Package | Description |
---|---|
org.biolegato.sequence.canvas | |
org.biolegato.sequence.data |
Modifier and Type | Method and Description |
---|---|
void |
SequenceTextArea.readIn(DataFormat format,
java.util.Scanner source,
boolean overwrite)
Reads contents into the text area.
|
void |
SequenceList.readIn(DataFormat format,
java.util.Scanner source,
boolean overwrite)
Reads data into the sequence list.
|
void |
SequenceCanvasObject.readIn(DataFormat format,
java.util.Scanner source,
boolean overwrite)
Reads contents into the current sequence canvas object.
|
void |
SequenceCanvas.writeFile(DataFormat format,
java.lang.Appendable out,
boolean forceall)
Writes data out from the canvas.
|
void |
SequenceTextArea.writeOut(DataFormat fmt,
java.lang.Appendable dest)
Writes the current contents of the canvas object to an Appendable object.
|
void |
SequenceList.writeOut(DataFormat fmt,
java.lang.Appendable dest)
Writes the selected sequences out to an appendable object
|
void |
SequenceCanvasObject.writeOut(DataFormat format,
java.lang.Appendable dest)
Writes the current contents of the canvas object to an Appendable object.
|
Modifier and Type | Class and Description |
---|---|
class |
FastAFile
FastA file format parser.
|
class |
GDEFile
This class acts as a parser/translator for standard GDE files.
|
class |
GDEFlatfile
This class acts as a parser/translator for GDE flat files.
|
class |
GenBankFile2008
This class acts as a parser/translator for GenBank files (using the file
specification current to 2008).
|
Modifier and Type | Field and Description |
---|---|
static DataFormat |
DataFormat.FASTA
A static final object used for handling FastA files.
|
static DataFormat[] |
DataFormat.FORMAT_LIST
The list of available file formats
|
static DataFormat |
DataFormat.GDEFILE
A static final object used for handling normal GDE files.
|
static DataFormat |
DataFormat.GDEFLAT
A static final object used for handling GDE flat-files.
|
static DataFormat |
DataFormat.GENBANK
A static final object used for handling GenBank files.
|
Modifier and Type | Method and Description |
---|---|
static DataFormat |
DataFormat.autodetect(java.util.Scanner data)
Used to auto-detect file formats.
|
static DataFormat |
DataFormat.getFormat(java.lang.String hashname)
Finds the file type that corresponds to a given GDE/PCD file format
hashname (returns the GDE flat file, by default, if not successful).
|
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