Index of /~psgendb/birchhomedir/BIRCHDEV/doc/local/pkg/brassica_rnaseq_scripts/programs/bbmap/current/jgi

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]TestLargeKmer.class 2014-03-14 13:34 6.2K 
[ ]SplitSam4Way.class 2014-03-14 13:34 5.0K 
[ ]SplitPairsAndSingles..>2014-03-14 13:34 20K 
[ ]SamToEst.class 2014-03-14 13:34 12K 
[ ]SamToEst$EST.class 2014-03-14 13:34 2.1K 
[ ]SamPileup.class 2014-03-14 13:34 18K 
[ ]RenameReads.class 2014-03-14 13:34 13K 
[ ]ReformatReads.class 2014-03-14 13:34 27K 
[ ]ReformatFasta.class 2014-03-14 13:34 3.0K 
[ ]RedirectTest.class 2014-03-14 13:34 2.8K 
[ ]ReclusterByKmer.class 2014-03-14 13:34 21K 
[ ]ReclusterByKmer$Read..>2014-03-14 13:34 2.7K 
[ ]ReclusterByKmer$Clus..>2014-03-14 13:34 5.5K 
[ ]ReclusterByKmer$Clus..>2014-03-14 13:34 5.7K 
[ ]ReadKmerDepthDistrib..>2014-03-14 13:34 30K 
[ ]ReadKmerDepthDistrib..>2014-03-14 13:34 5.4K 
[ ]ReadKmerDepthDistrib..>2014-03-14 13:34 447  
[ ]RandomGenome.class 2014-03-14 13:34 1.7K 
[ ]RQCFilter.class 2014-03-14 13:34 25K 
[ ]Orf.class 2014-03-14 13:34 3.3K 
[ ]MergeReadHeaders.class 2014-03-14 13:34 14K 
[ ]MatrixMultFloat.class 2014-03-14 13:34 4.5K 
[ ]MatrixMultFloat$Time..>2014-03-14 13:34 1.0K 
[ ]MatrixMultFloat$Mult..>2014-03-14 13:34 1.0K 
[ ]MatrixMult.class 2014-03-14 13:34 4.4K 
[ ]MatrixMult$Timer.class 2014-03-14 13:34 967  
[ ]MatrixMult$MultThrea..>2014-03-14 13:34 972  
[ ]MateReadsMT.class 2014-03-14 13:34 39K 
[ ]MateReadsMT$MateThre..>2014-03-14 13:34 10K 
[ ]MakeLengthHistogram...>2014-03-14 13:34 7.1K 
[ ]MakeCoverageHistogra..>2014-03-14 13:34 8.8K 
[ ]MakeCoverageHistogra..>2014-03-14 13:34 431  
[ ]KmerSample.class 2014-03-14 13:34 1.6K 
[ ]KmerNormalize.class 2014-03-14 13:34 82K 
[ ]KmerNormalize$Proces..>2014-03-14 13:34 19K 
[ ]KmerNormalize$1.class 2014-03-14 13:34 399  
[ ]KmerCoverage.class 2014-03-14 13:34 28K 
[ ]KmerCoverage$Process..>2014-03-14 13:34 7.3K 
[ ]KmerCoverage$1.class 2014-03-14 13:34 395  
[ ]Info.class 2014-03-14 13:34 5.5K 
[ ]FindString.class 2014-03-14 13:34 1.0K 
[ ]FilterReads.class 2014-03-14 13:34 14K 
[ ]FilterReads$1.class 2014-03-14 13:34 391  
[ ]FastaQualToFastq.class 2014-03-14 13:34 3.2K 
[ ]FakeReads.class 2014-03-14 13:34 15K 
[ ]ErrorCorrectMT.class 2014-03-14 13:34 39K 
[ ]ErrorCorrectMT$Proce..>2014-03-14 13:34 7.5K 
[ ]ErrorCorrectMT$1.class 2014-03-14 13:34 403  
[ ]ErrorCorrect.class 2014-03-14 13:34 20K 
[ ]Difference.class 2014-03-14 13:34 1.6K 
[ ]Dedupe2.class 2014-03-14 13:34 26K 
[ ]Dedupe2$Unit.class 2014-03-14 13:34 10K 
[ ]Dedupe2$HashThread2...>2014-03-14 13:34 8.6K 
[ ]Dedupe.class 2014-03-14 13:34 59K 
[ ]Dedupe$UnitOffsetCom..>2014-03-14 13:34 1.0K 
[ ]Dedupe$Unit.class 2014-03-14 13:34 37K 
[ ]Dedupe$Overlap.class 2014-03-14 13:34 14K 
[ ]Dedupe$HashThread.class2014-03-14 13:34 18K 
[ ]Dedupe$ClusterThread..>2014-03-14 13:34 28K 
[ ]Dedupe$ClusterLength..>2014-03-14 13:34 1.2K 
[ ]CountUniqueness.class 2014-03-14 13:34 5.1K 
[ ]CountKmersExact.class 2014-03-14 13:34 27K 
[ ]CountKmersExact$Proc..>2014-03-14 13:34 5.2K 
[ ]CountGC.class 2014-03-14 13:34 10K 
[ ]CalcTrueQuality.class 2014-03-14 13:34 26K 
[ ]BBQC.class 2014-03-14 13:34 27K 
[ ]BBMask.class 2014-03-14 13:34 31K 
[ ]BBMask$MaskSamThread..>2014-03-14 13:34 641  
[ ]BBMask$MaskRepeatThr..>2014-03-14 13:34 1.3K 
[ ]BBMask$MaskLowEntrop..>2014-03-14 13:34 1.5K 
[ ]BBDukF.class 2014-03-14 13:34 47K 
[ ]BBDukF$StringNum.class 2014-03-14 13:34 1.4K 
[ ]BBDukF$ProcessThread..>2014-03-14 13:34 7.2K 
[ ]BBDukF$LoadThread.class2014-03-14 13:34 7.4K 
[ ]AssemblyStatsWrapper..>2014-03-14 13:34 2.1K 
[ ]AssemblyStats2.class 2014-03-14 13:34 32K 
[ ]AssemblyStats2$Tripl..>2014-03-14 13:34 1.6K 
[ ]AddStopTags.class 2014-03-14 13:34 2.0K 
[ ]SplitPairsAndSingles..>2014-03-14 12:31 23K 
[TXT]SamToEst.java 2014-03-14 12:31 14K 
[ ]SamPileup.java 2014-03-14 12:31 20K 
[ ]RenameReads.java 2014-03-14 12:31 14K 
[ ]ReformatReads.java 2014-03-14 12:31 32K 
[ ]ReclusterByKmer.java 2014-03-14 12:31 33K 
[TXT]ReadKmerDepthDistrib..>2014-03-14 12:31 37K 
[ ]RQCFilter.java 2014-03-14 12:31 33K 
[ ]MergeReadHeaders.java 2014-03-14 12:31 14K 
[ ]MateReadsMT.java 2014-03-14 12:31 59K 
[TXT]MakeLengthHistogram...>2014-03-14 12:31 5.4K 
[ ]MakeCoverageHistogra..>2014-03-14 12:31 7.8K 
[ ]KmerNormalize.java 2014-03-14 12:31 128K 
[ ]KmerCoverage.java 2014-03-14 12:31 39K 
[ ]FilterReads.java 2014-03-14 12:31 15K 
[ ]FakeReads.java 2014-03-14 12:31 16K 
[ ]ErrorCorrectMT.java 2014-03-14 12:31 60K 
[TXT]ErrorCorrect.java 2014-03-14 12:31 25K 
[ ]Dedupe2.java 2014-03-14 12:31 45K 
[ ]Dedupe.java 2014-03-14 12:31 179K 
[TXT]CountKmersExact.java 2014-03-14 12:31 37K 
[ ]CountGC.java 2014-03-14 12:31 11K 
[ ]CalcTrueQuality.java 2014-03-14 12:31 33K 
[ ]BBQC.java 2014-03-14 12:31 32K 
[ ]BBMask.java 2014-03-14 12:31 38K 
[ ]BBDukF.java 2014-03-14 12:31 80K 
[TXT]AssemblyStats2.java 2014-03-14 12:31 45K 
[TXT]SplitSam4Way.java 2014-02-11 12:24 5.2K 
[TXT]CountUniqueness.java 2014-01-14 18:19 3.2K 
[ ]TestLargeKmer.java 2014-01-02 14:32 5.0K 
[ ]AddStopTags.java 2014-01-02 11:52 1.1K 
[ ]ReformatFasta.java 2013-12-23 12:30 2.2K 
[TXT]RandomGenome.java 2013-12-23 12:30 1.0K 
[ ]FastaQualToFastq.java 2013-12-23 12:30 2.5K 
[TXT]KmerSample.java 2013-12-16 19:05 3.1K 
[ ]FindString.java 2013-12-16 19:05 499  
[ ]Difference.java 2013-12-16 19:05 728  
[ ]RedirectTest.java 2013-12-16 18:02 1.6K 
[ ]AssemblyStatsWrapper..>2013-12-11 14:34 1.1K 
[TXT]Orf.java 2013-05-13 17:47 2.5K 
[ ]MatrixMultFloat.java 2012-11-02 12:37 5.2K 
[ ]MatrixMult.java 2012-11-02 12:37 5.1K 
[ ]Info.java 2012-09-19 16:13 5.8K