Manual Modules Loaded Module scripting commands General scripting commands Scripting

Commands available for scripting

Scripting language

There are some universal commands that can be used in the scripting language.

Various objects can be scripted in Mesquite. These include modules (whose scripting commands can be found via the list below), and other objects.

Commands of modules

• Mesquite trunk module
• Mesquite
• Reshuffle Character
• Stored Characters
• Calculated value for taxon
• Simulated Characters on Trees
• Simulated Characters
• ACGT Compositional Bias
• Characters from Ordinations
• Characters from Matrix Source
• Current Genetic Codes
• Stored Genetic Code
• Current Probability Model Set (for Simulation)
• Single Stored Probability Model for Simulation
• Current probability models
• Stored Probability Model
• Current Parsimony Models
• Stored Parsimony Model
• Default Trees
• Use Trees from Separate NEXUS File
• Sample Trees from Separate NEXUS File
• Simulated Trees
• Stored Trees
• Consensus Tree
• MrBayes Max. A-Post. Tree
• MrBayes Trees from .t File
• All Trees
• Concatenate Two Tree Sources
• Concatenate Multiple Tree Sources
• Condensed Tree Source
• Consensus Trees from Tree Blocks
• Current Tree
• Modify Current Tree
• Filter Trees from Other Source
• Transform Trees from Other Source
• Randomly Modify Current Tree
• Randomly Modify Trees
• Basic File Coordinator
• File Comment
• Data Window Coordinator
• Manage Character Models
• Save matrix copies
• Initialize DNA Submodels
• Initialize predefined categorical parsimony models
• Initialize predefined continuous parsimony models
• Initialize Parsimony
• Tree Window Coordinator
• Export Matrices & Batch Files
• Process File
• Initialize predefined meristic parsimony models
• Initialize Genetic Code
• Manage Attached Notes
• Manage hyperlinks
• Manage pictures
• Batch File Template Manager
• Manage MESQUITECHARMODELS blocks
• Manage CODONS blocks
• Manage ASSUMPTIONS blocks
• Manage SETS blocks
• Manage NOTES blocks
• Manage LABELS blocks
• Manage AUTHORS blocks
• Manage Alternative Taxon Names
• Manage taxa partititions
• Manage taxon sets
• Manage character inclusion sets
• Manage character partititions
• Manage character weight sets
• Manage character sets
• Manage codon positions
• Manage stored character orders
• Manage parsimony model sets
• Manage probability model sets
• Manage genetic code sets
• Character/State Information
• Descriptions
• Fused Matrix Export (NEXUS)
• Export NEXUS Tree File
• Export for PartitionFinder
• Export for PartitionFinderProtein
• Export NEXUS Tree File from Tree Source
• Clustal (DNA/RNA)
• Clustal (protein)
• FASTA (DNA/RNA)
• FASTA (protein)
• GenBank (DNA/RNA)
• GenBank/GenPept (Protein)
• Import Bayesian Consensus Tree File
• NBRF/PIR (DNA/RNA)
• NBRF/PIR (protein)
• POY (DNA/RNA)
• Simple (categorical data)
• Simple (continuous data)
• Simple (DNA/RNA)
• Simple (Geographic data)
• Simple (protein)
• Tab-delimited categorical data file
• Tab-delimited continuous data file
• Conservative NEXUS
• Export Partitions as Separate NEXUS files
• Simplified NEXUS
• NEXUS file
• Pagel format (ppy) file for Discrete
• Pagel format (ppy) file for Multistate
• Export Taxa Distance Matrix
• Export NEXUS for MrBayes
• Export for OpenTree
• Fused Matrix Export (Phylip/RAxML)
• NONA, Hennig86, PiWe, WinClada
• Phylip (categorical data)
• Phylip (DNA/RNA)
• Phylip (protein)
• Simple Newick/Phylip Treefile
• TNT
• Manage TaxaAssociation blocks
• Manage TREES blocks
• Manage TAXA blocks
• Manage MESQUITE block
• Character Matrix manager
• List of Character Group Labels
• List of Character Inclusion Sets
• List of Character Partitions
• List of Character Sets
• Character List
• List of Codon Positions Sets
• Character Models List
• List of Taxa Partitions
• List of Taxon Group Labels
• Taxon List
• List of Taxon Sets
• List of Character Weight Sets
• List of Parsimony Model Sets
• List of Probability Model Sets
• List of Genetic Code Sets
• Character Matrices List
• NEXUS Blocks List
• Taxa blocks list
• Tree Blocks List
• Trees List
• Web page link
• Go-to Window
• Merge Matrices from File
• Multi Tree Window
• Trees & Diversification Characters
• Merge Taxa & Matrices from File
• Characters Scattergram
• Taxa Scattergram
• Taxon Pairs Scattergram
• Trees Scattergram
• Bar & Line Chart for Characters
• Bar & Line Chart for Character Matrices
• Taxon Pairs Histogram
• Bar & Line Chart for Taxa
• Tree Block Values
• Bar & Line Chart for Trees
• Examples Navigator
• Text Window
• Picture Window
• Summarize State Changes Over Trees
• Selected Taxa Form Clade
• Selected Taxa Convex in Tree
• Tree Congruent with Specified Tree Topology
• Tree Value Satisfies Criterion
• Difference in steps in two characters
• Steps in Character
• Treelength
• Likelihood in Character
• Boolean Tree Value
• Difference in two values for tree
• Attached Value
• Value for Clade of Selected Taxa
• Value for Node Selected In Current Tree
• Tree value using 2 characters
• Number of Taxa
• Ratio of Longest Branches
• Tree value using character matrix
• Average Tree Depth
• Deep Coalescences Multiple Loci
• Deep Coalescences (gene tree)
• Deep Coalescences (species tree)
• Gene Duplication-Extinction (gene tree)
• Gene Duplication-Extinction (species tree)
• s of Slatkin & Maddison
• Tree Depth
• MrBayes Score
• Colless's Imbalance
• Compare with Another Current Tree
• Compare with Other Trees
• Number of SPR Rearrangements
• Number of Congruent Trees
• Sum of Branch Lengths
• Speciation/Extinction Likelihood
• Tree value using character
• Number of States
• Frequency of State
• Difference in two values for character
• Number of Taxa with Non-Gap, Non-Missing
• Character value using other character
• Proportion Gaps In Character
• Proportion Missing
• Value of item in taxon
• Mean value of character
• Character value with current tree
• Character value with tree
• Character Value with Respective Tree
• Character Compositional Bias
• Mean value of character (linked matrix)
• Proportion Polymorphic
• Proportion Internal Gaps
• Proportion Terminal Gaps
• Protein Site Property
• Character Loadings
• Consistency Index for Character
• Retention Index for Character
• Asymmetry Likelihood Ratio Test
• Forward/Backward Rates
• Mk1 Estimated Rate
• BiSSE Speciation/Extinction Likelihood
• BiSSE Ln Likelihood Difference
• BiSSE Net Diversification Likelihood
• Sister Diversification
• Character Likelihood
• Parsimony Character Steps
• Fraction Applicable and Not Missing
• Number of Characters Included
• Number of Selected Taxa with Data in Matrix
• Number of Taxa with Data in Matrix
• Matrix value with current tree
• Pairwise Taxon Difference
• Average Sequence Length in Matrix
• Number of Internal Gaps in Matrix
• Number of Stop Codons in Matrix
• Consistency Index for Matrix
• Retention Index for Matrix
• Treelength
• Number for Nodes from Attached Values
• Number for Nodes using Character
• Clade Match with Another Current Tree
• Node Depth
• Clade Frequencies in Trees
• Number for Nodes using Matrix
• Map Continuous
• Tree Window
• Color Branches by Partition
• Node or Branch-Associated Values
• Node or Branch-Associated Text
• Label Branch Lengths
• Add Note On Tree
• Show Node Numbers
• Branch Information
• Branch Lengths Adjust
• Color Branches
• Node Age Constraints
• Node Namer
• Search within clade
• Select Branches
• Select Taxa
• Insert Node
• Adjust scaling factor of lineage widths
• Annotate Branches
• Node Position Adjust
• Projector
• Taxon Link
• Get Taxon's tree from tolweb.org
• Get Taxon's tree from a web site
• Make Rerootings of Clade
• Randomly Rotate Branches
• Trace All Characters
• Trace Character Over Trees
• Trace Character History
• Values for Current Tree
• Values for Nodes
• Pairwise Comparison
• Landmark Drawings
• Correlation Analysis
• Character-Associated Diversification
• Diversification (Char. Indep.)
• Lineages Through Time
• Tree Utility Coordinator
• Dependent Tree Window
• Mirror Tree Window
• Nodes Scattergram
• Summarize Changes In Selected Clade Over Trees
• Likelihood Surface AsymmMk Model
• Basic Tree Draw Coordinator
• Curvogram
• Balls & Sticks
• Diagonal tree
• Square Line Tree
• Classic Square tree
• Circular tree
• Constellation
• Plot Tree
• Contained Gene (or Other) Trees
• Plot Tree 3D
• Node Locations (3D plot)
• Node Locations (unrooted)
• Node Locations (oval)
• Node Locations (circle)
• Node Locations (standard)
• Node Locations (2D plot)
• Basic Draw Names for Tree Display
• Character Matrix Editor
• Show Distance Matrix
• Extend Selection to Whole Characters
• Select by Matrix Comparison
• Select Matching Taxa
• Select Same Subsequence
• Select Same Distribution
• Select Lowercase Ends
• Edit State Names
• Add/Delete Data
• Alter Data
• Data Painter
• Matrix Info
• Character matrix selection coordinator
• Popup Menu State Entry
• Quick Key Entry
• Search Data
• Select By Search (Find all)
• Character Sort (data)
• Sort Taxa (data)
• Taxon Group Color
• Cell Wand (data)
• Select Block (data)
• Character Wand (data)
• Taxon Wand (data)
• Align To Dropped
• Shift Dragged Sequence To Dropped Sequence
• Scroll To Data
• Show List with Genetic Codes
• Find Sequence
• Side Pusher
• Move block
• Selected Block Mover
• Splits multi-sequence block
• Align Sequences
• Annotation Panel module
• Character Group Color
• Character Reference Strip
• Color By Character Value
• Color If Excluded
• Color By Footnote
• Color By Match to First Taxon
• Color By State
• Color By Taxon Value
• Assigned Colors
• Information Attached To Matrix
• No Color
• Selection Summary Strip
• Color For Aligning
• Highlight Gaps in Coding Regions
• Highlight Apparently Slightly Misaligned
• Color By Amino Acid
• Color By Cell Value
• Color AAs to Check
• State Names Strip
• Bar & Line Chart
• Scattergram
• Ancestral States All
• Export Ancestral States Trace
• Label states
• Shade states
• Reconstruct Ancestral States
• Simulate Ancestral States
• State Change Summarizer (over trees)
• Unambiguous Changes
• Ancestral States Reconstruction Package Introduction
• Add text to taxon names
• Assign taxon names
• Condense taxon names
• Prefix with Taxon Group Name
• Remove from Taxon Names
• Remove Tokens
• Replaces text in taxon names
• Append numbers
• Truncate taxon names
• Tokenize Names
• Detokenize Names
• Move Prefix/Suffix of Taxon Name
• Keep Only Prefix/Suffix of Taxon Name
• Remove Prefix/Suffix of Taxon Name
• Rename Taxa Based On Table in File
• Simplify Taxon Names
• Alphabetic taxon names
• Set Author
• Unique IDs default
• NEXUS Defaults
• Set Tree Defaults
• Parameters Explorer
• Default String Matcher
• Current taxa partition
• Taxa partition from Taxa associations
• Delete Footnotes from Taxa
• Duplicate Taxa
• Merge Selected Taxa
• Randomize Taxon Order
• Select Taxa from List In File
• Select Taxa from Name Search
• Raw Nexus block editor
• Show text
• Stored Taxon Pairs
• Taxon selection coordinator
• Coordinator of voucher information
• Voucher Info from Flexible Table
• Basic Utilities Package Introduction
• Remove Invariant Characters
• Fill
• Impose Indel Pattern of Other Matrix
• Shuffle states among taxa
• Reverse Sequence
• Random Fill (Meristic Uniform)
• Shift to Minimize Stop Codons
• Convert to RY
• Nucleotide Complement
• Set to Lower Case
• Set to Upper Case
• Remove Terminal Incomplete Codons
• Remove Gaps-Only Characters
• Collapse Sequences to Left (Remove all Gaps)
• Collapse Sequences to Right (Remove all Gaps)
• Remove Terminal Gaps-Only Characters
• Align DNA to Protein
• Reverse Complement
• Add Character
• Add Noise (Gaussian)
• Add value
• Arcsine transform
• Inverse of Value
• Log transform
• Multiply by character
• Multiply by value
• Random Fill (Gaussian/Normal)
• Random Fill (Uniform)
• Square Root transform
• Standardize
• Convert Uncertainties to Polymorphisms
• Convert Uncert./Polymorph. to Missing
• Convert Polymorphisms to Uncertainties
• Arbitrarily Resolve State Ambiguities
• Add Characters from Source
• Random Fill (Categorical)
• Sprinkle Missing in Cells
• Recode Characters
• Shift Other To Match Selected
• Clean Up Matrix
• Gaps<->Missing
• Align Sequences in Matrix
• Variable (Mult. States)
• Character Included
• Parsimony Informative
• Consensus Sequence Strip
• Boolean Info Strip
• Number of Data Cells Strip
• Consensus State for Character
• Manage categorical character matrices
• Manage Continuous char. matrices
• Manage Geographic character matrices
• Manage Meristic char. matrices
• Manage DNA/RNA matrices
• Manage Protein matrices
• Proportion Unique States in Taxon
• Number of Matrices with Data for Taxon
• Alignment Score To Ref.
• Align Score/RC Align Score To Ref.
• Multistate sites in taxon
• Number of Stops
• Proportion Gaps in Taxon
• Proportion lower case codings in taxon
• Proportion missing data in taxon
• Proportion of ambiguous sites in taxon
• Number of Unambiguous Sites in Sequence
• Sequence Length
• Average Taxon Value among Trees
• Value from Tree
• Taxon Instability Among Trees
• Continuous state of taxon
• Small State Names Editor
• Continuous Items Editor
• Meristic Items Editor
• Sequence Information Editor
• Categorical Data Package Introduction
• Alter All Matrices
• Compile Processed Matrices into One File
• Process using Data Utility
• Calculate Number for Matrices
• Export Matrices
• Alter Taxon Names
• Compile Trees in Nexus Block in file
• Compile Trees into Simple File
• Make Trees and Add to File
• Alter Matrix As Utility
• Concatenate Selected Matrices
• Duplicate Selected Matrices
• Matrix from Clipboard
• Alter Matrix
• Concatenate Respective Matrices from Two Sources
• Condense to Matrix of Patterns
• Randomly Modify Respective Matrices
• Randomly Modify Matrix
• Stored Matrices
• Compact to (X,Y) matrix
• Simulated Matrices on Trees
• Simulated Matrices on Current Tree
• Translate DNA to Protein
• Matrices from Ordinations
• MRP Matrices from Trees
• Bootstrap Resample Matrix
• Rarefy Characters
• Reshuffle States Within Characters
• Reshuffle Within Characters (Taxa Partitioned)
• Reshuffle Within Taxa (Char. Partitioned)
• Reshuffle States Within Taxa
• Sprinkle Missing
• Matrix Source (indep.)
• Matrix Source (obed.)
• Character selection coordinator
• Character Source
• Character Source
• Compare Other Matrix
• Concatenate Other Matrix
• Log Matrix Details
• Fetch & Add GenBank Sequences
• Compare Bases with Taxon
• Add item...
• Discretize Selected Characters...
• Remove item...
• Rename item...
• Read DATA blocks
• Character Ranges...
• With probability p
• With State Distinguishing Selected Taxa
• Random n characters
• Variable among taxa
• Interpolate Character Selection
• GBLOCKS Selector
• Stored Character Order
• Boolean for Character (in List of Characters window)
• Current Codon Positions
• Character Inclusion
• Group Membership (characters)
• Unique ID (characters)
• Current Weights
• Number for Character (in List of Characters window)
• Character Set Membership
• States Information (in List of Characters window)
• Default Order (characters)
• Current Parsimony Models
• Current Probability Models
• Current Genetic Codes
• Character Matrices Package Introduction
• Item values chart
• Items bi-plot
• Display Mean
• Show Percentile
• Show Y = X
• Charting Package Introduction
• Continuous Data Package Introduction
• Codon Position Rates Model
• Gamma Rates Model
• Gamma Invar Rates Model
• Proportion Invariable Model
• GTR Rate Matrix Model
• Ti/Tv Rate Matrix Model
• DNA Empirical State Frequencies Model
• User-Specified Nucleotide Frequency Model
• Evolve DNA Characters
• Evolve Categorical Characters
• Evolve Continuous Characters
• Stepmatrix
• Brownian Model
• Composite DNA Simulation Model
• Asymmetrical 2-param. Markov-k Model
• Mk1 Model (Markov 1 parameter)
• Genesis Introduction
• Import and Export Package Introduction
• Boolean for Taxon (in List of Taxa window)
• Default Order (taxa)
• Mark Taxa
• Number for Taxon (in List of Taxa window)
• Unique ID (taxa)
• Alternative Names
• Group Membership (taxa)
• OTU ID Code
• OTU ID Code Database
• Associated Taxa
• Original File (import source)
• GenBank Number
• Publication Code
• Has Data in Matrix
• Boolean for Tree (in List of Trees window)
• Number for Tree (in List of Trees window)
• Attachment
• Polytomy Assumption
• Polytomies Present
• Rooting status
• Character Group Color in List
• Number of characters in inclusion set
• Annotation Panel module (list of characters)
• Number of characters in character set
• Color Taxa
• Annotation Panel module (list of taaa)
• Show Columns for All Matrices
• Type of character data matrix
• Number of characters of data matrix
• Taxa of data matrix
• Editability of Matrix
• Visibility of Matrix
• Number for Matrix (in List of Character Matrices window)
• Data type for model
• Model Paradigm
• Type of Model
• Whole or Submodel
• Number for Tree Block (in List of Tree Blocks window)
• Number of trees in tree block
• Taxa of tree block
• Number of groups in taxa partition
• Number of taxa in taxa set
• Number of taxa in set
• Taxon Group Colors
• Number of Taxa Assigned to Group
• Taxon Group Symbol
• Taxon Group Symbol Size
• Taxon Group Visibility in Taxa Maps
• List Windows Package Introduction
• Defaults
• Installer
• Utilities
• Simplicity Manager
• DrawHierarchy
• Manage Foreign Blocks
• Open Special NEXUS
• Open URL
• Process Data Files
• Tree from ToL Web Project...
• Show Employee Tree
• Stored Taxa
• Window Holder
• Parsimony Ancestral States
• Likelihood Ancestral States
• Stochastic Character Mapping (Categorical)
• Parsimony Stepmatrix
• Parsimony Linear
• Parsimony Ordered
• Parsimony Squared-change
• Parsimony Unordered
• Parsimony Meristic Linear
• Parsimony Package Introduction
• Stochastic Character Evolution Package Introduction
• Maximum likelihood reconstruct (Generic categorical)
• Add Taxa To Tree
• Search for Better Tree
• Collapse Zero-length Branches
• Resolve Polytomies (to 0-length branches)
• Set Polytomy Assumption to Default
• Set Polytomy Assumption to Hard
• Set Polytomy Assumption to Soft
• Set to Arbitrary Symmetrical
• Right-Ladderize Tree
• Root tree
• Unroot tree
• Add Selected Taxa To Tree
• Cut Selected Taxa from Tree
• Delete Reticulations
• Graft Other Tree
• Root tree with selected taxa as outgroup
• Reinterpret Internal Node Labels...
• Remove Internal Node Labels
• Scale Selected Branch Lengths
• Assign Selected Branch Lengths
• Obtain Branch Lengths from Values Attached to Nodes
• All Branch Lengths to 1.0
• All Unassigned Branch Lengths to 1.0
• Enforce Minimum Node Age Constraints
• Deassign Branch Lengths
• Convert Negative Branch Lengths to Zero
• Obtain Branch Lengths from Numbers For Nodes
• Scale All Branch Lengths
• Assign All Branch Lengths
• Assign Branch Lengths From Node Names
• Assign Branch Lengths Less than or Equal to Zero...
• Arbitrarily Ultrametricize
• Branch Lengths from current, reinterpreted as Divergence Times
• Alter Branch Lengths
• Alter Trees
• Extract tree block
• Average Tree Value
• Number of Trees Matching Criterion
• Branch Length from Root
• Terminal Branch Length
• Clear All Node Names
• Color by Assigned Color
• Color by Taxon Group
• No Color for Taxon
• Emphasize Taxa With Data in More Matrices
• Color Taxa By Number
• Definite Tree Source
• Uniform speciation (Yule)
• Equiprobable Trees
• Coalescence in Current Tree with Migration
• Coalescent Trees
• Coalescence Contained within Current Tree
• Birth/Death Process Trees
• Uniform Speciation with Sampling
• Tree Blocks from Files Listed In File
• Other Tree Blocks
• Simulated Tree Blocks
• Stored Tree Blocks
• Tree Block Directly From File
• Value for 2 characters with current tree
• Numbers for Nodes from Character Reconstructions
• Simple Tree Window
• Dependent Contained Tree Window
• Shade numbers
• Show Tree
• Values (Tree information panel)...
• Tree of context
• Trees Package Introduction
• ClustalW Align
• MAFFT Align
• MUSCLE Align
• Align Package
• Read DISTRIBUTION blocks
• Stored Taxa Associations
• Taxa Association Package Introduction
• Chart from Instruction File
• Batch Architect Package Introduction
• Coalescence Simulated within Current Tree
• Neutral Coalescence
• Reconstruct Deep Coalescence
• Coalescence Package Introduction
• Majority-Rule Consensus
• Semistrict Consensus
• Strict Consensus
• Consensus Trees Package Introduction
• Pagel's 1994 test of correlated (discrete) character evolution
• Correl Package
• Absolute Distance (General)
• F81 distance
• F84 distance
• Jukes Cantor distance
• K2P distance
• Uncorrected (p) distance (DNA)
• Uncorrected Distance (General)
• Average of Several Distances
• Distance of Contained Taxa
• Node Count (Speciation Patristic) Distances implied by Tree
• Patristic Distances implied by Tree
• Shared History Distances (Covariance matrix) from Tree
• Shared Proportion Distances implied by Tree
• Distances from Character Matrix
• Cluster Analysis
• Distance Analysis
• Invariants-based Tree Inference
• Likelihood Tree Inference
• Tree Searchers (old arrangement)
• Other Tree Inference
• Parsimony Tree Inference
• Single Linkage
• UPGMA
• Distance between taxa
• Distance Matrix Package Introduction
• BiSSE Speciation/Extinction Likelihood Calculator
• BiSSE Trees & Characters
• Evolving Speciation Rate (Continuous Character)
• BiSSE Net Diversification Likelihood (Calculator)
• Speciation/extinction Likelihood Calculator
• Diverse Package
• DManager Package Introduction
• MrBayes Package Introduction
• Meristic Data Package Introduction
• Kyte & Doolittle Hydrophobicity
• Amino Acid Molecular Weight
• Amino Acid Properties
• GC
• Lower Case
• BLAST in Web Browser
• Top BLAST Matches
• Maintain Clipboard Match
• Maintain Target Match
• Find Missing
• Find Incomplete Codons
• Matching Sequence
• BLAST Local Server
• BLAST NCBI GenBank Server
• Molecular Utilities Package Introduction
• Ornamental Trees Package Introduction
• Most Pairs
• Pairs Contrasting in State of One Character
• Pairs Contrasting in State of Two Characters
• Pairwise Comparisons Package Introduction
• Canonical Variates Analysis
• Evolutionary Principal Components
• Principal Components Analysis
• Among-group PCA
• Within-group PCA
• Display Character Loadings
• Rhetenor Package Introduction
• Mesquite Heuristic (Add & rearrange)
• NNI Rearranger
• SPR Rearranger
• Tree Search Package Introduction
• Catalogue of Life
• GenBank Taxon
• Google
• Tree of Life Web Project
• iSpecies
• uBio
• Tree of Life Web Project Interface Package Introduction
• All Rerootings
• Rearranged tree
• Augment Tree Randomly
• Add Noise to Branch Lengths
• Occasionally Randomly Modify
• Random Branch Moves
• Randomly Resolve Polytomies
• Rarefy Tree
• Reshuffle Terminal Taxa
• Randomly Rotate Nodes
• Average Difference of Values Associated with Nodes
• Patristic distance correlation
• Fraction of Clades that are Shared
• Shared Clades
• Shared Partitions
• Concatenate tree blocks
• Duplicate tree blocks
• E-mail Tree
• Select Taxa in Same Clade
• Reorder Taxa By Tree
• Copy Newick Tree for Open Tree
• Tree Farm Package Introduction
• iText
• JAMA Introduction
• mesquite.jsci Package Introduction
• PAL Introduction