ManualModules LoadedModule scripting commandsGeneral scripting commandsScripting

Module: Alignment Score To Ref.

Full package name: mesquite.align.AlignScoreForTaxon.AlignScoreForTaxon
Duty: Number for Taxon (mesquite.lib.duties.NumberForTaxon)

Module Explanation

Reports the Alignment Score for a taxon in a data matrix. The score for each taxon is the cost of aligning that taxon's sequence against the reference taxon using Mesquite's default pairwise aligner. Lower scores mean a better alignment.

Commands of Alignment Score To Ref.