Uses of Interface
org.biojavax.bio.seq.RichFeature

Packages that use RichFeature

org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Uses of RichFeature in org.biojavax.bio.seq

Classes in org.biojavax.bio.seq that implement RichFeature

class

SimpleRichFeature A simple implementation of RichFeature.

Methods in org.biojavax.bio.seq that return RichFeature

static RichFeature	RichFeature.Tools.enrich(Feature f) Takes a normal Feature and attempts to convert it into a RichFeature.
RichFeature	SimpleRichLocation.getFeature() Retrieves the feature this location is associated with.
RichFeature	RichLocation.getFeature() Retrieves the feature this location is associated with.
RichFeature	EmptyRichLocation.getFeature() Retrieves the feature this location is associated with. ALWAYS RETURNS NULL
RichFeature	SimpleRichFeatureRelationship.getObject() Returns the object of this relationship (ie.
RichFeature	RichFeatureRelationship.getObject() Returns the object of this relationship (ie.
RichFeature	SimpleRichFeatureRelationship.getSubject() Gets the feature that this relationship refers to.
RichFeature	RichFeatureRelationship.getSubject() Gets the feature that this relationship refers to.
static RichFeature	RichFeature.Tools.makeEmptyFeature() A way to make a dummy feature

Methods in org.biojavax.bio.seq with parameters of type RichFeature

void	SimpleRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.
void	RichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with.
void	EmptyRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with. NOT IMPLEMENTED
void	CompoundRichLocation.setFeature(RichFeature feature) Sets the feature this location is associated with. If null, that's fine, but you won't be able to persist it to the database until you give it a not-null value. Passes the call on to each of its members in turn.

Constructors in org.biojavax.bio.seq with parameters of type RichFeature

SimpleRichFeatureRelationship(RichFeature object, RichFeature subject, ComparableTerm term, int rank)
Creates a new instance of SimpleRichFeatureRelationship.

Uses of RichFeature in org.biojavax.bio.seq.io

Fields in org.biojavax.bio.seq.io declared as RichFeature

protected RichFeature

RichSeqIOAdapter.emptyFeature This is a dummy feature.

Methods in org.biojavax.bio.seq.io that return RichFeature

RichFeature	SimpleRichSequenceBuilder.getCurrentFeature() Gets the feature currently being created.
RichFeature	RichSeqIOListener.getCurrentFeature() Gets the feature currently being created.
RichFeature	RichSeqIOAdapter.getCurrentFeature()
RichFeature	DebuggingRichSeqIOListener.getCurrentFeature()