- children - Variable in class org.biopcd.parser.SimpleNode
-
- childrenAccept(PCDVisitor, Object) - Method in class org.biopcd.parser.SimpleNode
-
Accept the visitor.
- choice_list - Variable in class org.biopcd.widgets.ChoiceList
-
The list containing the data.
- ChoiceList - Class in org.biopcd.widgets
-
A wrapper class used to abstract choice lists within command windows.
- ChoiceList(String) - Constructor for class org.biopcd.widgets.ChoiceList
-
Creates a new instance of a choice list widget
(this specific constructor is used by the PCD editor ONLY!).
- ChoiceList(String, String, PCDSQL, int) - Constructor for class org.biopcd.widgets.ChoiceList
-
Creates a new instance of choice list widget.
- ChoiceList(String, String, String[], String[], int) - Constructor for class org.biopcd.widgets.ChoiceList
-
Creates a new instance of ChoiceList
(represents "choice_list" in GDE menu files).
- Chooser - Class in org.biopcd.widgets
-
Wrapper class for a group of radiobuttons.
- Chooser(String) - Constructor for class org.biopcd.widgets.Chooser
-
Creates a new instance of a chooser widget (used by PCD edit ONLY!).
- Chooser(String, String, PCDSQL, int) - Constructor for class org.biopcd.widgets.Chooser
-
Creates a new instance of chooser widget.
- Chooser(String, String, String[], String[], int) - Constructor for class org.biopcd.widgets.Chooser
-
Creates a new instance of a chooser widget.
- clearNodeScope(Node) - Method in class org.biopcd.parser.JJTPCDState
-
- close() - Method in class org.biopcd.parser.RunWindow
-
Action for command buttons to close the window.
- close() - Method in class org.biopcd.sql.JDBCDBConnection
-
Close the database connection represented by this object.
- close() - Method in interface org.biopcd.widgets.CloseableWindow
-
Action for command buttons to close the window.
- close - Variable in class org.biopcd.widgets.CommandButton
-
Whether the button closes the main window when clicked.
- close() - Method in class org.biopcd.widgets.WidgetInstance
-
Notifies the variable that the program has now completed successfully.
- CloseableWindow - Interface in org.biopcd.widgets
-
This class provides a common interface for all RunnableWindows (and other
windows) which may be closed.
- closeNodeScope(Node, int) - Method in class org.biopcd.parser.JJTPCDState
-
- closeNodeScope(Node, boolean) - Method in class org.biopcd.parser.JJTPCDState
-
- cnames - Variable in class org.biopcd.widgets.ListWidget
-
The list of choice names
- COEL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- column - Variable in class org.biopcd.parser.SimpleCharStream
-
- combobox - Variable in class org.biopcd.widgets.ComboBoxWidget
-
The combo box object to display
- COMBOBOX_UI - Variable in class org.biopcd.widgets.ComboBoxWidget
-
The UI to enable scrolling of the JComboBox.
- ComboBoxWidget - Class in org.biopcd.widgets
-
A wrapper class used to abstract combo boxes within command windows.
- ComboBoxWidget(String) - Constructor for class org.biopcd.widgets.ComboBoxWidget
-
Creates a new instance of a combo box widget
(this specific constructor is used by the PCD editor ONLY!).
- ComboBoxWidget(String, String, PCDSQL, int) - Constructor for class org.biopcd.widgets.ComboBoxWidget
-
Creates a new instance of combo box widget.
- ComboBoxWidget(String, String, String[], String[], int) - Constructor for class org.biopcd.widgets.ComboBoxWidget
-
Creates a new instance of a combo box parameter widget
(represents "choice_list" in GDE menu files).
- COMMA - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- command - Variable in class org.biopcd.widgets.CommandButton
-
The command to run when the button is clicked.
- CommandButton - Class in org.biopcd.widgets
-
Creates a JButton, which when clicked runs internal API
functions or external commands
- CommandButton(String) - Constructor for class org.biopcd.widgets.CommandButton
-
Creates a new instance of a choice list widget
(this specific constructor is used by the PCD editor ONLY!).
- CommandButton(String, Map<String, Widget>, String, String, boolean) - Constructor for class org.biopcd.widgets.CommandButton
-
Creates a new instance of CommandButton
- CommandThread - Class in org.biopcd.parser
-
Class used for making abstract actions which launch threads.
- CommandThread(String) - Constructor for class org.biopcd.parser.CommandThread
-
Creates a new instance of CommandThread.
- CommandThread(String, Map<String, Widget>) - Constructor for class org.biopcd.parser.CommandThread
-
Creates a new instance of CommandThread.
- COMMENT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- connect() - Method in class org.biopcd.sql.JDBCDBConnection
-
Connect to the database.
- Content(int, Map<String, Widget>, PCDIO) - Method in class org.biopcd.parser.PCD
-
Parses PCD file content
- copyInclude(String, String, BufferedWriter) - Static method in class org.biopcd.parser.PreProcess
-
Parses out the name of an include file from an @include directive, and
writes the contents of that file to the output blmenu file.
- createTransferable(JComponent) - Method in class org.biopcd.widgets.WidgetTransferHandler
-
This creates the Transferable object.
- curChar - Variable in class org.biopcd.parser.PCDTokenManager
-
- CURRENT_ARCH - Static variable in class org.biopcd.parser.PCD
-
Stores the current machine architecture
- CURRENT_OS - Static variable in class org.biopcd.parser.PCD
-
Stores the current operating system
- currentToken - Variable in exception org.biopcd.parser.ParseException
-
This is the last token that has been consumed successfully.
- DATA - Static variable in interface org.biopcd.parser.PCDConstants
-
Lexical state.
- debug - Static variable in class org.biopcd.parser.PCD
-
Whether to operate in debug mode
- debugStream - Variable in class org.biopcd.parser.PCDTokenManager
-
Debug output.
- Decimal() - Method in class org.biopcd.parser.PCD
-
Parses a decimal number from a PCD file into a Java double
- DECIMAL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- decimalFields(int, String) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any decimal field
- DEFAULT - Static variable in interface org.biopcd.parser.PCDConstants
-
Lexical state.
- DEFAULT_BUFF_SIZE - Static variable in class org.biopcd.parser.StreamCopier
-
The default buffer size for copying streams
- detectARCH() - Static method in enum org.biopcd.parser.PCD.ARCH
-
Detects the current system architecture
Check out: http://lopica.sourceforge.net/os.html
- detectOS() - Static method in enum org.biopcd.parser.PCD.OS
-
Detects the current operating system
Check out: http://lopica.sourceforge.net/os.html
- DIGITS - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- dir - Variable in class org.biopcd.parser.PCDObject
-
The parent directory that the menu item was read from (optional)
- DirectoryChooser - Class in org.biopcd.widgets
-
A wrapper class used for directory selection within command windows.
- DirectoryChooser(String) - Constructor for class org.biopcd.widgets.DirectoryChooser
-
Creates a new instance of a directory chooser widget
(this specific constructor is used by the PCD editor ONLY!).
- DirectoryChooser(String, String, String) - Constructor for class org.biopcd.widgets.DirectoryChooser
-
Creates a new instance of a file chooser widget.
- dirFields(int, String) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any directory chooser
- disable_tracing() - Method in class org.biopcd.parser.PCD
-
Disable tracing.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.AbstractFileChooser
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.ChoiceList
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.Chooser
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.ComboBoxWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.CommandButton
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.NumberWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.PanelWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.TabbedWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.TempFile
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.TextAreaWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in class org.biopcd.widgets.TextWidget
-
Displays the current widget within the container 'dest'.
- display(Container, CloseableWindow) - Method in interface org.biopcd.widgets.Widget
-
Displays the current widget within the container 'dest'.
- displayEdit(JFrame) - Method in class org.biopcd.widgets.NumberWidget
-
Displays the current widget in an editor panel.
- displayEdit(JFrame) - Method in class org.biopcd.widgets.PanelWidget
-
Displays the current widget in an editor panel.
- displayEdit(JFrame) - Method in class org.biopcd.widgets.SimpleWidget
-
Displays the current widget in an editor panel.
- displayEdit(JFrame) - Method in class org.biopcd.widgets.TabbedWidget
-
Displays the current widget in an editor panel.
- displayEdit(JFrame) - Method in class org.biopcd.widgets.TempFile
-
Displays the current widget in an editor panel.
- displayEdit(JFrame) - Method in interface org.biopcd.widgets.Widget
-
Displays the current widget in an editor panel.
- DOLLAR - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- Done() - Method in class org.biopcd.parser.SimpleCharStream
-
Reset buffer when finished.
- DOUBLEQ - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- dragMouseMoved(DragSourceDragEvent) - Method in class org.biopcd.widgets.WidgetTransferHandler
-
- drop() - Method in class org.biopcd.widgets.WidgetGenerator
-
Generate a new widget to drop in the destination window.
- dump(String) - Method in class org.biopcd.parser.SimpleNode
-
- edit(Component, Container) - Method in class org.biopcd.widgets.PanelWidget
-
Populates a container with the component objects
necessary for editing the current widget
- edit(Component, Container) - Method in class org.biopcd.widgets.TabbedWidget
-
Populates a container with the component objects
necessary for editing the current widget
- editImage(JLabel, JPanel) - Static method in class org.biopcd.widgets.SimpleWidget
-
Utility method to generate the image object representing
the current content of the widget.
- editWindow(Container) - Method in class org.biopcd.widgets.CommandButton
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.ListWidget
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.NumberWidget
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.SimpleWidget
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.TempFile
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.TextAreaWidget
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- editWindow(Container) - Method in class org.biopcd.widgets.TextWidget
-
Populates a container with the component objects
necessary for editing the current widget's properties.
- enable_tracing() - Method in class org.biopcd.parser.PCD
-
Enable tracing.
- endColumn - Variable in class org.biopcd.parser.Token
-
The column number of the last character of this Token.
- endLine - Variable in class org.biopcd.parser.Token
-
The line number of the last character of this Token.
- ENVVAR - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- EOF - Static variable in interface org.biopcd.parser.PCDConstants
-
End of File.
- eol - Variable in exception org.biopcd.parser.ParseException
-
The end of line string for this machine.
- EOL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- equals(Object) - Method in class org.biopcd.parser.SystemToken
-
Tests for equality.
- exec - Variable in class org.biopcd.parser.PCDObject
-
If the exec parameter in a PCD file is set, this variable will
also be set.
- ExpandBuff(boolean) - Method in class org.biopcd.parser.SimpleCharStream
-
- expectedTokenSequences - Variable in exception org.biopcd.parser.ParseException
-
Each entry in this array is an array of integers.
- generateParseException() - Method in class org.biopcd.parser.PCD
-
Generate ParseException.
- getBeginColumn() - Method in class org.biopcd.parser.SimpleCharStream
-
Get token beginning column number.
- getBeginLine() - Method in class org.biopcd.parser.SimpleCharStream
-
Get token beginning line number.
- getColumn() - Method in class org.biopcd.parser.SimpleCharStream
-
Deprecated.
- getCurrentPWD() - Static method in class org.biopcd.parser.PCD
-
Gets the present working directory "PWD" for all PCD widgets
(this does NOT change CURRENT_DIR!) This value can be used to
cache which directory file dialog boxes should use as their
"current working directory"
- getEndColumn() - Method in class org.biopcd.parser.SimpleCharStream
-
Get token end column number.
- getEndLine() - Method in class org.biopcd.parser.SimpleCharStream
-
Get token end line number.
- GetImage() - Method in class org.biopcd.parser.SimpleCharStream
-
Get token literal value.
- getIndent() - Method in class org.biopcd.parser.PCDTokenManager
-
Returns the current indentation level
- getInstance() - Method in class org.biopcd.widgets.ChoiceList
-
Creates a new widget instance of the widget
A widget instance is an object that stores the value of a widget past
after the widget has been closed.
- getInstance() - Method in class org.biopcd.widgets.Chooser
-
Creates a new widget instance of the widget
A widget instance is an object that stores the value of a widget past
after the widget has been closed.
- getInstance() - Method in class org.biopcd.widgets.ComboBoxWidget
-
Creates a new widget instance of the widget
A widget instance is an object that stores the value of a widget past
after the widget has been closed.
- getInstance() - Method in class org.biopcd.widgets.CommandButton
-
Creates a new widget instance of the widget
- getInstance() - Method in class org.biopcd.widgets.ListWidget
-
Creates a new widget instance of the widget
- getInstance() - Method in class org.biopcd.widgets.NumberWidget
-
Creates a new widget instance of the widget
A widget instance is an object that stores the value of a widget past
after the widget has been closed.
- getInstance() - Method in class org.biopcd.widgets.PanelWidget
-
Creates a new widget instance of the widget
- getInstance() - Method in class org.biopcd.widgets.TabbedWidget
-
Creates a new widget instance of the widget
- getInstance() - Method in class org.biopcd.widgets.TempFile
-
Creates a new widget instance of the widget
- getInstance() - Method in class org.biopcd.widgets.TextAreaWidget
-
Creates a new widget instance of the widget
A widget instance is an object that stores the value of a widget past
after the widget has been closed.
- getInstance() - Method in class org.biopcd.widgets.TextWidget
-
Creates a new widget instance of the widget.
- getInstance() - Method in interface org.biopcd.widgets.Widget
-
Creates a new widget instance of the widget
- getJFrame() - Method in class org.biopcd.parser.RunWindow
-
This method returns a Component object, such as
a JFrame or JDialog object, which can be used as
a parent window object for modal child windows.
- getJFrame() - Method in interface org.biopcd.widgets.CloseableWindow
-
This method returns a Component object, such as
a JFrame or JDialog object, which can be used as
a parent window object for modal child windows.
- getLine() - Method in class org.biopcd.parser.SimpleCharStream
-
Deprecated.
- getMessage() - Method in error org.biopcd.parser.TokenMgrError
-
You can also modify the body of this method to customize your error messages.
- getNextToken() - Method in class org.biopcd.parser.PCD
-
Get the next Token.
- getNextToken() - Method in class org.biopcd.parser.PCD.PCDMetaTokenManager
-
- getNextToken() - Method in class org.biopcd.parser.PCDTokenManager
-
Get the next Token.
- getSourceActions(JComponent) - Method in class org.biopcd.widgets.WidgetTransferHandler
-
This is queried to see whether the component can be copied,
moved, both or neither.
- GetSuffix(int) - Method in class org.biopcd.parser.SimpleCharStream
-
Get the suffix.
- getTabSize(int) - Method in class org.biopcd.parser.SimpleCharStream
-
- getToken(int) - Method in class org.biopcd.parser.PCD
-
Get the specific Token.
- getTransferData(DataFlavor) - Method in class org.biopcd.widgets.WidgetGenerator
-
One of three methods defined by the Transferable interface.
- getTransferDataFlavors() - Method in class org.biopcd.widgets.WidgetGenerator
-
One of three methods defined by the Transferable interface.
- getValue() - Method in class org.biopcd.parser.Token
-
An optional attribute value of the Token.
- getValue() - Method in class org.biopcd.widgets.WidgetInstance
-
Returns the value stored by the WidgetInstance object.
- name - Variable in class org.biopcd.parser.PCDObject
-
The menu item name for the current PCD file program
- name - Variable in class org.biopcd.widgets.SimpleWidget
-
The PCD variable name (this name can be referenced in the command
using the % symbol; for example, if the name value was set to "A",
the value of this widget could be accessed by using %A% (lower or
upper-case) within the PCD menu command string.
- nameCount - Static variable in class org.biopcd.widgets.WidgetGenerator
-
A name counter used to help ensure that each dropped widget has a unique
default name.
- newToken(int, String) - Static method in class org.biopcd.parser.Token
-
Returns a new Token object, by default.
- newToken(int) - Static method in class org.biopcd.parser.Token
-
- next - Variable in class org.biopcd.parser.Token
-
A reference to the next regular (non-special) token from the input
stream.
- nl() - Method in class org.biopcd.parser.PCD
-
Matches new line characters including preceding whitespace
- NL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- Node - Interface in org.biopcd.parser
-
- nodeArity() - Method in class org.biopcd.parser.JJTPCDState
-
- nodeCreated() - Method in class org.biopcd.parser.JJTPCDState
-
- Number() - Method in class org.biopcd.parser.PCD
-
Parses a non-decimal number from a PCD file into a Java integer
- NUMBER - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- numberFields(int, String) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any number field.
- NumberWidget - Class in org.biopcd.widgets
-
Wraps component(s) for selecting numeric values.
- NumberWidget(String) - Constructor for class org.biopcd.widgets.NumberWidget
-
Creates a new instance of a number chooser widget
(this specific constructor is used by the PCD editor ONLY!).
- NumberWidget(String, String, int, int, int) - Constructor for class org.biopcd.widgets.NumberWidget
-
Creates a new instance of a number chooser widget
(or simply, number widget)
- Panel(int, Map<String, Widget>, PCDIO) - Method in class org.biopcd.parser.PCD
-
Generates a non-tabbed panel based on reading the panel tag from the PCD
file.
- PanelWidget - Class in org.biopcd.widgets
-
A panel widget enables a PCD menu to have panels with sub-widgets.
- PanelWidget() - Constructor for class org.biopcd.widgets.PanelWidget
-
Creates a new empty instance of a panel widget
(this specific constructor is used by the PCD editor ONLY!).
- PanelWidget(Map<String, Widget>) - Constructor for class org.biopcd.widgets.PanelWidget
-
Creates a new instance of a panel widget
- Param(int, Map<String, Widget>, PCDIO) - Method in class org.biopcd.parser.PCD
-
Generates a parameter component according to the PCD file's
<T_PARAM> production(s).
- parent - Variable in class org.biopcd.parser.SimpleNode
-
- ParseDBConnect() - Method in class org.biopcd.parser.PCD
-
Parses an SQL database production
- ParseException - Exception in org.biopcd.parser
-
This exception is thrown when parse errors are encountered.
- ParseException(Token, int[][], String[]) - Constructor for exception org.biopcd.parser.ParseException
-
This constructor is used by the method "generateParseException"
in the generated parser.
- ParseException() - Constructor for exception org.biopcd.parser.ParseException
-
The following constructors are for use by you for whatever
purpose you can think of.
- ParseException(String) - Constructor for exception org.biopcd.parser.ParseException
-
Constructor with message.
- parseFullMenu(Map<String, Map<String, PCDObject>>, int, File, PCDIO, JFrame) - Method in class org.biopcd.parser.PCD
-
Parses a PCD menu.
- parseMenuItem(int, File, PCDIO) - Method in class org.biopcd.parser.PCD
-
Parses a PCD menu item.
- parser - Variable in class org.biopcd.parser.SimpleNode
-
- PCD - Class in org.biopcd.parser
-
A class used to parse PCD files into BioLegato.
- PCD(InputStream) - Constructor for class org.biopcd.parser.PCD
-
Constructor with InputStream.
- PCD(InputStream, String) - Constructor for class org.biopcd.parser.PCD
-
Constructor with InputStream and supplied encoding
- PCD(Reader) - Constructor for class org.biopcd.parser.PCD
-
Constructor.
- PCD(PCDTokenManager) - Constructor for class org.biopcd.parser.PCD
-
Constructor with generated Token Manager.
- PCD.ARCH - Enum in org.biopcd.parser
-
An enumeration representing all of the system architectures
detectable by BioLegato.
- PCD.ListType - Enum in org.biopcd.parser
-
An enumeration to store which type of list to create using list
parameters.
- PCD.OS - Enum in org.biopcd.parser
-
An enumeration representing all of the operating systems
detectable by BioLegato.
- PCD.PCDMetaTokenManager - Class in org.biopcd.parser
-
- PCDConstants - Interface in org.biopcd.parser
-
Token literal values and constants.
- PCDIO - Interface in org.biopcd.parser
-
PCD I/O Canvas.
- PCDObject - Class in org.biopcd.parser
-
Objects representing an entire PCD menu.
- PCDObject(File, String, String, String, String, Set<SystemToken>, Map<String, Widget>) - Constructor for class org.biopcd.parser.PCDObject
-
Creates a new PCD object.
- pcdOut(int, Appendable) - Method in class org.biopcd.sql.JDBCDBConnection
-
Writes the BioPCD representation of the PCD SQL command
- pcdOut(int, Appendable) - Method in class org.biopcd.sql.PCDSQL
-
Writes the BioPCD representation of the PCD SQL command
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.ChoiceList
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.Chooser
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.ComboBoxWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.CommandButton
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.DirectoryChooser
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.FileChooser
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable, String) - Method in class org.biopcd.widgets.ListWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.NumberWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.PanelWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.SimpleWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.TabbedWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.TempFile
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.TextAreaWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable, String) - Method in class org.biopcd.widgets.TextAreaWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in class org.biopcd.widgets.TextWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable, String) - Method in class org.biopcd.widgets.TextWidget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- pcdOut(int, Appendable) - Method in interface org.biopcd.widgets.Widget
-
Writes the BioPCD representation of the menu widget to a writer object
(see BioLegato's BioPCD editor for more details)
- PCDSQL - Class in org.biopcd.sql
-
(EXPERIMENTAL!)
A class to store SQL queries read in by PCD.
- PCDSQL(JDBCDBConnection, String, boolean) - Constructor for class org.biopcd.sql.PCDSQL
-
Creates a new PCD SQL query object.
- PCDTokenManager - Class in org.biopcd.parser
-
Token Manager.
- PCDTokenManager(SimpleCharStream) - Constructor for class org.biopcd.parser.PCDTokenManager
-
Constructor.
- PCDTokenManager(SimpleCharStream, int) - Constructor for class org.biopcd.parser.PCDTokenManager
-
Constructor.
- PCDTreeConstants - Interface in org.biopcd.parser
-
- PCDVisitor - Interface in org.biopcd.parser
-
- peekNode() - Method in class org.biopcd.parser.JJTPCDState
-
- popNode() - Method in class org.biopcd.parser.JJTPCDState
-
- PreProcess - Class in org.biopcd.parser
-
This package is for code to pre-process a blmenu file, prior to parsing PCD.
- PreProcess() - Constructor for class org.biopcd.parser.PreProcess
-
- prevCharIsCR - Variable in class org.biopcd.parser.SimpleCharStream
-
- prevCharIsLF - Variable in class org.biopcd.parser.SimpleCharStream
-
- pushNode(Node) - Method in class org.biopcd.parser.JJTPCDState
-
- setCurrentPWD(File) - Static method in class org.biopcd.parser.PCD
-
Sets the present working directory "PWD" for all PCD widgets
(this does NOT change CURRENT_DIR!) This value can be used to
cache which directory file dialog boxes should use as their
"current working directory"
- setDebugStream(PrintStream) - Method in class org.biopcd.parser.PCDTokenManager
-
Set debug output.
- setTabSize(int) - Method in class org.biopcd.parser.SimpleCharStream
-
- setValue(String) - Method in class org.biopcd.widgets.ChoiceList
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.Chooser
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.ComboBoxWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.CommandButton
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.ListWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.NumberWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.PanelWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.TabbedWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.TempFile
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.TextAreaWidget
-
Changes the current value for the widget.
- setValue(String) - Method in class org.biopcd.widgets.TextWidget
-
Changes the current value for the widget.
- setValue(String) - Method in interface org.biopcd.widgets.Widget
-
Changes the current value for the widget.
- shellCommand(String, String) - Static method in class org.biopcd.parser.CommandThread
-
Runs simple shell commands.
- SIGN - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- SimpleCharStream - Class in org.biopcd.parser
-
An implementation of interface CharStream, where the stream is assumed to
contain only ASCII characters (without unicode processing).
- SimpleCharStream(Reader, int, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(Reader, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(Reader) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream, String, int, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream, int, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream, String, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream, int, int) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream, String) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleCharStream(InputStream) - Constructor for class org.biopcd.parser.SimpleCharStream
-
Constructor.
- SimpleNode - Class in org.biopcd.parser
-
- SimpleNode(int) - Constructor for class org.biopcd.parser.SimpleNode
-
- SimpleNode(PCD, int) - Constructor for class org.biopcd.parser.SimpleNode
-
- SimpleWidget - Class in org.biopcd.widgets
-
An abstract class to relate widget variables and
invisible variables (such as temporary files).
- SimpleWidget(String) - Constructor for class org.biopcd.widgets.SimpleWidget
-
Creates a new instance of the abstract class SimpleWidget
- SP - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- specialToken - Variable in class org.biopcd.parser.Token
-
This field is used to access special tokens that occur prior to this
token, but after the immediately preceding regular (non-special) token.
- stateChanged(ChangeEvent) - Method in class org.biopcd.widgets.NumberWidget
-
Handles synchronization between the slider and the spinner.
- staticFlag - Static variable in class org.biopcd.parser.SimpleCharStream
-
Whether parser is static.
- StreamCopier - Class in org.biopcd.parser
-
Stream copier copies the contents of one stream to another.
- StreamCopier(int, InputStream, OutputStream) - Constructor for class org.biopcd.parser.StreamCopier
-
Creates a new instance of the stream copier object
- strindent(String, int) - Static method in class org.biopcd.parser.PreProcess
-
This method indents a string with blanks.
- substituteEnvVars(String) - Static method in class org.biopcd.parser.PreProcess
-
Substitute environment variables in file paths.
- substituteEnvVars(String, Map<String, ?>) - Static method in class org.biopcd.parser.PreProcess
-
Handle "hello ${var}", "${var:default}", find var in replaceMap replace value.
- SwitchTo(int) - Method in class org.biopcd.parser.PCDTokenManager
-
Switch to specified lex state.
- SystemName() - Method in class org.biopcd.parser.PCD
-
Parses a list of supported operating systems in a PCD file
- systems - Variable in class org.biopcd.parser.PCDObject
-
Stores which systems the current PCD file is supported on
- SystemToken - Class in org.biopcd.parser
-
Tokenizes operating system and architecture types for comparison.
- SystemToken(SystemToken.OS, Set<SystemToken.ARCH>) - Constructor for class org.biopcd.parser.SystemToken
-
Creates a new operating system/architectures token.
- SystemToken.ARCH - Enum in org.biopcd.parser
-
Enumeration to represent all of the system architectures
selectable by PCD
- SystemToken.OS - Enum in org.biopcd.parser
-
Enumeration to represent all of the operating systems
selectable by PCD
- T_ACT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_ALL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_AMD64 - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_AND - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_BUTTON - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CANVAS - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CHECK - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CHOICES - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CHOOSER - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CLOSE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CMDNAME - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_COMBOBOX - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CONTENT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_CSV - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_DATABASE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_DECIMAL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_DEFAULT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_DIR - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_DIRECTION - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_EXEC - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_FALSE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_FASTA - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_FILE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_FLAT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_FORMAT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_GDE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_GENBANK - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_HSQLDB - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_ICON - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_IF - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_IN - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_ITEM - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_JDBC - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_LABEL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_LINUX - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_LIST - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_LOGIN - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_MASK - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_MAX - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_MENU - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_MIN - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_MYSQL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_NUMBER - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_OR - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_OSX - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_OUT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_OVERWRITE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_PANEL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_PARAM - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_PROMPT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_QUERY - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_RAW - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SAVE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SELECTION - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SHELL - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SOLARIS - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SPARC - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_SYS - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TAB - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TABSET - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TEMPFILE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TEXT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TEXTAREA - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_THEN - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TIP - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TRUE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TSV - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_TYPE - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_UNIX - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_WINDOWS - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_X86 - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- T_XOR - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- Tab(int, Map<String, Widget>, PCDIO) - Method in class org.biopcd.parser.PCD
-
Generates a tabbed pane based on reading the tab tag from the PCD file.
- TAB - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- TabbedWidget - Class in org.biopcd.widgets
-
A tabbed widget enables a PCD menu to have tabs with sub-widgets.
- TabbedWidget() - Constructor for class org.biopcd.widgets.TabbedWidget
-
Creates a new instance of a tabbed widget
- tabSize - Variable in class org.biopcd.parser.SimpleCharStream
-
- TempFile - Class in org.biopcd.widgets
-
Stores information about the file fields used by the command
- TempFile(String) - Constructor for class org.biopcd.widgets.TempFile
-
Creates a new instance of a text widget
(this specific constructor is used by the PCD editor ONLY!).
- TempFile(String, PCDIO, boolean, boolean, boolean, boolean, String, boolean) - Constructor for class org.biopcd.widgets.TempFile
-
Creates a new instance of temporary file widgets.
- tempfileFields(int, String, PCDIO) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any temporary file field
- testIndent(int) - Method in class org.biopcd.parser.PCD
-
Tests indentation (NOTE: this calls the token manager)
- Text() - Method in class org.biopcd.parser.PCD
-
Parses a text token from a PCD file into a Java String.
- TEXT - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.
- textarea - Variable in class org.biopcd.widgets.TextAreaWidget
-
The text field for obtaining the data
- textAreaFields(int, String) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any textarea
- TextAreaWidget - Class in org.biopcd.widgets
-
A wrapper class used to abstract textareas within command windows.
- TextAreaWidget(String) - Constructor for class org.biopcd.widgets.TextAreaWidget
-
Creates a new instance of a text widget
(this specific constructor is used by the PCD editor ONLY!).
- TextAreaWidget(String, String, String, boolean) - Constructor for class org.biopcd.widgets.TextAreaWidget
-
Creates a new instance of a text widget.
- textfield - Variable in class org.biopcd.widgets.TextWidget
-
The text field for obtaining the data
- textFields(int, String) - Method in class org.biopcd.parser.PCD
-
Parses all of the fields that should be part of any text field
- textString(String) - Static method in class org.biopcd.parser.PCD
-
Parses a text string and converts environment variables to their
corresponding values (e.g.
- TextWidget - Class in org.biopcd.widgets
-
A wrapper class used to abstract text fields within command windows.
- TextWidget(String) - Constructor for class org.biopcd.widgets.TextWidget
-
Creates a new instance of a text widget
(this specific constructor is used by the PCD editor ONLY!).
- TextWidget(String, String, String) - Constructor for class org.biopcd.widgets.TextWidget
-
Creates a new instance of a text widget.
- token - Variable in class org.biopcd.parser.PCD
-
Current token.
- Token - Class in org.biopcd.parser
-
Describes the input token stream.
- Token() - Constructor for class org.biopcd.parser.Token
-
No-argument constructor
- Token(int) - Constructor for class org.biopcd.parser.Token
-
Constructs a new token for the specified Image.
- Token(int, String) - Constructor for class org.biopcd.parser.Token
-
Constructs a new token for the specified Image and Kind.
- token_source - Variable in class org.biopcd.parser.PCD
-
Generated Token Manager.
- tokenImage - Variable in exception org.biopcd.parser.ParseException
-
This is a reference to the "tokenImage" array of the generated
parser within which the parse error occurred.
- tokenImage - Static variable in interface org.biopcd.parser.PCDConstants
-
Literal token values.
- TokenMgrError - Error in org.biopcd.parser
-
Token Manager Error.
- TokenMgrError() - Constructor for error org.biopcd.parser.TokenMgrError
-
No arg constructor.
- TokenMgrError(String, int) - Constructor for error org.biopcd.parser.TokenMgrError
-
Constructor with message and reason.
- TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error org.biopcd.parser.TokenMgrError
-
Full Constructor.
- tooltip - Variable in class org.biopcd.parser.PCDObject
-
The menu item tooltip text for the current PCD file program
- toString() - Method in class org.biopcd.parser.SimpleNode
-
- toString(String) - Method in class org.biopcd.parser.SimpleNode
-
- toString() - Method in class org.biopcd.parser.Token
-
Returns the image.
- value - Variable in class org.biopcd.parser.SimpleNode
-
- value - Variable in class org.biopcd.widgets.TextAreaWidget
-
the default value for the text field
- value - Variable in class org.biopcd.widgets.TextWidget
-
the default value for the text field
- valueOf(String) - Static method in enum org.biopcd.parser.PCD.ARCH
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.biopcd.parser.PCD.ListType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.biopcd.parser.PCD.OS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.biopcd.parser.SystemToken.ARCH
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.biopcd.parser.SystemToken.OS
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum org.biopcd.parser.PCD.ARCH
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.biopcd.parser.PCD.ListType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.biopcd.parser.PCD.OS
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.biopcd.parser.SystemToken.ARCH
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.biopcd.parser.SystemToken.OS
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values - Variable in class org.biopcd.widgets.ListWidget
-
The list of choice values
- visit(SimpleNode, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTparseFullMenu, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTparseMenuItem, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTBody, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTContent, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTTab, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTPanel, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTAct, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTParam, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTbuttonFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTlistFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTtextFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTtextAreaFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTnumberFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTdecimalFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTfileFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTdirFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTtempfileFields, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTFileFormat, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTSystemName, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTArchList, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTArchName, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTParseDBConnect, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTFullSQLQuery, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTIdent, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTText, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTDecimal, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTNumber, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- visit(ASTBool, Object) - Method in interface org.biopcd.parser.PCDVisitor
-
- wclass - Variable in class org.biopcd.widgets.WidgetGenerator
-
The class the widget generator will generate new instances
of when dropped.
- Widget - Interface in org.biopcd.widgets
-
An interface to relate widget variables and invisible variables (such as
temporary files).
- WIDGET_ICON - Static variable in class org.biopcd.widgets.ChoiceList
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.Chooser
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.ComboBoxWidget
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.CommandButton
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.DirectoryChooser
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.FileChooser
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.NumberWidget
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.PanelWidget
-
The icon for the widget.
- WIDGET_ICON - Static variable in class org.biopcd.widgets.TabbedWidget
-
The icon for the widget.
- WIDGET_ICON - Static variable in class org.biopcd.widgets.TempFile
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.TextAreaWidget
-
The icon for the widget
- WIDGET_ICON - Static variable in class org.biopcd.widgets.TextWidget
-
The icon for the widget
- WidgetGenerator - Class in org.biopcd.widgets
-
Abstract interface to relate widget variables and invisible variables
(such as temporary files)
Acknowledgement - Bryan E.
- WidgetGenerator(JFrame, Icon, String, Class) - Constructor for class org.biopcd.widgets.WidgetGenerator
-
Creates a new WidgetGenerator instance.
- WidgetInstance - Class in org.biopcd.widgets
-
The corresponding widget instance, to store variable information
until the current command is finished execution.
- WidgetInstance(Object) - Constructor for class org.biopcd.widgets.WidgetInstance
-
Creates a new widget instance for storing variable information
for the command (until command completion)
- widgetList - Variable in class org.biopcd.parser.PCDObject
-
The widget list to use for running the current PCD command.
- widgets - Variable in class org.biopcd.parser.RunWindow
-
List of widgets for the window.
- widgets - Variable in class org.biopcd.widgets.CommandButton
-
The hash map containing all of the widgets to be used
as parameters for the button.
- WidgetTransferHandler - Class in org.biopcd.widgets
-
Widget transfer handler - used for dragging and dropping Widgets
Acknowledgement - Bryan E.
- WidgetTransferHandler() - Constructor for class org.biopcd.widgets.WidgetTransferHandler
-
Creates a new WidgetTransferHandler object.
- writeFile(String, Appendable, boolean) - Method in interface org.biopcd.parser.PCDIO
-
Writes data out from the canvas.
- WSP - Static variable in interface org.biopcd.parser.PCDConstants
-
RegularExpression Id.