Module: BiSSE Speciation/Extinction Likelihood

Full package name: mesquite.diverse.BiSSELikelihood.BiSSELikelihood
Duty: Number for Character and Tree (Diversification) (mesquite.diverse.lib.NumForCharAndTreeDivers)

Module Explanation

Calculates likelihood with a tree of a species diversification model whose speciation and extinction rates depend on the state of a binary character (BiSSE model, Maddison, Midford & Otto, 2007).

Author(s): Peter E. Midford & Wayne P. Maddison
Version 3.70

Commands of BiSSE Speciation/Extinction Likelihood

setParameters
- Explanation: Sets rate parameters
- Parameters: [double double double double double double]
setReportMode
- Explanation: Sets the report mode
suspend
- Explanation: Suspends calculations
resume
- Explanation: Resumes calculations
getIntegTask
- Explanation: Returns integrating module
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result