Module: BiSSE Trees & Characters

Full package name: mesquite.diverse.BiSSETreeCharSim.BiSSETreeCharSim
Duty: Tree/Character Simulate (mesquite.diverse.lib.TreeCharSimulate)

Module Explanation

Generates tree by a speciation/extinction model in which a character controls rates of speciation/extinction. Time to next event drawn from negative exponential distribution.

Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70

Commands of BiSSE Trees & Characters

setCRate0
- Explanation: Sets the rate of change of the categorical character
- Parameters: [number]
setCRate1
- Explanation: Sets the rate of change of the categorical character
- Parameters: [number]
setSRate0
- Explanation: Sets the rate of speciation if 0
- Parameters: [number]
setSRate1
- Explanation: Sets the rate of speciation if 1
- Parameters: [number]
setERate0
- Explanation: Sets the rate of extinction if 0
- Parameters: [number]
setERate1
- Explanation: Sets the rate of extinction if 1
- Parameters: [number]
setCeilingSize
- Explanation: Sets tree size limit (to stop search)
- Parameters: [number]
setPrior
- Explanation: Sets the prior probability of state 1 at root
- Parameters: [number]
toggleKeepAllExtinct
- Explanation: Sets whether or not extinct lineages are preserved
- Parameters: [on or off]
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result