LALIGN finds the best local alignments between two sequences
 version 2.0u4 Feb. 1996
Please cite:
 X. Huang and W. Miller (1991) Adv. Appl. Math. 12:373-381

 Comparison of:
(A) gde20260_6.seq1 >A38577, 189 bases, BDBFCCF2 checksum.             - 189 aa
(B) gde20260_6.seq2 >S48693, 238 bases, 5863A98A checksum.             - 238 aa
 using matrix file: /home/psgendb/dat/fasta/blosum50.mat, gap penalties: -12/-2

  24.1% identity in 87 aa overlap; score:   37

               10        20        30         40        50         
A38577 MFKGIVQGVGIIKKISKNDDTQRHGITFPKDIL-DSVEKDTVMLVNGCSVTVVRITGDVV
       : .: ::   :. : . :  : :  . :  : : . .:   . . .  .     : :  .
S48693 MPEGYVQERTIFYKDDGNYKT-RAEVKFEGDTLVNRIELKGIDFKEDGN-----ILGHKM
        90       100        110       120       130            140 

      60        70        80      
A38577 YFDIDQAINTTTFRKLEVGNKVNLEVR
        .. ..        : . : :::...:
S48693 EYNYNSHNVYIMADKPKNGIKVNFKIR
             150       160        

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  23.3% identity in 90 aa overlap; score:   35

       60        70        80             90        100       110  
A38577 VYFDIDQAINTTTFRKLEVGNKVN-LEVRP-GF---GSLLG-KGALTGNIKGVATVDNIT
       ...  :   .: .  :.:  . :: .:..   :   :..:: :   . : ..:  . .  
S48693 IFYKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKMEYNYNSHNVYIMAD--
       100       110       120       130       140       150       

            120       130        140 
A38577 EEEDLLKVYIKIPKDLIE-NISSEDHIGIN
       . .. .:: .:: ... . ...  ::   :
S48693 KPKNGIKVNFKIRHNIKDGSVQLADHYQQN
         160       170       180     

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  35.3% identity in 17 aa overlap; score:   34

             180        
A38577 LETGSEVNVETLNVSNE
       .:  ..:: . ..::.:
S48693 VELDGDVNGQKFSVSGE
          20        30  

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  37.5% identity in 16 aa overlap; score:   33

             50        
A38577 LVNGCSVTVVRITGDV
       : .:    .:.. :::
S48693 LFTGVVPILVELDGDV
         10        20  

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  23.1% identity in 26 aa overlap; score:   33

      20        30        40     
A38577 DTQRHGITFPKDILDSVEKDTVMLVN
       :  ..::     :  ...  .:.:..
S48693 DKPKNGIKVNFKIRHNIKDGSVQLAD
          160       170       180

----------

  29.0% identity in 31 aa overlap; score:   32

      70        80        90       100
A38577 TTFRKLEVGNKVNLEVRPGFGSLLGKGALTG
       : : : . . :.  ::.    .:...  : :
S48693 TIFYKDDGNYKTRAEVKFEGDTLVNRIELKG
        100       110       120       

----------

  33.3% identity in 24 aa overlap; score:   31

      90        100       110  
A38577 GSLLG-KGALTGNIKGVATVDNIT
       :.. : : ...:. .: ::  ..:
S48693 GDVNGQKFSVSGEGEGDATYGKLT
      20        30        40   

----------

  22.2% identity in 36 aa overlap; score:   30

       60        70           80        90 
A38577 VYFDIDQAINTTTFRKL---EVGNKVNLEVRPGFGS
       : :. :  .:   .. .   : :: .. ... ...:
S48693 VKFEGDTLVNRIELKGIDFKEDGNILGHKMEYNYNS
             120       130       140       

----------

  14.3% identity in 28 aa overlap; score:   30

            130       140       150
A38577 KIPKDLIENISSEDHIGINGVSNSIEEV
       : :..  ...   . .   :......:.
S48693 KDPNEKRDHMILLEFVTAAGITHGMDEL
      210       220       230      

----------

  18.5% identity in 27 aa overlap; score:   28

               10        20       
A38577 MFKGIVQGVGIIKKISKNDDTQRHGIT
       .: :.:    :. ... . . :. ...
S48693 LFTGVVP---ILVELDGDVNGQKFSVS
         10           20        30

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