BIRCH Version 2.9 NEW: Improvements to BioLegato Phylip updated to version 3.69 bug fixes

BIRCH: A user-oriented, locally-customizable, bioinformatics system Brian Fristensky BMC Bioinformatics 2007, 8:54 (9 February 2007) [Abstract] [ PDF]

BIRCH is a comprehensive desktop bioinformatics system which comes with many of the commonly-used bioinformatics programs pre-installed a framework of tools, files, and documentation for organizing and managing a bioinformatics core facility an expandable system that allows you to merge 3rd party programs and documentation seamlessly into the standard BIRCH distribution BIRCH Web site: http://home.cc.umanitoba.ca/~psgendb

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New in the current release:

• fixed a bug in the script that runs mrtrans that prevented mrtrans from running on some OSX systems.
• ribosome - In the previous release, the new version of ribosome was omitted from OSX and linux-intel binaries. The new version is now available on all platforms. (Bugzilla# 1167)
• The Phylip package has been upgraded to version 3.69.
• The BIRCH launcher now prompts for a working folder when started at the command line. This results in all programs launched from the launcher opening in the working directory, rather than the home directory.
• acedb - on some Mac and Linux systems, acedb failed to launch because of missing libraries. These libraries have been added to the current release. (Bugzilla #1156)
• bioLegato.0.7.7a:
• fixed a bug that prevented canvas from appearing
• fixed a bug that prevented sliders in menus from having negative values (Bugzilla# 1160)
• fixed a bug that prevented bioLegatfrom reading some legacy .gde files. If the sequence contained newline characters, those were included in the sequence (Bugzilla# 1161)
• fixed a bug in which pseudo-GenBank files generated by GDE were not read
• fixed a bug which prevented the Documentation menu from being used. (Bugzilla# 1160)

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