org.biojavax.bio.seq
Interface RichSequenceIterator

All Superinterfaces:

BioEntryIterator, SequenceIterator

All Known Implementing Classes:

HashedFastaIterator, RichSequence.IOTools.SingleRichSeqIterator, RichStreamReader

public interface RichSequenceIterator
extends BioEntryIterator, SequenceIterator

Essentially the same as SequenceIterator. It provides a new method that returns RichSequence objects without the need for explicit casting. Implementations of this interface should always return RichSequence objects for both the nextSequence() and nextRichSequence() methods.

Since:

1.5

Author:

Mark Schreiber, Richard Holland

See Also:

SequenceIterator

Method Summary

RichSequence

nextRichSequence()

Methods inherited from interface org.biojavax.bio.BioEntryIterator

hasNext, nextBioEntry

Methods inherited from interface org.biojava.bio.seq.SequenceIterator

hasNext, nextSequence

Method Detail

nextRichSequence

RichSequence nextRichSequence()
                              throws NoSuchElementException,
                                     BioException

Throws:

NoSuchElementException

BioException