LOCUS NZ_ABVG02000015 8102 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum JW20 ctg266, whole genome shotgun sequence. ACCESSION NZ_ABVG02000015 NZ_ABVG00000000 VERSION NZ_ABVG02000015.1 GI:281419625 KEYWORDS WGS. SOURCE Clostridium thermocellum JW20 ORGANISM Clostridium thermocellum JW20 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ABVG02000015. FEATURES Location/Qualifiers source 1..8102 /organism="Clostridium thermocellum JW20" /mol_type="genomic DNA" /strain="JW20" /isolation_source="cotton bale" /db_xref="taxon:492476" /country="USA: Louisiana" gene complement(<1..2264) /locus_tag="Cther_0005" CDS complement(<1..2264) /locus_tag="Cther_0005" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: cpy:Cphy_2889 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250632.1" /db_xref="GI:281419626" /translation="MLGLLYIAVSWISGYLILKQLLPSIFDFTKSLSLTGKQVKLPAW MVTLPASFLTGTLLMTWTTYISAYLFRTTGEPMLYGNMTSFLIFSFIIIFFIAKDETD IPALFKSLKSVVSKIKDNSFLKSNVIEIAYVLAFLSIWTFLVIGSFNIKDGVMRIGWS VSSDFSTHLAVIRSFSYGSNFPSGYPHFADGNMRYHFMFMFLAGNLEFLGLRLDWAFN LPSILSIVSFLMLLYSFAVLLLGEKIIGVVTGILFFFRSSFAFFTFITGKPSIKEALK ELKNLKEHIGNTLNEEWGLYAQKVYVNQRHLPFVLGIMMLVLIVILPLFIKMMTSIGE LYQERVKKSDEEQMPDENKDSESFWKSYVKEFVFSKNAWIPESIFTSVVLGVILGLSS FWNGAVVIAALLVLFVMAVFSKHRLQYLIMASITVVLAYCQTQFFVKSGGSVVSPSIY IGFLANTNGLEQDLSRYFANNGLWATLEHFFKLIPYVTAFYIELLGLLPFIVAINLLS RNSKYKYHISLLFIAVTQVIGYFFIKYKLDSDDKIINKQLFTGSMLFALLLVVFACMA YMFYENSPVPRGTRALILAFSTPIIFASSVKLTLGVDINHKYVIIGSILVNIFVASFI FFLFKVKKPFATLVAVLVSVMITITGFADLKVLYNLNNSYVTINCDDPLLVKVKNDTG KDEIFLTDNYHLHPLLLSGRKIFCGWPYFVASAGYDWDLRNDIRRRILTATDQNTLKK LVEENNISYIVIDNG" gene complement(2313..2831) /locus_tag="Cther_0006" CDS complement(2313..2831) /locus_tag="Cther_0006" /inference="protein motif:PFAM:PF04138" /note="PFAM: GtrA family protein; KEGG: dhd:Dhaf_2536 hypothetical protein" /codon_start=1 /transl_table=11 /product="GtrA family protein" /protein_id="ZP_06250633.1" /db_xref="GI:281419627" /db_xref="InterPro:IPR007267" /translation="MLVNNILDRLKKYKFFSELLTPETFSQMKRYVITGFTGFAIEYA LFFSFYYYIFKRFFPAGYPLAKSIAENWFNYDLKADTYSYLFANAIAYVVVFWFNFLV NRIWSFKSKVNIFKQLGQYAVLFVFNLFATSALLWLLSDKIGIIPAISKVLVMGLVVC WNFVLYKKVIYK" misc_feature complement(2319..2744) /locus_tag="Cther_0006" /note="GtrA-like protein; Region: GtrA; cl00971" /db_xref="CDD:154117" gene 3182..4000 /locus_tag="Cther_0007" CDS 3182..4000 /locus_tag="Cther_0007" /inference="protein motif:PFAM:PF08241" /note="PFAM: Methyltransferase type 11; KEGG: rrs:RoseRS_4080 methyltransferase type 12" /codon_start=1 /transl_table=11 /product="Methyltransferase type 11" /protein_id="ZP_06250634.1" /db_xref="GI:281419628" /db_xref="InterPro:IPR013216" /translation="MCGSESSSLLYEINSYKYNKCNNCELVYLNPRLKEESLLEYYAQ DSFYAEYSSGTGYEIQERALRSTFSRYMKELHKRNVTGGKLLEIGCGFGFLLDEAKNY FDYRIGTDFSSEAVSHAKKYADNVYCGGLEAIPSDTSTKFDCVITFSVLEHVYNPNTF IQEIQNYMAPNGSLVVSTPFIGGMWYKILGKKWPFFIPPEHVCLYNHNSISQLLKQNG FKNIEMFISSHAWPVAGFLSKMGMRKLSSMTLKLKIGDVPLFVPFTIINIIGSK" misc_feature 3431..3712 /locus_tag="Cther_0007" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)...; Region: AdoMet_MTases; cd02440" /db_xref="CDD:100107" misc_feature order(3443..3463,3509..3514,3566..3574,3623..3625) /locus_tag="Cther_0007" /note="S-adenosylmethionine binding site; other site" /db_xref="CDD:100107" gene complement(4259..6154) /locus_tag="Cther_0008" CDS complement(4259..6154) /locus_tag="Cther_0008" /inference="protein motif:PFAM:PF00395" /note="PFAM: S-layer domain protein; KEGG: pjd:Pjdr2_0698 outer membrane adhesin like proteiin" /codon_start=1 /transl_table=11 /product="S-layer domain protein" /protein_id="ZP_06250635.1" /db_xref="GI:281419629" /db_xref="InterPro:IPR001119" /translation="MAKGSGTLSVSINEYSYSVGNNVRIVCYNDIAFEKGDVFTVTVP AFRSDEFSDAALNGSKVEYLLVDKKGNVIAPDISLSGADAENAYFDINVYGDGYGFVF GSERISLGDYAEITAVLYQGYEFEGWYVEGKKISSEANYRFRPEKDMDIYAKFMPNDI FTQNVKVKVKTDKNKYAVGETVKVDGIITNMHPSETMKDVQVITVVYDEVEHKRWENN KSGLTLAQGESKIESAIWSTENAKPGKYKVEVAAYISKGNTPVFIFDEVEFEIVEEKT AQTTPDPTVTSTPENDEESEDSEERQMQKDIFILVTTDKRIYSGNDVITYKVEYYNLT DSQTGEFELSTQVPTYTEVLEAGRGVVEGNTIKWKISNLNKNGSGEITYKVKINEIPN SEVKIKNKFEVKDEKLINPKNALSTIEGMARTGRHGNIIHKSYINGYPDNSFKPDNHI TRAEIATILANVMGLSVPDNIEETGFKDVDKNHWAARYIKAVTDAGIFKGYEDSTFRP NETISRAELATVIFKCLGLDEKKAVKSSFTDTKGHWASDFIEEVSRNKIIRGYEDGSF KPNGKVTRAEAVVMINNMLYRDPINVDSSKFTDLDKKHWAFGHIEAAAGDYEFKIDED GGKVLVN" misc_feature complement(4787..>4852) /locus_tag="Cther_0008" /note="S-layer homology domain; Region: SLH; pfam00395" /db_xref="CDD:144111" misc_feature complement(4601..4729) /locus_tag="Cther_0008" /note="S-layer homology domain; Region: SLH; pfam00395" /db_xref="CDD:144111" misc_feature complement(4421..4549) /locus_tag="Cther_0008" /note="S-layer homology domain; Region: SLH; pfam00395" /db_xref="CDD:144111" gene complement(6214..6492) /locus_tag="Cther_0009" CDS complement(6214..6492) /locus_tag="Cther_0009" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250636.1" /db_xref="GI:281419630" /translation="MNRFKNKEKVLSVLLILSIFFSFVPFASYADGLSNYKEDYATST GENFTPASTRVVKINCPIDVEVYNSKNALVVSIIDDEPQDIPESSIIL" gene complement(6546..6878) /locus_tag="Cther_0010" CDS complement(6546..6878) /locus_tag="Cther_0010" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250637.1" /db_xref="GI:281419631" /translation="MTESSPLIPKEGEPLKYFENKERYLGYAKEGEKERVWYLCTPYF GDSGDGVWVVGMGGSLGRKGIAYFGESDGLSKSSVRPAFCLSNSLLIEESAEVIQGET VYVIKNER" gene complement(7440..>8102) /locus_tag="Cther_0011" CDS complement(7440..>8102) /locus_tag="Cther_0011" /inference="similar to AA sequence:KEGG:Ccur_03560" /note="KEGG: ccu:Ccur_03560 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250638.1" /db_xref="GI:281419632" /translation="KPGMYTFSGTWNDGQILVDIGKEFEAVLVLDGVNITNTKSAPIY IKSAEKVKIELADGKDNVLTDAEFYEFEDPQDNKPNACIYSRDDITIKGNGDLTVNAN FNNGIGTSNDLKITGGNITVKAFNNGLKGNDSVTISGGNIDITAEADGIKVENTEEPH KGYVNITGGTIKIRAKDDAIDSVRSVSINNADVKVSVGGKDVKCEGVLNIAEGCLGKL EE" ORIGIN 1 ccgttgtcaa taactatgta actgatattg ttttcctcca caagtttttt aagtgtgttt 61 tggtcagtgg cagtaagaat tcttctcctt atgtcattcc gaagatccca gtcgtaacct 121 gcagacgcca caaaatacgg ccaaccgcag aatatctttc tacctgacag aagcagagga 181 tgaagatggt aattatccgt caggaaaatt tcatctttgc cggtatcatt tttcactttc 241 accaacaaag gatcatcaca attgattgta acataagaat tgttaagatt gtaaagcact 301 ttcagatccg caaaacctgt aattgtaatc atcacggaaa caagtacagc cacaagggtg 361 gcaaaaggtt tttttacttt gaaaaggaag aatataaaag atgccacaaa aatatttaca 421 agtatggaac caataatcac atatttatgg tttatatcaa cgcctaatgt cagcttgaca 481 gagcttgcaa agataatcgg agtgctaaat gccagtatta acgcccttgt cccccggggc 541 acgggagaat tttcgtaaaa catatatgcc atgcatgcaa acaccaccaa cagcaaagca 601 aacagcattg aaccagtaaa aagctgcttg tttataattt tgtcgtcact gtccagtttg 661 tactttatga agaagtagcc aataacttgt gtcacagcta taaacaacaa gcttatatga 721 tatttgtatt tgctgtttct tgagagcaaa tttatggcca caataaaagg aagaagtccg 781 agaagttcaa tataaaaagc cgtaacgtaa ggaatcagtt taaagaaatg ctcaagtgta 841 gcccacaaac cattattcgc aaaatatctg gacaaatctt gttccagccc gttggtgttt 901 gccagaaaac caatatatat gctgggtgaa accacagaac cgccgctttt tacaaaaaat 961 tgagtctggc aataagccaa cacgacagta attgacgcca taatcagata ctgaagtctg 1021 tgtttcgaga aaacagccat aacaaaaagc actaaaagcg ccgctataac caccgctcca 1081 ttccaaaaac ttgaaagccc aagaataacc cccagcacca cagatgtaaa tatactttcc 1141 ggaatccacg cgtttttact gaaaacaaat tctttaacat atgatttcca aaaactttca 1201 gagtctttgt tttcatcggg catttgttct tcatcggatt ttttcactct ttcctgataa 1261 agctcgccaa tgcttgtcat catcttaata aacaaaggaa gaatcactat cagaacaagc 1321 atcataattc ccaatacaaa aggcaaatgc cgctgattta cataaacctt ctgcgcataa 1381 agtccccatt cttcattcaa cgtattacca atatgttctt ttaaattttt taattctttc 1441 aaagcttctt ttatcgaagg ttttcccgtg ataaaagtaa agaaagcaaa ggaacttctg 1501 aaaaagaaca atattcccgt cacaactccg ataatttttt cgcccagcag cagcacggca 1561 aatgaataaa gcagcatcaa aaatgaaacg atcgacaaaa ttgacggcag attaaacgcc 1621 cagtcaagtc ttaagcctaa aaactccaga tttcccgcca aaaacatgaa cataaaatga 1681 tatctcatat taccgtctgc aaagtgaggg tatcccgagg gaaagttaga accataggaa 1741 aaagacctaa tcaccgcaag atgggttgaa aaatcacttg agactgacca tccaattctc 1801 attacaccgt cttttatgtt aaaagaccca atcaccaaaa atgtccatat gctcaaaaaa 1861 gccaaaacat aagcgatttc aataacgttg cttttcaaaa acgaattgtc ttttatcttt 1921 gaaactacag attttaacga tttaaataaa gctggaatat ccgtttcgtc ttttgcaatg 1981 aaaaagataa taataaatga aaaaatcagg aaggaagtca tattgccata caacattggt 2041 tcgccggtcg ttctgaacaa ataggcactt atatatgtgg tccatgtcat taaaagtgtt 2101 cccgtcaaaa acgatgccgg aagtgtaacc atccatgccg gcagttttac ttgttttcca 2161 gttaatgata aagattttgt aaaatcaaat atggaaggca gcaattgttt caaaataaga 2221 tatccactta tccatgaaac cgcaatatat aaaagtccaa gcatcaagca ttctctcctt 2281 gcaaaaattg attattacaa atcttcttca ttctatttat aaataacctt tttgtacaga 2341 acaaaattcc agcataccac caaacccatg accagaacct tggaaatggc aggaataatg 2401 ccgattttgt cacttaaaag ccataataac gcgctggtgg caaataaatt aaaaacaaat 2461 aagacagcat actgtcccaa ctgtttaaaa atattgactt ttgatttgaa tgaccaaatc 2521 ctgttgacaa gaaaattaaa ccaaaaaaca accacatagg caattgcatt cgcaaacaga 2581 tagctgtatg tatcggcttt caaatcataa ttaaaccagt tttccgcaat gcttttcgcc 2641 aaagggtatc ctgcggggaa aaacctttta aaaatataat aataaaatga aaaaaacagc 2701 gcgtattcaa ttgcaaagcc tgtaaaaccc gtaatcacat atcttttcat ttgagaaaag 2761 gtttcagggg tcaatagttc tgaaaaaaat ttgtactttt taagcctgtc caatatattg 2821 tttactaaca taaactcccc caactgttaa aaagtaaaac tgctttagtt caattatagc 2881 aatttacata caataaatca aattaaaaaa ttcaactgaa gtgaaattgg accttgcttg 2941 tttttttaat gtaaaaaagc atactaatca aaatttcgca aaaatgataa agaaattgac 3001 tttcaaggca aaagaaagta aaattgataa tataagcatt tacgccacca tacattaaac 3061 tatgtgccaa aactgacagt ccgtattttt ttacaggaaa attgtcaaag gcggtgaaat 3121 taatatatca ttcaaagaat acttttccga cacggattct tttgaaaata ctccatgtcc 3181 tttgtgcggc agtgaatcaa gcagcttact gtatgaaata aattcatata aatataacaa 3241 atgcaataat tgtgaactgg tatatctaaa tcccaggctt aaagaagagt ccttgctgga 3301 atactatgca caagacagtt tctatgcgga atatagctcg gggaccggct atgagataca 3361 ggaaagagca ttgcgcagta ctttctccag gtatatgaaa gaattgcaca aaagaaatgt 3421 aaccggcgga aaacttctgg aaattggatg cggctttggt tttttgctgg atgaggcaaa 3481 aaactatttt gattatagaa tcggtacgga tttttccagc gaagccgtaa gtcacgcaaa 3541 aaagtatgcg gataatgttt attgcggcgg acttgaagca attcccagtg acacctcaac 3601 caaattcgac tgtgtaataa cgttcagtgt tctcgagcat gtttacaacc ccaatacctt 3661 tatccaggaa atccaaaatt atatggcgcc aaatggctct ttggttgttt ccactccttt 3721 tataggcggg atgtggtaca aaatattagg aaaaaaatgg ccgtttttta ttcctccgga 3781 acacgtttgc ctgtataatc acaattcaat atcacaatta ttgaagcaaa acggtttcaa 3841 aaacattgaa atgtttatct cttcacacgc ctggcctgtt gccggatttt tatcaaaaat 3901 gggaatgcgc aaactaagtt ccatgacact aaagctcaaa atcggagatg ttccgctttt 3961 tgtgcctttt acaataataa atattatcgg ctccaaataa ttttgaccac aggatttgca 4021 agtgaatctg acgtattctg gaacttccag aaaaggtaaa actacaacat gaataaaaat 4081 gatttaagaa aaactttgca tataagagaa ttaaaaatct cctccttgtg tgaaaattgc 4141 aaaacaacac caagaaggag atttttatag cggcattatt atcttttgca caacattatt 4201 aaaaaatgtt ttaaaaccca attttcaact ttctttcagg ctttggtttt cgtaacaatc 4261 aattaacaag tactttgccg ccgtcctcat ctattttaaa ctcataatct ccggccgcag 4321 cctctatatg tccaaaggcc caatgtttct tatccaaatc cgtaaattta cttgagtcta 4381 catttattgg gtctctgtac aacatattat taatcataac aaccgcttcc gcccgggtaa 4441 ccttgccgtt tggtttaaaa cttccgtctt catatcctct gattatcttg tttcggctga 4501 cttcttcaat gaaatccgat gcccaatgtc cctttgtatc tgtgaagctt gattttacgg 4561 cctttttctc atccaagccc aggcacttaa atataaccgt tgccagttcc gccctgctta 4621 tggtctcatt cggtctgaaa gttgaatctt catatccttt gaaaataccg gcatcggtta 4681 cagcttttat atatcttgcc gcccaatggt ttttatccac atctttgaac cctgtttctt 4741 ctatattgtc cggaacggaa agtcccataa catttgccaa tatggttgct atttctgctc 4801 ttgttatgtg attgtcaggt ttgaatgaat tatccggata tccatttata taggatttat 4861 gaattatgtt tccatgcctt cccgtcctgg ccatgccttc aatggttgat aatgcatttt 4921 taggattaat cagcttttca tcttttactt caaatttgtt ctttattttt acttcagagt 4981 tgggtatctc attaatcttt actttatacg ttatttcacc ggacccattt ttattcaaat 5041 tcgatatttt ccactttatt gtattgcctt cgactactcc gcgaccggct tccaatactt 5101 ccgtatatgt aggaacctgg gtggaaagtt caaattcgcc ggtttgtgaa tccgttaaat 5161 tgtaatattc aactttatat gtaatcacgt catttcccga atatattctc ttatccgtag 5221 tcacaaggat aaaaatgtct ttttgcatct gtctttcttc actgtcttca gactcttcgt 5281 cattttcagg agtcgaagtc acggtaggat caggtgttgt ttgggctgtt ttctcttcaa 5341 ctatttcaaa ttcaacttca tcaaaaataa aaacgggtgt gttgcctttt gatatataag 5401 ctgcgacctc aactttatac tttcccggct ttgcattttc tgttgaccag atagcactct 5461 caatttttga ttcgccctgt gccaaagtca aaccggattt attattttcc catcttttat 5521 gttcaacttc atcataaact acagtaatta cctgaacatc tttcatcgtt tcgctgggat 5581 gcatatttgt tataattcca tctactttta ccgtttcacc tacagcatat ttgtttttat 5641 cagtttttac ctttaccttg acattttgtg tgaaaatatc attaggcata aatttagcat 5701 atatatccat gtctttttcc ggtctgaagc gataattagc ttccgatgat atttttttac 5761 cttccacata ccaaccttca aattcatatc cttggtaaag aacggcagtg atttcagcat 5821 aatcgcccaa acttattctt tcacttccaa aaacaaaacc gtaaccatcg ccgtatacat 5881 taatgtcaaa atatgcattt tcagcgtcag cacctgaaag agaaatatcc ggagcaatta 5941 catttccctt tttatcaacc agcaaatatt caactttaga accatttaat gccgcgtccg 6001 aaaattcatc tgaacggaac gccggcacgg taaccgtaaa tacatcccct ttttcgaaag 6061 caatgtcatt atagcacact attctcacat tatttccgac agaataacta tactcattaa 6121 tcgaaacgga caaggtaccg gaacctttag ccatgagttt tacactatag ttaccatttg 6181 ccggaagata aataattttt ttaccctctt caactagaga ataatgctgc tttccggaat 6241 gtcctgaggt tcatcgtcta ttatagaaac tacaagcgca ttttttgaat tatatacttc 6301 aacatctatc ggacagttaa tttttacaac tcttgttgaa gcaggggtaa aattctcacc 6361 ggtgcttgtg gcataatctt ctttataatt tgacaatcca tccgcataac ttgcaaatgg 6421 aacaaatgaa aagaaaattg acagaattaa taaaacactt aaaacctttt ccttgttttt 6481 aaacctattc atcttaatct gcccgtttaa ataaattgat tttttgattt tgctattttt 6541 acaatttacc tttcattttt tatcacatat actgtttctc cctgtatcac ctccgcactt 6601 tcttctatta acaatgaatt gctgagacaa aatgccggcc ggacactgga cttcgacaat 6661 ccgtcagact ctccaaagta tgcaattcct ttacgaccta ggcttcctcc cataccaacc 6721 acccatacac catcaccgct gtctccaaaa tatggcgtac ataaatacca aaccctctct 6781 ttttctcctt cttttgcata accaagatat ctttctttat tttcaaaata tttaagtggt 6841 tccccttctt taggtatcaa aggagagctt tctgtcaatc ctactcaaac tcattaagct 6901 ttttcagttg atagatgctg tgtctataat aaatttattt aaaaatgtaa aaaaatgttt 6961 ttattacaac cataataatg ccttttgaaa ataactgatg tattcactaa aaatatcata 7021 tttttcctct ttgcttaaca aaactaattg ctcaaacttt tcacataaaa gcggatagcc 7081 tgtccaattt ttcgtagaac ttcttccact tctttatcca acattgattt cagaacctgt 7141 attccaacaa cacatctttt attataattt ttatacagtt attatatttt ttatagaatt 7201 taaagccaat cgcatccatt aactgaatta ttttgctaaa tacaatatcc tttgtctgat 7261 atgtgtccaa ataaaaataa gattataaga aatagcattt ttcttataat cttatttcaa 7321 taatatatca aatactttag cacttacctt ttcactttca aaaatcaatt atactatgtc 7381 tgaccaagtt tccctgccaa agacttatat tccgcctttc aagcccagag ccattacttt 7441 tattcctcca gcttaccaag gcagccttca gctatattca aaacaccctc acactttaca 7501 tctttgcccc cgacacttac tttaacatcc gcattgttaa tgctcacact tctaacactg 7561 tctattgcat catcttttgc cctgattttt atcgtacctc cggttatatt tacatatcct 7621 ttgtgaggct cctccgtatt ttccacctta atcccatcgg cctctgccgt aatatcaata 7681 tttccaccgc ttattgtcac actgtcatta cctttcaggc cgttattaaa agctttgacg 7741 gtaatatttc cacctgttat tttcaaatca ttgcttgtac cgataccatt gttaaaattg 7801 gcgttaactg tcaaatcccc attacccttt atagtaatat catctctgct gtaaatacat 7861 gcatttggtt tgttatcctg aggatcctca aattcataga attcagcatc cgtcaaaaca 7921 ttgtctttac cgtccgccaa ctcaattttt accttttcgg cgctctttat gtatattgga 7981 gctgattttg tatttgtaat gtttacccca tcgagtacca aaacagcttc aaattctttg 8041 ccaatatcga ccaatatttg gccgtcgttc catgttccac taaacgtata catccctggc 8101 tt //