Uses of Class
org.biojavax.bio.seq.RichLocation.Strand

Packages that use RichLocation.Strand

org.biojavax.bio.db.biosql	Interface between biojava and biosql databases
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.

Uses of RichLocation.Strand in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql that return RichLocation.Strand

RichLocation.Strand

BioSQLFeatureFilter.ByStrand.getStrand()

Constructors in org.biojavax.bio.db.biosql with parameters of type RichLocation.Strand

BioSQLFeatureFilter.ByStrand(RichLocation.Strand str)
Creates a filter that returns everything on strand str.

Uses of RichLocation.Strand in org.biojavax.bio.seq

Fields in org.biojavax.bio.seq declared as RichLocation.Strand

static RichLocation.Strand	RichLocation.Strand.NEGATIVE_STRAND The negative strand is represented by the symbol '-' and has the number -1.
static RichLocation.Strand	RichLocation.Strand.POSITIVE_STRAND The positive strand is represented by the symbol '+' and has the number 1.
static RichLocation.Strand	RichLocation.Strand.UNKNOWN_STRAND The unknown strand is represented by the symbol '?' and has the number 0.

Methods in org.biojavax.bio.seq that return RichLocation.Strand

static RichLocation.Strand	RichLocation.Strand.forName(String name) Returns the strand object that matches the symbol given.
static RichLocation.Strand	RichLocation.Strand.forValue(int value) Returns the strand object that matches the number given.
RichLocation.Strand	SimpleRichLocation.getStrand() Retrieves the strand associated with this location.
RichLocation.Strand	RichLocation.getStrand() Retrieves the strand associated with this location.
RichLocation.Strand	MultiSourceCompoundRichLocation.getStrand() Retrieves the strand associated with this location.
RichLocation.Strand	EmptyRichLocation.getStrand() Retrieves the strand associated with this location. ALWAYS RETURNS THE UNKNOWN STRAND

Methods in org.biojavax.bio.seq with parameters of type RichLocation.Strand

protected void

SimpleRichLocation.setStrand(RichLocation.Strand strand)

Constructors in org.biojavax.bio.seq with parameters of type RichLocation.Strand

SimpleRichLocation(Position pos, int rank, RichLocation.Strand strand)
Creates a new instance of SimpleRichSequenceLocation that points to a single position.

SimpleRichLocation(Position pos, int rank, RichLocation.Strand strand, CrossRef crossRef)
Creates a new instance of SimpleRichSequenceLocation that points to a single position on another sequence.

SimpleRichLocation(Position min, Position max, int rank, RichLocation.Strand strand)
Creates a new instance of SimpleRichSequenceLocation that points to a range position.

SimpleRichLocation(Position min, Position max, int rank, RichLocation.Strand strand, CrossRef crossRef)
Creates a new instance of SimpleRichSequenceLocation that points to a range position on another sequence.