Uses of Package
org.biojavax.bio.seq.io

Packages that use org.biojavax.bio.seq.io

org.biojavax.bio.db.ncbi	Interfaces to NCBI data.
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.db.ncbi

RichSequenceBuilderFactory
Simple factory for constructing new RichSequenceBuilder objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seq

FastaHeader
This class is used by FastaFormat to determine which fields are in the fasta header.

RichSequenceBuilderFactory
Simple factory for constructing new RichSequenceBuilder objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seq.io

FastaHeader
This class is used by FastaFormat to determine which fields are in the fasta header.

RichSeqIOAdapter
This class implements all methods of RichSeqIOListener and takes no action.

RichSeqIOListener
An interface for classes that listen to BioEntry or RichSequence I/O streams.

RichSequenceBuilder
An interface for objects that can build RichSequences.

RichSequenceBuilderFactory
Simple factory for constructing new RichSequenceBuilder objects.

RichSequenceFormat
Allows a file format to be read/written as RichSequences.

RichSequenceFormat.BasicFormat
Provides a basic format with simple things like line-widths precoded.

RichSequenceFormat.HeaderlessFormat
Provides the basic implementation required for simple header/footer-less files such as Genbank.