# This file is part of the Biopython distribution and governed by your # choice of the "Biopython License Agreement" or the "BSD 3-Clause License". # Please see the LICENSE file that should have been included as part of this # package. """A superclass for reading [f]ixed-column type [f]lat-[f]ile records.""" class fff_rec(object): def __init__(self, inrec=''): """Initialize the class.""" self.data = inrec def __repr__(self): return str(self.data) __str__ = __repr__ def __len__(self): return len(self.data) def __getitem__(self, index): if isinstance(index, slice): return self.data[index] elif (isinstance(index, tuple) or isinstance(index, list)) \ and len(index) == 2: # Not sure if this is needed anymore: return self.data[index[0]:index[1]] else: return self.data[index] class align(object): """Definition of the align section in a FSSP file.""" abs_res_num = (0, 4) pdb_res_num = (4, 9) chain_id = 10 res_name = 12 ss1 = 15 turn3 = 17 turn4 = 18 turn5 = (20, 22) acc = (34, 37) start_aa_list = 42