Find EDAM ontology terms by is_identifier_of relation
Version: EMBOSS:6.4.0.0

   Standard (Mandatory) qualifiers:
  [-identifier]        string     Identifier(s) to search for in ontology (Any
                                  string)
  [-outfile]           outobo     [*.edamisid] Output ontology term file name

   Additional (Optional) qualifiers:
   -namespace          menu       [*] By default all terms are returned.
                                  Searches can be limited to one or a few
                                  namespaces. (Values: data (Data entity);
                                  entity (Biological entity); format (Data
                                  format); identifier (Identifier); operation
                                  (Bioinformatics operation); resource (Data
                                  resource); topic (Field of bioinformatics
                                  study))

   Advanced (Unprompted) qualifiers:
   -sensitive          boolean    [N] By default, the query keywords are
                                  matched against the EDAM term names (and
                                  synonyms) only. This option also matches the
                                  keywords against the EDAM term definitions
                                  and will therefore (typically) report more
                                  matches.
   -subclasses         boolean    [N] Extend the query matches to include all
                                  terms which are specialisations (EDAM
                                  sub-classes) of the matched type.
   -obsolete           boolean    [N] The default behaviour is to not use or
                                  return obsolete terms. This option if set
                                  will include all terms.

   Associated qualifiers:

   "-outfile" associated qualifiers
   -odirectory2        string     Output directory
   -oformat2           string     Ontology term output format

   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write first file to standard output
   -filter             boolean    Read first file from standard input, write
                                  first file to standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options and exit. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
   -version            boolean    Report version number and exit

[Term]
id: EDAM:0001063
name: Sequence identifier
namespace: identifier
def: An identifier of molecular sequence(s) or entries from a molecular sequence database.
subset: identifier
is_a: EDAM:0000976 ! Identifier (typed)
relationship: is_identifier_of EDAM:0002044 ! Sequence

[Term]
id: EDAM:0001094
name: Sequence type
namespace: data
def: A label (text token) describing a type of molecular sequence.
comment: Sequence type might reflect the molecule (protein, nucleic acid etc) or the sequence itself (gapped, ambiguous etc).
subset: data
is_a: EDAM:0002100 ! Type
is_a: EDAM:0002534 ! Sequence parameter
relationship: is_identifier_of EDAM:0002044 ! Sequence
relationship: is_identifier_of EDAM:0000849 ! Sequence record

[Term]
id: EDAM:0001066
name: Sequence alignment ID
namespace: identifier
def: Identifier of a molecular sequence alignment, for example a record from an alignment database.
subset: identifier
is_a: EDAM:0000976 ! Identifier (typed)
is_a: EDAM:0002091 ! Accession
relationship: is_identifier_of EDAM:0000863 ! Sequence alignment

[Term]
id: EDAM:0001099
name: UniProt accession (extended)
namespace: identifier
def: Accession number of a UniProt (protein sequence) database entry. May contain version or isoform number.
subset: identifier
regex: "[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]" "[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]" "[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9].[0-9]+" "[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9].[0-9]+" "[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]-[0
is_a: EDAM:0003021 ! UniProt accession
relationship: is_identifier_of EDAM:0001208 ! Protein sequence
relationship: is_identifier_of EDAM:0000849 ! Sequence record

[Term]
id: EDAM:0002621
name: TAIR accession (protein)
namespace: identifier
def: Identifier of a protein sequence from the TAIR database.
subset: identifier
regex: "AASequence:[0-9]{10}"
is_a: EDAM:0001096 ! Sequence identifier (protein)


  [Part of this file has been deleted for brevity]


[Term]
id: EDAM:0001115
name: Sequence profile ID
namespace: identifier
def: Identifier of a sequence profile.
comment: A sequence profile typically represents a sequence alignment.
subset: identifier
is_a: EDAM:0000976 ! Identifier (typed)
is_a: EDAM:0002091 ! Accession
relationship: is_identifier_of EDAM:0001354 ! Sequence profile

[Term]
id: EDAM:0001096
name: Sequence accession (protein)
namespace: identifier
def: Accession number of a protein sequence database entry.
subset: identifier
synonym: "Protein sequence accession number" EXACT []
is_a: EDAM:0001093 ! Sequence accession
relationship: is_identifier_of EDAM:0002976 ! Protein sequence

[Term]
id: EDAM:0001097
name: Sequence accession (nucleic acid)
namespace: identifier
def: Accession number of a nucleotide sequence database entry.
subset: identifier
synonym: "Nucleotide sequence accession number" EXACT []
is_a: EDAM:0001093 ! Sequence accession
relationship: is_identifier_of EDAM:0002977 ! Nucleotide sequence

[Term]
id: EDAM:0001064
name: Sequence set ID
namespace: identifier
def: An identifier of a set of molecular sequence(s).
subset: identifier
is_a: EDAM:0000976 ! Identifier (typed)
is_a: EDAM:0002091 ! Accession
relationship: is_identifier_of EDAM:0000850 ! Sequence set

[Term]
id: EDAM:0001112
name: Sequence cluster ID
namespace: identifier
def: An identifier of a cluster of molecular sequence(s).
subset: identifier
is_a: EDAM:0001064 ! Sequence set ID
relationship: is_identifier_of EDAM:0001235 ! Sequence cluster