BIRCH Version 3.60

NEW:

  • First time setup tutorial for MATE desktop


BIRCH: A user-oriented, locally-customizable, bioinformatics system
Brian Fristensky
BMC Bioinformatics 2007, 8:54 (9 February 2007)
[Abstract] [ PDF]

BIRCH is

  • a comprehensive desktop bioinformatics system which comes with many of the commonly-used bioinformatics programs pre-installed
  • a framework of tools, files, and documentation for organizing and managing a bioinformatics core facility
  • an expandable system that allows you to merge 3rd party programs and documentation seamlessly into the standard BIRCH distribution

DOWNLOAD BIRCH NOW



New in the current release:


Development Version 3.60 (July 14, 2019)

NEW  and Updated Software applications and features:


DELETED applications:


Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)




Version 3.50
(June 20, 2019)


NEW  and Updated Software applications and features:

This release represents a massive addition to the BIRCH system, with complete sets of tools for genome and transcriptome assembly and gene expression data. Most of these capabilities are unified in a new BioLegato interface called blreads. Because most genome and transcriptome tasks work with numerous files, blreads presents the files as a spreadsheet (akin to a file manager) in which files can be selected as input for a wide variety of programs. Because these tasks are time-consuming, notification of completion by email is supported.

DELETED applications:

none

Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)




Version 3.40 (May 2,2017)

NEW  and Updated Software applications and features:

DELETED applications:


Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)




Version 3.30
(November 21,2016)


NEW  and Updated Software applications and features:



DELETED applications:



Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)



version 3.20
(May 18,2016)


NEW  and Updated Software applications and features:


DELETED applications:



Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)


version 3.15 (January 6,2016)

NEW  and Updated Software applications and features:


DELETED applications/features:


Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)


version 3.10 (July 20,2015)

NEW  and Updated Software applications:


DELETED applications:


Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)


version 3.00 (May 2,2015)

NEW  and Updated Software applications:

DELETED applications:


Bug Fixes (See BIRCH Bugzilla at Bioinformatics.org: http://www.bioinformatics.org/bugs/?group_id=543)



version 2.96
(May 21, 2013)

NEW  and Updated Software applications:



DELETED applications:
Bug Fixes  


version 2.95 (September 24, 2012)

NEW  and Updated Software applications:
DELETED applications:
BIRCH     


version 2.9

version 2.8.6


version 2.8.5


version 2.8