Full package name: mesquite.molec.CleanUpMatrix.CleanUpMatrix Duty: Data Alterer (mesquite.categ.lib.CategDataAlterer)
Module Explanation
This will adjust sequences according to the option chosen (e.g., by reverse complementing, aligning the matrix, and then adjusting the codon postions).
Author(s): Wayne P. Maddison and David R. Maddison