Text : "Tutorial"
Text : "Web site"
Text : "FAQ"
Text : "Significance of alignments"
Text : "Built-in scoring matrices"
Text : "Related publications"
Text : "Repeat masking"
Text : "Seeding schemes for initial matches"
Text : "Optimizing speed, sensitivity and disk space"
Text : "Installation instructions"
Text : "Genome-Scale Sequence Comparison"
Text : "Read 2 fastq files, and write them interleaved"
Text : "Aligning bisulfite-converted DNA reads to a genome"
Text : "Create a dotplot from a last alignment"
Text : "Calculate a mismap probability for each alignment."
Text : "This is the probability\n\
that the alignment does not reflect the origin of the query sequence, assuming\n\
that one reported alignment does reflect the origin of each query."
Text : "Read files of lastal output, merge corresponding batches, and write them"
Text : "Read alignments of paired DNA reads to a genome"
Text : "and: (1) estimate the\n\
distribution of distances between paired reads, (2) estimate the probability\n\
that each alignment represents the genomic source of the read."
Text : "Get alignments that have a segment with score >= threshold, with gentle\n\
masking of lowercase letters"
Text : "Read alignments of query sequences to a genome, and estimate the genomic\n\
source of each part of each query, allowing different parts of one query to\n\
come from different parts of the genome"
Text : "last-Try to find suitable score parameters for aligning the given sequences."
Text : "finds local alignments between query sequences, and reference sequences that have been prepared using lastdb"
Text : "Prepare sequences for subsequent alignment with lastal"
Text : "Read MAF-format alignments & write them in another format"
Text : "Change the order of sequences in MAF-format alignments"
Text : "This script demonstrates using LAST and maf-join to construct multiple alignment of the human, mouse, chicken, and fugu mitochondrial genomes."
Package : "LAST"
Category : "Comparative Genomics"
File : "$doc\/last\/FAQ.html"
File : "$doc\/last\/last-evalues.html"
File : "$doc\/last\/last-matrices.html"
File : "$doc\/last\/last-papers.html"
File : "$doc\/last\/last-repeats.html"
File : "$doc\/last\/last-seeds.html"
File : "$doc\/last\/last-tuning.html"
File : "$doc\/last\/last-tutorial.html"
File : "$doc\/last\/last.html"
File : "http:\/\/last.cbrc.jp"
Program : "last-bisulfite-paired.sh"
Program : "last-bisulfite.sh"
Program : "fastq-interleave"
Program : "lastal"
Program : "lastdb"
Program : "last-dotplot"
Program : "last-map-probs"
Program : "last-merge-batches"
Program : "last-pair-probs"
Program : "last-postmask"
Program : "last-split"
Program : "last-train"
Program : "maf-convert"
Program : "maf-join"
Program : "maf-sort"
Program : "maf-swap"
Program : "multiMito.sh"
Program : "parallel-fastq"
Program : "parallel-fasta"