Uses of Interface
org.biojavax.ga.Population

Packages that use Population

org.biojavax.ga	Classes to provide a genetic algorithm framework
org.biojavax.ga.functions	GA functions
org.biojavax.ga.impl	Default implementations and abstract classes.

Uses of Population in org.biojavax.ga

Methods in org.biojavax.ga that return Population

Population

GeneticAlgorithm.getPopulation() The registered Population

Methods in org.biojavax.ga with parameters of type Population

void	Population.addOrganisms(Population orgs) Adds the residents of one population to this one
void	GeneticAlgorithm.setPopulation(Population pop) Sets the Population of Organisms to the Algorithm.

Uses of Population in org.biojavax.ga.functions

Methods in org.biojavax.ga.functions that return Population

Population	TournamentSelection.select(Population pop, GeneticAlgorithm genAlg) Standard call to select organisms, will select a number of Organisms corresponding to 75 % of the population.
Population	SelectionFunction.select(Population pop, GeneticAlgorithm genAlg) Selects a Population of Organisms for replication based on their fitness.
Population	SelectionFunction.Threshold.select(Population pop, GeneticAlgorithm genAlg) Selects individuals whose fitness (as determined by the FitnessFunction) is more than the cutoff.
Population	SelectionFunction.SelectAll.select(Population pop, GeneticAlgorithm genAlg)
Population	ProportionalSelection.select(Population pop, GeneticAlgorithm genAlg)
Population	TournamentSelection.selectNIndividuals(Population pop, GeneticAlgorithm ga, int n) This method selects n Organism from the population it is given, using the tournament selection method

Methods in org.biojavax.ga.functions with parameters of type Population

double[]	FitnessFunction.fitness(Organism org, Population pop, GeneticAlgorithm genAlg) Calculates the fitness of org.
Population	TournamentSelection.select(Population pop, GeneticAlgorithm genAlg) Standard call to select organisms, will select a number of Organisms corresponding to 75 % of the population.
Population	SelectionFunction.select(Population pop, GeneticAlgorithm genAlg) Selects a Population of Organisms for replication based on their fitness.
Population	SelectionFunction.Threshold.select(Population pop, GeneticAlgorithm genAlg) Selects individuals whose fitness (as determined by the FitnessFunction) is more than the cutoff.
Population	SelectionFunction.SelectAll.select(Population pop, GeneticAlgorithm genAlg)
Population	ProportionalSelection.select(Population pop, GeneticAlgorithm genAlg)
Population	TournamentSelection.selectNIndividuals(Population pop, GeneticAlgorithm ga, int n) This method selects n Organism from the population it is given, using the tournament selection method

Uses of Population in org.biojavax.ga.impl

Classes in org.biojavax.ga.impl that implement Population

class	AbstractPopulation Most Population implementations will want to inherit from here.
class	SimplePopulation Simple concrete implementation of the Population interface

Fields in org.biojavax.ga.impl declared as Population

protected Population

AbstractGeneticAlgorithm.population

Methods in org.biojavax.ga.impl that return Population

Population

AbstractGeneticAlgorithm.getPopulation()

Methods in org.biojavax.ga.impl with parameters of type Population

void	AbstractPopulation.addOrganisms(Population orgs)
void	AbstractGeneticAlgorithm.setPopulation(Population pop)

Constructors in org.biojavax.ga.impl with parameters of type Population

SimpleGeneticAlgorithm(Population pop, MutationFunction mutFunc, CrossOverFunction xFunc, SelectionFunction selFunc)