org.biojava.bio.program.ssbind
Class HitStAXHandler

java.lang.Object
  org.biojava.utils.stax.StAXContentHandlerBase
      org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
          org.biojava.bio.program.ssbind.HitStAXHandler

All Implemented Interfaces:

StAXContentHandler

public class HitStAXHandler
extends SeqSimilarityStAXHandler

AlignmentStAXHandler handles the Hit element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

Field Summary

static StAXHandlerFactory

HIT_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

ssContext

Method Summary

protected void	handleEndElement(String nsURI, String localName, String qName)
protected void	handleStartElement(String nsURI, String localName, String qName, Attributes attrs)

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

addHandler, endElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HIT_HANDLER_FACTORY

public static final StAXHandlerFactory HIT_HANDLER_FACTORY

Method Detail

handleStartElement

protected void handleStartElement(String nsURI,
                                  String localName,
                                  String qName,
                                  Attributes attrs)
                           throws SAXException

Overrides:

handleStartElement in class SeqSimilarityStAXHandler

Throws:

SAXException

handleEndElement

protected void handleEndElement(String nsURI,
                                String localName,
                                String qName)
                         throws SAXException

Overrides:

handleEndElement in class SeqSimilarityStAXHandler

Throws:

SAXException