Package | Description |
---|---|
org.biolegato.sequence.canvas | |
org.biolegato.sequence.data |
Modifier and Type | Field and Description |
---|---|
protected Dataset |
SequenceTextArea.datamodel
This reference is used to connect the data model/Dataset sequence object
container to the text area.
|
protected Dataset |
SequenceList.datamodel
Used for the relationship between the data model and the list.
|
Constructor and Description |
---|
SequenceList(SequenceCanvas canvas,
Dataset datamodel)
Constructs a new SequenceList
|
SequenceTextArea(SequenceCanvas canvas,
Dataset datamodel)
Creates a new instance of a SequenceTextArea.
|
Modifier and Type | Method and Description |
---|---|
void |
DataFormat.convertFrom(Dataset datamodel,
java.util.Scanner data,
int x,
int y)
Converts a string from the given file format into the BioLegato
internal format.
|
boolean |
GenBankFile2008.convertSequence(Dataset datamodel,
java.util.Scanner source,
int x,
int y,
boolean addonly)
Converts a single sequence from a scanner into BioLegato
|
boolean |
GDEFlatfile.convertSequence(Dataset datamodel,
java.util.Scanner source,
int x,
int y,
boolean addonly)
Translates a single sequence from a scanner into BioLegato
|
boolean |
GDEFile.convertSequence(Dataset datamodel,
java.util.Scanner source,
int x,
int y,
boolean addonly)
Translates a single sequence from a scanner into BioLegato
|
boolean |
FastAFile.convertSequence(Dataset datamodel,
java.util.Scanner source,
int x,
int y,
boolean addonly)
Translates a single sequence from a scanner into BioLegato
|
abstract boolean |
DataFormat.convertSequence(Dataset datamodel,
java.util.Scanner source,
int x,
int y,
boolean addonly)
Converts a single sequence from a scanner into BioLegato.
|
void |
DataFormat.convertTo(java.lang.Appendable destination,
Dataset datamodel,
int y)
Converts data from the BioLegato's sequence canvas internal format
to the given file format specified by the DataFormat object.
|
void |
DataFormat.convertTo(java.lang.Appendable destination,
Dataset datamodel,
int y,
int offset,
int length)
Converts data from the BioLegato's sequence canvas internal format
to the given file format.
|
Constructor and Description |
---|
SequenceWindow(SequenceCanvas canvas,
Dataset datamodel,
javax.swing.JFrame window,
int[] sequences)
Creates a window for editing the properties of selected sequences.
|
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