No. words: 23808; after pruning: 19597 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Merge:(0) 0 0.0 21.5 (1,1:-11) 851 2.37 0.10 1.68 djs74-2689.s1 37 1049 (67) djs74-996.s2 51 1047 (121) * Merge:(0) 0 0.0 18.5 (2,1:69) 799 1.87 0.12 0.12 djs74-2689.s1 117 972 (144) djs74-2350.s1 47 902 (2) * Merge:(0) 0 0.0 18.4 (1,1:-74) 701 2.79 0.35 1.16 djs74-1803.s1 32 892 (10) djs74-1861.s1 108 961 (28) * Merge:(0) 0 0.0 18.3 (3,1:1021) 677 4.51 1.32 1.32 djs74-2689.s1 71 979 (137) C djs74-237.s1 (6) 950 42 * Merge:(0) 0 0.0 17.8 (4,1:937) 666 4.50 0.92 1.15 djs74-996.s2 44 909 (259) C djs74-1532.s1 (106) 900 37 * Merge:(0) 0 0.0 17.6 (1,1:151) 734 2.61 0.48 0.12 djs74-2679.s1 189 1030 (63) djs74-932.s1 37 881 (1) * Merge:(0) 0 0.0 17.5 (2,2:804) 730 1.13 0.50 0.00 djs74-1861.s1 42 839 (150) C djs74-2679.s1 (254) 839 38 * Merge:(0) 0 0.0 17.3 (5,1:837) 657 4.12 1.33 0.48 djs74-1532.s1 141 965 (41) djs74-1802.s1 39 870 (31) Merge:(0) 0 0.0 17.2 (1,1:36) 681 2.34 0.25 1.48 djs74-1871.s1 75 886 (107) djs74-2516.s1 39 840 (105) * Merge:(0) 0 0.0 17.1 (6,1:136) 738 1.78 0.38 0.00 djs74-2689.s1 174 961 (155) djs74-1180.s1 37 827 (0) * Merge:(0) 0 0.0 16.5 (4,2:558) 657 3.62 1.12 0.25 djs74-2679.s1 291 1091 (2) djs74-1871.s1 44 851 (142) * Merge:(0) 0 0.0 15.7 (7,1:-235) 660 1.39 0.28 0.42 djs74-1802.s1 182 901 (0) C djs74-2361.s1 (7) 890 172 * Merge:(0) 0 0.0 15.7 (6,1:471) 658 1.38 0.28 0.41 djs74-1871.s1 122 844 (149) djs74-3174.s1 34 755 (4) * Merge:(0) 0 0.0 14.4 (7,1:476) 548 5.34 0.29 0.58 djs74-2516.s1 81 773 (172) djs74-824.s1 35 725 (565) Merge:(0) 0 0.0 13.8 (8,1:23) 604 0.32 0.00 0.00 djs74-2679.s1 117 745 (348) C djs74-2231.s1 (167) 666 38 * Merge:(0) 0 0.0 13.5 (9,1:122) 569 0.00 0.00 0.33 djs74-2679.s1 40 649 (444) C djs74-2664.s1 (434) 643 36 * Merge:(0) 0 0.0 12.6 (10,1:49) 520 0.87 0.00 0.70 djs74-1861.s1 180 754 (235) djs74-690.x1 57 627 (0) * Merge:(0) 0 0.0 10.8 (11,1:165) 403 4.25 0.77 1.16 djs74-1871.s1 432 949 (44) djs74-1432.s1 39 554 (793) * Merge:(0) 0 0.0 5.1 (12,8:-1391) 198 2.13 1.70 0.43 djs74-1432.s1 578 812 (535) djs74-237.s1 42 279 (677) * Merge:(0) 0 0.0 3.4 (20,1:-524) 147 0.00 0.64 0.64 djs74-1432.s1 498 653 (694) C djs74-2931.s1 (966) 193 38 * Merge:(0) 0 0.0 2.0 (21,1:-1120) 85 0.00 0.00 0.00 djs74-2689.s1 315 407 (709) djs74-564.s1 44 136 (915) * Pass: 1 #reads #contigs (not counting singlets) 1 2 22 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 21 0 Gap # merges # failures size 0 21 0 Offset 0 37 1 42 2 17 3 7 4 7 5 2 9 1 Pass 3 Gap Score Merge:(0) 0 0.0 18.8 (22,1:830) 781 1.92 0.79 0.11 djs74-2679.s1 34 920 (173) djs74-561.s1 60 952 (143) Merge:(0) 0 0.0 16.8 (23,1:-800) 730 0.13 0.13 0.13 djs74-2361.s1 35 791 (106) C djs74-423.s1 (199) 792 36 * Pass: 3 #reads #contigs (not counting singlets) 24 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score 0.0 2 0 Gap # merges # failures size 0 2 0 Offset 0 5 1 5 2 4 3 1 4 1 5 2 6 2 7 1 Pass 4 Gap Score Pass: 4 #reads #contigs (not counting singlets) 24 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Read equivalence class histogram: 24 1 Chimera merges: Contig 1: 29924 nodes 2091 str. conn. components Path 1 C djs74-423.s1 991 203 djs74-2361.s1 38 219 C djs74-423.s1 773 239 djs74-2361.s1 74 263 C djs74-423.s1 729 278 djs74-2361.s1 113 371 C djs74-1802.s1 867 415 djs74-2361.s1 250 1016 C djs74-1802.s1 224 1194 djs74-2350.s1 720 1241 C djs74-1532.s1 101 1246 C djs74-237.s1 182 1259 djs74-1180.s1 718 1271 djs74-2350.s1 796 1273 C djs74-1432.s1 691 1300 djs74-2689.s1 893 1302 djs74-996.s2 906 1303 djs74-2350.s1 827 1330 djs74-2931.s1 57 1376 C djs74-237.s1 52 1379 djs74-2931.s1 106 1463 C djs74-1432.s1 501 1918 C djs74-561.s1 712 2543 C djs74-2679.s1 61 2550 djs74-2664.s1 629 2560 djs74-1803.s1 761 2572 C djs74-561.s1 58 Contig length: old 2989, new 2629 Contig length: old 2629, new 2591 New start: 0 I Change at: 271; seg lengths: entry 1, contig 0 Contig 1 unpadded => padded conversion: 200 => 200 400 => 400 600 => 606 800 => 813 1000 => 1014 1200 => 1215 1400 => 1419 1600 => 1630 1800 => 1843 1800 => 1844 2000 => 2047 2200 => 2247 2400 => 2447