T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=67
*
 BAD AVG GOOD
*
AF112443_CDS1    :  72
AF128239_CDS1    :  73
BOAJ5280_CDS1    :  58
BOAJ5281_CDS1    :  58
CAGTHIOGN_CDS1   :  74
CAGTHIOGN_CDS2   :  74
CAGT_CDS1        :  75
GMU12150_CDS1    :  72
ZMA133530_CDS1   :  48
cons             :   6

AF112443_CDS1    MARSIYFMAF--LVLAMTLFVAYGVQ-----GKEIC
AF128239_CDS1    MARSIYFMAF--LVLAVTLFVANGVQ-----GQNNI
BOAJ5280_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKP
BOAJ5281_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKP
CAGTHIOGN_CDS1   MAGFSKVIAT--IFLMMMLVFATGMV-----AEART
CAGTHIOGN_CDS2   MAGFSKVIAT--IFLMMMLVFATDMM-----AEAKI
CAGT_CDS1        MAGFSKVVAT--IFLMMLLVFATDMM-----AEAKI
GMU12150_CDS1    MSRSVPLVST--ICVLLLLLVATEMMGPTMVAEART
ZMA133530_CDS1   MR-IVYMAAV------MCLVLATMSS-----TSPSF

cons             *     .         *.            .   


AF112443_CDS1    CK--------------ELTKPVK--CSSDPLCQKLC
AF128239_CDS1    CK--------------TTSKHFKGLCFADSKCRKVC
BOAJ5280_CDS1    CY--------------SQEPDKT--CEV-NRCKANC
BOAJ5281_CDS1    CY--------------SQEPDKT--CEV-NRCKANC
CAGTHIOGN_CDS1   CE--------------SQSHRFKGLCFSKSNCGSVC
CAGTHIOGN_CDS2   CE--------------ALSGNFKGLCLSSRDCGNVC
CAGT_CDS1        CE--------------ALSGNFKGLCLSSRDCGNVC
GMU12150_CDS1    CE--------------SQSHRFKGPCLSDTNCGSVC
ZMA133530_CDS1   CQAGGCIGCPRAPPPPSDETCYEDLKCSASRCHLGC

cons                                          *   *


AF112443_CDS1    MEKEKYE--DGHCF---TILSKCLCMKRCNA-----
AF128239_CDS1    IQEDKFE--DGHCS---KLQRKCLCTKNCVFDNIPN
BOAJ5280_CDS1    VKKHKKILAFTSCIKENNGNMYCRCQYPCPP-----
BOAJ5281_CDS1    VKKHKKILAFTSCIKENNGNMYCRCQYPCPP-----
CAGTHIOGN_CDS1   HT-EGFN--GGHCR---GFRRRCFCTRHC-------
CAGTHIOGN_CDS2   RR-EGFT--SGVCR---GFPLKCFCRKPGA------
CAGT_CDS1        RR-EGFT--DGSCI---GFRLQCFCTKPCA------
GMU12150_CDS1    RT-ERFT--GGHCR---GFRRRCFCTKHC-------
ZMA133530_CDS1   IH-RGYKGTGSYCR---G--RDCCCKH---------

cons                         *         * *           


AF112443_CDS1    ----------KTLATELLA------
AF128239_CDS1    DVGTILVQDAKTLEAQLLEEEILGL
BOAJ5280_CDS1    -------------------------
BOAJ5281_CDS1    -------------------------
CAGTHIOGN_CDS1   -------------------------
CAGTHIOGN_CDS2   -------------------------
CAGT_CDS1        -------------------------
GMU12150_CDS1    -------------------------
ZMA133530_CDS1   -------------------------

cons