birch - cuffdiff


cuffdiff - Compare expression levels of genes and transcripts in RNA-Seq experiments
Launching the program
command
cuffdiff [options] <transcripts.gtf> <sample1_hits.sam> <sample2_hits.sam> [... sampleN_hits.sam]
Documentation
Manual
$doc/ccb/cuffdiff.man
Data
Sample input
Sample output
Package: CCB
Platforms: linux-x86_64