRRVNCLTCAQGKQTKNRQSQKDTGDHSPIDRVGGVICSDLKGPMT FT PRDRLNNRYMINFVDHKSNYCRVFPGRTKDAAAKQFEHFLKAFRLQDSCTD FT NGLG" FT CDS join(2163..3044,3048..4601) FT /product="Copia-23_PIT-I_3p" FT /translation="MLPPSSSSTSSKRFDCRIHVLITDSGEEYQNVDLFCK FT KTGVVRQRSEARNQASNGKAERMHRTIMSMARCMIFACGLPLNFWGDAEQY FT AAYILNRSPTNSNPGRASPLKILTKQTPALGEIVVFGSPCTVYRDPRNKNF FT SQRAQHGMIVGIGEETKGYRVYLPKDRVVVTTQHVKNIETLNKTQNEQVQR FT LYLQDDDSAVVDESTSGSASAAEAATTESASARSRRGKKGKKRSKQKKTWQ FT RERHETRSVARKAAENTDESVQREEQETRVVNNVMEVDPRSYREAMRSQWR FT EKMKAMKEELEALEENGVWKVTRLPNGARALHTKWVFKTKRDVAGFIERLK FT ARLVACGNEQEFGVNYGITFAAVIDMCSVKLILCLARKWRVPAGHGDVPNA FT YVKAEKEPELDIYIRLPQGMVISEEIKKQLSATSDDELVLELKKALYGLKQ FT AGRLWSKLLHQKLVDSGFEQSLTDMCVYYRRKQGVLVVVGVYVDDLLVTGT FT DQDAVNAFFGELSDLSVKDLGVVSKFLGTRVTYDDENGYDLDQEVAITDIL FT NEYQMEAARPVRTPIGLEWNDLPLDAGETLPLSGDGSAVTVAKFQSLVGSL FT MWVARCTRPDIAFAVHKASRRTHNPTMADWRLAKRIVRYLSGTKGLRLQMK FT GHRSSEEPLEVVAYSDADFAADKQDRKSVTGGLVTVDGMPVSWICKKQGGV FT SLSTMEAEYTAASVMAAELLGVRELLGELAVEYVQPMPLRVDNQAALKQLG FT GEGASAKAKHIDVRIKFVGSYTKRGILGPEYRESEHMPADLMTKALSASRV FT ADLRVEVGLH" XX SQ Sequence 4713 BP; 1174 A; 1156 C; 1576 G; 807 T; 0 other; ggtcttgagc ccaaatgacc agagccacag atgaggccat cggcgatggc gcgccagcgc 60 caacgtcgac agtgcccgtt gccagtcgcg aaaggaccgg catggccgac gacacagaag 120 agatgagcac cgccgtggcc cacgaaaggg gtagcggcaa caacgccgac gctaatgcgc 180 cggcgaccgg gggaaccgcc gcagagctga tgacgctctt gcggggcgta gcgggacagc 240 tggagcagct tgaggagtcg cagaccaagc tgaaagagtc gcatgagacg cttgagaagc 300 agttggacga tcaagatgca aggcgtgcgc gcctgaatcg cccttcgaca ccacccatga 360 actccagtct gtttgcgtct ggactcggcc gcgggacaag aatgcatatc gactcgttag 420 gtgggtcgcc acagacgcca ctcacagtga cgccgcgtag gccagcagct gcaccacagt 480 acttcggaca ccagcagcct ggctacggca tgccaatgtc tgagttacag cgcctgtacg 540 ccgcagcgca cggagcgcag ccggcagcac cagcgccagc accagcgcca ccacgagatg 600 gtcgggcaca ggctggaggc gagcatttcc agcagcagaa ccaaggagtc cgctacccgg 660 acgcgcgaca gaagaagcta gcgattcggc cattcgacgg aaaggagttg tacgtaggac 720 tcggatctgg attcctcgag tggggtcgac gctttgagag acaagttgcg ttggcgcagt 780 cggcatgtgg gttcgcgcgg ccggaagatg tcaaggtgga tctgctgggg cattacctag 840 cggggactgc agaaaggtac tataacaagc aagtagatgc ctggtggaca caactgccca 900 cactgcaata cgtcatggag aggatgctcg agacgttcaa gaccaacatc acccccgcgc 960 aagcaatgaa gttgctcact gcgccgaagg aaggcaatag atcgtggccc gaacactata 1020 tgtacttggt cgccgtatca gaggcatgcg gtggcggggc agactgaaca acatcgtgca 1080 gtacgcgtcc gcggacttgc gtacagtgct aatggccaag gtagatgggg caagagcgga 1140 ctacttgcag caggctgagg agttggcgca cttcgcgcaa gcctgggaat tagaacctgc 1200 caagcacaag aatctcggca gagaagtcgt gggcgccgtg gctgagcgcc gcggcaagga 1260 gacacgcacc tgccatgagt gcgggaaagt tggacatctg cgcgcagcat gtcctgaacg 1320 gacgcgaggg ggcggcagga agcccgacct cacgctgtct gtaggagaga cgtcggacga 1380 gtccgacgcg atgtggatct tggacagcgg gtccagtcgg cacttcgtga gcgatgcgtc 1440 gtggctggat gacgtcgagg agtacttgga cgagtgtgta cagccagacg gaaatccact 1500 caagatcagt aagaaagtaa ctctcacgct gcgcgtcatg gcgagcggga cggagcagat 1560 cgtgaagctc atggacgtgt attacgccga gaacgttgtg cacaacttaa tctcctacgg 1620 cgaacttgac aagaaggggt atacgcggac atacagaaac ggacgacgag tcgttgccgg 1680 tgtagacgga gggcgagtag catttgacgt ggatctgcgg catggcgtgc tagtcgtgcc 1740 tgccgtcgta gagcggaaag gaggagcccc atcgggagta atcatggcgg ctcttgatca 1800 ggctgaggcc gaaatggggt cgggtgacgt gcagaaggac acgttggtgg agttccacaa 1860 gaggtttgga cacttaagct acgacgcggt tgagaaactt gcacgggacc cgagctcggg 1920 catcgtcatc acggaccacc gccgcgtcaa ctgcttaacc tgcgcgcagg ggaaacagac 1980 gaagaaccgg cagtcgcaga aagatactgg ggaccactcg ccgatcgatc gagttggtgg 2040 agtaatctgc tcggacttga agggtccgat gacgccgcga gatcgtctca ataaccgcta 2100 catgataaac ttcgtcgatc ataagagcaa ttactgcaga gtgttcccgg ggcgaacgaa 2160 agatgctgcc gccaagcagt tcgagcactt cctcaaagcg tttcgactgc aggattcatg 2220 tactgataac ggactcgggt gaagagtacc aaaacgtaga cttattctgc aagaagaccg 2280 gggtagtgcg tcagcggagc gaggccagaa atcaagccag caacgggaag gctgagcgca 2340 tgcatcggac cataatgagc atggcacggt gcatgatctt cgcctgtgga ctgccattaa 2400 acttttgggg ggatgctgaa cagtacgcgg cctacattct gaacaggtcg ccgactaact 2460 cgaacccggg gagagcttcg ccgctgaaga tactaacgaa gcagacaccg gcactaggcg 2520 agatcgtcgt ttttggctcc ccgtgtactg tgtatagaga cccgcggaac aagaatttct 2580 cgcagcgtgc ccagcacggc atgatcgtcg ggattggaga agaaacgaaa gggtacagag 2640 tttacctacc aaaggaccgc gtggtggtca caacacaaca cgtgaagaac attgagacgc 2700 ttaacaagac ccagaacgag caagtgcagc ggctgtacct gcaagatgat gacagtgctg 2760 tcgtggatga gtccacgagt ggatctgcga gcgccgctga ggcggccacc actgagagtg 2820 cgtcggccag gagcagacgc gggaaaaagg gaaagaagcg atccaagcag aagaaaacct 2880 ggcagcgaga acgtcacgag acacgttcgg tcgcaagaaa ggctgcggag aacacggacg 2940 agtccgtgca gcgggaggag caagaaacca gagtggtaaa caatgtgatg gaggtagatc 3000 cgaggagcta ccgagaggca atgcgcagcc agtggcgtga gaaataaatg aaagctatga 3060 aagaggagct cgaagcactc gaggaaaacg gagtgtggaa ggtcacgcgg ctacccaatg 3120 gggcgcgtgc attgcataca aaatgggttt tcaagacgaa aagagatgtt gcaggattca 3180 ttgaacggct gaaggcgcgg ctcgtggcct gcgggaacga gcaagagttc ggtgtgaact 3240 atgggatcac ctttgccgcg gtgatcgaca tgtgcagtgt gaagctcatc ctgtgcttgg 3300 ccaggaagtg gagagtccca gcaggacacg gggatgtacc aaacgcctac gtcaaggcgg 3360 agaaggagcc ggaactggac atctacattc ggttgccgca gggaatggtc atatcggaag 3420 aaattaagaa gcagctgagc gccacgagtg acgacgagct ggtcctcgag ctgaagaaag 3480 cgctgtatgg actaaagcag gctgggcgac tctggagcaa actgctccac cagaagctgg 3540 tagactcggg attcgaacag agcctgacgg acatgtgcgt ctactatcga cggaagcaag 3600 gagtgctggt cgtcgtaggc gtctatgtgg acgacctgct agtcaccggc acggaccaag 3660 acgcggtgaa cgcttttttt ggtgagctat cggatctgtc tgtgaaggac ctgggagtgg 3720 tgagcaagtt cttggggacg cgcgtcacgt atgatgacga gaatggatac gatctagatc 3780 aggaggttgc gatcactgac atcctgaatg agtaccagat ggaggcggcg cggccggtgc 3840 gcacgcctat tggcttggag tggaatgacc tgccattgga tgcaggcgag accttgccgt 3900 tgtcaggaga cggtagcgca gtgactgttg cgaagtttca gtctttggtc ggaagtttga 3960 tgtgggtggc gcgttgcacg cggcccgaca ttgcgttcgc tgtgcacaag gcgtcacgcc 4020 ggacgcacaa cccgacgatg gcagactgga gactggcaaa gcgcatagtc aggtacctgt 4080 cgggaacgaa gggcctgcgt ctgcagatga agggacacag gagttcggag gagccgctgg 4140 aggtcgtcgc gtacagtgac gcggacttcg cggccgacaa gcaggacagg aagtccgtga 4200 ccggaggact cgttactgtg gatgggatgc ctgtcagctg gatctgcaag aagcagggcg 4260 gtgtatcgct gtccacgatg gaggcggagt acaccgcggc ctcggtgatg gccgccgagt 4320 tactaggggt tcgagaactt ctaggcgaac tcgccgtcga gtacgtacag ccgatgccgc 4380 tgcgagtgga caatcaggca gcgttgaagc agttaggcgg tgagggcgcg agtgcgaagg 4440 caaaacacat tgatgtgcgc ataaagttcg taggctccta cacgaagagg ggcattctgg 4500 gccccgagta tcgtgagagc gagcacatgc ccgccgactt gatgacgaag gcactgagtg 4560 cgtcgagggt ggccgacttg cgagtcgaag tggggctgca ttaggcctcg agaggcaaat 4620 gtagcgaagg tggaaaatga gagcgctggt agggatgctt gacgttgccg gcgaggagga 4680 gtgctgaagt agggaaggtc cgaaccagag atc 4713 // ID Gypsy6-LTR_VC repbase; DNA; PLN; 777 BP. XX AC scaffold_80; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy6-VC; KW Gypsy6-I_VC; Gypsy6-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-777 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 134-134 (2008). XX DR Genome; scaffold_80; Positions 248253 249029. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 777 BP; 164 A; 209 C; 199 G; 205 T; 0 other; tgttgtatcc tgtaaaggtt ttcctacaac ggtttgagcg cctatttcta actgtcggtg 60 gttagctcgt ccactccgat ttaccaaact ccaatattac taactaactc ccgtcaattc 120 cgcggttggt gattacaggt attaactaat actgatatta gtttaattgc ggctactgtt 180 agctgcggcg gctaagcgac tactgttagt cgtccgccat ctaaatgccg cactgttgcg 240 gaagtccatg ggcgccggcg gatcaaacga ctactgttag tcgtccgcca ttcaagtgcc 300 gcactgttgc ggaagtgcat gggcgacggc ggctaagcga ctactgttag tcgtccgcca 360 tccaaatgcc gcactgttgc ggaagtccat aggcgccggc ggatcaaacg actactgtta 420 gtcgtccgcc attcaagtgc cgcactgctg cggaagtgta tgggcgacgg cggctaagcg 480 actactgtta gtcgtccgcc accttaatgc cgcaccactg cggaagtcca tacctacgta 540 tgggcggggg ttttacttac gtaaagctgg gacctgcgtc ccagtttcgt ctgaccgagc 600 gagagtagtt cctgcgaact atggcttctg gattcggcgc cgcccagtcg tactaggaat 660 ccttatcggc gcgaggccca agtggagtca ctgatgacta cttattcaag acacttgtct 720 caatcggtat ctttcgatgc ccccattcta tggttgtgtc gtctgaactc tacaaca 777 // ID Merlin-1_Smo repbase; DNA; PLN; 1514 BP. XX AC . XX DT 16-MAY-2011 (Rel. 16.05, Created) DT 16-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW Merlin; DNA transposon; Transposable Element; Merlin-1_Smo. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-1514 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 1514 BP; 484 A; 229 C; 290 G; 511 T; 0 other; ggaagaaatg cataatacag cacccctcac tcttacgtgg ttgccccttt gccacgctca 60 ctcctcgctt cctccgtggc gcgcttagtc acgcccagct ctgcacccta aatgtttaac 120 gactaactct aaattagtaa cgttaaactt taattagtag atgttgttaa cggatatgtt 180 aacgactata attttataat tagccagtga atgaacggct ataatttata agtatataac 240 ctacgattgg tttaggtctt tcctcattgt gttttatgtt tgtgctcctt atattttctt 300 tcttatttta ttcattctct ttagtattat ggctagattg gaatatgtag atcatgctca 360 agatagtatt ctttcttttt ctgatcttat tgagagaact aatagtaagg taaattcttt 420 tagtttttgt attatggttg gtcttcttcc acaagagaga gaatgtgaaa gatgccatca 480 accaatgaga tatcgatctg ataatcgagg ttgtaaagat ggtttaaagt ggaattgtaa 540 aaattgcaat accacaagat ctcttagaac taatacatgg tttgcaaata gtaatctcac 600 atttgctcaa atgcttagag tgatgtattg ttggtgcatt aaaatgccac aagatcaagc 660 tcgtattgag tgtagtatta aaagtgagca tacgacaaca aattggtaca acttttgtcg 720 tgatatttgt gttatcacat tacaacgagg tagtcaaaag attggtggtc caggaagaat 780 tgtggaaatt gatgaaagta agtttggtaa gtggaaatat aatcgtggta gaagagtaga 840 aggtcaatgg gtctttggag gaattgaacg tgattcagat cgaatgttta tggttccggt 900 ggccgatcgt actgcacaaa ctttaactga tatattatat acatatgttg aaccaggtaa 960 gttctatttc tattattatt cttaactaat aattataatt aatttgttag gaacaattat 1020 atatagtgat tgttgggctg gttatgattc agagtggttg aatcaattga acttcactca 1080 ttatacagtc aaccactccc agaattttgt tgatcccgtg actggagttc atacaaatcg 1140 tattgaatca acatggaatg cagtgaaaag atcccttcct cgctatggta caacaaaagg 1200 attatacagc tcttactttc aagaatatat ttggcgaaaa atatatattg aaagaaagga 1260 agctgcattt aatattctat gcagtcatat taagctatac aatcaagata atgctgttat 1320 agtagaataa ataatatatt tgattttgta cttttaaata cttaaaaata gttgaaaata 1380 atatactaga acaatcttta atttatagta atgaggtggc atgcgcatgt aagcaatgag 1440 gtggcatgca aatccaaata agcaaatggg gcccacccta aataaggggg ggtgctgtat 1500 tgtgcattct accc 1514 // ID Gypsy-9_PPa-LTR repbase; DNA; PLN; 1251 BP. XX AC . XX DT 14-DEC-2009 (Rel. 15.07, Created) DT 14-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-9_PPa-I; KW Gypsy-9_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1251 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 968-968 (2010). XX DR [1] (Consensus) XX SQ Sequence 1251 BP; 385 A; 149 C; 302 G; 415 T; 0 other; tgtcgtactg taattactta cagtatgtaa aaattagtga aaacatgtaa tatgtttata 60 agtcttaatg tgagttagaa tagttagtat gttaatttaa aatgaattga aataagaaaa 120 attatttgga agttaatcta gtttgatcat agagtttata ttatatagga tttagatagt 180 tagtataaag attaagggaa gggaggagtt aaaagatgaa aatataacta gaaggaggct 240 tattgggaag gatgaaagta aggcatggtt ggatgaaggc aaggggtgaa gaacttcatc 300 cctattggtc gaataccatg cccaatgggc tttgaggagg ctgcccgagg ccatattagg 360 aattagggtt cctctttcga ggccattcga gcttttgagg ctagggtcag aaggtttagg 420 gttttgggta taatttgggt gaagattttg tgtgatttcg agtttttatg gaaaagatat 480 gaatgttcaa agataaggtg tcaatttcgt acctactgtc acttcttttg ggcatcacat 540 acgaatacgg agagcaacgg aagatcggcg actggatttg gagggagcat tttctcggct 600 acacattcta cttactgtat agtgaattct aagattgggt gaaggagtta tgaggcgttg 660 aagacagcac ttgtaatttg aaggcagtaa gtatatcgtt ttgttgctag ttatgggtga 720 agccatatct tgagtttctg gacgaatttt tggctcaaaa tttccacaag tgtgtgtaat 780 tgggttaaga agctttagat caaagtttca tagtatttga ataattactt tgtgagatat 840 gaaggaagtt gtacacgggt gtaaaaaagc tagggtttga agctacagtt agggttttca 900 agatatcaca agatccaaga cgaatttacg gttgaatttt ggtgtggtag ttgctaaaga 960 tatatcagta ctccatgtaa aatttggagt tgtttagacg gttagatcgt aagttatgag 1020 ctgttgaact tcgggaaaaa ttcctcataa ggatatataa gttttttata acaccttatc 1080 aagtattttg gtgttctttg gattttaagg cttgtatatt gatgtaattg ctccaaagga 1140 gaggagttta tatatataaa attgttaccc ttatatttca aacttgattg agtatttagt 1200 gacagccaga agcccagcgc tttcttgagg caaactctct ctaccccgac a 1251 // ID TE-1_PPa repbase; DNA; PLN; 352 BP. XX AC . XX DT 22-DEC-2009 (Rel. 15.07, Created) DT 22-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Non-autonomous transposon - consensus. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW TE-1_PPa. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-352 RA Bao W. and Jurka J.; RT "Non-autonomous transposons from moss."; RL Repbase Reports 10(7), 1044-1044 (2010). XX DR [1] (Consensus) XX CC the 3'-end is similar to those of Helitron2_PPa and CC Helitron3_PPa. XX SQ Sequence 352 BP; 121 A; 69 C; 72 G; 90 T; 0 other; tctcttatat aaaacagctc agggggataa accaatggga taaaccagag gagacaaaaa 60 ccatctctga ttggctgcat atctcattgt tttcatcaaa agtgaagcaa taactcaact 120 tttgatcaat cagagatcaa aatctgcatg ttgttgctgc agattgccaa gagtagcact 180 gcaagatcac taggcatgga gcttggaagc accacaacgt ggaacggcat ggaacatagt 240 ggaacgacat gcaacatgga gtttcacgtc atatgaagct tcaaacaaaa gattaattta 300 caacacatag tttacaatgt ttttttgtgg ccaacggcat aggtttccac ta 352 // ID Copia-34_PIT-I repbase; DNA; PLN; 5194 BP. XX AC AATU01001040; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-34_PIT_; KW Copia-34_PIT-LTR; Copia-34_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5194 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001040; Positions 38744 33551. XX CC Positions [1828-2337] - Integrase core CC 'GCAAC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 15..1880 FT /product="Copia-34_PIT-I_2p" FT /translation="MSTDAKSGGGLEKFKGKSYTMWKDKLLTHVNQLDHQY FT QRKQLEKGQPEAKVLMADFLRGCPDKPPSPTNTMDEQEALSIKWDMMHWMR FT GRGDLQNLINQVLPYFFLNTLPDVVSSMDPSEVIRLLEKDFGQGDAAGLID FT LMRAWAKLTRGPWRDLRSLFAQLKKAKSEINRKTKKLFDEEMVTESWVCVE FT VLSLLPSEFWASSISLKKGDFNIDQVESALRKIFGDKSKKEVGLMDKSHPI FT TISNVRVNGGQKRKMGGNEGGKCFYCLQTGHFKANCPTMAADRDPNRSGGP FT LFRTDVNTAPGAKKAKKGRTTAINTITAVVKDGKTHVNKDGKTLLEECMED FT EAMDDIESLNPALHEDFEDMGNSTQTPNEALQDMDQLEDEVRKQNASYLKT FT LKRLTVTDDMWVVDTGAGRAITSDRSWFTGKLRPGQNTVFTYGNGTVSHSS FT LKGSIKLSVLTPKGRLSDISLTDISFDRQCDSNLLSSYYLARHGYRHLQSK FT SGDFLFFLEKNFKLLFAAVAIGEVYYLPSAKPARKSAFNAQLSKVGDILKE FT WHLRLGHVGKERLIRSMSNQKLKGLPNLSYSELKKVSFFCSTCASMKDRRM FT SYRNLIGNKSTAHSAHGLYWKVEG" FT CDS 1855..3669 FT /product="Copia-34_PIT-I_1p" FT /translation="MDSTGRLRVNGLYGSFGYRYALAVVDDATAYKWYFAV FT KSLKEVRGKIRTLLKQLEVQFPLFKVRRIRTDGGTEFLNSEVSKLCSKLGL FT DFQSSNVESQEENGSAERAHQTMMAGVRCTLRGANMPAKWWPEALLYIVDI FT TNRLPMARLGMKTPYELLHRKQPSGLAFRIWGSKCFAHVPKSKRKDPKLGD FT RAIECKLLGLSPKYKGYRLLDVKANKYLIARDVKFSLTGTEAMIRRSFPNE FT DSSIDHEEVHAIGQLGKQPRGTVAGEVPADESSEPVTDPPTSRLVGDKRQA FT TSDVRRSKRQRTRNVRLSDYVTQLNLVASDKPDRIPVPKSIKEARLSPCAK FT QWESAIKAEYDALLSNNTWELVPLPNGRRALGCHWLFDVKYHADGSVDRFK FT ARLVVQGNTQLYGIDYKKVFAPVARYESLRVLLALATILGLELHQMDVSTA FT FLNGILHESIYMRQPLGFRHGTGHLVCRLKKSLYGLKQAPRIWYAVLNEFL FT TSLGFFRCKKEHCLYLRRWDIKGIEHILIICVYVDDLTIAGSHLSSISDLK FT AKLSAKFTMKDLGELHHLLKMEIKRDSQKKTLRISQQKYINDLLVKYQMRD FT CSTEPTP" XX SQ Sequence 5194 BP; 1560 A; 1104 C; 1308 G; 1222 T; 0 other; tttcaagtac tccgatgtcc accgatgcta agtctggcgg tggactcgag aagtttaagg 60 gcaagtcgta cacaatgtgg aaagacaagc ttttgacgca cgtcaatcaa ctcgaccatc 120 agtaccaacg caagcagctg gaaaagggcc agcctgaagc gaaggtgctc atggcggact 180 tcctgcgggg atgtccggac aagccaccat caccgaccaa tactatggat gagcaagagg 240 cgctctctat caaatgggac atgatgcact ggatgagagg aagaggagac cttcagaacc 300 tcatcaacca agtcctccca tacttcttcc taaacacgtt gccggacgtg gtgtcctcaa 360 tggaccccag cgaagtgatt cggctcctgg aaaaggattt cggtcagggt gacgcggctg 420 gcctcatcga cttgatgaga gcctgggcta agttgacacg cggcccatgg cgcgacttaa 480 ggtcgctgtt cgcgcaactg aagaaggcta agagcgaaat caatagaaag acaaagaagc 540 tgttcgatga ggaaatggtg acagagtcct gggtgtgtgt cgaggtcctt tcactgctgc 600 ctagcgagtt ctgggcctct tcgatctcgc tgaagaaggg cgatttcaat atcgatcagg 660 tcgagagcgc actgcgcaag atatttggag acaagtccaa gaaagaagtg ggtcttatgg 720 ataagtccca cccgatcacc atcagcaacg tgcgggtgaa tggtgggcaa aagcgaaaaa 780 tgggtggcaa tgagggtggc aagtgcttct actgcctaca gacgggacac ttcaaggcga 840 actgcccgac tatggctgcc gacagggacc ccaaccgttc aggtggaccc ctcttccgca 900 ccgacgttaa cacggcacca ggtgcaaaga aggccaaaaa gggcaggacg accgctatca 960 acacgatcac agcggttgtg aaggacggca agacgcacgt caacaaggac ggaaagacgc 1020 tgttggagga gtgcatggag gatgaggcta tggacgacat tgagagttta aacccagccc 1080 tccatgagga ttttgaggac atgggtaact caacccagac cccaaatgag gctctccaag 1140 atatggacca gctcgaagat gaggtacgta aacaaaatgc atcgtactta aaaacgttaa 1200 agcggttaac cgtaaccgat gatatgtggg tggtcgacac tggtgcaggc cgagctataa 1260 catcagacag aagctggttt actgggaagc tccgacctgg ccagaatacc gtgttcactt 1320 acggtaatgg aactgtttca cacagctctc ttaaaggatc aataaaactt agcgttttga 1380 ctccaaaagg aagattaagt gatatatcat tgacagatat ttcgtttgac cgacagtgtg 1440 atagcaactt actcagttca tattaccttg ctcggcacgg ttatagacac ctacagtcta 1500 aatcaggtga ttttctgttc tttttagaaa agaactttaa attgctgttt gcagctgtgg 1560 caataggcga agtctactac ttaccgagcg cgaaaccagc tagaaagagt gcttttaatg 1620 ctcaactaag caaagttgga gacatactaa aggaatggca tctgagatta ggccatgtgg 1680 gcaaagaacg cctaattaga agcatgagca atcagaaact aaaggggtta cctaacctct 1740 cttactcaga actcaagaaa gtttcattct tttgtagtac atgcgcctca atgaaggatc 1800 gcagaatgtc ctacaggaat ttgataggaa acaaatcaac agcacactct gcacatggac 1860 tctactggaa ggttgagggt taatggactg tatggttcct tcggttatcg gtatgccctt 1920 gcagtggtag atgatgccac tgcctataag tggtattttg cagtaaaatc cttgaaagag 1980 gttcgaggca aaatccggac cctcttaaaa cagttggaag tacagtttcc cttatttaag 2040 gttcgcagaa ttaggacaga cggtgggact gagttcctaa acagtgaggt ttctaaactg 2100 tgttctaaac tcggtctaga tttccaaagc tctaacgtcg aatcccaaga agaaaatggg 2160 agtgctgaaa gagcacatca aaccatgatg gctggtgtgc gctgtacact tcgaggggcc 2220 aatatgccag caaagtggtg gcccgaagct ctactctata ttgtcgatat tacaaaccga 2280 ctacctatgg cgaggctcgg gatgaaaacc ccgtatgagc tgttacatcg gaaacaaccc 2340 agtggtttag catttaggat ctggggctca aagtgtttcg cacatgttcc taaatcaaaa 2400 aggaaggacc caaagctggg tgatagggca attgagtgca agcttttggg actttcacca 2460 aaatacaaag ggtaccgtct tcttgatgtg aaggcgaaca agtatcttat agcgagagat 2520 gtgaagttta gtttgactgg tacagaggct atgatcagac gctcgtttcc caatgaggac 2580 tccagcattg atcacgaaga ggtacatgct atcggtcagc taggcaaaca accaagaggc 2640 acagttgcag gtgaagtgcc ggctgacgaa agctcagaac cggtcactga cccaccgaca 2700 tcccgactag tgggagataa gcgacaggct accagtgacg tccgtcgatc aaaacggcag 2760 cgaacacgca acgtaaggct tagtgactac gtgacccagc taaatcttgt agcgtcagat 2820 aagccggaca gaatccctgt tccgaaatcg attaaggaag cgcgactaag tccttgcgct 2880 aaacagtggg agtctgcaat caaagcagaa tatgatgccc ttttgagtaa taatacatgg 2940 gaacttgtac cattacctaa tggacgcaga gcccttgggt gccactggct gtttgatgtc 3000 aagtaccatg cagatgggtc tgttgaccgc tttaaggcta ggctggttgt tcagggtaac 3060 acacagctat atggcatcga ctacaagaaa gtattcgctc ccgtggcccg ctatgagtct 3120 ttgcgggtgc tgttggcatt ggccacaatt ctaggactgg agctacacca aatggatgta 3180 tctacagcct ttctaaatgg tatcctacat gaaagtatct atatgaggca gccattggga 3240 tttcgtcatg gcactgggca ccttgtatgt aggttgaaga aaagcctgta tgggttaaaa 3300 caggcaccca gaatctggta tgccgttcta aatgagtttc ttaccagctt aggatttttt 3360 agatgcaaga aagaacattg cttgtatcta agacggtggg atatcaaagg gattgaacac 3420 attctgatca tatgcgtcta tgttgacgac ctgacaattg cgggctcaca tctgagctcg 3480 atcagcgatc tgaaggctaa actgtctgca aagtttacaa tgaaagactt gggcgagttg 3540 catcacctgc taaaaatgga gatcaaaaga gattcacaaa agaaaacact cagaatctca 3600 cagcagaagt acatcaacga tcttctggta aagtatcaaa tgcgagactg tagtacagaa 3660 cccacaccat aagcgaaaag tgttatatta gaaaaggaaa aggatatgaa cccagaacag 3720 atagcggccc aaccattcga ttacagaggt ttagtgggtt cactgatgta tcttgtccga 3780 ggtactagac ctgatattgc taatgctgta agagagctta gtaaatatct atctagctat 3840 aaaaggacca attggaggtc ggctcagcga gtactaaagt acttgaaagg aacgtcgaag 3900 tatggcattg agtacaatgg aaatagtacc actaagttag agctatacac agacgcgagc 3960 ttcgcgaatg catctgaagg aaggaagtca atcacaggat atgtatcaat acttgctggt 4020 gcatgcatct cttggaaaag tattaagcaa gattgcatta gtattcatac agcagaatct 4080 gaaatagaag ccgccagtga aggtgttcga gaggcgatgt ggttgaggct actattgaaa 4140 gaattaggct acggccaagt actacccacc caatgctggt gtgataatac tgccgcaata 4200 agtatcatta aggatccttg cagtcactca tctaccaagc acattgatat cagtcatctg 4260 tatgcccgtg acaaacatga ggacaaaagt atcattgtga attactgtag caccaacgac 4320 atggtggctg atgcccttac gaagccatta agccaaacac agtttgaaaa actcagatct 4380 atgatgggga taaaagagtt gggttaatca tcagcctcaa atttagtttc acgcctcaaa 4440 taaggttagg tccctcaaat aaaagattga cggtcatttg gtgtaaacac aagttcttgt 4500 caatttaagg gaattattaa gaagtttagg aaaatgatta cagtaaagga aggccttaag 4560 gaaagggttc tggttacaga ctagtttaaa gttaaaacct taagtttaat ggccacctag 4620 ccctaagttt ggaaattgaa caggtccagg ctattagcca cttgctcttg agtacatttt 4680 actcaaactt tcggttaatt tcactcctga ctctctcaat tcccgccgct gaaaggcaca 4740 actggtctaa gactagacac ccacgagtgg ccgaatgatc ggactttcta cttgcagagc 4800 tcacatcatg ggcgcttggc tgaccgtttg aggtgccaaa aggccgggac ctgaatggcc 4860 gctgtggctt aggccggtct gctgtcgccg aagaaggata caagcagctt gtggatgccc 4920 ccccccgaag ggctttcgtc gggacccgca cctgtgcagt tcggaagaaa aagagagagt 4980 gaagagctca gtccaatatc ggcaacaaac aatacaaaga gtaagtctct ttagaatata 5040 agataaagta ttggatcaga ttttgggttc tgcgacaagg caaatctggg accaaggtgg 5100 taacaaacca tccctcgaga aggatcttga gtgacaatga gaagacgttt agtgacgaag 5160 aaatgatgga gaacgtgagc atctttagtg ggag 5194 // ID Zepp repbase; DNA; PLN; 8943 BP. XX AC AB008896; D83919; XX DT 02-JUN-2000 (Rel. 5.05, Created) DT 03-JUN-2009 (Rel. 14.07, Last updated, Version 2) XX DE Zepp is a non-LTR retrotransposon from the L1 clade. XX KW L1; Non-LTR Retrotransposon; Transposable Element; KW reverse transcriptase; LINE; Gag-like protein; ZEPP. XX NM ZEPP. XX OS Chlorella vulgaris OC Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; OC Chlorellales; Chlorellaceae; Chlorella. XX RN [1] RP 1-8943 RA Higashiyama T., Noutoshi Y., Fujie M. and Yamada T.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (21-NOV-1997). Takashi RL Yamada, Hiroshima University, Department of Fermentation RL Technology, Faculty of Engineering; Kagamiyama 1-4-1, RL Higashi-hiroshima, Hiroshima 739, Japan RL (E-mail:tayamad@ue.ipc.hiroshima-u.ac.jp, Tel:0824-24-7752, RL Fax:0824-24-7752). XX RN [2] RA Higashiyama T., Noutoshi Y., Fujie M. and Yamada T.; RT "Zepp, a LINE-like retrotransposon accumulated in the Chlorella RT telomeric region."; RL EMBO J 16(12), 3715-3723 (1997). XX DR GenBank; AB008896; Positions 9 8951. XX SQ Sequence 8943 BP; 1621 A; 2925 C; 2749 G; 1648 T; 0 other; agattgcatc acatcgattt cacacgattt ctccaccgat acaccagcat cttcaagttt 60 ctcacttgca ttgtgtagag aatgttcaca gctttcgatc gataccccac ttgcctactt 120 ttgtgcgtat ttactcattt cgaccacgac acagttgcca tcccgcgagc tcacacgtcc 180 ggatagcctc caatgtagct tattttcagc cactatcatc atcgacaata tatatacata 240 ttttacgcga atgttacccg tctccactgg accagatgcg cacagccacc ttcctcactc 300 tacactagcg actaacactt ttccactatc cccatggtta ctcgctgcgg gacatatatt 360 atgggattcg atgttgttct cctgaattct tgaaacagtt gtgcctgtac tttatgcatt 420 tcagccacca aaccattcca catactgaca accagtggta gctaaacagg gttcaggggc 480 aggagggaag tgtcacaagg gaggaagagt gcggggagga aataggggca ggggaagagg 540 tcacacgagc ctcttttgta ggcttcccga ggggttttca aggcctttag tagggagctg 600 ccacagctct tgaacaaggc cccaagacct cctcggcgga cggtggacgc cctaaagagc 660 taatcagcag gagcaatcag cacaggggag cacaaggtag tagagaggag cacagcagca 720 gcagcagcag cagttgccca gcaacttggg tcccccacct ggccagcctg atcagcacga 780 tgcagactgt caagtcatgg cagttggagc ctcagagagc cctggatgcc catgcgttga 840 gcactccccg gccaaggctt ctccggccgc ggccagaccg gtggggggac agcgagccac 900 tcctactggc tgccttgggc cagcttgagc tgcaggagga ggttccttat ggcagcccgg 960 agcgcatgca gctggagcta aaggtcacca gaggagtaat cgctcacttc gcgccgcatg 1020 tcgggggagt caagcagcga ggatcgcccg gggcagctga cagctgcgtg gagctctggt 1080 ttgacacggt cccggcagca gctgcggcgc ggcatgcggc agcggaggac cagcttgtcc 1140 ggctgcgtgc agtgccgggc agcggagacg tagcggtgcc ggtgcaactc actgctgggc 1200 ggttccactg ccagcacacc tgcatcatca tccacgggct gccgtacgag tactgcagaa 1260 agggtctcac tcagaccctt ctggactgtg ctggctgccc cagggacaca tacgttgttc 1320 gcggcgaatt cctcggcgac ctgccaggac cgttggcagt gggcacccat ggcgtcggca 1380 acgggaatgc gtgccttgca tacatccaga cgccggatga ggaccggcac ttgggccgct 1440 taccaaagcg gttcttcatc gacggtgaca cccggatcaa tatcacgcgg ccggggcagc 1500 tgcggcagcc cagccagcca tcctccttcc agtcgcagcg cttagctccg gagccgtcgc 1560 gccgctcagg gcctcgaccg atccgtcagc ggcagcgccg ctgcgcaggc ccacacgcgc 1620 acgcagccgc ggcgcagcgg acacagccag cacccagtgc ccagttgcag cagctggagg 1680 cccgcgtaca agccagccgc gcgcccggtg gcgaccgctc tggcctgggt gcgtctggct 1740 ccatcagtgt agcgcgatta ggcccgcgtt ttcgccccgc tggagacacg cagccgctaa 1800 ctccgatgga ctgcacccct ccgcgaagtg cacaggtctt ccctgctgct agacaggcac 1860 tgacagacat ggaggaagac acgccgccgc cgccaccgcc gccggtaccg atggagtggg 1920 agacacaggc atactcggtg ccgcagcgag agttgcgacg caggatatcg cgcgtgcgca 1980 taaaaggtgc agccaccccc atggattggg atctgcctca caccgaggat ccaccccaga 2040 cggctcaccg tcgccctccg cacctggacc tcagcggcgt cccggttgag cgtattgagg 2100 agtgcctgga gtggctggca gggcatacac acttctcccc cgcagacagc gcggcagcga 2160 ttcgccggct gcacagcgat gcaccactcg cgctcgtgtc gggaggggat gcaccagcag 2220 atagggagct gcggcaccag ctcctctgcg atgctctgcg tcgcatccat ggagcagaca 2280 gcttgccgga cgactcgtac ggcttgccgg ctctgacacc ggaggaccta gcgcagccgg 2340 cagaggtccc agcagcaccc attgcacgtc agcaggggag acccaccgtc ccgccgggct 2400 ttgagtcgcg agcagccgca gcgcgcgcag cgcagcgtgc ggcgcaggtc gcactagcgg 2460 ggctgccggc tccgtggcgc tcagcgcgta cgcggcatca gcctacagag tggtggctac 2520 agcagcaggg gcaacagcag gagcggcagc gggtagagca caggatttcc aggagcattc 2580 gcagtggggg cccgccggca cggcggccct cgcagccatg actcgctccc gatcgccctc 2640 cctgcgcctt ctcagcctca acgtcaacgg cctcagggac agagacaaga ggcgctgcct 2700 cttcaacctt ctggagcgcg acaggtggga catcatcctc cttcaggaga cccaccacag 2760 ctctacagag gaggggacag catgggcgca ggaggggcct gccggcgttc gctgcaattg 2820 gagcgggccc gcattttggt gccacttcac ctcccagtca cgcggcgtag cggtcttact 2880 aagacccaca gcctccacag cagccatcac ggtgcgtcac tgcagcacca ccggacgcac 2940 cctactagtg gacttcactt attgtggcca gccctacacg gtagcttccg tgtacgcacc 3000 tgcggccgca gcggacaggc agcaatatta cacacaggag ctgctgccca gcctgccagc 3060 agcacgttgc cttctggtgg gaggggactt caactgcatt gcaggccagc aggacatggc 3120 cgccgggcag cccggtcaga ggacgcatgg atattggacc ggcctgcggc tcgtggagac 3180 tgagcatcag ctctacgatg tctggcgtga cctcaacccc agcagtcgtg ccttcaccca 3240 cgttgccacc acaggtcagt cagctgcccg gctcgaccgc tggctggtct cggagacgct 3300 gcgggcgcgg gtcagccggg agccgcgagc gatcgggcag gttcttggtt atccaggaga 3360 ccacctgggg gtcagcctga gccttacagc tccagccagc acactgtatg gctctgcagc 3420 ctggaggctg ccccttcatc ttctggacga tcagccgttc tgcgatcgcg ttacggcagc 3480 gattccggag tatcttgccg cacacccgct cggagagggc gtcacgcagg gcagcaggtg 3540 ggtggagttg aagtggcagg tcaaagatat ggccatgcag cgttcctggg ctctcgcagc 3600 ggagcgccgg gcctctcagc gggctctgga gtctgacagc cgcgcagcgc tcgcggcgtt 3660 cacccggcgg cccgcaccag acacccttct ggcatggcag aatgcccacc agcttctgca 3720 gggcctcaat gtggaggcag ctaagggggc agcactccag gctgggatcg tatggcagtt 3780 ctacggtgag cagtccacct tctggttcca ccacctggcc cggggacggc agggccgcac 3840 agagttgatg gccctcagga caggtccagc ccctgacagc ccacgggttg tcctggatca 3900 cccagccggc agagatcggg gcggcgcggt gctgcgggag tactacagtg gcgacgaagc 3960 ggcaggcctc ttcgcggcgc agccggtgtc gctggcagcc caggatgagc tgctgcaggc 4020 agtggacaag cgtttgtctc ctcaggcagc tgcagcggca gaaggagagc gcggtgatgg 4080 cagcgtgtcg gtcgcagagc tggagactgc cctccggagc ctgccgcgcg gcaaggcacc 4140 gggcttggat ggcctgccat atgagttcta cctgcgcttc tggcctgtgg tagggctgga 4200 gctggcaggg atgctgcagg aagctttcgg cggcggccgg cgctgtccac cgctgacgca 4260 ggggcgtatc actctcttgt acaaggggaa gggggcagac agggagtctc tagccagcta 4320 caggcccatc acgttgctca acaccgacta caagctcgcg gcgcgggcga tcgccagccg 4380 gatcgggccg ctgctgaatc aggtggtgga tgccacacag acaggcttcc tgcctaagcg 4440 ctgggcgggg gacaacgtgc tggcacacct ggaggagatc agctacctgg aggccacaca 4500 ccagccaggc gtgcaggtct tcctggactt cgagaaggcc ttcgatcgcc ttgacagggc 4560 ctggattgag cggtgcatgg ctgcggtggg cttcgggccc ggtgtgcagc ggtgggtgca 4620 cattctgcac tccggcacga cctcgcgagt ggccttcaac ggctggcaca ccgatgcctt 4680 cccggtggcc gccggcgtct tccagggaag ccccctctcg ccgctgctgt ttgtgcttgc 4740 tcgcgcaccg atggccgcgc atgccaggat gcttgcaggc cagctagctt tccagcccat 4800 cagactgcct tcaggggagc cagcaccagt catgcaccag catgcggacg acaccagcgt 4860 gcacgcgcgg actcccggga tgctcagatc gtgctggggg cccagcgtgg gcctccactg 4920 cgcagccaca ggagccaggc tgcagcgcag caagagccag gccctaggct tggcagcctc 4980 agccatctcg ccgggcccga tccagtcacg gggggtcacc ttcgcggctt cgagcgacgg 5040 cgtcaagcac ctgggcattc ccttgtccac ccagccagct gcagctgcca cagccctata 5100 cacagccatc attgagaagg tggaggcccg catcgcccgc tggtccggct tcagactcag 5160 cctgctgggc cgagcgtacg tcgcaaaaca ggtgctggcc tccatggtca cctaccatgc 5220 caccttcata ccggtgccac aagacttgct acagaggctc tgcagagcca tccacacttt 5280 cgttgcggcg aaccggccgg tgacccctgg cgcagcggcg gcgctgttcc caagcaagga 5340 cgtctgcttc cgcgcggccg cacacggcgg catcgcgctg gtggacatta aggcccagat 5400 cctggctctc caggccaagg tggtgggcag gctgttggag ccggaacagc tggcctggaa 5460 ggctaacttc gaccactggc tgtacaggag cacagcctgg ctggcagcgc aggaacccgg 5520 cacgtgtcag cgcggcggca gcacatctgg cagctgggaa gattcctgct cttctccacc 5580 ttcgcagcga agcatgtgga ggccccgcag cgcgtacggc agtacctgca tgcctaccag 5640 cagctgcggc cccatcacct gcggaagccg gaagcgatcg gctacgacgc agtcatgggt 5700 gagccactgt tcttcaacag gcagctcacg gatgcagtcg gcagcccttt gcctgggagg 5760 actgggccag gcttggcctg gtcaggatca gccacctgcg cgatgtcgtg cgcggcccgg 5820 agcatccggt tcggatggtg cgagagcgcg tgcccatcct tctggctgcc ttgccagcag 5880 cctggagagc gctaatccag gtgcagccac cggccgctat gtggtgcgca tctcggaccc 5940 gtcggatcgc cgcgtctgtc tcgcacagcc gaaggtagca cctacttctc agccacacag 6000 taagcagcac aggagccttc tgtgccagtg gacgaaggcg ttgcagccat gcacgcattc 6060 cttcctccgg ccgcgcagcc tgcattggtt cagcactggg acatcaccag gccctggcat 6120 ccacgcagcg gcacacgtca gcagcgccag cacgcagagc agctgcaccc agagcagcac 6180 ctgcaggtgg agcagcagac aggggagcag cagccagggg agcagttgga gtgggagcag 6240 cagctgccgg agccactgcc accaccgccg cccacactta tacttccttt gcctctgggg 6300 atcccaggta caggaccctc aggcttgggg gctcggcacg cggccggcac atgagtttgt 6360 ggtgagggag gccaccgcgc ggcgacaggt gcttcacagg atcagcaagg gggaggccag 6420 cccggcgggc ccgctgcgac cagccatctg ggctgatacc acagatgatc agcgcacgcc 6480 ttcgggcgct cgaggcgcga tgggaggcca gggctgcagc tgctggtacc tgcgtcgcag 6540 gtcttaggca agaggcctcg agggcagcct gatccctcct cctgggcgat ctggatggct 6600 gcgccgcaca ccgttccggt tccgctgcgg gaccgcggcg ggcctgcacg cgcgccagcg 6660 gccccttcac cagtgccaca gggagcagat gtcactgttg atcctgctgc tgctgtcaca 6720 gcagaaccca tcagcacctt gggctcatgt gtggcaaagt ggtgcaacgc ttcccatctg 6780 gaccggcggc agcgcgtgac agcgtggagg ctgctgcatg gccagctctt cgtcggcggc 6840 ttcgcgcgtc acgtccaccg cgccgatccc gccggtcacg tttgcccgca tccgagctgt 6900 gcaggtcagc tggccacact cacccatgtc ttcatcatct gccctctcgc cgccggggtg 6960 tgggactggt tcgcagcgac atgggccgcg gtgaccggag acgacgcgcc accgcgcagc 7020 gccgaccttc ttctcgccga tgacaccagg atctggggac cgccgcggca gctcaggcag 7080 ctctgggacc tgcggctcgc tacgatctgt cagctgtggg cagcatatca gcgcggccgc 7140 cacaggccag atgcggcggc gatcaccccc ggagcggttg cggctcgcat cctgtcttcc 7200 tgcaagaagg ccctgcttgc cgattggcgg ctcgcgaccg tcaacgtccg gcagacagca 7260 ggtgtgctca gcgactggct tcgcggacgc gacccgatga tcaccaggga gcagtttgcg 7320 gcgcgatggt gccaccgcgc ggtcctctgc gcgctggagg agctgccggg cgcgcaacca 7380 gtcatccact ggagtgccca gcatcccgtg ccgcttccag cgtgacgctt ccgatccacc 7440 attcactgta cccagccggc cacggctcta acttggctat ctgtatgacc atgctctcat 7500 ttggccttct gccatgacac ccgctcgtgt cgattcttgt gttgaactca caccctctct 7560 taggggggcc tttgcgatag gtgctctggg cacatgggcg ctaagagcct tcgtcatacc 7620 atagtcaggc acggatgact aacctttcac cagtcccgat cccaccccgg caaagcccgg 7680 cctgtcgttc cttgtctgag accccttttg ccttagagcc ctgggaccac agattgccta 7740 ccagaagctt tgcgcctctc ctacctctaa cctttgccag cgcggaatgg ggctccgagt 7800 cacgtgcttc cactggtcga gggacctgtc gagctcggcc caacacggcc ccgggggtgc 7860 ctccttcacc cctggggcac tggcctcgcc acccagtgcc ggtggcctcg cccaccaccg 7920 gacgtgtttg cgcggctcac cccttgggta tccctcggcc agacggatcc atcgtgcgcc 7980 ccgctacctg tggagtaccg tgccggagag ccagagcgtt ggcgcaagct tacagaagac 8040 caccctgccc agggctttag gctatcaata gttttccagt gatcctccga tgtttctgtc 8100 tcaccggcag ccccaacaat ccccttggcc tgtcatccgt ggccttctgc cttagtgtct 8160 gtcctcctca ccattcacag tagttcattg aaggctatct gaagggttta gggtttccaa 8220 ccccagtatc cacccttgaa cctgagcggg tgtctaggac cttggacatg atgcctcctg 8280 cctatccccg cctccaatgt ggtgggtgtg tgtatctggt cgagttctcg ccagcctacc 8340 tgtttttcgc ctcatttgcg gcttcatatc tcccatatgc caccgtttgc ttgtgcccca 8400 ccttgctggc agattgaggc atagtttagg gtcacattgc cagccccgag cggcacctag 8460 tggtaatggg tccgaacgcg atcctgttcc atccctgtcg gccaaccgta taaacgtgcc 8520 tttcatgtct gttccaccac tggttgcccg cacatccata attgcctgcc agtgattgat 8580 gattgcctgc tttgctgtga cccctgcctc cagctgcaag ccctaggctt gccccgtggg 8640 tcctccaacg tcacctcagc ggtgttgcgt tgccggcggc tggagtgcgc ctctggggat 8700 gaggtaaccc tctggtgctt gggacatgtc catcgctagg agcctttctg ttgcctttct 8760 gtggtatgcc ttcatgcttg cgcttctctt aagtatcgca ttatcctctg cgggagtgct 8820 ctgcgtgccc caactctgac aggtttcccc aaatatccta ttgcatgcgt gctgggaagc 8880 gtgcgactgg cacctgtgta atagcggggg cttccccttt aaaaaaaaaa aaaaaaaaaa 8940 aaa 8943 // ID Copia-45_PIT-I repbase; DNA; PLN; 5043 BP. XX AC AATU01003547; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-45_PIT_; KW Copia-45_PIT-LTR; Copia-45_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5043 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003547; Positions 141729 146771. XX CC Positions [1733-2101] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 47..2101 FT /product="Copia-45_PIT-I_1p" FT /translation="MSTKDKKEPREEKQLKHLPFDGNDFEVWLERITLKLE FT RKELWRYCETEVLEPDESKESEKHARWKKETRRAKEILYDGMTNQIMKTVK FT YEPTPFRVLERLKKRFVGKTYFKYAEEMTNLRRLRLDPKANMADHLGEVRR FT LMEHIAVLGKPLDDYEKPALLIGSLPSEYDNVVETFLTSHTPQDINEPPNY FT EQLEHALEVAYDRRQGRKTESGKVDDEDKAYMSSGGRGRGRGRGRGRGRSG FT PGGRGSPGRRGGFGGRGSGGRGGSAGRGRGRGGQGRGTQQQLLGSCYHCNE FT QGHQVRDCPYLGKRPPSERSGVKQPGKRSKAGGGQQAKSGNAKSSSSQGNY FT FGEESDNAYVAGDCLQRRMENIAHKRWYLDSGCTNHITNQKSDFITLIPLS FT ARVRVGGENWLNVAGIGTVQKVLRASRGLCTLLLHDTRYVPELQCSLFSVR FT RQTRKTLPPNQRVRVHFDDDDCAIVKVQSASAAARIDETNLYHLELESPPD FT VVMVVSSTSEQSASLWHVRLGHPGRNVFNALFRHVDWPLANVDLRVDETFH FT CESCVKGKLTRKSFHTVNIPDREWLVGEFVHIDVWGPYAIASYSGKRYFAL FT FVDEASRFSTLFLLENRSEVYAKFELLYEYVKTQLKVRMKKLRCDNARELT FT SLCRMCEKKQRMECSLTVKHTPEQNGIAERMIKDCN" FT CDS 2513..4006 FT /product="Copia-45_PIT-I_2p" FT /translation="MENIPSILEAAHNDRLGGAEDEEHQHLGDVEPHCRDD FT HASRTDGHNAHVSDSRAGGARADERSGGEVHDEMQRSIKRGRSCVDVPHNE FT SRRKKQRTCKQMNQSASSTTVASGARDREHLQVDHLRGMSNEHGTMPTHRS FT KKKMHSGRRKAPTVEVQHQEYVDEKSNTMLNDELPTREWAYTPTSRGMTTT FT DSEMSRSRENSSKEGVTTSKKRGLREFVALEGANTEVCPVTRSGRVSKPPS FT WISDYVYIAYSNTNPDDDAVCSGSVEWVKAREELQQAMAKEKALAWWQDYC FT CLAVRIITEPHTLDDALLSEYAVQWKDAADEEYRALMENCTWVLVPREKHM FT KVLKNRWLFRVKYTSEGDIERFKARLVVKGFMQIYGIDYLEVYSPVVRLDT FT LRALLTLAAVWDYEAHQMDVTTAFLNGAIDVEVFMEQPTGYVAEGKEDWVC FT FLKKSLYGLKQAPRVWFRLLRSYLEEQGFGLLSRALCCCESRRWMAGLHNN FT LR" XX SQ Sequence 5043 BP; 1410 A; 1039 C; 1417 G; 1177 T; 0 other; agtggttatg agcccaaata ttacaactgg gtagttcgtc aagataatga gtaccaagga 60 caagaaggag ccaagagagg agaaacagct caagcacctg ccgttcgatg ggaacgactt 120 tgaggtctgg ctggagagga tcacgttgaa gctggagagg aaggagctgt ggcgttactg 180 cgagacagag gtgctagagc ccgatgagag taaggagtct gaaaagcatg ccaggtggaa 240 gaaggagact cgccgggcca aggagatcct gtacgatggc atgacaaatc aaattatgaa 300 aacagtgaag tacgagccca ccccctttcg tgttttggag cgtttaaaga agcggtttgt 360 cggaaaaacg tacttcaagt acgcagagga aatgactaat ctacgccgcc tacgtcttga 420 tccaaaagcc aatatggctg atcacttagg ggaggtacgc cggctaatgg agcatattgc 480 cgtactcgga aaaccattgg atgactatga aaaaccggca ttacttattg gatcactacc 540 gtctgagtat gataacgtgg tagaaacgtt tctgactagc catacaccgc aagacattaa 600 tgaaccccca aattatgagc agttggagca tgctctcgag gtcgcatatg atcgccgtca 660 aggtcgtaaa acggagagtg gcaaagtaga tgacgaagat aaggcttata tgtctagtgg 720 aggtcgtggt cgggggcgag gccgcggacg tggtcgtgga cgtagtggac caggaggtcg 780 cggtagccct ggacgacgtg gtggttttgg tggacgtggc tcaggcggtc gtggtggaag 840 tgctggaaga ggacgtggac gaggaggaca aggcagaggt acccagcagc aactcctagg 900 aagctgctat cactgcaacg agcaaggcca ccaagttcga gattgtccat acttgggcaa 960 gcggccacca agcgagcgtt ctggagtgaa acagcctgga aagcgcagca aagctggtgg 1020 tggccaacaa gctaagagtg gcaatgcgaa aagcagtagc tctcagggta attattttgg 1080 tgaagaaagt gataatgctt atgttgctgg tgattgcctt caacggagaa tggaaaacat 1140 agctcataaa agatggtatt tggattctgg ctgcacaaat cacatcacga accagaagag 1200 cgacttcatt acgctcatac cgttgagtgc acgagtgaga gtcggcggtg agaattggct 1260 taatgtggct ggcattggaa ctgtccaaaa ggtgttgaga gcatcacgtg gcctatgtac 1320 ccttctgtta catgacacac gctatgtccc agagctccag tgtagcctgt tctcagtacg 1380 acgacagact cggaagacgc tacctcccaa tcaacgtgtt cgtgttcatt ttgacgacga 1440 cgactgtgct atagtaaagg tgcagagtgc gtcagctgca gcacgtattg acgaaaccaa 1500 tctctatcat cttgagctgg agagtccgcc tgacgttgta atggtggtat cgtctacatc 1560 agagcagagt gcgagcctgt ggcatgtgag acttggtcac ccaggacgaa atgtgttcaa 1620 cgcgctgttc cgacacgtag attggccttt agctaatgtg gacttgcgtg ttgatgaaac 1680 gtttcactgt gagtcatgtg tgaaaggaaa actaacgcga aaaagctttc acaccgttaa 1740 cattccggat cgtgagtggt tagttggtga atttgtgcac attgacgtat ggggaccgta 1800 tgccatcgca tcctattcgg gtaagcgata tttcgccctc tttgttgacg aagcaagtcg 1860 attttcgact ctatttttgc tggaaaatcg ctctgaggtc tatgccaagt ttgagttgct 1920 ctatgagtat gtgaagactc agctcaaagt gcgtatgaag aaattacggt gtgataacgc 1980 acgcgaattg acttcacttt gcagaatgtg tgaaaagaag cagagaatgg agtgttcgct 2040 tactgtgaag catacacccg agcaaaatgg catagcggag cggatgataa aggactgtaa 2100 ctgaaccgaa tgcgatgttt gctggcacat tttcagctac ctcaggattt gtgggcagag 2160 gcagccgtga cgacggcata atacgttaat attgtaccaa atgccaccaa aggtatgcag 2220 gtgccgtttg ccgtgtggca tcgagagaca ccagcgtact cgcagctgag aacgttcggg 2280 tgtgctgttc tggcttatgt cgacaaagtt gagaggaaaa agatggaccc taaagctcgt 2340 gcatcgattt tcgttggcta cagtcgagaa cagcgtgctg gatagcaaga caaaccaagc 2400 attttacagt catacggctg tcttctatga gagcaagcct ggacgcgtgt ttacttgaca 2460 aattcatcca gaatcgtcca caacagagta cttaggtgtt gatgatggtg ttatggagaa 2520 catcccatca atattagaag cagctcataa tgacagactt ggtggggccg aagatgaaga 2580 gcatcagcac ttgggtgatg tagagccaca ctgcagggat gatcatgcaa gtaggaccga 2640 tggacataat gcacatgtca gtgactcccg agcaggtggg gcccgagctg atgaacgctc 2700 aggtggcgag gtgcatgacg agatgcaaag aagcataaag cgtggtcgat catgtgttga 2760 tgtcccgcac aatgaatctc gtcgaaagaa acagcggacc tgtaagcaaa tgaatcaaag 2820 tgcttcaagc acaacggtag cgtccggcgc tagagaccgt gaacatttgc aagttgacca 2880 cctgcgaggt atgtccaatg agcatggcac aatgccaact catcgctcaa agaagaaaat 2940 gcacagtggg cggcgcaagg caccgactgt agaggtccaa caccaggaat atgttgacga 3000 gaaaagtaac acaatgctta atgatgagtt gccaacccgt gagtgggctt atactccgac 3060 gtcacgtgga atgacgacca cagactcgga gatgtcacgt tctcgtgaga actcgtcaaa 3120 ggagggtgta acaacctcaa agaagcgagg attgcgagag tttgtggctt tggaaggtgc 3180 aaacacagag gtctgcccgg taacacggag cggacgtgtt agcaaaccac cgtcatggat 3240 tagcgactac gtctacattg cctactcgaa cacaaatcca gacgatgatg cagtgtgctc 3300 tgggtctgtt gaatgggtca aagctcgaga agagcttcaa caggcaatgg caaaggagaa 3360 ggcgttggcg tggtggcagg attactgctg tctcgctgta agaataatta ctgagccgca 3420 tacactggac gatgctctac tgagcgagta tgccgtgcaa tggaaagatg ctgcggatga 3480 agagtatcga gccttgatgg agaactgcac atgggtgtta gtacctcgag aaaagcacat 3540 gaaggtgcta aagaatcgat ggttatttcg tgtaaagtat acttcagaag gtgatattga 3600 gcgtttcaag gctaggctcg ttgtcaaggg atttatgcag atatacggca ttgactactt 3660 agaagtatac tcaccggtgg ttcggctaga tactttgcgt gcgctgttga ctcttgccgc 3720 agtatgggat tacgaggcac atcagatgga tgtgacaact gcgttcctca atggagccat 3780 tgacgtggag gtttttatgg agcaacccac aggttatgtc gctgaaggga aggaagactg 3840 ggtttgcttc ctgaaaaaga gtctctatgg cttaaagcag gcaccacgag tgtggtttcg 3900 cctgttgaga tcttacttag aggaacaagg atttggcctt ttgagtagag ccttgtgttg 3960 ctgtgaaagt cgtcgatgga tggctggtct tcataacaat ttacgttgat gacctgattc 4020 ttttcgcacc aaatctggta atgattcaga tgctaaaaga tatgctcgat gcccggttca 4080 aaatgaagga tcttggagag ttgcattaca tcctgggctg ggagattatc cgtaatcgac 4140 aggatcgtac cgtgtttgtg agtcagcgta agtacatgtt gactgtgctg gagcgctttc 4200 agatgagcga gtgcaatggg tgtaaaactc ctagtactgc agatctgaag ctctctaaga 4260 caatgtgtcc caccgacact gatgaaaacg atcttatgaa gacaaaacca tatcgtgccg 4320 taattggaag cctaatgtat ctaatgctag gcacacgtcc ggatctggcg tatttggttc 4380 gtgagtgtag ccagtttctt gacaatcctg gcctgatgca ctggagagcg gcaaagagtg 4440 gactacgcta tttgaaagag acgattgact ggggcttgcg actggggtgg tattaagtgg 4500 gcaagtgaaa gacttgacaa ccatctagat gcatacgctg atgctgactt cgccaatcgt 4560 gttgacgatt gcaagtctgt agcaggctac ataacgaagt tttgcggtag tacaatatca 4620 tgggtcagcc aaactgaaaa gacagtcgca cttcatacca ctgaagcaga gtatatggca 4680 ttgagcctat tggtgcaaga agtggttcac cttcgacaaa tgctcaagga actgaaagtg 4740 cagcagcgca atccctctca aatatatgtt gacaacgaga gtgccaagaa gctggcaaag 4800 aacccccagt ttcacagcag atcgaaacat atcgacgttc gtcatcattt cgttcgtgaa 4860 cgcatcgagc tcaagcagat tgacgtagag cgtgtggcca gcaccgataa atattgcaga 4920 tgccttcaca aaaccgctta ctcgacccag cgttcgagaa gcacagagca gcgatgggat 4980 tgatgacacg caaagaattt gaagaaagag cgcctaacaa tgtcaaccag taggtggggc 5040 tgt 5043 // ID Gypsy-13_PR-LTR repbase; DNA; PLN; 216 BP. XX AC AAQX01003466; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PR_; KW Gypsy-13_PR-I; Gypsy-13_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-216 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003466; Positions 2806 3021. XX SQ Sequence 216 BP; 50 A; 65 C; 46 G; 55 T; 0 other; tgtgacagca cgccatggag tccacgactt cttcggctgc tgtctgattc atcttcgaga 60 cacacaagat gttctcatgc agctatcacc cacaatccgc cactccacag gctacgtgag 120 ctgtaggtag cttccgttaa cgtttgcacg ctcaattcat tcttaaactt gccacttgag 180 gatcacccga gctcgaactc ggcagagttc gtgaca 216 // ID Gypsy-10_PSo-I repbase; DNA; PLN; 6817 BP. XX AC . XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 04-APR-2011 (Rel. 16.02, Last updated, Version 2) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_PSo_; KW Gypsy-10_PSo-LTR; Gypsy-10_PSo-I. XX NM Gypsy-10_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6817 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR [1] (Consensus) XX CC Positions [4355-4855] - Integrase core CC 'AAATC' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(42..1058,1715..6109) FT /product="Gypsy-10_PSo-I_1p" FT /translation="MSQVLMSEGSGVTLDHTSFPHLTRVEWEALHRLAAVS FT GEFVVTSLLSSATADQQRQAAQEFMERELADAKRRVSTPSHSSRNDAVKME FT TSTYSGAGQDRLPLNRWFREIDIAIASRLIEAPTAKVNFLLSRLSGKAKEW FT ALGKLVVDQHAFPSLDSLQKDLRLAFEPPQDESRMRAEFFALKQGKLSMRD FT YVQKTRHLASCIVTSPIDMASQVHVFVFGMREGMTRYCLTRAEPKSLEEAF FT ALALREDYTVSASYSRQLPADARAAMPEPMEIDAVEAAENNRRYYSRGGRN FT SRSLTCHRCGKLGHRAAICRAPAPMHAAVARADDEILAVQPKNDRDQRTRG FT RASALPRSENESAVERGFPSRNETAVERGFPSRVEQAVEHESLPRNDVAAE FT SVVQPRTAGVIERGLSHLEEGESSSSESDASSSSTRSKRRKKSKRRRLKPR FT REPSATENPPKESVCALEYVEGAPRRSRVIEVASPPRDANAITRLPGLSWK FT NFLRDLKAGEIEQVCLITEAVPVDTLHAVKVEDAPSRPKRAEPKSAREERF FT AAQSWEALRESGNPVYETAREYADIFPDEIPAELPADRGVRHEIDLAPGTK FT YCVTRQWPLPRDQVKAIDDFFESRRRAGHVRESISPHSSPTFCVKKATGGW FT RIVHAFNKLNDATIPAQTPIPRKDMVLDSMAGSVIYSAIDLTDGFYQILMR FT ECDIPLTAVSTPSGMLWEWLVMPQGLKNAPATFNRMVSHVLRPLRDFAPSY FT FDDIFVHSRAEGDLSAVEVHLKHLRQVFQVMRENKLYANLKKCVFCAPEIP FT VLGCYVSKDGVRADPEKVESICSWPTPTSPTELRQWLGMANYLHKYTKDYA FT KLIQPLSSLLKKDTTWSWREEHQAAFDSVKRSLSSAPVLMLADDSKPFHVV FT CDASDFAIGCALMQFDDEGRERVISYQSRQLKPAERNYPVHDKELLAMRYA FT LVKFRVYLLGEQTFAVYTDHASLRTAMKSPHLSQRMARWLSFFSEYNFVVH FT YKPGKNNILADALSRRPDYDPREGLERQAADEDDEDACATCVTSGLNLTSV FT APKMPLRDEIAAAYERDAQYASILAHLRSPSEATLKALSRSTRSHVERYRL FT DGSLLTYTIDRFDAPRVVVPNDEDLRARIIHEYHDAPIGGHLGREKTFAAV FT ARDFFWPHLYKWVRKWVRTCEICQRVKPSPSSQAPLRPLPVPTEAWRSVSM FT DFVFGLPPDSNGRTGVLVFVDRFSKMVHLVPVAATVTAEESAAHFVDAVFR FT LHGLPDSIVSDRDPRFTSAFWTELFKLLGTKLAMSTAAHPETDGQTERVNR FT VVEDVLRSYATSFPSWSAFLPLTEFALNNAEHSSTGMTPFFVNSARHPRVP FT AMLAVGQPTEARASTLGGGGATAEDSPPTETPAEPSPVDSPASPRFPVTES FT SANAVTRSQVKKALAAPRRAVTPLADWTERTLIDPAGAPATMQQPATTANY FT APKSSASPTDHLAVSEFVQQRQAITRFVRDALQAAVDRQKENADKRGRKNK FT TSFRTGDRVLLSTEGIRSSAVTNLGANKLAPRFIGPFKVIKVLGDAYTLDI FT PSSLRLHPTFYVGRLKRYHPADIPTSDHQDSLAGNVPEATRDANTHHPSLY FT RRDGPPPMPRMQPSPDDGGAPPARSIRRDSSATASAAIAECERSPQVPSAS FT SARSGLLHPSLYRRDGPPPIVDSAGEARWIVDRIVHHEDPSRANGRGRNPV FT RAPRAIPAARRYRVRWLGFPPDEDTWETRAALLRDVPDVVRDYEAKVAAAE FT ETTELPAEAEALSERDDGSGPPPQARGGVHRED" XX SQ Sequence 6817 BP; 1246 A; 2236 C; 2101 G; 1234 T; 0 other; cctggtagca ctttgtagtc cttccaacgt ccaagaccaa gatgagccaa gtcctgatgt 60 ccgaagggtc cggtgtaacc cttgaccaca cgagttttcc ccacctcacc cgggttgagt 120 gggaagctct tcaccgcctc gctgccgtgt ccggcgagtt cgtcgtcacg tcgctgctga 180 gctcagcgac cgccgaccaa caacgccagg ctgcccaaga gttcatggaa cgcgagctcg 240 ccgatgccaa gcggcgagtg tcaactccct cgcattcctc ccggaacgat gcggtgaaga 300 tggagacgtc gacgtattcc ggcgccggcc aagaccgact gcccctgaac cgctggttca 360 gggagatcga catcgccatc gcctcgagac tgatcgaggc gccgacggcg aaagtgaact 420 tcctcctgtc gcgtttgtcg gggaaggcga aggagtgggc cctcggcaag cttgttgtgg 480 accaacacgc cttcccgagt ctggacagtc tccagaaaga ccttcgactt gcgttcgagc 540 ctccgcaaga cgaatcgcgg atgcgtgcgg agttcttcgc gttgaagcag ggcaagctgt 600 ccatgcgcga ctacgtacag aagactcgtc acctggcctc gtgcatcgtc acgagcccca 660 tcgacatggc ttcgcaggtc cacgtcttcg tgtttggcat gcgagaagga atgacgcgct 720 actgtctcac gcgcgccgag ccgaagtcgc tggaagaagc gttcgccctc gcattgcgcg 780 aggactacac ggtatccgct tcgtactcgc gacagttgcc ggcggacgct cgggcagcga 840 tgcccgagcc aatggaaatc gatgccgtcg aagccgcgga gaataaccgg cggtactact 900 cgcgcggcgg ccgcaattcc cgttcgctga cctgccaccg ttgtgggaag ttgggtcatc 960 gcgcggcaat ctgccgcgcg cctgcgccga tgcacgctgc agtcgctcgc gccgacgacg 1020 agatcctggc cgttcaacca aaaaacgacc gggaccagta ggtgcggggc gccctactgg 1080 ctggaacgga ggtccgggtc ccccggtggc aacccgatct cctagccccc cagtgcttca 1140 cgcacacttc aatgccacca ccaccagcgg cgaccacaga ctgatcatcg tcagcctgca 1200 cgtcgccggc gcgcggcgtc ctctccgcgc gctcctggat tcgggcgcga cgaacaactt 1260 cttccgcgcc tcgtgtctgt cggtgcttcc cgcgggcgtc gcgtccggga gggtccgggc 1320 gggtggagtc aagctcgcgg acggcaaggc ccaccgcgtc gcgcggcgcg aggtgcgctg 1380 ccgtacacgt tcgacggctt ccgcagcaac gacgacttcc tggtgatcga gatgaactac 1440 gcgttcgact gcatcctggg catcccgtgg cttgcacggt atcagccgga gatcgactgg 1500 ctggctcggt cggtcaagcg tcgacgcggc ttcgacgtac gtgaagtgtt cacgcatctc 1560 ttggtggctc cgagggactg gccccacgtt accgtcgtgg acgagacagc cacgacgcaa 1620 gccgtgcaca gagcgagcga tggccctctc tgcatggcat gtgccgtgct gttggatgac 1680 gacgatgtcc ggatgacatc gcgcggcgcg atgacggacg cgcggtcgag cgagtgcgct 1740 cccgcgcagc gagaacgagt cggcggtcga gcgtgggttc ccgtcgcgca acgagacggc 1800 ggtcgagcgt gggttcccgt cgcgagtcga gcaggcggtc gagcatgagt cgctcccgcg 1860 caacgacgtt gcggccgaga gcgtggtgca gccgcgcacc gccggcgtga tcgagcgtgg 1920 cctctcacac ctagaggagg gtgaatcgtc gtcgagcgag agcgatgcgt cttcttcgag 1980 cacccgctcg aagcgaagga agaagtccaa gcgacgccgc ctgaagcccc gtcgagaacc 2040 gtcagcgacc gagaacccac cgaaggagtc ggtgtgcgct ctcgagtacg tggagggcgc 2100 tccacgacga tcgcgcgtca tcgaagtcgc gagtccgcct cgcgacgcca acgcaatcac 2160 gcgtctccca ggactctcct ggaagaactt cctgcgagac ctgaaggcag gcgagatcga 2220 gcaagtgtgt ctgatcaccg aggcggtccc ggtggatacg ctgcacgcgg tcaaggtcga 2280 ggatgcgccg tcgaggccca agcgcgccga gcccaagtca gcgcgcgagg agcgcttcgc 2340 ggcgcagtcc tgggaagctc tgcgtgagtc cggtaacccc gtgtacgaaa ccgcccgcga 2400 gtacgcggac atcttccccg acgagatccc cgccgagctc ccggcggacc gaggcgtgcg 2460 ccacgagatc gacctcgcgc ccgggacgaa gtactgcgtg acgcggcagt ggccacttcc 2520 gcgtgaccag gtgaaggcca tcgacgactt cttcgagagc cgccgccggg caggccacgt 2580 gcgcgaaagc atctcgccac actccagccc gaccttttgc gtcaagaagg caacgggcgg 2640 gtggcgcatc gttcacgcgt tcaacaagtt gaacgatgcc accatacccg cgcagacgcc 2700 gatcccgcgc aaggacatgg tgctggactc tatggcggga agcgtgatct acagcgccat 2760 cgatctgacc gatgggttct accagatact catgcgagag tgcgacatac ctctcacagc 2820 ggtaagcact ccgagcggca tgctctggga gtggctggtg atgccccaag gtctgaagaa 2880 cgcgccggcc acgtttaacc gcatggtctc ccacgtgctg cgcccgctcc gtgacttcgc 2940 gccgagctac ttcgacgata tcttcgtgca cagtcgcgcc gaaggcgacc tcagcgctgt 3000 cgaagtccac ctgaagcacc tgcggcaagt cttccaggtg atgagggaga acaagctcta 3060 cgccaacttg aagaagtgcg tgttctgcgc accggagatc ccggtgttgg gctgctacgt 3120 gagcaaggac ggagtccgcg ccgaccctga gaaggttgag tcaatctgct cttggccgac 3180 ccccacgagt cccactgagc ttcgtcagtg gctgggcatg gcgaactact tgcacaagta 3240 caccaaggac tacgcgaagt taatccagcc actgtcgtcg ctgctgaaga aggacaccac 3300 gtggtcgtgg cgagaagagc accaagccgc atttgactcg gtgaagagga gtctgtcatc 3360 cgcccctgtt ttgatgctcg cggacgattc gaagccattc cacgtcgtct gcgacgcgag 3420 cgactttgcc atcgggtgcg ccctgatgca gttcgacgac gagggtcgtg agcgggtgat 3480 cagctaccag tcccgccagc tcaagccggc ggagaggaac tacccagtgc acgacaagga 3540 gctcctcgcc atgcgctacg cattggtcaa gttcagggtc tacctgctcg gagagcagac 3600 gtttgcggtc tacaccgacc acgcatcgct gcggactgcg atgaaatccc cgcatctgtc 3660 ccagcgcatg gcccgctggc tgtctttctt ctccgagtac aacttcgtgg tgcactacaa 3720 gcctggcaag aacaatatcc tcgccgacgc gctgtctcgg cgtccagact acgacccacg 3780 tgaaggcctc gagcgccagg cagctgacga agatgatgaa gacgcgtgtg cgacgtgtgt 3840 gacgtcgggg ttgaacctga cgagcgtcgc ccccaagatg ccgcttcggg acgagatcgc 3900 cgcagcgtac gagcgtgacg cgcagtacgc cagcatcctg gcccacctcc gctctccaag 3960 cgaggcgaca ttgaaggctc tgtcgcgctc gacccgcagc cacgtcgagc gatatcggct 4020 tgatggctcc ctgctgacgt acaccatcga ccggttcgat gccccgagag tggtggtgcc 4080 gaatgacgaa gaccttcgcg cccggatcat ccatgagtac cacgacgctc cgatcggggg 4140 tcacttggga cgcgaaaaga ccttcgcggc ggtggcgcga gacttcttct ggccccactt 4200 gtacaagtgg gtgcgcaagt gggtgcgcac ttgcgagatc tgccagcgag taaagccctc 4260 gccgtcgtcg caggctccgc tgcgtcccct tccggtcccc acggaagcct ggcgctccgt 4320 ctcgatggac ttcgtcttcg gtcttccacc cgactcgaac gggcgcacgg gagtcctcgt 4380 tttcgtcgac aggttcagca agatggtgca tctcgttccc gtggctgcca cggttactgc 4440 ggaagagtcc gcagcccact tcgtcgacgc cgtcttccgc cttcatggtc tgcccgactc 4500 catcgtctcg gatcgggatc cgaggttcac gtccgcgttt tggacggagc tgttcaagtt 4560 gcttggaacg aagctggcga tgtccaccgc ggctcacccg gagacggatg gacaaaccga 4620 acgcgtcaac cgcgtcgtcg aagacgtgct ccgcagctac gctacgtcgt tcccgagctg 4680 gagcgctttc ctgcccctga ccgagttcgc tctgaacaac gccgagcact cgtcgacggg 4740 catgactccg ttcttcgtga actccgcgcg ccacccgcgc gtacccgcca tgcttgccgt 4800 aggccaaccc acggaggctc gtgcctctac gcttggtggg ggaggagcta ccgctgaaga 4860 ctcaccgccg accgagacgc cggcggagcc gtcgccggtc gattcaccgg cgtcgccacg 4920 cttcccagtg accgaatcaa gcgcaaatgc ggtgacacga tcccaagtga agaaggccct 4980 tgccgcaccg cgtcgtgcgg tgacgccgct cgcagactgg acagagcgaa ctctgatcga 5040 ccccgctggc gctccagcga cgatgcagca accagctact accgccaact atgcaccgaa 5100 gtcctcggcg agtcccacgg atcacttggc ggtttccgag tttgtgcagc agcgtcaagc 5160 aatcacacgt ttcgtgcgag acgcactgca agccgcagtg gaccggcaga aggagaatgc 5220 agacaagcgt ggacgcaaga acaagacttc atttcgcacg ggtgaccgtg tgctactgtc 5280 taccgaaggc atccgctcct ccgccgtgac caacctcggt gccaacaagc tcgcgccgcg 5340 cttcatcggc ccgttcaagg tgatcaaggt cctcggcgac gcgtacacac tggacatccc 5400 gtcgtcgctg cgtcttcacc cgactttcta cgtcgggcgc ctcaagcgat atcatcctgc 5460 cgatattccg acctctgatc accaggattc actggcgggt aatgtacccg aggctactcg 5520 cgacgccaac acccatcacc caagcctgta ccgtcgcgac ggtcctcctc cgatgccccg 5580 aatgcagccc tctccagacg acggaggcgc tccaccagcg cggtcgatcc gccgagactc 5640 ttccgccact gcctcggccg ccatcgccga gtgcgagcgc tctccgcagg tcccaagcgc 5700 gtccagcgcg cgttccggcc tgctccaccc aagcctgtac cgtcgcgatg gtcctcctcc 5760 gattgtcgac tcggcgggtg aagcgcgctg gattgtggac cgcatcgttc accacgagga 5820 cccatctcgt gcaaacgggc gtgggcgtaa tccagtccga gctcctcgtg cgatcccagc 5880 cgcgcgacgt taccgagtac gctggcttgg gtttccacct gacgaggaca cgtgggagac 5940 gcgtgcagct cttcttcggg atgtccccga tgttgttcgt gactatgagg cgaaggtcgc 6000 tgctgctgaa gagaccacgg agctccccgc ggaagctgaa gccttaagtg agcgtgatga 6060 tggaagtgga cccccaccgc aagctcgcgg tggcgttcac cgcgaagact aagaagaaaa 6120 cccgacgacg accgccggac tcgaaccggt gacctccgcc ttggtggcgc agcgttcgac 6180 cactgcgcta gctggacttc gagtccccac gacgacgcgc gcgacctgat caagcttgga 6240 gcgactgcgc gtggcaagtg gcaagaagga ttcgcgtggg gatcgaaccc acgcgtcaca 6300 gctcagcacg gtgagcgctt gcccactacg ccgctccacc gatgatcgcc ggtgtcgaag 6360 atgtccaagc tggtctcgct gccacgtcgg ttcgagtcga cggttacgcg actcttcgtc 6420 gggagttact tcgaagggtc gtcgcgaaga gccacgccac gctgatcgcc atcctgtgtc 6480 tcgacactcg ccgggtctcc gctccgtgcg catcacagtt gcgcttgtcg tcaagcgttg 6540 gtgtcgcttc ccatgctgcg tcgttgccgc gccgccgtcc cttcgggtgt ccgtggatgt 6600 ccgcagccac ttggggcgct gcgcgttgct cggcgtgtgc gccgacgaga tgtcttggtg 6660 tgtgcaagct tgctgcgcct gcgtcgtcct gtgtcgctcg gtagcgcgag cgccgtccct 6720 ccgccgcctc ggtcgtccat ggtgttcttc gggtgttctt tcggaaatgt gtcttttgcg 6780 cttacgttgc gtaagcgcaa ctttgagagg ggggtga 6817 // ID Pt1 repbase; DNA; PLN; 3297 BP. XX AC . XX DT 29-APR-2007 (Rel. 12.04, Created) DT 17-MAY-2007 (Rel. 12.04, Last updated, Version 1) XX DE Pt1 is a Penelope-like retroelement. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-like elements; reverse transcriptase; Pt1. XX OS Phaeodactylum tricornutum OC Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; OC Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum. XX RN [1] RP 1-3297 RA Arkhipova I.R.; RT "Distribution and phylogeny of Penelope-like elements in RT eukaryotes."; RL Syst. Biol 55(6), 875-885 (2006). XX RN [2] RP 1-3297 RA Gladyshev E.A. and Arkhipova I.R.; RT "Telomere-associated endonuclease-deficient Penelope-like RT retroelements in diverse eukaryotes."; RL Proc Natl Acad Sci U S A 104(22), 9352-9357 (2007)in press. XX DR [2] (Consensus) XX CC Pt1 is a Penelope-like retroelement from the pennate diatom, CC Phaeodactylum tricornutum. Its ORF2 contains homology to reverse CC transcriptases. No associated endonuclease has been found. ORF1 CC contains a leucine zipper motif. Most copies are associated with CC telomeres and are 5' truncated by addition of reverse-complement CC P. tricornutum telomeric repeats, (TAACCC)n. XX FH Key Location/Qualifiers FT CDS 82..723 FT /product="Pt1_1p" FT /note="ORF1." FT /translation="MKSSILLFAIALCALLSACSALRTKPLSAVRMKIVTW FT SNLIYCSKKCPLIRLLPLPRWTSRPNLRSLLLLLRRSSPPLSTNASKLDLN FT SSLSKKKHLGAQAFLRHRRIVRRRRAPRQQRNPRPLRSSLPKNQPHKNRPV FT EKSCNSPTSLPTLLPPPPSPLRKRNRIFGIQNDSAVRDRRNENKASVRLCC FT QPCSHSLPQPKYPSARHACVALF*" FT CDS 344..2671 FT /product="Pt1_2p" FT /note="ORF2; reverse transcriptase." FT /translation="TALSAKKSTSGRRPSFDTDESSVAEERPVNKEIPGHF FT EAVYQKTSRTKTGRSKSRAIRRRVFQRFFRRRQALYEKEIESSESKTIRRF FT ATVATKIKQVYGFVANPALTRCHNLSILLRDMPAWLYFSRPLNAAFHNLCS FT SATTVPSNTRSLLGLGLSFCVRRSRTGGPRTVDFRRFRRDCFTKMLFAGSD FT PLPPTKLFIRSTWEPPPDEIPPEFRVRVATFSRDVRRLFRRQSCSSNLLPS FT QSAALRTLRTNYSLIVCKTDKNLGPAIMDRSTYICRAFQDHLADASTYRRL FT SEITATNRISAVRRIILGFISTTFPTRNDPTRKFLLRSLEQVSDPFGYFYI FT LAKIHKTPWKTRPIVSVSGSLCHGLGRWVDSQLQKLLPSLPYVYNSSTHVC FT QRLRVHSDLPLSARCFSLDAVSMYTNIDTRHALSEIRAYFDSSGICERHGV FT QSMALLKGLEIIMLHNVFRFGDTFWVQKTGTAMGTPPAPMYATLYFAIHEH FT RILPSFSRELVEYGRYIDDGFGIWIPDPTLSDVDNDARWLSFQQAVNDYGR FT LTWEFTPRCSSLTFLDLFIELVPHEPIRTSLYEKALNLYLYLPPHSAHSPG FT MIRGLIIGQVRQIFLLTSTHGKRTELVRKLFLRLRARGYSRTMLLPLFNSA FT LVLAESLLRPAPSASLSDSPPVADPVLFLHVQYHPLDVPTATLQQTFASTM FT LHPPGEPPLPDLRNRSFSRFGCNRLIVAYHRPRNLGNLLAPRRIRTTNDAP FT VSVILRDFDDPVGVINPDPLSLEP*" XX SQ Sequence 3297 BP; 637 A; 1003 C; 682 G; 975 T; 0 other; ttagggttag gggtagggtt cctacaattc tcgaacacct tggctgcaat atccctgcac 60 ctactgatct cgagaaggct aatgaaaagc tcgatcctgc tatttgcgat cgcgctttgc 120 gcactgctat cagcctgttc tgcgctccgt acgaagcctt tgtccgctgt caggatgaaa 180 atcgtgacgt ggtcgaattt aatttactgt tcgaaaaaat gtccgctgat aaggctactg 240 ccgttaccca gatggacctc gaggccgaac ctccggtctc tgctcctgct cttgaggcgc 300 tcatcgccgc cgctgtcaac aaacgcgtcg aagctcgatt taaacagctc tctcagcaaa 360 aaaaagcacc tcggggcgca ggccttcctt cgacacagac gaatcgtccg tcgccgaaga 420 gcgccccgtc aacaaagaaa tccccggcca cttcgaagca gtctaccaaa aaaccagccg 480 cacaaaaacc ggccggtcga aaagtcgtgc aattcgccga cgagtcttcc aacgcttctt 540 ccgccgccgc caagccctct acgaaaaaga aatcgaatct tcggaatcca aaacgattcg 600 gcggttcgcg accgtcgcaa cgaaaataaa gcaagtgtac ggctttgttg ccaaccctgc 660 tctcactcgc tgccacaacc taagtatcct tctgcgcgac atgcctgcgt ggctttattt 720 tagtcgccca ctcaatgctg cgttccataa cctttgctcc tcggctacta ccgttccgtc 780 gaacactcgg tctctacttg gcctcggtct ctccttctgc gtgcgtcgat cccgtaccgg 840 tggtccacgc acagttgatt tccgtcgttt ccgtcgcgat tgctttacaa aaatgctctt 900 tgcgggaagc gaccctctcc caccgacgaa actctttatt cgctcgactt gggaaccacc 960 cccggatgaa attcctcctg aatttcgtgt ccgcgtcgca actttttctc gcgacgtccg 1020 tcgccttttc cggcgacaat cttgttcttc gaacttactt ccgtctcagt ctgccgcgct 1080 tcgtaccctt cgtacaaatt attcgctgat tgtgtgcaaa acggataaaa atttgggccc 1140 cgccatcatg gatcgttcga catacatttg tcgagccttc caggatcatc ttgcggatgc 1200 ctctacctac cgtcgcctct ctgaaattac ggctaccaat cggatttccg ctgtgcgccg 1260 tattattttg ggtttcattt cgacaacgtt tcctacacga aacgacccta cacgtaagtt 1320 cttacttcgc tcactcgagc aagtatcgga tccgtttgga tatttctata ttctcgcgaa 1380 gatccataag acgccttgga aaacccgccc cattgtctct gtcagtggca gcctgtgcca 1440 tggccttggt cgttgggtcg actcgcaact gcagaagttg cttccatcgc tcccgtatgt 1500 ctacaacagt tccacccacg tctgccaacg cttacgtgtg cattcggatc tcccgttgtc 1560 cgctcgctgc ttttctcttg acgccgtttc gatgtatacc aacattgaca cacgtcatgc 1620 tctttctgag atccgtgctt acttcgactc ttctggtatt tgtgaacgtc atggtgttca 1680 gtcgatggcc cttctcaagg gcctcgaaat tattatgctt cacaacgttt ttcgatttgg 1740 cgatacattc tgggttcaga aaaccggaac cgccatgggt acaccgccgg cacccatgta 1800 cgcgactctg tattttgcca ttcacgaaca ccgtattctc ccttctttct cgagagagtt 1860 ggtggagtac ggtcgctaca ttgacgatgg attcggaatc tggattccgg atccaactct 1920 ttccgatgtg gacaatgacg ctcgttggct gtcgttccaa caggccgtca acgattacgg 1980 acgtcttact tgggaattca cccctcggtg ttcttccctg acttttctgg acctgtttat 2040 tgaacttgtc ccccacgagc ctatccgtac atctctgtac gagaaagctc tcaacttgta 2100 cctttatttg ccccctcact ccgcccattc tcccggaatg attcgagggc ttattattgg 2160 tcaagttcga caaattttct tgctcacttc aacgcatggc aaacgcactg agttagtgag 2220 aaagttgttc cttcgtcttc gggctcgagg gtattcgcga acaatgttat tacctttgtt 2280 caattctgct cttgttcttg ctgagtcgtt gcttcgcccg gcaccctctg cgtcgctttc 2340 cgactcgcca cccgttgccg atcccgtttt atttcttcat gtccaatatc atccattgga 2400 tgtgccgacg gccactttgc agcagacgtt cgcgtctact atgttgcatc ctcctggcga 2460 acctcctctg ccggacctcc ggaatcgctc gttttctcgc ttcggctgca atcgactgat 2520 tgttgcgtat catcggcctc gcaaccttgg aaaccttctc gccccccgcc gtatccggac 2580 caccaatgac gccccagttt cggttatcct tcgtgatttc gacgatcctg tgggcgtcat 2640 taaccctgac cctttatctc tggagcccta acccgctccc ctgttggtct caaatttcaa 2700 attcgttctc gaacttggat ctttggattt ctggtcaagt ctgcttgctt atccgtctgt 2760 ctgacttcac ctaccatctt ctgcccgatc ctgatatcag tgtgtctgat tgaacttctc 2820 ttgtctgccc gacgcaatcc tatccgtttg tctgtcactt tggacttggc tgcccctacc 2880 actcttatct gtcagtctta gtctttcggt tctgtctgcc cgacctatcc ttatccggct 2940 gtctgctgct ttctgttccg tctgcccgac ttgactcttc attacgagtt ttgatcttgt 3000 tttgtctgtg gccctaccct gcttcatcct tgcagtctcc cgggtccctt tctttcaatt 3060 tcaaaccttt gcattttaaa tgctcatttc ccactttctg ccaaccgttc atttctatcg 3120 aaacgacgat ctttgcctct ttgtgagcct cgcccgttga agggaaaccg aaacactgaa 3180 ctgctgtctt cgcagtgttg cgagtaactt accttaacac cttcgttatt ctgggaatag 3240 tgcattagct cctttttacg tcctgtacgt acctgaccct aaccctaacc ctaaccc 3297 // ID Gypsy-60_PIT-I repbase; DNA; PLN; 7045 BP. XX AC AATU01006737; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-60_PIT_; KW Gypsy-60_PIT-LTR; Gypsy-60_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7045 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01006737; Positions 31903 38947. XX CC Positions [5844-6317] - Integrase core CC 'GTCTT' target site duplication CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS 1754..2851 FT /product="Gypsy-60_PIT-I_3p" FT /translation="MQRNPNQPQRIIGWAHPELIRLLMYAGTTIFVDATFR FT CVPSQFRQCVVIMLLDQATGLYVPIFYILCTSKTQDTYWNIFNFIVECTDE FT RIRPAAIVCDFEAALINAVAVQFPEAQRIGCFFNFKQAVRRNMKKLAIPEV FT QIRIAMQPGVLDMLTVIKRKHIKTKGVRFVQQSIREKCDEAGIVYSATKWE FT RFWRYFAKVWIKKYGPEVWNVHGLDRGLVNRTNNPLERFNREMNGAFSAPH FT PTLPVFVSTIERLARGHVQRRLDTPSRACKRPRYDVQLPRAVEFELTDKSD FT PAEEGVKSGLGVGDYSDDSDSADDAAEAEDSADDAAEAADSNSDSDSSAND FT SDENAHEFPFEYEGDDASDSAVV" FT CDS join(4177..4947,4951..5913) FT /product="Gypsy-60_PIT-I_1p" FT /translation="MPDLSVDLEDVKGAQFFGLFDFIKGYWQLALAEECQE FT MLSFMTHRKVYTPRRVPQGCTDAALFFQSTIQKCLKELLHKHLPVWIDDLL FT LFAADADTYLLKLERLFELLDFFGFKSSPKKSSLLEKEVRWCGKIISGNSV FT HHDPERIRALQELPYPTAAGELQQFLCATNWMRDSLIDYARVARPLQSLLD FT NALSRASRRTKRVAAGIAVTLGGVEQEAYDEMKQLLSTSVFLAFPKNGSTM FT CLLTGASDSGWSVIVSVDQWIRHKAAHEQQHELLTCMSGTFTGSQCNWSII FT EKEAFPIVCACDKLSYLLLRPGGFILYCEHRNLVYVFAPSKEVKKHIRGKL FT LRWSTKLMDCRYEVEHIEGSANVWADMVSRWAGNHKPSVRLNMMKLRKRAR FT KEPNDTVQRPKRRRCKKNKPVALIANDEQPQRILVHQLRPLDDPEFEWPTF FT DAIRAVQQQHASERPRQATGDDDTGWFIENKLWIPRTAFLLTQRLLIISHC FT GSQAHRGREAMITSISRHFNVHHLRPRVDHFLSTCLMCKHVKGAKVVQRPW FT GPTNRTNKRNGALHFEFFHLVTHLLETVTCW" XX SQ Sequence 7045 BP; 1840 A; 1648 C; 1876 G; 1681 T; 0 other; aagaattctt tagttgcgaa ggtctcgcga ctgaactaag atgaacatga cgagtgacat 60 tagaagccaa ggcgaagatg caagggagaa tcgtagcacg gaaaaggcgc ataccgttaa 120 agctattatt tcaacggaag ccacgaccgc gtcgtgcacg accagagttc cgcagccaat 180 tttcgccacc gttgctgctc cagaggtaac gtctacgtcg agagatgccc tgatagagtg 240 gctaaagctc cgtatagagt acgaagaggc tatgcaagag cgatgcaagg atggaaagta 300 ggactttgat gcagtgctgc gaagtgttag aagttcgttc gacgacgatt tgctgactac 360 gctgtgcgag gcgacttcgg gtgtttccaa aagcagtctt acagatgaat ttctgctaga 420 gcagattcac gcaatcacgg acagctatca aaaccaagtt ttgccccctg tcaatgaact 480 tttcgccgtt gaactgaaaa tgaatatggc taactccgat atccagtctc gcgtgattga 540 ttattttctc tcgtgcaact cgttgatcaa gaagtatggt tttactagtt ttttcgatgg 600 tgacaaggga gctaagaaaa aatgcaagct tttgattaat tcgttgccga aagatctgaa 660 agtgaaagtg aagaacaaga acgattatcg ttgcccagag gcaagcacca gtgtattacg 720 actatcgaag cttatcaacc agcaggctct cgagcaagcc catcgaggac cgtgccttga 780 agaggatcca aggtgcaaag cgcaagccgg tgccgagtga gcagcaccga gactttcaga 840 gcaagaaggg gtttatttaa gggccggcaa cggttagcgt taaaatgggt cacctacggg 900 tccggtcttt ttcgggtccg cagtgcagct acgatactgt cggtctggtc tccatcgggt 960 ctcctttcag cgtcactaat acaatcacga agataaaaat tgtctgcaaa cacaaaccaa 1020 atcatcatta attgcaatct tgaaaatgag ttgacggccg acacaacctc gtgcttgtca 1080 agttgaacga gtggttgcca ggcatcgtaa cgatgaatgg tgcgccgttg ttcggcagat 1140 attcacagga ttttgcgagc agtctccatc ttcctaacag tcaatacgat ggcagagacc 1200 ccagcgatcg agtcggggcc acccgaccct ccaccagctc cgcagcatgc tccacgctcg 1260 gcccaatttg ctacggttgt tttcatcgac ggctttcagt tcacacgggc gcgcatttca 1320 cggcgaaagg ctacctaccg ctgcagcagc tatcggcgga cgggctgccg agctaaagct 1380 gaacggacgc cactacagga tgcgtacacc gtccttgtcg agcacacctg ccagcttagg 1440 gttgcattcg ctgcacaaga ggccaacgtc gtcgaggaga tgaagcgtcg aatagacgct 1500 cttgcaattt cggagctgtc gagtactgct cgtcacgtgt gggatattgt caatcaagag 1560 ttctacactg aagcagagcc tggccgtgct gtcgtcggtc tcacgcgaga gcaggtgatc 1620 actcgtgtgt ttaatacaag gcgcaatcac tacggcggag aagtgcatgg gcgtctggag 1680 ataccgccgc tgtcactggt gaagagctca actcttcgtt ttttttcagt tccatcacat 1740 ctactacgaa gacatgcagc gaaacccaaa ccagccgcag aggattatcg ggtgggctca 1800 tcccgagtta atccgtctgc taatgtacgc tggcacaacg atcttcgtgg acgcaacatt 1860 ccgttgcgtc ccatcgcagt ttcggcaatg cgtggttatc atgttactcg accaggcaac 1920 tgggctctat gtccctattt tctacatcct ctgcacgtcg aaaacacaag atacgtattg 1980 gaatatcttc aacttcatcg ttgaatgcac cgacgagagg attcgaccgg cggcgatagt 2040 atgcgacttt gaggctgctc ttatcaatgc tgttgctgtg caatttccag aagcacagcg 2100 catcggctgc ttttttaact ttaagcaggc ggtgaggcga aacatgaaga aactggcgat 2160 tcctgaggtt caaattcgaa ttgctatgca acctggtgtt cttgatatgc ttaccgttat 2220 caaacggaag catatcaaga cgaagggtgt gcgctttgtt cagcagagta ttcgggagaa 2280 gtgcgatgaa gctggcatcg tctactctgc aactaagtgg gaacgtttct ggcgttattt 2340 tgccaaggtg tggatcaaaa aatacggtcc tgaagtttgg aacgtccatg gacttgatcg 2400 tggcctggtg aaccggacta ataatccgtt agaacgtttt aatcgggaga tgaacggggc 2460 attcagcgca ccacacccca cgttacctgt tttcgtcagc acaattgagc ggctagcacg 2520 tggacatgta cagcgccgcc tggacactcc ctcacgagca tgcaagcgcc cccgctacga 2580 cgttcaattg ccacgtgcag ttgaatttga attgacggac aagtctgacc ctgctgagga 2640 aggtgtcaaa tctgggctgg gcgtcggtga ctactcggat gattcggata gcgctgatga 2700 tgcagcggag gcagaggata gcgctgatga tgcggcggag gcagcggata gcaacagcga 2760 ctcagacagc agtgccaacg acagcgacga aaatgcccac gagtttccgt tcgaatacga 2820 gggagacgac gcgagtgatt ctgcagtagt gtaggctggg gcattgcaac aggtgtttca 2880 cgaggactca cctgcagtag gaagtaggtt agatatgata cgtgtctggg ctgctaggaa 2940 ggtttcctcg ttttgtatcg agcctagcag caaataaaaa gcagcaatcc tttgaattca 3000 ctgtcggtct ggtctcgcga attggtctcg agacccgatc gagaccagaa ctgtaggtga 3060 cccattttaa attcttcccc ggcaacacca gtccgaaaag cagccgaatc aattcacctt 3120 gcggaaggtt gatgctgttg ttggaagaaa tgatcaaaca tccaagaaag gagtcccaca 3180 gaatggatgt ttccactgca gtggtgcgca ctatttgagt gcattcccca ccgctaccca 3240 acaggaccgg gatcgcattg cggctcaacg ggacaagaaa ggtggggtgt ttcctgcggg 3300 gaggcaccgc tagcctccga cgattagctg aatgcctgcc aacacagacc cgctcggtcg 3360 tgttggaaga cgcttatgcg gtgcctttct gtgcggacag tggtgcggac aggtccggaa 3420 taaacatgaa cgtgtatgaa aattttatga gagtttgtcc tgaagttaaa atggtgaaac 3480 ttgaagaacc attcacttgc agaggagctg atggaaaact tattgaagtt aaaatgactg 3540 ctaacttgca tttgagacta cggacagtgg ttggtagcgt tcgaatcacc gagccagttg 3600 agtgcctaat catttctggt gacacgaccg aggtcttgct gggtaacgac gtgctgacat 3660 gcttggcatt gacgtgaacg agcagctcga tttgttagtg gccaatgctg tctaaggtag 3720 caaagacgat gaatttgatg atatgaatga acccgagatc ggtacgaatg tggagctgag 3780 tgatgaaatt cgtgccgcct tggaggaatt aatggaaaag gcagaaaatc agggttttcc 3840 aaaggaactg ttgcctcagt tacggcgtat ttctacccgt ttcgatatct ggagactgaa 3900 acttggtgat gatccaccag cacgagtgcc gccgatgaaa attcgtctca aacctggtgc 3960 caagccgtac cgctgcaagg caaggcgata cccacccgaa attcgtatat ttctcgacga 4020 tttcaacgaa gagttagtac gactcggctg ggtatacgaa attctgaaag ccgatgggct 4080 tgtccggtac ttcctgttag gaaaagtgga gggacataca gacagactgc cgactacaaa 4140 cctttgaacg cctttgtgga agcgattgct ggggtaatgc ccgatttgag cgtggactta 4200 gaagacgtca aaggcgcgca gtttttcggt ttgtttgatt ttatcaaagg atattggcaa 4260 cttgcgctcg ccgaggagtg ccaagagatg ctatcgttta tgacacatcg gaaagtgtat 4320 acgcctcgac gagtgcccca aggatgtacg gatgctgctt tattctttca atctactatc 4380 cagaagtgct taaaagagct cttacataag catttgcctg tctggattga cgatttattg 4440 ctttttgcag ccgatgccga tacttatctc ctaaaactcg aacggttgtt tgaactgctg 4500 gatttctttg ggtttaagtc gagcccgaag aaatcgagtt tgcttgaaaa ggaagtgcgt 4560 tggtgtggca agataattag cgggaatagc gttcatcacg accctgagag gatccgagcg 4620 ctgcaagaat tgccgtatcc gacagctgct ggtgagcttc agcaattttt gtgtgctaca 4680 aactggatgc gtgattcatt gattgactat gctcgggtgg caagaccgct tcaaagcctg 4740 cttgacaatg cactgtcgcg agcctctcgg cggactaagc gtgtagccgc ggggattgca 4800 gtaactttgg gtggagtgga acaggaagca tatgatgaaa tgaagcaact cctatcgacc 4860 agtgtgtttc tggcttttcc aaagaacggg tcgacgatgt gtttgttgac gggtgctagt 4920 gattctggct ggagtgtcat tgtttcttag gtagatcagt ggatacgtca taaagcagca 4980 catgaacagc aacacgagct cctgacctgc atgagcggca catttacggg atcgcagtgc 5040 aattggagca tcatcgagaa agaagcattt cctattgtgt gcgcctgtga taaattaagc 5100 tatttacttc tgcggccggg tggctttata ctgtactgcg aacaccgcaa cctcgtatac 5160 gttttcgcgc ctagtaaaga ggtcaagaaa catattagag ggaaattgct cagatggtcg 5220 accaagttga tggattgccg atacgaagtc gagcatatag aaggaagtgc caatgtctgg 5280 gccgacatgg tgtccaggtg ggccggcaat cacaagcctt ccgtccgact taacatgatg 5340 aaactcagga aacgagcccg caaagagccc aatgacacgg tgcagcgacc caaacgccgg 5400 cgatgcaaga agaacaagcc tgtggcacta atcgcaaatg acgagcaacc tcagcgtatt 5460 ttggtgcatc aactacgacc acttgatgac ccagaatttg agtggccaac ctttgatgct 5520 atccgtgctg tacaacagca gcacgcgtcc gagcgccccc ggcaagcaac tggcgatgac 5580 gacactggat ggttcatcga gaacaaactg tggattccta gaacagcgtt tttactaact 5640 cagagactac tcataatttc tcactgtgga tctcaagccc accgaggacg cgaagcaatg 5700 attaccagta ttagtcgtca ctttaatgtg caccacctac gacctcgtgt tgatcatttc 5760 ctttcgacct gcttgatgtg caagcacgtg aaaggggcca aggttgtaca gcgcccatgg 5820 gggcctacta atcggacaaa taagcgaaat ggcgcgttgc atttcgaatt ttttcacttg 5880 gtgacacatt tgctggagac agttacttgt tggtgatgaa agatgaggcc acgcatttca 5940 cggagctgac tccatgtgca acccctacaa gcacagttgt ggtggacgcg atgctcgcgt 6000 ggcacagcag gtttgggttg ccccacctct ggagaagcga ccaaggatca catttccgaa 6060 acgaagtgat gcatgagctt tgtagacgca tgaaagcacg gcatgacttt actgttgcat 6120 actcgccgtg gataaacggt agtgttgagc gagcgaaccg tgatatcatc caagtattac 6180 gagctctctg cctcgagtat aaggtgtcca cgcacgattg ggcgttcttt gtgccaatgc 6240 tgcaggccaa attgaaccac acagcggtgc cttcgttggg aaacgagctc cggtggagct 6300 tttttgcggt ttaccagtac catcacctct caacctttgc atggatccta aacaacggaa 6360 aatcatggag attcctcagc aacccgaggt aatatcgagc tggctagagg aactgtgcag 6420 cagtattcgt gacctgcaca taccaatgat tgaagagcgg gcacgacaga ccgtgcgcaa 6480 tcaaagacag cagaaatttg cccgtcgtcc gaacttcgac atcggcgatt atgtgctacg 6540 gtcacgggta gaccaaaagc actacgacaa gctgttggtc acttgggtcg ggccgtacca 6600 agtcgtacgt gccgacccgc attcttttgc tgctctacac ttattaacgg gtgatatatc 6660 ggatgtacac ccttctcggc ttaagtatta tgccgatagc acctatgaag tcacggaaga 6720 acttcgtgat cacattgcgg cccaaggaat ggtactatct gtgcaagagc tactacaagt 6780 tcagtggaat gaacccatac acgattttga agtactcgta cgatggaaag ggttggagcc 6840 gattgaagac tcctgggagc ccgtacagca actgaagaag gacataccag tcctactagc 6900 tcactttcca gaaaatactg acgacgagag cttcaagcgg catgtatccg cacggaacaa 6960 caccaagcca aagccaacag gacggctgcc acggaaagca caacggagcg tgcattcatg 7020 aagtggtgaa ggcttggagg ggctg 7045 // ID GypsyPi-1c_I repbase; DNA; PLN; 7528 BP. XX AC AY830102; XX DT 27-AUG-2005 (Rel. 10.08, Created) DT 27-AUG-2005 (Rel. 10.08, Last updated, Version 1) XX DE Phytophthora infestans gypsy-like retrotransposon GypsyPi-1c DE (internal portion). XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Interspersed repeat; GypsyPi-1c_LTR; internal portion; KW GypsyPi-1c_I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-7528 RA Jiang R.H., Dawe A.L., Weide R., Van Staveren M., Peters S., RA Nuss D.L. and Govers F.; RT "Elicitin genes in Phytophthora infestans are clustered and RT interspersed with various transposon-like elements."; RL Mol Genet Genomics 273(1), 20-32 (2005). XX DR Genbank; AY830102; Positions 347 7874. XX FH Key Location/Qualifiers FT CDS 2950..5886 FT /product="GypsyPi-1c_I_1p" FT /translation="RPGDDQSPGDAIVRPLRTFVQTYFDDIFVHSRAEGGK FT TAMEVHLGHLRRVLDAMRANKLYANIDKCVFASREIKVLGCFVSNVGVRAD FT PNKVKAIAAWPTPRSQKDLRKWLGLANYLHKYSAGYAGFAKPLSSLLQKDV FT DWRWEQEHQDAFDSIKASLQEAPVLALPDETKPFSVVCDASDYAIGCALLQ FT DDTAGQERVISFQSRQLKAAERNYPVHDKELLAMKYALVKFRVHLLGSRPF FT VIYTDHASLRTATNSPHLSQRMARWLSFFAEYNFRVEYKPGKLNVLADALS FT RRPDYELAHITRATTDLYDRIRMAYRDDEAVAPIVKFLKAGTSAKSDWISS FT RQRSRLHRYELKEGLLYYRVEPTDPLRVVVPNDEDLKFDTLAEAHDAPSSG FT HLGREKTFLSVSQSFWWTHMYKWVARYVKTCETCQRVKPAGHSSAPLQSLP FT VPADCWKSMSLDLIFGLPADEHGNTGILVFVCRLSKMIHLASAPVTVTGEQ FT TARLFVDGVFRYHGLPETIVSDRDPRFTAAFWKTLFPLLGTRLQMSTADHP FT QTDGQTERVNRVLEDTLRSVCAAAPRTWSTQLPVVEFALNNAVHASTGFTP FT FFLNGFRHPRVPLTLRGDTDSSILSGGEARKDLTSQVSDVRPVSLRKQVKS FT FMDTKLNIVSRVRDAMAAAQDKQKDYSDKQGRGNLSIFEVGDLVLLDTRNL FT PLDTVSSVGSNKLKHRFIGPFAVLARHGASYTIDLPKSMTTHPTFYVGRLK FT RYFDPQGVADSQTPLDPAPRSEDRSQSLTRSSEQAPKPRSGRQGCGQDRTP FT EGLHTNGPRRHTPSTLSTPGTHHTRTSGSVPQAAPDVATKPRSVGSCERPR FT SDRTKRPGDPPAGAGSRPLAPPGPGGPQDERARSDSWPGRQHYRQSQGQVQ FT SQARGHVDGGGQPQSPVSDPQSEHSDESGSREAPSTRTRTRAPPPLLDRNG FT EVHFHVERILQEQRCRGKRQLLVK" FT CDS 3067..5886 FT /product="GypsyPi-1c_I_2p" FT /translation="MEVHLGHLRRVLDAMRANKLYANIDKCVFASREIKVL FT GCFVSNVGVRADPNKVKAIAAWPTPRSQKDLRKWLGLANYLHKYSAGYAGF FT AKPLSSLLQKDVDWRWEQEHQDAFDSIKASLQEAPVLALPDETKPFSVVCD FT ASDYAIGCALLQDDTAGQERVISFQSRQLKAAERNYPVHDKELLAMKYALV FT KFRVHLLGSRPFVIYTDHASLRTATNSPHLSQRMARWLSFFAEYNFRVEYK FT PGKLNVLADALSRRPDYELAHITRATTDLYDRIRMAYRDDEAVAPIVKFLK FT AGTSAKSDWISSRQRSRLHRYELKEGLLYYRVEPTDPLRVVVPNDEDLKFD FT TLAEAHDAPSSGHLGREKTFLSVSQSFWWTHMYKWVARYVKTCETCQRVKP FT AGHSSAPLQSLPVPADCWKSMSLDLIFGLPADEHGNTGILVFVCRLSKMIH FT LASAPVTVTGEQTARLFVDGVFRYHGLPETIVSDRDPRFTAAFWKTLFPLL FT GTRLQMSTADHPQTDGQTERVNRVLEDTLRSVCAAAPRTWSTQLPVVEFAL FT NNAVHASTGFTPFFLNGFRHPRVPLTLRGDTDSSILSGGEARKDLTSQVSD FT VRPVSLRKQVKSFMDTKLNIVSRVRDAMAAAQDKQKDYSDKQGRGNLSIFE FT VGDLVLLDTRNLPLDTVSSVGSNKLKHRFIGPFAVLARHGASYTIDLPKSM FT TTHPTFYVGRLKRYFDPQGVADSQTPLDPAPRSEDRSQSLTRSSEQAPKPR FT SGRQGCGQDRTPEGLHTNGPRRHTPSTLSTPGTHHTRTSGSVPQAAPDVAT FT KPRSVGSCERPRSDRTKRPGDPPAGAGSRPLAPPGPGGPQDERARSDSWPG FT RQHYRQSQGQVQSQARGHVDGGGQPQSPVSDPQSEHSDESGSREAPSTRTR FT TRAPPPLLDRNGEVHFHVERILQEQRCRGKRQLLVK" FT CDS 7342..5201 FT /product="GypsyPi-1c_I_3p" FT /translation="MPRGTAKSGAKTRSKAAAGKAQAKSTKPHGKGSALKE FT AAQVASEAIGSSGDAAVDKRASKRRSPSPSSSDNRPNPRFVEREFNSDSED FT DAESGSTHDAPAGSVGGHNPVPSEHKDDSVQSPASDQGDHSPRTSVRSESP FT AAKAKDAPKAGGDEEGNPRKRLSLAEGLARAKAFKAEGAKPSKKRTASKSP FT LREEKEARRFYRSIFDSSDEEEEKEEEEEEEGAIVEPQEVSNDLDQQQEDC FT QAAQRVRGGSVAAPVSQGAAINSRGYWPPEESSGADLFLELLVAPRGLGGG FT HTSRGIYERALVQKEQLFVDNLEAARCVLLAQHRIPLKDFTTCRKKPETRG FT GLYPVWGYPWVMPENCLTWSSCEDMFWAWVETLKYSPTELRELHEDQQLSH FT ILDQRDLRVRFAHLISKRMLPRDILKRAASSAHDERGYGMYSSTVPRSGKK FT PRTTYEAAAASVPRLRQPSGSKSGAVQSAPTSSRSGHNLSTSRGAVACRDT FT VAPGGSAPRGSGLLHSGQAGAEVPSYEYEYSAPPESHSRPSAPTAGPTRDS FT EVDRLRQRVLVLAIALGLGTGGNAAAQARSQSELARLAGRLDLVEREVASL FT HLRVDRRASSSDLNEAFRMIRRIEALLPRPEPPAAHSQTYAYGAYPAYSAY FT SAYGAGVRSYGAPPAYGLDRSLAVPTEAWVPAPTTSSTTVTGPRFEELGQG FT GSVSQQPPAGQSTA" XX SQ Sequence 7528 BP; 1628 A; 2188 C; 2210 G; 1502 T; 0 other; cacttggtag cactagtagt caattcacgc caccgcgggt agactacctg aacctctccg 60 aagctcgttg ccatggatag gaacgacttc tcccatatga acgactctca gttcgagtcg 120 gttcggaaga tggcaggcat cttcgggatg gaggccatgc agagcctggt ggtgtcaaca 180 ccggctgagc agctcgagcg cgtcaatgca ttcgacgcgt acgagcaggg cctcatcgcg 240 catgtgcggg agaacctgca ggctccggcg gcgggagcaa atccgcccca cccgaagcca 300 atacggctga aggttaagcc gtatgaaggg aaggaaggcg agagccttca cttctgggtc 360 cgagaagtag agctcgcgat ggacgcggct ctgatctcga ccgagcaact gcgtgttgct 420 tttgcactct ccaaccttag cggtcgtgct aagcgttggg tgtacactcg ggaagcaaca 480 tcccctggat gttttacatc ctgggctcag ctttgcgaac agctccgagc cgcatttctc 540 ccggcgaact acgagtaccg ccagcgttcg cgcttcctcg cgtgtaaaca aggaaggcgc 600 gaactgcacg agtatgtgca agagatacgg gagctcacgg cgtccctagt gggaaaccca 660 ctcaatgaac acatcaagat gactgtgttc atggacggcc ttcgagtggg ccccgcacgc 720 aatcagctgt tccgggtgca gtcaagcacc cttgaagagg cgattaaagt ggctcttcag 780 gaagagtaca gccatcgcca ggcgcgtacg ccggcctcag cgtggcctgg gagttccttg 840 tcggcccccg gtcgaacaag ccccaacgga ccagttccca tggagctcgg gtccgccgaa 900 cagcgtgaca tccgctgctt cggctgtggg aagatgggcc acttcaagcg cgactgtccc 960 gcggaaagac tccgcagacg gtccttcccc aagcccgtcc tcaagggtcg ctggcagaag 1020 ccaggatccc ggggacaagg gaacgcagag aaccagtagg ggcggggcgc cctactgggg 1080 aagaactaag tcttcgtgat gggtgcgcgg gtggcgcgta ccacggggac ttagccctga 1140 gagtcttcgc actctcgaat cggcaaagag cagcggcggg ttgctcgtag tacacggatg 1200 tgtacgggga tacgatcatc cctttagaat cttgattgac tctggggcgt cgaagagttt 1260 cgcacgccgc cagacggttg ctcgtaacag caaccagttg tctgatgctt tgagagaaag 1320 caagggcaac gggacggtgt cagtgccact ggccgacggg aagatcgtta ctgtccccaa 1380 cgtccaagtg gatctggccg tcaagtttaa ggactttgac agcctcgaac agttcactgt 1440 tctcgatatg gatccatatg atatgatcct gggcatgccc tggcttgaga agcacgagcc 1500 ctggatcgac tggcgaggca aggcaatcgg tgccagccgc cctgcgcagt ccgacagagc 1560 attggtgagt catgttccca cctctgtcag gacccggggc gcccgcgagg gctgccaggg 1620 taccaaagcg tccggcagat gcttgggagt cgtcgacgta tatgacgact ccgaggatgt 1680 tttgatggtg gccgcgccca gaagaggcgc tggccaagtg ggtaacttag gtccacaggc 1740 gggtaactta gttccgcagg cagctgcagc tgtcatgaac actgagaaca gcgtgttcag 1800 agtgggtaac agagttccac tcacggtcgc ccagacgata actgaagagg aagacgtcgg 1860 atacgcttcc tgtgtgggta acacagtgcc acacgcggtc gcccagacct taactgaaga 1920 ggaaggcgtt gaacacgctt cctgtgtggg tacaacagta ccacacgagg ccacgagtgc 1980 ctcggatgtc gtagcaacga cattcctaga cgtgggcagc aaagctcccc gtcacagacg 2040 ccgtcgacaa agacgccgcc gccgcctcaa gtcggatccg aacttcgttc cgatcgacgt 2100 ctcctcaagc gactcggagt ccagggcccg ggctcctccg acgaggccgg tggaagagtg 2160 ttatcacttc ttcgatggcg agacaggttt acccgtcaag gcatctggtg tccatttgga 2220 accgttgcca gaggttgcag agatactgaa cctcgaggag atgacggctg agtctttcct 2280 ggccaacctc aaggctggag agattgctga gatggtactc atgagacctg agaccactca 2340 ggaggagctg aactcctcct ctgtcttgga cgagaacgtc ctggaaaaca tgaacaagca 2400 gcgtcaggcg cgcttgggtt ctgagattct caagagcccc aaggatccgg tgtatccttt 2460 ggtgacggag tatgcggacg tggtgaacaa acacccaccg acccaactcc catcggatcg 2520 aggcgtacgg cacgagattg atctcgtgcc cggcacaaag tattgtgtca cgaggcaatg 2580 gcctctcccg cacgaacagt gcgaggtcat tgatgccttc ttcgccgcaa aagcgaaggc 2640 aggcatggtg cgggaatcga aatccccgca ctcgacgccg actttctgcg ttcgtaagcc 2700 aaacggaaag tggcgtctgg ttcacgctta taataagctg aacaacgcaa cggtgccggc 2760 ccaaacaccg atcccacgaa aggatgtgtt gttgaataac atggccggga gcgtactgta 2820 cagtgcgctg gatttggtag acggatacta ccaaatcctg atgagagaga gcgacatccc 2880 gctcaccgcg gtaagtactt caagcggcat gctttgggag tggctcgtca tgccgcatgg 2940 cttgtctaac gccccggcga cgatcaatcg cctggtgacg caattgttcg ccctttgcgt 3000 accttcgtac agacgtactt cgacgacatt ttcgtccata gccgtgccga gggaggcaag 3060 acggccatgg aggtgcatct aggacacctc cgtcgagtgt tggacgcgat gcgagcgaac 3120 aagctctacg ccaacatcga caagtgcgtt ttcgcgtcac gagagatcaa agttctcggt 3180 tgcttcgtaa gcaacgtggg cgttcgggct gacccaaaca aggtcaaggc catagcagca 3240 tggccgacgc cccgatccca gaaggatctt cgaaagtggt tgggcttggc caactacctt 3300 cacaagtaca gcgctgggta cgcgggcttc gctaagccct tgtcgagcct ccttcagaag 3360 gacgtcgact ggcgctggga acaagagcac caggatgctt ttgacagcat caaggccagt 3420 ctccaagagg cccctgtcct ggctctgcct gacgagacga agccgtttag cgtcgtctgc 3480 gatgcctccg attacgccat cgggtgtgca ttgctgcagg acgacacggc tggacaagaa 3540 cgagtcatct cgttccagtc ccggcagctc aaagccgccg agcggaacta ccctgtccat 3600 gacaaggagc tcctggcaat gaaatatgcc cttgtgaagt tccgtgttca ccttctgggc 3660 tctaggccct ttgtgatcta cacagaccac gcgtccttga ggacggcgac taactcgcct 3720 cacctctccc aaaggatggc gaggtggctg tccttctttg cggaatacaa cttccgcgtc 3780 gaatacaagc cgggcaagct caacgtgctt gcggacgccc tctctcggcg tcccgactat 3840 gagttggccc acatcacgcg ggcgacaacg gatctatatg atcggatacg catggcgtat 3900 cgggacgatg aggctgtcgc gcctatcgtc aagttcctta aggccggaac gagcgcgaag 3960 tccgactgga tctcgtcgcg acagcgctca cggctccacc gatatgagtt gaaggagggc 4020 ctcctctatt atcgggtgga gcccactgat cctctacggg tggtcgtacc caacgacgag 4080 gatctgaagt tcgacaccct ggcggaggcg catgacgcgc cctccagcgg ccacttgggc 4140 cgcgagaaga cctttctgtc ggtctctcag tccttctggt ggacccacat gtacaagtgg 4200 gtcgcccggt acgtcaagac atgtgaaaca tgtcagcggg tcaaacccgc agggcactct 4260 tcggctccac tacagagcct gcctgtaccg gctgattgtt ggaagtcgat gagccttgac 4320 ttaatctttg ggcttcccgc cgacgaacac ggtaacaccg gaattttggt gtttgtgtgt 4380 cggctgagca agatgataca tcttgcttca gctcccgtca ctgttacggg cgaacaaacc 4440 gcaaggttgt tcgtcgatgg agtgttccgc tatcacggtc tcccagagac gattgtctcg 4500 gatcgagacc cgcggttcac tgctgcgttt tggaaaacgc tgttcccttt actgggaact 4560 cgtctgcaga tgtccactgc ggaccatccg cagaccgacg gccaaacaga gcgcgtcaat 4620 cgagtgctcg aggacactct gcgcagtgtg tgcgcggcag caccacgtac gtggtcgacg 4680 cagctcccag ttgttgagtt tgcgctcaac aacgcggtgc acgcgtccac gggtttcacg 4740 ccgttcttct tgaacggctt ccgccacccc agagtgcctc tcacgcttcg aggagacact 4800 gactcctcta ttctaagtgg gggagaggct cggaaagacc ttacctccca ggtctcggat 4860 gtgagaccag tttcgctgcg gaaacaggtg aaatccttta tggataccaa gctgaacatt 4920 gtcagcaggg tccgcgatgc catggcagcg gcccaagata aacaaaagga ctactcagac 4980 aaacaaggaa gaggaaactt aagtatattt gaggttggtg acttagtgtt gctagacacg 5040 aggaacctac ctctagacac tgttagctct gtcggcagca acaagctgaa gcaccgcttc 5100 atcggacctt ttgcagtcct ggccagacat ggtgcgtcgt acaccatcga ccttccaaag 5160 tcaatgacga cgcacccgac gttctatgtc ggacgtctta agcggtactt tgacccgcag 5220 ggggttgctg actcacagac cccccttgac ccagctcctc gaagcgagga ccggtcacag 5280 tcgttgacga ggtcgtcgga gcaggcaccc aagcctcggt cgggacggca aggctgcggt 5340 caagaccgta cgccggaggg gctccatacg aacggacccc ggcgccatac gccgagtacg 5400 ctgagtacgc cgggtacgca ccatacgcgt acgtctggga gtgtgccgca ggcggctccg 5460 gacgtggcaa caaagcctcg atccgtcgga tcatgcgaaa ggcctcgttc agatcggacg 5520 aagaggcccg gcgatccacc cgcaggtgca ggctcgcgac ctctcgctcc accaggtcca 5580 ggcggcccgc aagacgagcg agctcgctct gactcctggc ctgggcggca gcattaccgc 5640 cagtcccaag gccaagtgca atcgcaagca cgaggacacg ttgacggagg cggtcaacct 5700 cagagtcccg tgtcggaccc gcagtcggag cactcggacg agagtggctc tcgggaggcg 5760 ccgagtactc gtactcgtac gagggcacct ccgcccctgc ttgaccggaa tggagaagtc 5820 cacttccacg tggagcggat cctccaggag caacggtgtc gcggcaagcg acagctcctc 5880 gtgaagtaga gaggttatgc ccactccgag aactcgtggg agccgattga acggctcctg 5940 atttactgcc cgaaggctgt cgcaatctgg gaacagaagc ggcggcagct tcataagtag 6000 tccggggctt cttgcccgaa cggggtacgg tcgatgaata cataccgtac ccgcgctcat 6060 cgtgagcgct agaagccgcg cgcttcagga tgtcccttgg cagcatacgc ttgctgatca 6120 agtgggcaaa cctcacacga agatcacgct ggtccaggat gtgggacagc tgctgatctt 6180 catggagttc ccgtaactcc gtgggtgagt acttgagagt ctccacccac gcccagaaca 6240 tgtcctcaca agaactccac gtgagacagt tctcgggcat aacccagggg tatccccaaa 6300 caggatagag accaccccgg gtctcgggct tcttacgaca agtcgtgaag tccttaaggg 6360 gaatgcggtg ttgcgcgaga agcacacacc gagcagcctc caagttgtcg acgaacaact 6420 gttctttctg aacaagggct cgttcataga tgcccctaga agtgtggccg cccccaaggc 6480 cacgaggagc gacgagaagc tctaagaaga ggtcagcccc agagctctcc tcgggaggcc 6540 aataccctct tgagttgatg gcagctccct ggctgacggg tgccgccacc gaacccccac 6600 gcacacgctg ggcagcttgg caatcctcct gctgctggtc gaggtcattc gagacctcct 6660 ggggctcaac gatagcaccc tcctcttcct cttcttcctc cttctcctcc tcttcatccg 6720 aggagtcgaa gatactccga tagaagcgac gagcctcctt ctcctcgcgg agtggagact 6780 tagaggcagt acgcttcttt gagggcttgg caccttcggc tttgaaggcc ttagcacgcg 6840 caagaccctc ggcaagcgag agacgtttgc gaggattccc ttcctcatca ccaccagctt 6900 tgggagcgtc cttagccttg gcggccggac tctcagagcg cacagaggtc ctaggactgt 6960 gatcaccttg atcactagcg ggcgactgca cgctgtcatc tttgtgttca ctgggcactg 7020 ggttgtgccc tcccacagag cccgcaggag catcatgagt gctcccggac tcggcatcgt 7080 cctcactgtc cgagttgaac tcacgttcta cgaaccgagg gttcggacga ttgtctgaag 7140 atgagggcga cgggctgcgg cgcttgcttg cgcgcttgtc cacagccgcg tcacccgagg 7200 aaccgatcgc ctcggaggcc acctgagcag cctccttaag tgcagagcct ttgccgtgag 7260 gcttagtgct cttggcctgc gccttaccgg ctgcagcctt ggagcgtgtc ttagcaccgc 7320 tcttagcagt gccacgaggc atgttagcgg tcgaagtgga gacctagacg aagagcgcac 7380 aggttgctgc tcgaggcttt aactgtgaag tgagcctccg ccgcgctcat gcggccaagt 7440 cgatggtttt cgactttgag aatgagagtt tgcgacgaac acctcttgat tctgattggt 7500 cggtaaaccg aacctaagtg ggggagga 7528 // ID Gypsy-62_PIT-I repbase; DNA; PLN; 5024 BP. XX AC AATU01005792; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-62_PIT_; KW Gypsy-62_PIT-LTR; Gypsy-62_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5024 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005792; Positions 71175 76198. XX CC 'CATTG' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 392..1516 FT /product="Gypsy-62_PIT-I_2p" FT /translation="MTSLNPQGWSTDAITQKLIEMVDKQQQLLEAMSKREV FT KVEDIRLPEFHGMMGESVDLYFETLAQYFDAKNIDWQNDNQSSRILAITTA FT NFKGNAAAWYKLNKRDIKDMQDLMARLTDEFVPPDLQERLRDQLYALKQKF FT CSSLEDYISRFRETIMQVTDMSELDKITYFTRGLVSPTREEVQYRRCTTVS FT QAMKIALEYDRSQHVCGKNYRPPFFSQDRSRSQSNNNSHQKQATPMRAHEN FT EPEPMGIDSGSTRNRRSASSSSSNKRCRYCQKSGHVIEQCFKLKNKEKYAR FT KNRHEQSAANFNSSSPTTAAAERVSMTRSDDEVEVVEVEEISTSPCRPCIV FT RTSSFVNKGLVMGNLSLSCSTVVLRAMLFAQG" FT CDS 2008..3636 FT /product="Gypsy-62_PIT-I_1p" FT /translation="MKPDAVPSSRAPFRLSKVEQDALDLFVAEKLKKGWIE FT VSDSPWVSNIFGIPKEDPTSGHQLSRSEWVRSGNSTLPIRWVIDYRYVNSQ FT SIVPKIPLPRIDELFDQMSGCVIFSPLDWAQGYHQMRIALKSRKYTAFRTH FT AETYQWCVAPMGLAGMPGVWSRLMRVLLAKYRFIVVYLDDIFVFYTSLQEH FT VEHLQTLFEVRRRENLFCHLSKCHFGQSEVKFLGHTTSAKGLAVDTRKTEA FT IAKWPTPLNQKQLQSFLGLAGYYRRFIRDCAIIALPLGSLVKKEHVWSWGP FT EQTRSFEEIKSALQEAPVLQLPDYEKRFIVTADASGYCVGGVISQVRSGQD FT HPIAFFSKKLGPHEINWPTHEKERFAIKLALDKWRHYLYGREFDIYTDNTA FT CKWFLHHPKVSAKFARYLTFFAQFTFKLHHVKGHLNVVADALSRQSSEHAI FT NTVSFHQCTTRCHTRAARNLTNRRVITDYRSLNQHLVRPPSRPQFRGEDVA FT AGYYTRPVPTLAQLTAMYQWKLHVPSLRLRILLWPPTRASSNFELVG" XX SQ Sequence 5024 BP; 1238 A; 1229 C; 1169 G; 1388 T; 0 other; tctggtagca cttgctgttt ttcgtccagg agagggttct tcattctcta ttcgctacgc 60 gacacgtgga aagccgctcg ttgagcgtgt gtcgtcgttc ttcgtctcca catttgtaag 120 atttcttcgt tgcgacctca tttcatacgg cttgccgcgt tgaaattttg cgtgtgtact 180 gcactaagcg tctggtctat aagaaccgga tcaagttagt acccgtacct aacgtcgcat 240 ccttcatcag cgttatcgtt gattgcgtgt gtactgtaag tgtctggtct ataagaaccg 300 gatcaatgca gtacctgcac ccctcgtcgc tgtccatctg tacccgacta ccttttcggc 360 acgtcatcgc tgaattttac gacaatcaac catgacttcc ttgaatcctc aaggatggtc 420 tactgacgct atcacgcaga aactcatcga aatggttgac aagcagcaac aactgcttga 480 agccatgagt aagcgtgaag tgaaagtgga agatatccgt ctgcctgaat ttcatggcat 540 gatgggagaa tctgttgatt tgtacttcga gacacttgct cagtactttg atgccaaaaa 600 catcgattgg caaaacgaca accaaagttc tcgaattttg gccattacta ctgcgaactt 660 taaaggaaat gctgccgctt ggtacaagct gaacaagcgt gatatcaagg acatgcagga 720 ccttatggcc cggttgaccg atgaatttgt gcctccggat ttgcaagagc gtttgcgtga 780 tcaattgtac gcgctcaagc agaaattttg ctctagcttg gaagattaca tctctcgctt 840 ccgtgaaacc atcatgcaag tgacagacat gagtgagttg gacaagatca cttacttcac 900 acgtggacta gtcagtccta cgcgcgaaga ggtgcaatat cgtcgctgta caacagtgtc 960 gcaagcaatg aagattgctt tggagtatga tcgatcgcaa catgtctgcg gtaagaacta 1020 tcgtccaccg ttcttttcgc aggaccgatc acgctctcag tccaacaaca attcgcacca 1080 aaagcaagcc acgcctatgc gcgctcatga gaacgagccc gagccaatgg gaattgactc 1140 agggagtact agaaatcgcc gttctgcttc ttcttcgtcg tctaacaagc gatgtcgcta 1200 ctgccagaag tctggtcatg tcattgagca gtgcttcaag ttgaagaaca aggagaagta 1260 tgctcgaaag aaccgtcacg agcaatctgc cgcgaacttt aattcttctt ctcctacaac 1320 tgctgctgcc gaacgagtgt ctatgacccg ttccgatgac gaggttgagg ttgttgaagt 1380 ggaagagatt tccacgtcac cttgtcgtcc atgcatcgtg agaacgagct cattcgtaaa 1440 caagggactt gtgatgggaa acctgtcgtt atcatgttcg acagtggtgc tacgtgcaat 1500 gttgtttgcc cagggttagt cgctaacacc gctacgtctg gtgtctcaca agtcactcgg 1560 ttcgatggaa cttctacgaa agcgcgttat gtcaagaaag atcaagcgac tattgaatgc 1620 ggtcgctacc ttttccgaaa tcttcaagtc atggaatggt cacttggatc tgcccatgat 1680 gtcatcttgg gaaaaccttg gtttaccaag ttttagccat gtatcaattg gcgttcgcat 1740 gagatttcgt ttccaagtgt gtcttgtgca cctccatcaa cggttgctag tcaagcagct 1800 gtggagattg ctgctcttga ctttaaacgt aacgtgaaga aacatgtgta caaggaagtg 1860 taccgtgtca aaatttgtgc ggtcacgcca gttagtgagt cgactcctgt tccgatcact 1920 cacttattga agcgttttac tgacgtcttt ccggaaactt tactggatgg cttaccgcct 1980 tcacgtcgtg tggatttcga gctccacatg aaacctgatg ctgttccaag tagccgtgct 2040 ccgttccgcc tgtctaaggt tgagcaggat gcactggatc tcttcgttgc agagaagctg 2100 aagaaaggat ggatcgaagt ttctgattct ccttgggtgt ccaacatctt tgggattcca 2160 aaggaagatc ctacttctgg acatcagctg tctcgctctg agtgggtacg ctctggaaac 2220 tcgactttgc ctatccgttg ggtcatcgac tatcgctatg tgaactcgca gtcgattgtt 2280 ccaaagattc cactgcctcg catcgacgaa ctcttcgatc agatgtctgg ttgtgtcatc 2340 ttttcacctc tagattgggc tcaaggatat caccagatgc gtatcgcgct caagagtcgc 2400 aagtataccg cctttcgcac gcacgctgaa acttaccagt ggtgtgtagc tcctatggga 2460 ttggccggta tgcctggtgt ttggtctcgc ctcatgaggg tactccttgc gaagtaccga 2520 ttcattgttg tctacttgga tgacattttt gtcttttaca ccagtctgca agagcatgtt 2580 gagcatcttc aaactctctt cgaggttcga cgtcgtgaga atttgttctg ccatctctcg 2640 aagtgtcact tcggtcagtc cgaagttaag tttctcggcc atacgacttc tgccaaagga 2700 cttgctgttg atactcgcaa gactgaagca attgcaaagt ggcctacgcc actaaaccaa 2760 aagcaactac aaagcttttt gggtctcgca ggctattacc gtcgctttat ccgtgattgc 2820 gccattattg cgttgcctct tggttctctt gtcaagaaag aacatgtctg gagctggggt 2880 ccagaacaga cgcgttcatt tgaggaaatc aaatccgctc ttcaagaagc acccgtgtta 2940 cagttaccgg attacgagaa acgtttcatc gtgacagcag atgcctctgg ctactgtgtt 3000 ggtggcgtta tctctcaagt tcgttccggt caagatcatc cgatagcctt cttctcgaag 3060 aaacttggtc ctcacgagat taattggcca acacacgaga aagaacgctt cgctattaaa 3120 ttagcgttag acaagtggcg tcactatcta tatggtcgtg aatttgatat ctacacggac 3180 aacactgctt gcaaatggtt tttgcaccac ccgaaggttt cagcgaaatt tgctcgctat 3240 ttgacgtttt tcgcacagtt tacgttcaag ttgcatcacg ttaagggaca cctcaacgtg 3300 gttgccgatg ccttgtcgcg tcaatcttcg gagcatgcga tcaatacggt ttcgtttcat 3360 cagtgtacca cgcgctgcca cacccgtgca gctcgaaacc tgacgaatcg acgcgttatt 3420 accgactacc gcagtcttaa ccaacatttg gttcgaccac cctctcgccc tcaatttcgt 3480 ggggaggatg ttgctgctgg ttactacacg cgccctgttc cgaccttggc tcagcttacc 3540 gccatgtacc agtggaaact tcacgtaccg tcgctgcggc tgagaatatt gttgtggcca 3600 ccaacccgag cgagctccaa ttttgagctt gttgggtaaa caagctcaaa attggagctc 3660 gctcggttgg tctgattcga ttagaagaga attcgctgct cgatatcgca aatttcccag 3720 actgcggaga acgttttaag catccggaac aaccatttgt caaacaaaat ggtttacatt 3780 tccgcaagta tcagacgatg atgcgcttgt gtgttccgtt tactcgggac aatcatcttc 3840 gaacttccat catctcttgc ttccatgact ccaatattgc tgctcatcct ggagctcatc 3900 gaacgtacct tcgcatttcg aaatggtatc atgggcccac cttggaccaa gacgttcgcg 3960 attatgtgca aagttgtaaa acttgcactc gctggaaaca cagcaatgct cgcaagaatg 4020 gcaagatgat tcccattccg attcctgggg aatgctggtc tgtcgtctct atggacttta 4080 tcactggatt acctgattcc aatggttttg atgcaatctt gactgttgtc gacaagttgt 4140 ccaagcgccc gaagtatcgt gcgtgcaacc ggactgatga tgcacagaag actgcgtatc 4200 acttctttga ttgcgttgtt cgccatcacg gtttaccatc gatcatcatc agcgatcgag 4260 attccaagtt tgtctccaag ttctggtcat ccttggctaa gctaatggga atcgtctgca 4320 catgacaact tcctatcgtg cccaagccga tggacaagcc gtgcgccaga atctgattct 4380 ggaagacgct ctacgctgca tgatatcgta ccacggacgt gattggtcgg ataatctcgg 4440 aacgattgcg aatgctcatg ctactttcgt cagcgcatct accggtatgt cgccctttga 4500 agttgatact ggacgcaagg aacggaatcc gctgaatcct ttgagcaatc ccagtaccat 4560 gactcaaatt cagcgtggaa aatatatgca tatatttttc cacgctgaat ttgggtatgc 4620 ataacagttc caagacaaac gtcaagagat cattgatttg gcaaagaagc atcttcttca 4680 agcccaagaa cgtcagaaga agtactatga caagaagcga tcatcgatca cgttcaatgt 4740 ggacgtgttg agtcattacg ttgaaaacgt tttaagactc gtcctatccc aaaggcctca 4800 agactgatta ttgacgacga cactggcgca atgatgcaca tcatcgagaa gcttcttcgc 4860 aagcgtcaat tcaatcgcaa acctgaatgg cttgtgaaat gacacggatt accagatcac 4920 gaagcaacct aaagagcgcg aaaaagacat ccgccatgtg tcgcattgga aggttctcgt 4980 ttccgacttc aacaagcgtc aacgagaagt caagtccggg agga 5024 // ID Gypsy-6_PPa-LTR repbase; DNA; PLN; 1825 BP. XX AC . XX DT 11-DEC-2009 (Rel. 15.07, Created) DT 11-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-6_PPa-I; KW Gypsy-6_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1825 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 966-966 (2010). XX DR [1] (Consensus) XX SQ Sequence 1825 BP; 564 A; 227 C; 492 G; 542 T; 0 other; tgtgagccca aaagttggtt cacattgttg gttaaactaa aaaaatctaa aaaaaatgag 60 gattttgatt atgttttgtt ataataagtt agttatagac attaatgtta gtggcttatt 120 gatgattagt agtggaaaga aaaatcaagg gagaagggag tggtgggaaa gataagaaaa 180 agagccaaaa gaaaaaaaaa aaaaaaaaaa aaaaaacaaa aaaaaaaaca aaaaggccaa 240 gaagaaagaa ggaagaagat gaagagggac aaggagaaga agaagaaaaa ggagaagaaa 300 ataattagaa gtaaatttat tgtgatgggt ttgtcaaatt gttggttctt aatgatctag 360 aacttagatt tgggtgtatg aatagtcaaa cttgatgttt aaatatgttt taaacacatt 420 ggtggagtta gttttgtcaa aaaacgcttc gaattgggga ttttgggcat gtccagcact 480 aaaatcgggt ttaggactta gggttaatgt gggcccttga tcttgattag ggttggtgga 540 ttcggatggt ggagatgtgg ccgccaccct ttggtctctt cctacttgga taagagggtg 600 ggggtggcca cactcgctct ctctctcttt ttttttgggg gcgaagccat gccaaattgc 660 atccccacgt acccttgttt ctatagagct gcaattgcgc agctgtagtg tattagttat 720 ctggaaatag aacgtcaaac tttaccaata gttagatctt gtcgttagct tcctcgggac 780 agtaggcacg ctttgtttgg agagaaaaca agaaagttgt ggtggtttta gtgacaagga 840 ggtcagctgc cggccagatc tggaggtccg actttggaag gcgagtgttg gcggacagta 900 ttgaatttgg agctgaaact tttgtggggg atggttcttg ttgtcagctt tgcaaggact 960 atttgcacgc ttagattgag taaaggccaa ggaagttatg gtggttggag tgaagaggag 1020 tcggccgtgg tgaagatgta gcactccgcc aactcaagct actttggaag gtcatatctt 1080 ggaattcact caagattttc aagaaaaaat tgttggaggt gatgcggctt caattctagt 1140 ttctggaatg ctaaagcata tgcgttgcac aactggaatg gagcaagggc aagggttttt 1200 gtggccaggg gtgctctgac taggccgaga aagtcaggca actttgaggc aagatttctc 1260 ttagcttaat tgttgttttg cattgaattt tgttggagga caagcgcttg taagtctact 1320 ttctaaaata gcaaagcttg ttataaacaa gttagtgatg caaccattgt agtggaattc 1380 gtgcaagggg gtcgctacca tgacttggaa ggtggcgact tccaattttc tttaattttt 1440 aggatgaatc ttggatgaat taggtcaatt gcacgaattg tcagttggat gataagttga 1500 cttatggttg gatgaatgaa tctttagatg aaaattggat gaacaaactt tgaatgaatg 1560 aatgttatag gatgaatgag atttaaggga tggatgattg atgaagggaa atttaggatg 1620 aatgaactta gggtttatgg atgaacttag ggtttatgga tgaacttagg gtttctggat 1680 gaacttaggg tttctggatg aacttaggat ttatggatga acttagggtt tatgaatgaa 1740 cttagggttt ataaaaattg cgtgtgagtg aagttaatcc acttgactac taaacgcaat 1800 taagggtgga ggaatttagc tcaca 1825 // ID Gypsy-29_PSo-I repbase; DNA; PLN; 3626 BP. XX AC AAQY01000515; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-29_PSo_; KW Gypsy-29_PSo-LTR; Gypsy-29_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-3626 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000515; Positions 30047 33672. XX CC 'CAAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 486..2687 FT /product="Gypsy-29_PSo-I_1p" FT /translation="MSGRYYDEEYGSRAWAEPAERDVGDGEGRWFETGTDD FT EEEGFVGENGCYEDDKLNLECTMLKLIPFFNVRNASTESARDFWWCFETAT FT EGFDDPVRLRVFAARMNGDVAERWCLSSRWGDFETLKRRFYHRFIRLSEEQ FT LLQRLCDAVQERDDPVDEWGLRVARYCDEAQWFNESMRYTVFKNGLRSERV FT QRCLDCLPIHSIEVACEWVVAKELHRPVRGDWDVEGQARGCASLGSGYGGR FT SGSYGVHGSSTKNGLAAQLNVLTDMMKAMQSEMERSLEELHGHGQAVHNSM FT DEEDEGAEFESGHACDAGYDESYVYGRTPDDRGLGQGIHRWMVEKEDEGTE FT FKDNQAFVAGDGESRWYGQAPEDHGAAIDAGYDEEELHGHEHAAQNWMVGE FT DEAAEYGDDQEFDAVYGESCWYGRAPEEPGAATVADRDEPEWYGQAPVDHG FT ADGDVAYGELKWYGQEQHGHDGATEDTEREGHWFGASTGEGEAEIECEFEV FT AEDNGRGVADEASGNGGVLGQHGGRVAGGASDEDVDEGKSSYTEAEHGPEV FT LLQKVKNGMVAECLEKCVSLETVVGEVGTVVAPLVRLVESKTVSCQEVEVE FT AVSEEHARTVTRTDEEERFGAGVKSSVGQGAGDVEDVGTIDEEGFDTVVTV FT TSCQDGQVSEEDDEKWAMVNFVPLGSKTVICGDYGVIAGRSSGLVYGCELE FT NCLSKDGWVQVEAIPVIESWCVVPPERDKPVRAW" XX SQ Sequence 3626 BP; 855 A; 670 C; 1341 G; 760 T; 0 other; cgtggtggag aagcagggta ttgtcgtcgc cggagaggcc atctgtgctg gggagtgaat 60 gttggtgttc gtcgaaggag aagaatggtg cggagatctc gtggaaggct ggtgcagaag 120 ctatggaacg gtcggttttt cggagtcaag ttggtgaaga tcctggagaa aagagtcgaa 180 ggccacgcat ttgtcgcgtt gaaggcctga tcgagtttga gtcggaagtt tgtgttcccc 240 ccgagtgaag aagggctgcg gaacggtcgg ttggtttggt ggagtcggac taaggagata 300 acggtgagaa gcgcttcgag tggttgacaa ggacggtgta cgagtgaaga tccgcgagtt 360 ggagacggtt gttggtaagc tgaaacggtt ggagaaaacg gtcggtgtcg gaagaagaac 420 ggtcgccaag gatacggcgg cgtgagaaag acgattggag tgaggtgtcg agcgttctgg 480 agagcatgag cggacgctac tacgacgagg agtatgggag ccgtgcctgg gcggagcctg 540 ctgagcgtga cgtgggcgac ggtgaaggac ggtggtttga gactggaacg gatgatgaag 600 aagaaggttt tgtaggtgaa aacggctgct acgaggatga caagctgaac ctggagtgca 660 ctatgctgaa gctgattcca ttcttcaacg tgaggaatgc gagcacggag agcgcaaggg 720 atttctggtg gtgctttgag acggctacgg aaggattcga cgatccagta cggttgcggg 780 tctttgcggc acgaatgaac ggtgatgttg cggaacggtg gtgcctgagc tcacggtggg 840 gcgacttcga gacgctgaag cgacggttct atcatcgctt tatccgtctc tcggaggagc 900 agttgctgca gcggttgtgc gatgctgtgc aggagcgtga tgacccggta gacgaatggg 960 ggctacgtgt ggcacggtat tgtgacgaag ctcagtggtt taacgagtcg atgcggtaca 1020 cggtcttcaa gaacggtctg cggagtgagc gggtgcagag atgcctggat tgtctcccca 1080 tacactcgat cgaagttgca tgcgagtggg tcgtggcgaa ggaactacat cggcctgtgc 1140 gtggtgactg ggatgtcgaa ggacaagctc gaggttgtgc gtcactaggc tccgggtacg 1200 gtggaagatc tggcagctac ggtgttcacg gctcgtcgac aaagaacggt ttggcggcgc 1260 aactaaacgt tctgacggat atgatgaagg caatgcagtc tgagatggaa cggtcgctgg 1320 aagagctaca cggtcatggg caagcggttc acaactcgat ggacgaagaa gacgaaggcg 1380 ccgagttcga atccggtcac gcgtgtgatg ctgggtatga cgagtcatat gtgtacggtc 1440 gcacgcctga tgatcgcggt cttggacaag ggatacaccg ctggatggtc gaaaaagaag 1500 acgaaggtac cgagttcaag gacaatcaag cgtttgttgc tggtgatggt gagtcgcgct 1560 ggtacggtca agcgcctgag gaccatggtg ctgccattga tgctggctac gacgaggaag 1620 agctgcacgg tcacgagcat gcagcacaga actggatggt cggagaagac gaagctgccg 1680 agtacggaga tgatcaagag tttgatgctg tttatggcga gtcgtgctgg tacggtcgag 1740 ctccggaaga acccggtgct gctactgttg cggatcgtga cgagcctgaa tggtacggcc 1800 aagcgccagt tgatcacggc gctgatggcg acgttgcgta cggtgaactg aaatggtacg 1860 gtcaagagca acatggtcac gacggggcta cggaagacac tgagcgtgag ggtcattggt 1920 tcggggcatc taccggtgag ggcgaagctg aaatcgagtg tgagttcgag gttgctgaag 1980 ataacgggcg aggagttgct gatgaagcaa gcgggaacgg tggtgtacta ggtcaacacg 2040 gtggtcgtgt agcgggaggt gcatcggatg aagatgtgga cgagggcaag tcgagttaca 2100 cggaggctga gcacggtcct gaagtgttgt tacagaaggt caagaacgga atggtcgctg 2160 agtgtctgga aaagtgtgtg agtctggaga cggttgttgg ggaagtggga acggttgttg 2220 cgcccctggt acggttagtt gaatcgaaaa cggtgagctg tcaagaagtc gaagtggaag 2280 cggtcagcga agagcatgcg agaacggtga caaggacaga tgaagaagaa cggtttggtg 2340 ctggagtgaa gagctcggtt ggacaaggtg ctggagatgt tgaagacgtt ggtacgatcg 2400 atgaagaagg cttcgacacg gtggtaaccg tgacttcgtg tcaggacggt caagtttcgg 2460 aagaagacga cgagaaatgg gcaatggtga actttgtgcc tttgggaagc aagacggtca 2520 tctgtgggga ttatggagta atagcaggaa ggagttctgg actggtctac ggttgcgagt 2580 tggagaattg cttgagcaag gacggttggg ttcaggttga ggcgatccca gtgatcgaga 2640 gctggtgcgt ggtgcctcct gagagagaca aaccggtgcg agcatggtag ttcggtgtgg 2700 tcaaggtcca agggcctggt gcgactcggt tgtgaggctg tgttatcgac tggaaacggt 2760 ttctcagagc gggatccggt gtaatcagag tgaggtgtgc tttagtcccg gtcggggagc 2820 ggtcagtacg gccaagcgat ggagttgcta cagtcgagga gcttacattt gaacgacgga 2880 tgcagtttgt acggtccgcg agcagtgacc acgatggagg tccgttgccg gtcattcaga 2940 acggtgcttc atctccgggt gatatgcagt gacggtcgaa ggagagcggt tcaacggtga 3000 catgatgagg tgtacggtct attctgcacg gaagtttgcg cgacaatagg gactcgacga 3060 acggagggct gtagcccgag attgtgcaaa cgctttggtc agggagcgct gcctggtcgc 3120 gctccacagc gaagcgagtt ggaggcacgg tcaaccgtgt gtccaggagg agtgtgcgat 3180 cacgcggtga agaatcggtc tactgtgacg tcgcttgtgc acaagatctt gagaacaaga 3240 agttgctggg gctgttgcgg tgagtgagcg agctggacag gacaagtagc tacggtcgaa 3300 gaacatgaag tggaggataa tgatctgcag aagcggaagc agagtcgatg gagggggcgt 3360 ttgagtaccg aagaacggtg gagagcggac ggtgaactgc tggcaagaac tcaaggacag 3420 aacggtgaag gaaacggtct gcgtgtttga atttgaaatt gacgagggac gcgtggagtg 3480 agcagaaaga agacaacggt gaagaaagcg tccctattac ggtgttcgtg taaatggtgg 3540 gctgtggatc gagcgtctcg tcacgataaa aagagatggg cgtttggaca gctcgacgag 3600 gacgtcgagg ttttggtcgg ggagga 3626 // ID Gypsy-3_PIT-I repbase; DNA; PLN; 9070 BP. XX AC AATU01002995; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-3_PIT_; KW Gypsy-3_PIT-LTR; Gypsy-3_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-9070 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002995; Positions 84372 93441. XX CC Positions [7827-8333] - Integrase core CC 'GTATC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 51..1088 FT /product="Gypsy-3_PIT-I_1p" FT /translation="MVFNEENQTTGGHSSGETQISSERTKTIDLLNVPRAP FT QPIFAVIVAPLVTSTSREALLEWLKLRKDYEEATKERCKDGKEDFNAVLKS FT VRSSFDSDLLTTLCEASWGIEKSDLTDNFLLEKIHEITDNYQNQALPPVNE FT LFLDELIMNMSNPDIQSRVTDYFLSCNRLIRKYGFTSFFEGAKGAKKKCKL FT LVNLLPGSLKEKVKNEIDNRTPEAQSNVLKLSNLINQQALEQAIEYRALKG FT GRDSTRKSTAREQQRGSQNNKKRQNEWKPQQHKEKKVKKADTRKVERQFET FT KEQSRTKGILKDGCFNCGGPHYLSACPSATKEDRDQHTSKQGQKSERPPAG FT RHR" FT CDS 6864..8888 FT /product="Gypsy-3_PIT-I_2p" FT /translation="MKEMLTMSATLAFPKEGATMCLLTDASDVGWSVVASQ FT VVEWLPGKEVYAPPHELLVCLSGSFTGSQCNWSIIEKVAYPIVCACEKLSY FT LLLREGGFKLYCDHRNLVYVFAPGKEVKKHIWGKLLRWSTKLMEYRYEVEH FT IDGESNVWVDMVSRWGGNDGSAVHLNAKTLRKRRSVESPAKPQPHRKRRKK FT AEPRSGDKLVHTQPHQHHLRPLDDPDFIWPSVTVIIEVQRQHAASRPAVAV FT GNAEQGWFIKDKMWIPRKVTDLVQRLLVVAHCGPQGHRGRDAMLECVSRYF FT NVQHLRACVERFLDACLMCKHVKGGKTIQRPWGPTFRTNERNGALHFAFLT FT LSGTFAGDRYLLVLKDEATHFTELVPCATPTSTVVVGAILAWYSRYRLAPV FT WISDQGSHFKAEVVAELCRRLKARHEFTVVYSPWINGSVERVNRDIMQVLR FT VLCLEYLVDTHDWTFFVPILQSSLNHTPVPSLGNRAPVELFCGLPLPSPLT FT LCMDTRQKKILELPEQPEAITNWLDTLRRSIHELHKPMVSERAKQTERNKH FT MQKYARRSNFDVGDFVLRSRVDQKHRDKLLVTWVGPYQVTRADQHSFRVRH FT LLTGDETDVHPSRLKFYADKSLLVSEELRDHVAAQGIVLSVEKLKETRWNK FT DKKTMKCWLAGKGSSRSKTRGNQPSN" XX SQ Sequence 9070 BP; 2362 A; 2236 C; 2318 G; 2154 T; 0 other; aagaattctt tagttgcaag gttttgcgac tagaactgaa caagaacaag atggttttca 60 acgaggagaa tcaaactact ggagggcaca gcagtggtga gacgcagatt tcttcagaga 120 ggacgaagac aatcgacctg ctgaatgttc cccgggcccc acagcccatt tttgctgtta 180 ttgtcgcacc tctggtgact tccacatctc gtgaagcctt gttggagtgg ttgaaactcc 240 gcaaggacta cgaggaagcg actaaagagc ggtgcaaaga tggaaaggag gacttcaacg 300 ctgtgttgaa gagtgtgcgg agctcgtttg actcggattt gctgaccaca ctttgtgaag 360 caagttgggg catcgagaag agcgacttga ctgataactt tcttttagag aagatccacg 420 agattacgga caactaccag aaccaagcat taccgcctgt gaatgaattg tttctcgatg 480 agttgatcat gaacatgagc aacccagaca ttcagtcacg ggtaacggat tattttctct 540 cgtgcaaccg acttattaga aaatatggtt ttaccagttt cttcgaaggg gcgaaaggag 600 ctaaaaaaaa gtgcaaattg ctggttaact tgcttccagg gtctcttaag gagaaggtca 660 agaacgagat tgataatcga acgcccgaag cgcagagtaa tgtgctgaag ctttctaacc 720 tcatcaacca gcaagcgctc gaacaggcga tcgagtatcg ggctctcaaa ggaggcagag 780 actcgactcg caagtcgaca gcgcgtgagc agcagcgagg gtcccaaaat aacaaaaagc 840 gccagaatga gtggaaacca cagcaacata aggagaagaa ggtgaagaaa gccgatactc 900 gtaaagtcga gagacagttc gagacaaagg agcagtctag gaccaaagga atactgaagg 960 acggatgctt caactgtggt ggtccccatt accttagcgc ttgcccatcg gctacgaagg 1020 aagaccgcga ccagcatacc tccaaacaag gccaaaagag tgagcgacct cctgcgggga 1080 ggcaccgcta acctccgacg cctagctgaa tgcctgccag tacaagcgcg ctcacttgtg 1140 ctgaaagaca ccttctcggt ggcattttgc gccgatagtg gtgctgacag gtctagaatc 1200 agtatgaata tttcgaagaa tttatgaagg tttgtccgga agcggaacta gtgcagttga 1260 aagaaccgct tgactgtata ggagctgatg gaaaaccaat tgaagtgact aagactgtga 1320 gcctacattt gagactacgg actgctgccg gcagtgttcg tatcgctaaa ccggttgagt 1380 gcctcatcat ccctggtgat gcaagcgaat ttttgttggg gaatgacgtg ttgacgatgt 1440 tggggattga cgtgcatcga gagcttgact tactcgatgc caatactgtt cggagagggc 1500 aggatgatga atttgatgag gtcgatgagc caaaaattgg tagcggcggg gaaataagtg 1560 aagatgtagt aactgccgtc gagggtctag taacagaagc tgtgaagaaa ggatttccat 1620 tagaacacac atcggaactc cggcgaatag cgagccgctt tgacatctgg agatcgacac 1680 ttggaaatgg cccaccggct tgtgtggcgc caatgaagat tcgccttagg gaaggaacca 1740 aaccgtatcg ctgtaaagcg cgacgatacc cacctgaggt gaggaaattt cttgacgatt 1800 tcaacgacga gttagtgcgg ttaggctggg tatatgaaaa tactgagagc cgatgggcgt 1860 gtcctgtctt accggctcgt aggagcggtg gagagtatcg ccaaacagcg gactacaaac 1920 ctgtcaacgc cgacatcgaa gcgatcgtcg gtgtgatgcc ggatctgaat gtggacttgg 1980 aggatgtaaa aggtgctaag tttttcggtt tatccgattt cattaacccc cccccgtcac 2040 gagagcaaat cgtaagtgca cccccctaac ctcatgcttg atatcaagca tgttaacgac 2100 tagtgataac aaggagtttg tatgtggtaa aaaatgaacc atatccgcct ctcagtacaa 2160 agtcaccctt tatcactgtc catgtgacca cacgcttcct atcgagcttg ttctgacgtg 2220 gtatatagct gcatgttaga tatagagcaa aacgatttgg cctttttaca aggagagtct 2280 ttctttatct aaatcgagtg caaagaatac tgcgaacgtc ttgtactgaa gtgcaaaagt 2340 aatgcaaaac aaacactagc agctgattgc acatcatgtg cctactcagc gttggtgcca 2400 ccctcgctac tgccttcatc atcgccagcg atctcacctt cactcgcagc gccaccttca 2460 gtcgaagcct caccagcgtt gcctaccttc ttccccgatg gcctcatttg aatgccgcga 2520 ccgcagcgag gcttagggcg gtcgcgacca ttcctccaga ggtcgtgcca gatcgcgtag 2580 catgtccacg tgttgcccgg gtaatgaccc tggcgcactt tatcgcacaa gtacaatctg 2640 caatagctat tagtaagtga tgaagaatca atgcatttgt aggcttacct cttgttcccc 2700 ttactgcacc ctggacaaaa gaaccgcgtg acctggcgct tgctgctcac tgtcttgcga 2760 attgtacaca ccttacactg tcgttggcgg cgcttccgaa taccgttcac ctccacccac 2820 tcctcgtcca tggccaagct gtggccttcg gagcttgtgg cgtcacctcg acttggcgtc 2880 actggccccg gtgagttcat ctacaataga ccaaacagca ggaaattaga ataaacaaga 2940 aataaatgct ctgccagccg taccgtgttc acaaattccg ttgggcccat gtccagtaac 3000 tgcgcgtgga gctgggaaat caagcctgcg tggtcagcgg cgggttcacc tctcattttc 3060 cttgcttcgc gaaatacgat aaagctattc acaatagcaa tatcaaatag gccaaatgcc 3120 agacttttgt agtacttgcg gaagcgcaag gagagctgca gcgagtagcg ttgcagccgc 3180 aactggtcgt gcacgtccac cccacccatc cagcgatgat atgccttcat gctggacggg 3240 caggggaccg attctttctg accttggctg cgaggaatcc gacgctctat cgcactatta 3300 caatacacaa tacgtaccgc aagttgacat cgaggtgctg gccccgcaag ccagcatgta 3360 gactatcgtg ttgtcgaacc agaccaaagc gctgagctgc gggaccgact tgaaggcaac 3420 tatttgtgtg gagccccgag gcactgactt ggggcgatgc ttctgtggtt gcttgagcat 3480 tgatgggaag cccatcttgt tagtctgtat ggtgccaaca aagtagacgt tccgctcaag 3540 aagctgcagt gaaatctgga tggaagtgta gaaccggtcg gttacgacca cgtagaaaac 3600 accatcgcgc ttggctgata gaaccgcgtt caggttgcgc agtgttgcgg caggaccaga 3660 gctggaatct gcaggtgcgt catcattatt cttcttgcct ttcgttttct ttccgcagta 3720 cagctcgagt ctgaatgttc acaacataca ccacaggtta gaaatcaatt atatcaaatc 3780 acccatcaag ctggatatca agtatgtgag acttgtgaaa ccaaaaaaaa accatgtccg 3840 ccggtaggca gacatggtct agtagaaggt ctacgtggcc gctcgacaca cgtagccggt 3900 taggcagcat gagcgtgtta ggataaacgt accgtaaaca ataggcggat tcaccacagc 3960 atgtcatgaa caacttggtc ccccacctgt gcggtttgtc cttcatgaat tgacgtgttg 4020 ggttgtatcg actctgcgat ggcagaatag cctcgtcgaa agcgataaaa ggtgacggaa 4080 tgcaaccggc caggaacgtc ctctgcaaca tgtcccgata taaggcgaat cttccatccg 4140 gggtcggacg ccgcttcatc cgccatgtta tctgaaaagt ggaggaacct cagaatacgc 4200 tagaagcgct cccgcttcat gtatctgcca aatgttcctg ctggcacaac accaactgat 4260 gtagtggccc agtgatccga tactctgcgc ctgtgcgtgc acatcattcc ccccaacaac 4320 aatccgatac actgcaggat ctcgtgagcg ctaatttcgg aatgcacgcg cctctcattt 4380 gcgtaaattt gctccagcgt aagcttgttc agcccagtct gcgactcgaa ttttttctgc 4440 attcgttctg gtagcttctg tttttagtag cggtaagcct ccttagccac actcacccaa 4500 aaatccctag gcaaaaagaa cataaatagc tcgagtggag attcagcaca agctagtgct 4560 tcggctgatg gtccatactc cccattatac aatcctggaa agtcttcagt atctgggaat 4620 gcattaggat ctagacacaa atgaaataca caaatcagca tagagaccac acagtaaatg 4680 agcgaaaaca tacccgtttc tcagccttcg gttcgcatac gtttcagtgc gtccgcgtca 4740 tgggcaagct tgctcaaatc gctgccttca atgactctcc cattatcaat gatatcacgc 4800 caccgctctt gctctgctct atcaccaccg tttttgcttt tcctcttacc ttttgccacc 4860 ggtgtacact cgacttcttc actggattcg ctgtcgctgt cggtgaacgt ttccgttacc 4920 ggcacatcgc actcatcctc aaactactca gcagatccac aatccgagcc ttcatagtct 4980 gaatttagac caccgtcttc atcgtcatcg tcgtcagata cgtcgtcatc acgggtggca 5040 gggttggttc tgaccgacgt atattctgga cttgatagca tactcaggct cctacaccac 5100 acgaagcata tacagtatgt cagaagatta cgcagagatc acatgtttga tatacagcag 5160 tatcaataaa gcgacttacc tggcagcatt gcttcgaagt ggagtacatg taggcgctgg 5220 ctgagcacac ggtggagatg aaccagcatg ttcaaaatcg tgtccggaat tttcttcact 5280 gctgcataca taagtcaaaa ccaagtcaaa ccacaacaaa tgaaataaaa tacaaatgcc 5340 agcattacct gctttcagca cgtgaaagaa caacatgtgg gctctggttt cgtgtcggcg 5400 tctgcgctgg tgttggcgtt ggtgtctgca gtggtgactg cactggtgac tgcactggta 5460 accttctctt cttttttggc gcacgcttcc cttaacgttt tcgtacacct gccttccgtt 5520 tacctcgagc cgacttgttc ggcggcagca gtaactcctc tgcatcgatc acctcttctt 5580 cagctacata atcttcatca tcttcctggc cactctcttc ttctgcttcg gcggctttct 5640 ctgccagctc ctccgcatag aaagcagctg caggtgcctt cccctgtagt cgcggatatt 5700 tagctaaagc attatagcaa tttacaagcg cacctttctt ctgcttcttg ggcgagcctt 5760 tggcttgatt gagacagtca tgcgtgggcg tctaccggtt gtaggaggcg gcggcggtgc 5820 taataacgtg gctccgtcgc cgttcccgaa gtttgcatct cggtctcgtg ttcccgcgat 5880 gtactcgcgg tgttcacgca ctaggcgatc cctctcctcg ccgtcgtagc cgctcaggcg 5940 gcgcatgaaa acctctgcgt cgcggcgcgt aacgcgacgc ggtggagcca ctttcgttgc 6000 ggcttagtgg cttgcgtatg acagcggcga gttcgagaat gagtggatgg cagccacaaa 6060 cacgatgtcg tttggaccag gcatgtctca aagtagtgta tccacagaac tttctatttg 6120 acgaaatcta accaaaccct gtgcaacaat gtcgtaaaaa atacaaattg accttttccc 6180 acatttccca catgcttgat atcaagcatg tgggtttttg agacaagctt ccttatcaag 6240 ccttagtaac ggaggggggg ggggggttaa aggcaattgg caactggcct tagccgagga 6300 gtgtcaagag tggctctctt acatgactca ccggaaagtt tacacgcctc gcagggtgcc 6360 tcaaggatgc accgacgcag cactcttttt ccagtcgacg attcagaagt gtctggaaga 6420 gttattgcac aagcatttat tagtgtggat agatgattta cccctgttcg caactgatgc 6480 ctccgcctac ctcaccaagc tcgagagatt gttcgagttg ttggatttct ttggtttcaa 6540 gattagcccg aagaagtcaa gcctatttga acaagaggtg cgatggtgtg ggaaattaat 6600 caatggcgat ggagttcatc atgacccgga tagaattcaa gcactgcaag cgctgcctta 6660 cccaacgaca gcggcagagc tgcaacaaat ttttatgcgc aacgaattaa gtgagggatt 6720 cgctcgtcga ctacgcctgg aaagcccgtc cacttcaaga tgcgttggac actgcgttag 6780 cgcgagcctc caggaggacg aaacgtgttg cagcagggat tgcagtggaa cttactaaac 6840 aacaacgact agcatacgac tcaatgaagg aaatgttgac tatgagcgct acgctagcgt 6900 tcccaaagga aggcgcaacg atgtgcctgc tgacagatgc ctccgatgtg ggttggagtg 6960 ttgtagccag tcaagtggtg gaatggctac ctggaaaaga agtgtacgcg ccgccacacg 7020 aacttttagt atgtctgagt ggaagcttta ctggatcgca atgcaactgg tccataattg 7080 aaaaagtagc ttacccgatc gtgtgcgctt gcgagaaatt gagctattta ctcttgcgcg 7140 aaggtggttt taagctttac tgtgaccacc ggaacttggt ctacgtattt gcacctggaa 7200 aagaagtaaa aaaacacatt tggggcaaat tattgcgatg gtctactaag ttaatggagt 7260 acagatacga agtggagcat attgatgggg aatcgaatgt ttgggttgac atggtgtcgc 7320 gctggggagg caacgacgga tcagcagttc atctgaacgc taagactctc cggaaacgaa 7380 gaagtgtgga gtctccggcg aagccgcagc cacaccggaa gcgccgtaag aaggctgaac 7440 ctcgctcagg tgataagctg gtgcatacac agccacatca acatcacctt cgtccgctcg 7500 acgatccgga tttcatttgg ccgtcggtca ccgtgataat tgaggtgcag cggcagcatg 7560 cagcgtctcg accagctgta gctgtaggca atgccgagca gggttggttt atcaaagaca 7620 agatgtggat cccccgcaaa gttaccgatc tcgtacagcg gctccttgtg gtggcacatt 7680 gtggacccca gggtcaccgg ggacgtgatg caatgctgga atgtgtcagt agatacttca 7740 atgtacaaca tttacgagca tgtgtggagc ggttcctcga tgcgtgcctc atgtgcaaac 7800 acgtaaaagg aggaaaaact attcaacgac catggggccc tacttttcga acgaatgaac 7860 gaaatggagc actacacttt gctttcctga cgctgagtgg cacctttgct ggtgatcgct 7920 atctcttggt actgaaagac gaggcaaccc acttcaccga actagtgcca tgcgcaaccc 7980 ccacgagcac cgtcgtggtt ggggcgattc ttgcatggta tagtagatat agattggctc 8040 cggtgtggat ctccgatcaa ggatcgcact tcaaggccga ggttgtagcg gaactttgca 8100 ggcgtttgaa agcacgtcat gaattcacgg tggtatactc tccttggatt aacgggagcg 8160 tagagagggt aaaccgtgac atcatgcaag tccttcgtgt gctgtgcctg gagtacctgg 8220 ttgacacgca cgactggaca tttttcgtgc cgatactgca gtccagtttg aaccacacac 8280 cggttccatc ccttggaaat cgggcgccgg tggaactctt ctgtggattg ccactaccgt 8340 ctccgctcac gttatgtatg gataccagac agaaaaaaat tctagagcta ccggagcagc 8400 ctgaagccat aacgaactgg ttagacaccc tccgacgcag catacatgaa ctccacaaac 8460 cgatggtcag tgagcgagca aaacagacag agcggaacaa acacatgcag aagtatgcac 8520 gtcgatcaaa cttcgacgtc ggggactttg tgttgaggtc ccgagtcgac caaaaacatc 8580 gtgataagct cctggtaacg tgggtgggac cgtaccaagt cacacgggcg gaccaacact 8640 cttttcgtgt tcgccatttg ctgacaggag acgagactga cgtccaccca tcgcgactaa 8700 aattctacgc tgataagtca ctgttggtca gcgaagagct gcgagatcac gtggcagctc 8760 aaggtattgt actatcggtg gagaaattaa aagagacgcg ctggaataag gacaaaaaga 8820 ctatgaagtg ctggttagct ggaaagggct cgagccgatc gaagactcgt gggaatcaac 8880 caagcaactg agcagggata taccagtgct gctgacagag tatgcagcta ctacgaacaa 8940 cagaaagctc gaacagcaca ttgctgctga aacaaagctc aagcctaggt caacagaccg 9000 accgtcactg aaagcacaac agaacgtgca gcacgaagga ccgtgagtgg acaaaggctt 9060 gggagggcag 9070 // ID Copia-18_PIT-LTR repbase; DNA; PLN; 593 BP. XX AC AATU01002883; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-18_PIT_; KW Copia-18_PIT-I; Copia-18_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-593 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002883; Positions 126572 125980. XX SQ Sequence 593 BP; 140 A; 161 C; 141 G; 151 T; 0 other; tgtgagctat aaaacttacc tgcgtgtcga gcgccagtgc attgcagtct gccagtgtcc 60 ggtgccccca tctacgagcc accgtccact gccagtgtct gcaaagacac atcccaagga 120 cactcatgcg cctggcagtg cagattgcgg ctgcactaca accggctaca ctgagtacac 180 atgcgtgcaa tggcgaagga ctatatcaag gactgtatgc acaaggacat cgttggctgt 240 gcgctgccaa gatggtgtac tcaaacgaga gtgcatttat ctagagttta gtattgacct 300 atttgctatt tgtatactaa tctacttttg cggtacagcg gtgttctggc ggaggctgct 360 ccacactttg cgttttgacg cctgccgctc atcagagagc agcagagaag agcagcctcg 420 ccagacaccg cagtcctgtc gcggcctttt gcccggcact tacgtgttta cgttacttcc 480 tgattagttt cctaaagttg acatttaagt gtatttacat ttaaatggct cctactctta 540 gaagcgatcg acacatggag aacaatcccc ccgtgacgaa ccctacgtca cca 593 // ID Copia-51_PIT-I repbase; DNA; PLN; 4389 BP. XX AC AATU01007073; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-51_PIT_; KW Copia-51_PIT-LTR; Copia-51_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4389 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01007073; Positions 5017 629. XX CC Positions [1436-1936] - Integrase core CC 'GTAAT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 890..2419 FT /product="Copia-51_PIT-I_2p" FT /translation="MTNTMAEFCEYRGLNRNLNITIASGQSLPAQGVGAVR FT YRVNGRLIKITDVLYVPGLDRKLLSIPALAAKNVEVSFSASGCTIRFGGET FT LALVPKIGKLYAWNVQVQHAAGYEGTATAMMARPTDAALWHTRLGHVAQQR FT LDAIWKAVEGVPALPQDNRGLCDGCAQGKMTVSPFARQSSSRVKTRAPLEV FT IHSDVMGPMQTRTKWRARFVVTFVDDFSRYVHVYLLKSKAEVLKHFVRFNQ FT LAETQLQRRVKCIPTDNGGEYTSKQFTSFCFNQGIVHQTTAPYSPQQNGLA FT ERMNRTIVEMARSMLHHMQLETCWWGEAVVTATYIINRIPNSARPASTPFE FT NWFGVKPWLDHLRVFGAQGYVHIDQSKRSKWDRKAHRCIFLGYTDASKTYR FT VWDLEDERLVVTRTLVLDERPPSEYRSHRCSTEAPNMVNYNWDECSHSPIS FT PPIPRDSDDPADMEIDCDGTPAEPMQVDSGDKNRAWTLSGPSQVSVRPVLA FT TQDQSQFRGGGEMI" FT CDS 2419..4374 FT /product="Copia-51_PIT-I_1p" FT /translation="MMMPPDQPLLGNRSNLGCLVQRQSNSAASFHHPRSPG FT KQLVVRNHPRNLTTERQQLLTSGSSSQEALLLPGPNGGPRHDDRDDSYLAP FT GLRELVNSDVQELPALPPPTDPEDESDEPDPKRPRLGSYEIALAAAEGVPT FT SYAEAIRSPDADKWREAVRAEIRSHVRNHTWDLVRRPHGAKVIGCKCVFAL FT KRDEHGNIVRYKARLVALGFLQTYGIDYRETYSPVASLNTVRVFLAVCCSK FT NYVVKQYDIETAFLNGDLEEEVYMAVPSGIKTSDGMVCRLRRSLYGLKQAA FT AVWYKKIREVFLRMGFQQCGADVCLFVKESGEDGPVFIVLYVDDLLIGCKN FT DEIAEEVTKKLAEHCTVKTLGDARFILGIQVQYDRDNGTLLLSQEQFIQRM FT ITKFGQHEAYPMRNPCIPGQDLRFDTNSSDNKSNAPYRELTGSLLYVANAT FT RPDICVAVNELSRYVATPQALHWRAAVRVLRYLKATPRLSIRYSRTTSKGC FT TIATYTDANWGGDLETHRSTSGVLILMAGGPVIFRSKRQQTVALSSAEAEY FT MALSLAVQEVLWLRHLLKEMNLKVIGATTIHIDNKSAISIAKNTGYSPRAK FT HIDLRYHFVRDHINKGDIALEYVPSTLQLANYLTEPLPTPQFTRLLDRSGL FT MTE" XX SQ Sequence 4389 BP; 1112 A; 1086 C; 1229 G; 962 T; 0 other; ggttatgagc ccaaagacgc tggggccgaa tgacatcctt caggaggata actacttcct 60 atgggagttt aatgcacgca tgacgttggc acacaaggac ttactcgacc atgtactggt 120 agcaaagcca gagcaggcga tggcgcggga aaccgacccg ccgatttaaa ggctttggct 180 gttcttagca agttgctaag tccccactac cagacgatga tacgcgaggc tacctcggcg 240 ttggaagcgt gggagacgct gcgggatttc tttgtccgac agaatctcca aaaccgagtc 300 cagcttcgca gacagctcca cgacttccgt atgtccacaa ggggacaatc tcatggagca 360 cctgttgagg tttgatgatc tttgtttgcg tctcagcgct gctggagaca agatcgacga 420 agacgaaaag ttagttgtgc tactcggcag tctgtccgct gagtatgaca gcatggtgaa 480 gattattgag tccaagggtt cgatttcact cttagaggct aaggagatgc tacgccgcga 540 atatgagtcg ctgcagcgac gcgagaagca agaaagtgcc tttcgagctg gtaccagcgg 600 tacgaagggc cagcagagat aacgacgtga cgaccgcaga gcgagtggcg gtcgtgggag 660 ccaagatcga cagaacagcc ggcacggagg ccggaactcg cagtctggaa cgaagcaacg 720 gagtgaccac ggcttcaaag gtcgatgctt cgagtgtgac gagatcggtc acaggcgcac 780 tgattgcccc aagctgaaga aatatgatga cgacaatgaa gttgtgttct ctgcgtcagc 840 cacttcatgg agaagtgagt ggcttctgaa cagtggggcc agttcgcaca tgacaaacac 900 aatggcggag ttctgcgagt acaggggctt aaacagaaat ttgaacatta cgatagcgag 960 cggacagtcg cttcccgctc aaggagtcgg tgcagtgcgt taccgtgtaa atgggcgttt 1020 gatcaagatt acggatgttt tgtatgtacc tggattagat cgcaagctat tatcaattcc 1080 agctctcgcc gcaaagaacg tggaagtatc gtttagtgca agtggatgca cgatcagatt 1140 cggcggggaa acattggctc tggtgccgaa gattggtaag ctctacgcgt ggaatgttca 1200 agtccagcat gctgctggat atgaagggac ggccacagca atgatggcaa gacctacgga 1260 cgcagccttg tggcacacgc ggctcgggca cgtggcccaa cagcgactgg acgccatttg 1320 gaaggccgtc gagggtgttc ctgctctccc ccaggacaat cgcgggcttt gtgatggatg 1380 tgcacaaggg aagatgacgg tgagtccatt tgcaagacaa agttccagcc gagtgaagac 1440 ccgagcccct cttgaggtta ttcacagcga cgtaatgggg ccaatgcaga cgcggacaaa 1500 atggagagcg cggtttgttg taacttttgt cgatgatttc tctcgatatg tgcacgtgta 1560 tctcctcaag tccaaggcgg aggtgcttaa acactttgtc cgtttcaacc aattggctga 1620 gacacagctt cagcgaaggg tcaagtgcat cccgacggat aacggagggg agtacacgtc 1680 caaacagttt acaagcttct gcttcaacca agggattgtg caccagacaa cagcacccta 1740 tagtcctcaa cagaatggac tagcggagcg aatgaatcgc accatcgtgg aaatggcgcg 1800 ctcgatgttg caccatatgc agctcgaaac ttgctggtgg ggtgaagcgg ttgtgaccgc 1860 gacatacatc atcaatcgta tccccaacag tgcgaggcca gcaagtactc catttgaaaa 1920 ttggtttggc gttaagccat ggttggacca tcttcgagtt tttggcgctc aaggttacgt 1980 gcacattgat cagtccaagc gatccaagtg ggaccgcaaa gcacatcgct gtattttcct 2040 cggctacacc gatgcctcga agacgtatcg ggtctgggat ctcgaggacg aaagacttgt 2100 ggtaacacgc acgttagtac tggacgagcg accgcctagc gagtacagaa gccatcggtg 2160 cagcactgaa gctcctaaca tggtcaacta caactgggat gaatgctctc attcgccgat 2220 ttctccacct atacctcgag atagtgatga tcccgctgat atggagattg actgtgatgg 2280 aacgcctgcg gagcctatgc aagtggacag cggggataag aatcgggcgt ggacactgag 2340 tggcccgagc caagtgagcg tgcgccctgt gctagcaacc caagatcagt cgcagtttag 2400 gggggggggg gaaatgatat gatgatgcca ccggatcaac ctctattggg taaccgctcg 2460 aatttgggct gcttggtaca gcggcagtcg aactcagctg cgagttttca tcatccgagg 2520 tctccgggca agcaacttgt agtgcggaac catccacgaa atctgactac ggaacgacag 2580 caacttctaa cgagcggctc ttcatctcaa gaagcactgc tacttcctgg accgaatggt 2640 ggaccacggc atgatgaccg agatgacagc tacctggccc ctggcctgcg tgaactggtc 2700 aacagtgacg tacaagagct accggcgctt cccccaccta ctgatcctga agacgagtcc 2760 gacgagcctg acccaaagcg tccacgactg ggaagttatg aaatcgctct cgccgctgct 2820 gaaggtgttc ctacttccta tgctgaagct attcgctcgc cggatgccga caaatggagg 2880 gaagcagttc gcgctgaaat ccgttcacat gtgagaaatc acacttggga tctcgtacgt 2940 agaccacatg gagcgaaggt gatcggatgt aaatgcgtat ttgctcttaa acgcgatgag 3000 cacggcaata tcgttcgtta caaggcgcgt ctggttgctc tgggattttt gcagacctac 3060 ggaattgact acagggagac atactctccg gttgctagtc tgaacactgt tcgtgtgttt 3120 cttgcagtgt gctgttcgaa aaactacgtg gtaaagcagt acgacatcga aacggcgttc 3180 ttgaacggag acctagaaga agaagtttac atggctgtac cgtccgggat caagaccagc 3240 gacggcatgg tgtgtcgtct acgacgcagt ttatacgggc tgaagcaagc cgcagctgtc 3300 tggtacaaga agatccgcga ggtgtttttg agaatgggat tccagcagtg cggtgctgac 3360 gtttgcctgt tcgtgaagga gagcggagaa gatggacctg ttttcattgt tctctacgtg 3420 gatgacctct taattggatg taagaacgat gaaatcgccg aagaagtcac gaagaaactg 3480 gccgagcact gcacggtcaa gacacttggc gacgcgcgat tcattctggg gattcaggtg 3540 caatatgatc gcgacaatgg aacacttctt ctcagccaag aacaatttat tcaacggatg 3600 attaccaagt tcgggcaaca cgaagcctat ccaatgcgaa acccctgcat tcctggtcaa 3660 gatttgcgtt ttgataccaa cagcagtgac aacaagtcaa acgcgccgta ccgtgagcta 3720 acaggttcgt tactttacgt ggcaaatgct acgcgccctg acatttgcgt ggcagtaaac 3780 gagctttctc gctacgtggc aaccccccaa gcactccatt ggcgcgctgc agtgcgagtc 3840 ctgcgctatc tgaaggccac accacgcttg agtatcagat actcacgaac gacatcaaaa 3900 gggtgcacca ttgcgacgta cacagatgca aactggggtg gtgatcttga gactcatcgc 3960 tccacgtctg gcgtcctcat cttgatggct ggaggaccgg tgattttcag gagcaagcga 4020 cagcagacgg tagctctatc gtccgcagaa gctgaatata tggcgctctc acttgccgtc 4080 caagaagtac tttggctgcg tcacttactg aaggagatga acttgaaggt aattggcgca 4140 acgaccatcc acattgacaa caagtcagcg atcagcatcg cgaagaacac gggctactca 4200 ccgcgagcga aacatatcga cctgcgttac cattttgtgc gcgaccacat caacaaggga 4260 gacatcgcac tggagtacgt accgtcgacc ttgcagcttg ccaactactt gacggagcca 4320 cttcctacgc cgcagttcac gcgtcttctc gaccgctccg gactgatgac tgagtaagtt 4380 gaaggggag 4389 // ID Copia-15_PSo-LTR repbase; DNA; PLN; 375 BP. XX AC AAQY01000592; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-15_PSo_; KW Copia-15_PSo-I; Copia-15_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-375 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000592; Positions 92932 93306. XX SQ Sequence 375 BP; 84 A; 82 C; 94 G; 115 T; 0 other; tgttgcgatt gtacacttcg cagtctagtt gtgtgtctcc gtatcgaggc acgtgcttgc 60 tgtgaagttg ttgccgatgg taggcaattg tggtacacgt ggtgtaatac tgggatctga 120 ttggcggagc cccaagattt gacacttctg attggctgag agaaaggcaa gttgaagttg 180 cctttctgga tacgatctgc aacatttact ttttgctccc ccgcatctcc tacgacgaag 240 taggaggtat gggttggtac gattcatgtt taagcatagg agactaggat atgatagtta 300 gtttggccta actcattcta attcactttc ggatttcctt cctaaccaac actcgactac 360 caagcctcgc ccgca 375 // ID Gypsy-8_PSo-LTR repbase; DNA; PLN; 424 BP. XX AC AAQY01000384; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-8_PSo_; KW Gypsy-8_PSo-I; Gypsy-8_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-424 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000384; Positions 1629 1206. XX SQ Sequence 424 BP; 95 A; 103 C; 138 G; 88 T; 0 other; tgtcacgggt cacgtctgag acctcaactg acagctttcc tgacgatgct cgaaggcgcg 60 ttagagcagg aagaggcgcg acttcaagag gagcaagggc aggacgggct agcatattaa 120 gtgtgagtgg ttatccctct cttcaaggca aagatgacgc gagatggcgg gctgggcgcg 180 gaacgttcgg tcgccagccg ccaaggacgg gtgtcatgga cgccaggaag ctcgtgcacg 240 ggaggtgtgg cgtccccaag tggttgcagt aggaaaggaa gcgggtcggc ggggtcgttg 300 aaagcaagaa accctttgca tttttacgag atttccttcc tttcttctag cgtcttacca 360 gcaagctatg cgtctactct ttgttggccg aagtactcga ccctaacgga ggaggaccgc 420 gaca 424 // ID Gypsy-21_PIT-I repbase; DNA; PLN; 4764 BP. XX AC AATU01000497; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-21_PIT_; KW Gypsy-21_PIT-LTR; Gypsy-21_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4764 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000497; Positions 95961 100724. XX CC 'CATAG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 236..1186 FT /product="Gypsy-21_PIT-I_1p" FT /translation="MKPVKSSIDRKLLEVVCLYELRKAVDNVSSEELLMLI FT KQRIGTVKNEQIPDLDELFKKKLKIDLAENDIDARVLRYYRDFSSIIENHG FT LGKILGVGDPDAEGFADRMKLRCTILIDNLEPRMVRDDVKRHCKYECREAK FT RNDFMLFNIIKEKARAQHKYHLLSMEHRSKSGPNRRSSHNETKTKTGSGEQ FT HTAVEARRDGTQRNSPTTNTGSQPQRKESKPPKTGCWVCQGSHWLRDCPTA FT TDDDKRRAVDKMKEIKDRSRVKVVRTLPQPGEVMINELVVLPYCADSGSDS FT TVIPRAVVDELVALGSGVEMHVIYN" FT CDS 1173..4547 FT /product="Gypsy-21_PIT-I_2p" FT /translation="MSSTIEAIVAGGSTVTCFDSVTVDVVLQTTAGTVKLP FT DVTCLVMEGEETDFLLGNDTLVSLGIDVNQQLEQLAGGSLSEDVDPFEDDG FT CADLELSGLEVRSKLEDMMVAAGNNGFDADYLSFLHDTVLEYEDIFRIDLG FT AGPPADIEPLQIQLVDGAVPFRARSRRYAKAQRIFLRDYTKRLELMGFIRQ FT NNQSHWACAAVPVAKPKSPGNFRMTVDYRPVNALTVPIAGAAQDVTDSADE FT AAGAYGFADFDMPKGFWQLPLHPDSQEMMSFVTTDTVWTPTRVPQGASDSA FT THFQNEMQKVFAGMLYAYLLVWIDDILVYADDAPTFIATLREFFSIVRTHR FT LKLSVSKSCLFQKEIRWCGRIFSGTGIRHDPERISALQALPLPTTAADLQQ FT FLCAAGWMRDTLLDFGRTMRPLHDKLEAVLSVNGRTKKLAAGVFLSWTLDE FT KNVFNSAKTLLGSSQLLHFPTTSSTVAVFSDASELGWGLVVTQVDDWDSAL FT PANEQQHQLLVCKSGIFDETERRWSIIEKEAYPIIWAARNLGHLLVRPLGF FT RLFCDHKNLIYVFAPTHEVKRHVRGKLQRWALSLTGLHYQIDHIDDTANVW FT ADLLSRWGSCGEAGVHVKCKFVTRSQQRIDDATERQLDELRPRQGDFVFPT FT LNEISQVQQQHKRNAPRATVCDHNGIMTVDGKIWIPESVKELRQRILIVAH FT CGSQGHCGLDAMMTTVKDLFSIKGLRQHCRRYLKRCLLCKHVKGGNVIPRP FT WGPTYDASERNEMLHWDFLFLGDSVDECKYLLVMKDGLTHFCELVACDSPT FT SVVAAISLMKRFGPPKNLISDQGSHFKNQVVQQLCKQLSIEQDLVLAYAPW FT INGTIERLNRDVLQVLRVLLMEMKLDTHEWEYLVPVVQGILNHTPVASLGN FT RSPGELFTALPRPTPFETIVVERNGKAMMVTEPVTIPDEMVENMQRSLQEM FT HKEVVDIRERRRNGVPCNFTIGDFVLWSRIDSRLSVNILLARWVGPFEVVE FT EHPHSYMIRHLVSSQRYMVHGSRLKFYRDGSLGTSEELLAHVGNQGMVLGV FT KDFKDHRKTQHGWQLLVSWVGLQNEEDSWESLQSLYSNIPTRVENYAAQSG FT DNEFVQALSTFQQNTRA" XX SQ Sequence 4764 BP; 1184 A; 1124 C; 1277 G; 1179 T; 0 other; aagtatactt tagtcctaag ggaccgcaag catggcaacc aagtcacatc agtacgaagc 60 tgatggtgac acagtgatga agtctgtaaa tcaaccggta ttcgagttcg tcaaggcgcc 120 gtggttgaac gactggagtc atgatgcatt ggtcaaatga aactaagcac gtgaccagta 180 cgaggaaact attcggcaac gctgttttga gagtcgtgaa cgacccgaga ccgtgatgaa 240 accagtaaaa tcctcaatcg accggaagtt gctggaggtg gtatgcctct acgagttacg 300 gaaggctgtg gataacgtca gcagtgagga gctcctcatg ctgattaagc agcgcattgg 360 tactgtaaag aacgagcaga tccccgactt ggacgagttg ttcaagaaga agctgaagat 420 cgacttggca gaaaatgata tcgatgctcg tgtactacgc tactaccgtg atttctcctc 480 cattattgag aaccatggtt taggaaaaat actgggtgtc ggagacccag atgcagaggg 540 ttttgctgat cgtatgaagt tacgatgcac catcttgatc gacaaccttg agcctcgtat 600 ggtacgtgat gatgtcaagc gacattgcaa gtatgagtgc agagaggcga agagaaacga 660 tttcatgctc tttaacatca ttaaagagaa ggcacgggct cagcacaagt atcacttact 720 gtcgatggag cacaggtcca aatctggacc taaccgaagg tctagccata atgaaacgaa 780 gactaaaacc ggtagtggag aacagcatac tgctgtggaa gcccgtagag acggcactca 840 gcggaattca ccaacgacta atactgggtc tcaaccccag agaaaggagt caaagccacc 900 caagactggc tgctgggtct gtcaaggctc gcattggctt cgagactgtc cgacagcgac 960 ggatgacgac aagagacgtg ctgtcgacaa gatgaaggaa ataaaggacc ggtcacgagt 1020 taaggtggtt cggactttgc ctcaaccagg ggaagtgatg atcaacgagc tcgtggtctt 1080 gccgtattgt gctgactcag gatctgactc aactgttatc cctcgtgcag tggtcgacga 1140 gttagttgca cttggtagcg gtgtggagat gcatgtcatc tacaattgag gctatcgttg 1200 ctggaggttc tacagttacc tgttttgact ctgttacggt ggatgtcgtg ctgcaaacga 1260 cagcgggtac tgttaagcta cctgacgtga cctgtttggt tatggagggt gaagagaccg 1320 attttcttct tggtaacgac acgctcgtct ccctcggaat tgatgtaaac cagcaacttg 1380 aacagctggc tgggggttca cttagtgaag atgtggaccc atttgaagac gatggatgtg 1440 cagatctcga gctttctggt ttggaagttc gcagtaaatt ggaagatatg atggtcgccg 1500 ctgggaataa tggttttgac gctgactatc tctcttttct tcacgatacc gtgctggagt 1560 atgaggatat ttttcggatt gacctgggtg ctggtccccc tgccgacatt gaaccactgc 1620 aaattcagtt ggtggacgga gctgtacctt ttagagcgcg ttcacggcgc tatgccaaag 1680 cccaacgcat tttccttcgg gactacacga agcggctcga gctgatgggc tttattcgac 1740 aaaataacca aagtcattgg gcatgtgcag ctgtgcctgt ggcaaaaccc aagtcaccag 1800 gtaatttccg gatgacagtc gactatcgcc ctgtaaatgc actgaccgta ccgatcgctg 1860 gagcagccca ggatgtgacg gattctgccg acgaagcggc cggagcttac ggtttcgcgg 1920 atttcgacat gccaaaagga ttctggcagc ttcctctaca tcctgacagc caggaaatga 1980 tgagttttgt tacgaccgat actgtatgga cacctacgcg cgttccacag ggagcgagtg 2040 attcggcaac gcattttcag aacgagatgc aaaaggtttt tgccgggatg ctgtacgcct 2100 acctacttgt atggattgac gatattctcg tctatgcgga cgatgcgcct acgtttatcg 2160 ctacacttcg tgaattcttt tctattgtcc gcactcaccg gctgaaactc agcgtgagta 2220 agagttgttt gtttcagaag gagatccgtt ggtgtggccg catctttagt ggcactggca 2280 ttcgccatga ccctgaacgc atcagtgcgt tgcaagccct tcctctccct actacagccg 2340 ctgacctcca acaatttttg tgtgctgctg ggtggatgcg cgatacgttg ctcgactttg 2400 gccgcaccat gcgcccgttg catgacaagt tggaggcggt tttgagtgtt aatgggcgaa 2460 ctaagaaact agcagccggg gtgtttcttt cgtggacttt ggacgaaaaa aacgtgttca 2520 actccgcaaa aaccctgctt ggatcctcgc aactgttgca ttttccgacg acgtcgtcca 2580 cagtggccgt gtttagtgac gccagtgaac tggggtgggg gctcgtcgtg actcaagtgg 2640 atgactggga ctctgcatta cctgctaacg agcagcagca ccaacttcta gtatgcaaaa 2700 gcggaatttt cgacgagacg gaacgtcggt ggagcatcat tgagaaggaa gcgtacccga 2760 tcatttgggc tgcccgcaac ctgggccatc ttctcgtccg ccctttaggc ttcaggctgt 2820 tctgcgacca caagaacctg atctacgttt tcgcaccaac acacgaagtt aaacgtcacg 2880 tgcgtggcaa attacaacgg tgggcgttat ctctcactgg tcttcactac caaatcgacc 2940 acatcgatga tacggcgaac gtgtgggccg atctactctc gcggtggggc tcttgtggtg 3000 aggcaggggt gcacgtgaag tgcaaattcg tcacgcgtag ccagcaacgc attgacgacg 3060 cgactgaacg ccaacttgac gagctgcgtc cgcgtcaagg cgactttgtc tttccgacct 3120 tgaatgagat cagccaagtg caacagcaac acaagcggaa tgcacccaga gcaacggtgt 3180 gcgatcacaa tggcatcatg actgtcgacg gaaaaatatg gataccagag tccgtgaagg 3240 agctacgaca gcgcattctc attgtggctc attgcggtag tcaaggacat tgtggacttg 3300 acgcgatgat gactacagtc aaagaccttt tctcgatcaa aggcctgaga caacattgcc 3360 ggcgatatct gaaacgatgc cttctctgca aacatgtgaa aggtggtaat gtgattcctc 3420 gcccctgggg gcctacatac gacgcatctg agcgaaacga gatgctccac tgggattttc 3480 tttttcttgg tgacagtgtg gatgaatgca agtacctact cgtaatgaag gacggcctta 3540 ctcatttttg tgaattggtg gcttgcgatt cgccaacaag tgtcgtggca gccatttcac 3600 tcatgaagcg ttttggtccg cctaaaaatt tgatttccga tcaaggaagc catttcaaga 3660 accaggttgt acagcaactt tgcaaacagc tctccattga acaggatcta gttctagcct 3720 acgctccgtg gatcaacggt actatcgagc gactgaatcg agatgtgctg caagttctac 3780 gtgttctcct gatggagatg aagctggaca cgcatgagtg ggaatatctc gttccggtag 3840 tgcaagggat tctgaatcac actccagtgg cttcattagg caaccggtcc cctggtgagc 3900 ttttcaccgc gttacctaga cctacaccat ttgagactat cgtagttgag cgcaacggca 3960 aggccatgat ggtgactgag ccggtgacta ttcctgacga aatggtggag aacatgcaac 4020 gaagtctaca agaaatgcac aaggaggtgg tggacattcg ggagcgacgt cgtaatggag 4080 taccatgcaa tttcactatc ggtgattttg tactgtggtc aaggatcgac tctcgccttt 4140 cggtaaacat actactcgct cgctgggtgg gaccattcga agttgtcgag gagcaccctc 4200 attcctatat gattcgccac ttggtgagta gccaacgcta catggtgcat ggatcccggc 4260 tcaagttcta ccgtgacgga agcctgggca ccagcgagga actcctggcc catgtcggca 4320 accaaggtat ggtccttggc gtcaaagatt ttaaggatca ccgcaagacc caacatggat 4380 ggcagcttct cgtgtcctgg gtcggtttgc agaacgaaga agactcctgg gaatctcttc 4440 agagtctcta cagtaatata cctacgcgtg tggagaatta cgcagctcaa agtggcgaca 4500 acgagtttgt acaggccctg tcgacctttc agcaaaatac cagagcctaa ttcgacgtgt 4560 aggtcaagtt atggagcaac ttcaacgtgt tgcagtgcga cttgacctgt aacactgtcc 4620 cgtctcatgt atggactgtt ttttcgcaac cggtgacaga tttccatcag tcgtgacatt 4680 tggtgacata tgtctctctg acttggattt cctatacttg gagaattttc aatacaagag 4740 gctcaacggg ttcttcgggg gcag 4764 // ID Gypsy-13_PPa-LTR repbase; DNA; PLN; 532 BP. XX AC . XX DT 15-DEC-2009 (Rel. 15.07, Created) DT 15-DEC-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-13_PPa-I; KW Gypsy-13_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-532 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 976-976 (2010). XX DR [1] (Consensus) XX SQ Sequence 532 BP; 131 A; 75 C; 128 G; 197 T; 1 other; tgtaacaggg tatagataag atatttgtat tattgacaca tagggataga tagttggaac 60 catgtttgag aagttatgga agtttctaga attggggcta ggttagtgga ctatgtagga 120 tccatcatgg aacattctag aaagagctta ggacagttat ttaggtaggg cctaccatag 180 aaccttctaa aaggagttta aggtggttat ctaagtggga tccatcatct aagaacattc 240 tagaaagtct aaggtggtag aacaaagtat aaataggact ggccagggcc ttttggggca 300 tctggtcagg tatggcttta gaccttctct cttagtaaag tttggttttg catcttcttg 360 ttcagttctg ttttgtttta tttctgtttg cwcagttttg tctttcgtgt cctattctgt 420 ttagttctgt tcaattttgt tctggtccat tttgtcctac tttgtgatga ggttttatgt 480 tgctgtggat tagaagggtc ttagactctc aagatagact ggtcctattt ca 532 // ID Sm1 repbase; DNA; PLN; 5466 BP. XX AC . XX DT 29-APR-2007 (Rel. 12.04, Created) DT 29-APR-2007 (Rel. 12.04, Last updated, Version 1) XX DE Sm1 is a Penelope-like retroelement. XX KW Penelope; Non-LTR Retrotransposon; Transposable Element; KW Penelope-like elements; reverse transcriptase; Sm1. XX OS Selaginella moellendorffii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; OC Selaginella. XX RN [1] RP 1-5466 RA Arkhipova I.R.; RT "Distribution and phylogeny of Penelope-like elements in RT eukaryotes."; RL Syst. Biol 55(6), 875-885 (2006). XX RN [2] RP 1-5466 RA Gladyshev E.A. and Arkhipova I.R.; RT "Telomere-associated endonuclease-deficient Penelope-like RT retroelements in diverse eukaryotes."; RL Proc Natl Acad Sci U S A 104(22), 9352-9357 (2007)in press. XX DR [2] (Consensus) XX CC Sm1 is a Penelope-like retroelement from the spike moss, CC Selaginella moellendorffii. Its ORF2 contains homology to reverse CC transcriptases. No associated endonuclease has been found. Most CC copies are associated with telomeres and are 5' truncated by CC addition of reverse-complement S.moellendorffii telomeric CC repeats, (TAAACCC)n. XX FH Key Location/Qualifiers FT CDS 373..3192 FT /product="Sm1_1p" FT /note="ORF1." FT /translation="MPATPPPPLPSAALVPIPDSHDVMDPSPLMPPGPAAP FT GSSNHAMATAETGYAPVPPAPVLQFELGTTSRATSSREHSQLLAEAIYDER FT ASHRPLSPYLKRVLDTRRALRLRTTHVITAHIETRLENLEQDDTLSSVANF FT FCNEALRSALQRPPTSSDTATPQNSSDSVARSPDMSRLQQSMRHGPHSAAQ FT ERCMANTAASPAVNCDSPTSEQEVSQAEGTEHVVHVEHATEHVAHVEHAAV FT QPMRRFPMPDLPRALRAPRHQRDLRSFYVENFPHRYVRSQFQDAFESLLRD FT RGAYPHGVLPANPGPLTAEPSATAMRRIFPPPVVPNPVSSPPRPAPAMAAE FT QRPPSERGLPGPGPLRQPLRQPPSPATHGSVSRPVQPRPTTSHRQEQPVST FT PPRPTPSPRTRRTPPHTSMPERPSTPRSPEAGPPPLTPRASPAQRAPSTRT FT TRTQASPRAASQELRRPPPAPVDPPVAPPPRDHPAAQGTRTDAEAIPPQPE FT RCSGQPAPGRTPEPPAAPPPPLATGAEDGYTLGGFKNIDGAFNSILASSLR FT EFLQEYNTLVSSRSALQGLKDLKEQKKRPQSLRTRPPKLKVSRHAQDGLTS FT RIAEAHERYLTELHDILIKAREDEIETLQRLVSSGLRDLFRSRLEDLVTST FT LSYCSATEHDAVYHHLLALKQRCTLKFHTETSFFMAGKGIEHRAQTTATRR FT LEEAIDAANASADALPKEQTMAELVNAAVTKALQSQRHATPSNAGKKKRKR FT EKKNKAREQRDGTPGKHAQESSKRHRVSFAANADEAGSRSATPARNDQGNG FT QRRNGATGTPPTRSAASASSSRGTPRRTSPARPGSREKNAGRDGPHRSGRS FT SSPQGRPRSTTPAPVTSGPQRPRGRSPTRGSKGARTRSPRPRPGRSQTPAS FT RRSRTPAPRRRSRSRSRSPTAKVPVRGILKTTGHH*" FT CDS 2766..5036 FT /product="Sm1_2p" FT /note="ORF2; reverse transcriptase." FT /translation="PGKRTAAERGYWDSSHPFRCIGFFFEGDSAPDISSPA FT WFPRKECWTRWPSPFWPQQLPTGAPTLHDTGTGHLRSPATSRTFTDQRQQG FT SSHTQPSTSPWTEPDPCQPQEQDPSTTTPLSLALTFANRQSPREGNPQDYW FT SPLTSPSKAILDIAGQRPVSKFENRVETGAVHNLSSRALSAAEIRLLSLGL FT RYIPNPAPLRAPQIVESSDALCRAVRLRHLFKDDDSALPEFRVPNPSFEPP FT PAPAYVERRLAHVRGSLLHRLEGAHKPRSFAHGWKKRALHSLATDTSIVIK FT PADKNLGAVVLDRDWYTKEALRQLNDPLVYVKVPSVPSKSLQERLAELITK FT YRSCSWLDNSTQQFLLHQPAVPRQACMMYFLPKIHKQPIKGRPIASYIGTL FT WEPLARWLHRQLYDILLKQPTFLSDSRTLLQDLLHLQLPRDCWLFTFDVES FT LYPSIPTREGLQRLRDFVFAEYGNTTRSRFLMAAAALVLEHNYVEFDGNIY FT QQIRGTAMGSNFAVVYACLFLCSLEAEYKHATNDWPFYLRRYIDDGVGIWT FT GTRAGLERWLRGYGTLCPSIKITSVISLEELDILDIHFFKGPRFEETGCLD FT SSTFQKPLNAYQYLPWTSVHPRHQKVAFIRSELRRYLLRESTADGFHAMRT FT RFYHRLRARGYPTSFLHHCFSGISYDQRHQALLARSRRSSDACRRAPLAFK FT LPYTLHSAQLGLGDILNPKQVMDEAPTDTLPRVITCWRRSPNLGSFLVRAK FT LPPRA*" XX SQ Sequence 5466 BP; 1172 A; 2001 C; 1377 G; 916 T; 0 other; tggctgctcg gctcggccta gcagcgccaa gcagcatcac aggctgctgt gcgctgctgc 60 accatcccgc gccgcccagt accgcctggt accgcctggc atcgccctgc gacgcgcgac 120 gccgcccata ccacgcagta ccgcccgtac cgcccggcac cgcccagcga cgcgctacac 180 cgcccggcat cacccagcga cgcgcggtac cgcccagcga cgcgcggtac tgcccgtacc 240 gcccggtacc gcccagcgac gcgcggtacc acccgtaccg cccggtaccg ccccgcgccg 300 cccagcgccg cgcagcgtct ctagcaccgc ggctgccccc agcactacgg ctgccaccag 360 tgacgcccag tgatgccagc gacgccgccg ccacctttac catctgctgc tctagtgcct 420 attccagaca gtcacgacgt catggacccc tcaccgctca tgccaccagg gccagcagca 480 ccagggagct ccaaccacgc catggctact gcagagacag gttacgctcc agttcctcca 540 gctccagtgc tccaatttga gctgggaacc acgtcacgag ctacctcgtc gcgtgaacac 600 tcccagctcc tcgctgaggc catctacgac gaacgtgcgt cgcaccgacc actctcgccg 660 tacctcaagc gagttctgga cactagacgt gcgctgcggc tccgcaccac gcatgtcatc 720 acggctcaca ttgagacgcg tctggagaac ctagagcaag acgacactct ttcgagtgtt 780 gccaactttt tctgcaatga ggcactacgt tcggcattgc agcgacctcc cacctcctct 840 gacacggcca caccacagaa ctcctcggac tctgtggcgc gcagccctga catgagcagg 900 ctgcagcaga gtatgagaca cggtccacac tctgctgcac aggagcgctg catggcaaac 960 acggcagcgt cgcccgcggt aaattgcgac agcccgacat cggagcagga ggtttcccag 1020 gctgagggca ctgagcacgt ggtgcatgtg gaacacgcta ctgagcacgt ggcgcatgtg 1080 gaacacgctg ctgtccagcc aatgcgccgg ttccccatgc cggatctgcc acgtgcactt 1140 cgagccccac gccatcagag agacctccgc tctttttacg tggaaaactt tccacatcgc 1200 tacgtcaggt ctcaattcca ggatgcgttt gagtccctcc tacgggaccg tggagcctac 1260 ccgcatgggg tcctccctgc caaccctggc cccttgactg cagagccgag tgctacagcg 1320 atgcgacgga tcttcccacc acccgtggtg ccgaatcccg tttcatcacc gcccaggcct 1380 gcccctgcca tggcagcaga gcagcgaccc ccatcggaga gaggccttcc aggacctggc 1440 ccactgcgac agcccttgcg acagcctccg tcacccgcga cgcatggctc tgtctcacga 1500 cctgtccagc ccaggcccac cacgtcccac cgacaggagc agccagtgtc tacgcctccg 1560 cgcccgacac cttcgccgcg gactcgacga acacctcctc acacctcgat gccagaacgg 1620 ccgtccacac ctcgctctcc ggaggctgga ccgccgcccc tgacaccacg ggcctcacca 1680 gcacagcggg caccctcgac acgcacgaca cggacgcagg catctccgcg tgcagcatca 1740 caggagctgc gacgtcctcc ccctgctcca gtggaccctc cggttgctcc gccaccgcga 1800 gaccacccag cagcacaggg gacacgcaca gatgctgagg ccatccctcc ccagccagag 1860 cgatgctcag gccagccagc tccgggacga acgcccgagc caccggctgc gccacctccg 1920 ccactggcca ctggagcaga agatggctac acacttggag gcttcaagaa catcgatgga 1980 gccttcaaca gcatccttgc gagctccctg cgagaatttc tgcaggagta caacactctg 2040 gtgtcgtcga gatcagctct ccagggcctc aaggacctga aagagcagaa gaaacgcccg 2100 cagtcgctcc gcacacgccc accgaagctc aaggtgtctc gacatgccca ggacggcctc 2160 acgagcagaa ttgctgaggc gcacgagcgc tacctcacgg agctgcacga cattctcatt 2220 aaggctcgcg aggacgagat cgagacactc cagaggctcg tctcctcggg tctcagggat 2280 ctctttcgca gccgactcga ggatcttgtc acctccacac tcagctactg cagcgccacg 2340 gagcacgatg ccgtctacca ccacctgctc gccctcaaac aacggtgtac cctcaagttc 2400 cacactgaga catcgttctt tatggccggc aagggaatcg agcaccgagc gcagacgaca 2460 gcgacgcggc gattggagga agccatcgat gcggcgaacg cctctgcgga tgccctcccc 2520 aaagagcaga ccatggcaga gcttgtgaac gccgctgtta cgaaggccct ccaaagccag 2580 cgacatgcca cgccgtcgaa tgcaggaaaa aagaagagaa agcgagaaaa gaagaacaaa 2640 gcgcgagagc aacgtgacgg cacaccgggt aagcatgcgc aggaatcgag caagaggcac 2700 cgcgtctcct tcgccgccaa cgccgacgaa gctggatccc ggtcggcaac acccgcccgc 2760 aatgaccagg gaaacggaca gcggcggaac ggggctactg ggactcctcc cacccgttcc 2820 gctgcatcgg cttcttcttc gagggggact ccgcgccgga catctccagc ccggcctggt 2880 tcccgcgaaa agaatgctgg acgcgatggc cctcaccgtt ctggccgcag cagctcccca 2940 caggggcgcc cacgctccac gacaccggca ccggtcacct caggtcccca gcgacctcga 3000 ggacgttcac cgaccagagg cagcaaggga gctcgcacac gcagccctcg acctcgccct 3060 ggacggagcc agacccctgc cagccgcagg agcaggaccc cagcaccacg acgccgctct 3120 cgctcgcgct cacgttcgcc aaccgccaaa gtccccgtga ggggaatcct caagactact 3180 ggtcaccact gaccagtccg tctaaggcta tcctcgacat tgcgggacaa cggccagtct 3240 cgaagttcga gaaccgagtg gagactggag ccgtacacaa cctctcaagc agggctctct 3300 cggccgctga gatccgtctc ctctccctcg gcctgcggta catcccgaac ccggcaccgc 3360 tcagagcccc acagatcgtg gaaagctctg atgctctctg ccgagccgtc cgactccgtc 3420 acctcttcaa ggacgacgac tcagccctgc cggagttccg agtaccgaac ccgagcttcg 3480 agccgcctcc agcaccagcg tatgtggaac gacgccttgc acacgtgcga ggcagcctgc 3540 tccacaggct ggaaggagca cacaagcctc gctccttcgc tcacggttgg aaaaagcgtg 3600 ctctccactc tctcgcaacg gacacatcca tcgtcatcaa gcctgcggac aaaaatcttg 3660 gagcggtggt gctggatcgt gattggtaca cgaaggaggc tctccgccaa ctgaacgacc 3720 cactcgttta tgtgaaggtc ccctccgtgc catccaaatc cctccaggaa cgcctcgccg 3780 agctcatcac aaagtaccgc agctgctcgt ggctcgacaa ctccacgcag cagttcctgc 3840 tgcaccagcc cgccgtaccc cggcaggctt gcatgatgta ttttcttccg aaaatacaca 3900 agcagccaat aaagggccga cccatcgcaa gctatatcgg tacgttgtgg gagcccctcg 3960 cgcgttggct tcaccgccag ctctacgata tcctgctgaa gcagccaacg tttctttccg 4020 actcgcgcac gctgctacag gacctcctcc acctacagct cccgcgggac tgctggctct 4080 tcacgttcga cgtagagagc ctctacccaa gcatccccac acgagaaggt ctccaacgcc 4140 tccgcgactt tgtgtttgcc gagtacggca acaccacacg ctcgcggttc ctcatggctg 4200 cggctgccct cgttctggag cacaactacg tggagtttga cggtaacatc taccagcaga 4260 tccgcggcac agcaatgggc tccaacttcg cggtggtcta cgcttgcctc ttcctctgct 4320 ctctcgaagc cgagtacaag catgccacca acgactggcc cttctatcta cgaaggtaca 4380 tagatgacgg agtgggcatt tggacaggta cacgagcagg cctcgaacga tggctccgag 4440 gatacggcac gctgtgtcct tcgatcaaga tcacctcggt gatctcgctc gaagagttgg 4500 atatcctcga tatccacttc ttcaaaggcc ctcgctttga agagacaggc tgcctcgact 4560 cgtccacgtt ccagaagccg ctcaacgcct accagtacct cccctggacg tcggttcacc 4620 cacggcacca aaaagtggca ttcatccgca gcgagctccg gagatacctc ctccgcgaga 4680 gcacggccga tggattccac gccatgcgca cgcggttcta ccaccgcctc cgtgcccgag 4740 gatacccgac ctccttcctc caccactgct tctccggcat ctcctacgac cagcgacatc 4800 aagctctcct tgcacgttcg cgccgctcta gcgacgcctg tcgacgggcc cccctcgcct 4860 tcaagctgcc ctacacactc cacagtgcgc agctaggctt gggggacatc ctaaacccta 4920 aacaggtgat ggatgaagct cccacagaca cactccctcg agtgatcacg tgctggagac 4980 gctccccgaa cctcggttcg tttctggtca gggctaagct ccctccgcga gcttagccac 5040 gtcttgtacc gcactttgca agacacggaa gcttatgttt gcaccctaaa ccctaaaccc 5100 taaaccggta gacactagac gactacaccc ggctgatgag tcccaaaaag gacgaaaccg 5160 gtctcgggtt gtctcttgtc ttctccctcg ctcacgaatg aatgaaaatt cattccctcg 5220 cctcctctac ttgctctcga tcacgccgtc tcaacaacgg cacacggaga atgtggattg 5280 cacaaagtgg tgccgcgatc tcgccggatt gcagcaccgc gaggtgtctt tgaccctaaa 5340 cgcctaaacg cgcctaaacc ctaaacccta aaccctaaac cctaaaccct aaaccctaaa 5400 ccctaaaccc taaaccctaa accctaaacc ctaaacccta aaccctaaac cctaaaccct 5460 aaaccc 5466 // ID PiggyBac-1_EmiHux repbase; DNA; PLN; 3247 BP. XX AC . XX DT 17-MAY-2011 (Rel. 16.05, Created) DT 17-MAY-2011 (Rel. 16.05, Last updated, Version 1) XX DE DNA transposon: consensus. XX KW piggyBac; DNA transposon; Transposable Element; KW PiggyBac-1_EmiHux. XX OS Emiliania huxleyi OC Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; OC Emiliania. XX RN [1] RP 1-3053 RA Yuan Y.W. and Wessler S.R.; RT "The catalytic domain of all eukaryotic cut-and-paste transposase RT superfamilies."; RL Proc Natl Acad Sci U S A 108(19), 7884-7889 (2011). XX DR [1] (Consensus) XX SQ Sequence 3247 BP; 648 A; 993 C; 1076 G; 530 T; 0 other; cccctaaacg gctgtggttc ccatatggga acttcgccca attctgtgaa agagaaaacc 60 ggtcggctaa ggagcgaagt cggccgatcc ggcgacccgc tttcgcttgg cagacggccc 120 gggtgctgtg ccgcctacca ccagccgctt gactccggag tcgcatctcg gagagagaat 180 ctaagattcc ttcagattcc ctagattccc gcagcaccct tcggtagcga atgaagcgca 240 aggcaaaaca acgacctgcg cccgatcctc gctctgggct tgttgggagg taccttggcg 300 tgccgtgcag cttcttcaac gtaaacgtcg agggtgctcg ctacttggcg cgagtcaaga 360 gcttgcacaa gtctcaaaag tccatgctct ggatcaagtt caaccagggc ggctacggcg 420 aggacgcctt cgcgcctctg gcagtggtga agcagtggct catatccgac gacgaggcgc 480 tcgatcccaa gtcagactgg tacgaggacc cagacgagag cgacgacgac tcggacgtgg 540 aggatgggga cgaggcggag ggtggtgcaa acgcgaggcg agcgccagcc gcacgccggc 600 gtgtcgatga gcctcgcggc tcggtcaaag gcagccgatg gcagccggcg gaggcgcgga 660 aaacgcccca cgccgtcgac aacatcgtct ggagaaaggc caccggcgcc gtcccaagcc 720 acaagccaaa ggtcttcgcg cggaagctgc cacccggtgt gtcggagggg ctgcagcagc 780 cgctgcctaa ccacggaccg atcaatgtcg agctgttcaa ccggcagtgg gacattcgat 840 gctgggagct cgtctcgaaa tacagcaaac agcgcgtccg cgacctgaag attggaaccg 900 tggacgccgt ctcgcgcaag ccgaagatga agaatcgcgc cgacggcagc aaggggaagc 960 agcgcaaggc accttctatg tcggtgccct tcctgatccg actgcacgtc atcatcacgg 1020 cgatgtccat ttgccgcctg cccgcccgca agtactactg gcgcaagggc aagttcgtcg 1080 gctgccccgg catctctgtc atcatgtcgg agaacgactt tgcgcagggc atccgctgcc 1140 tctacgactg cgatccatcg aagctggttc cccgtggcga catgacgcag ccgccgcctg 1200 tgggctacga caagatggcg aagacgtccg agctgaacga gctcgtgatg gagaacacgc 1260 tcaacgcggt gtgcccgaag aagacgctgt cggacgatga ggcgtcggcc gagtggcggg 1320 gcaagaacgg cgagggcgtc gtggtctcct tcaacaagga caagccagcc aagtgggcgc 1380 agcgcaacca gtgcttcaac ggcctcgacg gctcgcgtgt ggtgtggcac gtcctcaact 1440 gccctcggcg tgtggcggcg gagcacggcg agacgtataa gtcgacgctt ggcctcgccg 1500 cgaagctgca cgcaaagtac ggcgagggct tcgtgattgg ccaggactcg ctgtacaact 1560 cgccggtggt ggtcgtcgac ggggcgaaga agttcaaatt caacttcttc ggcaccgccg 1620 ggtggaaccg ccgcggcatg gtcgaggacg ccgacgagcc ggcggacacg cgcgggtcgt 1680 gcgtctccta ctacgcgacg gttgacggca tcccgctcac ggcgacgtac atgcgcgaca 1740 acaagatcgt ccggttcttg tcgtcggcgc acggcgtgcc caccgcggtc aacggcagca 1800 agaaaccgcg ctggaataag tccgaacgca agtacgagga ggtttacatg ccgcctgtca 1860 agtccaacta cgatgcgggc aaggtgggca ccgacctgtt cggccagtac atggagctgc 1920 tggacactac gttcaagtct tttcacccgt ggatggtcca ccacctttgg ctgtggttcg 1980 gatgttttgt caacgtgcat tgctggcgaa acaggttcat cgatgagggc gtccgtaggc 2040 tcgcaggtgc gaaaaagacg acgctcatcg aagacacgtt gcagacgatg gaggagctgc 2100 ttcagatggc ggaccggcta gagcgggagg gggccgctcg ctcaaagaag cggaagagca 2160 ggcccgaccc gcaggcgccg gtgcgcaagt cgccacggcg tgatccggtc gtcagccgct 2220 tgggttcacc gacccgccac gtgcccgtca cgttcactga gaagggcagg tgcaggtggt 2280 gccgcaagct gatctactcc gggtgcggcc accctggctg cggccacatg cacgaaggca 2340 cgtgctggat gaaggcccac tcgaacgacc cgaagatccg tgcgaagctg aaggcgctgt 2400 ccttccagcc agagatcgcc gatggcacac aggcgcgacg cgccccgcga tagagagacc 2460 gtcacaatcc cgctctgcgc cttcggtggc aggcggtggc aagggaatgg ggagacgata 2520 cgccgtccaa tccggcagag agttgtcttt cggcagcacg gggggtgaga gcgtttggcg 2580 tggtcgatgg tgcaccgccg tcacggtcac acgcacacac acgcgcgcgc cgcgcgcgcg 2640 cacaccacac acacacacac ccatcctgat cgcgccgtgc gcttgggggg ccctcaggtg 2700 tgcatccgca aggtgaagcg gacgcgcaag cccaagcgga agttgcgcta caacgaggag 2760 gagggcggcg ccggggccga cgccgacgcc gaggaggagg acgacgacgg tgatggcgac 2820 gatgacgctc cggctccgcc cgccaagcgc cgcagcaccc gcgcgcagca gcagcgccag 2880 ggcgcgcggt gagacctctc gccgacgctt gaaccggctt tgctgcactc tgcgacgctg 2940 cggtacgtgt gtacctgtct agtagtgacc ggtggagtga gcggcgggcg tgatgtcacc 3000 ggttgagtgc cagtgtgcgt gcagaatcgg cgatcgctgc ccccgtctgg cctgtcctgg 3060 cggcgacgga cgtgtttgag ggagatttcg aggtgacgtc tttgccgtcc ctagcctcca 3120 agtgtcacta agtaatgtgc aacaccctcc ctacgcatgc tggggtgctg ggcgggcgaa 3180 tagacgcgcg agaagccctc tcaaaaatcg acccctcgga ccccgttttt agctagccgt 3240 ttagggg 3247 // ID Gypsy-23_PIT-LTR repbase; DNA; PLN; 368 BP. XX AC AATU01001903; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-23_PIT_; KW Gypsy-23_PIT-I; Gypsy-23_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-368 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001903; Positions 107196 107563. XX SQ Sequence 368 BP; 103 A; 87 C; 90 G; 88 T; 0 other; tgtgatggtg gcatgtagag tcacatcttc taatagctcc tacaacccgc agccaacaca 60 catggagtgt gctccgacgg agtatagtga agcacatcat gaactacatc atgatgctgg 120 tatgaatagc gttcagctga atcataagaa gacacatgcg gatattaaag gacacagctg 180 ctaatggact tgcacttgag tgcaaccaga gcagactctg agggcggcta tccctggact 240 gccaaggtgg caggcgagag cgcccgcaac ttaaattaga tagctcactt ttgcttttta 300 atctgatcaa cagtacaagt tggtcttcgc gggagttcca tctcccaaac ggttgttgac 360 acgtcaca 368 // ID R2I-2_PI repbase; DNA; PLN; 6828 BP. XX AC . XX DT 31-JUL-2009 (Rel. 14.07, Created) DT 04-AUG-2009 (Rel. 14.07, Last updated, Version 1) XX DE A family of NeSL non-LTR retrotransposons - consensus. XX KW NeSL; Non-LTR Retrotransposon; Transposable Element; R2I-2_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-6828 RA Kapitonov V.V. and Jurka J.; RT "NeSL non-LTR retrotransposons from the Phytophthora infestans RT genome."; RL Repbase Reports 9(7), 1525-1525 (2009). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 378..5813 FT /product="R2I-2_PI_1p" FT /note="RNase H, reverse transcriptase and FT restriction enzyme-like nuclease domains." FT /translation="MLADPAALAAGLARAPPPPSAPQDPSPAFPAGPAGQN FT PRAAAPARVEVHTVVAPPGRAGGMLPDPGLVDSSPAAATAATPAPVAATAT FT TARAAARVAVEHHAHAEPNQEHLPMARVLVEPMQVDECSSCDRSTLTADDG FT SGDDVAAPSSMLSNDVAAPMDVDSGTSCPPTLQQPLQRPRALHVGSKRRRL FT DADDGEEAHQLQEEEEAGIHAPALRLSAASAQPASVLAVYTHNASRFDCTL FT CAYTAGSFASLLTHRNSRHRRTAFLDRFSAGCACGVPFASRLAAARHAQAC FT ASLSSAPSAEASSAAGTSSPTADGADSTVSAVAHAEPGLPHHNDTELTASP FT PLVSSSDVEVQATKTEATDNRWGAPLPRVLVASRIAGRLAQVPPPRWGPPL FT PRTTIAARIATRLAATPAPRWDPPLPRSLVVSRIAARLLPALPDAPACEEE FT AKDSDTMDWAPTWTNEETKESEPHDEAPGQVDEETIDDADGEWLLRFDGAC FT RANPGPGGAGAALFKPSGPVVWTCSHYDPSTTATNNTAEYTALLLGARAAA FT DHGVTKLRIEGDSTLVIQQVRGIFATRSTRLRALRNKVKLELARVGSFSLH FT HIDRQANGHADRLANAGLDRRRTKLECSVHPDGRGCTNTSVATAAPTAPAA FT PLPSARPPASTAAPSPDDDHSDQGDIDDGEVYAAMCISPDAVPHRRPRLRL FT RRLTDEESEEAGNVVERLAASLAAKIADAPDWETAEGYITALPYALYDKLQ FT PYSQSQHQPPRQQQQQQRQRPRQQQQTRQRRQRRCKRGGGSQHRQRKTRRR FT RPPRVTRHHREHRIDEALDDLHALESRRPQDRTAISKARRRVGRIRSALDQ FT HQLRHRFDTDEKACVDGILAAARDKDRAASVTTTAQTAAPPHSAPASAPSS FT AVDDGICPIPGDLLHAFFTDVNTPRTEFDADSPIGARFREALAQLPAAIAA FT TELLMEPPSPDEVEDQLQRVRGTSSPGLDGVGYDVYKTFTQQLLPALHAAF FT SRCWTDQRVPQSWKLGVVRLLFKKGDRQDPANWRPICLQQAVYKLYAGILA FT HRFTRWLDANTRHADAQKGFRAVNGCGEHNFLAATLTDNARRRRRELHVVW FT YDIKNAFGSVPHELLWEVLRRMGVPAQFIACCQGIYDAAAFTVGNAADGTT FT APIQLRLGVFQGCPLSPHLFTAVISPLLHALKRLPGTGVQLSAVDRPGASA FT YADDLKVFSDTKDGITRQHQLVTDFLRWTGMVANPSKCSTMSVQRDNRGVL FT KTANLTLQLDGAQIPALGMTEAYAYLGIGDGFDHVRRRVELAPKLRELKAD FT TTALMQSGLAPWQVVKALKVYIYPRVEYALRHLRPFQQQLQGFDRHLARGL FT RHLLRLPTSATTEFLYAPTSRGGLGLLPLTEVHGALQIAHAWQTLHSPDPA FT IRRIARVQLRQVADARHRLDAEHWKERGEELCERLLNSQLGTSAHAPPKRR FT NCDIGSLWVDVQRHLRSLGLQLQTAPADTHTGAPAQPLQLRVPHHDKWLTH FT KDVLRHVKLHIKNNHWHRWTSMRDQGKTARAHGGEGSGFLTQPRGMWEADY FT RFAVAGRLNQVDTYSVLKRRRLRSHDRCRQPGCHRAETLAHVLNHCPGTMD FT AVRGRHDGALKRIERELHASATDRRDRVELRVNQTVPSLAGPALRPDLQLY FT NHTKKTVAVVDLAVAFEEQASDDASSSALSLIASHKRAKYDRIKRHLERQG FT WKVHLSALVYGSLGAVASGNYQVYTTHLGLLKRDAKRLDRQLSVECIQSSR FT RIWNLHCSQHRTRQHQARPSQGPRGSRATETGGTPSQTSRR" XX SQ Sequence 6828 BP; 1300 A; 2463 C; 2045 G; 1020 T; 0 other; gctcggcctc gcggctgcct tcccaggcgc cgccgacttc gcgctctggc gcggcccaca 60 cgccgccgcc gagcctccaa gcgcgcccgt tggcttccgc agacgcaggg ctcgcggcga 120 cggccctcgc cagcccccaa gaccccccct acgatgtggc accacccggc agggcggccg 180 gcaggctgcc cgactcggta tcgccgggtg ctacactctc agccgccaca gctcgggcct 240 tggcggtccg ccattggccc ttggagctcg acagcgacag cagcgacgac gaggacgctc 300 aagaccccca cgccgccgcc ccaggacccc ccgcagacgt cgcgagtgtg cttgccccac 360 ccggcaaggc aggcagcatg ctcgccgacc cagcagcgct ggcagccggt ctggctcgcg 420 ctccgccgcc cccatcggca ccccaggacc caagccccgc cttccctgct ggccccgccg 480 gccagaaccc tcgcgccgcc gccccagccc gtgttgaagt ccacacagtc gtggcaccac 540 ccggcagggc gggcggcatg ctgcccgacc cggggttggt tgactcaagc ccagcagcgg 600 ctaccgcagc tactccagct ccggtagctg ctactgctac aactgctcgc gctgctgctc 660 gcgtcgccgt ggagcaccac gcgcacgctg agccgaacca agaacatcta ccgatggctc 720 gcgtgctcgt ggagcccatg caggtcgacg agtgcagcag ctgcgaccgc agcactttga 780 cagccgacga cgggagcggt gacgacgttg cagccccaag ctccatgctc agcaacgacg 840 tcgccgcccc catggacgtt gactccggca ccagttgccc tccaacgttg cagcagccgc 900 tccagcgacc gcgtgcgctg cacgtaggca gcaagcgccg ccgactcgac gcagatgacg 960 gtgaagaagc tcaccagctg caagaagagg aggaggctgg cattcatgcc ccagcgctca 1020 ggctatccgc ggccagcgct caaccggcct ccgtcctcgc cgtgtacacg cacaacgcgt 1080 cgcggttcga ctgcacgctg tgcgcgtaca cggccggcag cttcgcgtca cttctgacgc 1140 acaggaactc tcggcaccgc cgcaccgcat tcctcgaccg attctcggcg ggttgcgcgt 1200 gtggcgtgcc attcgcctcg aggctggctg cagcaagaca cgcgcaagcg tgcgccagcc 1260 tctcgagcgc accatcggcc gaggcttcgt cggcagcagg aacatcaagc cccactgccg 1320 acggagccga ctccaccgtc tcagccgtgg ctcacgctga gcccggcctg ccccaccaca 1380 acgacacgga gctcacagcg tcccccccgc tggtgagctc ctccgatgtt gaagtgcagg 1440 caacaaagac cgaagccacc gacaaccgct ggggcgcccc gcttccgcgc gtgctggtcg 1500 cgtctcgaat cgccgggcgc ctcgctcagg tgccaccccc acgctggggc cccccgctgc 1560 cgcgcaccac catcgcagcc cgcattgcga cgaggctcgc agccacgcct gccccccgct 1620 gggacccacc gctgccacga agcctggttg tgtcacgcat cgccgcccgc ctgctacccg 1680 cgctaccaga cgcgcctgca tgcgaggaag aggccaagga cagcgacacg atggactggg 1740 cgccaacttg gacaaacgag gagaccaagg aaagcgagcc acatgacgaa gcgccagggc 1800 aggtcgacga ggagaccatc gacgacgccg acggcgagtg gcttttgcgc ttcgacggtg 1860 cttgccgtgc aaacccaggc ccaggcggcg ccggcgcagc tctcttcaag cccagcggcc 1920 ccgtagtgtg gacttgttcc cactacgacc cgagcaccac ggcaacgaac aacacagcag 1980 agtacactgc gttgctgctc ggggccaggg ccgccgccga ccacggcgtc acgaagctgc 2040 gcatcgaggg cgacagcacg ctggtcatcc agcaagtgcg gggcatcttc gcgacgagaa 2100 gcacgcggct ccgagcactg cgcaacaagg tcaagctcga gctcgcgcgc gtggggagct 2160 tctcgctcca ccacatcgac cggcaggcga acggtcacgc cgaccgcctt gccaacgccg 2220 gcctcgaccg acgccgcacc aagctcgagt gcagtgtgca ccccgatggc aggggctgca 2280 ccaacacctc cgtggcgacc gcagcgccta ctgctcctgc agcgcccttg ccctcagccc 2340 ggcctcctgc atctacggcc gctccgtctc ctgatgacga ccacagcgac caaggcgaca 2400 tcgacgacgg cgaggtgtac gccgcaatgt gcatcagccc cgatgctgtg ccgcaccgcc 2460 gaccgcgcct ccgcctacgg cgcttgacgg acgaagagtc cgaggaggct ggcaacgtcg 2520 tggagaggtt ggcagcgtcg ctggcggcga agattgcaga tgcgccagac tgggagacgg 2580 cggagggcta catcacggcc ctaccgtacg ccctctacga caagctgcag ccgtactccc 2640 agtcccagca ccaacctcca cgtcaacagc agcagcagca gcggcaacgc ccacggcagc 2700 agcagcaaac acggcagcgt cgacagcgga gatgcaagcg cggcggtggc agccaacaca 2760 ggcagcggaa gacgcgccgc cgacggcccc cacgggtgac acgccaccac cgcgagcacc 2820 ggatcgatga agccctcgac gacctccacg cgctcgagag caggcgccct caggacagga 2880 cggccatcag caaggccagg cgtcgagtcg gtcgcatccg ctccgccctt gaccagcacc 2940 aattgcgcca ccgcttcgac accgacgaga aggcctgcgt ggacggcatc ctggccgccg 3000 cgcgcgacaa ggacagggcg gcatcagtga cgacaacagc gcaaacagcg gctccgcctc 3060 attctgcacc agcttcagct ccttcgtcgg cggtggacga cggaatctgc ccgattccgg 3120 gagacttgct ccatgccttc ttcacagacg tgaacacgcc gcgcacggag ttcgacgccg 3180 actcgcccat cggagcccgc tttcgggagg cgcttgctca gctgcccgct gccatcgctg 3240 ccacggagct actcatggag ccgccgtcgc cggacgaggt tgaggaccag ttgcaacgtg 3300 tacggggtac gtccagcccc ggcttggacg gagtggggta cgacgtctac aagaccttca 3360 cacagcaact cctaccggcc ctgcacgccg ctttctccag gtgttggact gatcagcgcg 3420 tcccacagag ctggaagctc ggagtcgtgc ggctcctgtt caagaaagga gatcggcagg 3480 accccgccaa ctggaggccg atctgcctcc agcaagccgt ctacaagctg tacgccggta 3540 tcctggccca ccggttcaca cgctggctcg acgccaacac ccggcacgct gacgcacaga 3600 agggattccg cgcggttaac ggctgcgggg aacacaattt cctcgcagcc acgctgacgg 3660 acaacgcccg ccgccgacgc cgcgagctgc acgtggtctg gtacgacatc aagaacgcgt 3720 tcggcagtgt gccccacgaa ctgctgtggg aggtgctgag gcgcatggga gtgccggcgc 3780 agttcatcgc gtgctgccaa gggatctacg acgcggcagc tttcacggtc gggaacgcag 3840 cagacggcac gacggcccca attcagctgc gcttgggcgt gtttcaggga tgtcccttga 3900 gcccccacct cttcacggcg gtgatcagcc cactcctcca cgcactcaag cggctccctg 3960 gcacgggggt acagctctca gccgtcgacc ggccaggtgc gtcagcatat gccgacgacc 4020 tcaaggtctt cagtgacacc aaggatggca tcacgcggca gcaccagctc gtcaccgact 4080 tcctgcgctg gacaggcatg gtggcaaacc cgtccaagtg cagcaccatg tctgtccaga 4140 gggacaaccg cggcgttttg aagaccgcca acctcacgct ccagctggac ggcgcccaaa 4200 tcccagcact cgggatgacc gaggcgtacg cgtacctggg cataggcgac ggattcgacc 4260 acgtacgccg ccgcgtcgag ttggccccca agctccgcga actgaaggca gacacgacgg 4320 cgctgatgca gtcggggctg gcgccgtggc aagttgtgaa ggccctcaag gtttacatct 4380 acccacgcgt ggaatatgcc ctccgccacc tccgaccgtt tcagcagcag ctccaaggct 4440 ttgaccgaca cctcgcgcgc gggctgcgtc accttctccg cctgccaaca tcagccacca 4500 ccgagttcct gtatgcacca acgtcgcgag gaggtttggg gctgctaccg cttacagagg 4560 ttcacggtgc ccttcagatt gcgcacgcct ggcagaccct gcactcgccg gaccccgcca 4620 tccgccgcat tgcccgcgtg cagcttcgcc aagtcgccga cgcccggcac cgcttggacg 4680 ccgagcactg gaaggagcgg ggggaggagc tgtgcgagcg gctgctaaac tcgcagctcg 4740 ggacatcggc ccacgcgcct cccaaacgac gcaattgcga catcggctcg ctgtgggtcg 4800 atgtccagcg ccacctccgc tctctcggcc tacagctaca gacagccccc gcggacacgc 4860 acactggcgc accagctcag cctctccagc ttcgcgtgcc gcaccacgac aagtggctga 4920 cgcacaagga cgtgctgcgg cacgtgaagc tgcacatcaa gaataaccac tggcaccgct 4980 ggacatccat gcgggaccaa gggaagacgg cccgcgccca cggcggtgaa ggcagcggct 5040 tccttacgca gccgcgaggc atgtgggaag ccgactaccg gttcgcggtg gcgggtcgtc 5100 ttaaccaagt ggacacgtac agcgtactga agcgccggcg cctgcgctcg cacgacagat 5160 gccgccagcc aggatgccat cgtgccgaaa cactggctca cgtgctaaac cactgtcccg 5220 gcacgatgga cgcggtccga gggcggcacg acggagcgct caagcgcatc gagcgtgagc 5280 tccacgcgtc ggccacggac cgccgggacc gcgtcgagct ccgagtgaac cagaccgtgc 5340 cgtcactcgc cggccccgcg ttacggcccg atctccagct ctacaaccac accaagaaga 5400 cggtggcggt ggtcgacctg gccgtggcgt ttgaggagca ggcgagtgac gacgcgagca 5460 gctcggcgct gtcccttatc gccagccaca agcgagccaa gtacgaccgc atcaagcgac 5520 acctcgagcg ccaaggatgg aaggtacacc tctcggcgct cgtgtacggg tcgcttgggg 5580 cggtcgctag tggcaactac caggtgtaca ccacacacct ggggctactc aagcgcgatg 5640 caaagcggct ggaccggcag ctgtctgtcg aatgcatcca gtccagccgc cgcatctgga 5700 atctacactg cagccagcac cggactcgcc aacaccaggc gaggcccagc caaggaccaa 5760 gaggcagccg ggcgacggag accgggggga ctccgtccca gacaagccgc cgctaggcgg 5820 aaaccaggcc caagacggcc gacagggccc cacccaggta gggaaccgcc ctagaaaccc 5880 atttcggtgg tcgactcgaa ggccttacct attttttcct tagacattca attaggtagc 5940 gaccaaatta caaatttggt aacgagtaag ccaaatggta atacacaaaa cttttctgtt 6000 ctaatcagtg tgaaaactgg ttttcgcctt ttggcggact ttttcactcg catttttggg 6060 caatcgtctg cggctagctt gctagcggcg gacgagcggt ctccgggggc gttcaccttt 6120 cccccgcgag gccaactaca ccgatcttct ctacactttt ctaattcgcc tccgtcttcg 6180 gtcttcggct gtcggatttt tttctttttg accaatcaga gcgcgccatg cgactcttct 6240 ggccaatcag agaccgggcc ctgtcctcgg acagcgaggc ctccacggcc agccaatcaa 6300 gtctcggcag cgacgcgtct ttctatagcg cagctgacga ggccgatctg gcggcccccg 6360 attggtccga ctttcggcca atcagcgacg acgagggggc aggggtttac acttttgccc 6420 ccgtttcgac ttcaacttca ggccaaaatg gcgatttcga ccctccacgc gccgtgccac 6480 tgctcggcac cggcggcgat tcagcgggtg caacttcggg cacgtgtgca acacatgcag 6540 cgcccattgc acgccaagcg gcatcgcggg acgacgcctc ggccgctcaa gcgcagcccc 6600 gcccttccag cacgacctcg cgccgtttgg cggatcgcca tcaagacgtg cgagagccag 6660 gcggggtcgg gcaaaatata cttactctaa gtatgcccga atccctgccc tctcaggctg 6720 aacgcggccc catacttgat ctaagtatgg gagggatccc tggcctctca ggctgtacgc 6780 gagacccgta cggccgaatc ccctggcctc tcagcctgta cgcggggc 6828 // ID Gypsy-17_PR-I repbase; DNA; PLN; 10982 BP. XX AC AAQX01002873; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-17_PR_; KW Gypsy-17_PR-LTR; Gypsy-17_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-10982 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002873; Positions 15633 4652. XX CC Positions [6700-7092] - Integrase core CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 3233..4735 FT /product="Gypsy-17_PR-I_2p" FT /translation="MVPAGIRLDLADGSINLPDEVRIQLAGRRQLFGDKFQ FT QIKLGEHSVIHVGRSVELRKGFITPEHRKLWITRGDRWVPSVVAGLGKTRY FT LKVTNISDQTLVLQDDTRVPMLLSSGQVPRIPGFVLIGSRRYTEWQNLAFQ FT ATTDQIEKEEIDAEPEGPMVDRPRYDPPRKILRRDRSTPKPVVATITTEVP FT AEAVAAADPKEETPINDLDRAEDEEVCLHEGGDLFAEDVEGHMAILPEVSS FT STDEVSIEDIQVGDSEANTPEEIDRLRQIIWRRRHLLIGKGNALPPAANGA FT VCDIDVGGATPVAQRVGRVAPQFREKLSELIKSLLSAKMIEPSTSPWASPI FT VIIIKKNGVDIRLCIDYRLVNSLTRLMVYPMPLVNNLLEDLDKAIWYCSLD FT MASGFWVVSMTERARKISAFVTPFGLFEWTRMPFGLKNAPQIYQRLIDNAL FT YGHFRISPNTDPSKLIDVFKYGEPEDEPRPSVLGRRSYIDDILITAGSLRE FT SRKTA" FT CDS 5440..6435 FT /product="Gypsy-17_PR-I_1p" FT /translation="MEIRKCTKGEDEILGAIAASITPRSKVDDALIAIAPV FT KKPKQTIAKLPPTLGLDERLLVVSFDGSTRVKRSAGAYSAIMWQLPEWSIV FT AAASEFAVVLTVNEAEYRGLLLGFKLLSDRDKGWVIICGDSNLIIRQMRGE FT IDCKAPGLQVLREKAMGQLKSWPTHDLLHVKRDWNQSADRLASTALQREAG FT AIVSAEGEIDDLIAINRLGEVLKTANDDSINQVTAVKRSARRTRQVSTSLQ FT EAIVQRMRSERIARAQNEEKWIGDLKAYPKGDVADISSKDARLCAKIAEDY FT DVGEGDLLFYCRNMARTDENRDSMAHLVVPATLHQDFLHH" XX SQ Sequence 10982 BP; 2665 A; 2858 C; 3298 G; 2161 T; 0 other; atggtgcgcg tgcccggaac ttctggtgat tcacagggat ttcaccgtga gtctaaccaa 60 gaggatgtca agatcaagat caaactaggg aatgagtcgt cggcggaaga tggatcgccg 120 tcgacgatgc tgatcgcgca aggatcatcg agtcaacaga gtactgggag ggactcttga 180 taccaagaag gaggcgggct cagcaatgga cctaaaagag aagccttacc ccctccccag 240 gtcccttcgg ggacccccgc ggattgcgat gcgaatcgcg atccaccgga tgaagatccg 300 atggcgaaag ccaaaggatc ttcacccaaa acctgatgga aggtatggat cttggacacc 360 gtgaagcttg acggagcgga gggagggcag cactcggggc gagaccggag cggagactgg 420 aaccacttga ggggtagaac gaagattcga aagtgattga ttgaggtctt tagctcgcta 480 gccttctcgc tactctagac ctactggata cacactactt gattctttac tggatactga 540 gttacttcag ccaatgagag agcgccacgt cgaagcccat cttgtaccta caatcttgta 600 cccacacgtg gcgtaatcga cagtggcgta atcggcgtgg gttcggattg gaccggttcg 660 ggttaaccgg ttcacggtca acaaccgata ctaaaccggt aaccctccat accctcaata 720 aaaccactcc tccgatttcg cgatcagcgt cgaagaagcg atcgccgacc ggatgcacca 780 agatgaaagc gccggagtcg gatgccgaag acccgggaga tcgcatgatg tggacggagg 840 aacaattgga gtctgcattt taccggaagg acttatacaa gttcttgacc gaaaatcggg 900 tgatgaagat catgcacccg aaactgattg gggacctaca aggtccagcg aagacgccca 960 gagaagtgtc taacgtgctg gacgccacga acctcctgat gcgtatgctg agagaagcgg 1020 gaattgttct tggcgcgttt gacgcgaacg atctgttcga tctggaaccg gaggcgatca 1080 gagaagccac tctgaccttg ttcgccaagc tgacaccgat cgtcggtagc atcgtcccaa 1140 tacagcgatc agtatcgcct acgactcgca gccagacggg ctcgtcgcac tatgcctccg 1200 ccacgtcgga agcaggctct gacagctcag tcgagccgca gcgcatgtcg ctcggaccat 1260 ccggagcagc catgttgcga tcgcgtatgg atgcatcggt aatccagccg tcgatcgaga 1320 acagaccggc tcaaagtcga agtacgcccg accgcatgca aaccttcttc aactcagcga 1380 tggaaggttt cctgaaagaa caacagcaag cgtcgacagc gccgcaagta tcgagtcata 1440 cggtccttga tcgcccagtg gccgatcgga cccaaacgcc tatcgtccaa gatgtcgaga 1500 tggaatcagt tggatcaaac cacccagagc attcgcaccc aagcgaatac gatccggata 1560 atctgagcgt tggagtaccc actcgcgcag cagttgcgtc cgccgaaact tcggggagtg 1620 gatagttctc ggccacgcgg atcagagtct ccgcgatctc agaactcaat gagttctccg 1680 gcaaagaccg cgatgagaat cgcgccagaa gctggttcag caagatgaag tcagccttca 1740 tccgcgatca ggctcccgac agcgagaagt gtttggtgtt cggagacctg ctcacctgac 1800 cggtgcgtaa ctggtactgc caactgagca gaaccacgag aaacaactgg aagagtctgt 1860 cccagacctt ccaaacgcag tattatggtc gaggagtatc cgtcgcgaga cagtactacc 1920 acgctcggaa gcgctcagaa gaatcgccgt tggaatactt gcatcgccta aatgtcgctg 1980 gcgtcagggc ccacttgctg atcaaggatg ggtcgatcga agtccgccgt gaacatgtcg 2040 atcacttcat cgaaaccctg aacgatcgcg agctagcgaa ccagttagcg ctgctaagga 2100 ttcccgatgc agatacgcta gaggaaaccc tgcgatcgcg acagcgtgct aaggcccgac 2160 aagggaaaac ggtgtatggg tcgatcaaag cgaaaccaaa ggcgccgaca ggtgacgccc 2220 catccgcaaa cgtccgagct gttcgtgcga tcaggaagac ggcagcttcc ggtgattcgg 2280 agcctggaac cagtggatcg gagggagagg gcgatccgcg caggatttac gtggctgcaa 2340 cggccgatca acctgaacga tcgccgccgg atcggaaccc aagacgccag actcgagacc 2400 cgaatcatcg ccgtttcgac aagtcgactg gaccgccgga tgaagacccg ccgaggaagc 2460 catgctctca ctgtggatcg accaagcatt cggaattggg ctgctggcag agattgtcgt 2520 gcaagaagtg cggtaggaag ggtcacccga ctgatcgctg cctctacccc gtgcaaagcc 2580 tgcggtgaga tccatggcgc gggtgagtgc ccgatggagg agttttataa cttgatccgc 2640 caattgtaca accccaacaa gcacggcggc atgctcccgc aagtcgtcga gaagatgtta 2700 aactagatcg ctcgccggaa tggaacccgg tacgagacga gcgttctaag ttttgcattt 2760 atgcatatgt cgaaaaacag tcgctgttgg aagtgagtga gttgatccag ccgacggaca 2820 atacacgtga cctgcatgat tatcgtgtcc cggcaatctc ccatcttcat caagccgatg 2880 aatactcgcg atcagaggtg acgacggcct tggagcttct acattgagaa tcacgaggat 2940 attggaagta ccatgtgcag gataagaagt tccggcaagc gaaagccgtg gggaagatca 3000 acaatgaaaa agccacactg ctgtttgaca gcggcgccga gttgtccatt ttggatgctg 3060 cctttgctcg taaggttggg tgctacattg acagcagtca agagtcagag tggtaagaac 3120 ccctacatgg ccgaaggacg aacccgaatt aagatcacgc ttgcggggtc gctggtgtat 3180 tacttcgatg cttggatcgg accccccacg ggcggtcaag acttgacact ttatggtacc 3240 agcgggaatt cgactggacc tggcagacgg ctcgatcaat ctccccgatg aggtgcggat 3300 ccagctagcc ggccgacgtc aactttttgg agacaagttc cagcagatca aactcgggga 3360 acacagtgtg atccacgtgg ggcgatcggt tgaactccgc aaggggttca tcaccccaga 3420 gcatcggaaa ctctggatta ctcgaggcga tcgatgggta ccgagcgtgg tagcaggatt 3480 gggaaagacg cgctacttga aggtcacgaa catcagcgat caaacgttgg tgctgcagga 3540 tgatacacgt gtccccatgt tgttgtccag tggccaagta cctcgcatac caggtttcgt 3600 cctgatcggg tcgcgcaggt acacagagtg gcagaactta gcatttcaag ccaccaccga 3660 tcagatcgag aaagaagaga tcgacgccga accggaaggg ccaatggtcg accgcccacg 3720 atatgatccg ccacgtaaga ttctgcgacg cgatcgtagc accccgaagc cggtagtcgc 3780 cacaataacc accgaggtgc ctgccgaagc ggtcgccgct gccgacccga aggaggagac 3840 accgatcaat gatcttgatc gggcggagga cgaagaagta tgcctacacg aaggtggcga 3900 tctgtttgct gaagacgtag agggtcacat ggcaatcctt cccgaggtgt ccagctcaac 3960 cgacgaggtc tcgatcgaag acatccaagt gggtgattcg gaagcgaata ccccagaaga 4020 gattgatcgc ctgcggcaaa tcatctggcg tcgccgtcac ttgctgatcg gcaaaggaaa 4080 tgccctgccg ccagccgcga acggagcggt atgtgatatc gatgttggag gagcaacgcc 4140 tgtggcccaa cgcgtcggac gtgtagctcc gcagttccga gagaagttgt ccgagctgat 4200 caaaagtctg ttgtcggcaa agatgatcga accttcgaca tcgccgtggg catcaccaat 4260 cgtgatcatc atcaagaaga acggtgtcga cattcggctg tgcattgact accgtttggt 4320 caacagtctc acccgcctga tggtgtaccc catgcctttg gttaacaatc ttttggagga 4380 tctggacaaa gcgatctggt actgttcatt ggatatggca agtggcttct gggtagtttc 4440 aatgacagaa cgcgctcgga agatctcagc ctttgtcacg ccgttcggcc tcttcgaatg 4500 gacgcgtatg ccgttcggcc tgaagaatgc cccacagatc taccaacgac tgatagacaa 4560 cgcgctgtat ggacatttcc gaatcagtcc aaacactgat ccttccaagc tgatcgacgt 4620 gttcaagtat ggtgaacccg aggatgaacc gagaccttca gtgttggggc gtcgatcata 4680 catcgatgat atcctgatca ctgccggctc tttgagagaa agtagaaaaa ctgcttgacg 4740 cctgtgatcg gtggaacttg tcgatcagcg tggttttttt tttggggata ccgcaaggtc 4800 gattaccttg gtcatcgagt gtcttcggaa gggttggagg ccaagccgaa agatctcgag 4860 tcactggaga gactgccatt cccgaaaacg ttgcgatcga tgcagtcatt cctcgggagc 4920 ctgaactatt atagtcggtt catcgaggtc ttcgcggtgt atgcggcggt cttgtacgaa 4980 cttcgtgagg tggacttcca cgagataaat cgcatcggaa atgccgatca aacagacaaa 5040 gcgaatgacc gctgggtccg tgcgaagaca gcattcgatc tgctgaagtc caagctggta 5100 actaccccga tcttacggca cttcgattct gatcgccaac cggtgatcgt catttatgcg 5160 aacaagtggg cgatctctgc tgcgctggtg caggagcacg aaggaacgta ctggccagtg 5220 attttcacga accgtacgtt gaagtcgaac gagttgaatt acggtatggt cgacaaggaa 5280 gtgctcgcac ttcttcgaat cctggacgta tgttacacca ccgtgaccaa ccgatcgatc 5340 aaagtactgt caagatactc gacactcgct tggcttttga gatcaacggg tttccaagga 5400 cgtctaggac gttgagccgc tctactgtcg gaatggacga tggagatcag gaagtgcacc 5460 aaaggagaag acgaaatact gggggcgatc gccgccagta tcactccgcg gtcaaaggtg 5520 gacgatgcct tgatcgccat agcccccgtt aagaaaccga agcagacaat cgcgaagctt 5580 ccacccacat tgggtctaga cgagagactg cttgtcgtaa gcttcgacgg ctcgacacgt 5640 gtcaagagga gcgcgggagc atacagcgcg atcatgtggc agttacccga atggtccata 5700 gtagccgctg cgtcggaatt cgccgttgtt ctgacggtga atgaagccga ataccgcggt 5760 ctgctactgg gtttcaaact cctgtctgac cgagacaagg ggtgggtgat catctgtgga 5820 gactccaacc tgatcatccg gcaaatgaga ggggagatag actgtaaggc gccgggactc 5880 caggtgttgc gcgagaaggc gatgggacaa ctgaagagct ggccgacgca cgacctactc 5940 cacgtgaaac gcgactggaa ccaaagcgct gatcggcttg caagcactgc cttacagcga 6000 gaagcagggg cgatcgtgtc ggccgaaggg gagatcgacg atctgatcgc gatcaaccga 6060 ttaggtgaag tgctgaaaac ggcaaacgat gactctatta accaggtgac cgccgtgaag 6120 cgatcagcga ggaggacacg ccaagtatca acttcgctgc aagaggcgat cgtacaacgc 6180 atgagaagtg agcggatcgc cagagcacag aacgaggaaa agtggatcgg ggacctgaag 6240 gcttacccga aaggagacgt tgccgatatt agctccaaag atgcgaggct gtgcgcgaag 6300 atcgccgaag actacgacgt aggcgaaggc gatctgttgt tctattgcag gaatatggct 6360 cggaccgacg aaaaccgcga ctcgatggcg catctggtgg tccccgcaac cctgcatcaa 6420 gatttcctcc atcattagca tgccagtttg gagggcggcc accacgggat ggccgtacgt 6480 accagcgaat caaggcccac ttccactggc gaggcctatt caagagtgtc cagagattcg 6540 tgggcgaatg tttgaattgt gagactggga aagggcgccc agtggtacag ggtgagtcgt 6600 caggtaacgt acaggctacg tacccattcc agataattgc gatggaccat ataccgtctc 6660 tgccgaagtc tttcaagggc aatacggagc tgttggtggg tagatctgtt ctcgggatat 6720 gtgatcgcca aggctagcgc ttcgcgaacc gcacagacca tcgcagagaa ctacgaagaa 6780 agtgtcttcc gtcgttttgg ggccagtgag gcaatccgcc atgatcggga acccggtttt 6840 atgtctgatt tcttccgcgc attcaaccgg gtaatggggc agagacaacg cgctattatg 6900 gcgtaccgcc cacaaggtta tggcacggca gagaggatgg tgcagacact cactcgcgcc 6960 ttgaagatgt acgtcgcaga tacgaatgag caggattggg atgagtacgc cgagaggctg 7020 accttcgcga tcaacactgc tcaagatcgg gtgcgcggcg acacgccgtt ctatttcgtg 7080 catgggtggg acccacgatc aacgttagaa gcgtcgttgc cgctcggcaa tatgcggagg 7140 tgtgaccacg agccgcgaag gtggcggtat cacattcaac agcaacacca gcgagcgcgt 7200 aaggaggtga atgaacgttt caaggcggcg atacaagcta gagccgatca acacaacgaa 7260 ggcgtgagac cccacgagat tgaagatggg acgcgagtgt ggcttacctc gaccgagtta 7320 aggaggacta tgcccggaag cttgcgcata tgtggcatgg accattcagg gtgattgaga 7380 tggtcggtcg ctatgctgtt cggctcgaag tagctcacac ggagtatcgc ctgtttccga 7440 tcgtgcacgt caccaagctg aagaaggtga ggagtttttc tgatcgacca aacacgacgc 7500 taaccaccca tgaagaaaat cgttttgatt tcgatgaagc acttctacca gaagatagct 7560 gggagaatga tttgggtgat aacggattcg aagtcgagaa gatcgtggat gtccgatccg 7620 ggcgcaaaac cagatccggg cgggtccatc gagaatacca aatctactgg aagggctatg 7680 ctgacccatc gtgggtggac gaagctgacc tcaactgcgg ggcgctgctg tatgtgtttg 7740 agcagaatcg cactatccgc agtggtacaa tcacacgagt tggcggagga caatcagtag 7800 caaaagctgc cgattagagg tagatacggg tgcaagacgg ttgcacgcgg tggtggaagg 7860 ggtttatgtg gattaagtga gtattaagca aggcgatcat ctgtggccgg ccccacgaag 7920 acgagatagg atgaaggaag acagtgatcc tacgtagttt tgaagttcga cctacacgat 7980 cacggagagg ccaagggggt gaacttaccg tccagacgcc cgattccata tgctggatgt 8040 gcctggatgg ccgatcggtg ttgtatacgc catggttcag caatgtcggt ctcgtgggtg 8100 atggcgatca agtcggtaaa cctgggagaa atgccgtggc caggatacca taccttctcc 8160 tcaccggttc tgggccggta tacgaagaac ggatccaaca agatgtcaag gtcacaccgt 8220 ccctctatca gcccacgtaa tatgacgcgg agaaagacct tcagccgagc accgaaacgt 8280 gactgacgct gcttgcgctc cccagccaag gtatcgaggt aagtctctcg cgcacgacga 8340 tcagcgctga cagtgaagcg atggagagcc tcccacacag cctgggaatg ctcatggatg 8400 aggtcctgat actgctgagc cataggcgcg aaccatcccc agaggctgac agaaattggg 8460 gcaatcatgg tgtcgaagat ctcccagggg cgggttgcgt acaacgcctg cacttgggtg 8520 gtggtaatca aatccgaccg ccaagtgcga gagtgagtag tgcaaacagg aatcaaccag 8580 ttcctggggc gacagaaatt gtggtaaagg agatccaagt ccatctccag gacgcagaca 8640 cggcgaacgt atcgcacgtc ccacggggcg acatcagctg ctgggcgata cgcatgagag 8700 taataccctg ggatccactc attcaggggt atcgaagtag cggcgagccg atcgtaggca 8760 gcacgtccca gaagaacgtt gcggtgcaca cgtgcacgac gaggaacact gccgtcgctg 8820 ccggaagtgt ctggcgaaga gacgccaccg ggagcacctc ctgggtcatc tggggaaccg 8880 cccggcgatc ggccaggtga ttccccggcg ggatcgtcag ataggagatc agcagtgtcg 8940 ccggacgagg agtatccgac actgatcggt ccacgcgggg aaccttgacc cgaggggtcc 9000 agtgattgac ggcgtcgtcg atccgaagcg cgagaccgtg acacggccgc gagtgtagct 9060 tcgtcatcat cacttgaact gctgagtcca ggagaggtac ggcgaacgcg catccggctt 9120 cctccacgga gccgtcgccc gatatgtgcc gactgcgaag acacaggaga tcgtgatcgc 9180 gatcgcgatc gtggcgaacg tcgagaggtc gatcgcgagc gagagtgtcg cgaacgagac 9240 cgccgtggac gcggtcgcga agacgtcgac ccgtgacgcg atgtgctttt ggcgtcgcta 9300 tcctcgtcgt cgtcctccgg cccatcgtca tccgggccac catggtcttg gggattgccg 9360 ctcggtcgag agaacgaagc cagcgcggcc acacgctgac ggatcgcatt gcactcgtgc 9420 atcgctcgat tgcgagtgtc gatggctgcg gcttgatcgg tcctagccgc attcaaactc 9480 tcggtcagag acatattttc gcgtgccagg gcggtgttct ggcgttctag tgcttggata 9540 cggttccggt ccccttggga ctgcaaaatc tggccttcca acatcgcgat ggtggtctgc 9600 gaggtcgcca cttgagcacc tgagcataga acagcattat tagagggtgg agcaactaca 9660 actgaaacgg gagggacgta cgagcatgtt gaagcgaaat ggcggtgcga tcgcgctcgg 9720 ctgttagctg ccggagttgt gtctgggctg ccaagaattg attagaagcg tccgaggcat 9780 ggagtcggaa ttcttctcgc tcggcatcac tgcgggctac ccgctgacgc atcccagtga 9840 gttggcgatc ggtgtcgcgc tgtagatcca ttagatcatt ttcctgccgg cgaacggctg 9900 cttccaggcc tgtcacatca gcttctaatt gttgccgacg gccgtcggcc acactatgct 9960 tatcgcgcgc gagacgcaga tccgcaataa cccggtcgcg gcaggcaccg acctccacga 10020 tctctcgctg ttgcgagaga accacatgag caaggcggga tgatcgcccg ggacgaagtt 10080 gatctagtcg ggcaaaacgg ctaagggctg gaccagctga cgacgctcgc acccgagttt 10140 ccaaatcggc agcctgtctt tcgagaacag caatctggtc gtgaaggtac gacatagtgt 10200 cggcgtgggc acgtcgctcc gtatccaaca gagtacgagc agtatccaat tcccagcggt 10260 tgtctaggcg ttgagcaagc tcgccctgac aatcagctag cgctagctga agcgtaccac 10320 gatcatgacg gagacgagag atctcttcgt ccacggcgca gacgaacggg gccgccgagg 10380 aatatacacg atccagctct agcgcgagct gacgcacccg cgcctgcagc acggcatgat 10440 cctcagcaag gtcggcatat gtgccggcag cgatgtactg gtcgttaagt cgccccatca 10500 cgcggtccag cgtgtcagcg gcggcgcgca atgtatcacg ttcaagctgc gacagaattg 10560 cagaggtgga cggcgcggac gaagacccat gtggtggcgg cgtggaagtg gcagcggcgg 10620 aggaagcgta tatactggcc ccgcggagat tcccgtggcg caagaagtat tcgggacctg 10680 acgtcacatg ttgggggccg accgcagcgt gattgtcggt aggcggggca gtggcaggag 10740 gaggagccga cgatgtggga gttggagacg tccccgaagc agttgccgac gcagtgggca 10800 catcacttga cgccgaattg gcggaaggtg tcgtgggagg ctgactctgg gacgacattg 10860 gggcttgagc atggccggcg ggtgacagcg accaggtgaa taagctacta gcggcgcgtg 10920 gcaagttggg gactgctgcg aggaccgagc gctgtacgat ccctcctcgc gcagggggcg 10980 gt 10982 // ID Gypsy-4_PPa-LTR repbase; DNA; PLN; 1204 BP. XX AC . XX DT 04-NOV-2009 (Rel. 15.07, Created) DT 04-NOV-2009 (Rel. 15.07, Last updated, Version 1) XX DE Long terminal repeat of a Gypsy-type LTR retrotransposon - DE consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-4_PPa-I; KW Gypsy-4_PPa-LTR. XX OS Physcomitrella patens OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; OC Moss Superclass V; Bryopsida; Funariidae; Funariales; Funariaceae; OC Physcomitrella. XX RN [1] RP 1-1204 RA Bao W. and Jurka J.; RT "LTR retrotransposons from moss."; RL Repbase Reports 10(7), 964-964 (2010). XX DR [1] (Consensus) XX SQ Sequence 1204 BP; 342 A; 219 C; 338 G; 305 T; 0 other; tgtcgtgttg taacacgagt ataccgtgaa aatataaaga aaggggactt ttattaatgt 60 tcagttacct cgaatattgg gagcaacgac caattccagt gcaaatactg agaggccagg 120 ttcagtcacc ccgttacagt cagccggggc atactgaaat gctccgttcg attccaataa 180 cgggagtcag cagaaaggga aaggaccaat tcaacgacgg gtgagcctgg ttcgaagagc 240 caattggatc caatttcaag acatccaatc caggtcctct tacccaatat gagacctgac 300 ttggtcgggc aacccaatgc ggtccaatta cgggaacatc caggtcttac tacgggcctc 360 ttagccaata tgagacctga attggtcggg cgactcaatg tggtcccgat tacggggttc 420 cgattccgtt tcaggctgtt ccgtcctttg tgccgttccg ggaacgtcct ttcggtaaaa 480 ggatctctta aaggtaaaaa cggaggagaa agctctgacg gcgggagcca attccggatc 540 caagacggaa gattgaagaa attcagaggc tagggtttga aagaggggag aattagggtt 600 aaaggggagg ataggttaag aaatgaaggg ggagagaata aggttttggg agaaggatcg 660 gagagctagc ttcatgcttc ggggcgggga aaaaagacag agaattgggg tttttttttc 720 ttcatagggt tttgggaaga ctgaggcaat cgttgctgaa gtcagtgttg taatggtgaa 780 tcgggatttt taatgaagtg ggtgtgatta ctcttgactg ttttgtgaaa tcgaagttac 840 gtctgtgatt gaagaattaa aagggtgtct ataggattga gtatgcggag tgaatgaaat 900 ttattgggtt aatctaacga gacagtcagt ggatacaaga tcgtgagtat aaagcggtat 960 cgaagattag cagtttgggt tgttcggggt tctctgtaac gtctagagac ctaccggctg 1020 gggcaaaaag gacttcggcg agcagtcgaa ggacatccgt atagatttac ggtatattct 1080 tgcagttgtt tatattccaa cagtcaaaaa ccgatagact gcttgaatat tagcgaatct 1140 ccatactacc ttctacagcc agacgcccgg cgcgttctcg agcaggaaag cacgtaatac 1200 gaca 1204 // ID Copia-7_PR-I repbase; DNA; PLN; 5068 BP. XX AC AAQX01001268; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-7_PR_; KW Copia-7_PR-LTR; Copia-7_PR-I. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5068 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01001268; Positions 26559 21492. XX CC Positions [1782-2300] - Integrase core CC 'CTTAC' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 984..2984 FT /product="Copia-7_PR-I_2p" FT /translation="MDEAADEQEVDTEVAELGVAELRVQEDAESAGAEPVD FT GAAADNLADANQGAPAEAQGHWWYFDTASNSHVIGDRAYYVSFTEDTTEIQ FT SVHGITPNLASRITGVGTVAIVTEVDGEQTVVYIDDVFYIPRAEFELFSPG FT LARDQGFEFAVDPATMNFHISIEGRTVIVATQHDAMWCFRVTHPSIPGNLN FT IGPECRAVCNYTVAEGVAPLSLWHERLGHTCPQYLKTMVDKGLVRGMMLTQ FT RQLDTCDACHLAKQKKSKHRKKLDRALKRPNQVVYADLLIPSKSNGTRFEA FT VLLIMDGYSRYVTVKLLTSKSSTKVNQHLKQYVLWAERQAGRSMGEISFEV FT NQALTDKGGEFVNTAMADWYAPQGIEHVRVGPKSSQLNLCERTHQSLVEMT FT KATMLQAGFPVSLWPEALRNAAYVKNRVYNKGTQGIPYEKMFGIKPDVHHI FT RKFGALAYVHVPVTPGRRKHHHNAKIGYALGYAEDVVGCKVYYPDERTAKF FT VTDLRVAEDVVYRDRHDAELDEDDLSSLHFTKPVPDNDACKSSMAIVEINS FT TMPSGLEEGEDVVDESEIMDTIELNSLYDAEDVDDNVEGITDVVNDADVDT FT GRVRRDHGACEEVEHTESQETASTGHEEPVADGEDGVGADSVNMETAITAD FT SEPGLGLGRRYCFCCGLR" XX SQ Sequence 5068 BP; 1372 A; 1087 C; 1527 G; 1082 T; 0 other; gggttatgag cccaaagcac gggaggtcat cagattccaa gatgtcgaag ccgatgaagt 60 acaccagcga tggagtgccc aagaattggg atggcaagga ttggcagacg tacaagtggg 120 ccatgttgac agtgtttgag gagaacaacc tggaggacat cgcggacagc acgttgaccg 180 cggcaatgct ccagacctct tctgaagaga agaaggagga gttcaggctc aaacaagtca 240 agattaagcg catggtaggg acgtcggtgc ctccggagat cctacagcaa atcagcgaca 300 agaagaccgg atcggacatg tgggaggaac tttgcgacct gtttgagggt aaacagagtg 360 aagcgactcg agcctacacg attcgtcgct tggtgagtga gctttggcaa atgaagctat 420 cacctggagc agatgcaaat ctccacctgt gcaagatgtt cagtgtacga acagagctga 480 cgaacttgaa gtacactatt gaggatatgg acatggtcga gatgatgctc gagagcctgc 540 cgtaccagac agagttcgag agttaaaagt catcgatccg ctatggagca gatccaagtg 600 tgtacacccc gattaaagtt cgcgaattga ttcgtgcagc tgcagtccga cagactgcat 660 tccgcggcaa acggagttgg aagagcggga accggaagca tgatggtgga aaagatggcg 720 atcatgggaa aggtggtgac cacgaaaaag gtggccagca gggcaagtca aagggcaagc 780 caagggcatg ttttgtttgt ggtagtgaag atcacctcag ggcaaactgt ccggacaagg 840 acagtaagca gagtggtgct actggctatg agcaaaagcg caaaccgaag agcaacgtca 900 cgattcgtca aatcggtgac gaaccaacag gtgttcgtga ttataattcg agagtagttg 960 ccggtgcggt gactgagcaa ccgatggatg aagctgctga cgaacaggaa gttgatactg 1020 aagtagcaga gttaggtgta gcagagctac gtgtacaaga agatgcagag agtgctggag 1080 cagaaccagt tgatggtgca gctgctgaca atctggcgga tgcaaatcaa ggtgctcctg 1140 cagaggcaca aggtcattgg tggtatttcg atacagcctc caactcgcat gtcattggag 1200 atcgtgcgta ctatgtgtcc ttcacggaag acacgactga gatacagagc gtgcacggca 1260 tcacgccgaa cttggcgtcg cgcatcactg gagttgggac tgtggcaatc gtcactgagg 1320 tggatggtga gcagacggtg gtgtacattg acgacgtgtt ctacataccc cgtgctgagt 1380 tcgaactgtt ctcgcctggg cttgcacgtg accaaggatt tgagtttgct gtcgaccctg 1440 cgacgatgaa cttccacatc tccattgaag gaaggacggt gatagtcgcg acgcagcatg 1500 acgctatgtg gtgcttccgg gtgacgcatc cttcgatccc aggcaacttg aacatcggtc 1560 cggagtgccg agcagtgtgc aactatactg tggccgaagg ggtggcacca ctgtcactct 1620 ggcacgagag attgggccac acgtgccctc aatacctgaa aaccatggtt gacaaaggtt 1680 tggtgcgggg aatgatgctc acccagcgtc aactggacac gtgtgatgcc tgtcatctgg 1740 cgaagcagaa gaaaagtaag catcggaaga aacttgatcg cgctctcaag cgaccgaatc 1800 aagttgtgta tgcggaccta ctgatcccaa gtaagtcaaa tggtactcga ttcgaagccg 1860 tacttctgat aatggatggt tattcgcgtt acgtgacggt gaagttgcta acgtcgaagt 1920 cgagcactaa ggtgaaccag cacctgaaac agtacgttct ttgggcggag cggcaagctg 1980 gcaggagtat gggtgaaatc tcgtttgagg tcaaccaagc cctgacggat aagggtggcg 2040 agtttgtcaa caccgccatg gcagactggt acgcgccgca agggattgaa cacgtccggg 2100 ttggacccaa gagttctcag ttgaaccttt gcgagcgcac acatcagtca ttggtggaga 2160 tgacgaaggc aacgatgtta caggcaggat ttccggttag cctgtggcct gaggcacttc 2220 gcaatgcagc ttacgtgaag aaccgggtgt acaataaggg aacacaggga atcccgtacg 2280 agaagatgtt tggcatcaag ccggatgtgc atcacattcg caagttcgga gcgttggcat 2340 acgtgcacgt ccctgtgacg ccaggacgcc gaaaacacca ccacaacgca aagattggct 2400 acgcgttggg ctatgcggag gacgtcgtag gttgtaaggt gtactacccc gatgagcgca 2460 cggcaaagtt tgtgaccgac ttacgtgtgg cggaagatgt tgtctatcgt gatcgacacg 2520 atgctgagct ggatgaagat gacttgagtt cgctgcactt taccaagccc gtgcctgata 2580 acgatgcatg caaatcgagc atggcgattg tcgagatcaa cagtacaatg ccttctggac 2640 tcgaggaggg cgaggatgta gttgacgagt ctgagatcat ggacactatt gaacttaatt 2700 cactttatga tgctgaggat gttgacgata acgtcgaggg aattacggac gtagtgaatg 2760 acgcagatgt ggataccggc cgtgtacgac gtgatcatgg agcctgtgaa gaagttgagc 2820 atactgaaag ccaggagact gcttcgactg gacacgagga acctgttgcc gatggcgaag 2880 atggtgtggg tgccgacagt gtcaacatgg agacagcgat taccgcagac agcgaacccg 2940 gacttggact cggacgacgc tactgcttct gttgtggctt aagatgaagt tgtgtcggat 3000 gctggaacat gaggatcgtc gatagcagaa gaagatcacg aaggtgacga tcaagatctc 3060 agtaacgagg agattacaat tgctagtgtc tttgcatcgg aggatgacga ggacagaaat 3120 tcgtcgaaca tattgaactt ggaggaagat atggacaacg agaaggagga gagcaagtcg 3180 agtactttaa gtattcaaca tggtaatgat cgtgaagtga tcgatgcgag tgcggttttg 3240 acggacaacc agctaaaaca gactggaaag cgcgcacaca gagacgaaac tcaatcagaa 3300 gaagagcgtg tggagcaaga agctgctaag gcgaaaccaa agaagacacg ccgcggactt 3360 ctagaggcta gcgaacgcag acgaccggtt tatcttaagg attatgtctt caatgctgtc 3420 caagctacct cacgagttct ggatcggaat aggaagccta tccgagggag tgatgccaaa 3480 atcccgcgga accgttgtga aatgctgcga tccaagtgga aggagttctt cctcatggca 3540 gagatggagg aaatggcagc acttaaggca aagggggtca tacgggagat tgccagtgaa 3600 gaggtgccaa atgaagccct tccgatcaag acgatgtggg tgtctgcggc gaagactgat 3660 caccaaggat tcgtgatccg gttcaaggcg cgtatagtgg ctttggggaa ttacgaacgt 3720 tctggtgtcg actttcgcga gacgtttgcc ccggtggcga ggatgtcgac attccggttg 3780 ctgttggcac tggctgcgaa gctcggtttg cacgtgtatg gtggtgatat taacacggca 3840 tacttgaacg cttggcttcg aattcgacag tatttgcgat ctattgatgg gcaccgatgt 3900 gaagttaatg ggcatatgta cgtcgttctc aaagcactct atggctgcgg cagtcaggaa 3960 gggattggaa ttcggaactg aaccagtggc ttcgtgagca tggctaccag cagtcactaa 4020 cggaaccatg cttatactac cgcttcgatg gggacacgat catgtatgtg cttgtctatg 4080 tcgacgacat atttgtcgcg accaacaacg agcagtgcaa gaagaacttg ttcgaggatc 4140 tggacagggc gtatggcatt aaggaccaag aacagctgaa ggaatatctc gggatcgagg 4200 tagatcagac ggcagaacat atcatgattc gacaaagcaa gtatgcgcgt gaaatcctgg 4260 aaaagtttgg atactctgag gtgcatgcag tcggaaatcc aatggaggtg aacgctcgcc 4320 tggcccccac taatgacgag gaagaggtga acaccgagtt cccgtacaga gaggccatag 4380 gaatgctcat gtacttaacg acaagtacga gaccagatct ggcacctgtg ctgagccagt 4440 tgagtcgctt tgtggcgcgt ccttcggcga aacatgtcgg aactgtgaag agagtactgc 4500 gctatctagc tggaacggtt gactatggaa ttatgtatac cagacaacaa caaacaagtg 4560 atgcagttca gttgcatgga ttttgtgata gtgattgggc aactgacccg gaggaaagga 4620 aaattactac cggatttgtg tacgaactgt cgggtggagc tattgcgtgg atgtcgtgcc 4680 ggcaatcggt catcgcgctg tccacggctg agtctgaata cgtggccgcg tgcgaggcga 4740 ccatggaagc tcttgccatg aggaacattt tgcaggagat tcttccgtac aactcgatca 4800 agttgcaact cggcattgac aatcagactg cgtacgtgat ggctacgaac ccacgtacag 4860 ccgtcgaact cggcatattg aattaagatg gcactatgtg cgcgagcaag tggagagagg 4920 agccatcaag ttgcacaagg tgaagagaga ggacaatacc gccgactcgt tcaccaaacc 4980 tttagagaag aaacgtctca agcgactgct gcagggcatt ggagttggcg ctgctgatta 5040 agtcgaagag tgatctccga gaagggcg 5068 // ID Copia-4_PSo-LTR repbase; DNA; PLN; 237 BP. XX AC AAQY01000038; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-4_PSo_; KW Copia-4_PSo-I; Copia-4_PSo-LTR. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-237 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000038; Positions 1040 1276. XX SQ Sequence 237 BP; 82 A; 47 C; 57 G; 51 T; 0 other; tgttgtgcca caatgtatag gcatctgtat acagtatatt gaagttaagt ataaaggcaa 60 agaggcaatc ttattggcta ctatggagcc aagcactgca gctacgaggg ccaaccaagt 120 aggaaagacg gcagcaaagc tcaagataca taaagccggg tgatgttcat gagggagatg 180 gctttgtcgc catcgtactt ccaaaactga cggcaaagaa caattcaata cacaaca 237 // ID Gypsy-47_PIT-I repbase; DNA; PLN; 5884 BP. XX AC AATU01003736; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-47_PIT_; KW Gypsy-47_PIT-LTR; Gypsy-47_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5884 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003736; Positions 36603 42486. XX CC Positions [3417-3932] - Integrase core CC 'GTATT' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 129..1511 FT /product="Gypsy-47_PIT-I_1p" FT /translation="MPIFTPVDAPRLVGTSHAELVKWLKDRRNYEETVRER FT CAAHGEDETKVMRSVKNSFEPTLLDVWCDLKLKTDKDTVTDEMLMEAIQEV FT VATLKNGLIPNIPAFFKKELKLDLTQSDVSERILQYFRLFRQLVEEEGLEG FT CFIGNEGAKEKCKLLVASIEPATLRDNIKSIIKYQNRAAGENERELFDLVV FT KMALEQDREYRSRKKPNISARQVEQDHRSKSTSAKHRRNGQDKEQVSSPSK FT LQRTNASSARDSKSGETKGPRDGCLKCGGAHYFSKCPDASEEEKKNLLRLH FT CGERKKDTGREVKRAKRIKDCLAEDDRSILINGKLRMPYCADSGSDNSIIG FT RSKAEELAKLNNRVILQPLKQPVLSKAVGDRIITARNVIEVRILIHSAAGP FT VTLTQRFRCLVIEDEEEEYPRSRHFAYPRNRRQPATGTTRPTDHHREMMTL FT SKWMTMRGLESSRARR" FT CDS join(3639..4565,4569..5732) FT /product="Gypsy-47_PIT-I_2p" FT /translation="MIWISDNGSHFRNEVIGNLCRWLKSKQEFTVAYCPWI FT NGTIERLNRDILKVFRTMLLDYKLDTKDWTALVPLVQANLNHTAVPSLGGR FT APVEMFTGLPCPSPLEVIFVDTEKGPKNIPVVNPSVMLEHQLLELRESVQE FT MHVRGKQLRWSLKLMEHRYVIEHIDGELNVWADLLSRWGGSRQPTSKILRV FT QTRSDRNQLQIRPLDDDQLQWPSLDDVLEAQRQHVRSLPAVQLIENERGLL FT RTNGRVWIPSRATELLRRVFIVAHCGAQGHRGRQSMELHLNRYCYVDNLRA FT SVDIFLSRCLLCLHTKGKVIPRPWGKTFRAENRNEALHWDFLYLGDSFGTS FT KYLLVLKDDCTHFSELVVCDSPTSTVAAEALLAWHSRYGIPMTWISDNGSH FT FRNEVIGDLCRWLKSKQEFTVAYCPWINGTIERLNRDILKVFRTMLLDYKL FT DTKDWTALVPLVQANLNHAAVPSLGGRAPVEMFTGLPCPSPLEVVFVDTEK FT GPKNIPVVNPSVMLEHQLLELRESVQEMHHQMKDQRAKQTLLNQKQRRGER FT LVDFSAGDYVLKSRVDEKVGNKLLVTWIGPFAITRADSHSFRVKNLLSGKE FT NDVHASRLKFYADNDLSVNEELLEHIASQGIVLKVNSIRDHRWNDRIKDYE FT LLMHWHGLEEIEDSWEPMQSMRKDVRLMVKTYAKQTHDNDFMAAVKSP" XX SQ Sequence 5884 BP; 1671 A; 1314 C; 1590 G; 1309 T; 0 other; aagtcgactt tagctgtcgg gaatcgacaa ctaaccatga caaggaaccc ggagccaaga 60 acgagggcag ctactgctgc agcagtaact gctgagagtc aagacttcaa ccaagaaaaa 120 aaattgcaat gccaatattc acgcccgtcg atgcgcctcg tctcgtaggc acgtcgcatg 180 cggaactagt gaaatggctg aaagaccgcc ggaactacga ggagactgtt cgggagcgct 240 gtgcggccca tggcgaagat gaaaccaagg taatgagaag tgttaagaac tcgttcgagc 300 caacactact agacgtctgg tgtgatctta agttgaagac ggacaaggac accgtcacgg 360 acgagatgct aatggaggcg atccaagaag tcgtagcgac gctaaagaat ggcctaatac 420 ccaacatacc ggcgttcttc aagaaggaat taaagctgga tctgactcaa tcggacgtga 480 gtgagagaat tctccagtac tttagactgt ttcgacaact tgtcgaggaa gaaggtctgg 540 agggttgttt tattgggaat gaaggagcga aagaaaagtg caagcttctc gtcgcttcga 600 ttgaaccagc cacccttcga gataacatca agtctatcat taagtaccag aatcgtgctg 660 ctggtgaaaa tgaaagggag cttttcgatt tggtagtgaa aatggcactg gagcaggaca 720 gggagtaccg cagtcgaaag aagcctaaca tttcggcacg ccaagtcgaa caagaccacc 780 gcagcaagtc caccagtgct aaacatagac gtaatggaca ggacaaagag caagtgtcca 840 gccctagtaa acttcagcgt acgaacgcat cttccgctag agactccaag tctggtgaaa 900 ccaagggccc acgtgatggc tgtctgaagt gtggcggagc tcattatttc tcgaagtgcc 960 cagacgctag cgaagaggag aaaaagaacc tacttcgctt gcactgtgga gagcgaaaga 1020 aagacactgg aagagaagtg aaaagagcca aacgcattaa ggattgtctt gcggaggacg 1080 acaggagtat tctcatcaat ggtaaattgc ggatgccgta ttgtgctgac tctggctcag 1140 acaatagtat tatcgggaga tccaaagcgg aggagcttgc caagttgaac aaccgtgtga 1200 tactacagcc actgaagcag ccagtactga gtaaagccgt tggcgatcgg attattactg 1260 cgaggaatgt gattgaggta cggattctta ttcacagtgc ggccggccct gtgacactga 1320 cgcagcgctt cagatgtctt gtgattgaag atgaggagga agaatatcct cggtcaagac 1380 attttgcgta cccacggaat cgacgtcaac cagcaactgg aacaactcgc ccaaccgatc 1440 atcacaggga aatgatgacc ctatcgaaat ggatgacgat gcgaggactc gaaagttcac 1500 gagcgcggag gtaaaggagg ccgtcgaaga aataattcaa cgagcattaa agtatggttt 1560 cccacccgaa ctagaggaca gactaagggt aatttgcttc atgtatgacg taaggggacc 1620 cggatcctcc tgcgagtgtt cctccacttc agattaagct aactgaaggc gcaaaaccgt 1680 accggtgcaa gccacggaag tacccgccac atctaagaaa atttctacaa gacttcaacg 1740 aggagcttgt gaaacttggg tgggtgttcg agaaccccaa tagccgctgg gcatgcccgg 1800 cagtaccagt caagaagcct ggctcagcgg aatacaggca gacgaacgac tatcgtcccg 1860 tgaacgcaat gacagaaccg ctggcgggtc taatgcccat tctccagctc ataacaaaac 1920 atgtgcgagg tatgaagcat tttggacgat tcgatttcat tcgtggattc tagcaattgc 1980 cactggagga ggcgtgtcgt gaaatcttat catacatgac tgataaaaaa aattacgccc 2040 ccatacgagt gcctcaagga tgcagtgatg cagcgctgta tttccagcgt acaatggaag 2100 attgctttca gaagcttttg tacaaacatc ttctggtgtg ggtagacgat ttacttctgt 2160 tcgcagctga tacagaaact tatttggaga aacttcaaga actactggaa ctgatggatt 2220 tcttcggtct gaagttaagt gcaaagaaga caagcctcta tcaaactacg gtgaagtggt 2280 gcggtaaact gatctctggt gagggcgtga ggcacgatcc ggagcgcatt gaagcactga 2340 ggcaggtgcc accaccgact acagcaggag aacttcaaca gttcttgtgt gctacaggat 2400 ggatgcgtga cagcattatt gattacgcag gaaccgcgaa acccctccag cagcttcttg 2460 atgccgcgtt ggagagcaag aaaaagacaa agcgaatcgc tgcggggatc tcactggtga 2520 tgagcgagaa ggagctccag gcattcaatg acttgaaggg cagtttgtgt aacgcagcga 2580 tgctagctca ccccaacgac gaggcaacca tttgtctatt cacagacgct tcagacattg 2640 gatggggagc tattgtaacc cagtgaggac tgggatgagg atagcagtat cgaatcaatc 2700 tcacgagcta ttgacatgca tgtggtggaa ctttctctgg tgcccagttg aactggagcg 2760 tcattgagaa cagaaggaat ctccgattgt ggtggcttgc gagaaattgg attacctatt 2820 gttgagacct caaggtttta aacctttccg ggctcaccgc aaatttaatt cacatcttcg 2880 caccgtccgt agagatgaag aagcacgtca gagggaaact gctgagatgg tcactaaagt 2940 taatggagca ccgctacgtc atcgagcaca ttgacggtga attgaacgta tgggcagatt 3000 taatatcgag gtggggaggt tctccacagc caactagcga gatcttccgt gtgcagaccc 3060 gtagcgaccg gaaccagttg cagatacgac cactagatga cgaccaacta cagtggcctt 3120 cgttggacga tgttttagaa gcgcaacggc agcatgtgcg ctctctacct gcagtccaat 3180 tggtcgagga tgaacaaggt ctactgagga ctaatggtag agtgtggatt ccatctcgag 3240 ctactgaact gttacgacga gtgttcattg tggctcattg tggagcacag gggcaccgcg 3300 gacgccaatc catggaactc catctcaacc gatactgtta tgtggacaat ttacgagctt 3360 cagtggataa atttctttct cgctgtctac tctgcctaca tacgaaaggg tagaaggtga 3420 taccaaggcc gtggggagaa acatttcgag cagagaacag aaatgaagct cttcactggg 3480 attttttgta cttgggtgat agctttggga ccagcaagta cctgctggta ctgaaagacg 3540 actgcaccca cttctcggag ctggtcgtct gtgattcacc gacaagtact gtagcagctg 3600 aagcactgct agcgtggcac agccgctatg gaatacccat gatctggatc agtgacaatg 3660 ggagtcattt caggaacgaa gtgattggga atttgtgtcg gtggctaaag agcaagcagg 3720 agtttacagt ggcatattgt ccttggatca acggaacgat tgagcgtctg aacagagaca 3780 tcttgaaggt gttcaggacg atgctactcg actacaagct ggacaccaag gattggacag 3840 cgttggtacc tcttgttcag gccaacctga atcacacagc tgtaccttca ctcggcggac 3900 gagcgccagt agagatgttc acaggcttgc catgcccatc accgcttgaa gttatattcg 3960 tggacactga aaaaggccca aagaacattc cggtggtgaa cccgagtgtt atgcttgaac 4020 atcaactact agagcttaga gagagtgttc aagagatgca cgtcagaggg aaacagctga 4080 gatggtcact aaagttaatg gagcaccgct acgtcatcga gcacattgac ggtgaattga 4140 acgtatgggc agatttatta tcgaggtggg gaggttctcg acagccaact agcaagatct 4200 tacgtgtgca gacccgtagc gaccggaacc agttgcagat acgaccacta gatgacgacc 4260 aactacagtg gccttcgttg gacgatgttt tagaagcaca acggcagcat gtgcgctctc 4320 tacctgcagt tcaattgatc gagaatgaac gaggtctact gaggactaat ggtagagtgt 4380 ggattccatc tcgagctact gaactgttac gacgagtgtt cattgtggct cattgtggag 4440 cacaggggca ccgcggacgc caatccatgg aactccatct caaccgatac tgttatgtgg 4500 acaatttacg agcttcagtg gatatatttc tttctcgctg tctactctgc ctacatacga 4560 aagggtagaa ggtgatacca aggccgtggg gaaaaacatt tcgagcagag aacagaaatg 4620 aagctcttca ctgggatttt ttgtacttgg gtgatagctt tgggaccagc aagtacctgc 4680 tggtactgaa agacgactgc acccactttt cggagctggt cgtttgtgat tcaccgacaa 4740 gtactgtagc agctgaagca ctgctagcgt ggcacagccg ctatggaata cccatgacct 4800 ggatcagtga caatgggagt catttcagga acgaagtgat tggggatttg tgtcggtggc 4860 taaagagcaa gcaggagttt acagtggcat attgtccttg gatcaacgga acgattgagc 4920 gtctgaacag agacatcttg aaggtgttca ggacgatgct actcgactac aagctggaca 4980 ccaaggattg gacagcgttg gtacctcttg ttcaggccaa cctgaatcac gcggctgtac 5040 cttcactcgg cggacgagcg ccagtagaga tgttcacagg cttgccatgc ccatcaccgc 5100 ttgaagttgt attcgtggac actgaaaaag gcccaaagaa cattccggtg gtgaacccga 5160 gtgttatgct tgagcatcaa ctactagagc ttagagagag tgttcaagag atgcaccacc 5220 agatgaaaga ccaacgtgca aagcagacac tgctgaacca gaaacaaagg cgtggtgaga 5280 gattggtcga cttctcagct ggtgactatg ttttaaagtc acgggtcgat gagaaggtag 5340 gcaacaagct gctggtaaca tggatcggac ccttcgctat cacacgcgcg gactcacatt 5400 cattccgtgt gaaaaatctc cttagtggaa aggagaatga cgtacacgca tcccgtctca 5460 aattctacgc ggacaacgac ctgagcgtca acgaggaact cttggaacac attgcatcac 5520 agggcatcgt actaaaggtg aacagcatcc gtgaccatcg ttggaatgac cggatcaaag 5580 actacgaact gctgatgcat tggcatggtt tagaggaaat tgaagattca tgggagccca 5640 tgcagtctat gcgcaaggat gtaaggctca tggtgaaaac ttacgcaaaa cagactcatg 5700 ataacgactt catggcagcc gtgaaatcgc cgtagctact tcgtgaccga cgagtgctgg 5760 cgaactacaa aacaaacacg ggccatccag aacatcgata gggagatgtt ccaaggccat 5820 tgaagtgttg aaacccgatt gtgatggact acatttggcg agattagcct cggggggggg 5880 gaac 5884 // ID Gypsy-48_PIT-I repbase; DNA; PLN; 4967 BP. XX AC AATU01003360; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-48_PIT_; KW Gypsy-48_PIT-LTR; Gypsy-48_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4967 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01003360; Positions 27868 22902. XX CC Positions [3644-4159] - Integrase core CC 'CATAG' target site duplication CC LTRs are 98% similar to each other. XX FH Key Location/Qualifiers FT CDS 893..4555 FT /product="Gypsy-48_PIT-I_1p" FT /translation="MYRRSSVSSPVHRIPKSVFIVAKSTNLSTAPRQPMPT FT KLQSEPKDVKNICRGKKTDSSSNDDAIKACRIRECLPPEGGTVLLEGVLSV FT PLCADSGATQSSMSERVFNRLKKVCPGVESVELENPIPCITVSGDVEVRKA FT VNVNVTLRTAAGPVSISSPVQCLIVPGELEEFLLGKEMLASLGIDVDRELE FT ILASQGQNDEVDEFDESEVSSRPELSDELNKLVRGLVEKAKQRNFPVDYLG FT ELERIATRFDTWRLTLGNDPPARVAPMRIRLKEDAKPYKCKARKYPPEVRK FT FMEDFNNKLEGLGWIYENPNSRWACPALPVRKPGTNEFRQTADYKPTNILI FT DGIVGVMPNPQVDLELVRGCQFFGLFDFIKGYWQIALDEACQEILSYMTHQ FT KIYTPRRVPQGSCDAALFFQATIEKCLQELLYKHLLVWIDDLLLYAVDVKT FT YLSKLERLFELLDYFGFKLSVSKSSLYESEVKWCGKIITGAGVSHDPERIK FT ALSTVPYPTNAGELQQFLCASNWMRESVVDFARAAKPLQEKLDQVLSTASK FT KTKRVASGIGIELSNSEREAFDGLKDKLVNAASLAFPDPEAVMCLITDASD FT IGFGIIVSQVRKWQTGKPVVEQQHELLVCVSGTFTGSQRNWSVIEKEAYPI FT ICACDRLSYLLLRPQGFRLFCDHRNLIYVFAPGKEVKKHIRGKLLRWAMKL FT TEYRYHIEHIDGTNNVWADMVSRWAGNHDNGVALRAMVLRKRRRGEEERTP FT VSRNKRRRGKEDRIPTMQAKRRGGEVDGTLTTRPVSTTSTIASNNAAKTAS FT RAVIRPFDDPNFTWPTLDEIIVAQEQHRSTVPADTLTRGNLGKGWYCKGRL FT WIPEAAEVFLQRLMIVAHCGAQGHRGRATMMEQLQRQFFVDHLRAKVDNFL FT TSCLLCQHVKGGKVVQRPWGETLRCHERNGVLHWDFLTVGESFGSDKYLLV FT LKDEATHYCDLVPCATPNSVVAVAAILDWHGRYGIPPVWVSDQGSHFKNAV FT VADVCKRLRCEQRFTVAYSPWINGSIERVNRDVIQVLRVLCLEYKKDIKDW FT TSFVPLLKASINHTPLPSLGNKAPVELFCALPLPSPLEFCVDPEQKRVVEM FT TKQPELISQKLEELRESIHKMHRAVEKERAKQTRRNKDKKVGARKANFSVG FT DFVLRSRVDQKHQDKLLITWVGPYQIVRADVHSFVVRHLVTGVETNVHASR FT LKYYAEQELWK" XX SQ Sequence 4967 BP; 1405 A; 1017 C; 1404 G; 1141 T; 0 other; aagatatctt tagttgcgaa ggtagtaact ttgagcggaa acaagaatca tgacgtcgag 60 tcagcaagct aaccaggaga gcgccgccaa ggtgcaaatc gaagacgatg caagtgtcag 120 cgttccggtg gtggtacagc catctgtacc acgagctccg cagccaattt tcgctatcgt 180 gaacgcgccg ttgatcaccg atgtgtcgcg tgaagccctg ttggattggc ttaagtttcg 240 gaaggagtac gtagccgtca cggaggcgag atgcaaggcc ggtaacgagg acgtgaaggc 300 tgttctgcgc tcagtgcgca attcgtttga tgagaaccta ttggagacta tgtgcgagac 360 acgttgggac gtggacctgg ataatttgac gaacgaattc ctcatgacca agattacgga 420 gataaccgcg agtttcaaga acagagagtt gcctgacatg gatgcgctct ttagtgcaga 480 actgaagttt gacatgtcac gctcggatat tgaaggtcgt gttactgcgt attttcatct 540 tgcgaatgag attatcaaac gcaacggtgt gaaagacctc ttcttgggcg aagaaggagt 600 caaacgcaag tgtaaggtgt tgatgaagtt cctgcctggg cctttaaaaa aaaggttaaa 660 aatgaactgg aatttcgcag cagtgaagca aaggcctcta tgagaaaatt atttgctttg 720 gtgaatgatt ttgctctgga actgcacagg gcagacgaat ctgcgaggca gatgaatgcc 780 agagctgcaa agcaaggcaa aagcttcagt acgaagaact ctacgaagtc gtttggtaaa 840 aagccagtga ttaccacgtt tggtgttacg gttggagcaa agcgaagcgc cgatgtaccg 900 ccgaagcagc gtaagttcgc ccgtccaccg aataccaaaa agtgttttca ttgtggcgaa 960 gagcacgaat ttatcaactg ccccacggca accgatgcct acaaagctgc aatccgagcc 1020 aaaagacgtg aagaatatct gtcgaggcaa aaagacggac agcagcagca acgatgacgc 1080 aattaaggcc tgtcgtattc gcgagtgtct tccaccagaa ggcggtacag tactgcttga 1140 aggtgtgttg agtgttccgc tctgtgcgga tagtggagcg acgcagtcaa gtatgagcga 1200 gcgagtgttt aatcggttga agaaggtgtg tccgggagtc gaaagtgtgg agttggagaa 1260 tcccattccg tgcattacgg tgagcggtga tgtggaggta aggaaagcag taaatgtgaa 1320 tgtcacgtta cgaacagcgg caggaccagt gtcgatcagc tctccggtac agtgtttgat 1380 tgtacccggt gaactcgaag aatttctcct tggtaaagag atgctggcct ctttgggcat 1440 tgacgttgac agagagttgg aaatactggc tagccaaggc cagaatgacg aagtagatga 1500 attcgatgaa tctgaagtga gctcgagacc agagttgagt gatgaactta acaaattggt 1560 gcgaggtttg gttgaaaaag ccaagcagcg taattttccg gtggattatc ttggagaatt 1620 ggagagaatc gcgacgaggt ttgatacttg gagattgacg ctgggaaacg accctcctgc 1680 tcgagtggca cctatgcgaa tacgactgaa agaggatgct aaaccttaca aatgtaaggc 1740 aaggaagtat ccgccggagg tcagaaagtt tatggaggat tttaacaaca aattggaggg 1800 acttggatgg atctacgaga atcctaatag tagatgggct tgtccagctc taccagttcg 1860 aaagcctggt actaacgagt ttcgacagac agcagattac aaaccaacaa atatcctgat 1920 tgatggtatt gtaggcgtca tgccaaaccc gcaagttgac ttggaattgg tgcgaggatg 1980 tcagttcttt gggttgtttg attttatcaa agggtactgg cagattgctt tggatgaagc 2040 ttgccaagaa atactctcct acatgaccca ccaaaagatc tacacgccaa gacgcgtacc 2100 acaagggagt tgcgatgcag ctttgttttt tcaagcaacg attgagaagt gcctacaaga 2160 actgttgtac aagcacttat tggtgtggat agatgacctg ctactctatg cagtcgatgt 2220 taagacgtat ctctcaaagc tggaaagatt gttcgagcta cttgattact ttggctttaa 2280 actgagtgtg tcgaagtcga gtctatacga atcggaggtt aagtggtgtg gtaagatcat 2340 taccggtgct ggtgtgagcc acgacccgga gcgtattaaa gcgttgagta ccgtaccgta 2400 tcctaccaat gctggtgagt tacagcaatt tctctgtgcg tccaactgga tgcgtgagag 2460 tgttgtggac ttcgccagag cagctaaacc actacaggaa aagctggatc aagtactttc 2520 tactgcatca aagaagacaa aacgtgtagc gtctggaatt ggcatagagt tgtcaaacag 2580 cgaacgagag gcgtttgatg gcttaaagga caagctagta aatgcagcaa gtctggcttt 2640 ccctgatcca gaggcagtga tgtgcctcat cactgacgca tccgatattg gcttcggcat 2700 cattgtgagt caagtgcgca agtggcagac tgggaaacct gtagtagaac aacagcatga 2760 gcttttggtg tgcgtaagcg gcacatttac gggttcgcaa cgcaactgga gtgtcatcga 2820 gaaagaagcg tacccaatca tttgtgcatg tgatcgactc agctatctgc ttttacgccc 2880 gcaaggcttc cggctatttt gcgatcaccg caatctaatc tacgtctttg cgccaggaaa 2940 ggaagtcaag aagcacatca ggggcaaact gttgcgttgg gcaatgaagt taacagaata 3000 ccgttaccac atcgagcata tcgacggaac caacaatgtg tgggctgata tggtgtcgag 3060 gtgggctggc aatcacgaca atggtgtagc tctgcgagct atggtgttac ggaaacgcag 3120 gcgaggagag gaagaaagga ctccggtaag ccggaataag cgtcgacgag gaaaggaaga 3180 taggatcccg acgatgcagg ccaagcgtcg aggaggggag gtagatggga ccctgacgac 3240 acgaccagtg agcactacat cgactatagc aagcaacaac gcagcaaaga ctgctagtag 3300 agcggtaata cgaccgtttg acgacccaaa cttcacgtgg ccaacacttg acgagattat 3360 tgtggctcaa gagcagcaca gaagtactgt accagcggat actttgactc ggggtaactt 3420 gggcaagggt tggtactgca aaggaagact gtggatccca gaagcagcgg aggtatttct 3480 ccagcgcctc atgatcgtag cacattgtgg tgcacaaggt catagaggac gagccactat 3540 gatggagcaa ctacaacgac agttttttgt ggatcattta cgagcaaaag tggataattt 3600 tttgacatca tgcctgttgt gtcagcatgt aaagggcggt aaagtggtgc agcgaccttg 3660 gggtgaaaca ctacgttgtc acgagcgaaa tggagttcta cactgggatt ttctcactgt 3720 aggtgaatca tttggcagtg acaaatatct acttgtactg aaggatgagg cgacacacta 3780 ctgtgacctg gtgccgtgtg cgacccccaa tagtgttgta gcggtggcgg ccatcctaga 3840 ctggcacggc cggtacggca ttccaccagt atgggtgagc gaccaaggta gccatttcaa 3900 gaatgcagtt gtagcagacg tatgcaaacg actaagatgc gaacaaaggt tcacggtggc 3960 ttacagcccc tggatcaatg gtagcatcga acgtgtgaac cgtgacgtga tccaagtgct 4020 cagagtactc tgtctagagt ataaaaagga cattaaggac tggacatctt ttgtaccgct 4080 gctaaaggca agtataaatc ataccccact gccgtcactt gggaacaagg ctcctgtgga 4140 gttattctgt gcgctgccgc taccgagccc actcgagttt tgtgtagacc cagagcagaa 4200 gcgagttgtg gagatgacta agcagcccga gttaatatcg caaaagctcg aggagctgcg 4260 agaaagtatt cataaaatgc atcgtgcagt ggaaaaagaa cgtgcgaagc aaacccgaag 4320 gaacaaagac aagaaggttg gtgcacggaa ggccaatttc agtgtgggtg actttgtgtt 4380 gaggtctaga gtagaccaga aacaccagga caagctgttg attacttggg ttgggccgta 4440 ccagattgtg cgtgcggatg tacactcatt tgtggtccga cacctcgtga ctggtgtaga 4500 aacaaacgtt cacgcgtcta gactaaagta ctacgcggaa caggaattat ggaagtgaac 4560 tgcagaaagt cagagagcca cctagcgtcc caaggaattg tactatcggt ggccgagctc 4620 aaagagcacc ggtggagccc caataggaag ggttacgaga tactggtgtc ttggaaagga 4680 ctagagccaa tcgaggactc atgggaaccg ctgtcatcat tgtggaagga tatcccaata 4740 acgatacgag cgtacgcaac aagcgccgct gacaacggtc tattgaagca tttaaatcgg 4800 agtgcaagat ttgctggaag tgcaacttga agttgcagag tgatggtcgg gagtgactgt 4860 tacgagctct catatattca gacaacattc aagcaacact caagaaacat ggttaggcat 4920 tgcgtgttca ggcaccatga aagagtggtc aaggcttgaa ggggcgg 4967 // ID Gypsy-61_PIT-LTR repbase; DNA; PLN; 156 BP. XX AC AATU01005792; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-61_PIT_; KW Gypsy-61_PIT-I; Gypsy-61_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-156 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01005792; Positions 95803 95958. XX SQ Sequence 156 BP; 54 A; 37 C; 29 G; 36 T; 0 other; tgttgcttgc tgtcgacgca ctgtcgtcaa aagcaagcac gttggccttt agaaaccaac 60 gcgatagcag ttaagaaacc actagaaacc cctagaaaaa gcagctagat aattcaattc 120 acttcatatt ttcacttcaa gtcaacagag ggaaca 156 // ID TDH2_LTR repbase; DNA; PLN; 376 BP. XX AC AJ439551; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Debaryomyces hansenii retrotransposon TDH2_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RNaseH; TDH2_LTR; gag; integrase; pol; KW protease; retrotransposon; reverse transcriptase. XX OS Debaryomyces hansenii OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Debaryomycetaceae; OC Debaryomyces. XX RN [1] RP 1-376 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439551; Positions 1 376. XX SQ Sequence 376 BP; 150 A; 59 C; 53 G; 114 T; 0 other; tgttggtttt gtgtcactat cagaatctat aaagattctg aaacaaatca ttgtaagaac 60 cataaatagt catgctagtg atactgatag tcataagagg atatgggaat aatcttaatg 120 agttgaaacg aaacaagaat ataaattagg aatgaatctc caagaagaag atgaattttc 180 taattaacga acagcaatta agcagaatat acttaattaa gactacccta aaaagtcatc 240 gataggtaga tcgatcactt aactacttct atagtaacca atattgatat ataagaccag 300 tatatctata atactaatac ataagtattc ttccctacat atttcaggta ttcacacgac 360 ctttatcata atccca 376 // ID CEN1_SP repbase; DNA; PLN; 753 BP. XX AC X13763; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Yeast centromere CEN1 repetitive DNA PSS163, part of dgIa. XX KW CEN1_SP; centromere; SPCEN1; Repetitive sequence. XX OS Schizosaccharomyces pombe OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; OC Schizosaccharomycetes; Schizosaccharomycetales; OC Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-753 RA Yanagida M.; RT "CEN1_SP."; RL Direct Submission to Genbank (15-DEC-1988)Yanagida M., Department RL of Biophysics, Faculty of Science, Kyoto University, RL Kitashirakawa , Sakyo ku, Kyoto 606, Japan.. XX RN [2] RP 1-753 RA Chikashige Y., Kinsohita N., Nakaseko Y., Matsumoto T., Niwa O. RA and Yanagida M.; RT "Direct submission."; RL Unpublished. XX DR GenBank; X13763; Positions 661 1413. XX SQ Sequence 753 BP; 226 A; 137 C; 124 G; 266 T; 0 other; tccgcagttg ggagtacatc attcctactt cgatatactt ttgaaagaga aaaatgaacc 60 gattggaatt gtttcgacaa cacgaatttt acttctaggt catatattta tggcgatgcc 120 aaacaacaat attgttgaga cagtaagtta agcaaatggc taaataaatc caagattgtt 180 gttgagtgct gtggatctca atattatcag tatctactct tctcgatgat cctgtaaatt 240 tttgttatct tttttttatt tgcagttact gataatacta gcattttgca tgcttttttt 300 tatttggatg ttcttccaat tgatcaatac agtaacttta gaactatcat cgctatgcct 360 ttaaatgacc gcactaaaag catggtacca aagctcgaac atagaaagaa atccagaaag 420 ggatttaaag attgactttt tcgacaaact tcatgttaca agtcttatcg tttgtgttta 480 taaatcatca gcctctctct atatctctat atctctatat atcagatata aagatgcgag 540 ttttgaagta gacattccgc acaaagtcta gtacaccatg tctcttgtgc tcaggtggtt 600 gtcctgcaaa aatgtacaac aggcaaatgg atgtttcatc aaagatggac tcctttgcct 660 catacttatt gatggcgaag ctagatccgt tatcatcttg agaaaacaca tcatcgtcgt 720 actacatttt ttttcttact cattgcttgt tta 753 // ID TKM1_I repbase; DNA; PLN; 5224 BP. XX AC AJ439546; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Kluyveromyces marxianus retrotransposon TKM1_I, internal region. XX KW LTR Retrotransposon; Transposable Element; RNaseH; TKM1_I; gag; KW integrase; internal region; pol; protease; reverse transcriptase; KW internal portion. XX OS Kluyveromyces marxianus OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; OC Saccharomycetes; Saccharomycetales; Saccharomycetaceae; OC Kluyveromyces. XX RN [1] RP 1-5224 RA Neuveglise C., Feldmann H., Bon E., Gaillardin C. RA and Casaregola S.; RT "Genomic evolution of the long terminal repeat retrotransposons RT in hemiascomycetous yeasts."; RL Genome Res 12(6), 930-943 (2002). XX DR Genbank; AJ439546; Positions 386 5609. XX SQ Sequence 5224 BP; 1846 A; 1222 C; 1063 G; 1093 T; 0 other; tggtagcgcc gctaagacac ctattgtccc ctcagacaat caggcaagtc cagaggaatc 60 aggtagcatc gatgtcgagc ataaggccaa tgccgacgac gaagcatccg gatcccacga 120 aggtcatcat gaaaattttt caaaggattc aacaaaaacc ggaactccac aggacaccct 180 acacaaagag cctgtggacg gttctcccgt tccaaattac gcccaacaaa gctggtacta 240 ccatacacag ccaccgccac agttttatcc atctccatac gctaattatg ggcctggtcc 300 ttacactcct ccgtgggcca acatgaatat gcccatccca ggagctaaca cgaacccaga 360 taaaactgga ggacattatc aaacaacggg tccatctggg gacagctccc aatacaaccc 420 tgcgtactac ttcccgtacc aattggaacc aaaaccaggg ttgcaaagcc aaacaacgac 480 cgaatgtact ttcggccaat tgcacaatcc cagaaaaaca ttcattctgt caaaggtaaa 540 ctcacctcac tattacgaca gctgggtaag agaaatgtgc caggcaatgc tcgagcaaaa 600 cttgggccac ctcattccaa cagaggataa caaaacccca gaaaccccag aacctgcaga 660 gaagaggtac atagaagaaa tccatatagc atgtgtgcct gaagaaaaat acccaaagtg 720 gttaaagtcg agttacgacg aaggtgaagc actaattgac tgcttcaagg aaggaattag 780 aagaataaag gcggaagaag atcctgaggc aatcgtgtta gccctagctg gactaacact 840 agactacaga gagtctattc ccaacttcgc caagagatta aggaaaatcc accagagaac 900 ggtaaacgca aaattcccca tggcagaaaa gatcgtcatt tccagagcac taaaggctct 960 accagaacga tacgagaaag ttgacatcaa cttcaccaaa tcaaacgatc agagcttcaa 1020 taacttcata aacatcctcc taacaacgga gccaaggatg aaaagctcaa atcaatatga 1080 taatcaacgg ttttacacca attccgaaag gaagcaggtg gacagacgtc caaacagaaa 1140 aaccgtacaa cacattggat caaaaaccgt agagggggat cttaggcctg actcagaggt 1200 ccaggaagaa taattcccca gtcgatcccc agagagactt tatgcttgat ggtggagcaa 1260 cagtctctgt gatatatgac aaaaagttaa tccacaattt tacatctgaa tctaatcaaa 1320 ttcttgtcga cgttcaacaa aacgaagtcg ccgtgaaagg tgagggtaac ttagaactca 1380 agtttaaggg caaacgaatt tccctacccg ccatatatgc accatcaaca cacaccaata 1440 tcatcagtgt agaagatcta acaaaatcac aggcgtatct agatctaaga aggaactgcc 1500 tgctatccaa gaacgggaaa accatcgctc cgacccacaa gttcgcgggc ctaaggtggt 1560 tatctcgcaa aaatgctata gaactaccaa accagactca atcagtctat gcaatcacac 1620 ccagatcggt aagatctgcg ccagacaagt tctctctgac aagcatccac aacatgtttg 1680 gacatatgaa tatcaattac atccgagaat cattcagaaa aggcttaatt caaggtgtga 1740 aagaagacga tgtagactgg acaggagtca gctcattcca atgccaacac tgtatggaag 1800 gaaaagccaa acgtaataac cattacgtga acgctagaaa agattatacg aaggaatatc 1860 ttcctttcga atacttgcat accgacgttt ttggaccagt aagagtacaa agaacccgta 1920 ctactccaag gtacttcatt gcattcatag acgaggtcac aaaatacata tggaccttcc 1980 cgttactaca taaaacagca gaagaagtag ccccgacatt caaggaagtc gtcatgctga 2040 tttatacaca gttcaacacg agagtgaaaa ccatccagat ggacaaagga tcggaatacc 2100 tgaacactaa ggtacagaaa ttcctaaggg aaagaggaat tgtttcgaga gaaacaaccg 2160 ttgctgattc aaaagcaaat ggagccatag aaagacagca ctatacactt ttgaatgact 2220 gtagaacatt cttgagacaa gctaacctac gccctagatt gtggtatcat gccgtcgtat 2280 actctacagt aatgaggaat tctctcctca atagaagtat aggaacgtcc ccgagaaaca 2340 gggcggggat gtcgggactg tcattcagag acattcttcc cttcggacaa cccgtgattg 2400 tccacttacc caacccaaaa tcgaaattac aagctcgagg agtcctaggc tatgccctcc 2460 atccatccac tagatcatac gggtacatca tagtcgtagg gaagaagaag aaaataccta 2520 tcgacactcg aaactatcgg gtcctgaact acccaccagg tgcaacaatc tcagaagacg 2580 aggtgcagta catgatcgac cgtatggaaa ataacgacgc agaatctcaa gacgatatag 2640 agtcgaactt tgaaccaaat tatacggata tggagcaacc cattcaccac acagcggact 2700 atttcccgaa tacaaccgcc tcaaacatcg agacagacca atacaataat gatagctttg 2760 gtctgcatta cgggggtgat tccgtaccgc ccgagtcgtc cagtagcgag gacgaactgt 2820 tccccacaga cgaatcagaa aacgattcag actcatcgga ccaatcattc aatgatgatg 2880 gagaccccat gtcccctcca tattccgggg gtgaggaaca gatagtacca acaccagccc 2940 cgattagacg cgttccacca atggaaccac catctcctgt cgaggactct cccccacctt 3000 tatctgggac agacctcgac gacttatttg gagaatctaa cataaataat tacatcccag 3060 aagatacaga tctactggca ctaaaccatg aatctgttcc ggaacccgat accgtggtac 3120 cagaaacaac gaacattgaa caagacaata ttctaccatt agtaactaac gaaaactcta 3180 atcctccaaa cgatagctct gaccagtccg gcgacgagtc aggcgaagaa tccggcgaag 3240 agtcagtcga caacagactc aagtccatac ctattttcaa tggaaacaag cacaaagatg 3300 caagaactgc tgaagcagat ttggattctt tgtacggggg tggagataat acagaaaata 3360 acaatggacc aactttagaa gaggtgttca gatcgatcga agaagatcca ttcatgctaa 3420 cacagaaaag accgagatca cgtgcccgct atcgcgaatc taaccaagac agttgcgatt 3480 ccgggggtga ctacgaatca ggttcagact cagacgggtc atctgacgag tcacctcaga 3540 agggaagaaa aatacaacgt gtgaactatg ttaacgcggt cctaaaacca gtgaatgtaa 3600 taccacttaa tatgtcctta aactactcgc aggcaatatc tcggaacaga aacgaagaag 3660 agaaggatgc tttccagaag gcataccaga aagaaatagc acagctaacc aaaatgaaca 3720 cttggaacga agaattaata gatgcctcaa ctcttcctaa gaagaagatc ctaaactcaa 3780 tgttcatttt caccactaaa agagataatt ccaagaagtg cagactagtt gctagaggag 3840 accaacaagc cgcagacacg tatgacacgg aattaaaggc aaatacagtg gacaacctag 3900 ctctcatgac agtcttagca ctaacactag actacaacct aacagcgttc cagctcgata 3960 tctcatcggc ctacctctac gcagacctta aggaagaact gtatatcaga gctcctccac 4020 acatgaatgc taaaaacaag gtactaagac taaataaatc actctatgga ctaaaacaga 4080 gtggagcaaa ttggtacgaa ctaatcagat cgttcctaat taagaaatgt gacctgattg 4140 aagatagaat gtggaaatgt gtttttagag acaaagaacc gctgaaactt attatatgtc 4200 tgtttgtcga tgacatgctg gttgtaggaa acgacgtcaa gtatatcaag aaattcatat 4260 caaagctatc taagagattt gatacaaaga ttgtaaatga tggttcacac aggccagaag 4320 atggagtaaa cgagtatgac attttgggca tagaattaga gtataagaaa aaagaataca 4380 tgaagttcgg aatgcagaag tctctagagg acaagctgcc acaactggga atacccctac 4440 tcccaaacgc taaaatcagg aaggttccgg gggtgcctgg agactacatc ttctcaggaa 4500 aggaactgac attaaacgaa agagaatata aaagcaaagt taaacacctg caaagaattg 4560 taggactagc gtcctacgta ggacataagt tccggtttga catcttgtac tacgtgaaca 4620 tcttagcaca acatcaactg tatcccagcg ccaaggtcct agacagggct gcacaattat 4680 gccaatactt gtgggataca agagataaga aactagtttg gcattattct ggtcccaagg 4740 aaaacaacgt taccgctgta tcagatgcag catttgcagg gaaccaagat tttaaatcac 4800 aatcaggaac tctttacctg agaaacaaca agcccatagc agccaaatca agaaaaatca 4860 agttaacttg tatctcgtcc acagaagccg agatatacgc aatcagtgaa agcctgccaa 4920 tactacgtgg gttagaacac ctagtaaaca agttacaaga cataaaagca acagtaaagg 4980 ttaaaacaga cagtcaacca tcaatggcaa taataaacgg cacggatgac tcagcatgcc 5040 tcaagaaaca cattggtagt agggcaatga ggataagaga tgagtgcgat gatctcggac 5100 ttacactcga atatatcccc acaaaagaaa acaatgctga cgttttaacc aaacccctat 5160 ccgtgaagct attcaaactt ctcacagagg actggataca atagctttct cctagtaggg 5220 ggtg 5224 // ID Copia-42_PIT-LTR repbase; DNA; PLN; 174 BP. XX AC AATU01002779; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-42_PIT_; KW Copia-42_PIT-I; Copia-42_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-174 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002779; Positions 43678 43851. XX SQ Sequence 174 BP; 50 A; 40 C; 33 G; 51 T; 0 other; tgttggaaca tccagcttga acacgtttag atggatgtgc ttcggcttct gagagagtga 60 ggttactaga atggatagat gacagtgctc ctaggactta agccctcatg aataataatc 120 acttcctcat ttcccttaac atccacaaac accttttatc caagtgttcc aaca 174 // ID Gypsy-11_PR-LTR repbase; DNA; PLN; 303 BP. XX AC AAQX01003596; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-11_PR_; KW Gypsy-11_PR-I; Gypsy-11_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-303 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01003596; Positions 209 511. XX SQ Sequence 303 BP; 65 A; 72 C; 96 G; 70 T; 0 other; tgtcgccgga ttacggcctt cgttcaagct acgatggcgc cggagcataa tcgaacagtg 60 cttggttgat gacagagttg gtgaggcgca tgccacgggc ctatgaaggt cgcgtggtga 120 cggcagggac gatgaggcgt gtcgtgtacg gtgctattgg cctcaatgca cgtggcacaa 180 tgcgtttgtg ggcggaggca cgcgcccaac tgcatgaagg cgagcaggcc gcaggtttta 240 catgatagct tttcccatta ataaattttc ctctttggaa aacaaccccg ggtattcgcg 300 aca 303 // ID Gypsy-20_PR-LTR repbase; DNA; PLN; 242 BP. XX AC AAQX01002724; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora ramorum genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-20_PR_; KW Gypsy-20_PR-I; Gypsy-20_PR-LTR. XX OS Phytophthora ramorum OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-242 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora ramorum genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQX01002724; Positions 899 658. XX SQ Sequence 242 BP; 59 A; 62 C; 78 G; 43 T; 0 other; tgatccgccg gctgctccag cggaaccctc cttctggctc tcggaggcta caggtcttta 60 cacgactgac caggcaagac acgacgactc gaccaggttg gcgaccgcgc cgaggtacgt 120 aaaggggagg aggtctaggt agggcagcga gcagagagag agccgagcta gcaagaggct 180 aaccggaatc gaactcagtt ttgaatttgc tcggtagaga gctttccgtt ggaaacggat 240 ca 242 // ID PUNTRIP_NC repbase; DNA; PLN; 1874 BP. XX AC AF181821; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Neurospora crassa DNA transposon PUNTRIP_NC. XX KW DNA transposon; Transposable Element; PUNTRIP_NC. XX OS Neurospora crassa OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; OC Neurospora. XX RN [1] RP 1-1874 RA Margolin S.B., Garrett-Engele W.P., Stevens N.J., Fritz Y.D., RA Garrett-Engele C., Metzenberg L.R. and Selker U.E.; RT "A methylated Neurospora 5S rRNA pseudogene contains a RT transposable element inactivated by repeat-induced point RT mutation."; RL Genetics 149(4), 1787-1797 (1998). XX DR Genbank; AF181821; Positions 74 1947. XX CC 44bp terminal inverted repeats. XX SQ Sequence 1874 BP; 630 A; 350 C; 287 G; 607 T; 0 other; tagacgtgct aaccccaacc ccggtcacgc cccaccctcg gtcatataac ttcatcacca 60 ggaatcaaat aacattgcaa actagccact tttacaggga ttttaatact tcaaaatgtc 120 ataattttat tcctaatact cttcaataat ataaaggatt ggctggaggg ctctccccaa 180 ctcttaaagc agtctcatcg tcgtcgttac cgtagcaacc cttctgcgct taggaccctc 240 ctttaaagca tcacaaactt ctattatcta ttctatctgt acaaatttat cgttaccaat 300 ctctttaacc ttccttttac ctctaggctt ctataactcc aattaaatct ataaatatta 360 aatttagtaa tccttagtag cgaacttaat gttcttaata ttaagggcct tggctgcctt 420 agtgaaaaca gtcctaatat tacggtcgat agaggagaaa ttgtaaatac ctcccaatat 480 atccctagac ctctaaggaa ttggaaaaat aatgtttcct atcgaaataa gttcgtttag 540 tagtattcta ggtagtaaag gctcggctag caaggcattg ttattaataa ctaccgcggg 600 atcgtcaata ataatagatt tatttactag ctatattcct atttttctaa accctaatct 660 aaggtttcta atacttaccc cccttcttaa aacttcctaa taatacttaa ggaaccgtta 720 tttatttact aatacaaata ttagaaaatt agcgaaatcc ctaattaaat ctctaaaata 780 agatttaata attgaaaaaa taaagtggtt aagcggttaa gttcttatag gaagtataag 840 aaggtaaaaa aagtaattaa atattgtatt aaaattactt caataaggaa gtcgttaatt 900 atataattaa tatacttatc gaagattaaa agacgctaac tatcgtcgat tagcttcatt 960 tctaatagat aaacctcctt caactataat agtacaattt ctaaattgct ctatctacta 1020 gcaatactaa tatacttcca actcttaagt tcgtagtcca tatcaaagaa ccattatcct 1080 tagaggttaa taccaaaaaa aataacaacg ggaatcaatc tcttaccctc aatagtacca 1140 aacttaataa tagttaccca aattgttata tcggtcgtta ttaaatatac tttcttcgtc 1200 aaaatagtcc caaggacttt accgtctatt aattttaatt cttaaagatt atatttattt 1260 atattagata tattagtagg aataataccc ttatcgcgaa tctaaacttc caaaaagtcg 1320 aagaattttg taaaggcttc cttaatagac cccctaactc taactaactc aaaggggctc 1380 gaaatcttta ttataacaat tagatttctt tttataaaac agtctaccca atgcgccccc 1440 aacttattat aattgcctcc tctttttaat atcgctatta taaagccaac atatttaacg 1500 acggttaaga gcccaactaa ctttctcttt atttaatatc catttgtata agaaggattc 1560 ttaggcgggg gacagccgtt attagggtat tttaattata cgaagggagg aggtgcctcg 1620 tatacggtcg gagatagtag attatagtac gctatacttc ttagttacta tacgctagga 1680 aagtccgttg cggaccttag atatcgctta gtcgagtaaa gacgaagcta ttgcgaccgg 1740 aatcaatcaa atcgatagta ttttagtaga gttattgtta ttaaaagatc gagagtatga 1800 aagtgtatag gagaaatggc ggtgtgggga tgtgaccgag ggtggggcgt aaccggggtt 1860 ggggtcgcga cgta 1874 // ID Gypsy-54_PIT-LTR repbase; DNA; PLN; 299 BP. XX AC AATU01004924; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-54_PIT_; KW Gypsy-54_PIT-I; Gypsy-54_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-299 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01004924; Positions 167896 168194. XX SQ Sequence 299 BP; 73 A; 85 C; 89 G; 52 T; 0 other; tggcacacca agtatcagac gacattgcct gaacagactc agcgaatacc gagaggaggc 60 gcgtaccccg atgactcgtg tttcgctctc gcgtgcctcc aagacacatc ggcagcgcga 120 ctggcgacag tgagctggcg gcacacgccg gcgaccagga gtagccggtg gcacgcggct 180 actgaagcag cagcaggaag ggcaggtact gctgccgcag gagctcatag atagggatag 240 tttgaggact ctttgactaa tctcacctcg caacttgcta tacagcgcgc aatatgtca 299 // ID Copia-26_PIT-LTR repbase; DNA; PLN; 228 BP. XX AC AATU01002204; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-26_PIT_; KW Copia-26_PIT-I; Copia-26_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-228 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01002204; Positions 93514 93741. XX SQ Sequence 228 BP; 57 A; 48 C; 62 G; 61 T; 0 other; tgttggattc catatcgaag acccgatgtc gaagctgagt tcaatgtgag acctggtcaa 60 cgggggttgg accaagtcgc tgagaagcag agagacgtgg gcttctgcat gagagaggac 120 acaggtcctt tactggttgt gagagtttgg tgacagaact taagcaacta atttattcac 180 ttctactttt ccttcctgtc cggtcagaca gatcgagtgc aacttcca 228 // ID Copia-3_ES-LTR repbase; DNA; PLN; 475 BP. XX AC CABU01003056; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-3_ES_; KW Copia-3_ES-I; Copia-3_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-475 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01003056; Positions 12828 13302. XX SQ Sequence 475 BP; 137 A; 111 C; 113 G; 114 T; 0 other; tgttgaaata cagcgcatca ctgctgtagg atgtgtgtag tagaatagat gcagctgtat 60 gattgctgta tgcaatgata cgtacatgcg gtgtgatatg tgacgtttgg taaaacgtaa 120 catgtatgac gagttctagc gaggaactca cgaatgaatt gattgatggt tgagcagagg 180 attgtaattg tagcgagatc acgaggtgtt gcgagcccca ccgggttcac ctcccaacta 240 tccctcaaca tctcacctct gcaagtacgc tgaagaagaa agaaagtaca agtcccaaaa 300 gcggcatcta gaaacaacat cgacttcggt cactgtctca acagacttcg gtctacacgg 360 acttcggtct gcacatcaca cagactactg tctggaactg cgcatagata taggcttaac 420 cgcctgcaga cacgaccctt gggtacaggg cacctcgaca ctacacattt ctaca 475 // ID Copia-15_PIT-I repbase; DNA; PLN; 4648 BP. XX AC AATU01000194; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Copia; LTR Retrotransposon; Transposable Element; Copia-15_PIT_; KW Copia-15_PIT-LTR; Copia-15_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-4648 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000194; Positions 63664 59017. XX CC Positions [2006-2446] - Integrase core CC 'CTCTT' target site duplication CC LTRs are 97% similar to each other. XX FH Key Location/Qualifiers FT CDS 860..2446 FT /product="Copia-15_PIT-I_2p" FT /translation="MWWAQLPTLQNVMARMLEAFKTNITPAQAMKLFTASK FT DAKRNWSEHHMYLVAISGACGGGADYLALNNIVQFASPELRTVLMAKVDAR FT RTDYLQQAEELALFAQAWELDPVRHRSLGKELVGAVGEARGRETRKCHECG FT RVGHLRAACPERGRGGDAEPDLTLAVRKDTAATEEMWILDSGSSRHLVSDE FT SWLDEVEECEDVCVQPNGEPLRIRKKGTLTLRVSACGAEQTLKLTDVYYAE FT GVVHNLISYGKLDEKGFTLTYKSEQRVVAAKNGQRVAFDVELRRNVLIVCG FT SVKKKRELASDVIMAALTEVVAATDGETSNVQKGTLVEFHRRLGHLNYDAV FT ERLAREPSSGTELTDRRRVNCLICAEGKQTKNRQSSKDSGEHAPTDRVGGV FT ICSDLKGPMTPKDRLGNRYMINFVDHKSNYCGVFLAKTKDVAARKFEEFLV FT YFEKRFDCRIHVLRTDSGGECENVDLFCKRTGVARQRSEARNQASNGKAKR FT MHRTIMNMARCMVFACGLPLSFWGVLLDTRRTF" FT CDS 3574..4602 FT /product="Copia-15_PIT-I_1p" FT /translation="MCVYYRRHGREVLVVGVYVDDLLVTGTGQEVVDAIFA FT EFADLSIKNLGEARKFLGMRVVYDESYGYDLDQEITITEMLNEFGMGMAHG FT ARMPIGLEWSDGCDIELEKLPISGESAVATVKKFQSLVGSLLGVARCTRPD FT IAFAVHKASRRTHESTVTDWKLAKRVLRYLAGTRQLRLRMKGDRGRMEPLE FT VVGYSDADFAADKGDRKSVTGGLVTVDGMPISWVCKKQTGVSLFTMEAEYT FT AASVMAQELLGVREVLKELEIAFMEPMPLRVNNQAALKQLEDEGASSKANH FT VDVRIKFVGHFTKEGVLGPEYRESKRMPADILTKALPAPRLDELRAQVGLH FT " XX SQ Sequence 4648 BP; 1176 A; 1072 C; 1525 G; 875 T; 0 other; ggttttgagc ccgatgaacg atgccataga tgaggtcgct cgcgacgtcg caccagcgtc 60 aacgccagca cccgctaccg gtcgcgaaag gatcggtatg gccgaagaga tagaagagaa 120 gagcaccacc gtcactcacg aaaggggtga cggtaccaat accaacggcc aaggccaagc 180 cgtcggtaat gaccaagcat cagagatgtt ggagatcatg cgcggtctcg ctgggagact 240 caagaagctc aaagagtccc agacgaagat cgaaagaagg ttgggtgacg gagagaagcg 300 cgcgcgcacc gccgacccac tcatgacgcc gccgatgaac tcgagtttgt tcgcatcggg 360 gttaggtcgt gtgacacgta tgcacatcga ctcgctggcg ggatccccag agaccccgct 420 cacgacagca ccacgccgac cggcgccgcc accgcagtat ttcgggcagc accaggtggg 480 ttacggtgta ccactctctg atctacagcg gctatttgcc gcagcgcaag gcggccaagg 540 tgatcgacct ggaccagggc cccagcagcc acaagatgca cgagtgcaag atggtgctgg 600 cggctatcca gtgcagcaag ggacgcctgc acggtatcca gatgctcgat agaaggagtt 660 gtcgatacgc ccattcgatg gaaaataatt gtacgttggg ctaggctcgg gtttcctgga 720 gtggggccgc cgtttcgagc gccaagtaca gcttgcgcag tcagcctgtg ggttctggtg 780 gtctgaggac gtgaaggtgg acctgttggg acactacctg tccggaaccg cggagcggta 840 ctacaagaag caagtggaca tgtggtgggc gcaactaccc acactgcaaa atgttatggc 900 acgtatgctg gaagcattta agacgaatat cacgcctgcg caggcgatga agctcttcac 960 tgcatcaaag gatgctaaac gcaactggtc ggagcaccac atgtacctcg tagccatatc 1020 cggagcgtgc ggcggcggag ctgactatct tgcacttaat aatatagtgc agttcgcgtc 1080 tcctgagtta cggacggtac taatggccaa ggtcgacgcg aggaggacgg actatctgca 1140 gcaggccgaa gaactggctc ttttcgcgca ggcctgggag ttagatccgg taaggcaccg 1200 gagccttgga aaagagctgg tgggagcagt tggcgaagcg cgtggtagag aaacgcgtaa 1260 atgccacgag tgtggccgag ttggacacct gcgcgcagcg tgcccggagc gtgggcgagg 1320 tggcgacgcg gaaccggatt tgacccttgc cgtaaggaaa gacacggctg cgaccgagga 1380 aatgtggatc ctggacagtg gatctagtag acatctagtc agtgacgagt cctggctgga 1440 cgaagtggag gagtgcgagg acgtgtgtgt gcagcccaac ggtgagccgc tgcgcataag 1500 aaagaagggc acattgacac tcagagtctc ggcatgcggt gccgagcaga cactcaagct 1560 tacggacgtg tactacgccg agggcgtcgt acataatttg atatcgtacg gaaaattaga 1620 cgaaaaaggt ttcacactga cctataagag cgagcaacgc gtcgtggccg ctaagaatgg 1680 acagcgtgtg gcttttgacg ttgagctacg acggaacgtg ctgattgtgt gcggatcggt 1740 aaagaagaag cgcgaactcg cgtcagacgt gatcatggcc gcgctcactg aggtggtggc 1800 ggcgaccgac ggcgagacga gcaatgtgca gaagggcacg ctggtcgagt ttcatcgacg 1860 tctcgggcac ctgaactatg atgccgtgga gcggttggca cgcgagccaa gctccggcac 1920 cgaactgacc gatcgacgga gagtaaactg tctgatctgt gccgagggca agcagacgaa 1980 gaacagacaa tcgagcaagg actctggtga gcatgctccc acagatcgtg tgggaggcgt 2040 gatctgttcc gaccttaaag gacccatgac cccgaaagat cgcctgggta acagatatat 2100 gataaacttt gtcgatcaca agtcgaacta ttgtggggtg tttctcgcca agacgaagga 2160 tgtagcggca agaaagttcg aggagttcct cgtctacttc gagaaacggt tcgactgcag 2220 gattcacgtc ttacgaacgg attccggagg tgagtgcgaa aacgtagatt tgttttgcaa 2280 gagaactggt gtcgcacgac agcgcagcga ggcgcgaaac caagcaagca acggaaaggc 2340 taagaggatg caccggacca ttatgaatat ggccaggtgc atggtgtttg cctgcgggct 2400 ccctctcagt ttctggggag tgctgttaga tacgcggcgt acattttgaa ccggtccccg 2460 accagctcca acccagggcg tgcgtcgccg attaaagtac tgacgaagca gacgccgccg 2520 ctaggggaga tagttgtttt cgggtcccca tgtactgttt acaggggccc gcggaaacaa 2580 aactttgcac agagagcgca ggcaggcatg attgtcggaa tcggagagga aacgaagggc 2640 tacagagttt acttgccaaa ggacaaggtc gtgatcgtga cacaacacgt gaagaacata 2700 gagacgctca acaaagagca gaacgagaaa gtgcagcgac tgtacctgca ggacgacgag 2760 gacgtacctc aggaggagtc ggaagctgct aagaagacgc ccgagggcgg tgtggcacct 2820 gccgaggcag ggaatgcgag tgggagcact aagaagcgct ccaaaaggaa gaagaagaac 2880 tgaactaggg atcgcccagt tacgcggtcc gtagttcaac ggtcaggagg agtcggctca 2940 gacctgggag gtcaggagga gactccgccc gacgtggtga gcagtttagt ggagccggac 3000 ccaaggagct accgagaggc aatgaagagt cgacaccggt cgcggtggct gagggccatc 3060 gcggaggagc tgcaggctct cgaacagaat ggtgtgtgga aggtggtgaa gctcccgcgt 3120 ggagcatacg cattgcacgg aaaatgggta ttcaagacta aactggatgc ggaaggtgcg 3180 atggagcggc tgaaggctcg cttagtggcg tgtggaaacg aacagatctt tggcgtcaat 3240 tttagcgtta catttgctgc ggtgatggac atgagcagcg ttaagttgat tctcgtgttg 3300 gccagaaagt ggggcgtgcc tgccaaacat ggcgacgtcc ccaacgcgta cgttaaggct 3360 gataaagagg ctgatttgga caattacatg aagattccca agggaatgga gatctcggac 3420 gagatgaaga ggtaactggg tgtttgacat ggagacgagg tggtactcga gctgaagaaa 3480 gcacatttcg gtttgaaaca agctgggcga ctctggagcg agctcctgca ccgcaagcta 3540 aaagggattg gtttcataca aagcctgact gacatgtgtg tctactacag acgacatggg 3600 cgcgaagtgc tggtagtcgg cgtatatgtt gatgacctac tagtgaccgg aacgggacag 3660 gaggtcgtgg atgcgatctt tgcggaattt gccgacttat ccattaagaa tttgggagag 3720 gccaggaagt ttcttgggat gagagtcgtg tacgatgagt cgtatgggta cgatctcgac 3780 caagaaatca cgatcacaga gatgctgaat gagttcggca tgggtatggc gcacggagcg 3840 cggatgccga ttggactaga atggagtgat ggatgcgaca tcgaactaga gaaattgccg 3900 atctccggtg agtccgcggt tgcgacagtg aagaagttcc agtcgttggt gggcagccta 3960 ctcggggtag ctcgctgcac aaggccagat atagcttttg ctgttcacaa ggcgtcacgg 4020 cgaacgcatg aatccacggt cacggactgg aagttggcga agcgagtact gcggtatctc 4080 gctgggacga ggcagctaag actgcggatg aaaggagaca gagggcggat ggagccactg 4140 gaagttgtgg gctatagtga cgcggacttt gcagctgata agggcgacag gaagtcggtc 4200 actggtgggc tcgtgacagt agacgggatg cccataagtt gggtctgcaa gaagcagacg 4260 ggtgtgtcct tgtttacgat ggaagcggaa tacaccgcag cgtcggtcat ggcgcaagag 4320 ttactaggcg taagagaagt gcttaaggag cttgagatcg cgttcatgga accgatgccg 4380 ctacgagtga ataaccaggc tgcgctgaag caactcgaag atgagggtgc ttcatcgaaa 4440 gcgaaccatg tggacgtacg gatcaagttc gttggacatt tcaccaagga aggcgtactg 4500 ggaccggagt atcgagagag caagaggatg cctgcggaca tcctaacgaa ggcgttgccg 4560 gctccgagac ttgatgagct gcgagctcag gtgggattgc attaagaact gggacacacc 4620 gccaggatgc agtgtcggcg aggaggag 4648 // ID Gypsy-1_PSo-I repbase; DNA; PLN; 11103 BP. XX AC AAQY01000070; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-1_PSo_; KW Gypsy-1_PSo-LTR; Gypsy-1_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-11103 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000070; Positions 59512 70614. XX CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 559..2352 FT /product="Gypsy-1_PSo-I_1p" FT /translation="MPWPLTGPVRNPRTLTIRDPLHAVTMLFCVLEDAGFK FT VHEQRISTHVREYDLETTVLTLARVYAVLQKLVPSADDSSAPLPTGDLTPP FT RLDDSRISFKFEDDGDALMRSTTSTKKPPPAPRVSRRERRAQGVPAIAAND FT VGRGKSAQVSNIAQTRPARGPRGRIQEAQEVATEPDRPGGVAEDLLYQFAN FT ERDEPEDVEMQPVTASPARPHIGYRSQTQPEYQGGLHDLSDDLGYDGGGGT FT GGRVAAVSTATRLRASAVSELKDFSGKEHDEEAARAWFNKVRTAFRRDQMQ FT PDEMCLTFADLMIGPARNWYYQLSRTARASWTDLGEQFQIHFCGKGISLAR FT EYYHMRRGSQEDPLDYLYRLNLAGIRANLKIHDGNKEQRREHVDHYIDTVQ FT DDDLAGSLVVLRLPDSEALEGVLLAMRRRHQRRKIETQGSKYRQKAPAPAA FT STRAVRVLTTGRGLRGDHGDLNEFEGESSSSDSESEDERAHVFSAARTPTP FT GDGEQPGARQDREDQLGRPKYGIRCSHCGSRKHTDLGCWKRLTCQKCGRMS FT HPTDKCFYVCKCCETFTKQVSVKSATSSMLFANGTTRLAMPDCCPRASRRR FT " FT CDS 4191..6641 FT /product="Gypsy-1_PSo-I_2p" FT /translation="MLYLLRRRGRSLTSTLVVHDRWLSVVAGSRLSSVKRC FT SNSSRGYWGWFCSLDMASGFWVVSMTDRAREISAFITPFGLFECLRMPFGL FT KNAPQIYQRLTYNALYGVLRISPGQDRADLVNIFEEGDPEDRSLPSVLGRR FT SYIDDILVGASSWDELCEKVKKLLEVCDRWNLSISAEKSSWGMSKVDYLGH FT QISGEGMFTKPKDLASLEALKFPKTLKALQSFLGSLNYYNRFIEDFAVYAT FT VLYEFGDSDFIKGRATNVSGNHEATVRWGHALRAFDTLKFKMINAPMLYHF FT APELDPVVIVYASKWAISASLVQCRDGVYVPVKFTSRTLRSHEIGYDIVEK FT EVLALLRILDSCFTMLSGRHIRVLTRHTTLAWLFRAEGLKGRLAQWSALLS FT PHSLEIERLTKGEDELLGLVAASITPRAEMDAALEEIPPQKKSTRVLAIPM FT PTFTPGENLCVVSFDGSAKPKRVGGAFSAVVWDAPGWKVVKAESGYLPDLT FT VNEAEYHGLLLGLRLIADLQIDRLNVCGDSNLVIRQLRGEMECKSSGLQLL FT REKARVILRSWPQCELIHVKRDWNEPADMLAGQALQRGAGVVVESHTDNTD FT LETLNRRGELLKTREERDAHSKVGAVTRSRSRTVAPAVLQEDVVKQLRLER FT ICRAQDEEVWIWSLKCFLHGDLSQISSRQAKTCSKLADSYEVDEHGLLMYC FT PVEGRGCDVEDCGSMVKLVMPSTLHEDLLHHFHTSVEGGHQGVSRTFQKLR FT RHFYWRGMFRSVQKYVGECVDCETGKGKPTLRGRSPGDIAANYPFQSWLWI FT ISPPSRSRSRATQSS" XX SQ Sequence 11103 BP; 2564 A; 2911 C; 3355 G; 2273 T; 0 other; caatggtgcg cgtgcccgga tctactagtc cgaaagagga cgtgaaggtg aagggtgagg 60 taagggaaga cggaactccg ctgggaccgg cggaagttaa acgtgaaaac actaggtcca 120 ccgacggaca ggcaatgggg acgcctgagc cgaaggattt cgtttacgaa gagaagttcc 180 ccgttaaggc tccgaaagga gccgtccggg actcggtcca aaaaccgagt tccattggac 240 ctgctgctaa gcgggacccc ggcgtcgctg aaaagcgagg tcgaaacctg gagcgcgagc 300 atctgaaggg ggtcatccgc gacctcgctg cccgaagcga tgctctagac gctgcgatgg 360 actacatgtc gaagatgcga agaagaaagc ggagaagaaa acgagaaatt ggagatctcg 420 gcgctagcgg tccatggccc cagcaacgac actcacgatg aagacaaacg atttcgtgaa 480 gccgaagtca actacttccg tcaagagctt gcgttcctgc tccagagaga tccgctcctg 540 cgtaagttgg ggctgacgat gccatggcct ctcacgggtc cagttcgcaa cccacgcacg 600 ctaacaatcc gggatccgct tcacgccgtc acgatgctgt tctgcgtgct cgaagatgct 660 ggtttcaagg tacatgaaca gcggatctcc acccatgtac gcgagtacga tctggaaacc 720 accgtcctta cgctcgcgcg ggtgtacgca gtgttgcaga agctcgtccc gagtgcagat 780 gactcatccg cgccgttgcc gaccggagac ctcacacctc ctcggttgga cgattcgcgg 840 atctccttca agtttgaaga tgacggtgac gctctcatga ggagcactac ctcaaccaag 900 aagcctccac cggccccacg tgtgtcccgc cgagaacgac gtgcgcaagg ggtcccagcg 960 atcgctgcaa acgatgtagg acgcgggaag tctgcgcaag tgtcaaatat tgcgcagact 1020 cgcccagcga gaggaccacg tgggaggatc caggaggctc aagaggttgc aacagagccc 1080 gatcgccccg gcggtgtggc tgaagacctt ctttaccagt ttgcgaacga gcgagacgag 1140 cctgaagacg ttgagatgca accagtcact gcgtctcccg ctcggccaca tatcgggtac 1200 cgatcccaga cacaaccgga ataccaagga ggtctccatg acctatccga tgacctcggc 1260 tatgatggag gtggcggaac cggaggtcgt gtcgcagctg tgtccacggc gactaggttg 1320 cgagcatcgg ctgtgtccga actgaaggac ttcagcggca aggaacatga cgaagaagcc 1380 gcccgagcct ggttcaacaa agttagaacg gctttccgac gggatcagat gcagccagac 1440 gagatgtgct tgacatttgc cgatttgatg ataggccctg cgcgcaattg gtattaccag 1500 ctgagccgca ccgctcgcgc gtcgtggact gacctgggtg aacagttcca gatccacttt 1560 tgcggtaaag ggatctccct cgcgcgcgag tactaccaca tgcggcgcgg gagtcaggaa 1620 gacccactgg attacttata ccggttgaat ctggccggga tacgtgcaaa cttgaagatc 1680 catgatggca acaaggaaca acgacgtgaa cacgtcgacc actacatcga tacagtccaa 1740 gatgacgatc tcgccggatc tctggtagtg ttgaggctgc ctgactcaga agctctcgaa 1800 ggcgtcctgt tggccatgcg acgccgccac caacgtcgca agattgagac ccaaggttcg 1860 aaataccgcc aaaaggctcc cgcccctgca gcctccacga gggcggtgcg ggttttgact 1920 accggtcgcg gactccgcgg agatcacgga gatctcaacg agttcgaggg cgaatcaagc 1980 agttccgata gcgaatctga agacgaaaga gcgcacgtgt tttcggcagc taggacgcct 2040 acaccaggag atggtgaaca gccaggggcg cgccaagacc gcgaagacca actggggcgc 2100 ccgaagtacg gcattcgatg ctcacactgc ggatctcgca agcatacgga tctcgggtgc 2160 tggaagaggc tcacgtgcca gaagtgtgga cgcatgagcc atcctaccga caagtgcttc 2220 tacgtctgca agtgctgtga gacgttcacg aagcaggtca gtgtaaaatc ggcgacttct 2280 tcgatgctgt tcgccaatgg tacaacccga ctcgccatgc cggactgctg cccgagagcg 2340 tcgagaaggc gttaaactag accgctcgcc aggcctgaac agcctggtac gtgacaagcg 2400 atcgaagttc tgcatttatg catatgttca gaggaaggcg cgagcgttag aagacccaac 2460 ttcctgtagt gcggtgaata cagccagatc tcttacctcg gatgaagatg actattcgcg 2520 tcgcccttgt gtgatggccc ttcgactgtc gccgggtgaa cgccgaggtt actggaagta 2580 ttacactccc tccaagtggt tcaagcagtc gaaggcgacc ggtgcggtca acaatgtccg 2640 tgccgtccta ctctttgata ctggagccga agtgtcgata atcgactcta cctttgcacg 2700 taaggtgggt tgtgaaattg atacaacaca gacaatggat tgtgttggtg tgggggatgc 2760 tgtgtaccgc acagaaggcc gagcagaagt caagctcact ttggctggag agttggtgta 2820 caagttccgt gtgtgggttg gagatctctc aagacaagac gtcattctcg gcatggattt 2880 tatggttcct gcgggggtga ggttggacct ggctgacgga acgctctgtc tgccggacga 2940 agttcgcatc cagatgaccg accgtaagcc actgtatagc agcaaggctg acgcggtcta 3000 cgcaacggga ttccatgaag tcggtcctgg ccaatggaca gagatctcac tcaagtccca 3060 caacaagcgg tttgaactgt gggtaacgag aggggggaaa tgagtgatca cggtggtgaa 3120 tggtggattc agtaacaagt catacctccg gatcaccaac atcagcacga gccgcctggt 3180 actggatcgt ttggtgtgtt tggcaatctg gttacccgtt gggcagatcc cgcgtcgacc 3240 tggattcgct aggaaggatt caaaccgcta tcggaagtgg caaacacttg cgttcgaagc 3300 agctgtggac actggagacg caaacgaagc ggaagttgaa gagtctggac cgctggtcga 3360 gcgtcctagc taccggactc cgactgcgat tttagctcgg cctccacaag tgaagaccgt 3420 tgaagcagca gcaacgtcag aagaatgcac gcgactcaca ctggacgaca cacatcctca 3480 aatgcagctg atgaaaagtt cgactgatcc gactagggtg accgaaaccg aggaggacgt 3540 gatctctacc gatcccggtc aggttatctc tggtatggac agcgatgact ccagtctacc 3600 gcgtacggaa actcacgcag gcgaggagag cggcctatcc tttacgaaca gtggcgaaat 3660 accggtaggc ttggcgtcga ctccggcaaa tgtggctgag gccgagctcc gcaaggagtt 3720 cccagaatat acccctgacc tcatgccaca atccaaaata cacgccgcgg ccaccgagga 3780 aatggttcat cgcacgttgt cggtcatcgt tgaaagcgac tggagcgaca gctgtagctg 3840 tgcgtccgaa agcgctgagt ctactggtag ctggggtagt tttgactgac agaccgacga 3900 cgagaaagaa gaggagccgg tgagcggaat gctcccagtg acccaggtcg aaccaagcca 3960 aggcggagat gcaaccgaca tggatgaagc gaagtatgtt catgaagggg ccgatctcag 4020 tgcggaagac atcgaaaagg agatggcggt gttaccagag atctccctga cggcagaagt 4080 taaaagggaa gatctcaagg tcggggatcc aactgagaac acagcagagg agattgatcg 4140 tctgcgtgat atcatttggg agcggcgtca ccttctcatc ggcaaaggga atgctttacc 4200 tcctgcggcg acgggggcga tctctgacat cgacgttggt ggtgcacgac cggtggctca 4260 gcgttgtcgc cggatcccgc ctcagttccg tgaaaaggtg ttccaactcg tcaaggggct 4320 actggggctg gttctgttct ctcgacatgg cgagtgggtt ctgggtcgtg agtatgaccg 4380 atcgagcccg agagatctcc gcgttcatta cgccgttcgg cctgttcgaa tgcctgcgaa 4440 tgccgtttgg tctgaagaat gccccccaaa tctatcagcg gctgacctat aatgcgttat 4500 atggcgtgct gcggatctcg ccgggtcaag atcgcgcgga tctcgtcaac attttcgagg 4560 aaggtgatcc tgaagatcga tcgctgccgt cggtgctggg gcgtcgctct tacatcgacg 4620 acatcttagt tggagcaagc tcgtgggacg aactgtgtga gaaggtcaag aagctcctag 4680 aggtttgtga ccgctggaat ctgtctatta gcgcggagaa gagcagttgg ggtatgagca 4740 aagttgacta tctggggcat cagatctccg gtgaaggcat gttcaccaag ccgaaagatt 4800 tggcaagtct ggaggcgttg aagtttccca aaacgcttaa ggctctccag tcattcctcg 4860 gcagtctcaa ctactacaat cgcttcatcg aagatttcgc agtatatgcc acagtgttgt 4920 atgagttcgg agattccgat ttcatcaagg gtcgagccac aaacgtcagc ggaaatcacg 4980 aggcgactgt gagatggggc cacgcgctac gagccttcga taccctgaag ttcaagatga 5040 tcaacgcacc catgctctac cattttgccc cagagttgga tcctgttgtg attgtgtacg 5100 caagcaagtg ggcgatctct gcctctctcg ttcagtgtcg tgatggagtg tacgtacccg 5160 tcaaatttac gagtaggaca ctgcggtctc acgagatcgg gtacgacatt gtggagaagg 5220 aagtactggc tctgctaaga atcctcgata gctgcttcac catgctgagt ggtcgacaca 5280 tccgagtgct caccagacac acgactctcg catggctctt ccgcgcggaa ggcttgaagg 5340 gacggctagc tcagtggtcg gcgctgctct ccccccattc gctagagatc gaacgtttaa 5400 cgaaaggcga agatgagcta ctaggtttgg ttgccgccag tatcactccg cgcgcagaga 5460 tggatgcagc gttggaggag atccctccgc agaagaagtc gacgagagta ttggctatcc 5520 cgatgccgac ttttacgccc ggagaaaacc tttgcgtcgt cagctttgac ggatcggcca 5580 agccgaaacg agttggtgga gctttcagcg ctgtggtatg ggatgctcct ggatggaagg 5640 ttgtcaaggc tgaatctggc tatttaccgg acctcactgt gaacgaggcc gagtaccatg 5700 gcctccttct cggacttcgt ttgattgccg atctccagat cgaccgtctc aatgtgtgtg 5760 gcgactccaa tttagtcatc cgccaactgc gtggagagat ggagtgcaag tcatcgggac 5820 tccagctcct gcgtgagaag gccagagtga ttttgcggtc ttggccgcaa tgcgaactca 5880 tccacgtaaa acgcgattgg aacgaacccg cggatatgct ggcgggacag gcgctgcagc 5940 gtggtgccgg ggtagttgtc gagagtcaca ccgataacac ggacctcgag accttgaatc 6000 gacggggcga gctcctcaag acgcgcgaag aacgtgacgc ccattcgaag gtaggcgctg 6060 tcacgcgaag ccgatctcgt actgtcgcac cagccgtgtt gcaggaagac gtcgtcaagc 6120 agctgcgctt ggaacgtatt tgccgtgctc aagacgagga ggtgtggatc tggtcactga 6180 agtgtttcct gcacggtgat ctctctcaga tctcgagccg tcaagccaag acgtgcagta 6240 aactggctga cagttacgag gtcgacgagc atggcctctt gatgtactgt ccagtcgagg 6300 ggcgcggttg tgatgtcgag gactgtggat ctatggtgaa actggtaatg ccgagtacac 6360 tccacgaaga tctcctgcat catttccaca caagtgtgga gggaggtcat cagggagtca 6420 gccgaacatt ccaaaagctt cggaggcatt tctactggcg aggtatgttc cgaagtgtgc 6480 agaagtatgt cggggagtgc gtcgactgcg agacgggaaa aggaaagccc accttgcggg 6540 ggcgatcgcc gggcgatatc gccgctaatt accctttcca gtcgtggcta tggatcatat 6600 ccccaccctc ccgaagtcgt tcaagggcaa cacagagctc ctagtcttcg tggatctctt 6660 caccggcttc gttgtggcaa aggcaaacgc ggacaggacc gcaccaacag tggctgaggc 6720 atacgaggaa tgcatgtttc ggcggtacgg agccagcgaa gtaatcaggc acgaccagga 6780 accgagcttc atgtccgact ttttccggtc gtttaatgcg ctgctgggcc agcgtcagcg 6840 atctacgctc gcgtatagac ctcaagcaaa cggcacagcg gagcggatgg tctagactat 6900 ttccagatct ctgcggatgt acgttgaaga cgagaaccaa caggactggg atgaatatgc 6960 ggagcggttg gtgtttgcgt tgaacacatc gcatgaccga gtacgcaagg acacgccatt 7020 ctttttgctg cacgggtggg accctaaaac gactattgag gcatcgttgg ctgttggagg 7080 gaccggaagc cgagatctcg acccacagaa atggaggttc aagatccaac gccaatacca 7140 acgtgctcag acagagactc gtcgtctcct cgccgaagct cgtgagagtc gcgcggaagc 7200 ccacaatgag aacgtaccgg agtcacccat taaggaggga tcgcaggtgt ggctgtacct 7260 cgaccgagtc aagatcggat acgctcggaa gctcgctcac atgtggcatg ggcctttcag 7320 agtcgccacc atggtgagcg actacgctgc caagctggaa atcagcggga ctgactaccg 7380 actgttccct atcgtacaca tctcgaagct gaagctggtc caacagttcc ccgaacgacc 7440 cgccgaagat ctcactgttg atgaaagcga acgatttgac tttgacgaag aacttctccc 7500 cgaggatagc tgggaggcac aaactcgcgg tgacaacgag tatgaagttg aagagatctt 7560 ggatgtcaag acggagagac gcacccgcta cggtcgacgg ctcaaggaat atttggtgcg 7620 ttggaagggc cacgcagaga cgaattgggt caagcaagaa cacctgaact gtggtggtct 7680 gctgttcgac ttccagcaga agcgacggag ccggcagagg ttccatgtga tgcaatcgcg 7740 tggagaggcc gacatcgccg aagagtgagg cggtgttggg gggggtagcg tggtggacgc 7800 tatccgtaat ggtggatggt atttgttgca catttacatt tgattgagtg gaagaagtaa 7860 tggagagaag atcacgcgat ggaatggaga aacgaggtta gttgtgatga tctggtcgga 7920 cattagaatt acgacgaacg agtactcggg ggcgacttgg agatccagcc cggtgtcgca 7980 gtgctggagg cacctggggt gcgaacgcgc gtccgacgac tgctgaaacg cgcttgccac 8040 gacgcgctgg gcctgtgcga tggtgaaacc cggcaccgtt cgtgtcggag actaccttcg 8100 cgttccgtcg attttggccg gatcgctgtc atcgccgact tggagatcca gcccggagcc 8160 gcagtgcagg agacaccgag ggcgtgaagg cgtggtcggt ggccgtcgga ctaagtgcag 8220 tcctacgcct ggagtttgtg ctatggcctt gatcaccaca aatcactacc cagaatgcac 8280 ggcgacctac gacatgcctt tacatctcca gttggggaga tctcccagtc atgacattga 8340 ctgtgtacaa ttaagttgtg gggcgggagt gatatgaaat ggagtcgaag ccggtgtatt 8400 acgatgtcga taaagaagat gcatgctcga ggagactacc cactagctac gtacattggt 8460 gaaggaagaa atgtcggacg ctggagattt ccgggggtcc tcctaggtct gttcagctga 8520 ctcaggctag gcgattgacg aggtcgcctt gaacttgcct cgaaggcgcg tgtggatggg 8580 ttcgttcatc gatgggtgtt tggcacgagc gttccagtag aacaggcgcc acggctccgc 8640 ctcgtcagtc gttcgtaaga cgtgtaacag atctccagag gcaccagaag ctcccttagg 8700 gaaccacggg cacgttgcga tcagcggcac gaagaatggc tacagaagaa tgtccaagtc 8760 gcacacatga gccttgcaca ggcgggccac ctcttcgaac acaggcagca gcatcttcac 8820 aaagtgggat ctccgattgt tacgatccga agtgaacttc acctcccaag actcagcgct 8880 ggccttggaa atggaaatct cgatggagtg ggtgatctcc cagaacacaa gcgcgccacg 8940 attatcgttc cgagtcagca catcgcggat gatggccaga agaggttgga agcgggggtc 9000 tccaatgtcg aacgagactg ggtcgggcat gttatccaca aagatcttcc agggactcgc 9060 tttgtataaa gcttcgaccg aggcttgtgg ccagggccga tagtggccag tttccccttc 9120 ttagggttgc acaccccggc gggtagcagc cagtcgcgtg gtaagaactt cgaagcgagg 9180 tctttggctg taagctagtc aaggcggtga ccggcaacaa cctcccacag ccacgacgtg 9240 acatcggcag ggcgcgcagc ttcgctggac tcaggtggaa ttgcgtgtgt gaatgggctt 9300 caggctgata cagagatcca cgggctgtca gacggagatc tatgaaaatc gcttgtctga 9360 caatgaggag gagctacgta tccatcgccg tagaggaaga caactcagct ggcgctccct 9420 cggtagtcgc aacggcgcgc tttgcacgct tcgactgtga cgttggatca gaagagagat 9480 ctccacttcg ctttgccgag ccagacggga gctgctgcga agatgttcgc gctggaagat 9540 cagaggagac aaggctcgtg gccgttgacg ccagtgtggc aagagacgaa ctggaagagg 9600 ccgacgccac gcatcgttcc acctcaggtt gcggagtcgg tgcagctacc agattgatca 9660 agttgcgcaa cgctccaagg tgttcctcac gctccgctag tttgctgcgg agatcagcag 9720 aagaagcctg ctccttcagc agcgactgtc gactcgcatc cagctccgcc tgcaagtcgt 9780 cgcgagcgag ggaggcctcc gctcgctctc gttctacaaa gcaataaacg cacaggtcag 9840 cacaagagtc aacccgccac attagcacgc gcgatcatga cctgcagcca ctgcgcgatc 9900 ctgagctgtt gcgagatcag cctgacgatg ctccaaactg ttcttgaaga cgacgttctc 9960 acgctgtaga acggtgttat gctgagtcag ccgagtgatc ttcctctcca actcctccag 10020 tcgcttccca gccaccttat gccgctgtgc gagatccgat aacgctgtcg ctgtggggat 10080 caaggcgtta gtgatgcaac atcaacaacc tcagcacttg ggacgacgta ccaccatctt 10140 gcgccttctt cgacgacgcc accgcttctt gtcgtgctgc ttctgcgtcc tcacgagctt 10200 tggacgcatc caagcgaagg gcgtccatcc gtggcgctgc tttgttgacc agcgtgcgcg 10260 attgcgccaa ctcggtctgc aacctgtcga ttgtcgcctc cgcttggcgc aattgattgc 10320 gatatctgtc tcgttcggca ttggatcgtt gcagggcacg tcccgcgcgt ccgtcactag 10380 tccgatcatc atcagtggca gcttcgctgg tagccaacag tcggccacct ggggtcaccg 10440 atgcagtggg aggaggggtc caggtagcct tgatatctgc cagctcgatc atccagatct 10500 ccgagggcga tctccaactg actggggacg acgttagagg gcgatgctgc agcggacgga 10560 gtgacttcat cggcatcagc tgagcgagcg gcgacccgtg cgagatctgc gcgtacttgt 10620 tgttcagcag cttcggcttg ctgacggcgt tctacttcgg tgttcagggc ctgctggaga 10680 tctcggagac gaccgtcggc ttcgttgcgc acgcgttgaa cctccagatc gcgatcatgg 10740 atggatcgat gaagacttgc agtgtggcga ccagatgctt caagaagatc atgggcgacg 10800 tcaagacggc cccggagatc cagcacctcg tgatcgaggg ccgcggtgac ttgagcagcc 10860 tggataatgc gcgcgtgttc cgatagagat ggctgctaac cggagtatgg agccgcggcc 10920 ggtatagatc gtgacaggcg gtgcaatctc cgtggctgta ggtcgacgac ggggcagcac 10980 tcagcagagg gacgccggcg gccaacgacg aaggcgacga cgtgggtgga gaagcagaca 11040 tggtgcagga gctctacgcg tggcagccac ctgctcgata gcctcacgcg aagagagggc 11100 gga 11103 // ID Gypsy-10_ES-LTR repbase; DNA; PLN; 635 BP. XX AC CABU01000590; XX DT 07-FEB-2011 (Rel. 16.02, Created) DT 07-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Ectocarpus siliculosus genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-10_ES_; KW Gypsy-10_ES-I; Gypsy-10_ES-LTR. XX OS Ectocarpus siliculosus OC Eukaryota; stramenopiles; PX clade; Phaeophyceae; Ectocarpales; OC Ectocarpaceae; Ectocarpus. XX RN [1] RP 1-635 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Ectocarpus siliculosus genome."; RL Direct Submission to RU (07-FEB-2011). XX DR Genome; CABU01000590; Positions 57182 56548. XX SQ Sequence 635 BP; 165 A; 162 C; 158 G; 150 T; 0 other; tgttatggcg gctgcgtgca gaatctacac aaaatactat aatgggccgt gactgttcga 60 tggttacggc gctaggggtc tgggggctat attcaggaat cgaagtatcg aacacttccc 120 tgtttgccct ctagagtgat cgaagaggcg gcggatatgc cgcatctacg aagaagagga 180 caacttcaac ttgtcccttc gtgacacgtt ctcacgaacg ttgtcaacaa gcaccggtgt 240 ttattaaaca cccccaatgt ggatgaaagt taataaagcc cgttaaagtg catatatcac 300 ccgtcaaccc gctagcaaca tgtctatcac atgcctcact atgcatgtca acatgagcga 360 acgggtgatt actgtgtggg ccgttggtga gtaaatgacg gtcgacttcg gcacgacggc 420 cgtcagcaag ctgctacatt gctgccagat accgtacgag aagtggagac catcatggga 480 gagacacgtg atccaggtaa gcgccctgcc cctcccacct tgcccacact gatcccagcc 540 ccgaggaata cggtctacgc acgaactgta ctcagctacg aaaggtgaaa gaagtctact 600 ttgtatgagc gctttccttt ttagctgttt taaca 635 // ID Gypsy-34_PIT-LTR repbase; DNA; PLN; 1079 BP. XX AC AATU01000764; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: long DE terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-34_PIT_; KW Gypsy-34_PIT-I; Gypsy-34_PIT-LTR. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-1079 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01000764; Positions 51098 52176. XX SQ Sequence 1079 BP; 263 A; 238 C; 407 G; 171 T; 0 other; tgtagcggat catgcgacga tgtgtgccat atgacggaag agtcaggcgg tgatcggcag 60 aaagagtgtc actcggtcac atcggactcg aggggcatgg cggacgagta ctgccgaacg 120 agtggatacg agtgcccggc tggcgctggg ctgggttgtg gctggttgaa gctctgccag 180 atggtcgccg tcaacgacga agtgacactg gcgtgcggct ggcagatgaa gcagtccgtt 240 tggattttgc gacgaagagc gcagacggta tcgcgtttgc gacgaaggac ggagacgagc 300 taaagtcagc ggcggagtac gcggacggtg atcgaggaga cggacgtgag cgagaagacg 360 gacgtgggtg tgaggcggaa ccgagtgagg agacggaagc gcacgagtcg tacgtgaacc 420 ttaagtacga ggcctgcgga ggacctgagt cgacgggcga caaggggctg aaggggaagg 480 gggacgacgg cgttgagtgc cggaggacct acgagggcga cgagtggacg aggtatcagt 540 ggagagcgct tggtgcggca tcgcgggcag cgaaggcaga gaccaaacga ggtgacggag 600 caggagacca ggtgggtccc caagtctgct gacggctgca acggagagga aggcgcctga 660 ggcgtactcc taagtggcta agtgagcgat tccgggtcta tgctggagcg gcagagtcgg 720 tgtagcaggt caagcgctag ctggtgctga ggacacgagt ggcaacgaga agtcttagcg 780 taagctgagc aaacgaggaa gccttggcgt aagttaagca gacgataagt ccttacgaaa 840 gtagagcaag acgagtacga ggttggtgca gagcagcgag tagccgtagc acgactaata 900 gaaagtagga gcggacacgc cagtggacgt tccggcgcag ggatcaagtg gattcctgtc 960 ggccattaga cgagtttacc tttcctcaag cagttggcgg aaggaaacga acgaccgtag 1020 cgcagtactg tggccatacg acccgcccca cggccggacg agataattgg cccgcttca 1079 // ID Gypsy14-LTR_VC repbase; DNA; PLN; 323 BP. XX AC scaffold_66; XX DT 27-FEB-2008 (Rel. 13.02, Created) DT 27-FEB-2008 (Rel. 13.02, Last updated, Version 1) XX DE LTR retrotransposon from volvox: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy14-VC; KW Gypsy14-I_VC; Gypsy14-LTR_VC. XX OS Volvox carteri OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; OC Chlamydomonadales; Volvocaceae; Volvox. XX RN [1] RP 1-323 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from volvox."; RL Repbase Reports 8(2), 142-142 (2008). XX DR Genome; scaffold_66; Positions 13412 13090. XX CC CC This sequence was derived from sequence data generated by US CC Department of Energy Joint Genome Institute. XX SQ Sequence 323 BP; 94 A; 72 C; 68 G; 89 T; 0 other; tgttgtagcg cgatagctac acagtaatga tgagcttatc acgaaatatg cgaatcaatt 60 atgatcatga aatcttctga aaactgacct ggctgtcaag aatcgtttgt aagaattcac 120 cggaactgaa catcatgaat ctgtacgaca gccttaccga aatccataaa tttactgaaa 180 tcgtctttgc tcacagaacg gacgtgggtt cttttagaat tcatattcta ctcatgttcg 240 gagcgcggtc ttataccgtt gtcggggcag tgccggcctg agacatactt cacgggccag 300 tagcactgca ctatactaca aca 323 // ID Gypsy-2-LTR_PI repbase; DNA; PLN; 203 BP. XX AC . XX DT 29-APR-2009 (Rel. 14.04, Created) DT 29-APR-2009 (Rel. 14.04, Last updated, Version 1) XX DE Long terminal repeat of the LTR retrotransposon - a consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-2-LTR_PI. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-203 RA Bao W. and Jurka J.; RT "Gypsy LTR retrotransposons from Phytophthora infestans."; RL Repbase Reports 9(4), 732-732 (2009). XX DR [1] (Consensus) XX SQ Sequence 203 BP; 53 A; 47 C; 53 G; 50 T; 0 other; tgtatcagat atgataggtg tagagtttca gccaatcaga gacaggctca gtttaacata 60 gattcagtat gtaatacaaa aaggcagatg tagggcggcc gtggaacctt ctagaaggtt 120 ctagaaggtt ccatccgcct gaactgcggg ggcggcactt ctcgtttcgc gcgccctccc 180 ccaagctagc gtttcctgaa ata 203 // ID Gypsy-30_PIT-I repbase; DNA; PLN; 5124 BP. XX AC AATU01001424; XX DT 10-FEB-2011 (Rel. 16.02, Created) DT 10-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora infestans genome: DE internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-30_PIT_; KW Gypsy-30_PIT-LTR; Gypsy-30_PIT-I. XX OS Phytophthora infestans OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-5124 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora infestans genome."; RL Direct Submission to RU (10-FEB-2011). XX DR Genome; AATU01001424; Positions 393442 388319. XX CC Positions [3495-4010] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS join(1179..2657,2661..4277) FT /product="Gypsy-30_PIT-I_1p" FT /translation="MNIISRKHVDLLREQDAAVVLVELDAPITSRAVGGAL FT LTSTHIVEVRLTLNTAAGPVRCQEAKKCLIVETDEDEFIVGKLLLVELGID FT VDHQLEHLATRGMEDDDPCGDPEGMPPCKPADGDIVMKVVDALVRDAMDRG FT VIDEYKTSRLYGVVRKYDGWRLELGDYPPARVPALKIRLKPGATPYRCNVR FT QYSPAKSEFMAEFNKKLVSLGWVYENRESRWCCPALPVTKPHTSKFRQTVD FT YGPTNSVTEPIAGVMPRLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSCQE FT ILSYMTDRGVFTPTRVPQGSTDAALHFQSTVEMVLGDLVDKSVIVWIDDLL FT VFADTAEKLVDAIDVVLVKLDKHGLLLSPKKSALFLTEVRWCGRIINRLGI FT GHDPERIQALRDMLVPKTAAELQQFLCASNWMRSGLVDYAQVARPLQERLD FT SSLTGSKKTKRIAAGIKLNLTEAEVKCFNAVKGLLGNSAMLTFPDPAKLCL FT LSDASDYGWGLVVTQVGQWQDDVFIHEQHHELLVCMGGNFKGSALNWSVIE FT KESYPIVHACERLEYLLLRPQGFKLYCDHRNIVYLFAPNKELKKHVRGKLL FT RWSTKLLEYRYAIEHIEGIHNVWTDLISRWGGKPLPTARMQSAKRFTRANR FT KRGSSAVTGTTTPPLRPLDQDGSVWPTIEEIGSVQALHDAPKGATLSDDEL FT WLVNNMMWIPSGAHDLSQRLLIVAHCGRNGHRGIHVMENHIRRLFYIGGLT FT RIVKDFCSKCLLCLHVKGGVVIPRPFSETHYTYERSETLHWDFLTLGDSFG FT TSRYTLVLKDETTHFTELVACDSPTSEVAASAILDWYSRFGAPRVWVSDSG FT SHSKNKVVADLGRRLKSRQGFVLAYSPWKNGSVERVNRDILQVLKALALEY FT KISLHDWPYLHPLVQSSINHSPVPSLANRAPIELFTGLPCPSALDTVFFPG FT GKGRVATLDQPAPSTVERLTKLRETSATCTSLPRRSDNARPNGTGYDHTMS FT NLETSRSVITSYVLESMRSCMRTSYE" XX SQ Sequence 5124 BP; 1356 A; 1186 C; 1425 G; 1157 T; 0 other; aagttaactt tagtaatcta tcgtgcagat acgatgagga ctcgcagtgg ccgttcgaac 60 caagttggtc aaggagccgc gactgctgga gcaacagcta caacggatag tggcgactta 120 agcgcgaatg cgacggccac cattccggta tcatcaacgt ctatctcgcc accgtacgtg 180 acagatgtgt cccacgccgc cctcgtgaag tggaagcgcg agcgacagga gtatgaggag 240 gcaattgagg cgcgctgcag tataactggt gaaaacaagg ggaaggcgct acgaagcgtg 300 aaaaattcgt tcaaccggca attactcagc acgttgtgca gacttgagtg gggcacgact 360 gtggaggagg tcactgatgc tcggattatc gtagagttgg acaagattgt cggaaacgtc 420 atgaatgacg cgatcctcga tgttgatgca attttcaatg acgaactata gatgaatcta 480 cgtgagcggg atgtgaaagc tcgcgtgatc aactacttca tgcgctgcga tgagatcata 540 ttgcagcacg gtatggcaag catcttctcc actgagacgg ggaagaagga gaagtgtaac 600 attctcagga aacatctcga gcctgctgcg ttgcgtgagg ctgtggacac acacctacgc 660 atcgtagacg cgagcagcaa atcggacgag agtgcacttt acatgcttgt gaaggaaaaa 720 gcgctggagc aagagcgagt gtatcagtag ctggccaaac gtaggcatca accgaccact 780 tcgcacaata ctgggaaaag aagagcgatg gtgacccggg gtcccgtcat ggcaaccagc 840 gttccagctc cgatcggaag gttgaaaaag cctccgaacg tggacgttct gtgcaggcac 900 agaccaagcc tgcagcagcg tgtcagggca agccacggac tggctgtttt cactctggca 960 aggaccactg gctcagtcag tgcccggacc tagatgaggc tgcgaaagaa gccattttgc 1020 ccgaaagaaa aaacaagagt ggtgtcaaca atgaaaagaa caagaaattg cgctcgaagc 1080 gcgtcgatgc accttctacg acgaacaagg agtgttgtcc tacggtagtc atcaacggaa 1140 cactggagct gccgtattgc gccgacagcg gctcggatat gaacatcatt tcgcgtaagc 1200 acgtcgatct gcttcgtgag caggatgcgg ccgttgtgct agtcgaattg gatgcaccaa 1260 tcacttcgag ggctgttggt ggagctttgc tcacctcaac acatatagtt gaagttcgac 1320 tgacgcttaa tactgcagca gggcctgtga ggtgccaaga ggcaaaaaag tgtttgattg 1380 tcgagaccga cgaagacgaa tttatcgttg gtaaactgtt gctggtcgag cttggtatcg 1440 atgtggacca ccaattagag catctggcta ctcgtggaat ggaagatgac gatccgtgtg 1500 gcgatcctga gggaatgcca ccatgtaaac ctgctgatgg cgacattgtg atgaaagttg 1560 tggatgcgtt agtgcgtgac gctatggacc gtggtgtgat tgacgaatac aaaactagtc 1620 gactgtatgg ggtggttcgt aagtatgacg gatggcgttt agagcttggg gattaccctc 1680 ctgcgcgtgt acccgcactg aagatcaggt tgaaaccagg tgcgacacca tatcggtgta 1740 acgttcgaca gtatagcccg gcgaaatctg agtttatggc cgagttcaac aagaagctgg 1800 tgtcactcgg ttgggtatac gaaaatcgtg agagccgttg gtgttgccct gctttacctg 1860 tgacgaagcc acacaccagc aaatttagac aaactgtgga ttatggacct acaaattctg 1920 tgactgaacc gattgccggc gtaatgccaa ggcttgaggt ggccctcgag cactgcaaag 1980 gaaaaatgtt ttacgcggtg ttcgacttct taaagggatt ctggcagcta cccttggaca 2040 agagttgtca agaaatcctc tcttacatga cagaccgagg tgtttttaca cctacacgag 2100 tacctcaggg gagtacagac gcagcactgc actttcagtc aacagtggaa atggtattgg 2160 gcgatctggt ggacaagagc gttatagtat ggattgatga tttgttggtt ttcgctgaca 2220 ctgcagaaaa attagtggat gcgatcgatg ttgtactggt gaagctagac aagcatggac 2280 ttttgctcag cccaaaaaag agtgccctct ttcttactga agtgcgatgg tgcggtcgta 2340 ttatcaatcg actcgggatc gggcacgacc cagagcgaat ccaagctctg cgcgacatgc 2400 ttgtgcccaa gaccgctgca gagttacaac agttcctctg tgcgagcaac tggatgaggt 2460 cagggctcgt agactatgct caggtagcac gaccactaca ggagcggctt gatagctctc 2520 ttaccggctc caaaaagacg aaacgtatcg ccgcaggcat taagctgaat ttgactgaag 2580 ctgaggttaa atgtttcaac gctgtgaagg gcctgctcgg caattcggca atgctcacat 2640 ttccagaccc ggccaaataa ctgtgtcttt tgagcgatgc ttctgactat ggatggggac 2700 ttgtggtcac acaagtgggt cagtggcaag atgatgtatt catccacgaa cagcaccacg 2760 aactgctcgt gtgtatgggc gggaacttca aaggctctgc actcaattgg agcgtcattg 2820 agaaagagtc ttacccaatt gtacacgcgt gcgaaagact ggagtaccta ctcctacgac 2880 cccaaggttt caagctttac tgtgaccatc gaaatatcgt gtatctcttc gctccgaaca 2940 aagaactgaa gaagcacgtc cggggtaaat tgctgcgctg gtccacgaag ttattggagt 3000 atagatacgc gatcgaacac attgagggaa tccataacgt gtggacagac ctgatctcga 3060 ggtggggtgg caaaccccta cctactgcgc gcatgcagtc agctaagaga ttcacacgtg 3120 ccaaccggaa gcgtggcagc agtgcagtga caggcacaac aacaccaccg ctgcgtccac 3180 tagatcagga cggatctgtg tggcccacta tcgaggaaat cggaagcgtg caagcattgc 3240 acgatgcgcc aaagggtgca acgctgagtg atgatgaact gtggctcgtg aataacatga 3300 tgtggatacc aagtggagct cacgaccttt ctcagagact tctgatagtc gctcattgtg 3360 gtagaaatgg acaccgcggc atacatgtga tggagaacca cattcgccgg ttgttctaca 3420 ttggtggcct cactaggatt gtaaaggatt tctgctcgaa atgcctactc tgcctacatg 3480 tgaagggagg ggtggtgatc ccccgacctt ttagtgagac ccactatact tatgagcgga 3540 gcgagacgct acactgggac tttttgactc tgggcgactc ttttggtacc tctcgctaca 3600 cgctcgtcct gaaggacgag acaacccact tcacagagtt ggtggcctgt gacagcccaa 3660 catctgaagt tgcagcgagt gccatcctgg actggtacag ccgctttgga gcgccgaggg 3720 tgtgggttag tgactcggga tcacattcta agaacaaggt ggtggcagat ctaggccgga 3780 gactgaaaag tcgccaaggg tttgtgctag catactcacc ttggaaaaac ggctcagtgg 3840 agcgcgtaaa ccgggacatc ttgcaagtac taaaggcact ggcacttgag tacaagatca 3900 gcttgcacga ctggccctac ctacacccgc tggtacagtc cagcataaac cactcaccgg 3960 taccgtcact agctaaccgg gctccgattg agttatttac gggattgcca tgtcccagtg 4020 cattggacac ggtatttttc ccgggaggga aggggcgtgt agctacgctg gaccaaccag 4080 cgccaagtac agtggagcga cttaccaaac tacgagaaac atctgcaaca tgcacaagtc 4140 tgccaaggag gagcgacaac gccaggccaa acggtaccgg ctacgaccac actatgagca 4200 acctggaaac ttctcggtcg gtgattacgt cctacgttct cgagtcgatg agaagttgca 4260 tgcgaacaag ctacgagtga tgtgggtcgg tccgtatcgc gtggttggca gtgctgacta 4320 ctattttact gtgaagcatt tggtcagtgg aaaaacaatg aatgtgcacc catctcgtct 4380 aaaactgtat gcagacgact cactaaatgt gactgaggag cttctcgacc atgttgcctc 4440 tcaagtaaca ctgctggccg tagaagcgat cgtggggcac cgattgaatg cagacacgca 4500 ggcgtatgag gtgaaagtaa agtggcttgg ccttgagacc gtcgaggact cctgggagcc 4560 tttaaagacc atgagtgaag atgtaccaca acttttacta aactacgcta atgaagctcg 4620 tgatggtacc ttcctacgct ctacaacaac agccatcgat cggaagtcaa gccaacccac 4680 aacacttcct aaaggctaag ttatgggcac atcctgttca agacgattat cgatttgaga 4740 aggatctaca actggggacg gcctacgact tggttagaga ctgaaacttc tggtacccct 4800 ggtatcatca acaacggcta cgatggcaaa gtttcgagtt gcaggacgag gtacaggcaa 4860 tacaattctg atttgaagtt ttggacgcct gtgattggat gaaatcccaa tccttggatt 4920 ttcattggct gaagctgaat tggtgcaaat ctttgggaaa tgaacctgta acactgcaac 4980 gtgttgaagt tggcgtaccg gctatgacaa gatatgtaac gagacggttt taagtacacg 5040 atcatgggga gaacagcatt tataacacgg cgacgacgac gggaggaatt ataactgcgg 5100 tgttggaaag cttggggggc agtg 5124 // ID CGT1 repbase; DNA; PLN; 3255 BP. XX AC L76172; XX DT 13-AUG-1999 (Rel. 4.07, Created) DT 13-AUG-1999 (Rel. 4.07, Last updated, Version 1) XX DE CGT1 is a non-LTR retrotransposon - a partial sequence. XX KW Non-LTR Retrotransposon; Transposable Element; CGT1; ORF1; ORF2; KW reverse transcriptase. XX OS Glomerella cingulata OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; OC Sordariomycetes; Hypocreomycetidae; OC Hypocreomycetidae incertae sedis; Glomerellaceae; Glomerella. XX RN [1] RP 1-3255 RA He C., Nourse P.J., Kelemu S., Irwin A.J. and Manners M.J.; RT "CgT1: A non-LTR retrotransposon with restricted distribution in RT the fungal phytopathogen Colletotrichum gloeosporioides."; RL Mol. Gen. Genet 252(3), 320-331 (1996). XX DR GenBank; L76172; Positions 1 3255. XX CC ORF1: <1..1739 (has a stop codon) CC ORF2 (reverse transcriptase): 1702..>3255 CC There are about 30 copies of CGT1 in the genome and the complete CC sequence length is 5.7 kb [1]. It has 3' poly(A) tail and is CC flanked by 10-15 bp-long target-site duplications. XX SQ Sequence 3255 BP; 875 A; 1017 C; 742 G; 621 T; 0 other; atggcaatta ttacatccgg acgggccgag cccaacttcc ctcctacata ccaccccacc 60 ggcacccact gttagtgccg cgctgggtct gccaccctaa cactaacacc gcccaaccta 120 ccccccaacg acaagaaccc tcgcccgcga tggcctcaca gccagccgcg ggcccctcgc 180 agggccctat cggcctccta tcctcgatgc ataacctgcc gaagacccct ccccccccta 240 cctccctacc cccgcgtccg aggggcctca cgcccccccc tatccagctc ctgggaagag 300 ggcgacgatc ggccactgcc gcccttcagc aagcccggga aggccgggcc ctccgagatg 360 aggccctaga cctccttgca aaaggactag ataccctcat tggaacggct ccagcccgcc 420 tgaaggctac agcccaggac cttatcgact ccttcaccag atttgcaact gcagaaatct 480 ctggacccac ccctaccccc agccccggaa aaacgtacgc ccaggccgtt ggaggctcca 540 ctataggtgg acccctctcc ggccccggcc ccggccccag gccgagccga acaacaggct 600 ggcaggccac caactacgca aacaagccaa aacgggccca ggatctccgc ctactagttc 660 ggctccctgc tgaacatatc cctacatcta gatccctggc ccctcactca gttaagatgg 720 tagttaccaa agagcttaac ctacagccat aagacctagt tgaagtccga catactgcta 780 ctggcttctc gctcaagccc cagaacaagg aaatccaagc cctactcctc cagagggctc 840 ctgagatcaa gaactgtctc acggctgaga aggtagaggt gcccacaaag tggtaccaat 900 ataatatccc attctgcccc ctctacttca caagccttga tggtagtagg gtaagcatag 960 aatctgaaat agaagaggag gtccttctaa ggacaaagca aagacttctc tcctggcgcc 1020 caacccgagg tagcctaaac ctggctacag ccacgcaaag cctgattatt gccctcccac 1080 aggaggttaa ggaaggcttc cgcctattcg gccagtcagg ccctgcccgt ctgcttcccc 1140 caaggaagcg tacccctaaa cgacactctc ctggctgcca gggctttcac tcaaaccgtt 1200 tttgcactag gcaagccctc tgtgagaact gcagcaaacc cttagatact catgaggctg 1260 ggctatgcct agctagatct aagtgcgcta actgctatgg gcccttccca tcaagccata 1320 cagactgccc agctagacct ttaatagtga atgggagcct taccatccca acccggaagg 1380 aactgcgagg gatccgaaaa gctggagagg aaacaactaa gaacctctct gctagccaga 1440 cctgccccct aggaagcaca cagcaagcca acgctacaca ggggcaacag ccagcatcaa 1500 aacgccctcg cccccttaca cctacacagg actcaattgt tgttgcagat accactagtg 1560 tggctggaag cagcagtagt atggatgagg atgagactga agactctgaa gccctccccc 1620 ttactaaccg ccctatccgc ccgcttccaa gcagtagcag aagccagagg gtagcacaga 1680 agcctgacta taacgttatt aatgcctaca cccaccttga cctcaactca gagccttagg 1740 ttcaggccag cttccccaca ggcactacgg gtcgcccagt gtaacgtggg gaagataagt 1800 ccagctcata cagctctcct agagctctgc tgggcagatc agatcgatat agtactgatc 1860 caggagccct ggataggcta tagagataag atgcaaatca acacacaccc aggctataac 1920 tcttatgtgc cagtagactt ctggaacagc agggacacaa ggcctagggt tatgacctat 1980 acacgcaaaa gtctaaggat acgaattcag caacaaagac ctagcccttc aagggatatc 2040 ttatgggtga aagctggcga cctaactatt atcaatatat ataggccacc aggggagcct 2100 attaaccaca ccactactac cctactagat tatcaaccac cagagggaac ccttattgct 2160 ggggatctga acgcccgcca tccctcgtgg gagcctggat cctctagccg gaaccgggga 2220 gacgatattg cagagtgggc agaaggctat aatctcaagt ttattgggga agctggggct 2280 ccaacccata cccatgggca cacactcgac cttaccttct caaatattcc ctttgcagag 2340 gcctatatca gcgcacacct acatccagga gctgaccacc aagcaatcat aataatcata 2400 cctataaaca agagccagga gcaatggtgt cagtctagcc acccaatagt ctcagattca 2460 gccctacttc ggctggccga cctagtacag atggggatcc cagccctgcc taccttaggg 2520 gatataccta ctccagcaga gatagactcc ctagctaccc aactagtcag cctcctctct 2580 acagctatcc aagcagttgg gaagagacgg actaaccagg gaagtagagc cccctggtgg 2640 acagaggagt gctcagaggc ccaccgagca gttattgagg ctaggcgtca gcaagcccaa 2700 gaacctgggc tagcagtacc accgcctatc ctagaggagc agaaggcctt tctgaccaca 2760 gtcaggaagg caaagcgcgc ctactgggct gctaaggttg aggaggctgg gactaaccag 2820 aatctatatc agatattaag ctggcgtaag tctggtctag ctgttaaagc cccacctcta 2880 ctagtagatg gacaggctat caacaacagt tacgataaag cccaagcctt acggaaagct 2940 atactagaga gatttgatgc tgcagacgac ctacctggga acccattcac tgttcctatg 3000 gttataaggc gtctaatccc ctggcagcac acagtcagca tagaggaagt acgccaggca 3060 actctcacta aagctaccac ccctgggatt gatgggatca ctacaaagtt actacaatct 3120 atttgggggc taatagctac acctgtacag aagctctttc aggcctgtgt ccaaacaggc 3180 tacttcccta ggaccttccg caaagcagag gttgttatga tccagaagct ggggaaaaca 3240 gacttctcaa agact 3255 // ID Gypsy-15_PSo-I repbase; DNA; PLN; 10080 BP. XX AC AAQY01000229; XX DT 12-FEB-2011 (Rel. 16.02, Created) DT 12-FEB-2011 (Rel. 16.02, Last updated, Version -1) XX DE LTR retrotransposon from the Phytophthora sojae genome: internal DE portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy-15_PSo_; KW Gypsy-15_PSo-LTR; Gypsy-15_PSo-I. XX OS Phytophthora sojae OC Eukaryota; stramenopiles; Oomycetes; Peronosporales; OC Phytophthora. XX RN [1] RP 1-10080 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the Phytophthora sojae genome."; RL Direct Submission to RU (12-FEB-2011). XX DR Genome; AAQY01000229; Positions 14125 4046. XX CC 'TTTG' target site duplication CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 2500..3867 FT /product="Gypsy-15_PSo-I_1p" FT /translation="MSTMEQKVQELEAEKERERESSKNIQRFHAGQVRDLR FT ATLAQVQARRATVAPDLATNVRSSVAQNPEVATRPHDSSGVINGNASVTGQ FT RRETADPKNSSEVAASQLRATLAQTSADTSGRIARVKRGHGATETKVTQDV FT KLEPVSLGKTSDPRKTATSKASQDSKTDSKRSAPKKHQQQQKKKRQDVNPP FT SDSDPSSDSSDDDSSSESSDDSSDGNPGVNLTTASTAQAGTTLLTFRPYIN FT SNTLGEFDTKASLRERVHWWEHFANMAAQRGWSTKMRIQELKLKVSGAARD FT WFNQLSKHTQRDWKELASAFRKKYCKARGGDPVRAGLKKAPELCVLVYVGP FT ELRTRTQDNQQCMTTLTQDFMTSPENQHPEQANAGSVNSEGIVEYKLNPGE FT RYGWWENNDPDPKKRDVAMVHGAVNDCRTRVLLDTGATVNIVSFDLARKLG FT LTLKSHKQTKV" FT CDS 4915..6060 FT /product="Gypsy-15_PSo-I_2p" FT /translation="MPGTPLEKLKQEYERCMRLSTEDLDYEPAVYIREGSE FT LLSQLRDQLVMLPEMRELTPECKIEEADVGVPGKTTPEMEDQVRRILEYHR FT KIFLEDGNAAPPPARGVVCVLDVGDAKPVAQRPRSIAPHLWTKVYELLKKL FT LENGLIKTSTSPWAYPIVIGLKKNGVDIRMCIDYRVVNGVIKLSHYPLSLI FT DDLLIGFESAMWFMSLDMASGFWAIKMTERAKLISAFVYPYGHYQWVRMPF FT GLKNAPLIYQAVLNNCLWGFLRLSPEEEAEVDQDVLDFLGLNSGKPRVSGA FT NAPRLSVLTDEMTIFQRNIPAPSQMGPVLGRSSYIDDIAHGAPTWEQLCQD FT LNMMLFRLRYWNISVSLPKSELGKLSIPYLSHSVPLSRD" FT CDS 7392..9095 FT /product="Gypsy-15_PSo-I_3p" FT /translation="MTRARTQEIEAQSEPMGPLEYQAERWRRIKVHQDKDD FT HLLQLKDFLKGDTTKLSHAQARKLAKVADDFVLDSREVLYRLSRSTRDRPR FT DMVDKLRLVVPKALRPYILHYPHEDFQGGHQGITRTYEKLRSEFYWHGMYA FT DVEVFVKECVDCASGKGRPQNPGPSPGNIEPRRPFEVVSMDFATHLPKSDR FT GNTFLLLFQDAFSGFVMCKPMSSTTAQDVAEVYEEQVFRRFGASSMLRHDQ FT DPRFMSDVFTRFHELLGSKQRATLAYRPQANGQQERSVQTVVRSIRAYIAE FT ADQSDWDDHAERLMFALNTSFDATRLDTPFFLVHGWDAHGTVSAMLGPRPS FT SIQERTAYKWRRKLQRGYSYAQACAEDLQKKTKRARSAEQTRKWRELSERL FT KAGFAAGDAVWQYIPKAQSRKLAHMWHGPFRIQEIHDNFRVKLRVKNTGYR FT VNPWVHVSRLKPRALFPKRPTVEIDVDEDDDFDATLLPEDSWEPDAANDEY FT EVERILDLRWTKRTRTARRIRAYLVKWKGYDETEWLPVSKLNCGALLYEFN FT QGARARARFQAMQAGDDHPGV" XX SQ Sequence 10080 BP; 2275 A; 2571 C; 3083 G; 2151 T; 0 other; gctggtgcgc gtgccccgat ttgattgtcg aggatttcac cggaatcaag tgttgaagaa 60 gtgttgagtg gccgtcaact tcaagctacc aagatgcctg gaggacgagg ggcgaagaag 120 agtggacgcg gtgaggcgtc acgtcagtcg cgtcgtgttc aaggtatgga gcctgaggag 180 cacaaggacc tggaaacagt cgtccgcgac gctcggaagg tgaagcaggc tgctcgcgag 240 agcgaggcag tgcaaggtgg ggacgtcgag gcgtctgcag tccaaggtca gcccgctgct 300 ggatcgcaaa ctcaggagga agaagtttcc cctgggttcc aaggttcgac ggaggtgaat 360 tctgggtcgc ggattcctga agtcccagag gagcacaccc gcgagggtgg tgctcaggcg 420 tctgagggag gcgccaatgc ggttgagccc ccggaggtga ttgacttggt ctcatcttcg 480 gacgagtctg ttgtggaagt gaagtcggag tccgtgcgag cgaaggagga ggcgaatact 540 cagagttcca aggtgaattc tgggttcgca ccacctgaac ccagagtttc agcgccaagt 600 tcgcaggcgg cacccaggaa gacgcctaaa agcgacaccc gggaagttgc tgcacctgct 660 ccggaatcga gagcagcggc gtttcgacgc cgggagcatg gtgctgtacg ttcgacgtga 720 agttcgacgc tgggaagagg tgaatcctgg gaaggtgacg ccgccaagtg tcgtttatga 780 gtggccgaca ccgaaacgga tgccaactcg tacttcgcgg ccgcgtacgc aacgggagac 840 tacctcaagt ggcgtttgtc tctggagaat caagatgaag cctggatctc tgagtttcac 900 ctcgtccggt ggggcgtcgg aactgctcag gatctcatgg cgactacgat tccccagagt 960 atcatgacca cccgcgagtg cgtcgccatt ctgcagactc tgttcttcga agccggattt 1020 gagtttgtca atttgatccc tggctggtct tcgacgcgtg cttccaggat tccagaaagt 1080 ctggtgcgct ctgtcatgga ggaaacccag catttcatcg ctgtggaact ggtcgagtgg 1140 agattggtga tagctggtgt gcctttcaag gtaaactctg aagatcacgc cgcaccaagc 1200 gcccaagagc aagcaccaag actggactac cacaaggaag atggagacgg tgatctattg 1260 atgacggact acgatgcgga tctactgggc cgacagtttg tcctgagatt cagagtcact 1320 ggacttagga tttcacggag cccacgaggg tcgagtgatg gtgagccatg atccaagcgt 1380 actcagcatg gaccgcctcg gccacaagtc ccgtcaacgc catccgcgct gtctacaccg 1440 tcgctgtcct ctcttccagc gtacaagtct tcgactggtg cctcgcttca gaattccact 1500 cccctgaatt ccatgtacaa tggacgtgat tctctggagg cggaagccaa ggacgctacc 1560 ccagacgcgg tgccaagtgt catcggtacc tcgcgcgctt cggatgagag tactgccttg 1620 ggcgttcaaa cgtcttatgg tagctcttcg tcttcgtcga tgatgtcgct tggacaacga 1680 gttggagctc tagcgcttgt ggcccagagt gccggtggct tcgcagctgc cggtgatctt 1740 ggatttcagg tcacccggac agtcatcccg tcgcgtcttg tgtcagtcga ccaagatgac 1800 gttgagatgg catcgtcggt gcactctgac ccagagattg cacccaggaa ggacggtctc 1860 cccaggattt cagccacgac ttccgagccg aaactcaggg tttctgcccc gattgctgga 1920 tttggtggtc caagggatgt cagcgccgat gagcggagtc aacaccagag ctctaagaac 1980 gaggtgcgct ctcgacgccc gacgaaatcc agaaaatcat ctgcgtcgag ccgctcgagt 2040 ggatccagga atcttgggtc agtttcgtcc gtgtccgcga ggtctgggcc cgcccaaatc 2100 gagctgaacg tcttgcgaca agagcaggag tggcaggccc gcatggaaca ggagcaacgc 2160 gagtttctcg ccagagaacg cctggatgcc ttggagcgcg agcgcctcag ggaataacgt 2220 gacctggacg cgcgtcgcca gatccaggaa cttacggatc gcttagccca cgctgagatc 2280 gcccgagaag cggaacggcg tgcgcaggac gtggaggctc gccagaccca gagttccact 2340 gaaactcagg ggatgaccca gagtatcacg aaagctgtac gtcttgagcg tgagcgcctg 2400 gatgccgcct acgccgagcg ctgacgacgg cacgaagccg aagccgactc ggagcgcgcg 2460 cgctgggttt ccgagaccta cgccggttgg aaggaacaaa tgtcaactat ggagcagaag 2520 gtccaagaac ttgaggcgga gaaagagcga gagcgggagt cttccaagaa tatccagcgc 2580 ttccacgccg gccaagtgcg cgaccttcgt gcaacattgg cccaagttca agcgcgtcgc 2640 gcaaccgtcg cccctgattt ggcaacaaat gtgaggtcgt cggtggctca gaaccctgaa 2700 gttgcaactc gaccccacga ttccagtggc gtaatcaacg gaaacgcaag tgtcacaggc 2760 cagagacggg agacagctga tccgaagaac agttccgaag tcgccgcctc ccagctaaga 2820 gcgaccctcg cgcagacttc cgccgacact tccggcagaa tcgcgcgcgt caagcgggga 2880 catggcgcta cggagaccaa ggtgacgcag gatgtcaagc tcgagcctgt gtctctgggg 2940 aagacgtcgg atcccaggaa aacagcgacc tctaaggcct cacaggactc taaaacagac 3000 tccaagcgct ctgcacccaa gaaacaccag cagcagcaga agaagaagcg tcaggatgtc 3060 aatccaccct cggactcaga cccaagctcc gattccagcg atgatgactc gtcctctgag 3120 agttcggatg acagttcgga cgggaaccct ggggttaacc tgacgacggc ctctacggct 3180 caagctggca ctacgctcct gacgttccga ccgtacatca actcgaatac tctgggtgag 3240 ttcgatacta aggcgtcact cagggaacgc gtacattggt gggagcattt tgcgaacatg 3300 gcggctcaga gaggttggtc tacaaagatg cgaattcagg aactcaagtt gaaagtctcg 3360 ggagctgcgc gtgactggtt caaccagttg tccaaacaca ctcagcgtga ctggaaggag 3420 ttggcgtctg cattcaggaa gaagtactgc aaagcgcggg gtggggaccc agtacgcgcc 3480 gggctgaaga aggccccaga gttatgtgtt ctagtgtatg taggcccgga gctgagaaca 3540 agaacccaag ataaccaaca atgcatgact actttgactc aggatttcat gacttcccct 3600 gaaaatcagc atcctgaaca agcgaacgct gggtcggtga actctgaagg aattgtggag 3660 tacaagctga accctggaga gcgctacgga tggtgggaaa acaatgatcc tgacccaaag 3720 aaacgtgatg tggcgatggt gcatggtgct gtgaacgact gccggacgag agttctcctg 3780 gataccggtg cgactgtgaa tattgtgagc ttcgacttag cgcgtaagct cggactcaca 3840 ctcaagtcgc acaagcaaac caaggtgtag gcgttccgac gtacatcggt gccagtcctc 3900 aggtgaagat tactctcgct tcgagggtga tatatctcct ggatgtctgg attgctaaca 3960 tcggcgaagg gatcgaagtt cttctgggta tgagtttcat gtttgcagct ggagtgagga 4020 tcagtgttcg cgaaggtctc gtgacacttc cggatgaaga ggcgatcatg atgtccagag 4080 gatcgcctgg gtgtcgacat gcccgtggaa accacaggta gttggtacct gacccctggg 4140 gaatccaagg tggtgaagat ctcgtatggg ccgacgaacc cacagcgtga tgttgtgtgg 4200 gcaggacgag gtgaccgctg ggtaacgcac ctgatttacg ctgcgagatc ctggccggtc 4260 gccgtgaagg tggtcaacat ctcggacaag gacgtctgga ttcacaacag aacgccagtc 4320 gcccgaattg tggagtacgg cttcttccca cgtgccggac gctttgtgcg ccctggttcg 4380 tttgcgtatc gggagtggca gacgcttatt ctggagagtg ttcagtcgcg tgagggcaga 4440 cttcgggcgg gacgcctggc tgcgcttaag ccatcctgtg tcgagacccc agagtatcaa 4500 tggcctacga agattctgcc gcgacctgca aagggccccg acatggcact gcttgcctcg 4560 attctcagga aaccgaagcc tcgtcacgtg cgcttcgctg aagacgctgc aactcagact 4620 gaaggagtgc ctcctgaaga ccctcctgaa ctccgagatg ttgttgttga tacgagtgac 4680 ttgggtgacg ttctgaacga ggcggtgacc gatgttgcct cgcagactgt cggaacccca 4740 gagggcatga gtcctgaagg tgacacggcc gctgaaaccc tgagtttaca ggttgaagtt 4800 ggcagtgatt ctcagggtca gtggtgcgac gaaggtgatt ctctgggatt cgatgtggat 4860 gacgacgatt ctcagggtgc tgtttaagat tactgggata tcctgatctc agggatgccg 4920 ggaactccgt tggagaagct gaagcaggaa tatgagcgct gcatgcggct atcgacagag 4980 gacctcgact acgagcctgc ggtctacata cgtgaaggaa gtgagttgct ctctcagttg 5040 cgtgaccagt tggttatgct tcctgagatg cgtgaattga cccctgagtg caagatcgag 5100 gaggcagatg ttggagtccc tgggaaaacg acgcccgaga tggaagacca agtgaggcga 5160 attctggaat atcatcggaa gatcttcttg gaagacggca atgcagctcc cccacctgcc 5220 cgtggagtgg tttgtgtcct ggatgtaggc gacgctaaac ctgttgccca gcgtccaagg 5280 tccattgcac cacacctgtg gactaaggtg tatgaacttc tgaagaagct tctggagaac 5340 gggctgatca agacttctac gtccccctgg gcatatccaa tcgtgatcgg cctcaagaag 5400 aatggcgtcg acatccggat gtgcatcgac tatcgcgtgg tgaatggcgt catcaagctc 5460 tcacactatc cgctgtcgct tattgatgat cttttgattg gctttgagtc ggcgatgtgg 5520 tttatgagct tggacatggc gagtggtttc tgggctatca agatgaccga gagagccaag 5580 ttgatctctg cgttcgtcta tccctatggg cactaccagt gggtcaggat gccgttcggc 5640 ctcaagaacg cgccgctgat ctaccaggca gttctcaata actgtctgtg gggatttctg 5700 cggctttccc ctgaggaaga agctgaggtc gaccaagatg tcttggactt tttagggttg 5760 aactctggga aacccagagt ttcaggtgca aatgcaccgc gactttcagt gttgacggat 5820 gagatgacta tttttcagcg taacatcccg gctccctctc agatgggccc tgtcctgggt 5880 cgaagctcgt atatcgacga catcgcccac ggtgcgccta cttgggagca gctgtgccag 5940 gatctgaaca tgatgctctt ccgactacgt tactggaata tctctgtgag tcttcccaag 6000 agcgaactcg ggaagttgtc cattccgtac ctctctcatt ccgtacctct ctcacgagat 6060 tagtgctgag ggcatccgag cgacccctaa aatcgcgaag ggggtccaag atttgccgtt 6120 cccgacgaca ctgaaaggcg tccagagttt catggggagt ctgaattact acaacaagtt 6180 cattgaagat ctacccgtga tcgcggccgt cttgtacgag ctgactgagg aacaagtgaa 6240 atccaggaga gacctgtcga gagccgagga agcctttgaa atcctgaagc acaagattgt 6300 ttcgactccg ttactcagac atcctgatcg ttcaaggccc ttcgtgatta ttccccacac 6360 gaacccgtgg gcaacatccg ctgtgttggg tcaggagtac gacgggatta tcacccggtc 6420 cgattcacag gtcgcgtcct gaatgacgct gatctgcggt atcacattgc ggaaaaggag 6480 gtgattgcta tcctgagggt cctggaaatg tttcgcactt tggttgaagg cagccctaag 6540 atcgtcgtct acacgcgata ttctctgttg aaatggttgc tgacatctca gtcggcagac 6600 ggtcgaacgg tgaagtggtc ccactggaac ctggagatac gcagagttca acgggatgaa 6660 gacggcttgg ctgcaattct aggtgcgggt attgccccca gagaacactt ggatgagatc 6720 gctgaaaacc tgatcccagc ctaggggcgc gttaaacctc cagtgcctat cagtatggaa 6780 atgctggaag cggactatga ggggtgtatt ctgagtttcg atggcgccgc tgagacttcc 6840 acgcgacaag ggagctgtgg ctgcattctg tggcatgtcc ctggttggga aatcctggat 6900 gcccagggat tcatcctgga ggacgtgact gtgaatgacg ctgagtatca tggacctgtg 6960 aagggctcac tctggcgatt gagcgtggaa ttcaggacat cgttgtggtt ggggactcca 7020 ggattgccat ccagcaagcc cagggtctca tcaactgcaa tcagccgaat ctccagagga 7080 agctggccga gtatgaagag ctgaagacga agttcaagtc tgtgcggctg gtgcatgtca 7140 agcgagagtt taaccaagcc gcagactacc tgacgtctaa gaccctcgcg cttggtgaat 7200 cctggaaggt ggaggatgct gacgaacgaa cacatctgca gttggtgtcc aagattcacg 7260 agaagttggt aagaccgaag gtgttattga acgttggaat tcaggggagt gattctcagg 7320 gtgtcgaaac tctgggtatc cctggacctg agtgcgctcc gttgcctgtg gcggccaaag 7380 tgtttgcagt aatgactcgg gcgcgaactc aggagatcga agcccaaagc gaacccatgg 7440 gacctctgga gtaccaggcg gaacgctggc gacgcatcaa agtgcaccag gacaaagatg 7500 atcacctgct gcaactcaag gatttcctga aaggagacac gacgaagctg tcgcacgctc 7560 aagccaggaa actcgcgaag gtcgctgatg atttcgtgtt ggattccaga gaagtcctgt 7620 accgcttgag tcggtctacc agagatcgac cccgagacat ggttgacaaa ctcagactcg 7680 tggtgccgaa agctctgcga ccgtatatcc tgcattaccc tcacgaagat tttcagggtg 7740 ggcaccaggg gatcacgagg acgtacgaga agctgcgctc tgagttctac tggcacggca 7800 tgtacgctga tgtggaagtt ttcgtcaaag agtgtgtgga ttgcgccagc ggcaaggggc 7860 gccctcagaa tccagggcct tcccctggga acatcgaacc gaggcgccct tttgaagttg 7920 tgtctatgga ttttgcgaca cacttgccta agtcggaccg tgggaacacg ttcctgctgc 7980 tttttcagga tgcgttctca ggtttcgtca tgtgtaaacc catgagttcc accacggcgc 8040 aagatgtcgc tgaagtgtac gaagagcagg tcttcaggag attcggcgcg agctcgatgc 8100 tgaggcacga ccaagaccca aggttcatga gtgatgtgtt cacgcgcttc catgaacttt 8160 tgggtagcaa gcagcgagcc acgctggcgt atcgccccca agcgaacgga caacaggagc 8220 ggtcggtgca gactgtcgtg cgcagcattc gagcgtacat tgctgaggca gaccagagtg 8280 actgggacga ccatgctgag cgcctgatgt ttgccctgaa tacatcgttc gatgccactc 8340 gcctggacac tccgtttttt ctggtgcacg gctgggacgc acacggcacg gtgtctgcaa 8400 tgttaggacc caggccctcg agtatccagg agcgcactgc gtacaagtgg cgcaggaagc 8460 tacagcgtgg ctatagttat gcacaagctt gcgctgagga tcttcagaag aaaaccaagc 8520 gcgcgcgctc tgccgaacaa accaggaagt ggagagagct gtccgaacga ctgaaggcag 8580 gattcgcagc cggtgatgct gtgtggcagt atataccaaa agcgcagagt cgcaaactgg 8640 ctcacatgtg gcatggcccc ttcagaattc aggaaatcca tgacaacttc cgcgtgaaac 8700 tcagggtcaa aaacacagga tatcgcgtga atccctgggt acacgtgagc cgtttgaaac 8760 ccagagcact attcccgaag cggcccactg tggagatcga cgtggacgag gatgatgact 8820 ttgatgcgac gctgttgcct gaagacagtt gggagcccga cgctgcgaac gatgagtacg 8880 aagttgagcg aatcctggat ttgcgatgga ctaaacggac tcggacagcg agacgaattc 8940 gtgcgtacct tgtgaagtgg aaggggtatg atgagaccga gtggctgcct gtgtcgaagc 9000 tcaactgtgg tgccctgctc tacgaattca atcaaggcgc aagagcgcgg gcccgtttcc 9060 aggccatgca ggctggagat gatcacccag gagtctagca ctctggggtg acaatgaccc 9120 agagttacac gtgatattca ggggagactc tgggtgacac tgtaaaactc tgggaaaaat 9180 cgacggaata tgtgaatatt ggagacggaa aacgtgaatg tgatttgact tgatttgatt 9240 atggagaagg ggatactgct gaggctttgg cagtgtgtga gaaggaagat gaaggcggcg 9300 agctctaccg gcagtttcca gtgcgggggg cgttcaggga ccaggaagtc agggggatcg 9360 acctcctcct gccgaagcat gcctgcgaag atagtctcct gacgtcctct agcgtcgcgt 9420 atcgtggtaa cttgaactca ggggcgccct ccatgtccac gtccggagcc acgtcgcctg 9480 cgtctggagc cttggactct gagttcgcgt caccagtttc ctgggttgca gcgtcagtcg 9540 aggcgttgcc atcggcctcg cgcatgtccg cgtcggaggt cttgccggtg gcgctggaga 9600 aggagacgcg cttggtcacg cccgtcttgg tgctgcccgt cgaagtgtcg ccagacgctg 9660 agtcacccgt ctggccgctg ccgccgcctg ctgatgcggt gctcgcaggg gcgtcgccgg 9720 tgcgctgctg tgtcggaggt ggcgcgctgc cggggagcgc cgtgccttga gctggcgccg 9780 tcgcttgctt gccgtccgaa gtcgtgctct ccgccatgtt gaatatttgc gaaatggcga 9840 tgtgaccgcg cattgcccgt tggagttttt gcgtttgaga ggagaacctt gaagataggt 9900 cctgaccacc cgttggggag acagggtgct gccaaagtga gtgaaaccct gggagtcgac 9960 agagtgcaac ggccgtatcg aggtcgacgg tggatagacc tgtgtgtttt tgtggcctgg 10020 ccatggttca ccagttcgga gcgatttcct ctttgatgga cccggaccag gaggggcggt 10080 //