================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jun 15 2020, 18:12:27 Command: cd-hit -i bio2356268666705123683.tmp -c 1.0 -n 5 -l 10 -t 1 -T 16 -g 0 -G 1 -o bio2356268666705123683.tmp.out Started: Sun Oct 4 15:32:23 2020 ================================================================ Output ---------------------------------------------------------------- total seq: 81 longest and shortest : 84 and 72 Total letters: 6251 Sequences have been sorted Approximated minimal memory consumption: Sequence : 0M Buffer : 16 X 10M = 168M Table : 2 X 65M = 130M Miscellaneous : 0M Total : 298M Table limit with the given memory limit: Max number of representatives: 2862384 Max number of word counting entries: 62644713 # comparing sequences from 0 to 81 ---------- new table with 60 representatives 81 finished 60 clusters Approximated maximum memory consumption: 298M writing new database writing clustering information program completed ! Total CPU time 0.40 >Cluster 0 0 84aa, >KJ551530:CDS1... * >Cluster 1 0 84aa, >AK354890:CDS1... * >Cluster 2 0 83aa, >KJ551523:CDS1... * >Cluster 3 0 83aa, >AK358090:CDS1... * >Cluster 4 0 82aa, >KF410865:CDS1... * 1 82aa, >KJ551528:CDS1... at 100.00% 2 82aa, >AB089942:CDS1... at 100.00% >Cluster 5 0 82aa, >KJ551517:CDS1... * >Cluster 6 0 82aa, >JQ435849:CDS1... * >Cluster 7 0 82aa, >KJ551525:CDS1... * >Cluster 8 0 82aa, >KJ551529:CDS1... * >Cluster 9 0 82aa, >KJ551524:CDS1... * >Cluster 10 0 82aa, >KJ551519:CDS1... * >Cluster 11 0 82aa, >GQ449377:CDS1... * >Cluster 12 0 82aa, >KJ551522:CDS1... * >Cluster 13 0 82aa, >GQ449374:CDS1... * >Cluster 14 0 82aa, >GQ449375:CDS1... * >Cluster 15 0 82aa, >KJ551521:CDS1... * >Cluster 16 0 82aa, >GQ449373:CDS1... * >Cluster 17 0 81aa, >MF289365:CDS1... * >Cluster 18 0 81aa, >MG970570:CDS1... * >Cluster 19 0 81aa, >MF289364:CDS1... * >Cluster 20 0 81aa, >GQ449372:CDS1... * 1 81aa, >KJ551516:CDS1... at 100.00% >Cluster 21 0 80aa, >AP006168:CDS20... * 1 80aa, >MF580139:CDS1... at 100.00% >Cluster 22 0 80aa, >HG792392:CDS1... * 1 80aa, >JF797205:CDS1... at 100.00% 2 80aa, >EF200066:CDS1... at 100.00% >Cluster 23 0 80aa, >EU952901:CDS1... * >Cluster 24 0 80aa, >EU958628:CDS1... * 1 80aa, >EU957417:CDS1... at 100.00% 2 80aa, >EU958657:CDS1... at 100.00% 3 80aa, >EU961911:CDS1... at 100.00% >Cluster 25 0 80aa, >EU958634:CDS1... * >Cluster 26 0 80aa, >LN650980:CDS1... * >Cluster 27 0 75aa, >BT090977:CDS1... * >Cluster 28 0 75aa, >MH045508:CDS1... * 1 75aa, >MH045509:CDS1... at 100.00% >Cluster 29 0 75aa, >KJ939334:CDS1... * >Cluster 30 0 75aa, >AY907349:CDS1... * >Cluster 31 0 75aa, >MH045507:CDS1... * >Cluster 32 0 75aa, >HM240258:CDS1... * >Cluster 33 0 75aa, >MH045506:CDS1... * >Cluster 34 0 75aa, >AB020613:CDS1... * >Cluster 35 0 75aa, >X16877:CDS1... * >Cluster 36 0 75aa, >MH045510:CDS1... * >Cluster 37 0 75aa, >LN901492:CDS1... * 1 75aa, >LN913082:CDS1... at 100.00% >Cluster 38 0 75aa, >JQ314214:CDS1... * >Cluster 39 0 75aa, >LN901493:CDS1... * 1 75aa, >LN913083:CDS1... at 100.00% >Cluster 40 0 75aa, >JQ314215:CDS1... * >Cluster 41 0 75aa, >JX424594:CDS1... * 1 75aa, >JX424606:CDS1... at 100.00% 2 75aa, >DQ296045:CDS1... at 100.00% >Cluster 42 0 74aa, >X52224:CDS1... * >Cluster 43 0 74aa, >DQ342338:CDS1... * >Cluster 44 0 74aa, >AY560900:CDS1... * >Cluster 45 0 74aa, >DQ288897:CDS1... * >Cluster 46 0 74aa, >EU920046:CDS1... * 1 74aa, >EU920045:CDS1... at 100.00% >Cluster 47 0 74aa, >AY288448:CDS1... * >Cluster 48 0 73aa, >AY313169:CDS1... * >Cluster 49 0 73aa, >AY681973:CDS1... * >Cluster 50 0 73aa, >EU920048:CDS1... * >Cluster 51 0 73aa, >EU920044:CDS1... * 1 73aa, >EU920047:CDS1... at 100.00% >Cluster 52 0 73aa, >MF325791:CDS1... * >Cluster 53 0 73aa, >MF325783:CDS1... * >Cluster 54 0 73aa, >FJ174689:CDS1... * >Cluster 55 0 72aa, >AY560899:CDS1... * >Cluster 56 0 72aa, >AY227192:CDS1... * 1 72aa, >AY182164:CDS1... at 100.00% 2 72aa, >AF535089:CDS1... at 100.00% 3 72aa, >AY244556:CDS1... at 100.00% 4 72aa, >AY206395:CDS1... at 100.00% >Cluster 57 0 72aa, >AY560901:CDS1... * >Cluster 58 0 72aa, >AY313166:CDS1... * 1 72aa, >AY681971:CDS1... at 100.00% >Cluster 59 0 72aa, >AY681967:CDS1... *