dbsout | index /home/u11/umhameld/workspace/birchscripts/dbsout.py |
July 18, 2008, Dr. Brian Fristensky, University of Manitoba
dbsout.py - Extract hit lines or ID#'s from BLAST or FASTA output
Send output to files or windows.
Synopsis:
dbsout.py infile [-e ethreshold] -d destination [outfile]
IFN - output from BLAST or FASTA
-e - only select output for which the ETHRESHOLD is
<= ethreshold
-d - destination: one of the folloeing:
textedit - open output files in text editor
specified by the $GDE_TEXTEDIT environment variable
files - write to files, using the basename
specified by destination.
GDE - send hit lines to a GDE window
outfile - basename for outputfile(s)
@modified: May 26 2010
@author: Dale Hamel
@contact: umhameld@cc.umanitoba.ca
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BM = <birchlib.Birchmod instance> PROGRAM = 'dbsout.py : ' USAGE = '\n\tUSAGE: dbsout.py infile [-e ethreshold] -d destination [outfile]' blib = '/home/u11/umhameld/public_html/local/pylib/' |