LOCUS NZ_ABVG02000016 6455 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum JW20 ctg295, whole genome shotgun sequence. ACCESSION NZ_ABVG02000016 NZ_ABVG00000000 VERSION NZ_ABVG02000016.1 GI:281419633 KEYWORDS WGS. SOURCE Clostridium thermocellum JW20 ORGANISM Clostridium thermocellum JW20 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ABVG02000016. FEATURES Location/Qualifiers source 1..6455 /organism="Clostridium thermocellum JW20" /mol_type="genomic DNA" /strain="JW20" /isolation_source="cotton bale" /db_xref="taxon:492476" /country="USA: Louisiana" gene complement(<1..1866) /locus_tag="Cther_1172" CDS complement(<1..1866) /locus_tag="Cther_1172" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250639.1" /db_xref="GI:281419634" /translation="MRRRISYIIFFLLIIQNIFSYSFCGHGIANAQTPKVEVLIEGVD EEPKGKIIGVYGPITKGVELWHYSGGYWGYKGLIIKDEDLNGDINDEESLEKAINEEI EFDYTIDSELYKRLIEEGDIKVVCSTTLKDEKTMGNKLISDLFYGRPTIEIKNGKIYF SAKPKFHFFKKEDVSFQKIIGEKLNVRIPIVDPDYGYNTYAIWKRTKPEDWGGAVGYF DKNDIFAFAPPESGKIAPAQIKNSSGHLIEGFTFKTGTITRKSEESSVGYGTFKNGGA VGIHFDYPIKFTFYSAKEPRDFSVRFETIPQSAAKGDPVIVSAVINSAFINEQKTNFR WEITPVKNRKLDVKYIDKDGGTEEQGEINVFPEGDERGDHIFYAVFTMPDCDVDVKFI VNEDGTNPEEDDLENNVASATIELVETFNNLEIINLPYDALSRDISFKLAGENEIKAQ LRLPRGSWDGNAKGELKVTNENNDLLHKFEVKDNPKVNEDSETIIRKPIINAQIQRSD FGDNPSKKIYLDVADPTKPIQKKTSVTYNGNVERDYTYREYCDREENCTGHPVSSTTS AAFNNGIHEVQINTYVYNGKKDLKKKEYENKIGNNYDKDFKAKILWTNSPIKFDVI" gene complement(1888..2859) /locus_tag="Cther_1173" CDS complement(1888..2859) /locus_tag="Cther_1173" /inference="protein motif:PFAM:PF07833" /note="PFAM: copper amine oxidase domain protein; KEGG: nth:Nther_1077 N-acetylmuramoyl-L-alanine amidase" /codon_start=1 /transl_table=11 /product="copper amine oxidase domain protein" /protein_id="ZP_06250640.1" /db_xref="GI:281419635" /db_xref="InterPro:IPR012854" /translation="MKRIARILTLALIVTFLLTLPISAVELPIRVVVNGTKINFPDAE PFIDENSRTQVPIRFVGEALGADVSWDGNTKKVTITLNGKKVVLQIGNKNYEVNGQQK QMDTVALLKESRTFVPVRFVSEALGATVKWNANIRTVYIDMNGDVAPSPEPTGGTVKY YDGIAFNDVTDVDQYGRIKVDKLKEFLLKLADQLRFVKENGKYYIECTYPEIPEGYKW SLGITIYNKDGTNDGYSPVGRNPEWLIPAKGSFKKEATVVTDIKNVKLFNIVISLDHV ETGSLGILNIVYYMDKSEMRAKFVPESGIIPSENYSETFDFNKMFQW" misc_feature complement(2437..2715) /locus_tag="Cther_1173" /note="Copper amine oxidase N-terminal domain; Region: Cu_amine_oxidN1; pfam07833" /db_xref="CDD:149091" gene complement(2910..3479) /locus_tag="Cther_1174" CDS complement(2910..3479) /locus_tag="Cther_1174" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_06250641.1" /db_xref="GI:281419636" /translation="MVRVKSILIVVIVCAVFLLSACGKSEEGSNQPSSTQNSNSIQTV PETENKEEKTNAEKFLEYAIKAADLRNFTKTGNYAGVMTTLHDIYEEDIVNPYTGGKM LYVMNRTRTYLKNSDASVTRGLGVDCIVVDDYMTQLKKLDTSEVTYCVNPESKGMVIA IWLIDGVYIYEIDENGQKINEIKHFFEKE" gene complement(3516..>6455) /locus_tag="Cther_1175" /pseudo ORIGIN 1 tattacatcg aatttgatgg gactgtttgt ccatagtatt ttcgctttaa agtctttgtc 61 ataattattg cctattttat tttcatactc ttttttcttc aaatcctttt tgccgttgta 121 gacatatgta tttatttgaa cttcatgaat accgttatta aatgctgccg aagttgtact 181 actcaccggg tgtccagtac aattttcttc tctgtcacag tattccctgt acgtataatc 241 tctctcaaca ttaccattat aagtaacact tgttttcttt tgaattggtt ttgtgggatc 301 agccacatcc aagtatattt tctttgaagg attatcccca aaatcacttc tttgtatttg 361 ggcgtttatt attggttttc ttataattgt ttcgctgtcc tcatttactt tagggttatc 421 ttttacttca aatttgtgca ataggtcatt attttcattg gttactttta gttcaccttt 481 ggcgtttcca tcccaactac ctcttggtag tctgagttgt gctttaattt cattttctcc 541 tgcaagctta aaagaaatat cccttgacaa agcatcatat ggcaagttga ttatctctaa 601 attgttgaat gtctctacaa gttcaatcgt ggcacttgcg acattatttt ctaaatcgtc 661 ttcttccgga ttggttccgt cttcattgac tataaatttt acatctacgt cacaatccgg 721 catagtaaaa acagcataga atatatggtc gcctctttcg tcaccttccg gaaaaacatt 781 tatttctccc tgttcttcag ttccgccgtc tttgtcgatg tattttacat ctaattttct 841 attctttaca ggtgtgattt cccatctaaa attggtcttc tgctcattta taaaagcaga 901 attaattaca gccgaaacaa tgacagggtc tccctttgct gcactttgag gtatagtctc 961 aaaacggaca gagaagtccc ttggttcttt tgctgaataa aatgtaaact tgatggggta 1021 gtcaaaatgt attccaactg ccccaccatt cttaaacgta ccatatccta cagaggactc 1081 ttcggatttt cttgtaatcg ttcctgtttt gaatgtaaat ccttcaatca agtggcctga 1141 tgaatttttt atttgtgccg gtgcaatttt cccggattcg ggaggtgcaa aagcaaatat 1201 atcatttttg tcgaaatacc ctacagctcc tccccaatcc tccggtttag ttctcttcca 1261 aattgcgtat gtattgtatc cataatctgg gtcaactata ggtattctaa catttaattt 1321 ttctccaatt attttttgaa aagacacatc ttccttttta aaaaaatgga atttaggttt 1381 agctgaaaaa taaatttttc catttttaat ctctatagtt ggcctaccat aaaacaaatc 1441 cgaaatcaac ttatttccca tagttttttc atcttttaat gttgttgaac atacaacttt 1501 tatatctcct tcttctatca atcttttgta tagttcagaa tctatagtgt aatcaaattc 1561 aatctcttca ttaattgctt tctcaagaga ttcttcatcg ttaatatcac catttaaatc 1621 ttcatccttt attattaaac ccttgtaccc ccaataacca ccactataat gccataattc 1681 aacccctttt gtaataggcc catatacacc gattattttt cctttcggtt cttcatctac 1741 tccttctatg agtacttcaa cttttggagt ctgtgcattt gctataccat gaccacaaaa 1801 gctatatgaa aaaatatttt gaattatcag cagaaaaaat ataatatagg aaatcctcct 1861 acgcattaca tttcccccta attcactcta ccattggaac attttattaa aatcaaatgt 1921 ttccgaataa ttctctgaag gtataatccc tgactctggt acaaacttgg ctctcatctc 1981 tgacttatcc atatagtaaa ctatattcaa tattcccaag ctgccagttt ccacgtgatc 2041 caatgaaatt acaatattaa ataacttcac attttttata tcagtaacaa ctgtagcttc 2101 ttttttaaat gaacctttgg ctggtatcaa ccattcagga ttacgcccaa ctggagaata 2161 tccatcgtta gttccatctt tgttatagat agtaatacca agactccact tatatccttc 2221 tggtatttct ggatatgtgc attcaatata atattttccg ttttctttta caaatctcaa 2281 ttgatccgct aacttgagca aaaactcctt taatttatca acttttattc ttccatactg 2341 gtcaacatcg gtaacatcat taaatgctat tccgtcataa tatttcactg ttccccctgt 2401 cggttcagga gaaggtgcta catcaccatt catatcaata tacaccgttc ttatatttgc 2461 attccacttt acggttgctc ccaatgcttc actcacaaac cttacaggta caaaagttct 2521 ggattctttt aataatgcca ctgtatccat ttgcttttgt tgcccattta cttcatagtt 2581 tttattccct atttgaagca ctactttttt tccgtttaat gttattgtca ctttttttgt 2641 atttccgtcc caacttacat ccgcacccaa ggcttcccca acaaatctga ttggtacttg 2701 tgtccttgaa ttctcatcaa taaacggttc tgcatccggg aaatttatct ttgttccatt 2761 taccactact cgaattggaa gctcaacagc tgatattggt aatgttaaca agaatgtaac 2821 tattaatgcc aatgttaata ttcttgcaat tcttttcatt tcaatttccc ctccatatgt 2881 gttacttaca tgaaagtttt gttttattct tattcctttt caaagaaatg cttgatttca 2941 tttatttttt gaccattttc atcgatttca tatatgtata caccgtcaat gagccaaatt 3001 gcaataacca tacctttact ttctggattt acgcaataag tcacctcaga tgtatctaat 3061 tttttaagtt gtgtcatata atcatccact actatacagt caacacctag tcctcttgtc 3121 acagaagcat cactattttt caaatacgtt ctcgttctat tcataacata cagcatctta 3181 cctccagtgt atggatttac aatatcttct tcatatatat catgcaatgt agtcataact 3241 ccagcataat tacctgtttt agtaaaattt cttaaatcag cagcttttat agcatattcc 3301 aaaaatttct ccgcattagt cttttcttct ttattttctg tctccggtac cgtctgtatc 3361 gaatttgaat tctgtgtact ggaaggttga ttacttcctt cttcactctt accacaagct 3421 gataataaaa atactgcaca cactattact actatcaata ttgattttac tctgaccatt 3481 ttcaacatcc ctctccttta aatcatattt ttatgttaat atcccttata caggataaca 3541 tcaaacttca ttctttttcc atcttcagtt ctaaactcct ttggaataaa aggttttgtt 3601 gcaaacaaat attttattga aatcgaagat tcaatacgca tatatgtact gcattctgac 3661 aacctaaaag ttttatttcc tgaagaagtt ctcatattta cctgtatcaa atcagctatt 3721 cttttcatct ttacctcctt gtttgtaaaa agcaaaaata tccttaaata atcagtatat 3781 ttcatggaaa gaaaagatcc tctgagattc gtcttcatta cctctgaatc gctagtattg 3841 ccaatagaat caataaattt atttacctcc tcttttcctt tgtcagcaac ttctttaaat 3901 gtttctttaa acttattaac taaattttct ttataatcca taattctagc ccttatatta 3961 ttttttactt gccatttagc ttcctgaaca gtgttaaaaa tcatactatt tatttttttg 4021 cttgtttcat ctacatcata accaagcaac ttctctcctg ttgcaagttt tgaagtcaac 4081 tcagttatag cttctttaag atttctatcc ttgtatactt caagaaaatc tgaataatca 4141 actcctctaa taatatcagg cacataatcg cctacagtac tgttttcaac aatttccatt 4201 tcaacaagaa gcaatgtttg aacttcatta ttaatctggt taattatgtc tcctacttcc 4261 ccttcaactt taacatttaa acttgcctca aaatcatcaa aaatattctc agcagaatat 4321 gtcctttctt taaaaggatt ttcaatataa gaaaatgcct tgtctaccag taaatccact 4381 tttgaatcaa tatagtctac tatagctata cttgcgcttt ccaaaaaatc ttcagccttg 4441 ctctcagtgt aatcaattac ttgcttacta atctctttag ctttatcttt agctgtatca 4501 ataatctcat ttgtaattat tttcgaaaac ccatcaatat ccgttatcca cgtattcctc 4561 gttttaaata tcggtatact atcccctttt aacaaaaggt acacatcaaa caaagactca 4621 gccattgccc aagccatcat aatcaatgta tgtacaattg gtatacctac accaccggtc 4681 cacccagcca caacggtagc gacttccaat gccctgttaa actttaccgg atccgtatat 4741 atcgctataa cattcaacgc gaacctaaca agagtaatct gtgcctttac tgcatttata 4801 ttctcctttt cactctcaaa tccccctaaa atatactcta catccgcatg gttcgcgtca 4861 aagaaaaccg gcctgttttt catcaaattt cctcttaaat ccaggtcttt ctccaaatcc 4921 gtggtgtaat tcgcaaagct tcccattatg tactcattta tatatatttc atctctcaaa 4981 ttatagatac cgtccataaa tatttctgat atacccaaaa gaaaatccaa tccgctcttt 5041 gaaaactccg tattatcctt cgagaacgat gtcttactca aatccaccgc gccaagctct 5101 tttccggttg aagttcctcc actcttccct cctgaagcta taataccaag tatattcttt 5161 acatgttcca tatcattttt tatttcttcc agttccgtcc gtttataccc atttttcgac 5221 ggtacatcct ccggcatcgt tttcttgttt tcctttaccg gattttcatc ctcgggtccg 5281 ccttttttcg taaaatcact tatggaatcc ctcggatcct tttctccttc cttgggtttg 5341 tcagaaatta tacccttgtc tgcataataa tcaataggat caccattgac tttaccttta 5401 tactctgcta ttttcgcctt caccgtctca atattaagcc ttgcacgcac ttcatctata 5461 tccggaattg catccccaaa atcactcaaa ccaagttctt tcattctcgc attttctata 5521 caattcttta tatcattcag cagagcaagg ttgtgattaa gctcggcaat cttgggagtc 5581 aaatcctctg ccgatatcct ttctttcttg cttccaaggt caagccttgt ggtgttcgaa 5641 aattcattcg tttctccttc cagcttctca tttatttggt caatctttgc tacagtctcc 5701 accgactttt tcattacagt ctcaagtgca ttccttgctt cctctacagc ttttatggtt 5761 ttgtcaatat aacctattaa tctatcgtta acgttcttta taagtgtctt cttatcctcc 5821 aattcttttt tatttgcttt tattttttct ttcagctcgt ctatttcttc ttcaatctca 5881 tccttcgaat cctcaagatc ctttatcaaa ctttcaatct cttttatcct gttttcctcg 5941 tttgatacat ccacttcgcc ggactcatca tcttcagcct cttttttctt ttcctctatc 6001 tgcttcttga ggtctttgat ttcattcttg tatccatcta tttcttcttc tatttcttcc 6061 aacttttctt ccttatcttt tatctcttcc tccatgtcct ttatcgcttt ttccaactta 6121 actttttgca atatattgcg cagccaaatc caactgattt ggtatatttg catctgtggc 6181 aaatttattg accgtcacca tattatctga ggctttaacc tcattttcct taatctccgt 6241 taaattcttg tcaacatcaa gcttctcctt taaaatatca gcctgcttct taaaatcctt 6301 caaagcaaga aatttatcca taagtccttc agacaattcc ttcggacctc tgtatttcat 6361 atattccagt atctgcgctc ttaaaacctc cggctccgac aggttatata ttggctgaac 6421 tttaacattt tcaattttat aatcatacaa aaaaa //