LOCUS NZ_ACVX01000062 6441 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum DSM 2360 ctg00088, whole genome shotgun sequence. ACCESSION NZ_ACVX01000062 NZ_ACVX00000000 VERSION NZ_ACVX01000062.1 GI:256006089 KEYWORDS WGS. SOURCE Clostridium thermocellum DSM 2360 ORGANISM Clostridium thermocellum DSM 2360 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ACVX01000062. FEATURES Location/Qualifiers source 1..6441 /organism="Clostridium thermocellum DSM 2360" /mol_type="genomic DNA" /strain="DSM 2360" /isolation_source="contaminant of Clostridium thermocellum strain LQ8" /db_xref="taxon:572545" gene <1..344 /locus_tag="ClothDRAFT_2882" CDS <1..344 /locus_tag="ClothDRAFT_2882" /inference="similar to AA sequence:KEGG:Ppro_3717" /note="KEGG: ppd:Ppro_3717 integrase catalytic subunit" /codon_start=3 /transl_table=11 /product="integrase catalytic subunit" /protein_id="ZP_05431021.1" /db_xref="GI:256006090" /translation="GLNRKTVSRYLDENFNPVHAAYGKKRNGKLTPYIKAIDEYLEKG IMGSYIEEKIREMGYEGSSSTVRDYITDWKKRRKKYYDKSREDGTKTETIKRENILKL LYQPIEKSKNN" gene 425..694 /locus_tag="ClothDRAFT_2883" CDS 425..694 /locus_tag="ClothDRAFT_2883" /inference="similar to AA sequence:KEGG:KPN_pKPN3p05931" /note="KEGG: kpn:KPN_pKPN3p05931 putative transposase" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="ZP_05431022.1" /db_xref="GI:256006091" /translation="MLTDKNIDALDKWMEGAKNLNIPEINSFINGIERDMEAVRNAIK YEYSNGLVEGCINKLKVIKRIMYGRCSFETLKTKILRLEKMRLFN" misc_feature <437..667 /locus_tag="ClothDRAFT_2883" /note="Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464" /db_xref="CDD:33267" gene complement(1133..1612) /locus_tag="ClothDRAFT_2884" CDS complement(1133..1612) /locus_tag="ClothDRAFT_2884" /inference="similar to AA sequence:KEGG:Suden_1217" /note="KEGG: tdn:Suden_1217 hypothetical protein" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431023.1" /db_xref="GI:256006092" /translation="MFKLAIKYALFAAISTIGNLVTQQLCLMFFDYLVFLKSFENVSI LGLFNLNLVLMAAICMGTLVGLIIKYILDKKYIFNYKTKSKSEDTGKFIMYSFMGVFT TAIFWSFELIFDSIFNHQYAKYLGALIGLTIGYIIKYNLDKRFVFNMEQPPQDKKVS" gene 1845..2384 /locus_tag="ClothDRAFT_2885" CDS 1845..2384 /locus_tag="ClothDRAFT_2885" /inference="protein motif:PFAM:PF01885" /note="PFAM: phosphotransferase KptA/Tpt1; KEGG: eca:ECA0395 RNA 2'-phosphotransferase" /codon_start=1 /transl_table=11 /product="phosphotransferase KptA/Tpt1" /protein_id="ZP_05431024.1" /db_xref="GI:256006093" /db_xref="InterPro:IPR002745" /translation="MDYSKLSKEVAYALRHAPWEYGLELDAEGWVDINQLLSSLHECE KWKKVSEHDLHVMIEKSDKKRYEISNGKIRALYGHSIPQRIIKEQKCPPEVLYHGTAR RFVKSIKEKGLQPQGRQYVHLSADVETALQVGKRRDIKPVLLIVNALEAWSEGIKFYL GNDKVWLADAIPSKYIRFE" misc_feature 1857..2381 /locus_tag="ClothDRAFT_2885" /note="RNA 2'-phosphotransferase, Tpt1 / KptA family; Region: PTS_2-RNA; cl00804" /db_xref="CDD:186196" gene 2607..2849 /locus_tag="ClothDRAFT_2886" CDS 2607..2849 /locus_tag="ClothDRAFT_2886" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431025.1" /db_xref="GI:256006094" /db_xref="InterPro:IPR001876" /translation="MYVQEQIWLGEFIAKSFFIILRIFLLLIVIFLIIEFISKLKDKK ARVNSDKFVPENPEVLWECPECSNNNPNTTFTCNQC" gene 2877..3323 /locus_tag="ClothDRAFT_2887" CDS 2877..3323 /locus_tag="ClothDRAFT_2887" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="transcriptional repressor, CopY family" /protein_id="ZP_05431026.1" /db_xref="GI:256006095" /translation="MICFKELFLLNNKAGICYSIWATINIMLRRMIKKGAVRCDDSGR YKLFSPNIDKEESVVCETKNHLSKAALVIAIIFLRFLFRNKISLKLQYALRIPVLLRL LLLFTFGESTLSIMNWIEFQKSNTAMQISQLGEMSEYLHYQLPNKM" misc_feature <2937..>3080 /locus_tag="ClothDRAFT_2887" /note="Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cl00088" /db_xref="CDD:185792" gene 3569..4951 /locus_tag="ClothDRAFT_2888" CDS 3569..4951 /locus_tag="ClothDRAFT_2888" /inference="ab initio prediction:Prodigal:1.4" /note="KEGG: sat:SYN_00977 methyl-accepting chemotaxis protein" /codon_start=1 /transl_table=11 /product="signal transduction histidine kinase regulating citrate/malate metabolism" /protein_id="ZP_05431027.1" /db_xref="GI:256006096" /translation="MKKKVMLKQKLLRVSIILIALFTTAIFFVTNMKVTNLVEKSIAA KLDNISSLGLDIIETKYSGDWNVKGGRLYKGENLINNDSLILDAIKEKTGAIATVFLG DEKIATSELDSDGIRPIGGKASSEVVESVLQKGVVYTGTENILGETYAVKYVPLKDRS GEVLGMWFVGMPKSNIGSKDSQILIMRISIVVISVLCGILGCALLMLYVKKFLNDIDT HKVSFLESNSSGNKTQRKVVMLSLFLIGTFFLIWFTVQGFTIGNVVNNLEDSNIKDRL NACSQLGEMLINEMHKGEWTIKFNKLYKGSLLLNDDTSIAEKISSDTGLLSTVFMMDT RIATNISKDDGTKPIGAKAASEIVETVLKQGKEYIGEITVADKKCIEKYVPIKDSTGQ TIGMWSIGIERKVTARQIRDLRKAISQISLLAILVSLGAFLFLSVRFVSDIRNYNVCL STKVSEESSY" sig_peptide 3569..3670 /locus_tag="ClothDRAFT_2888" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probabilty 0.918) with cleavage site probability 0.350 at residue 34" misc_feature 3821..>4201 /locus_tag="ClothDRAFT_2888" /note="Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]; Region: CitA; COG3290" /db_xref="CDD:33099" misc_feature 4505..>4885 /locus_tag="ClothDRAFT_2888" /note="Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]; Region: CitA; COG3290" /db_xref="CDD:33099" gene 5071..6033 /locus_tag="ClothDRAFT_2889" CDS 5071..6033 /locus_tag="ClothDRAFT_2889" /inference="protein motif:PFAM:PF05448" /note="PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase" /codon_start=1 /transl_table=11 /product="Acetyl xylan esterase" /protein_id="ZP_05431028.1" /db_xref="GI:256006097" /db_xref="InterPro:IPR008391" /translation="MAQLYDMPLEELKKYKPALTKQKDFDEFWEKSLKELAEIPLKYQ LIPYDFPARRVKVFRVEYLGFKGANIEGWLAVPEGEGLYPGLVQFHGYNWAMDGCVPD VVNWALNGYAAFLMLVRGQQGRSVDNIVPGSGHALGWMSKGILSPEEYYYRGVYMDAV RAVEILASLPCVDESRIGVTGGSQGGGLALAVAALSGIPKVAAVHYPFLAHFERAIDV APDGPYLEINEYLRRNSGEEIERQVKKTLSYFDIMNLAPRIKCRTWICTGLVDEITPP STVFAVYNHLKCPKEISVFRYFGHEHMPGSVEIKLRILMDELNP" misc_feature 5077..6003 /locus_tag="ClothDRAFT_2889" /note="Acetyl xylan esterase (AXE1); Region: AXE1; pfam05448" /db_xref="CDD:114186" ORIGIN 1 ctggacttaa tagaaaaaca gttagtagat atcttgatga aaactttaat ccggtccatg 61 ctgcctatgg caaaaagaga aatgggaagc tgacaccata tataaaagcg attgacgaat 121 accttgagaa agggattatg ggttcatata ttgaggaaaa gatacgcgaa atgggatatg 181 agggttcatc atcaactgtg cgggattata taacagactg gaagaagcgg agaaaaaaat 241 attacgataa aagtagggaa gatgggacaa aaacagaaac aataaaaaga gaaaatatat 301 taaagctatt gtaccaacca atagaaaaaa gtaaaaataa ttagtaagaa acaatttgaa 361 atgatatgca aagaatatcc gtttttttga aaagatatac aaaataacat ggggatttaa 421 gagtatgcta actgataaaa atattgatgc tttggataaa tggatggagg gagccaaaaa 481 tctaaacata ccggagataa acagtttcat aaatgggatt gaacgagata tggaggctgt 541 aaggaatgcg ataaaatatg aatatagtaa tgggcttgta gaagggtgca ttaataaact 601 gaaggtaata aaacgaatta tgtatggccg ttgtagtttt gaaacattaa aaaccaaaat 661 tctccggctc gaaaaaatga ggttattcaa ctaacattgg aaagaaccgt gaaaatgctc 721 aacccatacg aataagattt agaacaatat cactacctaa caaattgaga tttcatgtag 781 aaggagtgtt ttcagaaaat atatcatcgg aagaaacagg tttttcaggt ttcaatacag 841 atggttctat taatcttgac gatttaacta taaaaaaatc tgcatgggtt gctcgttata 901 atgtatggga tcggaaaggg tggaagtttt aaacatgcaa taaaatgatt ctactccttg 961 gcgataattg caaaataata ttcaaggagg aaattttata tattaacatt gcaaaaagag 1021 cgaataaaaa ataattacgg ggaataactt ccaaagtgcc gcagatgaca gtgcgcacct 1081 aaaagatata tttaaggcta ttattcaaaa actgagtccc aattttttgg tatcatgata 1141 cctttttatc ctgcggcggc tgctccatat tgaatacgaa acgtttgtca agattatatt 1201 ttataatata tccgatggtg agacctatta aagcgcccag gtatttggca tattgatggt 1261 tgaaaatact gtcgaatata agctcaaaag accaaaatat agctgttgta aatacaccca 1321 taaaggaata catgatgaat tttccggtat cttcggattt actttttgtt ttatagttaa 1381 aaatatattt tttatcgaga atatacttta ttatcaatcc taccaatgta cccatacaaa 1441 ttgcagccat gaggacaagg ttaagattga aaagtcccag aatacttaca ttttcaaaac 1501 ttttcaaaaa tacaaggtaa tcgaagaaca taagacacag ttgttgtgtt acaagatttc 1561 ctattgttga tattgctgca aataacgcat attttatagc aagcttaaac aacttaatcc 1621 cgccaatctt tttagtatcg aagtagcaaa agtatgctgt tttcaatatg attttaggct 1681 gctgacaggt atttgtcaat aaagaaaaat aaatggaaga gtgatgcttt atgtccttta 1741 agtgctgcat agctttgata taatatatgt atacacttgt gtataattaa actgctgaag 1801 gcggaaacgg gaacggttgt tctgaaaatg aggaggtggt actgatggac tattcgaaac 1861 tgagcaagga agtggcttat gctttgcgtc atgccccgtg ggaatacgga ttggaactgg 1921 atgctgaagg ctgggttgat attaatcagt tgctatcctc tttacatgag tgtgaaaaat 1981 ggaagaaagt aagtgaacat gatttgcatg tgatgataga gaagtccgat aaaaagcgtt 2041 atgagatttc gaacggaaag attagggcat tgtatggtca ttcaattcca caaagaataa 2101 taaaagaaca gaagtgtcca ccggaagtat tgtaccatgg gacagccagg cgctttgtta 2161 aatcaataaa agaaaaaggc cttcagcctc aaggacgaca atatgttcac ttatcggccg 2221 atgtagaaac ggctttgcag gtcggtaaaa gacgagacat taaacctgta ttgctgatag 2281 taaatgccct tgaagcttgg tctgaaggta taaaatttta tcttggaaat gataaagtat 2341 ggttggctga cgctattcca agtaaatata ttcgttttga gtagatttga aagctgccga 2401 tttcagataa tgtgtttctt tttactatag atgagatatt ccaataatga gaccttttat 2461 actttaaaat ccaagtaagt ttttagatat tggcaacgta attgatgtca caaccacaat 2521 agtgtatgta aaaacataaa agtaatttgc aaactactca acatataaca tttcgatgta 2581 aattattata aaggatgaaa aaggggatgt atgtgcagga acaaatatgg ttgggagaat 2641 ttatagcaaa atcttttttc attattctga gaattttttt gctgttgata gttatttttc 2701 taattatcga atttatctca aaattaaaag ataaaaaggc aagagtaaat tccgataaat 2761 ttgtccctga aaacccggaa gttttatggg aatgccctga atgcagcaac aacaatccaa 2821 atacaacttt tacatgcaac caatgctgat ataggattcg atagtatgtt ttgaaaatga 2881 tatgctttaa agaattattc ctcctcaaca ataaggctgg catttgttat tctatatggg 2941 ctactataaa tattatgttg cggcgtatga ttaaaaaagg agctgtgcgc tgtgatgaca 3001 gcgggcgtta taagttgttc tctccgaata ttgacaaaga ggaatctgtt gtctgcgaaa 3061 ccaaaaatca cctttctaaa gcggctctgg ttattgcaat aatatttctt cgatttttat 3121 ttcgtaataa aatcagtctg aagctgcagt atgccttgag gattccggtg cttttgcggc 3181 ttttattgct tttcactttt ggagaaagta ctttaagtat tatgaactgg attgagttcc 3241 aaaaaagcaa taccgccatg cagatttctc agcttgggga aatgtcggaa tatttacatt 3301 accaactacc aaataagatg taaaaacaga taatatgata tagaaacgaa gcatgatgga 3361 gaaatagata caaaaaaaga ctttgtttat ctccctgaca cggcaaaaaa ataaaaaatt 3421 taacaaaaac ctattgctaa tttttctttt atagcgtagt ataatgttag tttttccaca 3481 aaatagtcta taaaatattt atatttataa aaaatataaa atattataca gaatatacag 3541 ataaagactt ttgaggggag atgcacaaat gaaaaagaag gttatgctaa agcaaaagct 3601 tttaagggta tctattattt taattgcatt atttacaacc gcgatttttt tcgtcacaaa 3661 catgaaggtt acaaatttag tggagaaaag catagcagca aaattggaca acatttcaag 3721 ccttgggctt gatattattg aaaccaaata cagcggagat tggaatgtga aaggtggaag 3781 gctgtataaa ggagagaatt tgattaacaa tgattccctg attttagacg caattaagga 3841 gaaaaccgga gcaatcgcga ctgtatttct tggagatgaa aaaattgcca caagcgagct 3901 tgacagcgac ggtataaggc caatcggggg caaggcgtca agtgaagtgg ttgaaagtgt 3961 tttgcaaaaa ggtgttgtat atacaggaac agagaatatt cttggcgaaa catatgccgt 4021 aaaatatgtg cctttaaaag accgcagcgg tgaagtttta ggaatgtggt ttgtcggtat 4081 gccaaaaagc aatattggca gcaaggacag ccagatactt atcatgagga tttcaattgt 4141 tgttatttcc gtattgtgcg gtatattggg ctgcgcattg ttaatgcttt atgtaaagaa 4201 gtttttaaac gatatagata cccacaaggt ttcattcctt gaatccaatt caagcggtaa 4261 taaaactcag cgcaaagttg taatgttatc attattcctt ataggcacgt ttttcctgat 4321 ttggtttact gtacagggct tcacaatcgg taatgtggtc aacaaccttg aagacagtaa 4381 tataaaagac aggctgaatg cgtgttcaca actgggagaa atgttaatta atgaaatgca 4441 taaaggggag tggacaatta agtttaacaa actttataag ggttcccttc ttttgaatga 4501 tgacacttca atagcggaaa aaattagttc cgatacagga ttgctttcaa ctgtttttat 4561 gatggacaca agaattgcaa caaacatttc aaaggatgac ggcacaaaac ccataggagc 4621 caaggctgcg agtgaaattg tagagactgt cttaaagcag ggcaaggaat atatcggaga 4681 aatcactgtt gccgacaaga aatgtataga aaagtatgtt ccgataaaag acagcaccgg 4741 ccagacaatc ggtatgtggt ccataggaat cgagaggaag gtaactgcaa gacaaataag 4801 ggatttaaga aaggctatat ctcaaataag cttgttggct atattggtgt cattaggagc 4861 gtttttattc ctgtcggtaa gattcgtatc ggatataaga aattataatg tatgtctgag 4921 tacaaaagtc agtgaagaaa gttcttattg attttgtttg gaagatgtaa taaatgaaaa 4981 tgtaataata aataaagctt taaacttaaa cacaagccgg atggtaaaaa agttaaagta 5041 ttggaatttg aataaaaagg ggttttgaaa atggcacaat tatatgatat gcctttggag 5101 gaattaaaaa aatataagcc tgcgcttaca aaacagaaag attttgatga gttttgggaa 5161 aaaagcctta aagagctggc tgaaattcct ttaaaatatc aacttatacc ttatgatttt 5221 ccggcccgga gggtaaaagt tttcagagtt gaatatcttg gttttaaagg tgcaaatatt 5281 gaagggtggc ttgccgttcc cgagggagaa gggttgtatc ccgggcttgt acagtttcac 5341 ggatacaact gggcgatgga tggatgtgtt cccgatgtgg taaattgggc tttgaatgga 5401 tatgccgcat ttcttatgct tgttcgggga cagcagggaa gaagcgtgga caatattgtg 5461 cccggcagcg gtcatgcttt gggatggatg tcgaaaggta ttttgtcacc ggaggaatat 5521 tattatagag gagtatatat ggatgcggtt cgtgctgttg aaattttggc ttcgcttcct 5581 tgtgtggatg aatcgagaat aggagtgaca gggggcagcc agggtggagg acttgcactg 5641 gcggtggctg ctctgtccgg cataccgaaa gttgcagccg tgcattatcc gtttctggca 5701 cattttgagc gtgccattga cgttgcgccg gacggccctt atcttgaaat taacgaatat 5761 ttaagaagaa acagcggtga agaaatagaa agacaggtaa agaaaaccct ttcctatttt 5821 gatatcatga atcttgctcc ccgtataaaa tgccgtactt ggatttgcac tggtcttgtg 5881 gatgagatta ctcctccgtc aacggttttt gcagtgtaca atcacctcaa atgcccaaag 5941 gaaatttcgg tattcagata ttttgggcat gaacatatgc caggaagcgt tgaaatcaag 6001 ctgaggatac ttatggatga gctgaatccg taattttcaa tccggcgatg ccaagctaaa 6061 taactttaaa atggacagtt gcaagctgat aaaaataata tgaaaaaatc taatataaaa 6121 tttaaaatgt ttacatgata ttatctaaat atattatctc aatggattga aggatatttt 6181 tctttcagtg cgaaatagta attttaattg agaaaagagc agaaataacg agataagtat 6241 atgtacattc gattaaagcc cgattttggc atgtcgatgt tgttgaatga agtattgttt 6301 tggtgatata ttagtaaagc tgtcgctgat agcactttaa gagttgaaaa acgggcttta 6361 tagatgcctg attaaaattt ggttaaaagt gttaagaaaa aagtgttgac aaaccgacag 6421 caacgtgcta aaatgaaaat c //