/*****************************************************************************
#   Copyright (C) 1994-2008 by David Gordon.
#   All rights reserved.                           
#                                                                           
#   This software is part of a beta-test version of the Consed/Autofinish
#   package.  It should not be redistributed or
#   used for any commercial purpose, including commercially funded
#   sequencing, without written permission from the author and the
#   University of Washington.
#   
#   This software is provided ``AS IS'' and any express or implied
#   warranties, including, but not limited to, the implied warranties of
#   merchantability and fitness for a particular purpose, are disclaimed.
#   In no event shall the authors or the University of Washington be
#   liable for any direct, indirect, incidental, special, exemplary, or
#   consequential damages (including, but not limited to, procurement of
#   substitute goods or services; loss of use, data, or profits; or
#   business interruption) however caused and on any theory of liability,
#   whether in contract, strict liability, or tort (including negligence
#   or otherwise) arising in any way out of the use of this software, even
#   if advised of the possibility of such damage.
#
#   Building Consed from source is error prone and not simple which is
#   why I provide executables.  Due to time limitations I cannot
#   provide any assistance in building Consed.  Even if you do not
#   modify the source, you may introduce errors due to using a
#   different version of the compiler, a different version of motif,
#   different versions of other libraries than I used, etc.  For this
#   reason, if you discover Consed bugs, I can only offer help with
#   those bugs if you first reproduce those bugs with an executable
#   provided by me--not an executable you have built.
# 
#   Modifying Consed is also difficult.  Although Consed is modular,
#   some modules are used by many other modules.  Thus making a change
#   in one place can have unforeseen effects on many other features.
#   It may takes months for you to notice these other side-effects
#   which may not seen connected at all.  It is not feasable for me to
#   provide help with modifying Consed sources because of the
#   potentially huge amount of time involved.
#
#*****************************************************************************/
#include    "nNumberFromBase4.h"

int nNumberFromBase4[256];

void setNumberFromBase4() {

   

   int n;
   for( n = 0; n < 256; ++n ) {
      nNumberFromBase4[n] = nOtherMask;
   }


   nNumberFromBase4['a'] = nAMask;
   nNumberFromBase4['c'] = nCMask;
   nNumberFromBase4['g'] = nGMask;
   nNumberFromBase4['t'] = nTMask;
   nNumberFromBase4['*'] = nPadMask;

   nNumberFromBase4['m'] = nAMask | nCMask;
   nNumberFromBase4['r'] = nAMask | nGMask;
   nNumberFromBase4['w'] = nAMask | nTMask;
   nNumberFromBase4['s'] = nCMask | nGMask;
   nNumberFromBase4['y'] = nCMask | nTMask;
   nNumberFromBase4['k'] = nGMask | nTMask;
   nNumberFromBase4['v'] = nAMask | nCMask | nGMask;
   nNumberFromBase4['h'] = nAMask | nCMask | nTMask;
   nNumberFromBase4['d'] = nAMask | nGMask | nTMask;
   nNumberFromBase4['b'] = nCMask | nGMask | nTMask;
   nNumberFromBase4['n'] = nAMask | nCMask | nGMask | nTMask;

   // make the same for uppercase

   for( n = 'A'; n <= 'Z'; ++n ) {
      nNumberFromBase4[n] = nNumberFromBase4[n - 'A' + 'a'];
   }
   



}