eexpr {ballgown} | R Documentation |
extract exon-level expression measurements from ballgown objects
eexpr(x, meas = "rcount") ## S4 method for signature 'ballgown' eexpr(x, meas = "rcount")
x |
a ballgown object |
meas |
type of measurement to extract. Can be "rcount", "ucount", "mrcount", "cov", "mcov", or "all". Default "rcount". |
exon-by-sample matrix containing exon-level expression values
(measured by meas
). If meas
is "all"
, or
x@RSEM
is TRUE, a data frame is returned, containing all
measurements and location information.
data(bg) exon_rcount_matrix = eexpr(bg) exon_ucount_matrix = eexpr(bg, 'ucount') exon_data_frame = eexpr(bg, 'all')