No. words: 9018; after pruning: 5934


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:-3)  306  0.28 2.85 0.00  ca-21.s        6   356 (389)    ca-22.s        6   366 (399) *
Merge:(0)    0    0.0 4.5 (2,1:-1)  309  0.83 0.00 2.22  ca-22.s        7   366 (399)    ca-9.s        6   357 (385) *

Pass: 1
#reads  #contigs (not counting singletons)
    1      7
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:0)  439  1.09 0.00 0.00  va-1.x       16   472 (586)    va-23.x       16   472 (768) *
Merge:(0)    0    0.0 9.7 (1,1:1)  439  1.31 0.00 0.00  va-13.x       13   471 (549)    va-16.x       12   470 (555) *
Merge:(0)    0    0.0 9.3 (2,2:0)  444  0.85 0.21 0.21  va-1.x        5   473 (585)    va-13.x        5   473 (547) *
Merge:(0)    0    0.0 8.8 (3,1:452)  424  0.45 0.23 0.45  ca-9.s        6   447 (295)  C ca-9.r   (420)   449     9 *
Merge:(0)    0    0.0 8.8 (1,1:453)  420  0.92 0.23 0.00  ca-22.r       17   452 (408)  C ca-23.s   (255)   439     3 *
Merge:(0)    0    0.0 7.9 (4,2:453)  428  0.46 0.23 0.00  ca-9.s        6   443 (299)    ca-23.s        4   442 (252) *

Pass: 3
#reads  #contigs (not counting singletons)
    4      1
    6      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       6        0

Gap   # merges  # failures
 size
 0       6        0

Offset
  0      13 
  1       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singletons)
    4      1
    6      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1
    6    1

Chimera merges: 


Contig 2:  2786 nodes

 405 str. conn. components

Path
    1  C ca-22.r         860 
  397  C ca-9.r          462 
  401  C ca-22.r         460 
  409  C ca-9.r          450 
  412    ca-23.s           6 
  773  C ca-22.r          88 
  775  C ca-9.r           84 
  783    ca-21.s         377 
  811  C ca-9.r           48 
  816  C ca-22.r          45 
  823  C ca-9.r           36 
  833    ca-21.s         427 
  845    ca-23.s         439 
Contig length: old 1178, new 1100

Contig 1:  1248 nodes

 264 str. conn. components

Path
    1    va-13.x           1 
   15    va-1.x           16 
   18    va-13.x          18 
   26    va-23.x          27 
   29    va-1.x           30 
  114    va-16.x         113 
  434    va-13.x         434 
  451    va-16.x         450 
  455    va-13.x         455 
  463    va-1.x          463 
Contig length: old 1240, new 1058

Contig length: old 1058, new 475
New start: 0 

Contig length: old 1100, new 715
New start: 385 

Contig 1 unpadded => padded conversion:
  200 =>   201
  400 =>   401

Contig 2 unpadded => padded conversion:
  200 =>   200
  400 =>   407
  600 =>   607