LOCUS NZ_ACVX01000076 2387 bp DNA linear CON 10-NOV-2010 DEFINITION Clostridium thermocellum DSM 2360 ctg00134, whole genome shotgun sequence. ACCESSION NZ_ACVX01000076 NZ_ACVX00000000 VERSION NZ_ACVX01000076.1 GI:256006159 KEYWORDS WGS. SOURCE Clostridium thermocellum DSM 2360 ORGANISM Clostridium thermocellum DSM 2360 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from ACVX01000076. FEATURES Location/Qualifiers source 1..2387 /organism="Clostridium thermocellum DSM 2360" /mol_type="genomic DNA" /strain="DSM 2360" /isolation_source="contaminant of Clostridium thermocellum strain LQ8" /db_xref="taxon:572545" gene 3..1622 /locus_tag="ClothDRAFT_2940" CDS 3..1622 /locus_tag="ClothDRAFT_2940" /inference="protein motif:TFAM:TIGR01643" /note="TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: ppd:Ppro_0084 YD repeat-containing protein" /codon_start=1 /transl_table=11 /product="YD repeat protein" /protein_id="ZP_05431077.1" /db_xref="GI:256006160" /db_xref="InterPro:IPR006530" /translation="MIGKDGRSTYYTYNADNNITGRWEEEGQMEKYEYNVDGSLAASI SGTTIHTYAYTLAGRLKSKTTNGQKVLEYDYNKNGLVSKVTDISGTPVEYTYDVLGRL TTVTNGGKVSARYEYNIDNTIAQVLYGSGVCARYEYDMDKKIKELLNIDPTGKEMFVY RYAYDGNGNPILKEENEKVTAYSYDTLNRLKEVVYPGNIRERFEYDANGNRIKRECGD ILEQYEYDSCNRLVQRIKNGLVTEYEYDARGNLIKEKEGELTKLYSYDGFDRLIRVQN PDGTYMENIYDAEDLRVISIENKNYNRYIYSGRNVTCEVNENWVLKDRIVLGHMILQK EDSDKNAYYYIHNAHGDITALTDGKGEVINSYSYDAFGNILDSVEKIENRFKYSGEVL DPVTGQYYLRARYYNPSIGRFMQEDTFRGDGLNLYTYVANNPLKYVDPTGHCKESVDF SDVYDNILSKNPNDILKDIVLRKIMGPDWTPNYLRNSNEIEDYKFKAVIYLNRSDGAF LQGHSAIMLVTDITKGCSIALWVMQVKHFSL" misc_feature <12..1328 /locus_tag="ClothDRAFT_2940" /note="Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209" /db_xref="CDD:33022" misc_feature 225..329 /locus_tag="ClothDRAFT_2940" /note="RHS Repeat; Region: RHS_repeat; cl11982" /db_xref="CDD:159659" misc_feature 1104..1331 /locus_tag="ClothDRAFT_2940" /note="RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696" /db_xref="CDD:163408" gene 1589..1843 /locus_tag="ClothDRAFT_2941" CDS 1589..1843 /locus_tag="ClothDRAFT_2941" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431078.1" /db_xref="GI:256006161" /translation="MGDASKTLQLIAGFNSPGKILKPFDKRKKQYVTVDVISFLEKGK IENVEKFKGNDTFTDQYDRYIYIPITNEQGQAMYRKAEML" gene 1922..2155 /locus_tag="ClothDRAFT_2942" CDS 1922..2155 /locus_tag="ClothDRAFT_2942" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431079.1" /db_xref="GI:256006162" /translation="MNFAPTKGNALDERINLYTSFNPLVSLPPRAMLNYIFDRVDKTI PNAAYNYGAFIANKQGWIVGNTDDSAFFWNPFK" gene 2168..>2387 /locus_tag="ClothDRAFT_2943" CDS 2168..>2387 /locus_tag="ClothDRAFT_2943" /inference="ab initio prediction:Prodigal:1.4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ZP_05431080.1" /db_xref="GI:256006163" /translation="MSKKLVLLIISILCFTALTGCWIVRGDLSGDIIIGDGHGGTSHS IIKYNPATNKFESVEPGLYYEVEYNDDKS" sig_peptide 2168..2230 /locus_tag="ClothDRAFT_2943" /note="Signal predicted by SignalP 3.0 HMM (Signal peptide probabilty 0.987) with cleavage site probability 0.502 at residue 21" ORIGIN 1 ggatgatagg gaaagacgga cgcagtacat attacaccta caatgcagat aacaatataa 61 ccggccgttg ggaagaagaa gggcagatgg aaaaatacga gtataatgta gacggaagcc 121 tggctgcgtc aataagcggt actactatac atacttatgc ctataccttg gcaggaaggc 181 tgaaaagtaa gacaaccaat ggacagaagg tattggagta tgattacaat aagaatgggc 241 ttgtatcgaa agttaccgat ataagtggaa caccggtgga gtatacatat gacgtactgg 301 ggagattaac aacggtaaca aacggaggca aagtttctgc gaggtatgaa tacaatattg 361 acaacacaat agcgcaggtg ttgtatggga gtggagtatg cgctagatat gaatacgaca 421 tggataagaa gataaaagag cttttaaaca tagacccgac agggaaagaa atgtttgtat 481 acaggtatgc gtatgatggg aacggcaatc caattttgaa agaagagaac gagaaagtaa 541 cggcttacag ttatgatacg ctgaaccgtt tgaaagaagt agtataccct gggaatataa 601 gagagaggtt tgaatatgat gcgaacggca acaggatcaa aagagaatgt ggagatatac 661 tggaacagta tgaatatgat agttgcaata gattggttca aagaataaaa aacgggctgg 721 taacggaata tgagtatgat gcgaggggaa atttgataaa agaaaaagag ggtgagttga 781 ctaaattata cagctatgac ggatttgaca gactgatacg tgtacaaaat ccggacggaa 841 catatatgga aaatatatat gatgctgaag atttgagagt gatatcaata gaaaataaaa 901 actacaacag atatatatac agcggaagaa atgtaacatg tgaagtaaac gaaaattggg 961 tattgaaaga tagaatagtg ttaggacata tgatattgca gaaagaggac agtgacaaga 1021 atgcctatta ctatattcac aatgcccatg gggatattac agctcttacc gatgggaaag 1081 gagaggtaat aaacagctac agttacgatg cttttggaaa tatattggac agtgttgaga 1141 agatagagaa cagattcaag tattcgggag aagtgcttga tcctgtgacg ggacagtact 1201 acctgagagc gagatattat aacccaagca taggaaggtt tatgcaggaa gatacgttta 1261 ggggtgacgg actaaactta tatacctatg ttgccaacaa tccactaaag tacgttgacc 1321 caaccggtca ttgtaaagag agtgttgatt ttagtgatgt atatgacaac attttaagta 1381 aaaatcctaa tgacattttg aaagatatag tattaagaaa aataatggga ccggactgga 1441 ctccaaacta tttgagaaat tcaaatgaaa tagaggatta taagtttaag gcagtaatat 1501 atctaaatag aagtgacggt gcttttttgc agggacattc agcgataatg cttgtaaccg 1561 atataaccaa gggttgttct atagctttgt gggtgatgca agtaaaacac ttcagcttat 1621 agcaggattt aattcgccgg ggaaaatatt aaaaccattt gataaacgaa aaaaacaata 1681 tgttacagtc gatgttatta gttttttaga aaaaggaaaa attgaaaatg tggaaaagtt 1741 taaagggaat gacacattta ctgatcaata tgatagatat atttatatac ctataacaaa 1801 tgagcagggg caggctatgt acaggaaagc ggagatgtta taatataaac agcctccgga 1861 gtataatctc tatgcaaata attgtaatca tgtagcacaa caaatattgg aagcaggagg 1921 tttgaatttt gcaccgacaa aagggaatgc attggatgaa cgtataaatt tatatacatc 1981 ttttaatcct cttgtttctc taccgccaag agcaatgctg aattatattt ttgacagggt 2041 agacaagacg atacctaatg ctgcatataa ttacggcgct tttattgcga acaaacaagg 2101 ttggattgtg gggaatacgg atgatagtgc atttttttgg aatccgttta agtaaggggg 2161 aaaattaatg agtaagaaat tggttttact tataataagt atactgtgtt ttactgcctt 2221 aacgggttgt tggatagtca gaggtgatct ttccggcgat attattatag gtgatggtca 2281 tggaggaact tctcatagta ttatcaaata taatcccgct acaaataaat ttgaaagtgt 2341 tgagccgggt ctttactatg aagtggaata taatgatgat aaatcaa //